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Sample records for jump diffusion model

  1. Pricing turbo warrants under mixed-exponential jump diffusion model

    NASA Astrophysics Data System (ADS)

    Yu, Jianfeng; Xu, Weidong

    2016-06-01

    Turbo warrant is a special type of barrier options in which the rebate is calculated as another exotic option. In this paper, using Laplace transforms we obtain the valuation of turbo warrant under the mixed-exponential jump diffusion model, which is able to approximate any jump size distribution. The numerical Laplace inversion examples verify that the analytical solutions are accurate. The results of simulation confirm the argument that jump risk should not be ignored in the valuation of turbo warrants.

  2. Generalized pricing formulas for stochastic volatility jump diffusion models applied to the exponential Vasicek model

    NASA Astrophysics Data System (ADS)

    Liang, L. Z. J.; Lemmens, D.; Tempere, J.

    2010-06-01

    Path integral techniques for the pricing of financial options are mostly based on models that can be recast in terms of a Fokker-Planck differential equation and that, consequently, neglect jumps and only describe drift and diffusion. We present a method to adapt formulas for both the path-integral propagators and the option prices themselves, so that jump processes are taken into account in conjunction with the usual drift and diffusion terms. In particular, we focus on stochastic volatility models, such as the exponential Vasicek model, and extend the pricing formulas and propagator of this model to incorporate jump diffusion with a given jump size distribution. This model is of importance to include non-Gaussian fluctuations beyond the Black-Scholes model, and moreover yields a lognormal distribution of the volatilities, in agreement with results from superstatistical analysis. The results obtained in the present formalism are checked with Monte Carlo simulations.

  3. Convergence of the binomial tree method for Asian options in jump-diffusion models

    NASA Astrophysics Data System (ADS)

    Kim, Kwang Ik; Qian, Xiao-Song

    2007-06-01

    The binomial tree methods (BTM), first proposed by Cox, Ross and Rubinstein [J. Cox, S. Ross, M. Rubinstein, Option pricing: A simplified approach, J. Finan. Econ. 7 (1979) 229-264] in diffusion models and extended by Amin [K.I. Amin, Jump diffusion option valuation in discrete time, J. Finance 48 (1993) 1833-1863] to jump-diffusion models, is one of the most popular approaches to pricing options. In this paper, we present a binomial tree method for Asian options in jump-diffusion models and show its equivalence to certain explicit difference scheme. Employing numerical analysis and the notion of viscosity solution, we prove the uniform convergence of the binomial tree method for European-style and American-style Asian options.

  4. Parameters estimation using the first passage times method in a jump-diffusion model

    NASA Astrophysics Data System (ADS)

    Khaldi, K.; Meddahi, S.

    2016-06-01

    The main purposes of this paper are two contributions: (1) it presents a new method, which is the first passage time (FPT method) generalized for all passage times (GPT method), in order to estimate the parameters of stochastic Jump-Diffusion process. (2) it compares in a time series model, share price of gold, the empirical results of the estimation and forecasts obtained with the GPT method and those obtained by the moments method and the FPT method applied to the Merton Jump-Diffusion (MJD) model.

  5. Efficient variance reduction methods for Asian option pricing under exponential jump-diffusion models

    NASA Astrophysics Data System (ADS)

    Lai, Yongzeng; Zeng, Yan; Xi, Xiaojing

    2011-11-01

    In this paper, we discuss control variate methods for Asian option pricing under exponential jump diffusion model for the underlying asset prices. Numerical results show that the new control variate XNCV is much more efficient than the classical control variate XCCV when used in pricing Asian options. For example, the variance reduction ratios by XCCV are no more than 120 whereas those by XNCV vary from 15797 to 49171 on average over sample sizes 1024, 2048, 4096, 8192, 16384 and 32768.

  6. Pricing equity warrants with a promised lowest price in Merton's jump-diffusion model

    NASA Astrophysics Data System (ADS)

    Xiao, Weilin; Zhang, Xili

    2016-09-01

    Motivated by the empirical evidence of jumps in the dynamics of firm behavior, this paper considers the problem of pricing equity warrants in the presence of a promised lowest price when the price of the underlying asset follows the Merton's jump-diffusion process. Using the Martingale approach, we propose a valuation model of equity warrants based on the firm value, its volatility, and parameters of the jump component, which are not directly observable. To implement our pricing model empirically, this paper also provides a promising estimation method for obtaining these desired variables based on observable data, such as stock prices and the book value of total liability. We conduct an empirical study to ascertain the performance of our proposed model using the data of Changdian warrant collected from 25 May 2006 (the listing date) to 29 January 2007 (the expiration date). Furthermore, the comparison of traditional models (such as the Black-Scholes model, the Noreen-Wolfson model, the Lauterbach-Schultz model, and the Ukhov model) with our model is presented. From the empirical study, we can see that the mean absolute error of our pricing model is 16.75%. By contrast, the Black-Scholes model, the Noreen-Wolfson model, the Lauterbach-Schultz model, and the Ukhov model applied to the same warrant produce mean absolute errors of 92.24%, 45.38%, 87.34%, 76.12%, respectively. Thus both the dilution effect and the jump feature cannot be ignored in determining the valuation of equity warrants.

  7. Simple jumping process with memory: Transport equation and diffusion

    NASA Astrophysics Data System (ADS)

    Kamińska, A.; Srokowski, T.

    2004-06-01

    We present a stochastic jumping process, defined in terms of jump-size probability density and jumping rate, which is a generalization of the well-known kangaroo process. The definition takes into account two process values: after and before the jump. Therefore, the process is able to preserve memory about its previous values. It possesses a simple stationary limit. Its master equation is interpreted as the kinetic equation with variable collision rate. The process can be easily applied to model systems which relax to distributions other than Maxwellian. The case of a constant jumping rate corresponds to the diffusion process, either normal or ballistic.

  8. Deriving appropriate boundary conditions, and accelerating position-jump simulations, of diffusion using non-local jumping.

    PubMed

    Taylor, P R; Baker, R E; Yates, C A

    2014-01-01

    In this paper we explore lattice-based position-jump models of diffusion, and the implications of introducing non-local jumping; particles can jump to a range of nearby boxes rather than only to their nearest neighbours. We begin by deriving conditions for equivalence with traditional local jumping models in the continuum limit. We then generalize a previously postulated implementation of the Robin boundary condition for a non-local process of arbitrary maximum jump length, and present a novel implementation of flux boundary conditions, again generalized for a non-local process of arbitrary maximum jump length. In both these cases we validate our results using stochastic simulation. We then proceed to consider two variations on the basic diffusion model: a hybrid local/non-local scheme suitable for models involving sharp concentration gradients, and the implementation of biased jumping. In all cases we show that non-local jumping can deliver substantial time savings for stochastic simulations. PMID:25514045

  9. Deriving appropriate boundary conditions, and accelerating position-jump simulations, of diffusion using non-local jumping

    NASA Astrophysics Data System (ADS)

    Taylor, P. R.; Baker, R. E.; Yates, C. A.

    2015-02-01

    In this paper we explore lattice-based position-jump models of diffusion, and the implications of introducing non-local jumping; particles can jump to a range of nearby boxes rather than only to their nearest neighbours. We begin by deriving conditions for equivalence with traditional local jumping models in the continuum limit. We then generalize a previously postulated implementation of the Robin boundary condition for a non-local process of arbitrary maximum jump length, and present a novel implementation of flux boundary conditions, again generalized for a non-local process of arbitrary maximum jump length. In both these cases we validate our results using stochastic simulation. We then proceed to consider two variations on the basic diffusion model: a hybrid local/non-local scheme suitable for models involving sharp concentration gradients, and the implementation of biased jumping. In all cases we show that non-local jumping can deliver substantial time savings for stochastic simulations.

  10. Implementation of jump-diffusion algorithms for understanding FLIR scenes

    NASA Astrophysics Data System (ADS)

    Lanterman, Aaron D.; Miller, Michael I.; Snyder, Donald L.

    1995-07-01

    Our pattern theoretic approach to the automated understanding of forward-looking infrared (FLIR) images brings the traditionally separate endeavors of detection, tracking, and recognition together into a unified jump-diffusion process. New objects are detected and object types are recognized through discrete jump moves. Between jumps, the location and orientation of objects are estimated via continuous diffusions. An hypothesized scene, simulated from the emissive characteristics of the hypothesized scene elements, is compared with the collected data by a likelihood function based on sensor statistics. This likelihood is combined with a prior distribution defined over the set of possible scenes to form a posterior distribution. The jump-diffusion process empirically generates the posterior distribution. Both the diffusion and jump operations involve the simulation of a scene produced by a hypothesized configuration. Scene simulation is most effectively accomplished by pipelined rendering engines such as silicon graphics. We demonstrate the execution of our algorithm on a silicon graphics onyx/reality engine.

  11. Theory of classical diffusion jumps in solids. II. Isotope effect and first-order anharmonic terms

    NASA Astrophysics Data System (ADS)

    Jacucci, G.; de Lorenzi, G.; Marchese, M.; Flynn, C. P.; Toller, M.

    1987-08-01

    Diffusion in solids, including the isotope effect, is discussed within the short-memory augmented-rate theory recently introduced by Toller, Jacucci, De Lorenzi, and Flynn. Terms in the jump rate for an anharmonic expansion of the barrier potential are presented complete to first order in β-1 and evaluated for vacancy diffusion in models of Ar, Ag, and Cu.

  12. Jump rates for surface diffusion of large molecules from first principles

    SciTech Connect

    Shea, Patrick Kreuzer, Hans Jürgen

    2015-04-21

    We apply a recently developed stochastic model for the surface diffusion of large molecules to calculate jump rates for 9,10-dithioanthracene on a Cu(111) surface. The necessary input parameters for the stochastic model are calculated from first principles using density functional theory (DFT). We find that the inclusion of van der Waals corrections to the DFT energies is critical to obtain good agreement with experimental results for the adsorption geometry and energy barrier for diffusion. The predictions for jump rates in our model are in excellent agreement with measured values and show a marked improvement over transition state theory (TST). We find that the jump rate prefactor is reduced by an order of magnitude from the TST estimate due to frictional damping resulting from energy exchange with surface phonons, as well as a rotational mode of the diffusing molecule.

  13. Anomalous diffusion for a correlated process with long jumps

    NASA Astrophysics Data System (ADS)

    Srokowski, Tomasz

    2011-09-01

    We discuss diffusion properties of a dynamical system, which is characterised by long-tail distributions and finite correlations. The particle velocity has the stable Lévy distribution; it is assumed as a jumping process (the kangaroo process) with a variable jumping rate. Both the exponential and the algebraic form of the covariance-defined for the truncated distribution-are considered. It is demonstrated by numerical calculations that the stationary solution of the master equation for the case of power-law correlations decays with time, but a simple modification of the process makes the tails stable. The main result of the paper is a finding that-in contrast to the velocity fluctuations-the position variance may be finite. It rises with time faster than linearly: the diffusion is anomalously enhanced. On the other hand, a process which follows from a superposition of the Ornstein-Uhlenbeck-Lévy processes always leads to position distributions with a divergent variance which means accelerated diffusion.

  14. Multiscale integration schemes for jump-diffusion systems

    SciTech Connect

    Givon, D.; Kevrekidis, I.G.

    2008-12-09

    We study a two-time-scale system of jump-diffusion stochastic differential equations. We analyze a class of multiscale integration methods for these systems, which, in the spirit of [1], consist of a hybridization between a standard solver for the slow components and short runs for the fast dynamics, which are used to estimate the effect that the fast components have on the slow ones. We obtain explicit bounds for the discrepancy between the results of the multiscale integration method and the slow components of the original system.

  15. Velocity-jump models with crowding effects

    NASA Astrophysics Data System (ADS)

    Treloar, Katrina K.; Simpson, Matthew J.; McCue, Scott W.

    2011-12-01

    Velocity-jump processes are discrete random-walk models that have many applications including the study of biological and ecological collective motion. In particular, velocity-jump models are often used to represent a type of persistent motion, known as a run and tumble, that is exhibited by some isolated bacteria cells. All previous velocity-jump processes are noninteracting, which means that crowding effects and agent-to-agent interactions are neglected. By neglecting these agent-to-agent interactions, traditional velocity-jump models are only applicable to very dilute systems. Our work is motivated by the fact that many applications in cell biology, such as wound healing, cancer invasion, and development, often involve tissues that are densely packed with cells where cell-to-cell contact and crowding effects can be important. To describe these kinds of high-cell-density problems using a velocity-jump process we introduce three different classes of crowding interactions into a one-dimensional model. Simulation data and averaging arguments lead to a suite of continuum descriptions of the interacting velocity-jump processes. We show that the resulting systems of hyperbolic partial differential equations predict the mean behavior of the stochastic simulations very well.

  16. Understanding Vertical Jump Potentiation: A Deterministic Model.

    PubMed

    Suchomel, Timothy J; Lamont, Hugh S; Moir, Gavin L

    2016-06-01

    This review article discusses previous postactivation potentiation (PAP) literature and provides a deterministic model for vertical jump (i.e., squat jump, countermovement jump, and drop/depth jump) potentiation. There are a number of factors that must be considered when designing an effective strength-power potentiation complex (SPPC) focused on vertical jump potentiation. Sport scientists and practitioners must consider the characteristics of the subject being tested and the design of the SPPC itself. Subject characteristics that must be considered when designing an SPPC focused on vertical jump potentiation include the individual's relative strength, sex, muscle characteristics, neuromuscular characteristics, current fatigue state, and training background. Aspects of the SPPC that must be considered for vertical jump potentiation include the potentiating exercise, level and rate of muscle activation, volume load completed, the ballistic or non-ballistic nature of the potentiating exercise, and the rest interval(s) used following the potentiating exercise. Sport scientists and practitioners should design and seek SPPCs that are practical in nature regarding the equipment needed and the rest interval required for a potentiated performance. If practitioners would like to incorporate PAP as a training tool, they must take the athlete training time restrictions into account as a number of previous SPPCs have been shown to require long rest periods before potentiation can be realized. Thus, practitioners should seek SPPCs that may be effectively implemented in training and that do not require excessive rest intervals that may take away from valuable training time. Practitioners may decrease the necessary time needed to realize potentiation by improving their subject's relative strength. PMID:26712510

  17. A jump persistent turning walker to model zebrafish locomotion

    PubMed Central

    Mwaffo, Violet; Anderson, Ross P.; Butail, Sachit; Porfiri, Maurizio

    2015-01-01

    Zebrafish are gaining momentum as a laboratory animal species for the investigation of several functional and dysfunctional biological processes. Mathematical models of zebrafish behaviour are expected to considerably aid in the design of hypothesis-driven studies by enabling preliminary in silico tests that can be used to infer possible experimental outcomes without the use of zebrafish. This study is motivated by observations of sudden, drastic changes in zebrafish locomotion in the form of large deviations in turn rate. We demonstrate that such deviations can be captured through a stochastic mean reverting jump diffusion model, a process that is commonly used in financial engineering to describe large changes in the price of an asset. The jump process-based model is validated on trajectory data of adult subjects swimming in a shallow circular tank obtained from an overhead camera. Through statistical comparison of the empirical distribution of the turn rate against theoretical predictions, we demonstrate the feasibility of describing zebrafish as a jump persistent turning walker. The critical role of the jump term is assessed through comparison with a simplified mean reversion diffusion model, which does not allow for describing the heavy-tailed distributions observed in the fish turn rate. PMID:25392396

  18. Relationship between maximum principle and dynamic programming for stochastic differential games of jump diffusions

    NASA Astrophysics Data System (ADS)

    Shi, Jingtao

    2014-04-01

    This paper is concerned with the relationship between maximum principle and dynamic programming for zero-sum stochastic differential games of jump diffusions. Under the assumption that the value function is smooth enough, relations among the adjoint processes, the generalised Hamiltonian function and the value function are given. A portfolio optimisation problem under model uncertainty in an incomplete financial market is discussed to show the applications of our result.

  19. General Metropolis-Hastings jump diffusions for automatic target recognition in infrared scenes

    NASA Astrophysics Data System (ADS)

    Lanterman, Aaron D.; Miller, Michael I.; Snyder, Donald L.

    1997-04-01

    To locate and recognize ground-based targets in forward- looking IR (FLIR) images, 3D faceted models with associated pose parameters are formulated to accommodate the variability found in FLIR imagery. Taking a Bayesian approach, scenes are simulated from the emissive characteristics of the CAD models and compared with the collected data by a likelihood function based on sensor statistics. This likelihood is combined with a prior distribution defined over the set of possible scenes to form a posterior distribution. To accommodate scenes with variable numbers of targets, the posterior distribution is defined over parameter vectors of varying dimension. An inference algorithm based on Metropolis-Hastings jump- diffusion processes empirically samples from the posterior distribution, generating configurations of templates and transformations that match the collected sensor data with high probability. The jumps accommodate the addition and deletion of targets and the estimation of target identities; diffusions refine the hypotheses by drifting along the gradient of the posterior distribution with respect to the orientation and position parameters. Previous results on jumps strategies analogous to the Metropolis acceptance/rejection algorithm, with proposals drawn from the prior and accepted based on the likelihood, are extended to encompass general Metropolis-Hastings proposal densities. In particular, the algorithm proposes moves by drawing from the posterior distribution over computationally tractible subsets of the parameter space. The algorithm is illustrated by an implementation on a Silicon Graphics Onyx/Reality Engine.

  20. Credit risk—A structural model with jumps and correlations

    NASA Astrophysics Data System (ADS)

    Schäfer, Rudi; Sjölin, Markus; Sundin, Andreas; Wolanski, Michal; Guhr, Thomas

    2007-09-01

    We set up a structural model to study credit risk for a portfolio containing several or many credit contracts. The model is based on a jump-diffusion process for the risk factors, i.e. for the company assets. We also include correlations between the companies. We discuss that models of this type have much in common with other problems in statistical physics and in the theory of complex systems. We study a simplified version of our model analytically. Furthermore, we perform extensive numerical simulations for the full model. The observables are the loss distribution of the credit portfolio, its moments and other quantities derived thereof. We compile detailed information about the parameter dependence of these observables. In the course of setting up and analyzing our model, we also give a review of credit risk modeling for a physics audience.

  1. Anomalous diffusion with under- and overshooting subordination: a competition between the very large jumps in physical and operational times.

    PubMed

    Stanislavsky, Aleksander; Weron, Karina

    2010-11-01

    In this paper we present an approach to anomalous diffusion based on subordination of stochastic processes. Application of such a methodology to analysis of the diffusion processes helps better understanding of physical mechanisms underlying the nonexponential relaxation phenomena. In the subordination framework we analyze a coupling between the very large jumps in physical and two different operational times, modeled by under- and overshooting subordinators, respectively. We show that the resulting diffusion processes display features by means of which all experimentally observed two-power-law dielectric relaxation patterns can be explained. We also derive the corresponding fractional equations governing the spatiotemporal evolution of the diffusion front of an excitation mode undergoing diffusion in the system under consideration. The commonly known type of subdiffusion, corresponding to the Mittag-Leffler (or Cole-Cole) relaxation, appears as a special case of the studied anomalous diffusion processes. PMID:21230450

  2. Control Improvement for Jump-Diffusion Processes with Applications to Finance

    SciTech Connect

    Baeuerle, Nicole; Rieder, Ulrich

    2012-02-15

    We consider stochastic control problems with jump-diffusion processes and formulate an algorithm which produces, starting from a given admissible control {pi}, a new control with a better value. If no improvement is possible, then {pi} is optimal. Such an algorithm is well-known for discrete-time Markov Decision Problems under the name Howard's policy improvement algorithm. The idea can be traced back to Bellman. Here we show with the help of martingale techniques that such an algorithm can also be formulated for stochastic control problems with jump-diffusion processes. As an application we derive some interesting results in financial portfolio optimization.

  3. A unified model for the long and high jump

    NASA Astrophysics Data System (ADS)

    Helene, O.; Yamashita, M. T.

    2005-10-01

    A simple model based on the maximum energy that an athlete can produce in a small time interval is used to describe the high and long jump. Conservation of angular momentum is used to explain why an athlete should run horizontally to perform a vertical jump. Our results agree with world records.

  4. Experimental investigation on single person's jumping load model

    NASA Astrophysics Data System (ADS)

    Chen, Jun; Wang, Haoqi; Wang, Ling

    2015-12-01

    This paper presents a modified half-sine-squared load model of the jumping impulses for a single person. The model is based on a database of 22,921 experimentally measured single jumping load cycles from 100 test subjects. Threedimensional motion capture technology in conjunction with force plates was employed in the experiment to record jumping loads. The variation range and probability distribution of the controlling parameters for the load model such as the impact factor, jumping frequency and contact ratio, are discussed using the experimental data. Correlation relationships between the three parameters are investigated. The contact ratio and jumping frequency are identified as independent model parameters, and an empirical frequency-dependent function is derived for the impact factor. The feasibility of the proposed load model is established by comparing the simulated load curves with measured ones, and by comparing the acceleration responses of a single-degree-of-freedom system to the simulated and measured jumping loads. The results show that a realistic individual jumping load can be generated by the proposed method. This can then be used to assess the dynamic response of assembly structures.

  5. Numerical simulations and modeling for stochastic biological systems with jumps

    NASA Astrophysics Data System (ADS)

    Zou, Xiaoling; Wang, Ke

    2014-05-01

    This paper gives a numerical method to simulate sample paths for stochastic differential equations (SDEs) driven by Poisson random measures. It provides us a new approach to simulate systems with jumps from a different angle. The driving Poisson random measures are assumed to be generated by stationary Poisson point processes instead of Lévy processes. Methods provided in this paper can be used to simulate SDEs with Lévy noise approximately. The simulation is divided into two parts: the part of jumping integration is based on definition without approximation while the continuous part is based on some classical approaches. Biological explanations for stochastic integrations with jumps are motivated by several numerical simulations. How to model biological systems with jumps is showed in this paper. Moreover, method of choosing integrands and stationary Poisson point processes in jumping integrations for biological models are obtained. In addition, results are illustrated through some examples and numerical simulations. For some examples, earthquake is chose as a jumping source which causes jumps on the size of biological population.

  6. Analysis and Model Tests of Autogiro Jump Take-off

    NASA Technical Reports Server (NTRS)

    Wheatley, John B; Bioletti, Carlton

    1936-01-01

    An analysis is made of the autogiro jump take-off, in which the kinetic energy of the rotor turning at excess speed is used to effect a vertical take-off. By the use of suitable approximations, the differential equation of motion of the rotor during this maneuver is reduced to a form that can be solved. Only the vertical jump was studied; the effect of a forward motion during the jump is discussed briefly. The results of model tests of the jump take-off have been incorporated in the paper and used to establish the relative accuracy of the results predicted from the analysis. Good agreement between calculation and experiment was obtained by making justifiable allowances.

  7. Intrinsic diffusion simulation for single-phase multicomponent systems and its application for the analysis of the Darken-Manning and jump frequency formalisms

    NASA Astrophysics Data System (ADS)

    Kulkarni, Nagraj Sheshgiri

    A multicomponent, single-phase, diffusion simulation based on Darken's treatment of intrinsic diffusion has been developed, which provides all the information available from an intrinsic diffusion experiment, including composition profiles and diffusion paths, lattice shifts and velocities, intrinsic and interdiffusion fluxes, as well as fluxes and mean velocities in different frames of reference. The various steps involved in the simulation are discussed and the self-consistency of the simulation is tested with the aid of model systems having constant and variable molar volumes. After an examination of the historical development of the Darken-Manning theories and a brief discussion of previous tests in the literature, a systematic procedure for the comprehensive assessment of these theories is proposed in which the intrinsic diffusion simulation developed in this work occupies a central role. This procedure is then utilized to perform an assessment of the Darken-Manning relations for four binary systems: Ag-Cd, Au-Ni, Cu-Zn and Cu-Ni. It is shown that the Darken-Manning relations that provide the connection between the tracer, intrinsic and interdiffusion coefficients, are unsatisfactory. Hence, it is suggested that the development of multicomponent diffusion databases, which often use the Darken relations for the evaluation of the phenomenological coefficients, may be compromised. As an alternative to the traditional phenomenological formalism of multicomponent diffusion, a kinetic formalism based on atom jump frequencies is proposed. An expression for the intrinsic flux in terms of an unbiased and a biased component is derived. It is demonstrated with the aid of the simulation for the Cu-Zn system, that the biased flux may be evaluated from the experimental intrinsic flux and the unbiased flux (obtained from the tracer jump frequency). An unbiased jump frequency formalism that utilizes effective rather than tracer jump frequencies and avoids the complexities

  8. Two-level parabolic model with phase-jump coupling

    NASA Astrophysics Data System (ADS)

    Lehto, J. M. S.; Suominen, K.-A.

    2016-07-01

    We study the coherent dynamics of a two-level parabolic model and ways to enhance population transfer and even to obtain complete population inversion in such models. Motivated by the complete population inversion effect of zero-area pulses found in [Phys. Rev. A 73, 023416 (2006), 10.1103/PhysRevA.73.023416], we consider a scheme where a given coupling function is transformed to a zero-area coupling by performing a phase jump in the middle of the evolution. With a phase-jump coupling, complete population inversion can be achieved with relatively small coupling. In the case of Zener tunneling, complete population inversion is obtained for strong-enough coupling regardless of the height of the tunneling barrier. We also derive a universal formula for the effect of the phase jump.

  9. Insider Models with Finite Utility in Markets with Jumps

    SciTech Connect

    Kohatsu-Higa, Arturo; Yamazato, Makoto

    2011-10-15

    In this article we consider, under a Levy process model for the stock price, the utility optimization problem for an insider agent whose additional information is the final price of the stock blurred with an additional independent noise which vanishes as the final time approaches. Our main interest is establishing conditions under which the utility of the insider is finite. Mathematically, the problem entails the study of a 'progressive' enlargement of filtration with respect to random measures. We study the jump structure of the process which leads to the conclusion that in most cases the utility of the insider is finite and his optimal portfolio is bounded. This can be explained financially by the high risks involved in models with jumps.

  10. Effect of turbulence models on the submerged hydraulic jump simulation

    NASA Astrophysics Data System (ADS)

    Shekari, Y.; Javan, M.; Eghbalzadeh, A.

    2015-05-01

    This study presents a numerical investigation and prediction of the flow field in threedimensional submerged hydraulic jumps. The volume of fluid (VOF) method is used to simulate the free surface. The turbulent structure is simulated by using different turbulence models, such as the standard k-ɛ model, RNG k-ɛ model, realizable k-ɛ model, and Reynolds-stress model (RSM) closure schemes. The capabilities of the turbulence models are investigated with the standard wall functions and enhanced wall treatment methods. A comparison between the numerical and experimental results shows that the numerical model is adequate for predicting the flow pattern and free surface of submerged hydraulic jumps. The RNG k-ɛ turbulence model with the enhanced wall treatment method ensures the highest accuracy in the water surface simulation. Near the channel bed of a fully developed region, the RSM model with the enhanced wall treatment method shows better agreement with the experimental longitudinal velocity than the other turbulence models. The standard k-ɛ model predicts the longitudinal velocity more accurately than the RNG and realizable k-ɛ models.

  11. UPDATING APPLIED DIFFUSION MODELS

    EPA Science Inventory

    Most diffusion models currently used in air quality applications are substantially out of date with understanding of turbulence and diffusion in the planetary boundary layer. Under a Cooperative Agreement with the Environmental Protection Agency, the American Meteorological Socie...

  12. Pricing American put option on zero-coupon bond in a jump-extended CIR model

    NASA Astrophysics Data System (ADS)

    Deng, Guohe

    2015-05-01

    This paper presents a jump extension to the CIR model of the short interest rate with exponential distribution jumps. We derive an approximated price of an American put option on a defaultable-free, zero-coupon bond using the two-GJ approach based on combining an European put option and a Bermudan option with two possible exercise dates. Closed-form solutions for both the European put option and the Bermudan option are obtained by using multivariate Fourier transforms and characteristic functions. The accuracy and efficiency of the approximation are examined using the least-square Monte Carlo simulation as the benchmarks. Finally several numerical examples illustrating the results have been presented and the prices have been compared to the corresponding prices for American option in the pure diffusion model.

  13. Spatially Varying Coefficient Model for Neuroimaging Data with Jump Discontinuities

    PubMed Central

    Zhu, Hongtu; Fan, Jianqing; Kong, Linglong

    2014-01-01

    Motivated by recent work on studying massive imaging data in various neuroimaging studies, we propose a novel spatially varying coefficient model (SVCM) to capture the varying association between imaging measures in a three-dimensional (3D) volume (or 2D surface) with a set of covariates. Two stylized features of neuorimaging data are the presence of multiple piecewise smooth regions with unknown edges and jumps and substantial spatial correlations. To specifically account for these two features, SVCM includes a measurement model with multiple varying coefficient functions, a jumping surface model for each varying coefficient function, and a functional principal component model. We develop a three-stage estimation procedure to simultaneously estimate the varying coefficient functions and the spatial correlations. The estimation procedure includes a fast multiscale adaptive estimation and testing procedure to independently estimate each varying coefficient function, while preserving its edges among different piecewise-smooth regions. We systematically investigate the asymptotic properties (e.g., consistency and asymptotic normality) of the multiscale adaptive parameter estimates. We also establish the uniform convergence rate of the estimated spatial covariance function and its associated eigenvalues and eigenfunctions. Our Monte Carlo simulation and real data analysis have confirmed the excellent performance of SVCM. PMID:25435598

  14. The naked toy model of a jumping ring

    NASA Astrophysics Data System (ADS)

    Donoso, Guillermo; Ladera, Celso L.

    2014-01-01

    We present a comprehensive analytical model of the well-known jumping ring—in fact an improved version of that system--as well as the experimental results that validate the model. Particular attention is paid to the magnetic driving force, whose explicit dependences upon the phase, amplitude and frequency of the exciting current we manage to separate experimentally and plot, so that it becomes evident how the magnetic force on the ring actually arises and evolves in time. We are able to measure not only the large Foucault currents that arise in the ring, but also the magnetic field generated by the ring itself in spite of the presence of the comparable magnetic field in which the ring moves.

  15. Modeling complex diffusion mechanisms in L1 2 -structured compounds

    NASA Astrophysics Data System (ADS)

    Zacate, M. O.; Lape, M.; Stufflebeam, M.; Evenson, W. E.

    2010-04-01

    We report on a procedure developed to create stochastic models of hyperfine interactions for complex diffusion mechanisms and demonstrate its application to simulate perturbed angular correlation spectra for the divacancy and 6-jump cycle diffusion mechanisms in L12-structured compounds.

  16. Elementary diffusion jump of iron atoms in intermetallic phases studied by Moessbauer spectroscopy; 1: Fe-Al close to equiatomic stoichiometry

    SciTech Connect

    Vogl, G.; Sepiol, B. . Inst. fuer Festkoerperphysik)

    1994-09-01

    The authors have studied the quasielastic broadening of the [sup 57]Fe Moessbauer resonance in the intermetallic compound FeAl in order to determine the diffusion jump mechanism of the Fe atoms. From the angular dependence of the line broadening relative to an oriented single crystal they deduce that the Fe atoms jump effectively to different neighbor sites on the Fe sublattice. The jump is, however, not a direct one, but rather a combination of a jump into a nearest neighbor vacancy--leading to short-time occupation of an antistructure site on the Al sublattice--and a jump into a vacancy back on the Fe sublattice.

  17. Radon diffusion modelling.

    PubMed

    Wilkinson, P; Dimbylow, P J

    1985-10-01

    A mathematical model has been developed that examines the ingress of radon into houses, through a vertical crack in an otherwise impervious concrete floor. Initially, the model considered the diffusive flow of radon from its soil source and this simulation has highlighted the dependency of the flux of radon into the house on the magnitude of various parameters, such as the diffusion coefficient of radon in soil. A preliminary investigation of the modelling of pressure-driven flow into a building is presented, and the potential of this type of analysis is discussed. PMID:4081719

  18. Modelling of monovacancy diffusion in W over wide temperature range

    SciTech Connect

    Bukonte, L. Ahlgren, T.; Heinola, K.

    2014-03-28

    The diffusion of monovacancies in tungsten is studied computationally over a wide temperature range from 1300 K until the melting point of the material. Our modelling is based on Molecular Dynamics technique and Density Functional Theory. The monovacancy migration barriers are calculated using nudged elastic band method for nearest and next-nearest neighbour monovacancy jumps. The diffusion pre-exponential factor for monovacancy diffusion is found to be two to three orders of magnitude higher than commonly used in computational studies, resulting in attempt frequency of the order 10{sup 15} Hz. Multiple nearest neighbour jumps of monovacancy are found to play an important role in the contribution to the total diffusion coefficient, especially at temperatures above 2/3 of T{sub m}, resulting in an upward curvature of the Arrhenius diagram. The probabilities for different nearest neighbour jumps for monovacancy in W are calculated at different temperatures.

  19. Diffuse sorption modeling.

    PubMed

    Pivovarov, Sergey

    2009-04-01

    This work presents a simple solution for the diffuse double layer model, applicable to calculation of surface speciation as well as to simulation of ionic adsorption within the diffuse layer of solution in arbitrary salt media. Based on Poisson-Boltzmann equation, the Gaines-Thomas selectivity coefficient for uni-bivalent exchange on clay, K(GT)(Me(2+)/M(+))=(Q(Me)(0.5)/Q(M)){M(+)}/{Me(2+)}(0.5), (Q is the equivalent fraction of cation in the exchange capacity, and {M(+)} and {Me(2+)} are the ionic activities in solution) may be calculated as [surface charge, mueq/m(2)]/0.61. The obtained solution of the Poisson-Boltzmann equation was applied to calculation of ionic exchange on clays and to simulation of the surface charge of ferrihydrite in 0.01-6 M NaCl solutions. In addition, a new model of acid-base properties was developed. This model is based on assumption that the net proton charge is not located on the mathematical surface plane but diffusely distributed within the subsurface layer of the lattice. It is shown that the obtained solution of the Poisson-Boltzmann equation makes such calculations possible, and that this approach is more efficient than the original diffuse double layer model. PMID:19159896

  20. Computational model of maximal-height single-joint jumping predicts bouncing as an optimal strategy.

    PubMed

    van Werkhoven, Herman; Piazza, Stephen J

    2013-04-01

    Maximal-height single-joint jumping, in which only the ankle muscles are used for propulsion, is a useful paradigm for joint-specific investigation of the mechanisms underlying optimal performance. In this study, we used a combination of computational modeling and experiments to determine the optimal strategy for this task. We hypothesized that our computer simulation and subjects would use a countermovement in order to maximize jump height. Our model was actuated by only a lumped plantarflexor and a lumped dorsiflexor, and we simulated maximal-height jumping using parameter optimization to determine the control excitations driving these muscles. Experimental data were collected from eight subjects who wore braces to limit knee motion during jumps. The model did not jump as high as the subjects did, but its jump height (12.8 cm) was similar to that found for subjects, 16.3±4.6 cm. The model jumped highest when it "bounced" by executing several countermovements in succession. Four of the subjects jumped highest when they also bounced; these subjects were also the highest jumpers and they bounced at 2.53±0.47 Hz, a value similar to that employed by the computational model, 2.78 Hz. The other four subjects, who failed to jump highest when bouncing, bounced at only 1.46±0.45 Hz when they attempted to do so. Simulation results indicated that subjects who used a bouncing strategy to record their highest jump made use of mechanical resonance to facilitate elastic energy storage in the Achilles tendon. Simulation results also showed that multiple bounces allowed the model to reach an optimal state in which potential energy was maximized prior to the final pushoff. PMID:23466176

  1. Jumping hoops

    NASA Astrophysics Data System (ADS)

    Yang, Eunjin; Kim, Ho-Young

    2012-01-01

    We investigate the dynamics of an elastic hoop as a model of the jumps of small insects. During a jump the initial elastic strain energy is converted to translational, gravitational, and vibrational energy, and is dissipated by interaction with the floor and the ambient air. We show that the strain energy is initially divided into translational, vibrational, and dissipation energies with a ratio that is constant regardless of the dimension, initial deflection, and the properties of a hoop. This novel result enables us to accurately predict the maximum jump height of a hoop with known initial conditions and drag coefficient without resorting to a numerical computation. Our model reduces the optimization of the hoop geometry for maximizing the jump height to a simple algebraic problem.

  2. Analytical and multibody modeling for the power analysis of standing jumps.

    PubMed

    Palmieri, G; Callegari, M; Fioretti, S

    2015-01-01

    Two methods for the power analysis of standing jumps are proposed and compared in this article. The first method is based on a simple analytical formulation which requires as input the coordinates of the center of gravity in three specified instants of the jump. The second method is based on a multibody model that simulates the jumps processing the data obtained by a three-dimensional (3D) motion capture system and the dynamometric measurements obtained by the force platforms. The multibody model is developed with OpenSim, an open-source software which provides tools for the kinematic and dynamic analyses of 3D human body models. The study is focused on two of the typical tests used to evaluate the muscular activity of lower limbs, which are the counter movement jump and the standing long jump. The comparison between the results obtained by the two methods confirms that the proposed analytical formulation is correct and represents a simple tool suitable for a preliminary analysis of total mechanical work and the mean power exerted in standing jumps. PMID:24960184

  3. Fe Mg interdiffusion in wadsleyite: The role of pressure, temperature and composition and the magnitude of jump in diffusion rates at the 410 km discontinuity

    NASA Astrophysics Data System (ADS)

    Holzapfel, C.; Chakraborty, S.; Rubie, D. C.; Frost, D. J.

    2009-01-01

    The limited stability range of wadsleyite seriously impedes our ability to constrain kinetic parameters (e.g. activation energy, activation volume) using experiments carried out over a wide range of temperature and pressure. We have carried out a new measurement to extend the experimental temperature range of the dataset of Chakraborty et al. [Chakraborty, S., Knoche, R., Schulze, H., Rubie, D.C., Dobson, D., Ross, N.L., Angel, R.J., 1999. Enhancement of cation diffusion rates across the 410-kilometer discontinuity in Earth's mantle. Science 283, 362-365] to the maximum possible limit for that experimental setup. This result allows us to (i) obtain a better constrained value for activation energy for Fe-Mg diffusion in wadsleyite at 15 GPa (˜230 kJ/mol), and (ii) characterize the compositional dependence of Fe-Mg diffusion in wadsleyite. Evaluation of all data available in the literature [i.e. this study; Chakraborty et al., 1999; Farber, D.L., Williams, Q., Ryerson, F.J., 2000. Divalent cation diffusion in Mg 2SiO 4 spinel (ringwoodite), β-phase (wadsleyite), and olivine: implications for the electrical conductivity of the mantle. J. Geophys. Res. 105, 513-529; Kubo, T., Shimojuko, A., Ohtani, E., 2004. Fe-Mg interdiffusion rates in wadsleyite and the diffusivity jump at the 410 km discontinuity. Phys. Chem. Miner. 31, 456-464] reveals that there is a strong pressure dependence of the diffusion coefficient (activation volume ≈14 cm 3/mol). The expression D (m/s)=1.24×10-6 exp[11.8(0.86-X)] exp{-[]229,000+(P-15)×13.9×10 J/mol}/{RT} is an excellent description of all experimentally measured diffusion coefficients in wadsleyite and points to consistency between the various studies from different laboratories that used different methods. This expression should provide a robust basis for extrapolation of diffusion data for wadsleyite to conditions removed from the experimental ones, e.g. for modeling processes in the interiors of cold subducting slabs. Moreover

  4. Integration of the Total Lightning Jump Algorithm into Current Operational Warning Environment Conceptual Models

    NASA Technical Reports Server (NTRS)

    Schultz, Christopher J.; Carey, Lawerence D.; Schultz, Elise V.; Stano, Geoffery T.; Kozlowski, Danielle M.; Goodman, Steven

    2012-01-01

    Key points that this analysis will begin to address are: 1)What physically is going on in the cloud when there is a jump in lightning? - Updraft variations, ice fluxes. 2)How do these processes fit in with severe storm conceptual models? 3)What would this information provide an end user (i.e., the forecaster)? - Relate LJA to radar observations, like changes in reflectivity, MESH, VIL, etc. based multi-Doppler derived physical relationships 4) How do we best transistionthis algorithm into the warning decision process. The known relationship between lightning updraft strength/volume and precipitation ice mass production can be extended to the concept of the lightning jump. Examination of the first lightning jump times from 329 storms in Schultz et al. shows an increase in the mean reflectivity profile and mixed phase echo volume during the 10 minutes prior to the lightning jump. Limited dual-Doppler results show that the largest lightning jumps are well correlated in time with increases in updraft strength/volume and precipitation ice mass production; however, the smaller magnitude lightning jumps appear to have more subtle relationships to updraft and ice mass characteristics.

  5. Lagrangian model of copepod dynamics: Clustering by escape jumps in turbulence

    NASA Astrophysics Data System (ADS)

    Ardeshiri, H.; Benkeddad, I.; Schmitt, F. G.; Souissi, S.; Toschi, F.; Calzavarini, E.

    2016-04-01

    Planktonic copepods are small crustaceans that have the ability to swim by quick powerful jumps. Such an aptness is used to escape from high shear regions, which may be caused either by flow perturbations, produced by a large predator (i.e., fish larvae), or by the inherent highly turbulent dynamics of the ocean. Through a combined experimental and numerical study, we investigate the impact of jumping behavior on the small-scale patchiness of copepods in a turbulent environment. Recorded velocity tracks of copepods displaying escape response jumps in still water are here used to define and tune a Lagrangian copepod (LC) model. The model is further employed to simulate the behavior of thousands of copepods in a fully developed hydrodynamic turbulent flow obtained by direct numerical simulation of the Navier-Stokes equations. First, we show that the LC velocity statistics is in qualitative agreement with available experimental observations of copepods in turbulence. Second, we quantify the clustering of LC, via the fractal dimension D2. We show that D2 can be as low as ˜2.3 and that it critically depends on the shear-rate sensitivity of the proposed LC model, in particular it exhibits a minimum in a narrow range of shear-rate values. We further investigate the effect of jump intensity, jump orientation, and geometrical aspect ratio of the copepods on the small-scale spatial distribution. At last, possible ecological implications of the observed clustering on encounter rates and mating success are discussed.

  6. Regression models of sprint, vertical jump, and change of direction performance.

    PubMed

    Swinton, Paul A; Lloyd, Ray; Keogh, Justin W L; Agouris, Ioannis; Stewart, Arthur D

    2014-07-01

    It was the aim of the present study to expand on previous correlation analyses that have attempted to identify factors that influence performance of jumping, sprinting, and changing direction. This was achieved by using a regression approach to obtain linear models that combined anthropometric, strength, and other biomechanical variables. Thirty rugby union players participated in the study (age: 24.2 ± 3.9 years; stature: 181.2 ± 6.6 cm; mass: 94.2 ± 11.1 kg). The athletes' ability to sprint, jump, and change direction was assessed using a 30-m sprint, vertical jump, and 505 agility test, respectively. Regression variables were collected during maximum strength tests (1 repetition maximum [1RM] deadlift and squat) and performance of fast velocity resistance exercises (deadlift and jump squat) using submaximum loads (10-70% 1RM). Force, velocity, power, and rate of force development (RFD) values were measured during fast velocity exercises with the greatest values produced across loads selected for further analysis. Anthropometric data, including lengths, widths, and girths were collected using a 3-dimensional body scanner. Potential regression variables were first identified using correlation analyses. Suitable variables were then regressed using a best subsets approach. Three factor models generally provided the most appropriate balance between explained variance and model complexity. Adjusted R values of 0.86, 0.82, and 0.67 were obtained for sprint, jump, and change of direction performance, respectively. Anthropometric measurements did not feature in any of the top models because of their strong association with body mass. For each performance measure, variance was best explained by relative maximum strength. Improvements in models were then obtained by including velocity and power values for jumping and sprinting performance, and by including RFD values for change of direction performance. PMID:24345969

  7. Integration of the Total Lightning Jump Algorithm into Current Operational Warning Environment Conceptual Models

    NASA Technical Reports Server (NTRS)

    Schultz, C. J.; Carey, L. D.; Schultz, E. V.; Stano, G. T.; Blakeslee, R.; Goodman, S. J.

    2014-01-01

    The purpose of the total lightning jump algorithm (LJA) is to provide forecasters with an additional tool to identify potentially hazardous thunderstorms, yielding increased confidence in decisions within the operational warning environment. The LJA was first developed to objectively indentify rapid increases in total lightning (also termed "lightning jumps") that occur prior to the observance of severe and hazardous weather (Williams et al. 1999, Schultz et al. 2009, Gatlin and Goodman 2010, Schultz et al. 2011). However, a physical and framework leading up to and through the time of a lightning jump is still lacking within the literature. Many studies infer that there is a large increase in the updraft prior to or during the jump, but are not specific on what properties of the updraft are indeed increasing (e.g., maximum updraft speed vs volume or both) likely because these properties were not specifically observed. Therefore, the purpose of this work is to physically associate lightning jump occurrence to polarimetric and multi-Doppler radar measured thunderstorm intensity metrics and severe weather occurrence, thus providing a conceptual model that can be used to adapt the LJA to current operations.

  8. Integration of the Total Lightning Jump Algorithm into Current Operational Warning Environment Conceptual Models

    NASA Technical Reports Server (NTRS)

    Shultz, Christopher J.; Carey, Lawrence D.; Schultz, Elise V.; Stano, Geoffrey T.; Blakeslee, Richard J.; Goodman, Steven J.

    2014-01-01

    The presence and rates of total lightning are both correlated to and physically dependent upon storm updraft strength, mixed phase precipitation volume and the size of the charging zone. The updraft modulates the ingredients necessary for electrification within a thunderstorm, while the updraft also plays a critical role in the development of severe and hazardous weather. Therefore utilizing this relationship, the monitoring of lightning rates and jumps provides an additional piece of information on the evolution of a thunderstorm, more often than not, at higher temporal resolution than current operational radar systems. This correlation is the basis for the total lightning jump algorithm that has been developed in recent years. Currently, the lightning jump algorithm is being tested in two separate but important efforts. Schultz et al. (2014; AMS 10th Satellite Symposium) is exploring the transition of the algorithm from its research based formulation to a fully objective algorithm that includes storm tracking, Geostationary Lightning Mapper (GLM) Proxy data and the lightning jump algorithm. Chronis et al. (2014; this conference) provides context for the transition to current operational forecasting using lightning mapping array based products. However, what remains is an end to end physical and dynamical basis for relating lightning rates to severe storm manifestation, so the forecaster has a reason beyond simple correlation to utilize the lightning jump algorithm within their severe storm conceptual models. Therefore, the physical basis for the lightning jump algorithm in relation to severe storm dynamics and microphysics is a key component that must be further explored. Many radar studies have examined flash rates and their relation to updraft strength, updraft volume, precipitation-sized ice mass, etc.; however, relation specifically to lightning jumps is fragmented within the literature. Thus the goal of this study is to use multiple Doppler techniques to

  9. Physical and Dynamical Linkages between Lightning Jumps and Storm Conceptual Models

    NASA Technical Reports Server (NTRS)

    Schultz, Christopher J.; Carey, Lawrence D.; Schultz, Elise V.; Blakeslee, Richard J.; Goodman, Steven J.

    2014-01-01

    The presence and rates of total lightning are both correlated to and physically dependent upon storm updraft strength, mixed phase precipitation volume and the size of the charging zone. The updraft modulates the ingredients necessary for electrification within a thunderstorm, while the updraft also plays a critical role in the development of severe and hazardous weather. Therefore utilizing this relationship, the monitoring of lightning rates and jumps provides an additional piece of information on the evolution of a thunderstorm, more often than not, at higher temporal resolution than current operational radar systems. This correlation is the basis for the total lightning jump algorithm that has been developed in recent years. Currently, the lightning jump algorithm is being tested in two separate but important efforts. Schultz et al. (2014; this conference) is exploring the transition of the algorithm from its research based formulation to a fully objective algorithm that includes storm tracking, Geostationary Lightning Mapper (GLM) Proxy data and the lightning jump algorithm. Chronis et al. (2014; this conference) provides context for the transition to current operational forecasting using lightning mapping array based products. However, what remains is an end-to-end physical and dynamical basis for coupling total lightning flash rates to severe storm manifestation, so the forecaster has a reason beyond simple correlation to utilize the lightning jump algorithm within their severe storm conceptual models. Therefore, the physical basis for the lightning jump algorithm in relation to severe storm dynamics and microphysics is a key component that must be further explored. Many radar studies have examined flash rates and their relationship to updraft strength, updraft volume, precipitation-sized ice mass, etc.; however, their relationship specifically to lightning jumps is fragmented within the literature. Thus the goal of this study is to use multiple Doppler and

  10. Physical and Dynamical Linkages Between Lightning Jumps and Storm Conceptual Models

    NASA Technical Reports Server (NTRS)

    Schultz, Christopher J.; Carey, Lawrence D.; Schultz, Elise V.; Blakeslee, Richard J.; Goodman, Steven J.

    2014-01-01

    The presence and rates of total lightning are both correlated to and physically dependent upon storm updraft strength, mixed phase precipitation volume and the size of the charging zone. The updraft modulates the ingredients necessary for electrification within a thunderstorm, while the updraft also plays a critical role in the development of severe and hazardous weather. Therefore utilizing this relationship, the monitoring of lightning rates and jumps provides an additional piece of information on the evolution of a thunderstorm, more often than not, at higher temporal resolution than current operational radar systems. This correlation is the basis for the total lightning jump algorithm that has been developed in recent years. Currently, the lightning jump algorithm is being tested in two separate but important efforts. Schultz et al. (2014; this conference) is exploring the transition of the algorithm from its research based formulation to a fully objective algorithm that includes storm tracking, Geostationary Lightning Mapper (GLM) Proxy data and the lightning jump algorithm. Chronis et al. (2014) provides context for the transition to current operational forecasting using lightning mapping array based products. However, what remains is an end-to-end physical and dynamical basis for coupling total lightning flash rates to severe storm manifestation, so the forecaster has a reason beyond simple correlation to utilize the lightning jump algorithm within their severe storm conceptual models. Therefore, the physical basis for the lightning jump algorithm in relation to severe storm dynamics and microphysics is a key component that must be further explored. Many radar studies have examined flash rates and their relationship to updraft strength, updraft volume, precipitation-sized ice mass, etc.; however, their relationship specifically to lightning jumps is fragmented within the literature. Thus the goal of this study is to use multiple Doppler and polarimetric

  11. Framework for non-coherent interface models at finite displacement jumps and finite strains

    NASA Astrophysics Data System (ADS)

    Ottosen, Niels Saabye; Ristinmaa, Matti; Mosler, Jörn

    2016-05-01

    This paper deals with a novel constitutive framework suitable for non-coherent interfaces, such as cracks, undergoing large deformations in a geometrically exact setting. For this type of interface, the displacement field shows a jump across the interface. Within the engineering community, so-called cohesive zone models are frequently applied in order to describe non-coherent interfaces. However, for existing models to comply with the restrictions imposed by (a) thermodynamical consistency (e.g., the second law of thermodynamics), (b) balance equations (in particular, balance of angular momentum) and (c) material frame indifference, these models are essentially fiber models, i.e. models where the traction vector is collinear with the displacement jump. This constraints the ability to model shear and, in addition, anisotropic effects are excluded. A novel, extended constitutive framework which is consistent with the above mentioned fundamental physical principles is elaborated in this paper. In addition to the classical tractions associated with a cohesive zone model, the main idea is to consider additional tractions related to membrane-like forces and out-of-plane shear forces acting within the interface. For zero displacement jump, i.e. coherent interfaces, this framework degenerates to existing formulations presented in the literature. For hyperelasticity, the Helmholtz energy of the proposed novel framework depends on the displacement jump as well as on the tangent vectors of the interface with respect to the current configuration - or equivalently - the Helmholtz energy depends on the displacement jump and the surface deformation gradient. It turns out that by defining the Helmholtz energy in terms of the invariants of these variables, all above-mentioned fundamental physical principles are automatically fulfilled. Extensions of the novel framework necessary for material degradation (damage) and plasticity are also covered.

  12. Multispecies diffusion models: A study of uranyl species diffusion

    NASA Astrophysics Data System (ADS)

    Liu, Chongxuan; Shang, Jianying; Zachara, John M.

    2011-12-01

    Rigorous numerical description of multispecies diffusion requires coupling of species, charge, and aqueous and surface complexation reactions that collectively affect diffusive fluxes. The applicability of a fully coupled diffusion model is, however, often constrained by the availability of species self-diffusion coefficients, as well as by computational complication in imposing charge conservation. In this study, several diffusion models with variable complexity in charge and species coupling were formulated and compared to describe reactive multispecies diffusion in groundwater. Diffusion of uranyl [U(VI)] species was used as an example in demonstrating the effectiveness of the models in describing multispecies diffusion. Numerical simulations found that a diffusion model with a single, common diffusion coefficient for all species was sufficient to describe multispecies U(VI) diffusion under a steady state condition of major chemical composition, but not under transient chemical conditions. Simulations revealed that for multispecies U(VI) diffusion under transient chemical conditions, a fully coupled diffusion model could be well approximated by a component-based diffusion model when the diffusion coefficient for each chemical component was properly selected. The component-based diffusion model considers the difference in diffusion coefficients between chemical components, but not between the species within each chemical component. This treatment significantly enhanced computational efficiency at the expense of minor charge conservation. The charge balance in the component-based diffusion model can be enforced, if necessary, by adding a secondary migration term resulting from model simplification. The effect of ion activity coefficient gradients on multispecies diffusion is also discussed. The diffusion models were applied to describe U(VI) diffusive mass transfer in intragranular domains in two sediments collected from U.S. Department of Energy's Hanford 300A

  13. A Comprehensive Model of Electric-Field-Enhanced Jumping-Droplet Condensation on Superhydrophobic Surfaces.

    PubMed

    Birbarah, Patrick; Li, Zhaoer; Pauls, Alexander; Miljkovic, Nenad

    2015-07-21

    Superhydrophobic micro/nanostructured surfaces for dropwise condensation have recently received significant attention due to their potential to enhance heat transfer performance by shedding positively charged water droplets via coalescence-induced droplet jumping at length scales below the capillary length and allowing the use of external electric fields to enhance droplet removal and heat transfer, in what has been termed electric-field-enhanced (EFE) jumping-droplet condensation. However, achieving optimal EFE conditions for enhanced heat transfer requires capturing the details of transport processes that is currently lacking. While a comprehensive model has been developed for condensation on micro/nanostructured surfaces, it cannot be applied for EFE condensation due to the dynamic droplet-vapor-electric field interactions. In this work, we developed a comprehensive physical model for EFE condensation on superhydrophobic surfaces by incorporating individual droplet motion, electrode geometry, jumping frequency, field strength, and condensate vapor-flow dynamics. As a first step toward our model, we simulated jumping droplet motion with no external electric field and validated our theoretical droplet trajectories to experimentally obtained trajectories, showing excellent temporal and spatial agreement. We then incorporated the external electric field into our model and considered the effects of jumping droplet size, electrode size and geometry, condensation heat flux, and droplet jumping direction. Our model suggests that smaller jumping droplet sizes and condensation heat fluxes require less work input to be removed by the external fields. Furthermore, the results suggest that EFE electrodes can be optimized such that the work input is minimized depending on the condensation heat flux. To analyze overall efficiency, we defined an incremental coefficient of performance and showed that it is very high (∼10(6)) for EFE condensation. We finally proposed mechanisms

  14. DiffuseModel: Modeling the diffuse ultraviolet background

    NASA Astrophysics Data System (ADS)

    Murthy, Jayant

    2015-12-01

    DiffuseModel calculates the scattered radiation from dust scattering in the Milky Way based on stars from the Hipparcos catalog. It uses Monte Carlo to implement multiple scattering and assumes a user-supplied grid for the dust distribution. The output is a FITS file with the diffuse light over the Galaxy. It is intended for use in the UV (900 - 3000 A) but may be modified for use in other wavelengths and galaxies.

  15. Option pricing for stochastic volatility model with infinite activity Lévy jumps

    NASA Astrophysics Data System (ADS)

    Gong, Xiaoli; Zhuang, Xintian

    2016-08-01

    The purpose of this paper is to apply the stochastic volatility model driven by infinite activity Lévy processes to option pricing which displays infinite activity jumps behaviors and time varying volatility that is consistent with the phenomenon observed in underlying asset dynamics. We specially pay attention to three typical Lévy processes that replace the compound Poisson jumps in Bates model, aiming to capture the leptokurtic feature in asset returns and volatility clustering effect in returns variance. By utilizing the analytical characteristic function and fast Fourier transform technique, the closed form formula of option pricing can be derived. The intelligent global optimization search algorithm called Differential Evolution is introduced into the above highly dimensional models for parameters calibration so as to improve the calibration quality of fitted option models. Finally, we perform empirical researches using both time series data and options data on financial markets to illustrate the effectiveness and superiority of the proposed method.

  16. Integration of the Total Lightning Jump Algorithm into Current Operational Warning Environment Conceptual Models

    NASA Technical Reports Server (NTRS)

    Schultz, Christopher J.; Carey, Lawrence D.; Schultz, Elise V.; Stano, Geoffrey T.; Gatlin, Patrick N.

    2013-01-01

    The presence and rates of total lightning are both correlated to and physically dependent upon storm updraft strength, mixed phase precipitation volume and the size of the charging zone. The updraft modulates the ingredients necessary for electrification within a thunderstorm, while the updraft also plays a critical role in the development of severe and hazardous weather. Therefore utilizing this relationship, the monitoring of lightning rates and jumps provides an additional piece of information on the evolution of a thunderstorm, more often than not, at higher temporal resolution than current operational radar systems. This correlation is the basis for the total lightning jump algorithm that has been developed in recent years. In order to become a viable option for operational forecasters to incorporate into their severe storm monitoring process, the total lightning jump must be placed into the framework of several severe storm conceptual models (e.g., radar evolution, storm morphology) which forecasters have built through training and experience. Thus, one of the goals of this study is to examine and relate the lightning jump concept to often used radar parameters (e.g., dBZ vertical structure, VIL, MESH, MESO/shear) in the warning environment. Tying lightning trends and lightning jump occurrences to these radar based parameters will provide forecasters with an additional tool that they can use to build an accurate realtime depiction as to what is going on in a given environment. Furthermore, relating the lightning jump concept to these parameters could also increase confidence in a warning decision they have already made, help tip the scales on whether or not to warn on a given storm, or to draw the forecaster s attention to a particular storm that is rapidly developing. Furthermore the lightning information will add vital storm scale information in regions that are not well covered by radar, or when radar failures occur. The physical basis for the lightning

  17. Integration of the Total Lightning Jump Algorithm into Current Operational Warning Environment Conceptual Models

    NASA Technical Reports Server (NTRS)

    Schultz, Chris; Carey, Larry; Schultz, Elise V.; Stano, Geoffrey; Gatlin, Patrick N.; Kozlowski, Danielle M.; Blakeslee, Rich J.; Goodman, Steve

    2013-01-01

    Key points this analysis will address: 1) What physically is going on in the cloud when there is a jump in lightning? -- Updraft variations, Ice fluxes 2) How do these processes fit in with severe storm conceptual models? 3) What would this information provide an end user? --Relate LJA to radar observations, like changes in reflectivity, MESH, VIL, etc. based multi -Doppler derived physical relationships

  18. Optimizing Thomson's jumping ring

    NASA Astrophysics Data System (ADS)

    Tjossem, Paul J. H.; Brost, Elizabeth C.

    2011-04-01

    The height to which rings will jump in a Thomson jumping ring apparatus is the central question posed by this popular lecture demonstration. We develop a simple time-averaged inductive-phase-lag model for the dependence of the jump height on the ring material, its mass, and temperature and apply it to measurements of the jump height for a set of rings made by slicing copper and aluminum alloy pipe into varying lengths. The data confirm a peak jump height that grows, narrows, and shifts to smaller optimal mass when the rings are cooled to 77 K. The model explains the ratio of the cooled/warm jump heights for a given ring, the reduction in optimal mass as the ring is cooled, and the shape of the mass resonance. The ring that jumps the highest is found to have a characteristic resistance equal to the inductive reactance of the set of rings.

  19. The exit-time problem for a Markov jump process

    SciTech Connect

    Burch, N.; D'Elia, Marta; Lehoucq, Richard B.

    2014-12-15

    The purpose of our paper is to consider the exit-time problem for a finite-range Markov jump process, i.e, the distance the particle can jump is bounded independent of its location. Such jump diffusions are expedient models for anomalous transport exhibiting super-diffusion or nonstandard normal diffusion. We refer to the associated deterministic equation as a volume-constrained nonlocal diffusion equation. The volume constraint is the nonlocal analogue of a boundary condition necessary to demonstrate that the nonlocal diffusion equation is well-posed and is consistent with the jump process. A critical aspect of the analysis is a variational formulation and a recently developed nonlocal vector calculus. Furthermore, this calculus allows us to pose nonlocal backward and forward Kolmogorov equations, the former equation granting the various moments of the exit-time distribution.

  20. The exit-time problem for a Markov jump process

    NASA Astrophysics Data System (ADS)

    Burch, N.; D'Elia, M.; Lehoucq, R. B.

    2014-12-01

    The purpose of this paper is to consider the exit-time problem for a finite-range Markov jump process, i.e, the distance the particle can jump is bounded independent of its location. Such jump diffusions are expedient models for anomalous transport exhibiting super-diffusion or nonstandard normal diffusion. We refer to the associated deterministic equation as a volume-constrained nonlocal diffusion equation. The volume constraint is the nonlocal analogue of a boundary condition necessary to demonstrate that the nonlocal diffusion equation is well-posed and is consistent with the jump process. A critical aspect of the analysis is a variational formulation and a recently developed nonlocal vector calculus. This calculus allows us to pose nonlocal backward and forward Kolmogorov equations, the former equation granting the various moments of the exit-time distribution.

  1. Exact representation of the asymptotic drift speed and diffusion matrix for a class of velocity-jump processes

    NASA Astrophysics Data System (ADS)

    Mascia, Corrado

    2016-01-01

    This paper examines a class of linear hyperbolic systems which generalizes the Goldstein-Kac model to an arbitrary finite number of speeds vi with transition rates μij. Under the basic assumptions that the transition matrix is symmetric and irreducible, and the differences vi -vj generate all the space, the system exhibits a large-time behavior described by a parabolic advection-diffusion equation. The main contribution is to determine explicit formulas for the asymptotic drift speed and diffusion matrix in term of the kinetic parameters vi and μij, establishing a complete connection between microscopic and macroscopic coefficients. It is shown that the drift speed is the arithmetic mean of the velocities vi. The diffusion matrix has a more complicate representation, based on the graph with vertices the velocities vi and arcs weighted by the transition rates μij. The approach is based on an exhaustive analysis of the dispersion relation and on the application of a variant of the Kirchoff's matrix tree Theorem from graph theory.

  2. A new experimental model to study force depression: the Drosophila jump muscle

    PubMed Central

    Koppes, Ryan A.; Swank, Douglas M.

    2014-01-01

    Force depression (FD) is a decrease in isometric force following active muscle shortening. Despite being well characterized experimentally, its underlying mechanism remains unknown. To develop a new, genetically manipulatable experimental model that would greatly improve our ability to study the underlying mechanism(s) of FD, we tested the Drosophila jump muscle for classical FD behavior. Steady-state force generation following active shortening decreased by 2, 8, and 11% of maximum isometric force with increasing shortening amplitudes of 5, 10, and 20% of optimal fiber length, and decreased by 11, 8, and 5% with increasing shortening velocities of 4, 20, and 200% of optimal fiber length per second. These steady-state FD (FDSS) characteristics of Drosophila jump muscle mimic those observed in mammalian skeletal muscle. A double exponential fit of transient force recovery following shortening identified two separate phases of force recovery: a rapid initial force redevelopment, and a slower recovery toward steady state. This analysis showed the slower rate of force redevelopment to be inversely proportional to the amount of FDSS, while the faster rate did not correlate with FDSS. This suggests that the mechanism behind the slower, most likely cross-bridge cycling rate, influences the amount of FDSS. Thus the jump muscle, when coupled with the genetic mutability of its sarcomere proteins, offers a unique and powerful experimental model to explore the underlying mechanism behind FD. PMID:24790016

  3. A new experimental model to study force depression: the Drosophila jump muscle.

    PubMed

    Koppes, Ryan A; Swank, Douglas M; Corr, David T

    2014-06-15

    Force depression (FD) is a decrease in isometric force following active muscle shortening. Despite being well characterized experimentally, its underlying mechanism remains unknown. To develop a new, genetically manipulatable experimental model that would greatly improve our ability to study the underlying mechanism(s) of FD, we tested the Drosophila jump muscle for classical FD behavior. Steady-state force generation following active shortening decreased by 2, 8, and 11% of maximum isometric force with increasing shortening amplitudes of 5, 10, and 20% of optimal fiber length, and decreased by 11, 8, and 5% with increasing shortening velocities of 4, 20, and 200% of optimal fiber length per second. These steady-state FD (FDSS) characteristics of Drosophila jump muscle mimic those observed in mammalian skeletal muscle. A double exponential fit of transient force recovery following shortening identified two separate phases of force recovery: a rapid initial force redevelopment, and a slower recovery toward steady state. This analysis showed the slower rate of force redevelopment to be inversely proportional to the amount of FDSS, while the faster rate did not correlate with FDSS. This suggests that the mechanism behind the slower, most likely cross-bridge cycling rate, influences the amount of FDSS. Thus the jump muscle, when coupled with the genetic mutability of its sarcomere proteins, offers a unique and powerful experimental model to explore the underlying mechanism behind FD. PMID:24790016

  4. Jump of the minimal site and a new correlation function in the Bak-Sneppen model

    NASA Astrophysics Data System (ADS)

    Yang, C. B.; Cai, X.

    2001-08-01

    A new type of spatio-temporal correlation function for the process approaching the self-organized criticality is investigated within the Bak-Sneppen model for biological evolution. In terms of the ``directional shorter distance'' between the two sites with minimum fitness at two successive updates, the correlation function is defined and studied numerically for the nearest- and random-neighbor versions of the model. Qualitatively different behaviors of the jump of the minimal site in the two models are presented, and the behaviors of the correlation functions are shown also different.

  5. Jumping in frogs: assessing the design of the skeletal system by anatomically realistic modeling and forward dynamic simulation.

    PubMed

    Kargo, William J; Nelson, Frank; Rome, Lawrence C

    2002-06-01

    Comparative musculoskeletal modeling represents a tool to understand better how motor system parameters are fine-tuned for specific behaviors. Frog jumping is a behavior in which the physical properties of the body and musculotendon actuators may have evolved specifically to extend the limits of performance. Little is known about how the joints of the frog contribute to and limit jumping performance. To address these issues, we developed a skeletal model of the frog Rana pipiens that contained realistic bones, joints and body-segment properties. We performed forward dynamic simulations of jumping to determine the minimal number of joint degrees of freedom required to produce maximal-distance jumps and to produce jumps of varied take-off angles. The forward dynamics of the models was driven with joint torque patterns determined from inverse dynamic analysis of jumping in experimental frogs. When the joints were constrained to rotate in the extension-flexion plane, the simulations produced short jumps with a fixed angle of take-off. We found that, to produce maximal-distance jumping, the skeletal system of the frog must minimally include a gimbal joint at the hip (three rotational degrees of freedom), a universal Hooke's joint at the knee (two rotational degrees of freedom) and pin joints at the ankle, tarsometatarsal, metatarsophalangeal and iliosacral joints (one rotational degree of freedom). One of the knee degrees of freedom represented a unique kinematic mechanism (internal rotation about the long axis of the tibiofibula) and played a crucial role in bringing the feet under the body so that maximal jump distances could be attained. Finally, the out-of-plane degrees of freedom were found to be essential to enable the frog to alter the angle of take-off and thereby permit flexible neuromotor control. The results of this study form a foundation upon which additional model subsystems (e.g. musculotendon and neural) can be added to test the integrative action of the

  6. In Vivo Facilitated Diffusion Model

    PubMed Central

    Bauer, Maximilian; Metzler, Ralf

    2013-01-01

    Under dilute in vitro conditions transcription factors rapidly locate their target sequence on DNA by using the facilitated diffusion mechanism. However, whether this strategy of alternating between three-dimensional bulk diffusion and one-dimensional sliding along the DNA contour is still beneficial in the crowded interior of cells is highly disputed. Here we use a simple model for the bacterial genome inside the cell and present a semi-analytical model for the in vivo target search of transcription factors within the facilitated diffusion framework. Without having to resort to extensive simulations we determine the mean search time of a lac repressor in a living E. coli cell by including parameters deduced from experimental measurements. The results agree very well with experimental findings, and thus the facilitated diffusion picture emerges as a quantitative approach to gene regulation in living bacteria cells. Furthermore we see that the search time is not very sensitive to the parameters characterizing the DNA configuration and that the cell seems to operate very close to optimal conditions for target localization. Local searches as implied by the colocalization mechanism are only found to mildly accelerate the mean search time within our model. PMID:23349772

  7. Cosmic ray anisotropy in fractional differential models of anomalous diffusion

    SciTech Connect

    Uchaikin, V. V.

    2013-06-15

    The problem of galactic cosmic ray anisotropy is considered in two versions of the fractional differential model for anomalous diffusion. The simplest problem of cosmic ray propagation from a point instantaneous source in an unbounded medium is used as an example to show that the transition from the standard diffusion model to the Lagutin-Uchaikin fractional differential model (with characteristic exponent {alpha} = 3/5 and a finite velocity of free particle motion), which gives rise to a knee in the energy spectrum at 10{sup 6} GeV, increases the anisotropy coefficient only by 20%, while the anisotropy coefficient in the Lagutin-Tyumentsev model (with exponents {alpha} = 0.3 and {beta} = 0.8, a long stay of particles in traps, and an infinite velocity of their jumps) is close to one. This is because the parameters of the Lagutin-Tyumentsev model have been chosen improperly.

  8. Quantum jump model for a system with a finite-size environment

    NASA Astrophysics Data System (ADS)

    Suomela, S.; Kutvonen, A.; Ala-Nissila, T.

    2016-06-01

    Measuring the thermodynamic properties of open quantum systems poses a major challenge. A calorimetric detection has been proposed as a feasible experimental scheme to measure work and fluctuation relations in open quantum systems. However, the detection requires a finite size for the environment, which influences the system dynamics. This process cannot be modeled with the standard stochastic approaches. We develop a quantum jump model suitable for systems coupled to a finite-size environment. We use the method to study the common fluctuation relations and prove that they are satisfied.

  9. Markov Jump-Linear Performance Models for Recoverable Flight Control Computers

    NASA Technical Reports Server (NTRS)

    Zhang, Hong; Gray, W. Steven; Gonzalez, Oscar R.

    2004-01-01

    Single event upsets in digital flight control hardware induced by atmospheric neutrons can reduce system performance and possibly introduce a safety hazard. One method currently under investigation to help mitigate the effects of these upsets is NASA Langley s Recoverable Computer System. In this paper, a Markov jump-linear model is developed for a recoverable flight control system, which will be validated using data from future experiments with simulated and real neutron environments. The method of tracking error analysis and the plan for the experiments are also described.

  10. Field-induced magnetization jumps and quantum criticality in the 2D J-Q model

    NASA Astrophysics Data System (ADS)

    Iaizzi, Adam; Sandvik, Anders

    The J-Q model is a `designer hamiltonian' formed by adding a four spin `Q' term to the standard antiferromagnetic S = 1 / 2 Heisenberg model. The Q term drives a quantum phase transition to a valence-bond solid (VBS) state: a non-magnetic state with a pattern of local singlets which breaks lattice symmetries. The elementary excitations of the VBS are triplons, i.e. gapped S=1 quasiparticles. There is considerable interest in the quantum phase transition between the Néel and VBS states as an example of deconfined quantum criticality. Near the phase boundary, triplons deconfine into pairs of bosonic spin-1/2 excitations known as spinons. Using exact diagonalization and the stochastic series expansion quantum monte carlo method, we study the 2D J-Q model in the presence of an external magnetic field. We use the field to force a nonzero density of magnetic excitations at T=0 and look for signatures of Bose-Einstein condensation of spinons. At higher magnetic fields, there is a jump in the induced magnetization caused by the onset of an effective attractive interaction between magnons on a ferromagnetic background. We characterize the first order quantum phase transition and determine the minimum value of the coupling ratio q ≡ Q / J required to produce this jump. Funded by NSF DMR-1410126.

  11. Modelling the species jump: towards assessing the risk of human infection from novel avian influenzas

    PubMed Central

    Hill, A. A.; Dewé, T.; Kosmider, R.; Von Dobschuetz, S.; Munoz, O.; Hanna, A.; Fusaro, A.; De Nardi, M.; Howard, W.; Stevens, K.; Kelly, L.; Havelaar, A.; Stärk, K.

    2015-01-01

    The scientific understanding of the driving factors behind zoonotic and pandemic influenzas is hampered by complex interactions between viruses, animal hosts and humans. This complexity makes identifying influenza viruses of high zoonotic or pandemic risk, before they emerge from animal populations, extremely difficult and uncertain. As a first step towards assessing zoonotic risk of influenza, we demonstrate a risk assessment framework to assess the relative likelihood of influenza A viruses, circulating in animal populations, making the species jump into humans. The intention is that such a risk assessment framework could assist decision-makers to compare multiple influenza viruses for zoonotic potential and hence to develop appropriate strain-specific control measures. It also provides a first step towards showing proof of principle for an eventual pandemic risk model. We show that the spatial and temporal epidemiology is as important in assessing the risk of an influenza A species jump as understanding the innate molecular capability of the virus. We also demonstrate data deficiencies that need to be addressed in order to consistently combine both epidemiological and molecular virology data into a risk assessment framework. PMID:26473042

  12. Modelling the species jump: towards assessing the risk of human infection from novel avian influenzas.

    PubMed

    Hill, A A; Dewé, T; Kosmider, R; Von Dobschuetz, S; Munoz, O; Hanna, A; Fusaro, A; De Nardi, M; Howard, W; Stevens, K; Kelly, L; Havelaar, A; Stärk, K

    2015-09-01

    The scientific understanding of the driving factors behind zoonotic and pandemic influenzas is hampered by complex interactions between viruses, animal hosts and humans. This complexity makes identifying influenza viruses of high zoonotic or pandemic risk, before they emerge from animal populations, extremely difficult and uncertain. As a first step towards assessing zoonotic risk of influenza, we demonstrate a risk assessment framework to assess the relative likelihood of influenza A viruses, circulating in animal populations, making the species jump into humans. The intention is that such a risk assessment framework could assist decision-makers to compare multiple influenza viruses for zoonotic potential and hence to develop appropriate strain-specific control measures. It also provides a first step towards showing proof of principle for an eventual pandemic risk model. We show that the spatial and temporal epidemiology is as important in assessing the risk of an influenza A species jump as understanding the innate molecular capability of the virus. We also demonstrate data deficiencies that need to be addressed in order to consistently combine both epidemiological and molecular virology data into a risk assessment framework. PMID:26473042

  13. A model of the human triceps surae muscle-tendon complex applied to jumping.

    PubMed

    Bobbert, M F; Huijing, P A; van Ingen Schenau, G J

    1986-01-01

    The purpose of this study was to gain more insight into the behavior of the muscle-tendon complex of human m. triceps surae in jumping. During one-legged vertical jumps of ten subjects ground reaction forces as well as cinematographic data were registered, and electromyograms were recorded from m. soleus and m. gastrocnemius. A model was developed of m. triceps surae, incorporating assumptions concerning dimensions, architecture, force-length and force-velocity relationships of muscle fibers, as well as assumptions concerning dimensions and elastic behavior of tendinous tissue in series with the muscle fibers. The velocity with which origin approaches insertion (V OI) was calculated for m. soleus and m. gastrocnemius using cine film data, and served as input of the model. During the last part of the push-off phase EMG-levels were found to be more or less constant, V OI of m. soleus and m. gastrocnemius rapidly increased, and the plantar flexing moment obtained by solving equations concerning a free body diagram of the foot rapidly declined. A similar decline was observed in the plantar flexing moment obtained by multiplying force calculated with help of the model by estimated moment arm at the ankle. As a result of the decline of exerted force tendon length decreases. According to the model the shortening velocity of tendon reaches higher values than that of muscle fibers. The results of a kinetic analysis demonstrate that during the last part of the push-off phase a combination of high angular velocities with relatively large plantar flexing moments is required. It is concluded that without a compliant tendon m. triceps surae would not be able to satisfy this requirement. PMID:3793737

  14. Validation and influence of anthropometric and kinematic models of obese teenagers in vertical jump performance and mechanical internal energy expenditure.

    PubMed

    Achard de Leluardière, F; Hajri, L N; Lacouture, P; Duboy, J; Frelut, M L; Peres, G

    2006-02-01

    There may be concerns about the validity of kinetic models when studying locomotion in obese subjects (OS). The aim of the present study was to improve and validate a relevant representation of obese subject from four kinetic models. Fourteen teenagers with severe primary obesity (BMI = 40 +/- 5.2 kg/m(2)), were studied during jumping. The jumps were filmed by six cameras (synchronized, 50 Hz), associated with a force-plate (1,000 Hz). All the tested models were valid; the linear mechanical analysis of the jumps gave similar results (p > 0.05); but there were significantly different segment inertias when considering the subjects' abdomen (p < 0.01), which was associated with a significantly higher mechanical internal energy expenditure (p < 0.01) than that estimated from Dempster's and Hanavan's model, by about 40 and 30%. The validation of a modelling specifically for obese subjects will enable a better understanding of their locomotion. PMID:16399510

  15. Finite-dimensional models of diffusion chaos

    NASA Astrophysics Data System (ADS)

    Glyzin, S. D.; Kolesov, A. Yu.; Rozov, N. Kh.

    2010-05-01

    Some parabolic systems of the reaction-diffusion type exhibit the phenomenon of diffusion chaos. Specifically, when the diffusivities decrease proportionally, while the other parameters of a system remain fixed, the system exhibits a chaotic attractor whose dimension increases indefinitely. Various finite-dimensional models of diffusion chaos are considered that represent chains of coupled ordinary differential equations and similar chains of discrete mappings. A numerical analysis suggests that these chains with suitably chosen parameters exhibit chaotic attractors of arbitrarily high dimensions.

  16. Numerical modelling of microdroplet self-propelled jumping on micro-textured surface

    NASA Astrophysics Data System (ADS)

    Attarzadeh, S. M. Reza; Dolatabadi, Ali; Chun Kim, Kyung

    2015-11-01

    Understanding various stages of single and multiple droplet impact on a super-hydrophobic surface is of interest for many industrial applications such as aerospace industry. In this study, the phenomenon of coalescence induced droplets self-propelled jumping on a micro-textured super-hydrophobic surface is numerically simulated using Volume of Fluid (VOF) method. This model mimics the scenario of coalescing cloud-sized particles over the surface structure of an aircraft. The VOF coupled with a dynamic contact angle model is used to simulate the coalescence of two equal size droplets, that are initially placed very closed to each other with their interface overlapping with each other's which triggers the incipience of their coalescence. The textured surface is modeled as a series of equally spaced squared pillars, with 111° as the intrinsic contact angle all over the solid contact area. It is shown that the radial velocity of coalescing liquid bridge is reverted to upward direction due to the counter action of the surface to the basal area of droplet in contact. The presence of air beneath the droplet inside micro grooves which aimed at repelling water droplet is also captured in this model. The simulated results are found in good agreement with experimental observations. The authors gratefully acknowledge the financial support from Natural Sciences and Engineering Research Council of Canada (NSERC), Consortium de Recherche et d'innovation en Aerospatiale au Quebec (CRIAQ), Bombardier Aerospace, Pratt Whitney Canada.

  17. Stress diffusion in models for shear banding

    NASA Astrophysics Data System (ADS)

    Masnada, Elian; Olmsted, Peter

    Understanding shear banding is of utmost importance from both theoretical and experimental point of view and consequently it has been studied for several decades. Despite this study numerous aspects of shear banding remains poorly understood. Because of the intrinsic inhomogeneity in the shear banded state, applicable constitutive models must be include spatial inhomogeneities, leading to a so-called 'diffusive' term in the equation of motion for the slow variables that carry stress. Such terms are also vital in describing the interaction of bulk shear banding flows with walls and incorporation of wall slip. In this work, we consider different sources of 'diffusion' in polymer models in which concentration degrees of freedom are negligible. The simplest models used are consistent with diffusive terms whose origin is intrinsically dissipative, such as due to hydrodynamic interactions. By contrast, models in which elastic effects such as finite chain stiffness contribute to stress diffusion are inconsistent with simple diffusive models, and we propose alternative consistent models

  18. A model of oceanic development by ridge jumping: Opening of the Scotia Sea

    NASA Astrophysics Data System (ADS)

    Maldonado, Andrés; Bohoyo, Fernando; Galindo-Zaldívar, Jesús; Hernández-Molina, Fº. Javier; Lobo, Francisco J.; Lodolo, Emanuele; Martos, Yasmina M.; Pérez, Lara F.; Schreider, Anatoly A.; Somoza, Luis

    2014-12-01

    , where an accretionary prism is identified. Such tectonics, locally affecting up to the most recent deposits, imply that a portion of the primitive oceanic crust is absent. Based on the stratigraphy of the deposits and the magnetic anomalies, an age of 44 Ma is postulated for the initiation of oceanic spreading in the eastern Ona basin, while spreading in the western Ona Basin would have occurred during the early Oligocene. The tectonics, depositional units and the age of the oceanic crust provide additional evidence regarding the Eocene opening of Drake Passage. The initial tectonic fragmentation of the South America-Antarctic Bridge, followed by oceanic spreading, was characterized by jumping of the spreading centers. An Eocene spreading center in the eastern Ona Basin was the precursor of the Scotia Sea. A model comprising four tectonic evolutionary phases is proposed: Phase I, Pacific subduction - Paleocene to middle Eocene; Phase II, eastern Ona back-arc spreading - middle to late Eocene; Phase III, ridge jumping and western Ona back-arc spreading - early Oligocene; and Phase IV, ridge jumping and West Scotia Ridge spreading - early Oligocene to late Miocene. The development of shallow gateways allowed for an initial connection between the Pacific and Atlantic oceans and, hence, initiated the thermal isolation of Antarctica during the middle and late Eocene. Deep gateways that enhanced the full isolation of Antarctica developed in Drake Passage from the Eocene/Oligocene transition onward. A significant correlation is observed between the tectonics, stratigraphic units and major climate events, thereby indicating the influence of the local tectonic and paleoceanographic events of the Southern Ocean on global evolution.

  19. Persistent search in single and multiple confined domains: a velocity-jump process model

    NASA Astrophysics Data System (ADS)

    Poll, Daniel B.; Kilpatrick, Zachary P.

    2016-05-01

    We analyze velocity-jump process models of persistent search for a single target on a bounded domain. The searcher proceeds along ballistic trajectories and is absorbed upon collision with the target boundary. When reaching the domain boundary, the searcher chooses a random direction for its new trajectory. For circular domains and targets, we can approximate the mean first passage time (MFPT) using a Markov chain approximation of the search process. Our analysis and numerical simulations reveal that the time to find the target decreases for targets closer to the domain boundary. When there is a small probability of direction-switching within the domain, we find the time to find the target decreases slightly with the turning probability. We also extend our exit time analysis to the case of partitioned domains, where there is a single target within one of multiple disjoint subdomains. Given an average time of transition between domains < T> , we find that the optimal rate of transition that minimizes the time to find the target obeys {β\\text{min}}\\propto 1/\\sqrt< T> .

  20. Solutions of complete jump relations at discontinuities in a two-and-half-dimensional reconnection model.

    PubMed

    Skender, Marina; Vrsnak, Bojan; Martinis, Mladen

    2003-10-01

    We present an analytic solution of the complete set of jump relations at the rotational discontinuity and the slow-mode shock in a two-and-half-dimensional (2 1/2D) symmetric reconnection model. The solution is used for analyzing the outflow jet characteristics in dependence on the speed and the incidence angle of the inflowing plasma, for a given shear of the inflow magnetic field. It is found that the magnetosonic Mach number of the outflow depends significantly on the incidence angle, the effect being more prominent at larger reconnection rates. The compression increases weakly with increasing reconnection rate. Dynamical changes in the flow/field geometry are found in the transition to the 2D regime: In the region between the rotational discontinuity and the slow-mode shock the direction of flow and the magnetic field become extremely sensitive to the degree of the magnetic field shear in the inflow. Implications for evolutionary systems such as solar flares are discussed. PMID:14683052

  1. Supersonic Jump

    ERIC Educational Resources Information Center

    Muller, Andreas

    2013-01-01

    On October 14,2012, Felix Baumgartner, an Austrian sky-diver, set some new world records for his discipline. Jumping from a height of about 39 km, he reached a top speed of 1342 km/h, becoming the first human being to break the sound barrier in free fall. In order to understand some essential physics aspects of this remarkable feat, we wonder why…

  2. Exploration of the validity of the two-dimensional sagittal plane assumption in modeling the standing long jump.

    PubMed

    Hickox, Lauren J; Ashby, Blake M; Alderink, Gordon J

    2016-05-01

    Most previous standing long jump studies have been based on the assumption of two-dimensional sagittal plane motion with bilateral symmetry. The purpose of this study was to investigate the validity of this assumption. Standing long jump trials were collected using six adult male participants. Each participant stood with a foot on each of two force plates and performed eight standing long jumps for maximal distance. Inverse dynamics analyses were performed for two-dimensional (2D) and three-dimensional (3D) models, and joint moments, powers, and work values were compared. The differences between these models with respect to the validity of the common planar jumping assumption were analyzed. Good agreement was observed between 2D and 3D methods for the lower body, with minimal differences in sagittal plane moments, power, and work for the ankle, knee, and lower back. There were significant, but relatively small differences in the sagittal plane kinematics and kinetics at the hip. For the upper body, the results contradicted the sagittal plane assumption in that significant moments and power were generated about the abduction/adduction axis of the shoulder and a similar amount of work was performed about both abduction/adduction and flexion/extension axes of the shoulder. The elbow also showed significant differences in power and work. These results indicate that an assumption of planar motion should be sufficient for many studies of the standing long jump that only examine lower body movement. However, for studies that include upper body motion, diagnosing injury risk, or investigating gender differences, a 3D model may be more appropriate. PMID:26949101

  3. Two bi-stability jumps in theoretical wind models for massive stars and the implications for luminous blue variable supernovae

    NASA Astrophysics Data System (ADS)

    Petrov, Blagovest; Vink, Jorick S.; Gräfener, Götz

    2016-05-01

    Luminous blue variables (LBVs) have been suggested to be the direct progenitors of supernova Types IIb and IIn, with enhanced mass loss prior to explosion. However, the mechanism of this mass loss is not yet known. Here, we investigate the qualitative behaviour of theoretical stellar wind mass loss as a function of Teff across two bi-stability jumps in blue supergiant regime and also in proximity to the Eddington limit, relevant for LBVs. To investigate the physical ingredients that play a role in the radiative acceleration we calculate blue supergiant wind models with the CMFGEN non-local thermodynamic equilibrium model atmosphere code over an effective temperature range between 30 000 and 8800 K. Although our aim is not to provide new mass-loss rates for BA supergiants, we study and confirm the existence of two bi-stability jumps in mass-loss rates predicted by Vink et al. However, they are found to occur at somewhat lower Teff (20 000 and 9000 K, respectively) than found previously, which would imply that stars may evolve towards lower Teff before strong mass loss is induced by the bi-stability jumps. When the combined effects of the second bi-stability jump and the proximity to Eddington limit are accounted for, we find a dramatic increase in the mass-loss rate by up to a factor of 30. Further investigation of both bi-stability jumps is expected to lead to a better understanding of discrepancies between empirical modelling and theoretical mass-loss rates reported in the literature, and to provide key inputs for the evolution of both normal AB supergiants and LBVs, as well as their subsequent supernova Type II explosions.

  4. Modeling of hydrogen diffusion in metals

    SciTech Connect

    Yang, K.; Cao, M.Z.; Wan, X.J.; Shi, C.X.

    1989-02-01

    The study of the diffusion of hydrogen in metals is very important to further understand the hydrogen embrittlement of metals. To describe the diffusion of hydrogen in metals the diffusion equation deduced from Fick's law under an ideal condition has been generally used and the effect of hydrogen trapping in metals has been neglected. In the process of hydrogen diffusion through a metal, hydrogen fills the traps continuously and the fraction of the traps filled by hydrogen, which have only little effect on the diffusion of hydrogen, may be different at different places because the distribution of hydrogen concentration may be different at different places. Thus the hydrogen diffusion coefficient in the metal may also be different at different positions, i.e., the diffusion coefficient should be affected by time in a dynamic process of hydrogen diffusion through a metal. But in the previous analyses, the above fact is not considered and the hydrogen diffusion coefficient is generally taken as a constant. In the present paper a new model of hydrogen diffusion in metals in which the effect of time is taken into account is developed.

  5. Lithospheric thickness jumps at the S-Atlantic continental margins from satellite gravity data and modelled isostatic anomalies

    NASA Astrophysics Data System (ADS)

    Shahraki, Meysam; Schmeling, Harro; Haas, Peter

    2016-04-01

    Isostatic equilibrium is a good approximation for passive continental margins. In these regions, geoid anomalies are proportional to the local dipole moment of density-depth distributions, which can be used to constrain the thickness of lithospheric jumps and corresponding tectonic stress. We analysed satellite derived geoid data and, after filtering, extracted typical averaged profiles across the Western and Eastern passive margins of the South Atlantic. They show geoid jumps of 8.1 m and 7.0 m for the Argentinian and African sides, respectively. Together with topography data and reasonable assumptions about densities these jumps are interpreted as isostatic geoid anomalies and yield best-fitting crustal and lithospheric thicknesses. They reveal a small asymmetry between the African and S-American crusts and lithospheres by a few kilometers. On both sides, the continental lithosphere is about 15 - 30km thicker than the oceanic lithosphere. To keep such geoid jumps stable over O(100Ma) fully dynamic models show that lithospheric viscosities must be of the order of 1e23 Pa s.

  6. Realizing User-Relevant Conceptual Model for the Ski Jump Venue of the Vancouver 2010 Winter Olympics

    NASA Astrophysics Data System (ADS)

    Teakles, Andrew; Mo, Ruping; Dierking, Carl F.; Emond, Chris; Smith, Trevor; McLennan, Neil; Joe, Paul I.

    2014-01-01

    As was the case for most other Olympic competitions, providing weather guidance for the ski jump and Nordic combined events involved its own set of unique challenges. The extent of these challenges was brought to light before the Vancouver 2010 Winter Olympics during a series of outflow wind events in the 2008/2009 winter season. The interactions with the race officials during the difficult race conditions brought on by the outflows provided a new perspective on the service delivery requirements for the upcoming Olympic Games. In particular, the turbulent nature of the winds and its impact on the ski jump practice events that season highlighted the need of race officials for nowcasting advice at very short time scales (from 2 min to 1 h) and forecast products tailored to their decision-making process. These realizations resulted in last minute modifications to the monitoring strategy leading up to the Olympic Games and required forecasters' conceptual models for flow within the Callaghan Valley to be downscaled further to reflect the evolution of turbulence at the ski jump site. The SNOW-V10 (Science of Nowcasting Olympic Weather for Vancouver 2010) team provided support for these efforts by supplying diagnostic case analyses of important events using numerical weather data and by enhancing the real-time monitoring capabilities at the ski jump venue.

  7. Conformational Diffusion and Helix Formation Kinetics

    SciTech Connect

    Hummer, Gerhard; Garcia, Angel E.; Garde, Shekhar

    2000-09-18

    The time, temperature, and sequence dependences of helix formation kinetics of fully atomistic peptide models in explicit solvent are described quantitatively by a diffusive search within the coil state with barrierless transitions into the helical state. Conformational diffusion leads to nonexponential kinetics and jump-width dependences in temperature jump experiments. (c) 2000 The American Physical Society.

  8. Diffusion Decision Model: Current Issues and History.

    PubMed

    Ratcliff, Roger; Smith, Philip L; Brown, Scott D; McKoon, Gail

    2016-04-01

    There is growing interest in diffusion models to represent the cognitive and neural processes of speeded decision making. Sequential-sampling models like the diffusion model have a long history in psychology. They view decision making as a process of noisy accumulation of evidence from a stimulus. The standard model assumes that evidence accumulates at a constant rate during the second or two it takes to make a decision. This process can be linked to the behaviors of populations of neurons and to theories of optimality. Diffusion models have been used successfully in a range of cognitive tasks and as psychometric tools in clinical research to examine individual differences. In this review, we relate the models to both earlier and more recent research in psychology. PMID:26952739

  9. Dispersing V-type asteroids during the planetary instability in the jumping Jupiter model

    NASA Astrophysics Data System (ADS)

    Brasil, P. I.

    2015-12-01

    V-type asteroids are a particular class of asteroids whose surface mineralogy is associated to a basaltic composition. Currently, the only known source of these asteroids in the Main Belt is (4) Vesta. This asteroid is located in the inner belt (2.1 < a < 2.5 AU), and has associated a dynamical family formed by the impact ejecta of two large craters excavated on its basaltic surface some 2 and 1 Gyr ago, respectively. Thus, many V-type asteroids belong to the Vesta family. However, an increasing number of V-type asteroids is found outside the limits of the family. Some of these asteroids, especially those located in the inner belt, are explained as dynamical fugitives from the family. Others cannot be linked to the Vesta family nor to (4) Vesta, neither dynamically nor mineralogically. The most paradoxal cases are the V-type asteroids found beyond 2.5 AU, in the central (2.5 < a < 2.8 AU) and outer (2.8 < a < 3.2 AU) parts of the Main Belt, where no local source of basaltic material is recognized. In this work, we propose a coherent dynamical mechanism to explain the delivery of V-type asteroids originated in the inner belt to the central and outer belt. This mechanism involves the planetary instability during the epoch when the outer planets were migrating due to their interaction with a disk of planetesimals, some 4 Gyr ago. The instability is caused by mutual planetary encounters in the framework of the jumping Jupiter model with initially five outer planets: Jupiter, Saturn and three ice giants. As a consequence of this instability, an ice giant is temporarily scattered into the asteroid belt and helps to disperse the asteroids in semimajor axis by up to ~0.5 AU. The V-type asteroids dispersed by this mechanism could have originated either in an older cratering event on the surface of (4) Vesta, or in the fragmentation of another basaltic asteroid in the inner belt that likely have existed during the epoch of planetary migration. We tested several

  10. Stochastic models for surface diffusion of molecules

    SciTech Connect

    Shea, Patrick Kreuzer, Hans Jürgen

    2014-07-28

    We derive a stochastic model for the surface diffusion of molecules, starting from the classical equations of motion for an N-atom molecule on a surface. The equation of motion becomes a generalized Langevin equation for the center of mass of the molecule, with a non-Markovian friction kernel. In the Markov approximation, a standard Langevin equation is recovered, and the effect of the molecular vibrations on the diffusion is seen to lead to an increase in the friction for center of mass motion. This effective friction has a simple form that depends on the curvature of the lowest energy diffusion path in the 3N-dimensional coordinate space. We also find that so long as the intramolecular forces are sufficiently strong, memory effects are usually not significant and the Markov approximation can be employed, resulting in a simple one-dimensional model that can account for the effect of the dynamics of the molecular vibrations on the diffusive motion.

  11. A new experimental model for force enhancement: steady-state and transient observations of the Drosophila jump muscle.

    PubMed

    Koppes, Ryan A; Swank, Douglas M; Corr, David T

    2015-10-15

    The increase in steady-state force after active lengthening in skeletal muscle, termed force enhancement (FE), has been observed for nearly one century. Although demonstrated experimentally at various structural levels, the underlying mechanism(s) remain unknown. We recently showed that the Drosophila jump muscle is an ideal model for investigating mechanisms behind muscle physiological properties, because its mechanical characteristics, tested thus far, duplicate those of fast mammalian skeletal muscles, and Drosophila has the advantage that it can be more easily genetically modified. To determine if Drosophila would be appropriate to investigate FE, we performed classic FE experiments on this muscle. Steady-state FE (FESS), following active lengthening, increased by 3, 7, and 12% of maximum isometric force, with increasing stretch amplitudes of 5, 10, and 20% of optimal fiber length (FLOPT), yet was similar for stretches across increasing stretch velocities of 4, 20, and 200% FLOPT/s. These FESS characteristics of the Drosophila jump muscle closely mimic those observed previously. Jump muscles also displayed typical transient FE characteristics. The transient force relaxation following active stretch was fit with a double exponential, yielding two phases of force relaxation: a fast initial relaxation of force, followed by a slower recovery toward steady state. Our analyses identified a negative correlation between the slow relaxation rate and FESS, indicating that there is likely an active component contributing to FE, in addition to a passive component. Herein, we have established the Drosophila jump muscle as a new and genetically powerful experimental model to investigate the underlying mechanism(s) of FE. PMID:26289752

  12. Epitaxial jumps

    NASA Astrophysics Data System (ADS)

    Stura, Enrico A.; Charbonnier, Jean-Baptiste; Taussig, Michael J.

    1999-01-01

    By a combination of seeding and changing the growth medium new crystal forms may be obtained. The procedure is called an epitaxial jump. The seeds used in the seeding are from crystals of the same or related protein. For example, seeding followed by an increase in precipitant concentration has given higher diffracting crystals of the complex between tissue factor, factor VIIa and the inhibitor 5L15. For both an anti-steroid antibody fragment and human placental alkaline phosphatase a polymorph was obtained by changing a low molecular weight polyethylene glycol (PEG) with one of a higher molecular weight. In the first case, in one direction and in the latter case, in the other direction. A change of conformation could also have contributed to this. A DsbA mutant illustrates how such changes, result in a different packing from that for the wild-type. Seeding from crystals of wild-type protein yields crystals which appear to be morphologically different from both the wild-type and mutant crystal forms.

  13. Mathematical modeling of molecular diffusion through mucus

    PubMed Central

    Cu, Yen; Saltzman, W. Mark

    2008-01-01

    The rate of molecular transport through the mucus gel can be an important determinant of efficacy for therapeutic agents delivered by oral, intranasal, intravaginal/rectal, and intraocular routes. Transport through mucus can be described by mathematical models based on principles of physical chemistry and known characteristics of the mucus gel, its constituents, and of the drug itself. In this paper, we review mathematical models of molecular diffusion in mucus, as well as the techniques commonly used to measure diffusion of solutes in the mucus gel, mucus gel mimics, and mucosal epithelia. PMID:19135488

  14. Analytical boron diffusivity model in silicon for thermal diffusion from boron silicate glass film

    NASA Astrophysics Data System (ADS)

    Kurachi, Ikuo; Yoshioka, Kentaro

    2015-09-01

    An analytical boron diffusivity model in silicon for thermal diffusion from a boron silicate glass (BSG) film has been proposed in terms of enhanced diffusion due to boron-silicon interstitial pair formation. The silicon interstitial generation is considered to be a result of the silicon kick-out mechanism by the diffused boron at the surface. The additional silicon interstitial generation in the bulk silicon is considered to be the dissociation of the diffused pairs. The former one causes the surface boron concentration dependent diffusion. The latter one causes the local boron concentration dependent diffusion. The calculated boron profiles based on the diffusivity model are confirmed to agree with the actual diffusion profiles measured by secondary ion mass spectroscopy (SIMS) for a wide range of the BSG boron concentration. This analytical diffusivity model is a helpful tool for p+ boron diffusion process optimization of n-type solar cell manufacturing.

  15. MODIS Solar Diffuser: Modelled and Actual Performance

    NASA Technical Reports Server (NTRS)

    Waluschka, Eugene; Xiong, Xiao-Xiong; Esposito, Joe; Wang, Xin-Dong; Krebs, Carolyn (Technical Monitor)

    2001-01-01

    The Moderate Resolution Imaging Spectroradiometer (MODIS) instrument's solar diffuser is used in its radiometric calibration for the reflective solar bands (VIS, NTR, and SWIR) ranging from 0.41 to 2.1 micron. The sun illuminates the solar diffuser either directly or through a attenuation screen. The attenuation screen consists of a regular array of pin holes. The attenuated illumination pattern on the solar diffuser is not uniform, but consists of a multitude of pin-hole images of the sun. This non-uniform illumination produces small, but noticeable radiometric effects. A description of the computer model used to simulate the effects of the attenuation screen is given and the predictions of the model are compared with actual, on-orbit, calibration measurements.

  16. Assessment of diffuse radiation models in Azores

    NASA Astrophysics Data System (ADS)

    Magarreiro, Clarisse; Brito, Miguel; Soares, Pedro; Azevedo, Eduardo

    2014-05-01

    Measured irradiance databases usually consist of global solar radiation data with limited spatial coverage. Hence, solar radiation models have been developed to estimate the diffuse fraction from the measured global irradiation. This information is critical for the assessment of the potential of solar energy technologies; for example, the decision to use photovoltaic systems with tracking system. The different solar radiation models for this purpose differ on the parameters used as input. The simplest, and most common, are models which use global radiation information only. More sophisticated models require meteorological parameters such as information from clouds, atmospheric turbidity, temperature or precipitable water content. Most of these models comprise correlations with the clearness index, kt (portion of horizontal extra-terrestrial radiation reaching the Earth's surface) to obtain the diffuse fraction kd (portion of diffuse component from global radiation). The applicability of these different models is related to the local atmospheric conditions and its climatic characteristics. The models are not of general validity and can only be applicable to locations where the albedo of the surrounding terrain and the atmospheric contamination by dust are not significantly different from those where the corresponding methods were developed. Thus, models of diffuse fraction exhibit a relevant degree of location dependence: e.g. models developed considering data acquired in Europe are mainly linked to Northern, Central or, more recently, Mediterranean areas. The Azores Archipelago, with its particular climate and cloud cover characteristics, different from mainland Europe, has not yet been considered for the development of testing of such models. The Azorean climate reveals large amounts of cloud cover in its annual cycle, with spatial and temporal variabilities more complex than the common Summer/Winter pattern. This study explores the applicability of different

  17. First principles calculations of alloying element diffusion coefficients in Ni using the five-frequency model

    NASA Astrophysics Data System (ADS)

    Wu, Qiong; Li, Shu-Suo; Ma, Yue; Gong, Sheng-Kai

    2012-10-01

    The diffusion coefficients of several alloying elements (Al, Mo, Co, Ta, Ru, W, Cr, Re) in Ni are directly calculated using the five-frequency model and the first principles density functional theory. The correlation factors provided by the five-frequency model are explicitly calculated. The calculated diffusion coefficients show their excellent agreement with the available experimental data. Both the diffusion pre-factor (D0) and the activation energy (Q) of impurity diffusion are obtained. The diffusion coefficients above 700 K are sorted in the following order: DAl > DCr > DCo > DTa > DMo > DRu > DW > DRe. It is found that there is a positive correlation between the atomic radius of the solute and the jump energy of Ni that results in the rotation of the solute-vacancy pair (E1). The value of E2-E1 (E2 is the solute diffusion energy) and the correlation factor each also show a positive correlation. The larger atoms in the same series have lower diffusion activation energies and faster diffusion coefficients.

  18. Modelling Diffusion of a Personalized Learning Framework

    ERIC Educational Resources Information Center

    Karmeshu; Raman, Raghu; Nedungadi, Prema

    2012-01-01

    A new modelling approach for diffusion of personalized learning as an educational process innovation in social group comprising adopter-teachers is proposed. An empirical analysis regarding the perception of 261 adopter-teachers from 18 schools in India about a particular personalized learning framework has been made. Based on this analysis,…

  19. Results from Modeling the Diffuse Ultraviolet Background

    NASA Astrophysics Data System (ADS)

    Murthy, Jayant

    2016-07-01

    I have used a Monte Carlo model for dust scattering in our Galaxy with multiple scattering to study the diffuse emission seen by the GALEX mission. I find that the emission at low and mid latitudes is fit well by scattering from dust grains with an albedo of 0.4. However, only about 30% of the diffuse radiation at high Galactic latitudes is due to dust scattering. There is an additional component of 500 - 600 ph cm^{-2} s^{-1} sr^{-1} Å^{-1} at all latitudes of an unknown origin.

  20. Generalized Drift-Diffusion Model In Semiconductors

    SciTech Connect

    Mesbah, S.; Bendib-Kalache, K.; Bendib, A.

    2008-09-23

    A new drift-diffusion model is proposed based on the computation of the stationary nonlocal current density. The semi classical Boltzmann equation is solved keeping all the anisotropies of the distribution function with the use of the continued fractions. The conductivity is calculated in the linear approximation and for arbitrary collision frequency with respect to Kv{sub t} where K{sup -1} is the characteristic length scale of the system and V{sub t} is the thermal velocity. The nonlocal conductivity can be used to close the generalized drift-diffusion equations valid for arbitrary collisionality.

  1. Anomalous Diffusion in a Trading Model

    NASA Astrophysics Data System (ADS)

    Khidzir, Sidiq Mohamad; Wan Abdullah, Wan Ahmad Tajuddin

    2009-07-01

    The result of the trading model by Chakrabarti et al. [1] is the wealth distribution with a mixed exponential and power law distribution. Based on the motivation of studying the dynamics behind the flow of money similar to work done by Brockmann [2, 3] we track the flow of money in this trading model to observe anomalous diffusion in the form of long waiting times and Levy Flights.

  2. Measuring Psychometric Functions with the Diffusion Model

    PubMed Central

    Ratcliff, Roger

    2014-01-01

    The diffusion decision model (Ratcliff, 1978) was used to examine discrimination for a range of perceptual tasks: numerosity discrimination, number discrimination, brightness discrimination, motion discrimination, speed discrimination, and length discrimination. The model produces a measure of the quality of the information that drives decision processes, a measure termed “drift rate” in the model. As drift rate varies across experimental conditions that differ in difficulty, a psychometric function that plots drift rate against difficulty can be constructed. Psychometric functions for the tasks in this article usually plot accuracy against difficulty, but for some levels of difficulty, accuracy can be at ceiling. The diffusion model extends the range of difficulty that can be evaluated because drift rates depend on response times (RTs) as well as accuracy and when RTs decrease across conditions that are all at ceiling in accuracy, then drift rates will distinguish among the conditions. Signal detection theory assumes that the variable driving performance is the z-transform of the accuracy value and somewhat surprisingly, this closely matches drift rate extracted from the diffusion model when accuracy is not at ceiling, but not sometimes when accuracy is high. Even though the functions are similar in the middle of the range, the interpretations of the variability in the models (e.g., perceptual variability, decision process variability) are incompatible. PMID:24446719

  3. Modeling Demic and Cultural Diffusion: An Introduction.

    PubMed

    Fort, Joaquim; Crema, Enrico R; Madella, Marco

    2015-07-01

    Identifying the processes by which human cultures spread across different populations is one of the most topical objectives shared among different fields of study. Seminal works have analyzed a variety of data and attempted to determine whether empirically observed patterns are the result of demic and/or cultural diffusion. This special issue collects articles exploring several themes (from modes of cultural transmission to drivers of dispersal mechanisms) and contexts (from the Neolithic in Europe to the spread of computer programming languages), which offer new insights that will augment the theoretical and empirical basis for the study of demic and cultural diffusion. In this introduction we outline the state of art in the modeling of these processes, briefly discuss the pros and cons of two of the most commonly used frameworks (equation-based models and agent-based models), and summarize the significance of each article in this special issue. PMID:26932566

  4. Solvable random-walk model with memory and its relations with Markovian models of anomalous diffusion

    NASA Astrophysics Data System (ADS)

    Boyer, D.; Romo-Cruz, J. C. R.

    2014-10-01

    Motivated by studies on the recurrent properties of animal and human mobility, we introduce a path-dependent random-walk model with long-range memory for which not only the mean-square displacement (MSD) but also the propagator can be obtained exactly in the asymptotic limit. The model consists of a random walker on a lattice, which, at a constant rate, stochastically relocates at a site occupied at some earlier time. This time in the past is chosen randomly according to a memory kernel, whose temporal decay can be varied via an exponent parameter. In the weakly non-Markovian regime, memory reduces the diffusion coefficient from the bare value. When the mean backward jump in time diverges, the diffusion coefficient vanishes and a transition to an anomalous subdiffusive regime occurs. Paradoxically, at the transition, the process is an anticorrelated Lévy flight. Although in the subdiffusive regime the model exhibits some features of the continuous time random walk with infinite mean waiting time, it belongs to another universality class. If memory is very long-ranged, a second transition takes place to a regime characterized by a logarithmic growth of the MSD with time. In this case the process is asymptotically Gaussian and effectively described as a scaled Brownian motion with a diffusion coefficient decaying as 1 /t .

  5. A Stochastic Cellular Automaton Model of Non-linear Diffusion and Diffusion with Reaction

    NASA Astrophysics Data System (ADS)

    Brieger, Leesa M.; Bonomi, Ernesto

    1991-06-01

    This article presents a stochastic cellular automaton model of diffusion and diffusion with reaction. The master equations for the model are examined, and we assess the difference between the implementation in which a single particle at a time moves (asynchronous dynamics) and one implementation in which all particles move simultaneously (synchronous dynamics). Biasing locally each particle's random walk, we alter the diffusion coefficients of the system. By appropriately choosing the biasing function, we can impose a desired non-linear diffusive behaviour in the model. We present an application of this model, adapted to include two diffusing species, two static species, and a chemical reaction in a prototypical simulation of carbonation in concrete.

  6. The circular internal hydraulic jump

    NASA Astrophysics Data System (ADS)

    Thorpe, S. A.; Kavcic, I.

    Circular hydraulic jumps are familiar in single layers. Here we report the discovery of similar jumps in two-layer flows. A thin jet of fluid impinging vertically onto a rigid horizontal plane surface submerged in a deep layer of less-dense miscible fluid spreads radially, and a near-circular internal jump forms within a few centimetres from the point of impact with the plane surface. A jump is similarly formed as a jet of relatively less-dense fluid rises to the surface of a deep layer of fluid, but it appears less stable or permanent in form. Several experiments are made to examine the case of a downward jet onto a horizontal plate, the base of a square or circular container. The inlet Reynolds numbers, Re, of the jet range from 112 to 1790. Initially jumps have an undular, laminar form with typically 2-4 stationary waves on the interface between the dense and less-dense layers but, as the depth of the dense layer beyond the jump increases, the transitions become more abrupt and turbulent, resulting in mixing between the two layers. During the transition to a turbulent regime, single and sometimes moving multiple cusps are observed around the periphery of jumps. A semi-empirical model is devised that relates the parameters of the laboratory experiment, i.e. flow rate, inlet nozzle radius, kinematic viscosity and reduced gravity, to the layer depth beyond the jump and the radius at which an undular jump occurs. The experiments imply that surface tension is not an essential ingredient in the formation of circular hydraulic jumps and demonstrate that stationary jumps can exist in stratified shear flows which can be represented as two discrete layers. No stationary circular undular jumps are found, however, in the case of a downward jet of dense fluid when the overlying, less-dense, fluid is stratified, but a stationary turbulent transition is observed. This has implications for the existence of stationary jumps in continuously stratified geophysical flows: results

  7. A Diffuse Interface Model with Immiscibility Preservation

    PubMed Central

    Tiwari, Arpit; Freund, Jonathan B.; Pantano, Carlos

    2013-01-01

    A new, simple, and computationally efficient interface capturing scheme based on a diffuse interface approach is presented for simulation of compressible multiphase flows. Multi-fluid interfaces are represented using field variables (interface functions) with associated transport equations that are augmented, with respect to an established formulation, to enforce a selected interface thickness. The resulting interface region can be set just thick enough to be resolved by the underlying mesh and numerical method, yet thin enough to provide an efficient model for dynamics of well-resolved scales. A key advance in the present method is that the interface regularization is asymptotically compatible with the thermodynamic mixture laws of the mixture model upon which it is constructed. It incorporates first-order pressure and velocity non-equilibrium effects while preserving interface conditions for equilibrium flows, even within the thin diffused mixture region. We first quantify the improved convergence of this formulation in some widely used one-dimensional configurations, then show that it enables fundamentally better simulations of bubble dynamics. Demonstrations include both a spherical bubble collapse, which is shown to maintain excellent symmetry despite the Cartesian mesh, and a jetting bubble collapse adjacent a wall. Comparisons show that without the new formulation the jet is suppressed by numerical diffusion leading to qualitatively incorrect results. PMID:24058207

  8. A diffusion model for tungsten powder carburization

    NASA Astrophysics Data System (ADS)

    McCarty, Lewis V.; Donelson, Richard; Hehemann, Robert f.

    1991-01-01

    A mathematical model describes the carburization kinetics of tungsten powders mixed with carbon and heated in hydrogen. It is based on diffusion of carbon through a shell of WC growing into particles which are modeled as spheres. The activation energy is 58 kcal/mole in the temperature range 1056 to 1833 °C. Hydrogen gas is important to transport carbon as methane or acetylene, but increased hydrogen pressure increases the rate of carburization so little that an adsorbed species such as CH probably controls the carbon concentration at the particle surface.

  9. Radiosity diffusion model in 3D

    NASA Astrophysics Data System (ADS)

    Riley, Jason D.; Arridge, Simon R.; Chrysanthou, Yiorgos; Dehghani, Hamid; Hillman, Elizabeth M. C.; Schweiger, Martin

    2001-11-01

    We present the Radiosity-Diffusion model in three dimensions(3D), as an extension to previous work in 2D. It is a method for handling non-scattering spaces in optically participating media. We present the extension of the model to 3D including an extension to the model to cope with increased complexity of the 3D domain. We show that in 3D more careful consideration must be given to the issues of meshing and visibility to model the transport of light within reasonable computational bounds. We demonstrate the model to be comparable to Monte-Carlo simulations for selected geometries, and show preliminary results of comparisons to measured time-resolved data acquired on resin phantoms.

  10. Distributed Energy Resources Market Diffusion Model

    SciTech Connect

    Maribu, Karl Magnus; Firestone, Ryan; Marnay, Chris; Siddiqui,Afzal S.

    2006-06-16

    Distributed generation (DG) technologies, such as gas-fired reciprocating engines and microturbines, have been found to be economically beneficial in meeting commercial-sector electrical, heating, and cooling loads. Even though the electric-only efficiency of DG is lower than that offered by traditional central stations, combined heat and power (CHP) applications using recovered heat can make the overall system energy efficiency of distributed energy resources (DER) greater. From a policy perspective, however, it would be useful to have good estimates of penetration rates of DER under various economic and regulatory scenarios. In order to examine the extent to which DER systems may be adopted at a national level, we model the diffusion of DER in the US commercial building sector under different technical research and technology outreach scenarios. In this context, technology market diffusion is assumed to depend on the system's economic attractiveness and the developer's knowledge about the technology. The latter can be spread both by word-of-mouth and by public outreach programs. To account for regional differences in energy markets and climates, as well as the economic potential for different building types, optimal DER systems are found for several building types and regions. Technology diffusion is then predicted via two scenarios: a baseline scenario and a program scenario, in which more research improves DER performance and stronger technology outreach programs increase DER knowledge. The results depict a large and diverse market where both optimal installed capacity and profitability vary significantly across regions and building types. According to the technology diffusion model, the West region will take the lead in DER installations mainly due to high electricity prices, followed by a later adoption in the Northeast and Midwest regions. Since the DER market is in an early stage, both technology research and outreach programs have the potential to increase

  11. Diffusion through thin membranes: Modeling across scales

    NASA Astrophysics Data System (ADS)

    Aho, Vesa; Mattila, Keijo; Kühn, Thomas; Kekäläinen, Pekka; Pulkkinen, Otto; Minussi, Roberta Brondani; Vihinen-Ranta, Maija; Timonen, Jussi

    2016-04-01

    From macroscopic to microscopic scales it is demonstrated that diffusion through membranes can be modeled using specific boundary conditions across them. The membranes are here considered thin in comparison to the overall size of the system. In a macroscopic scale the membrane is introduced as a transmission boundary condition, which enables an effective modeling of systems that involve multiple scales. In a mesoscopic scale, a numerical lattice-Boltzmann scheme with a partial-bounceback condition at the membrane is proposed and analyzed. It is shown that this mesoscopic approach provides a consistent approximation of the transmission boundary condition. Furthermore, analysis of the mesoscopic scheme gives rise to an expression for the permeability of a thin membrane as a function of a mesoscopic transmission parameter. In a microscopic model, the mean waiting time for a passage of a particle through the membrane is in accordance with this permeability. Numerical results computed with the mesoscopic scheme are then compared successfully with analytical solutions derived in a macroscopic scale, and the membrane model introduced here is used to simulate diffusive transport between the cell nucleus and cytoplasm through the nuclear envelope in a realistic cell model based on fluorescence microscopy data. By comparing the simulated fluorophore transport to the experimental one, we determine the permeability of the nuclear envelope of HeLa cells to enhanced yellow fluorescent protein.

  12. Jumping hoops on water

    NASA Astrophysics Data System (ADS)

    Yang, Eunjin; Kim, Ho-Young

    2015-11-01

    Small aquatic arthropods, such as water striders and fishing spiders, are able to jump off water to a height several times their body length. Inspired by the unique biological motility on water, we study a simple model using a flexible hoop to provide fundamental understanding and a mimicking principle of small jumpers on water. Behavior of a hoop on water, which is coated with superhydrophobic particles and initially bent into an ellipse from an equilibrium circular shape, is visualized with a high speed camera upon launching it into air by releasing its initial elastic strain energy. We observe that jumping of our hoops is dominated by the dynamic pressure of water rather than surface tension, and thus it corresponds to the dynamic condition experienced by fishing spiders. We calculate the reaction forces provided by water adopting the unsteady Bernoulli equation as well as the momentum loss into liquid inertia and viscous friction. Our analysis allows us to predict the jumping efficiency of the hoop on water in comparison to that on ground, and to discuss the evolutionary pressure rendering fishing spiders select such dynamic behavior.

  13. Distributed Wind Diffusion Model Overview (Presentation)

    SciTech Connect

    Preus, R.; Drury, E.; Sigrin, B.; Gleason, M.

    2014-07-01

    Distributed wind market demand is driven by current and future wind price and performance, along with several non-price market factors like financing terms, retail electricity rates and rate structures, future wind incentives, and others. We developed a new distributed wind technology diffusion model for the contiguous United States that combines hourly wind speed data at 200m resolution with high resolution electricity load data for various consumer segments (e.g., residential, commercial, industrial), electricity rates and rate structures for utility service territories, incentive data, and high resolution tree cover. The model first calculates the economics of distributed wind at high spatial resolution for each market segment, and then uses a Bass diffusion framework to estimate the evolution of market demand over time. The model provides a fundamental new tool for characterizing how distributed wind market potential could be impacted by a range of future conditions, such as electricity price escalations, improvements in wind generator performance and installed cost, and new financing structures. This paper describes model methodology and presents sample results for distributed wind market potential in the contiguous U.S. through 2050.

  14. Diffuse Interface Model for Microstructure Evolution

    NASA Astrophysics Data System (ADS)

    Nestler, Britta

    A phase-field model for a general class of multi-phase metallic alloys is proposed which describes both, multi-phase solidification phenomena as well as polycrystalline grain structures. The model serves as a computational method to simulate the motion and kinetics of multiple phase boundaries and enables the visualization of the diffusion processes and of the phase transitions in multi-phase systems. Numerical simulations are presented which illustrate the capability of the phase-field model to recover a variety of complex experimental growth structures. In particular, the phase-field model can be used to simulate microstructure evolutions in eutectic, peritectic and monotectic alloys. In addition, polycrystalline grain structures with effects such as wetting, grain growth, symmetry properties of adjacent triple junctions in thin film samples and stability criteria at multiple junctions are described by phase-field simulations.

  15. Multilayer model of photon diffusion in skin

    SciTech Connect

    Schmitt, J.M.; Zhou, G.X.; Walker, E.C.; Wall, R.T. )

    1990-11-01

    A diffusion model describing the propagation of photon flux in the epidermal, dermal, and subcutaneous tissue layers of the skin is presented. Assuming that the skin is illuminated by a collimated, finite-aperture source, we develop expressions relating photon flux density within the skin and intensities re-emitted from the skin surface to the optical properties of the individual layers. Model simulations show that the rate at which re-emitted intensities diminish with radial distance away from the source can provide information about absorption and scattering in underlying tissues. Re-emitted intensities measured from homogeneous and two-layer tissue phantoms compare favorably with model predictions. We demonstrate potential applications of the model by estimating the absorption (sigma a) and transport-corrected scattering (sigma's) coefficients of dermis and subcutis from intensities measured from intact skin and by predicting the magnitude of the optical-density variations measured by a photoplethysmograph.

  16. A diffusion-diffusion model for percutaneous drug absorption.

    PubMed

    Kubota, K; Ishizaki, T

    1986-08-01

    Several theories describing percutaneous drug absorption have been proposed, incorporating the mathematical solutions of differential equations describing percutaneous drug absorption processes where the vehicle and skin are regarded as simple diffusion membranes. By a solution derived from Laplace transforms, the mean residence time MRT and the variance of the residence time VRT in the vehicle are expressed as simple elementary functions of the following five pharmacokinetic parameters characterizing the percutaneous drug absorption: kd, which is defined as the normalized diffusion coefficient of the skin, kc, which is defined as the normalized skin-capillary boundary clearance, the apparent length of diffusion of the skin 1d, the effective length of the vehicle lv, and the diffusion coefficient of the vehicle Dv. All five parameters can be obtained by the methods proposed here. Results of numerical computation indicate that: concentration-distance curves in the vehicle and skin approximate two curves which are simply expressed using trigonometric functions when sufficient time elapses after an ointment application; the most suitable condition for the assumption that the concentration of a drug in the uppermost epidermis can be considered unchanged is the case where the partition coefficient between vehicle and skin is small, and the constancy of drug concentration is even more valid when the effective length of the vehicle is large; and the amount of a drug in the vehicle or skin and the flow rate of the drug from vehicle into skin or from skin into blood becomes linear on a semilogarithmic scale, and the slopes of those lines are small when Dv is small, when the partition coefficient between vehicle and skin is small, when lv is large, or when kc is small. A simple simulation method is also proposed using a biexponential for the concentration-time curve for the skin near the skin-capillary boundary, that is, the flow rate-time curve for drug passing from skin

  17. Distinctive features of the biological catch bond in the jump-ramp force regime predicted by the two-pathway model.

    PubMed

    Pereverzev, Yuriy V; Prezhdo, Oleg V; Thomas, Wendy E; Sokurenko, Evgeni V

    2005-07-01

    The receptor-ligand unbinding in the biological catch bond is analyzed within a simple model that comprises a single bound state and two unbinding pathways. This model is investigated in detail for the jump-ramp force regime, where the pulling force quickly jumps to a finite value and then is ramped linearly with time. Two qualitative criteria are identified that distinguish the catch bond from the slip bond. First, the rupture force probability density of the catch-bond exhibits a maximum-minimum pair, which develops at finite forces. In contrast, the slip bond produces a maximum that first appears at zero force. Second, the catch bond can be identified over a wide range of ramp rates by high rupture probabilities at low forces relative to the probability at the maximum, in contrast to the slip bond, where the probability at the maximum always corresponds to the most likely rupture force. Both distinctive features of the catch bond are masked by large jump forces, indicating that the catch bond is best identified in experiments with moderate loading rates and small jump forces. The catch-bond lifetime in the constant force regime is related to the probability density in the jump-ramp regime, allowing one to determine the bond lifetime for a constant force by measuring the initial probability density in the jump-ramp experiments with different jump forces and a fixed ramp rate. The key analytic results are illustrated with the P -selectin/P-selectin glucoprotein ligand-1 bond. PMID:16089930

  18. Databases for Computational Thermodynamics and Diffusion Modeling

    NASA Astrophysics Data System (ADS)

    Kattner, U. R.; Boettinger, W. J.; Morral, J. E.

    2002-11-01

    Databases for computational thermodynamics and diffusion modeling can be applied to predict phase diagrams for alloy design and alloy behavior during processing and service. Databases that are currently available to scientists, engineers and students need to be expanded and improved. The approach of the workshop was to first identify the database and information delivery tool needs of industry and education. The workshop format was a series of invited talks given to the group as a whole followed by general discussions of needs and benefits to provide a roadmap of future activities.

  19. Genomics Analogy Model for Educators (GAME): From Jumping Genes to Alternative Splicing

    ERIC Educational Resources Information Center

    Corn, Joanie; Pittendrigh, Barry R.; Orvis, Kathryn S.

    2004-01-01

    Studies have shown that there is usually a lack of understanding concerning the fields of genetics and genomics among high school students (Lewis and Wood-Robinson, 2000). A recent article (Kirkpatrick et al, 2002) introduced the GAME (Genomics Analogy Model for Educators) model and two of its components: (1) explaining sequencing technology with…

  20. Stochastic modeling of Lake Van water level time series with jumps and multiple trends

    NASA Astrophysics Data System (ADS)

    Aksoy, H.; Unal, N. E.; Eris, E.; Yuce, M. I.

    2013-06-01

    In the 1990s, water level in the closed-basin Lake Van located in the Eastern Anatolia, Turkey, has risen up about 2 m. Analysis of the hydrometeorological data shows that change in the water level is related to the water budget of the lake. In this study, stochastic models are proposed for simulating monthly water level data. Two models considering mono- and multiple-trend time series are developed. The models are derived after removal of trend and periodicity in the dataset. Trend observed in the lake water level time series is fitted by mono- and multiple-trend lines. In the so-called mono-trend model, the time series is treated as a whole under the hypothesis that the lake water level has an increasing trend. In the second model (so-called multiple-trend), the time series is divided into a number of segments to each a linear trend can be fitted separately. Application on the lake water level data shows that four segments, each fitted with a trend line, are meaningful. Both the mono- and multiple-trend models are used for simulation of synthetic lake water level time series under the hypothesis that the observed mono- and multiple-trend structure of the lake water level persist during the simulation period. The multiple-trend model is found better for planning the future infrastructural projects in surrounding areas of the lake as it generates higher maxima for the simulated lake water level.

  1. Stochastic modeling of Lake Van water level time series with jumps and multiple trends

    NASA Astrophysics Data System (ADS)

    Aksoy, H.; Unal, N. E.; Eris, E.; Yuce, M. I.

    2013-02-01

    In 1990s, water level in the closed-basin Lake Van located in the Eastern Anatolia, Turkey has risen up about 2 m. Analysis of the hydrometeorological shows that change in the water level is related to the water budget of the lake. In this study, a stochastic model is generated using the measured monthly water level data of the lake. The model is derived after removal of trend and periodicity in the data set. Trend observed in the lake water level time series is fitted by mono- and multiple-trend lines. For the multiple-trend, the time series is first divided into homogeneous segments by means of SEGMENTER, segmentation software. Four segments are found meaningful practically each fitted with a trend line. Two models considering mono- and multiple-trend time series are developed. The multiple-trend model is found better for planning future development in surrounding areas of the lake.

  2. Analysis of stochastic two-prey one-predator model with Lévy jumps

    NASA Astrophysics Data System (ADS)

    Liu, Meng; Bai, Chuanzhi; Deng, Meiling; Du, Bo

    2016-03-01

    Taking white noises and Lévy noises into account, a two-prey one-predator model in random environments is proposed and investigated. Under some simple assumptions, the critical value between persistence in the mean and extinction for each population is obtained. Then sufficient conditions for stability in distribution of the model are established. Finally, some numerical examples are introduced to validate the analytical findings.

  3. Continental rift jumps

    NASA Astrophysics Data System (ADS)

    Wood, Charles A.

    1983-05-01

    Continental rift jumps, analogous to jumps of oceanic spreading ridges, are here proposed to be common. Good examples exist in Iceland and Afar (both transitional from ridge to rift jumps), West Africa (Benue Trough and Cameroon Volcanic Line), and Kenya. Indeed, the Kenya rift appears to have jumped c. 100 km eastward c. 10 m.y. ago and is currently jumping further to the east. Possible jumps exist in the Baikal rift, the Limagne-Bresse rift pair, and parallel to ancient continental margins (e.g., the Triassic basins of the eastern U.S. to Baltimore Canyon and Georges Bank). Continental rifts jump distances that are approximately equal to local lithosphere thickness, suggesting that jumped rifts are controlled by lithosphere fracturing, but there appears to be no reason for the fracturing except migration of hot spots.

  4. Diffusion model for lightning radiative transfer

    NASA Technical Reports Server (NTRS)

    Koshak, William J.; Solakiewicz, Richard J.; Phanord, Dieudonne D.; Blakeslee, Richard J.

    1994-01-01

    A one-speed Boltzmann transport theory, with diffusion approximations, is applied to study the radiative transfer properties of lightning in optically thick thunderclouds. Near-infrared (lambda = 0.7774 micrometers) photons associated with a prominent oxygen emission triplet in the lightning spectrum are considered. Transient and spatially complex lightning radiation sources are placed inside a rectangular parallelepiped thundercloud geometry and the effects of multiple scattering are studied. The cloud is assumed to be composed of a homogeneous collection of identical spherical water droplets, each droplet a nearly conservative, anisotropic scatterer. Conceptually, we treat the thundercloud like a nuclear reactor, with photons replaced by neutrons, and utilize standard one-speed neutron diffusion techniques common in nuclear reactor analyses. Valid analytic results for the intensity distribution (expanded in spherical harmonics) are obtained for regions sufficiently far from sources. Model estimates of the arrival-time delay and pulse width broadening of lightning signals radiated from within the cloud are determined and the results are in good agreement with both experimental data and previous Monte Carlo estimates. Additional model studies of this kind will be used to study the general information content of cloud top lightning radiation signatures.

  5. Study of FK Comae Berenices. VI. Spot motions, phase jumps and a flip-flop from time-series modelling

    NASA Astrophysics Data System (ADS)

    Oláh, K.; Korhonen, H.; Kővári, Zs.; Forgács-Dajka, E.; Strassmeier, K. G.

    2006-06-01

    Aims.Time-series spot modelling was used to follow the longitude changes of active regions responsible for the light variability of FK Com between 1987-2004. Methods: .The photometric data are analysed in the time-series mode of a spot modelling code. A scenario of one polar and two low-latitude active regions (hereafter spots, for simplicity) depicts the light variations very well. The role of the polar spot remains unclear because photometry in general does not provide direct latitudinal surface resolution, however, Doppler imaging results of FK Com also show very high latitude or even polar spots besides the low-latitude ones. We also used a light-curve inversion method to confirm some of the results. Results: .The two low-latitude spots slowly migrate around 90° and 270° longitudes with quasiperiods of 5.8 and 5.2 years. The spots prefer to stay alternately on one or the other, but on the same hemisphere of the star, with a separation of typically 90-140°. We monitored a flip-flop in the light curve of FK Comae in 1999. The two low-latitude spots, being ≈140-180° from each other during the season, gradually decreased until they both practically vanished. Shortly thereafter, two new spots appeared and started to grow. One of the new spots was near the location of the old one, whereas the other turned up 90° shifted in longitude; consequently, the activity as a whole was shifted to the other hemisphere of the star. We followed a phase jump in 1997, when the two low-latitude spots got closer in longitude and finally merged, or else one of them vanished. A new spot appeared soon, shifted by 100° in longitude, but the activity remained on the same hemisphere. Conclusions: .The difference between flip-flops and phase jumps is demonstrated. The derived longitude changes of activity centres may allow us to better constrain the theoretical modelling on the time-behaviour of stellar magnetic activity.

  6. Accounting for Diffusion in Agent Based Models of Reaction-Diffusion Systems with Application to Cytoskeletal Diffusion

    PubMed Central

    Azimi, Mohammad; Jamali, Yousef; Mofrad, Mohammad R. K.

    2011-01-01

    Diffusion plays a key role in many biochemical reaction systems seen in nature. Scenarios where diffusion behavior is critical can be seen in the cell and subcellular compartments where molecular crowding limits the interaction between particles. We investigate the application of a computational method for modeling the diffusion of molecules and macromolecules in three-dimensional solutions using agent based modeling. This method allows for realistic modeling of a system of particles with different properties such as size, diffusion coefficients, and affinity as well as the environment properties such as viscosity and geometry. Simulations using these movement probabilities yield behavior that mimics natural diffusion. Using this modeling framework, we simulate the effects of molecular crowding on effective diffusion and have validated the results of our model using Langevin dynamics simulations and note that they are in good agreement with previous experimental data. Furthermore, we investigate an extension of this framework where single discrete cells can contain multiple particles of varying size in an effort to highlight errors that can arise from discretization that lead to the unnatural behavior of particles undergoing diffusion. Subsequently, we explore various algorithms that differ in how they handle the movement of multiple particles per cell and suggest an algorithm that properly accommodates multiple particles of various sizes per cell that can replicate the natural behavior of these particles diffusing. Finally, we use the present modeling framework to investigate the effect of structural geometry on the directionality of diffusion in the cell cytoskeleton with the observation that parallel orientation in the structural geometry of actin filaments of filopodia and the branched structure of lamellipodia can give directionality to diffusion at the filopodia-lamellipodia interface. PMID:21966493

  7. Extended source model for diffusive coupling.

    PubMed

    González-Ochoa, Héctor O; Flores-Moreno, Roberto; Reyes, Luz M; Femat, Ricardo

    2016-01-01

    Motivated by the prevailing approach to diffusion coupling phenomena which considers point-like diffusing sources, we derived an analogous expression for the concentration rate of change of diffusively coupled extended containers. The proposed equation, together with expressions based on solutions to the diffusion equation, is intended to be applied to the numerical solution of systems exclusively composed of ordinary differential equations, however is able to account for effects due the finite size of the coupled sources. PMID:26802012

  8. Modeling of diffusion controlled drug delivery.

    PubMed

    Siepmann, Juergen; Siepmann, Florence

    2012-07-20

    Mathematical modeling of drug release can be very helpful to speed up product development and to better understand the mechanisms controlling drug release from advanced delivery systems. Ideally, in silico simulations can quantitatively predict the impact of formulation and processing parameters on the resulting drug release kinetics. The aim of this article is to give an overview on the current state of the art of modeling drug release from delivery systems, which are predominantly controlled by diffusional mass transport. The inner structure of the device, the ratio "initial drug concentration:drug solubility" as well as the device geometry determine which type of mathematical equation must be applied. A straightforward "road map" is given, explaining how to identify the appropriate equation for a particular type of drug delivery system. The respective equations for a broad range of devices are indicated, including reservoir and matrix systems, exhibiting or not an initial excess of drug and the geometry of slabs, spheres and cylinders. The assumptions the models are based on as well as their limitations are pointed out. Practical examples illustrate the usefulness of mathematical modeling of diffusion controlled drug delivery. Due to the advances in information technology the importance of in silico optimization of advanced drug delivery systems can be expected to significantly increase in the future. PMID:22019555

  9. Extending the diffusion approximation to the boundary using an integrated diffusion model

    NASA Astrophysics Data System (ADS)

    Chen, Chen; Du, Zhidong; Pan, Liang

    2015-06-01

    The widely used diffusion approximation is inaccurate to describe the transport behaviors near surfaces and interfaces. To solve such stochastic processes, an integro-differential equation, such as the Boltzmann transport equation (BTE), is typically required. In this work, we show that it is possible to keep the simplicity of the diffusion approximation by introducing a nonlocal source term and a spatially varying diffusion coefficient. We apply the proposed integrated diffusion model (IDM) to a benchmark problem of heat conduction across a thin film to demonstrate its feasibility. We also validate the model when boundary reflections and uniform internal heat generation are present.

  10. Atomic jump frequencies in intermetallic compounds studied using perturbed angular correlation of gamma rays

    NASA Astrophysics Data System (ADS)

    Newhouse, Randal Leslie

    Atomic jump frequencies were determined in a variety of intermetallic compounds through analysis of nuclear relaxation of spectra measured using the nuclear hyperfine technique, perturbed angular correlation (PAC) of gamma rays. Observed at higher temperatures, this relaxation is attributed to fluctuations in the orientation or magnitude of electric field gradients (EFG) at nuclei of 111In/Cd probe atoms as the atoms make diffusive jumps. Jump frequencies were obtained by fitting dynamically relaxed PAC spectra using either an empirical relaxation function or using ab initio relaxation models created using the program PolyPacFit. Jump frequency activation enthalpies were determined from measurements over a range of temperatures. Diffusion was studied in the following systems: 1) Pseudo-binary alloys having the L12 crystal structure such as In3(La1-xPrx). The goal was to see how jump frequencies were affected by random disorder. 2) The family of layered phases, LanCoIn3n+2 ( n=0,1,2,3…∞). The goal was to see how jump frequencies varied with the spacing of Co layers, which were found to block diffusion. 3) Phases having the FeGa3 structure. The goal was to analyze dynamical relaxation for probe atoms having multiple inequivalent jump vectors. 4) Phases having the tetragonal Al4Ba structure. The goal was to search for effects in the PAC spectra caused by fluctuations in magnitudes of EFGs without fluctuations in orientations. Ab initio relaxation models were developed to simulate and fit dynamical relaxation for PAC spectra of FeGa3, and several phases with the Al4Ba structure in order to determine underlying microscopic jump frequencies. In the course of this work, site preferences also were observed for 111In/Cd probe atoms in several FeGa 3 and Al4Ba phases.

  11. Pulmonary hemorrhage resulting from bungee jumping.

    PubMed

    Manos, Daria; Hamer, Okka; Müller, Nestor L

    2007-11-01

    Pulmonary hemorrhage is a relatively common complication of blunt chest trauma. Occasionally, it may result from pulmonary barotrauma after scuba diving or from sports activities not associated with barotrauma such as long breath-hold diving. We report a case of symmetric diffuse upper lobe hemorrhage resulting from a bungee jump in a previously healthy man. Bungee jumping is an increasingly popular sport with relatively few reported injuries. To our knowledge pulmonary hemorrhage in this setting has not yet been described. PMID:18043394

  12. Modeling of hydrogen-air diffusion flame

    NASA Technical Reports Server (NTRS)

    Isaac, K. M.

    1988-01-01

    Work performed during the first six months of the project duration for NASA Grant (NAG-1-861) is reported. An analytical and computational study of opposed jet diffusion flame for the purpose of understanding the effects of contaminants in the reactants and thermal diffusion of light species on extinction and reignition of diffusion flames is in progress. The methodologies attempted so far are described.

  13. Performance analysis of jump-gliding locomotion for miniature robotics.

    PubMed

    Vidyasagar, A; Zufferey, Jean-Christohphe; Floreano, Dario; Kovač, M

    2015-04-01

    Recent work suggests that jumping locomotion in combination with a gliding phase can be used as an effective mobility principle in robotics. Compared to pure jumping without a gliding phase, the potential benefits of hybrid jump-gliding locomotion includes the ability to extend the distance travelled and reduce the potentially damaging impact forces upon landing. This publication evaluates the performance of jump-gliding locomotion and provides models for the analysis of the relevant dynamics of flight. It also defines a jump-gliding envelope that encompasses the range that can be achieved with jump-gliding robots and that can be used to evaluate the performance and improvement potential of jump-gliding robots. We present first a planar dynamic model and then a simplified closed form model, which allow for quantification of the distance travelled and the impact energy on landing. In order to validate the prediction of these models, we validate the model with experiments using a novel jump-gliding robot, named the 'EPFL jump-glider'. It has a mass of 16.5 g and is able to perform jumps from elevated positions, perform steered gliding flight, land safely and traverse on the ground by repetitive jumping. The experiments indicate that the developed jump-gliding model fits very well with the measured flight data using the EPFL jump-glider, confirming the benefits of jump-gliding locomotion to mobile robotics. The jump-glide envelope considerations indicate that the EPFL jump-glider, when traversing from a 2 m height, reaches 74.3% of optimal jump-gliding distance compared to pure jumping without a gliding phase which only reaches 33.4% of the optimal jump-gliding distance. Methods of further improving flight performance based on the models and inspiration from biological systems are presented providing mechanical design pathways to future jump-gliding robot designs. PMID:25811417

  14. Some Problems in Using Diffusion Models for New Products

    ERIC Educational Resources Information Center

    Bernhardt, Irwin; Mackenzie, Kenneth D.

    1972-01-01

    Analyzes some of the problems involved in using diffusion models to formulate marketing strategies for introducing new products. Six models, which remove some of the theoretical and methodological restrictions inherent in current models of the adoption and diffusion process, are presented. (Author/JH)

  15. A cockroach that jumps.

    PubMed

    Picker, Mike; Colville, Jonathan F; Burrows, Malcolm

    2012-06-23

    We report on a newly discovered cockroach (Saltoblattella montistabularis) from South Africa, which jumps and therefore differs from all other extant cockroaches that have a scuttling locomotion. In its natural shrubland habitat, jumping and hopping accounted for 71 per cent of locomotory activity. Jumps are powered by rapid and synchronous extension of the hind legs that are twice the length of the other legs and make up 10 per cent of the body weight. In high-speed images of the best jumps the body was accelerated in 10 ms to a take-off velocity of 2.1 m s(-1) so that the cockroach experienced the equivalent of 23 times gravity while leaping a forward distance of 48 times its body length. Such jumps required 38 µJ of energy, a power output of 3.4 mW and exerted a ground reaction force through both hind legs of 4 mN. The large hind legs have grooved femora into which the tibiae engage fully in advance of a jump, and have resilin, an elastic protein, at the femoro-tibial joint. The extensor tibiae muscles contracted for 224 ms before the hind legs moved, indicating that energy must be stored and then released suddenly in a catapult action to propel a jump. Overall, the jumping mechanisms and anatomical features show remarkable convergence with those of grasshoppers with whom they share their habitat and which they rival in jumping performance. PMID:22158737

  16. Development and Application of a Habitat Suitability Ranking Model for the New Mexico Meadow Jumping Mouse (Zapus hudsonius luteus)

    SciTech Connect

    James Biggs; Mary Mullen; Kathryn Bennett

    1999-11-01

    The New Mexico meadow jumping mouse (Zapus hudsonius luteus) is currently listed as a state threatened species in New Mexico and has been identified as potentially occurring within the Los Alamos National Laboratory (LANL) boundary. We describe the development of a model to identify and rank habitat at LANL that may be suitable for occupation by this species. The model calculates a habitat suitability ranking (HSR) based on total plant cover, plant species composition, total number of plant species, and plant height. Input data for the model is based on the measurement of these variables at known locations where this species has been found within the Jemez Mountains. Model development included the selection of habitat variables, developing a probability distribution for each variable, and applying weights to each variable based on their overall importance in defining the suitability of the habitat. The habitat variables (HV) include plant cover (HV1), grass/forb cover (HV2), plant height (HV3), number of forbs (HV4), number of grasses (HV5), and sedge/rush cover (HV6). Once the HVs were selected, probability values were calculated for each. Each variable was then assigned a ''weighting factor'' to reflect the variables' importance relative to one another with respect to contribution to quality of habitat. The least important variable, sedge/rush cover, was assigned a weight factor of ''1'' with increasing values assigned to each remaining variable as follows: number of forbs = 3, number of grasses = 3, plant height = 5, grass/forb cover = 6, and total plant cover = 7. Based on the probability values and weighting factors, a HSR is calculated as follows: HSR = (P{sub HV1}(7) + P{sub HV2}(6) + P{sub HV3}(5) + P{sub HV4}(3) + P{sub HV5}(3) + P{sub HV6}(1)). Once calculated, the HSR values are placed into one of four habitat categorical groupings by which management strategies are applied.

  17. Radon diffusion through multilayer earthen covers: models and simulations

    SciTech Connect

    Mayer, D.W.; Oster, C.A.; Nelson, R.W.; Gee, G.W.

    1981-09-01

    A capability to model and analyze the fundamental interactions that influence the diffusion of radon gas through uranium mill tailings and cover systems has been investigated. The purpose of this study is to develop the theoretical basis for modeling radon diffusion and to develop an understanding of the fundamental interactions that influence radon diffusion. This study develops the theoretical basis for modeling radon diffusion in one, two and three dimensions. The theory has been incorporated into three computer models that are used to analyze several tailings and cover configurations. This report contains a discussion of the theoretical basis for modeling radon diffusion, a discussion of the computer models used to analyze uranium mill tailings and multilayered cover systems, and presents the results that have been obtained.

  18. Simulation of stochastic diffusion via first exit times

    NASA Astrophysics Data System (ADS)

    Lötstedt, Per; Meinecke, Lina

    2015-11-01

    In molecular biology it is of interest to simulate diffusion stochastically. In the mesoscopic model we partition a biological cell into unstructured subvolumes. In each subvolume the number of molecules is recorded at each time step and molecules can jump between neighboring subvolumes to model diffusion. The jump rates can be computed by discretizing the diffusion equation on that unstructured mesh. If the mesh is of poor quality, due to a complicated cell geometry, standard discretization methods can generate negative jump coefficients, which no longer allows the interpretation as the probability to jump between the subvolumes. We propose a method based on the mean first exit time of a molecule from a subvolume, which guarantees positive jump coefficients. Two approaches to exit times, a global and a local one, are presented and tested in simulations on meshes of different quality in two and three dimensions.

  19. A Comparison of Competing Models of the News Diffusion Process.

    ERIC Educational Resources Information Center

    Mayer, Michael E.; And Others

    1990-01-01

    Investigates the diffusion of information about the space shuttle Challenger explosion by comparing loglinear models of the diffusion process. Finds that the most parsimonious model with adequate goodness of fit was a linear one in which a person's location affected how the information was heard, which in turn affected when the information was…

  20. Parameter Variability and Distributional Assumptions in the Diffusion Model

    ERIC Educational Resources Information Center

    Ratcliff, Roger

    2013-01-01

    If the diffusion model (Ratcliff & McKoon, 2008) is to account for the relative speeds of correct responses and errors, it is necessary that the components of processing identified by the model vary across the trials of a task. In standard applications, the rate at which information is accumulated by the diffusion process is assumed to be normally…

  1. Diffusion in Condensed Matter: Methods, Materials, Models

    NASA Astrophysics Data System (ADS)

    Heitjans, Paul; Kärger, Jög

    This comprehensive, handbook-style survey of diffusion in condensed matter gives detailed insight into diffusion as the process of particle transport due to stochastic movement. It is understood and presented as a phenomenon of crucial relevance for a large variety of processes and materials. In this book, all aspects of the theoretical fundamentals, experimental techniques, highlights of current developments and results for solids, liquids and interfaces are presented.

  2. Optimal Ski Jump

    ERIC Educational Resources Information Center

    Rebilas, Krzysztof

    2013-01-01

    Consider a skier who goes down a takeoff ramp, attains a speed "V", and jumps, attempting to land as far as possible down the hill below (Fig. 1). At the moment of takeoff the angle between the skier's velocity and the horizontal is [alpha]. What is the optimal angle [alpha] that makes the jump the longest possible for the fixed magnitude of the…

  3. Jumping Good Fun

    ERIC Educational Resources Information Center

    Nye, Susan B.

    2010-01-01

    Jumping rope is an activity that can be fun and enjoyable for all students. It requires minimal activity space, can be performed individually or in small groups, and is an inexpensive way to engage students in a lifelong physical activity. Jumping rope is commonly used by coaches and athletes for training purposes to improve aerobic endurance,…

  4. Neuromechanical simulation of the locust jump.

    PubMed

    Cofer, D; Cymbalyuk, G; Heitler, W J; Edwards, D H

    2010-04-01

    The neural circuitry and biomechanics of kicking in locusts have been studied to understand their roles in the control of both kicking and jumping. It has been hypothesized that the same neural circuit and biomechanics governed both behaviors but this hypothesis was not testable with current technology. We built a neuromechanical model to test this and to gain a better understanding of the role of the semi-lunar process (SLP) in jump dynamics. The jumping and kicking behaviors of the model were tested by comparing them with a variety of published data, and were found to reproduce the results from live animals. This confirmed that the kick neural circuitry can produce the jump behavior. The SLP is a set of highly sclerotized bands of cuticle that can be bent to store energy for use during kicking and jumping. It has not been possible to directly test the effects of the SLP on jump performance because it is an integral part of the joint, and attempts to remove its influence prevent the locust from being able to jump. Simulations demonstrated that the SLP can significantly increase jump distance, power, total energy and duration of the jump impulse. In addition, the geometry of the joint enables the SLP force to assist leg flexion when the leg is flexed, and to assist extension once the leg has begun to extend. PMID:20228342

  5. Thersites: a `jumping' Trojan?

    NASA Astrophysics Data System (ADS)

    Tsiganis, K.; Dvorak, R.; Pilat-Lohinger, E.

    2000-02-01

    In this paper, we examine the dynamical evolution of the asteroid (1868) Thersites, a member of the Trojan belt. Thersites is librating around the Lagrangian point L_4, following, however, a chaotic orbit. The equations of motion for Thersites as well as for a distribution of neighboring initial conditions are integrated numerically for 50 million years in the Outer Solar System model (OSS), which consists of the Sun and the four giant planets. Our results indicate that the probability that this asteroid will eventually escape from the Trojan swarm is rather high. In fact, 20% from our initial distribution escaped within the integration time. Many of the remaining ones also show characteristic `jumps' in the orbital elements, especially the inclination. Secular resonances involving the nodes of the outer planets are found to be responsible for this chaotic behavior. The width of libration and eccentricity values that lead to grossly unstable orbits are calculated and compared with previously known results on the stability of the Trojans. Finally, a very interesting behavior has been observed for one of the escaping asteroids as he `jumped' from L_4 to L_5 where he remained performing a highly inclined libration for ~ 2 Myrs before escaping from the Trojan swarm. According to Homer, Thersites was not only the ugliest of all Greeks that took part in the Trojan war, but also had the most intolerable personality. His nasty habit of making fun of everybody cost him his life, as the last person for whom he spoke ironically about was Achilles, the mightiest warrior of all Greeks, who killed Thersites with just one punch!

  6. Dynamic hysteresis modeling including skin effect using diffusion equation model

    NASA Astrophysics Data System (ADS)

    Hamada, Souad; Louai, Fatima Zohra; Nait-Said, Nasreddine; Benabou, Abdelkader

    2016-07-01

    An improved dynamic hysteresis model is proposed for the prediction of hysteresis loop of electrical steel up to mean frequencies, taking into account the skin effect. In previous works, the analytical solution of the diffusion equation for low frequency (DELF) was coupled with the inverse static Jiles-Atherton (JA) model in order to represent the hysteresis behavior for a lamination. In the present paper, this approach is improved to ensure the reproducibility of measured hysteresis loops at mean frequency. The results of simulation are compared with the experimental ones. The selected results for frequencies 50 Hz, 100 Hz, 200 Hz and 400 Hz are presented and discussed.

  7. Diffusion model of the non-stoichiometric uranium dioxide

    NASA Astrophysics Data System (ADS)

    Moore, Emily; Guéneau, Christine; Crocombette, Jean-Paul

    2013-07-01

    Uranium dioxide (UO2), which is used in light water reactors, exhibits a large range of non-stoichiometry over a wide temperature scale up to 2000 K. Understanding diffusion behavior of uranium oxides under such conditions is essential to ensure safe reactor operation. The current understanding of diffusion properties is largely limited by the stoichiometric deviations inherent to the fuel. The present DICTRA-based model considers diffusion across non-stoichiometric ranges described by experimentally available data. A vacancy and interstitial model of diffusion is applied to the U-O system as a function of its defect structure derived from CALPHAD-type thermodynamic descriptions. Oxygen and uranium self and tracer diffusion coefficients are assessed for the construction of a mobility database. Chemical diffusion coefficients of oxygen are derived with respect to the Darken relation and migration energies of defects are evaluated as a function of stoichiometric deviation.

  8. Modeling diffusion and adsorption in compacted bentonite: a critical review.

    PubMed

    Bourg, Ian C; Bourg, Alain C M; Sposito, Garrison

    2003-03-01

    The current way of describing diffusive transport through compacted clays is a simple diffusion model coupled to a linear adsorption coefficient (K(d)). To fit the observed results of cation diffusion, this model is usually extended with an adjustable "surface diffusion" coefficient. Description of the negative adsorption of anions calls for a further adjustment through the use of an "effective porosity". The final model thus includes many fitting parameters. This is inconvenient where predictive modeling is called for (e.g., for waste confinement using compacted clay liners). The diffusion/adsorption models in current use have been derived from the common hydrogeological equation of advection/dispersion/adsorption. However, certain simplifications were also borrowed without questioning their applicability to the case of compacted clays. Among these simplifications, the assumption that the volume of the adsorbed phase is negligible should be discussed. We propose a modified diffusion/adsorption model that accounts for the volume of the adsorbed phase. It suggests that diffusion through highly compacted clay takes place through the interlayers (i.e., in the adsorbed phase). Quantitative prediction of the diffusive flux will necessitate more detailed descriptions of surface reactivity and of the mobility of interlayer species. PMID:12598111

  9. A new indirect measure of diffusion model error

    SciTech Connect

    Kumar, A.; Morel, J. E.; Adams, M. L.

    2013-07-01

    We define a new indirect measure of the diffusion model error called the diffusion model error source. When this model error source is added to the diffusion equation, the transport solution for the angular-integrated intensity is obtained. This source represents a means by which a transport code can be used to generate information relating to the adequacy of diffusion theory for any given problem without actually solving the diffusion equation. The generation of this source does not relate in any way to acceleration of the iterative convergence of transport solutions. Perhaps the most well-known indirect measure of the diffusion model error is the variable-Eddington tensor. This tensor provides a great deal of information about the angular dependence of the angular intensity solution, but it is not always simple to interpret. In contrast, our diffusion model error source is a scalar that is conceptually easy to understand. In addition to defining the diffusion model error source analytically, we show how to generate this source numerically relative to the S{sub n} radiative transfer equations with linear-discontinuous spatial discretization. This numerical source is computationally tested and shown to reproduce the Sn solution for a Marshak-wave problem. (authors)

  10. Considerations on domain location according to the jump of resolution between the driving data and the nested regional climate model within the Big-Brother experiment.

    NASA Astrophysics Data System (ADS)

    Matte, D.; Laprise, R.; Theriault, J. M.; Lucas-Picher, P.

    2015-12-01

    Many studies have shown the importance of choosing the domain size adequately for dynamical downscaling with nested regional climate models. It is well known that domain should not be too large to avoid large departure from the driving data, and not be too small to provide sufficient distance from the lateral inflow to allow a full development of the small-scale features resolved by the increase resolution. Although practitioners of dynamical downscaling are well aware that the jump of resolution between the driving data and the nested regional climate model impacts the simulated climate, the issue has never been properly study. Larger is the jump of resolution, larger is the distance from the lateral inflow to fully develop the small-scale features permitted by the increase resolution. Our investigation compares direct nesting to achieve a grid mesh of 0.15o from driving data at 3.6°, 1.8o, 0.45° and 0.15° using the perfect-prognostic approach of the Big-Brother protocol. The results show that the small-scale transient-eddy component struggles to be fully developed with reduced resolution of the driving data. Overall, this study suggests that domain location (i.e. domain of interest or subsequent nested domains) must be chosen carefully according to the jump of resolution to allow the optimal development of small-scale features allowed by the increase resolution of the nested model.

  11. Exact curvilinear diffusion coefficients in the repton model

    NASA Astrophysics Data System (ADS)

    Buhot, A.

    2005-10-01

    The Rubinstein-Duke or repton model is one of the simplest lattice model of reptation for the diffusion of a polymer in a gel or a melt. Recently, a slightly modified model with hardcore interactions between the reptons has been introduced. The curvilinear diffusion coefficients of both models are exactly determined for all chain lengths. The case of periodic boundary conditions is also considered.

  12. Diffusivity and short-time dynamics in two models of silica

    NASA Astrophysics Data System (ADS)

    Lascaris, Erik; Hemmati, Mahin; Buldyrev, Sergey V.; Stanley, H. Eugene; Angell, C. Austen

    2015-03-01

    We discuss the dynamic behavior of two silica models, the BKS model (by van Beest, Kramer, and van Santen) and the WAC model (by Woodcock, Angell, and Cheeseman). Although BKS is considered the more realistic model for liquid silica, the WAC model has the unique property that it is very close to having a liquid-liquid critical point (LLCP), and this makes it particularly useful in studying the dynamics of models that do have a LLCP. We find that the diffusivity is a good indicator of how close a liquid is to criticality—the Si diffusivity shows a jump of 3-4 orders of magnitude when the pressure is reduced, which may be interpreted as an abrupt (though not first-order) transition from a high-density liquid state to a low-density liquid state. We show that this transition is captured by the Adam-Gibbs relation, which also allows us to estimate the configurational entropy of the system.

  13. Diffusivity and short-time dynamics in two models of silica.

    PubMed

    Lascaris, Erik; Hemmati, Mahin; Buldyrev, Sergey V; Stanley, H Eugene; Angell, C Austen

    2015-03-14

    We discuss the dynamic behavior of two silica models, the BKS model (by van Beest, Kramer, and van Santen) and the WAC model (by Woodcock, Angell, and Cheeseman). Although BKS is considered the more realistic model for liquid silica, the WAC model has the unique property that it is very close to having a liquid-liquid critical point (LLCP), and this makes it particularly useful in studying the dynamics of models that do have a LLCP. We find that the diffusivity is a good indicator of how close a liquid is to criticality--the Si diffusivity shows a jump of 3-4 orders of magnitude when the pressure is reduced, which may be interpreted as an abrupt (though not first-order) transition from a high-density liquid state to a low-density liquid state. We show that this transition is captured by the Adam-Gibbs relation, which also allows us to estimate the configurational entropy of the system. PMID:25770550

  14. Rope Jumping: A Preliminary Developmental Study.

    ERIC Educational Resources Information Center

    Wickstrom, Ralph L.

    The basic movement pattern used in skilled individual rope jumping performance was determined and used as a model against which to evaluate the rope jumping form used by children at various levels of skills development. The techniques of adults and nursery school children were filmed and analyzed. The specific causes of unsuccessful attempts were…

  15. Quantum walk with jumps

    NASA Astrophysics Data System (ADS)

    Lavička, H.; Potoček, V.; Kiss, T.; Lutz, E.; Jex, I.

    2011-09-01

    We analyze a special class of 1-D quantum walks (QWs) realized using optical multi-ports. We assume non-perfect multi-ports showing errors in the connectivity, i.e. with a small probability the multi-ports can connect not to their nearest neighbor but to another multi-port at a fixed distance - we call this a jump. We study two cases of QW with jumps where multiple displacements can emerge at one timestep. The first case assumes time-correlated jumps (static disorder). In the second case, we choose the positions of jumps randomly in time (dynamic disorder). The probability distributions of position of the QW walker in both instances differ significantly: dynamic disorder leads to a Gaussian-like distribution, while for static disorder we find two distinct behaviors depending on the parity of jump size. In the case of even-sized jumps, the distribution exhibits a three-peak profile around the position of the initial excitation, whereas the probability distribution in the odd case follows a Laplace-like discrete distribution modulated by additional (exponential) peaks for long times. Finally, our numerical results indicate that by an appropriate mapping a universal functional behavior of the variance of the long-time probability distribution can be revealed with respect to the scaled average of jump size.

  16. Modeling atomic hydrogen diffusion in GaAs

    NASA Astrophysics Data System (ADS)

    Kagadei, Valerii A.; Nefyodtsev, E.

    2004-05-01

    The hydrogen diffusion model in GaAs in conditions of an intense flow of penetrating atoms has been developed. It is shown that the formation undersurface diffusion barrier layer from immobile interstitial molecules of hydrogen reduce probability of atoms penetration into crystal and rate of their diffusion in GaAs, and influence on the process of shallow- and/or deep-centers passivation. It is exhibited that the influence of diffusion barrier should be taken into account at optimum mode selection of GaAs structure hydrogenation.

  17. A computational kinetic model of diffusion for molecular systems

    PubMed Central

    Teo, Ivan; Schulten, Klaus

    2013-01-01

    Regulation of biomolecular transport in cells involves intra-protein steps like gating and passage through channels, but these steps are preceded by extra-protein steps, namely, diffusive approach and admittance of solutes. The extra-protein steps develop over a 10–100 nm length scale typically in a highly particular environment, characterized through the protein's geometry, surrounding electrostatic field, and location. In order to account for solute energetics and mobility of solutes in this environment at a relevant resolution, we propose a particle-based kinetic model of diffusion based on a Markov State Model framework. Prerequisite input data consist of diffusion coefficient and potential of mean force maps generated from extensive molecular dynamics simulations of proteins and their environment that sample multi-nanosecond durations. The suggested diffusion model can describe transport processes beyond microsecond duration, relevant for biological function and beyond the realm of molecular dynamics simulation. For this purpose the systems are represented by a discrete set of states specified by the positions, volumes, and surface elements of Voronoi grid cells distributed according to a density function resolving the often intricate relevant diffusion space. Validation tests carried out for generic diffusion spaces show that the model and the associated Brownian motion algorithm are viable over a large range of parameter values such as time step, diffusion coefficient, and grid density. A concrete application of the method is demonstrated for ion diffusion around and through the Eschericia coli mechanosensitive channel of small conductance ecMscS. PMID:24089741

  18. A computational kinetic model of diffusion for molecular systems

    NASA Astrophysics Data System (ADS)

    Teo, Ivan; Schulten, Klaus

    2013-09-01

    Regulation of biomolecular transport in cells involves intra-protein steps like gating and passage through channels, but these steps are preceded by extra-protein steps, namely, diffusive approach and admittance of solutes. The extra-protein steps develop over a 10-100 nm length scale typically in a highly particular environment, characterized through the protein's geometry, surrounding electrostatic field, and location. In order to account for solute energetics and mobility of solutes in this environment at a relevant resolution, we propose a particle-based kinetic model of diffusion based on a Markov State Model framework. Prerequisite input data consist of diffusion coefficient and potential of mean force maps generated from extensive molecular dynamics simulations of proteins and their environment that sample multi-nanosecond durations. The suggested diffusion model can describe transport processes beyond microsecond duration, relevant for biological function and beyond the realm of molecular dynamics simulation. For this purpose the systems are represented by a discrete set of states specified by the positions, volumes, and surface elements of Voronoi grid cells distributed according to a density function resolving the often intricate relevant diffusion space. Validation tests carried out for generic diffusion spaces show that the model and the associated Brownian motion algorithm are viable over a large range of parameter values such as time step, diffusion coefficient, and grid density. A concrete application of the method is demonstrated for ion diffusion around and through the Eschericia coli mechanosensitive channel of small conductance ecMscS.

  19. A diffusivity model for predicting VOC diffusion in porous building materials based on fractal theory.

    PubMed

    Liu, Yanfeng; Zhou, Xiaojun; Wang, Dengjia; Song, Cong; Liu, Jiaping

    2015-12-15

    Most building materials are porous media, and the internal diffusion coefficients of such materials have an important influences on the emission characteristics of volatile organic compounds (VOCs). The pore structure of porous building materials has a significant impact on the diffusion coefficient. However, the complex structural characteristics bring great difficulties to the model development. The existing prediction models of the diffusion coefficient are flawed and need to be improved. Using scanning electron microscope (SEM) observations and mercury intrusion porosimetry (MIP) tests of typical porous building materials, this study developed a new diffusivity model: the multistage series-connection fractal capillary-bundle (MSFC) model. The model considers the variable-diameter capillaries formed by macropores connected in series as the main mass transfer paths, and the diameter distribution of the capillary bundles obeys a fractal power law in the cross section. In addition, the tortuosity of the macrocapillary segments with different diameters is obtained by the fractal theory. Mesopores serve as the connections between the macrocapillary segments rather than as the main mass transfer paths. The theoretical results obtained using the MSFC model yielded a highly accurate prediction of the diffusion coefficients and were in a good agreement with the VOC concentration measurements in the environmental test chamber. PMID:26291782

  20. Modeling anomalous diffusion of dense fluids in carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Wang, Gerald; Hadjiconstantinou, Nicolas

    2015-11-01

    Molecular diffusive mechanisms exhibited under nanoconfinement can differ considerably from the Fickian self-diffusion expected in a bulk fluid. We propose a theoretical description of this phenomenon in a nanofluidic system of considerable interest - namely, a dense fluid confined within a carbon nanotube (CNT). We show that the anomalous diffusion reported in the literature is closely related to the fluid layering widely observed in this system and recently theoretically described [Wang and Hadjiconstantinou, Physics of Fluids, 052006, 2015]. In particular, we find that the key to describing the anomalous molecular diffusion (within sufficiently large CNTs) lies in recognizing that the diffusion mechanism is spatially dependent: while fluid in the center of the nanotube (at least three molecular diameters away from the wall) exhibits Fickian diffusion, fluid near the CNT wall can demonstrate non-Fickian diffusive behavior. The previously reported anomalous diffusive behavior can be reproduced, to a good approximation level, by appropriately combining the bulk and near-wall behavior to form a model for the overall diffusion rate within the nanotube. Such models produce results in quantitative agreement with molecular dynamics simulations.

  1. Comparison of Turbulent Thermal Diffusivity and Scalar Variance Models

    NASA Technical Reports Server (NTRS)

    Yoder, Dennis A.

    2016-01-01

    This paper will include a detailed comparison of heat transfer models that rely upon the thermal diffusivity. The goals are to inform users of the development history of the various models and the resulting differences in model formulations, as well as to evaluate the models on a variety of validation cases so that users might better understand which models are more broadly applicable.

  2. Model calculations for diffuse molecular clouds. [interstellar hydrogen cloud model

    NASA Technical Reports Server (NTRS)

    Glassgold, A. E.; Langer, W. D.

    1974-01-01

    A steady state isobaric cloud model is developed. The pressure, thermal, electrical, and chemical balance equations are solved simultaneously with a simple one dimensional approximation to the equation of radiative transfer appropriate to diffuse clouds. Cooling is mainly by CII fine structure transitions, and a variety of heating mechanisms are considered. Particular attention is given to the abundance variation of H2. Inhomogeneous density distributions are obtained because of the attenuation of the interstellar UV field and the conversion from atomic to molecular hyrodgen. The effects of changing the model parameters are described and the applicability of the model to OAO-3 observations is discussed. Good qualitative agreement with the fractional H2 abundance determinations has been obtained. The observed kinetic temperatures near 80 K can also be achieved by grain photoelectron heating. The problem of the electron density is solved taking special account of the various hydrogen ions as well as heavier ones.

  3. How coalescing droplets jump.

    PubMed

    Enright, Ryan; Miljkovic, Nenad; Sprittles, James; Nolan, Kevin; Mitchell, Robert; Wang, Evelyn N

    2014-10-28

    Surface engineering at the nanoscale is a rapidly developing field that promises to impact a range of applications including energy production, water desalination, self-cleaning and anti-icing surfaces, thermal management of electronics, microfluidic platforms, and environmental pollution control. As the area advances, more detailed insights of dynamic wetting interactions on these surfaces are needed. In particular, the coalescence of two or more droplets on ultra-low adhesion surfaces leads to droplet jumping. Here we show, through detailed measurements of jumping droplets during water condensation coupled with numerical simulations of binary droplet coalescence, that this process is fundamentally inefficient with only a small fraction of the available excess surface energy (≲ 6%) convertible into translational kinetic energy. These findings clarify the role of internal fluid dynamics during the jumping droplet coalescence process and underpin the development of systems that can harness jumping droplets for a wide range of applications. PMID:25171210

  4. Jump for the Moon

    NASA Video Gallery

    Increase bone strength and improve heart and other muscle endurance by performing jump training with a rope, both while stationary and moving. The Train Like an Astronaut project uses the excitemen...

  5. Suicide by Jumping.

    PubMed

    Beautrais, Annette

    2007-01-01

    Research on suicide by jumping is summarized. The incidence of suicide by this method varies but tends to be higher in cities, city states, or countries that have extensive high-rise housing. Most suicides by jumping occur from high-rise residential housing units. However, our knowledge about suicide by jumping tends to be limited to a small number of reports from sites, often bridges, which become well-known as places from which to take one's life. Media reports of newsworthy suicides from these sites appear to encourage imitative behavior. Prevention strategies have focused upon limiting suicides from iconic sites by surveillance, barriers, muted media reporting, and signage offering help and telephone hotlines. A small number of studies provides evidence that installing barriers at popular jumping sites reduces suicides from those sites. There are few reports of efforts to reduce suicides from high-rise residential buildings. PMID:26212196

  6. What can the diffusion model tell us about prospective memory?

    PubMed

    Horn, Sebastian S; Bayen, Ute J; Smith, Rebekah E

    2011-03-01

    Cognitive process models, such as Ratcliff's (1978) diffusion model, are useful tools for examining cost or interference effects in event-based prospective memory (PM). The diffusion model includes several parameters that provide insight into how and why ongoing-task performance may be affected by a PM task and is ideally suited to analyse performance because both reaction time and accuracy are taken into account. Separate analyses of these measures can easily yield misleading interpretations in cases of speed-accuracy trade-offs. The diffusion model allows us to measure possible criterion shifts and is thus an important methodological improvement over standard analyses. Performance in an ongoing lexical-decision task was analysed with the diffusion model. The results suggest that criterion shifts play an important role when a PM task is added, but do not fully explain the cost effect on reaction time. PMID:21443332

  7. Nonequilibrium drift-diffusion model for organic semiconductor devices

    NASA Astrophysics Data System (ADS)

    Felekidis, Nikolaos; Melianas, Armantas; Kemerink, Martijn

    2016-07-01

    Two prevailing formalisms are currently used to model charge transport in organic semiconductor devices. Drift-diffusion calculations, on the one hand, are time effective but assume local thermodynamic equilibrium, which is not always realistic. Kinetic Monte Carlo models, on the other hand, do not require this assumption but are computationally expensive. Here, we present a nonequilibrium drift-diffusion model that bridges this gap by fusing the established multiple trap and release formalism with the drift-diffusion transport equation. For a prototypical photovoltaic system the model is shown to quantitatively describe, with a single set of parameters, experiments probing (1) temperature-dependent steady-state charge transport—space-charge limited currents, and (2) time-resolved charge transport and relaxation of nonequilibrated photocreated charges. Moreover, the outputs of the developed kinetic drift-diffusion model are an order of magnitude, or more, faster to compute and in good agreement with kinetic Monte Carlo calculations.

  8. Jumping without using legs: the jump of the click-beetles (Elateridae) is morphologically constrained.

    PubMed

    Ribak, Gal; Weihs, Daniel

    2011-01-01

    To return to their feet, inverted click-beetles (Elateridae) jump without using their legs. When a beetle is resting on its dorsal side, a hinge mechanism is locked to store elastic energy in the body and releases it abruptly to launch the beetle into the air. While the functional morphology of the jumping mechanism is well known, the level of control that the beetle has over this jumping technique and the mechanical constraints governing the jumps are not entirely clear. Here we show that while body rotations in air are highly variable, the jumps are morphologically constrained to a constant "takeoff" angle (79.9°±1.56°, n = 9 beetles) that directs 98% of the jumping force vertically against gravity. A physical-mathematical model of the jumping action, combined with measurements from live beetle, imply that the beetle may control the speed at takeoff but not the jumping angle. In addition, the model shows that very subtle changes in the exact point of contact with the ground can explain the vigorous rotations of the body seen while the beetle is airborne. These findings suggest that the evolution of this unique non-legged jumping mechanism resulted in a jumping technique that is capable of launching the body high into the air but it is too constrained and unstable to allow control of body orientation at landing. PMID:21698194

  9. Improved knowledge diffusion model based on the collaboration hypernetwork

    NASA Astrophysics Data System (ADS)

    Wang, Jiang-Pan; Guo, Qiang; Yang, Guang-Yong; Liu, Jian-Guo

    2015-06-01

    The process for absorbing knowledge becomes an essential element for innovation in firms and in adapting to changes in the competitive environment. In this paper, we present an improved knowledge diffusion hypernetwork (IKDH) model based on the idea that knowledge will spread from the target node to all its neighbors in terms of the hyperedge and knowledge stock. We apply the average knowledge stock V(t) , the variable σ2(t) , and the variance coefficient c(t) to evaluate the performance of knowledge diffusion. By analyzing different knowledge diffusion ways, selection ways of the highly knowledgeable nodes, hypernetwork sizes and hypernetwork structures for the performance of knowledge diffusion, results show that the diffusion speed of IKDH model is 3.64 times faster than that of traditional knowledge diffusion (TKDH) model. Besides, it is three times faster to diffuse knowledge by randomly selecting "expert" nodes than that by selecting large-hyperdegree nodes as "expert" nodes. Furthermore, either the closer network structure or smaller network size results in the faster knowledge diffusion.

  10. Diffusion models for Jupiter's radiation belt

    NASA Technical Reports Server (NTRS)

    Jacques, S. A.; Davis, L., Jr.

    1972-01-01

    Solutions are given for the diffusion of trapped particles in a planetary magnetic field in which the first and second adiabatic invariants are preserved but the third is not, using as boundary conditions a fixed density at the outer boundary (the magnetopause) and a zero density at an inner boundary (the planetary surface). Losses to an orbiting natural satellite are included and an approximate evaluation is made of the effects of the synchrotron radiation on the energy of relativistic electrons. Choosing parameters appropriate to Jupiter, the electrons required to produce the observed synchrotron radiation are explained. If a speculative mechanism in which the diffusion is driven by ionospheric wind is the true explanation of the electrons producing the synchrotron emission it can be concluded that Jupiter's inner magnetosphere is occupied by an energetic proton flux that would be a serious hazard to spacecraft.

  11. Theoretical description of the gaseous Knudsen layer in Couette flow based on the second-order constitutive and slip-jump models

    NASA Astrophysics Data System (ADS)

    Myong, R. S.

    2016-01-01

    The Knudsen layer, found in the region of gas flow very close (in order of a few mean free paths) to the solid surfaces, plays a critical role in accurately modeling rarefied and micro-scale gases. In various previous investigations, abnormal behaviors at high Knudsen numbers such as nonlinear velocity profile, velocity gradient singularity, and pronounced thermal effect are identified to exist in the Knudsen layer. However, some behaviors, in particular, the velocity gradient singularity near the surface and higher temperature, remain elusive in the continuum framework. In this study, based on the second-order macroscopic constitutive equation recently derived from the kinetic Boltzmann equation via the balanced closure and cumulant expansion [R. S. Myong, "On the high Mach number shock structure singularity caused by overreach of Maxwellian molecules," Phys. Fluids 26(5), 056102 (2014)], the macroscopic second-order constitutive and slip-jump models that are able to explain qualitatively all the known non-classical and non-isothermal behaviors are proposed. As a result, new analytical solutions to the Knudsen layer in Couette flow, in conjunction with the algebraic nonlinearly coupled second-order constitutive and Maxwell velocity slip and Smoluchowski temperature jump models, are derived. It was shown that the velocity gradient singularity in the Knudsen layer can be explained within the continuum framework, when the nonlinearity of the constitutive model is morphed into the determination of the velocity slip in the nonlinear slip and jump model. Also, the smaller velocity slip and shear stress are shown to be caused by the shear-thinning property of the second-order constitutive model, that is, vanishing effective viscosity at high Knudsen number.

  12. Diffusion coefficient and shear viscosity of rigid water models.

    PubMed

    Tazi, Sami; Boţan, Alexandru; Salanne, Mathieu; Marry, Virginie; Turq, Pierre; Rotenberg, Benjamin

    2012-07-18

    We report the diffusion coefficient and viscosity of popular rigid water models: two non-polarizable ones (SPC/E with three sites, and TIP4P/2005 with four sites) and a polarizable one (Dang-Chang, four sites). We exploit the dependence of the diffusion coefficient on the system size (Yeh and Hummer 2004 J. Phys. Chem. B 108 15873) to obtain the size-independent value. This also provides an estimate of the viscosity of all water models, which we compare to the Green-Kubo result. In all cases, a good agreement is found. The TIP4P/2005 model is in better agreement with the experimental data for both diffusion and viscosity. The SPC/E and Dang-Chang models overestimate the diffusion coefficient and underestimate the viscosity. PMID:22739097

  13. Addition of Diffusion Model to MELCOR and Comparison with Data

    SciTech Connect

    Brad Merrill; Richard Moore; Chang Oh

    2004-06-01

    A chemical diffusion model was incorporated into the thermal-hydraulics package of the MELCOR Severe Accident code (Reference 1) for analyzing air ingress events for a very high temperature gas-cooled reactor.

  14. Modelling oxygen self-diffusion in UO2 under pressure

    DOE PAGESBeta

    Cooper, Michael William D.; Grimes, R. W.; Fitzpatrick, M. E.; Chroneos, A.

    2015-10-22

    Access to values for oxygen self-diffusion over a range of temperatures and pressures in UO2 is important to nuclear fuel applications. Here, elastic and expansivity data are used in the framework of a thermodynamic model, the cBΩ model, to derive the oxygen self-diffusion coefficient in UO2 over a range of pressures (0–10 GPa) and temperatures (300–1900 K). Furthermore, the significant reduction in oxygen self-diffusion as a function of increasing hydrostatic pressure, and the associated increase in activation energy, is identified.

  15. A model for diffusive systems: Beyond the Arrhenius mechanism

    NASA Astrophysics Data System (ADS)

    Rosa, A. C. P.; Vaveliuk, Pablo; Mundim, Kleber C.; Moret, M. A.

    2016-05-01

    Diffusivity in supercooled liquids was observed to exhibit a non-Arrhenius behavior near the glass-transition temperature. This process, which occurs where the activation energy depends on the temperature, suggests the possibility of a metastable equilibrium. This peculiar phenomenon cannot be explained using the usual Markovian stochastic models. Based on a non-linear Fokker-Planck equation, we propose a diffusion coefficient that is proportional to the supercooled-liquid concentration. The proposed model allows us to explain the anomalous behavior of the diffusivity robustly. We demonstrate that this new approach is consistent with experimental patterns. Besides, it could be applied to non-Arrhenius chemical kinetics.

  16. Mathematical modelling of diffusion and reaction in blocked zeolite catalysts

    SciTech Connect

    Sundaresan, S.; Hall, C.K.

    1985-01-01

    A mathematical model for diffusion and reaction in blocked zeolites is developed which takes into account nonidealities arising from interaction between sorbed molecules as well as the effect of pore and surface blocking. The model combines a microscopic approach, in which expressions for chemical potential and diffusive fluxes are calculated within the lattice-gas framework, with the more traditional continuum approach which takes into account the effect of surface blocking. The effect of pore blocking on the diffusive fluxes is accounted for through an effective medium approximation.

  17. Internal hydraulic jumps with large upstream shear

    NASA Astrophysics Data System (ADS)

    Ogden, Kelly; Helfrich, Karl

    2015-11-01

    Internal hydraulic jumps in approximately two-layered flows with large upstream shear are investigated using numerical simulations. The simulations allow continuous density and velocity profiles, and a jump is forced to develop by downstream topography, similar to the experiments conducted by Wilkinson and Wood (1971). High shear jumps are found to exhibit significantly more entrainment than low shear jumps. Furthermore, the downstream structure of the flow has an important effect on the jump properties. Jumps with a slow upper (inactive) layer exhibit a velocity minimum downstream of the jump, resulting in a sub-critical downstream state, while flows with the same upstream vertical shear and a larger barotropic velocity remain super-critical downstream of the jump. A two-layer theory is modified to account for the vertical structure of the downstream density and velocity profiles and entrainment is allowed through a modification of the approach of Holland et al. (2002). The resulting theory can be matched reasonably well with the numerical simulations. However, the results are very sensitive to how the downstream vertical profiles of velocity and density are incorporated into the layered model, highlighting the difficulty of the two layer approximation when the shear is large.

  18. A discrete time random walk model for anomalous diffusion

    NASA Astrophysics Data System (ADS)

    Angstmann, C. N.; Donnelly, I. C.; Henry, B. I.; Nichols, J. A.

    2015-07-01

    The continuous time random walk, introduced in the physics literature by Montroll and Weiss, has been widely used to model anomalous diffusion in external force fields. One of the features of this model is that the governing equations for the evolution of the probability density function, in the diffusion limit, can generally be simplified using fractional calculus. This has in turn led to intensive research efforts over the past decade to develop robust numerical methods for the governing equations, represented as fractional partial differential equations. Here we introduce a discrete time random walk that can also be used to model anomalous diffusion in an external force field. The governing evolution equations for the probability density function share the continuous time random walk diffusion limit. Thus the discrete time random walk provides a novel numerical method for solving anomalous diffusion equations in the diffusion limit, including the fractional Fokker-Planck equation. This method has the clear advantage that the discretisation of the diffusion limit equation, which is necessary for numerical analysis, is itself a well defined physical process. Some examples using the discrete time random walk to provide numerical solutions of the probability density function for anomalous subdiffusion, including forcing, are provided.

  19. When Is a Diffusion Profile Not a Diffusion Profile? the Importance of Initial State Assumptions in Diffusion Modelling

    NASA Astrophysics Data System (ADS)

    Morgan, D. J.; Chamberlain, K. J.; Kahl, M.; Potts, N. J.; Pankhurst, M. J.; Wilson, C. J. N.

    2014-12-01

    Over the past 20 years, diffusion chronometers have evolved from a niche tool into one of routine application, with more practitioners, new tools and increasingly large datasets. As we expand the horizons of diffusional geochronometry, it is worth taking stock of developments in methodologies and data acquisition, and taking time to revisit the underpinnings of the technique. Data collected as part of recent projects on Campi Flegrei, the Bishop Tuff and Fimmvörðuháls-Eyjafjallajökull are here used to investigate the initial state assumption, an absolutely vital aspect underpinning most diffusional work and one that is rarely evaluated despite its fundamental importance. To illustrate the nature of the problem we consider two widely-used element-mineral systems for felsic and mafic systems, respectively. First, barium and strontium profiles within sanidine crystals, modelled independently, can give strongly contrasting timescales from the same crystal zone. We can reconcile the datasets only for a situation where the initial boundary within the crystal was not a sharp step function, but relatively fuzzy before diffusion onset. This fuzziness effectively starts both chronometers off with an apparent, and false, pre-existing timescale, impacting the slower-diffusing barium much more strongly than the faster-diffusing strontium, yielding thousands of years of non-existent diffusion history. By combining both elements, a starting width of tens of microns can be shown, shortening the true diffusive timescales from tens of thousands of years to hundreds. Second, in olivine, we encounter different growth-related problems. Here, Fe-Mg interdiffusion occurs at a rate comparable to growth, with the compound nature of zonation making it difficult to extract the diffusion component. This requires a treatment of changing boundary conditions and sequential growth to generate the curvature seen in natural data, in order to recover timescales for anything but the outermost

  20. Scaling in the Diffusion Limited Aggregation Model

    NASA Astrophysics Data System (ADS)

    Menshutin, Anton

    2012-01-01

    We present a self-consistent picture of diffusion limited aggregation (DLA) growth based on the assumption that the probability density P(r,N) for the next particle to be attached within the distance r to the center of the cluster is expressible in the scale-invariant form P[r/Rdep(N)]. It follows from this assumption that there is no multiscaling issue in DLA and there is only a single fractal dimension D for all length scales. We check our assumption self-consistently by calculating the particle-density distribution with a measured P(r/Rdep) function on an ensemble with 1000 clusters of 5×107 particles each. We also show that a nontrivial multiscaling function D(x) can be obtained only when small clusters (N<10000) are used to calculate D(x). Hence, multiscaling is a finite-size effect and is not intrinsic to DLA.

  1. Update on Advection-Diffusion Purge Flow Model

    NASA Technical Reports Server (NTRS)

    Brieda, Lubos

    2015-01-01

    Gaseous purge is commonly used in sensitive spacecraft optical or electronic instruments to prevent infiltration of contaminants and/or water vapor. Typically, purge is sized using simplistic zero-dimensional models that do not take into account instrument geometry, surface effects, and the dependence of diffusive flux on the concentration gradient. For this reason, an axisymmetric computational fluid dynamics (CFD) simulation was recently developed to model contaminant infiltration and removal by purge. The solver uses a combined Navier-Stokes and Advection-Diffusion approach. In this talk, we report on updates in the model, namely inclusion of a particulate transport model.

  2. SOLVING THE TWO-DIMENSIONAL DIFFUSION FLOW MODEL.

    USGS Publications Warehouse

    Hromadka, T.V., II; Lai, Chintu

    1985-01-01

    A simplification of the two-dimensional (2-D) continuity and momentum equations is the diffusion equation. To investigate its capability, the numerical model using the diffusion approach is applied to a hypothetical failure problem of a regional water reservoir. The model is based on an explicit, integrated finite-difference scheme, and the floodplain is simulated by a popular home computer which supports 64K FORTRAN. Though simple, the 2-D model can simulate some interesting flooding effects that a 1-D full dynamic model cannot.

  3. Innovation Diffusion Model in Higher Education: Case Study of E-Learning Diffusion

    ERIC Educational Resources Information Center

    Buc, Sanjana; Divjak, Blaženka

    2015-01-01

    The diffusion of innovation (DOI) is critical for any organization and especially nowadays for higher education institutions (HEIs) in the light of vast pressure of emerging educational technologies as well as of the demand of economy and society. DOI takes into account the initial and the implementation phase. The conceptual model of DOI in…

  4. Effluent from diffuse hydrothermal venting. 1: A simple model of plumes from diffuse hydrothermal sources

    SciTech Connect

    Trivett, D.A.

    1994-09-01

    This paper focuses on modeling the fate of effluent from diffuse seafloor hydrothermal activity after it has been vented into the water column. The model was formulated using a number of simplifying assumptions which permit direct application of this model to field measurements. I have limited the configurations to those where the hydrothermal outflow velocities are smaller than horizontal current. I assume that the entrainment of ambient seawater into the plume is constant over the length of the plume. This permits formulation of a first-order relation for the rise height and dilution in a diffuse hydrothermal plume as a function of downstream distance. The analytic model is compared with a simple laboratory simulation of the hydrothermal flow. The results suggest that diffuse hydrothermal effluent will penetrate to a height in the water column that is proportional to the overall dimension of the diffuse vent patch, multiplied by a dimensionless plume intensity parameter. I also ahow relations for plume dilution which will be compared with field data in part 2 of this work.

  5. Gas-phase diffusion in porous media: Comparison of models

    SciTech Connect

    Webb, S.W.

    1998-09-01

    Two models are commonly used to analyze gas-phase diffusion in porous media in the presence of advection, the Advective-Dispersive Model (ADM) and the Dusty-gas Model (DGM). The ADM, which is used in TOUGH2, is based on a simple linear addition of advection calculated by Darcy`s law and ordinary diffusion using Fick`s law with a porosity-tortuosity-gas saturation multiplier to account for the porous medium. Another approach for gas-phase transport in porous media is the Dusty-Gas Model. This model applies the kinetic theory of gases to the gaseous components and the porous media (or dust) to combine transport due to diffusion and advection that includes porous medium effects. The two approaches are compared in this paper.

  6. Diffusion of Li in olivine. Part I: Experimental observations and a multi species diffusion model

    NASA Astrophysics Data System (ADS)

    Dohmen, Ralf; Kasemann, Simone A.; Coogan, Laurence; Chakraborty, Sumit

    2010-01-01

    There are an increasing number of studies that focus on the systematics of the distribution of Li and its isotopes among different geochemical reservoirs. These studies have found that Li is relatively mobile compared to many other elements (e.g., Fe, Mg), and diffusion has been considered as a mechanism to generate large isotopic fractionations even at high temperatures. In order to quantify some of these aspects, we have measured Li diffusion rates experimentally along [0 0 1] of single crystals of olivines from San Carlos, Arizona and Pakistan, at 800-1200 °C at a total pressure of 100 kPa and fO 2 ≈ WM buffer. A complex diffusion behavior of Li is observed, indicating that two mechanisms of diffusion (a fast and a slower one) operate simultaneously. The behavior is well described by a model that partitions Li between two different sites in olivine - an octahedral site (Li Me) and an interstitial site (Li i). Transport of Li is a combination of hopping within and between each of these kinds of sites involving also vacancies on the octahedral site (V Me). It is assumed that the homogeneous reaction (Li Me = V Me + Li i) that maintains equilibrium distribution of Li between the sites is instantaneous compared to the timescales of all other processes associated with diffusive transport. One consequence of this mode of transport of Li in olivine is that the shape and length of diffusion profiles depend on the boundary conditions imposed at the surface of a crystal; i.e., the chemical environment (e.g., fO 2, aLi 4SiO 4), in addition to temperature and pressure. Our model describes the variable experimentally determined Li-profile shapes produced at different temperatures and with different boundary conditions, as well as their time evolution, quantitatively. Modeling the observed isotopic fractionation shows that 6Li diffuses about 5% faster than 7Li on the interstitial site. Inspection of published data on Li distribution in natural olivines that are available

  7. Biomechanics of jumping in the flea.

    PubMed

    Sutton, Gregory P; Burrows, Malcolm

    2011-03-01

    It has long been established that fleas jump by storing and releasing energy in a cuticular spring, but it is not known how forces from that spring are transmitted to the ground. One hypothesis is that the recoil of the spring pushes the trochanter onto the ground, thereby generating the jump. A second hypothesis is that the recoil of the spring acts through a lever system to push the tibia and tarsus onto the ground. To decide which of these two hypotheses is correct, we built a kinetic model to simulate the different possible velocities and accelerations produced by each proposed process and compared those simulations with the kinematics measured from high-speed images of natural jumping. The in vivo velocity and acceleration kinematics are consistent with the model that directs ground forces through the tibia and tarsus. Moreover, in some natural jumps there was no contact between the trochanter and the ground. There were also no observable differences between the kinematics of jumps that began with the trochanter on the ground and jumps that did not. Scanning electron microscopy showed that the tibia and tarsus have spines appropriate for applying forces to the ground, whereas no such structures were seen on the trochanter. Based on these observations, we discount the hypothesis that fleas use their trochantera to apply forces to the ground and conclude that fleas jump by applying forces to the ground through the end of the tibiae. PMID:21307071

  8. Effects of microscopic diffusion and rotational mixing on stellar models

    NASA Astrophysics Data System (ADS)

    Chaboyer, Brian Charles

    1993-01-01

    We have calculated evolutionary tracks for halo stars and constructed isochrones with alpha-enhanced compositions which cover the entire globular cluster metallicity range and include the effects of the diffusion of He-4. We find that including the effects of helium diffusion has a negligible effect (less than 0.5 Gyr) on the derived ages of globular clusters. Regardless of the inclusion of helium diffusion, we find a significant age spread of 5 Gyr among the globular clusters. The oldest globular cluster studied was M92 with an age of 17 +/- 2 Gyr old. The stellar models may be tested by comparing the Li-7 depletion and surface rotation rates to observations in young clusters stars. The observed Li-7 abundances clearly indicate that standard or diffusive models do not deplete enough Li-7. Instabilities induced by rotation provide an additional mixing mechanism. For this reason the stellar evolution code was modified to include the combined effects of diffusion and rotational mixing of H-1, He-4 and the trace elements He-3, Li-7 and Be-9. The calibrated solar models have a convection zone depth of 0.709-0.714 solar radius, in excellent agreement with the observed depth of (0.713 +/- 0.003) solar radius. The rotational mixing inhibits the diffusion in the outer parts of the models, leading to a decrease in the envelope diffusion by 50-80 percent. These models are able to reproduce the Li-7 abundances and rotation velocities observed in young cluster stars. Observations of Li-7 abundances in extremely metal poor halo stars provide another test of the stellar models. Standard models do a good job of fitting the observed Li-7 abundances and predict a primordial Li-7 abundance of log N(Li) = 2.24 +/- 0.03. Models of hot stars which include microscopic diffusion, but not rotational mixing, deplete too much Li-7. The (Fe/H) = 2.28 stellar models which include both diffusion and rotational mixing provide an excellent match to the observations, and predict a primordial Li-7

  9. Scaling in the diffusion limited aggregation model.

    PubMed

    Menshutin, Anton

    2012-01-01

    We present a self-consistent picture of diffusion limited aggregation (DLA) growth based on the assumption that the probability density P(r,N) for the next particle to be attached within the distance r to the center of the cluster is expressible in the scale-invariant form P[r/R{dep}(N)]. It follows from this assumption that there is no multiscaling issue in DLA and there is only a single fractal dimension D for all length scales. We check our assumption self-consistently by calculating the particle-density distribution with a measured P(r/R{dep}) function on an ensemble with 1000 clusters of 5×10{7} particles each. We also show that a nontrivial multiscaling function D(x) can be obtained only when small clusters (N<10 000) are used to calculate D(x). Hence, multiscaling is a finite-size effect and is not intrinsic to DLA. PMID:22304265

  10. Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations

    PubMed Central

    Prigozhin, Maxim B.; Schulten, Klaus; Gruebele, Martin

    2016-01-01

    The unimolecular folding reaction of small proteins is now amenable to a very direct mechanistic comparison between experiment and simulation. We present such a comparison of microsecond pressure and temperature jump refolding kinetics of the engineered WW domain FiP35, a model system for beta sheet folding. Both perturbations produce experimentally a faster and a slower kinetic phase, the “slow” microsecond phase being activated. The fast phase shows differences between perturbation methods and is closer to the downhill limit by temperature jump, but closer to the transiently populated intermediate limit by pressure jump. These observations make more demands on simulations of the folding process than just a rough comparison of time scales. To complement experiments, we calculated several pressure jump and temperature jump all-atom molecular dynamics trajectories in explicit solvent, where FiP35 folded in five of the six simulations. We analyzed our pressure jump simulations by kinetic modeling and found that the pressure jump experiments and MD simulations are most consistent with a 4-state kinetic mechanism. Together, our experimental and computational data highlight FiP35’s position at the boundary where activated intermediates and downhill folding meet, and we show that this model protein is an excellent candidate for further pressure jump molecular dynamics studies to compare experiment and modeling at the folding mechanism level. PMID:25988868

  11. Cohabitation reaction-diffusion model for virus focal infections

    NASA Astrophysics Data System (ADS)

    Amor, Daniel R.; Fort, Joaquim

    2014-12-01

    The propagation of virus infection fronts has been typically modeled using a set of classical (noncohabitation) reaction-diffusion equations for interacting species. However, for some single-species systems it has been recently shown that noncohabitation reaction-diffusion equations may lead to unrealistic descriptions. We argue that previous virus infection models also have this limitation, because they assume that a virion can simultaneously reproduce inside a cell and diffuse away from it. For this reason, we build a several-species cohabitation model that does not have this limitation. Furthermore, we perform a sensitivity analysis for the most relevant parameters of the model, and we compare the predicted infection speed with observed data for two different strains of the T7 virus.

  12. A Novel Restricted Diffusion Model of Evoked Dopamine

    PubMed Central

    2015-01-01

    In vivo fast-scan cyclic voltammetry provides high-fidelity recordings of electrically evoked dopamine release in the rat striatum. The evoked responses are suitable targets for numerical modeling because the frequency and duration of the stimulus are exactly known. Responses recorded in the dorsal and ventral striatum of the rat do not bear out the predictions of a numerical model that assumes the presence of a diffusion gap interposed between the recording electrode and nearby dopamine terminals. Recent findings, however, suggest that dopamine may be subject to restricted diffusion processes in brain extracellular space. A numerical model cast to account for restricted diffusion produces excellent agreement between simulated and observed responses recorded under a broad range of anatomical, stimulus, and pharmacological conditions. The numerical model requires four, and in some cases only three, adjustable parameters and produces meaningful kinetic parameter values. PMID:24983330

  13. Modeling mammary gland morphogenesis as a reaction-diffusion process.

    PubMed

    Grant, Mark R; Hunt, C Anthony; Xia, Lan; Fata, Jimmie E; Bissell, Mina J

    2004-01-01

    Mammary ducts are formed through a process of branching morphogenesis. We present results of experiments using a simulation model of this process, and discuss their implications for understanding mammary duct extension and bifurcation. The model is a cellular automaton approximation of a reaction-diffusion process in which matrix metalloproteinases represent the activator, inhibitors of matrix metalloproteinases represent the inhibitor, and growth factors serve as a substrate. We compare results from the simulation model with those from in-vivo experiments as part of an assessment of whether duct extension and bifurcation during morphogenesis may be a consequence of a reaction-diffusion mechanism mediated by MMPs and TIMPs. PMID:17271768

  14. Egg Bungee Jump!

    ERIC Educational Resources Information Center

    Fitzgerald, Mike; Brand, Lance

    2004-01-01

    In this article, the authors present an egg bungee jumping activity. This activity introduces students to ways that engineers might apply calculations of failure to meet a challenge. Students are required to use common, everyday materials such as rubber bands, string, plastic bags, and eggs. They will apply technological problem solving, material…

  15. Jump into Action

    ERIC Educational Resources Information Center

    Ball, Stephen; Cohen, Ann; Meyer, Margaret

    2012-01-01

    Jump Into Action (JIA) is a school-based team-taught program to help fifth-grade students make healthy food choices and be more active. The JIA team (physical education teacher, classroom teacher, school nurse, and parent) work together to provide a supportive environment as students set goals to improve food choices and increase activity.…

  16. Walking and jumping spores

    NASA Astrophysics Data System (ADS)

    Marmottant, Philippe

    2012-02-01

    The Equisetum plants, more commonly called ``horsetail,'' emit 50-microns spores that are spherical in shape and present four hygroscopic arms. Under high humidity, the arms are retracted. But under lower humidity, less than 70%, the four arms deploy beautifully. With time-lapse image recordings, we show that under repeated cycles of dry and high humidity, the spores behave as random walkers, since they move by about their size in a different direction at every cycle. The process is apparently stochastic because of the complex shape of the arms and hysteretic friction of the arms on the ground. For some spores, a decrease in humidity level results in very fast jumps, the spores taking off at a typical velocity of a meter per second, as recorded on high-speed camera. With these jumps, they reach centimetric elevations, much larger than their size. The physical mechanism at the root of these ``Levy-flight'' jumps is still under investigation. The walking and jumping phenomena thus provide motility, which we believe is helpful for the understanding of the biological dispersion of the spores. It could also bring biomimetic inspiration to engineer new motile elastic structures.

  17. The Jumping Ring Experiment

    ERIC Educational Resources Information Center

    Baylie, M.; Ford, P. J.; Mathlin, G. P.; Palmer, C.

    2009-01-01

    The jumping ring experiment has become central to liquid nitrogen shows given as part of the outreach and open day activities carried out within the University of Bath. The basic principles of the experiment are described as well as the effect of changing the geometry of the rings and their metallurgical state. In general, aluminium rings are…

  18. Egg Bungee Jump

    ERIC Educational Resources Information Center

    Tretter, Thomas

    2005-01-01

    In the spirit of the National Science Education Standards (NRC 1996), many teachers attempt to have their students experience science in a constructivist, inquiry-oriented manner. The egg bungee jump activity will certainly support that mode of teaching, and has the added benefit of providing a concrete context within which students can explore…

  19. GUIDELINE FOR FLUID MODELING OF ATMOSPHERIC DIFFUSION

    EPA Science Inventory

    The fundamental principles for fluid modeling of flow and dispersion of pollutants in the atmospheric boundary layer are reviewed. The usefulness of fluid models are evaluated from both scientific and engineering viewpoints. Because many detailed decisions must be made during the...

  20. A Combinatorial Model of Malware Diffusion via Bluetooth Connections

    PubMed Central

    Merler, Stefano; Jurman, Giuseppe

    2013-01-01

    We outline here the mathematical expression of a diffusion model for cellphones malware transmitted through Bluetooth channels. In particular, we provide the deterministic formula underlying the proposed infection model, in its equivalent recursive (simple but computationally heavy) and closed form (more complex but efficiently computable) expression. PMID:23555677

  1. An Urban Diffusion Simulation Model for Carbon Monoxide

    ERIC Educational Resources Information Center

    Johnson, W. B.; And Others

    1973-01-01

    A relatively simple Gaussian-type diffusion simulation model for calculating urban carbon (CO) concentrations as a function of local meteorology and the distribution of traffic is described. The model can be used in two ways: in the synoptic mode and in the climatological mode. (Author/BL)

  2. TURBULENT DIFFUSION BEHIND VEHICLES: EXPERIMENTS AND VERIFICATION OF ROADWAY MODELS

    EPA Science Inventory

    Tracer gas was released behind model vehicles in a moving floor wind tunnel and sampled extensively at various downwind distances. A numerical model was used to test various expressions for the eddy diffusion coefficients. The best formulation has been incorporated into the ROADW...

  3. Diffusion approximation for modeling of 3-D radiation distributions

    SciTech Connect

    Zardecki, A.; Gerstl, S.A.W.; De Kinder, R.E. Jr.

    1985-01-01

    A three-dimensional transport code DIF3D, based on the diffusion approximation, is used to model the spatial distribution of radiation energy arising from volumetric isotropic sources. Future work will be concerned with the determination of irradiances and modeling of realistic scenarios, relevant to the battlefield conditions. 8 refs., 4 figs.

  4. A combinatorial model of malware diffusion via bluetooth connections.

    PubMed

    Merler, Stefano; Jurman, Giuseppe

    2013-01-01

    We outline here the mathematical expression of a diffusion model for cellphones malware transmitted through Bluetooth channels. In particular, we provide the deterministic formula underlying the proposed infection model, in its equivalent recursive (simple but computationally heavy) and closed form (more complex but efficiently computable) expression. PMID:23555677

  5. A three-dimensional spin-diffusion model for micromagnetics

    PubMed Central

    Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter

    2015-01-01

    We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation. PMID:26442796

  6. A three-dimensional spin-diffusion model for micromagnetics.

    PubMed

    Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter

    2015-01-01

    We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation. PMID:26442796

  7. A three-dimensional spin-diffusion model for micromagnetics

    NASA Astrophysics Data System (ADS)

    Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter

    2015-10-01

    We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation.

  8. Langevin equation with fluctuating diffusivity: A two-state model

    NASA Astrophysics Data System (ADS)

    Miyaguchi, Tomoshige; Akimoto, Takuma; Yamamoto, Eiji

    2016-07-01

    Recently, anomalous subdiffusion, aging, and scatter of the diffusion coefficient have been reported in many single-particle-tracking experiments, though the origins of these behaviors are still elusive. Here, as a model to describe such phenomena, we investigate a Langevin equation with diffusivity fluctuating between a fast and a slow state. Namely, the diffusivity follows a dichotomous stochastic process. We assume that the sojourn time distributions of these two states are given by power laws. It is shown that, for a nonequilibrium ensemble, the ensemble-averaged mean-square displacement (MSD) shows transient subdiffusion. In contrast, the time-averaged MSD shows normal diffusion, but an effective diffusion coefficient transiently shows aging behavior. The propagator is non-Gaussian for short time and converges to a Gaussian distribution in a long-time limit; this convergence to Gaussian is extremely slow for some parameter values. For equilibrium ensembles, both ensemble-averaged and time-averaged MSDs show only normal diffusion and thus we cannot detect any traces of the fluctuating diffusivity with these MSDs. Therefore, as an alternative approach to characterizing the fluctuating diffusivity, the relative standard deviation (RSD) of the time-averaged MSD is utilized and it is shown that the RSD exhibits slow relaxation as a signature of the long-time correlation in the fluctuating diffusivity. Furthermore, it is shown that the RSD is related to a non-Gaussian parameter of the propagator. To obtain these theoretical results, we develop a two-state renewal theory as an analytical tool.

  9. Langevin equation with fluctuating diffusivity: A two-state model.

    PubMed

    Miyaguchi, Tomoshige; Akimoto, Takuma; Yamamoto, Eiji

    2016-07-01

    Recently, anomalous subdiffusion, aging, and scatter of the diffusion coefficient have been reported in many single-particle-tracking experiments, though the origins of these behaviors are still elusive. Here, as a model to describe such phenomena, we investigate a Langevin equation with diffusivity fluctuating between a fast and a slow state. Namely, the diffusivity follows a dichotomous stochastic process. We assume that the sojourn time distributions of these two states are given by power laws. It is shown that, for a nonequilibrium ensemble, the ensemble-averaged mean-square displacement (MSD) shows transient subdiffusion. In contrast, the time-averaged MSD shows normal diffusion, but an effective diffusion coefficient transiently shows aging behavior. The propagator is non-Gaussian for short time and converges to a Gaussian distribution in a long-time limit; this convergence to Gaussian is extremely slow for some parameter values. For equilibrium ensembles, both ensemble-averaged and time-averaged MSDs show only normal diffusion and thus we cannot detect any traces of the fluctuating diffusivity with these MSDs. Therefore, as an alternative approach to characterizing the fluctuating diffusivity, the relative standard deviation (RSD) of the time-averaged MSD is utilized and it is shown that the RSD exhibits slow relaxation as a signature of the long-time correlation in the fluctuating diffusivity. Furthermore, it is shown that the RSD is related to a non-Gaussian parameter of the propagator. To obtain these theoretical results, we develop a two-state renewal theory as an analytical tool. PMID:27575079

  10. Modeling Copper Diffusion in Polycrystalline CdTe Solar Cells

    SciTech Connect

    Akis, Richard; Brinkman, Daniel; Sankin, Igor; Fang, Tian; Guo, Da; Vasileska, Dragica; Ringhofer, Christain

    2014-06-06

    It is well known that Cu plays an important role in CdTe solar cell performance as a dopant. In this work, a finite-difference method is developed and used to simulate Cu diffusion in CdTe solar cells. In the simulations, which are done on a two-dimensional (2D) domain, the CdTe is assumed to be polycrystalline, with the individual grains separated by grain boundaries. When used to fit experimental Cu concentration data, bulk and grain boundary diffusion coefficients and activation energies for CdTe can be extracted. In the past, diffusion coefficients have been typically obtained by fitting data to simple functional forms of limited validity. By doing full simulations, the simplifying assumptions used in those analytical models are avoided and diffusion parameters can thus be determined more accurately

  11. Numerical modelling of swirling diffusive flames

    NASA Astrophysics Data System (ADS)

    Parra-Santos, Teresa; Perez, Ruben; Szasz, Robert Z.; Gutkowski, Artur N.; Castro, Francisco

    2016-03-01

    Computational Fluid Dynamics has been used to study the mixing and combustion of two confined jets whose setup and operating conditions are those of the benchmark of Roback and Johnson. Numerical model solves 3D transient Navier Stokes for turbulent and reactive flows. Averaged velocity profiles using RNG swirl dominated k-epsilon model have been validated with experimental measurements from other sources for the non reactive case. The combustion model is Probability Density Function. Bearing in mind the annular jet has swirl number over 0.5, a vortex breakdown appears in the axis of the burner. Besides, the sudden expansion with a ratio of 2 in diameter between nozzle exits and the test chamber produces the boundary layer separation with the corresponding torus shape recirculation. Contrasting the mixing and combustion models, the last one produces the reduction of the vortex breakdown.

  12. Modelling on cavitation in a diffuser with vortex generator

    NASA Astrophysics Data System (ADS)

    Jablonská, J.

    2013-04-01

    Based on cavitation modelling in Laval nozzle results and experience, problem with the diffuser with vortex generator was defined. The problem describes unsteady multiphase flow of water. Different cavitation models were used when modelling in Fluent, flow condition is inlet and pressure condition is outlet. Boundary conditions were specified by Energy Institute, Victor Kaplan's Department of Fluid Engineering, Faculty of Mechanical Engineering, Brno University of Technology. Numerical modelling is compared with experiment.

  13. Evaluating the accuracy of diffusion MRI models in white matter.

    PubMed

    Rokem, Ariel; Yeatman, Jason D; Pestilli, Franco; Kay, Kendrick N; Mezer, Aviv; van der Walt, Stefan; Wandell, Brian A

    2015-01-01

    Models of diffusion MRI within a voxel are useful for making inferences about the properties of the tissue and inferring fiber orientation distribution used by tractography algorithms. A useful model must fit the data accurately. However, evaluations of model-accuracy of commonly used models have not been published before. Here, we evaluate model-accuracy of the two main classes of diffusion MRI models. The diffusion tensor model (DTM) summarizes diffusion as a 3-dimensional Gaussian distribution. Sparse fascicle models (SFM) summarize the signal as a sum of signals originating from a collection of fascicles oriented in different directions. We use cross-validation to assess model-accuracy at different gradient amplitudes (b-values) throughout the white matter. Specifically, we fit each model to all the white matter voxels in one data set and then use the model to predict a second, independent data set. This is the first evaluation of model-accuracy of these models. In most of the white matter the DTM predicts the data more accurately than test-retest reliability; SFM model-accuracy is higher than test-retest reliability and also higher than the DTM model-accuracy, particularly for measurements with (a) a b-value above 1000 in locations containing fiber crossings, and (b) in the regions of the brain surrounding the optic radiations. The SFM also has better parameter-validity: it more accurately estimates the fiber orientation distribution function (fODF) in each voxel, which is useful for fiber tracking. PMID:25879933

  14. Evaluating the Accuracy of Diffusion MRI Models in White Matter

    PubMed Central

    Rokem, Ariel; Yeatman, Jason D.; Pestilli, Franco; Kay, Kendrick N.; Mezer, Aviv; van der Walt, Stefan; Wandell, Brian A.

    2015-01-01

    Models of diffusion MRI within a voxel are useful for making inferences about the properties of the tissue and inferring fiber orientation distribution used by tractography algorithms. A useful model must fit the data accurately. However, evaluations of model-accuracy of commonly used models have not been published before. Here, we evaluate model-accuracy of the two main classes of diffusion MRI models. The diffusion tensor model (DTM) summarizes diffusion as a 3-dimensional Gaussian distribution. Sparse fascicle models (SFM) summarize the signal as a sum of signals originating from a collection of fascicles oriented in different directions. We use cross-validation to assess model-accuracy at different gradient amplitudes (b-values) throughout the white matter. Specifically, we fit each model to all the white matter voxels in one data set and then use the model to predict a second, independent data set. This is the first evaluation of model-accuracy of these models. In most of the white matter the DTM predicts the data more accurately than test-retest reliability; SFM model-accuracy is higher than test-retest reliability and also higher than the DTM model-accuracy, particularly for measurements with (a) a b-value above 1000 in locations containing fiber crossings, and (b) in the regions of the brain surrounding the optic radiations. The SFM also has better parameter-validity: it more accurately estimates the fiber orientation distribution function (fODF) in each voxel, which is useful for fiber tracking. PMID:25879933

  15. Hierarchical set of models to estimate soil thermal diffusivity

    NASA Astrophysics Data System (ADS)

    Arkhangelskaya, Tatiana; Lukyashchenko, Ksenia

    2016-04-01

    Soil thermal properties significantly affect the land-atmosphere heat exchange rates. Intra-soil heat fluxes depend both on temperature gradients and soil thermal conductivity. Soil temperature changes due to energy fluxes are determined by soil specific heat. Thermal diffusivity is equal to thermal conductivity divided by volumetric specific heat and reflects both the soil ability to transfer heat and its ability to change temperature when heat is supplied or withdrawn. The higher soil thermal diffusivity is, the thicker is the soil/ground layer in which diurnal and seasonal temperature fluctuations are registered and the smaller are the temperature fluctuations at the soil surface. Thermal diffusivity vs. moisture dependencies for loams, sands and clays of the East European Plain were obtained using the unsteady-state method. Thermal diffusivity of different soils differed greatly, and for a given soil it could vary by 2, 3 or even 5 times depending on soil moisture. The shapes of thermal diffusivity vs. moisture dependencies were different: peak curves were typical for sandy soils and sigmoid curves were typical for loamy and especially for compacted soils. The lowest thermal diffusivities and the smallest range of their variability with soil moisture were obtained for clays with high humus content. Hierarchical set of models will be presented, allowing an estimate of soil thermal diffusivity from available data on soil texture, moisture, bulk density and organic carbon. When developing these models the first step was to parameterize the experimental thermal diffusivity vs. moisture dependencies with a 4-parameter function; the next step was to obtain regression formulas to estimate the function parameters from available data on basic soil properties; the last step was to evaluate the accuracy of suggested models using independent data on soil thermal diffusivity. The simplest models were based on soil bulk density and organic carbon data and provided different

  16. Optimizing the Diffusion Welding Process for Alloy 800H: Thermodynamic, Diffusion Modeling, and Experimental Work

    NASA Astrophysics Data System (ADS)

    Mizia, Ronald E.; Clark, Denis E.; Glazoff, Michael V.; Lister, Tedd E.; Trowbridge, Tammy L.

    2013-01-01

    A research effort was made to evaluate the usefulness of modern thermodynamic and diffusion computational tools, Thermo-Calc and Dictra (Thermo_Calc Software, Inc., McMurray, PA), in optimizing the parameters for diffusion welding of Alloy 800H. This would achieve a substantial reduction in the overall number of experiments required to achieve optimal welding and post-weld heat treatment conditions. This problem is important because diffusion-welded components of Alloy 800H are being evaluated for use in assembling compact, micro-channel heat exchangers that are being proposed in the design of a high-temperature, gas-cooled reactor by the U.S. Department of Energy. The modeling was done in close contact with experimental work. The latter included using the Gleeble 3500 System (Dynamic Systems, Inc., Poestenkill, NY) for welding simulation, mechanical property measurement, and light optical and scanning electron microscopy. The modeling efforts suggested a temperature of 1423 K (1150 °C) for 1 hour with an applied pressure of 5 MPa using a 15- μm Ni foil as joint filler to reduce chromium oxidation on the welded surfaces. Good agreement between modeled and experimentally determined concentration gradients was achieved, and model refinements to account for the complexity of actual alloy materials are suggested.

  17. A multiple mapping conditioning model for differential diffusion

    NASA Astrophysics Data System (ADS)

    Dialameh, L.; Cleary, M. J.; Klimenko, A. Y.

    2014-02-01

    This work introduces modeling of differential diffusion within the multiple mapping conditioning (MMC) turbulent mixing and combustion framework. The effect of differential diffusion on scalar variance decay is analyzed and, following a number of publications, is found to scale as Re-1/2. The ability to model the differential decay rates is the most important aim of practical differential diffusion models, and here this is achieved in MMC by introducing what is called the side-stepping method. The approach is practical and, as it does not involve an increase in the number of MMC reference variables, economical. In addition we also investigate the modeling of a more refined and difficult to reproduce differential diffusion effect - the loss of correlation between the different scalars. For this we develop an alternative MMC model with two reference variables but which also makes use of the side-stepping method. The new models are successfully validated against DNS results available in literature for homogenous, isotropic two scalar mixing.

  18. Models of geochemical systems from mixture theory: diffusion

    SciTech Connect

    Kirwan, A.D. Jr; Kump, L.R.

    1987-05-01

    The problem of diffusion of a geochemical component in a natural environment is investigated from the standpoint of mixture theory. The approach here differs from previous diffusion studies in that both the conservation of mass and momentum for the component is considered. This approach avoids parameterizing the diffusive flux in the mass equation by Fick's law. It is shown that when the momentum equation is included with the mass equation, the linear approximation for the space-time distribution of a solute in a binary system is the telegraph equation, well known from electrodynamics. This contrasts with the diffusion equation, which relies on introducing the Fick's law assumption into the conservation of mass equation for the solute. Solutions for both the diffusion and telegraph equation models are obtained and compared for the case of migration of a minor component into the sea bed when the sediment-water interface concentration is a prescribed function of time. Although the stationary, steady state solutions of the telegraph and diffusion equations are identical, the former has a transient solution in which fluctuations propagate at finite speed. The Fickian assumption, in contrast, requires an infinite speed of propagation.

  19. Evaluation of the Diffusive Equilibrium Models by the IMAGE RPI

    NASA Astrophysics Data System (ADS)

    Ozhogin, Pavel; Reinisch, Bodo W.; Song, Paul; Tu, Jiannan

    2013-04-01

    Using measured field-aligned electron density profiles, this study investigates the validity of the diffusive equilibrium model in Earth's plasmasphere. This model which describes the electron and ion densities along a magnetic field line in the plasmasphere has been widely used for ray tracing and pitch-angle scattering calculations. It is based on the hydrostatic equilibrium with the electrostatic force that acts on ions and electrons along geomagnetic field lines while actually there is no motion or diffusion of the plasma involved. The model requires multiple input parameters: electron density and ion composition (H+, He+, O+) at a base level for a magnetic field line in the ionosphere, and the (electron or ion) temperature in the plasmasphere. It has been recognized that these input parameters have to be flexible from one field line to another so that the model output does not contradict some known observed relationships. However, while the flexibility provides the possibility to fit any individual observed density distribution which is measured across many different field lines, the model prediction becomes questionable along a single field line. Before the launch of the IMAGE satellite in 2000 no plasma density measurements along a single field line were available, and therefore the validity of the diffusive equilibrium models had not been independently verified. Our qualitative and quantitative analysis shows that the fundamental functional form of the diffusive equilibrium model is inconsistent with the large database of field-aligned electron density distributions obtained by the radio plasma imager (RPI) instrument onboard the IMAGE satellite. Review of the procedures used in the derivation of the original diffusive equilibrium model suggests that the physical processes described by the mathematical procedures are fundamentally incorrect.

  20. A Mathematical Model of Diffusion-Limited Gas Bubble Dynamics in Tissue with Varying Diffusion Region Thickness

    NASA Technical Reports Server (NTRS)

    Srinivasan, R. Srini; Gerth, Wayne A.; Powell, Michael R.; Paloski, William H. (Technical Monitor)

    2000-01-01

    A three-region mathematical model of gas bubble dynamics has been shown suitable for describing diffusion-limited dynamics of more than one bubble in a given volume of extravascular tissue. The model is based on the dynamics of gas exchange between a bubble and a well-stirred tissue region through an intervening unperfused diffusion region previously assumed to have constant thickness and uniform gas diffusivity. As a result, the gas content of the diffusion region remains constant as the volume of the region increases with bubble growth, causing dissolved gas in the region to violate Henry's law. Earlier work also neglected the relationship between the varying diffusion region volume and the fixed total tissue volume, because only cases in which the diffusion region volume is a small fraction of the overall tissue volume were considered. We herein extend the three-region model to correct these theoretical inconsistencies by allowing both the thickness and gas content of the diffusion region to vary during bubble evolution. A postulated difference in gas diffusivity between an infinitesimally thin layer at the bubble surface and the remainder of the diffusion region leads to variation in diffusion region gas content and thickness during bubble growth and resolution. This variable thickness, differential diffusivity (VTDD) model can yield bubble lifetimes considerably longer than those yielded by earlier three-region models for given model and decompression parameters, and meets a need for theoretically consistent but relatively simple bubble dynamics models for use in studies of decompression sickness (DCS) in human subjects, Keywords: decompression sickness, gas diffusion in tissue, diffusivity

  1. A Microscopic Model for Diffusion of a Polymer Chain in the Entangled Regime

    NASA Astrophysics Data System (ADS)

    Canpolat, Murat; Erzan, Ayþe; Pekcan, Önder

    1997-01-01

    In the entangled regime the reptation concept [1,2] is the most successful in describing the dynamical behavior of a single chain. Using scaling concepts some quantities such as translational diffussion coefficient for the polymer center of mass Dtr, and renewal time {t} [3] have been calculated in the reptation model. This model is used for representing the low-frequency motions of a polymer molecule in a fluid of entangled chains, neglecting rapid relaxation processes that are attributed to local conformal transitions of backbone. Helfand and collabrators have studied the kinetics of conformational transitions in chain molecules, and they find that single-bond rotations followed by the compensating rearrangement of neigboring units are predominantly responsible for local motions [4]. Such models have also been considered by Erman and co-workers [5]. The purpose of this study to understand reptation at a microscopic level. We consedir rapid relaxation processes, that are singlet- or double -bond rotations; motion along the contour of the chain is due to displacments caused by rearangements of the neighboring units. We recover the usual scaling behavior of the diffusion coefficients and relaxation times with the chain mass. Moreover, the effective activation energy that is found from the local jump model for translational motion of the chain center of mass compares favorably with experiment and is independent of the molecular weight for large enough chains [6]. We are also able to account for the apparent temperature of this "activation energy".

  2. Jump with Jill

    ERIC Educational Resources Information Center

    Henderson, Nancy

    2010-01-01

    This article profiles Jill Jayne, who was working as a registered nutritionist in the New York City public school system when she was assigned to a group of 25 urban students in an after-school program in East Harlem. In the spring of 2006, Jayne took her "Jump With Jill" show to the streets outside Central Park, collected tips in a tin pot and,…

  3. MAST-2D diffusive model for flood prediction on domains with triangular Delaunay unstructured meshes

    NASA Astrophysics Data System (ADS)

    Aricò, C.; Sinagra, M.; Begnudelli, L.; Tucciarelli, T.

    2011-11-01

    A new methodology for the solution of the 2D diffusive shallow water equations over Delaunay unstructured triangular meshes is presented. Before developing the new algorithm, the following question is addressed: it is worth developing and using a simplified shallow water model, when well established algorithms for the solution of the complete one do exist? The governing Partial Differential Equations are discretized using a procedure similar to the linear conforming Finite Element Galerkin scheme, with a different flux formulation and a special flux treatment that requires Delaunay triangulation but entire solution monotonicity. A simple mesh adjustment is suggested, that attains the Delaunay condition for all the triangle sides without changing the original nodes location and also maintains the internal boundaries. The original governing system is solved applying a fractional time step procedure, that solves consecutively a convective prediction system and a diffusive correction system. The non linear components of the problem are concentrated in the prediction step, while the correction step leads to the solution of a linear system of the order of the number of computational cells. A semi-analytical procedure is applied for the solution of the prediction step. The discretized formulation of the governing equations allows to handle also wetting and drying processes without any additional specific treatment. Local energy dissipations, mainly the effect of vertical walls and hydraulic jumps, can be easily included in the model. Several numerical experiments have been carried out in order to test (1) the stability of the proposed model with regard to the size of the Courant number and to the mesh irregularity, (2) its computational performance, (3) the convergence order by means of mesh refinement. The model results are also compared with the results obtained by a fully dynamic model. Finally, the application to a real field case with a Venturi channel is presented.

  4. Computer modelling of nanoscale diffusion phenomena at epitaxial interfaces

    NASA Astrophysics Data System (ADS)

    Michailov, M.; Ranguelov, B.

    2014-05-01

    The present study outlines an important area in the application of computer modelling to interface phenomena. Being relevant to the fundamental physical problem of competing atomic interactions in systems with reduced dimensionality, these phenomena attract special academic attention. On the other hand, from a technological point of view, detailed knowledge of the fine atomic structure of surfaces and interfaces correlates with a large number of practical problems in materials science. Typical examples are formation of nanoscale surface patterns, two-dimensional superlattices, atomic intermixing at an epitaxial interface, atomic transport phenomena, structure and stability of quantum wires on surfaces. We discuss here a variety of diffusion mechanisms that control surface-confined atomic exchange, formation of alloyed atomic stripes and islands, relaxation of pure and alloyed atomic terraces, diffusion of clusters and their stability in an external field. The computational model refines important details of diffusion of adatoms and clusters accounting for the energy barriers at specific atomic sites: smooth domains, terraces, steps and kinks. The diffusion kinetics, integrity and decomposition of atomic islands in an external field are considered in detail and assigned to specific energy regions depending on the cluster stability in mass transport processes. The presented ensemble of diffusion scenarios opens a way for nanoscale surface design towards regular atomic interface patterns with exotic physical features.

  5. GIS-BASED 1-D DIFFUSIVE WAVE OVERLAND FLOW MODEL

    SciTech Connect

    KALYANAPU, ALFRED; MCPHERSON, TIMOTHY N.; BURIAN, STEVEN J.

    2007-01-17

    This paper presents a GIS-based 1-d distributed overland flow model and summarizes an application to simulate a flood event. The model estimates infiltration using the Green-Ampt approach and routes excess rainfall using the 1-d diffusive wave approximation. The model was designed to use readily available topographic, soils, and land use/land cover data and rainfall predictions from a meteorological model. An assessment of model performance was performed for a small catchment and a large watershed, both in urban environments. Simulated runoff hydrographs were compared to observations for a selected set of validation events. Results confirmed the model provides reasonable predictions in a short period of time.

  6. Accelerating population balance-Monte Carlo simulation for coagulation dynamics from the Markov jump model, stochastic algorithm and GPU parallel computing

    NASA Astrophysics Data System (ADS)

    Xu, Zuwei; Zhao, Haibo; Zheng, Chuguang

    2015-01-01

    This paper proposes a comprehensive framework for accelerating population balance-Monte Carlo (PBMC) simulation of particle coagulation dynamics. By combining Markov jump model, weighted majorant kernel and GPU (graphics processing unit) parallel computing, a significant gain in computational efficiency is achieved. The Markov jump model constructs a coagulation-rule matrix of differentially-weighted simulation particles, so as to capture the time evolution of particle size distribution with low statistical noise over the full size range and as far as possible to reduce the number of time loopings. Here three coagulation rules are highlighted and it is found that constructing appropriate coagulation rule provides a route to attain the compromise between accuracy and cost of PBMC methods. Further, in order to avoid double looping over all simulation particles when considering the two-particle events (typically, particle coagulation), the weighted majorant kernel is introduced to estimate the maximum coagulation rates being used for acceptance-rejection processes by single-looping over all particles, and meanwhile the mean time-step of coagulation event is estimated by summing the coagulation kernels of rejected and accepted particle pairs. The computational load of these fast differentially-weighted PBMC simulations (based on the Markov jump model) is reduced greatly to be proportional to the number of simulation particles in a zero-dimensional system (single cell). Finally, for a spatially inhomogeneous multi-dimensional (multi-cell) simulation, the proposed fast PBMC is performed in each cell, and multiple cells are parallel processed by multi-cores on a GPU that can implement the massively threaded data-parallel tasks to obtain remarkable speedup ratio (comparing with CPU computation, the speedup ratio of GPU parallel computing is as high as 200 in a case of 100 cells with 10 000 simulation particles per cell). These accelerating approaches of PBMC are

  7. Accelerating population balance-Monte Carlo simulation for coagulation dynamics from the Markov jump model, stochastic algorithm and GPU parallel computing

    SciTech Connect

    Xu, Zuwei; Zhao, Haibo Zheng, Chuguang

    2015-01-15

    This paper proposes a comprehensive framework for accelerating population balance-Monte Carlo (PBMC) simulation of particle coagulation dynamics. By combining Markov jump model, weighted majorant kernel and GPU (graphics processing unit) parallel computing, a significant gain in computational efficiency is achieved. The Markov jump model constructs a coagulation-rule matrix of differentially-weighted simulation particles, so as to capture the time evolution of particle size distribution with low statistical noise over the full size range and as far as possible to reduce the number of time loopings. Here three coagulation rules are highlighted and it is found that constructing appropriate coagulation rule provides a route to attain the compromise between accuracy and cost of PBMC methods. Further, in order to avoid double looping over all simulation particles when considering the two-particle events (typically, particle coagulation), the weighted majorant kernel is introduced to estimate the maximum coagulation rates being used for acceptance–rejection processes by single-looping over all particles, and meanwhile the mean time-step of coagulation event is estimated by summing the coagulation kernels of rejected and accepted particle pairs. The computational load of these fast differentially-weighted PBMC simulations (based on the Markov jump model) is reduced greatly to be proportional to the number of simulation particles in a zero-dimensional system (single cell). Finally, for a spatially inhomogeneous multi-dimensional (multi-cell) simulation, the proposed fast PBMC is performed in each cell, and multiple cells are parallel processed by multi-cores on a GPU that can implement the massively threaded data-parallel tasks to obtain remarkable speedup ratio (comparing with CPU computation, the speedup ratio of GPU parallel computing is as high as 200 in a case of 100 cells with 10 000 simulation particles per cell). These accelerating approaches of PBMC are

  8. Turing instability in reaction-diffusion models on complex networks

    NASA Astrophysics Data System (ADS)

    Ide, Yusuke; Izuhara, Hirofumi; Machida, Takuya

    2016-09-01

    In this paper, the Turing instability in reaction-diffusion models defined on complex networks is studied. Here, we focus on three types of models which generate complex networks, i.e. the Erdős-Rényi, the Watts-Strogatz, and the threshold network models. From analysis of the Laplacian matrices of graphs generated by these models, we numerically reveal that stable and unstable regions of a homogeneous steady state on the parameter space of two diffusion coefficients completely differ, depending on the network architecture. In addition, we theoretically discuss the stable and unstable regions in the cases of regular enhanced ring lattices which include regular circles, and networks generated by the threshold network model when the number of vertices is large enough.

  9. Effects of Microscopic Diffusion and Rotational Mixing on Stellar Models

    NASA Astrophysics Data System (ADS)

    Chaboyer, Brian

    1994-02-01

    Evolutionary tracks and isochrones were calculated with alpha-enhanced compositions which cover the entire globular cluster metallicity range and include the effects of the diffusion of ^4He. Including the effects of helium diffusion has a negligible effect (< 0.5 Gyr) on the derived ages of globular clusters. Regardless of the inclusion of helium diffusion, a significant age spread of ~5$ Gyr exists among the globular clusters. The oldest globular cluster studied was M92 with an age of 17 +/- 2 Gyr old. The stellar models may be tested by comparing the Li depletion and surface rotation rates to observations in young clusters stars. The observed Li abundances clearly indicate that standard or diffusive models do not deplete enough Li. Instabilities induced by rotation provide an additional mixing mechanism. For this reason the stellar evolution code was modified to include the combined effects of diffusion and rotational mixing on ^1H, ^4He and the trace elements ^3He, ^6Li, ^7Li, and ^9Be. The calibrated solar models have a convection zone depth of 0.709 - 0.714~R_odot, in excellent agreement with the observed depth of (0.713 +/- 0.003)~R_odot. The rotational mixing inhibits the diffusion in the outer parts of the models, leading to a decrease in the envelope diffusion by 30 - 50%. The combined models are able to simultaneously match the Li abundances observed in the Pleiades, UMaG, Hyades, NGC 752 and M67. They also match the observed rotation periods in the Hyades. However, these models are unable to explain the presence of the rapidly rotating G and K stars in the Pleiades. Observations of Li abundances in extremely metal poor halo stars provide another test of the stellar models. All models which use Kurucz (1992) model atmospheres to determine the surface boundary conditions are unable to match the observed Li depletion in cool halo stars. Models which use the gray atmosphere approximation provide a much better fit to the data. Standard models do a good job

  10. Final Report - Experiments and Models for Chemical Diffusion in Silicate Melts

    SciTech Connect

    Richter, Frank

    1999-10-01

    The final report describes experimental measurements of chemical diffusion and self-diffusion in silicate melts. The data are then used to validate a theoretical model for calculating the diffusion matrix of non-ideal liquids.

  11. A Mixed-Culture Biofilm Model with Cross-Diffusion.

    PubMed

    Rahman, Kazi A; Sudarsan, Rangarajan; Eberl, Hermann J

    2015-11-01

    We propose a deterministic continuum model for mixed-culture biofilms. A crucial aspect is that movement of one species is affected by the presence of the other. This leads to a degenerate cross-diffusion system that generalizes an earlier single-species biofilm model. Two derivations of this new model are given. One, like cellular automata biofilm models, starts from a discrete in space lattice differential equation where the spatial interaction is described by microscopic rules. The other one starts from the same continuous mass balances that are the basis of other deterministic biofilm models, but it gives up a simplifying assumption of these models that has recently been criticized as being too restrictive in terms of ecological structure. We show that both model derivations lead to the same PDE model, if corresponding closure assumptions are introduced. To investigate the role of cross-diffusion, we conduct numerical simulations of three biofilm systems: competition, allelopathy and a mixed system formed by an aerobic and an anaerobic species. In all cases, we find that accounting for cross-diffusion affects local distribution of biomass, but it does not affect overall lumped quantities such as the total amount of biomass in the system. PMID:26582360

  12. Modeling intragranular diffusion in low-connectivity granular media

    NASA Astrophysics Data System (ADS)

    Ewing, Robert P.; Liu, Chongxuan; Hu, Qinhong

    2012-03-01

    Characterizing the diffusive exchange of solutes between bulk water in an aquifer and water in the intragranular pores of the solid phase is still challenging despite decades of study. Many disparities between observation and theory could be attributed to low connectivity of the intragranular pores. The presence of low connectivity indicates that a useful conceptual framework is percolation theory. The present study was initiated to develop a percolation-based finite difference (FD) model, and to test it rigorously against both random walk (RW) simulations of diffusion starting from nonequilibrium, and data on Borden sand published by Ball and Roberts (1991a,b) and subsequently reanalyzed by Haggerty and Gorelick (1995) using a multirate mass transfer (MRMT) approach. The percolation-theoretical model is simple and readily incorporated into existing FD models. The FD model closely matches the RW results using only a single fitting parameter, across a wide range of pore connectivities. Simulation of the Borden sand experiment without pore connectivity effects reproduced the MRMT analysis, but including low pore connectivity effects improved the fit. Overall, the theory and simulation results show that low intragranular pore connectivity can produce diffusive behavior that appears as if the solute had undergone slow sorption, despite the absence of any sorption process, thereby explaining some hitherto confusing aspects of intragranular diffusion.

  13. Modeling development of inhibition zones in an agar diffusion bioassay.

    PubMed

    Chandrasekar, Vaishnavi; Knabel, Stephen J; Anantheswaran, Ramaswamy C

    2015-09-01

    A two-temperature agar diffusion bioassay is commonly used to quantify the concentration of nisin using Micrococcus luteus as the indicator microorganism. A finite element computational model based on Fick's second law of diffusion was used to predict the radius of the inhibition zone in this diffusion bioassay. The model developed was used to calculate nisin concentration profiles as a function of time and position within the agar. The minimum inhibitory concentration (MIC) of nisin against M. luteus was determined experimentally. The critical time (T c) for growth of M. luteus within the agar diffusion bioassay was experimentally determined using incubation studies with nisin. The radius of the inhibition zone was predicted from the computational model as the location where the predicted nisin concentration at T c was equal to MIC. The MIC was experimentally determined to be 0.156 μg mL(-1), and T c was determined to be 7 h. Good agreement (R (2) = 0.984) was obtained between model-predicted and experimentally determined inhibition zone radii. PMID:26405525

  14. Reaction Diffusion Modeling of Calcium Dynamics with Realistic ER Geometry

    PubMed Central

    Means, Shawn; Smith, Alexander J.; Shepherd, Jason; Shadid, John; Fowler, John; Wojcikiewicz, Richard J. H.; Mazel, Tomas; Smith, Gregory D.; Wilson, Bridget S.

    2006-01-01

    We describe a finite-element model of mast cell calcium dynamics that incorporates the endoplasmic reticulum's complex geometry. The model is built upon a three-dimensional reconstruction of the endoplasmic reticulum (ER) from an electron tomographic tilt series. Tetrahedral meshes provide volumetric representations of the ER lumen, ER membrane, cytoplasm, and plasma membrane. The reaction-diffusion model simultaneously tracks changes in cytoplasmic and ER intraluminal calcium concentrations and includes luminal and cytoplasmic protein buffers. Transport fluxes via PMCA, SERCA, ER leakage, and Type II IP3 receptors are also represented. Unique features of the model include stochastic behavior of IP3 receptor calcium channels and comparisons of channel open times when diffusely distributed or aggregated in clusters on the ER surface. Simulations show that IP3R channels in close proximity modulate activity of their neighbors through local Ca2+ feedback effects. Cytoplasmic calcium levels rise higher, and ER luminal calcium concentrations drop lower, after IP3-mediated release from receptors in the diffuse configuration. Simulation results also suggest that the buffering capacity of the ER, and not restricted diffusion, is the predominant factor influencing average luminal calcium concentrations. PMID:16617072

  15. Modeling development of inhibition zones in an agar diffusion bioassay

    PubMed Central

    Chandrasekar, Vaishnavi; Knabel, Stephen J; Anantheswaran, Ramaswamy C

    2015-01-01

    A two-temperature agar diffusion bioassay is commonly used to quantify the concentration of nisin using Micrococcus luteus as the indicator microorganism. A finite element computational model based on Fick's second law of diffusion was used to predict the radius of the inhibition zone in this diffusion bioassay. The model developed was used to calculate nisin concentration profiles as a function of time and position within the agar. The minimum inhibitory concentration (MIC) of nisin against M. luteus was determined experimentally. The critical time (Tc) for growth of M. luteus within the agar diffusion bioassay was experimentally determined using incubation studies with nisin. The radius of the inhibition zone was predicted from the computational model as the location where the predicted nisin concentration at Tc was equal to MIC. The MIC was experimentally determined to be 0.156 μg mL−1, and Tc was determined to be 7 h. Good agreement (R2 = 0.984) was obtained between model-predicted and experimentally determined inhibition zone radii. PMID:26405525

  16. ANALYTICAL DIFFUSION MODEL FOR LONG DISTANCE TRANSPORT OF AIR POLLUTANTS

    EPA Science Inventory

    A steady-state two-dimensional diffusion model suitable for predicting ambient air pollutant concentrations averaged over a long time period (e.g., month, season, or year) and resulting from the transport of pollutants for distances greater than about 100 km from the source is de...

  17. Decomposing Task-Switching Costs with the Diffusion Model

    ERIC Educational Resources Information Center

    Schmitz, Florian; Voss, Andreas

    2012-01-01

    In four experiments, task-switching processes were investigated with variants of the alternating runs paradigm and the explicit cueing paradigm. The classical diffusion model for binary decisions (Ratcliff, 1978) was used to dissociate different components of task-switching costs. Findings can be reconciled with the view that task-switching…

  18. User's Manual for the APRAC-1A Urban Diffusion Model Computer Program.

    ERIC Educational Resources Information Center

    Mancuso, R. L.; And Others

    The APRAC-1A diffusion model was developed as a versatile and practical model for computing the concentrations of pollutants at any point within a city. The model calculates pollutant contributions from diffusion on various scales, including: extra-urban diffusion, mainly from sources in upwind cities; intra-urban diffusion from freeway, arterial,…

  19. Auto-stratification in drying colloidal dispersions: a diffusive model.

    PubMed

    Trueman, R E; Lago Domingues, E; Emmett, S N; Murray, M W; Routh, A F

    2012-07-01

    The mechanism by which the particles in a drying film come into close packing during solvent evaporation has an important role to play in the final film morphology. During drying the particles can develop non-uniform concentrations across the vertical height of the film, depending on their diffusion rate. By applying the principles of classical diffusion mechanics to a hard sphere system, a theory for this novel method of stratification during drying of a two component film has been derived. The model is dependent on the particle Peclet numbers and when one is above unity and the other below, maximum stratification is observed. PMID:22503626

  20. Modeling the diffusion of phosphorus in silicon in 3-D

    SciTech Connect

    Baker, K.R.

    1994-12-31

    The use of matrix preconditioning in semiconductor process simulation is examined. The simplified nonlinear single-species model for the diffusion of phosphorus into silicon is considered. The experimental three-dimensional simulator, PEPPER3, which uses finite differences and the numerical method of lines to implement the reaction-diffusion equation is modified to allow NSPCG to be called to solve the linear system in the inner Newton loop. Use of NSPCG allowed various accelerators such as Generalized Minimal Residual (GMRES) and Conjugate Gradient (CG) to be used in conjunction with preconditioners such as Richardson, Jacobi, and Incomplete Cholesky.

  1. Reaction-diffusion modelling of bacterial colony patterns

    NASA Astrophysics Data System (ADS)

    Mimura, Masayasu; Sakaguchi, Hideo; Matsushita, Mitsugu

    2000-07-01

    It is well known from experiments that bacterial species Bacillus subtilis exhibit various colony patterns. These are essentially classified into five types in the morphological diagram, depending on the substrate softness and nutrient concentration. (A) diffusion-limited aggregation-like; (B) Eden-like; (C) concentric ring-like; (D) disk-like; and (E) dense branching morphology-like. There arises the naive question of whether the diversity of colony patterns observed in experiments is caused by different effects or governed by the same underlying principles. Our research has led us to propose reaction-diffusion models to describe the morphological diversity of colony patterns except for Eden-like ones.

  2. DC-Powered Jumping Ring

    ERIC Educational Resources Information Center

    Jeffery, Rondo N.; Farhang, Amiri

    2016-01-01

    The classroom jumping ring demonstration is nearly always performed using alternating current (AC), in which the ring jumps or flies off the extended iron core when the switch is closed. The ring jumps higher when cooled with liquid nitrogen (LN2). We have performed experiments using DC to power the solenoid and find similarities and significant…

  3. Modelling of the pressure-velocity correlation in turbulence diffusion

    NASA Astrophysics Data System (ADS)

    Fu, Song

    1993-05-01

    In the context of second-moment closure, the mechanism of turbulence diffusion consists of mainly two parts: a triple velocity correlation and a pressure-velocity correlation. The first correlation is measurable and can be analyzed theoretically through its transport equation. The second correlation cannot, however, be obtained directly from experiments and knowledge about it is comparatively limited. Most current computations of turbulent flows adopt diffusion models which neglect the effect of the pressure-velocity correlation in the diffusion process. The importance of this correlation effect is elucidated; the neglect of this effect constitutes some of the major defects in the application of the second-moment closures. Through the relation between the two correlations, established by Lumley (1978), we propose a new type of turbulence diffusion model which takes into account the pressure effect. Application of this new model in the computation of the turbulence shearless mixing layer and plane- and round-jet flows shows that the spreading rates of these flows can be captured satisfactorily.

  4. Transport Corrections in Nodal Diffusion Codes for HTR Modeling

    SciTech Connect

    Abderrafi M. Ougouag; Frederick N. Gleicher

    2010-08-01

    The cores and reflectors of High Temperature Reactors (HTRs) of the Next Generation Nuclear Plant (NGNP) type are dominantly diffusive media from the point of view of behavior of the neutrons and their migration between the various structures of the reactor. This means that neutron diffusion theory is sufficient for modeling most features of such reactors and transport theory may not be needed for most applications. Of course, the above statement assumes the availability of homogenized diffusion theory data. The statement is true for most situations but not all. Two features of NGNP-type HTRs require that the diffusion theory-based solution be corrected for local transport effects. These two cases are the treatment of burnable poisons (BP) in the case of the prismatic block reactors and, for both pebble bed reactor (PBR) and prismatic block reactor (PMR) designs, that of control rods (CR) embedded in non-multiplying regions near the interface between fueled zones and said non-multiplying zones. The need for transport correction arises because diffusion theory-based solutions appear not to provide sufficient fidelity in these situations.

  5. Atomic scale modeling of boron transient diffusion in silicon

    SciTech Connect

    Caturla, M. J.; Diaz de la Rubia, T.; Foad, M.; Giles, M.; Johnson, M. D.; Law, M.; Lilak, A.

    1998-06-17

    We presents results from a predictive atomic level simulation of Boron diffusion in Silicon under a wide variety of implant and annealing conditions. The parameters for this simulation have been extracted from first principle approximation models and molecular dynamics simulations. The results are compared with experiments showing good agreement in all cases. The parameters and reactions used have been implemented into a continuum-level model simulator.

  6. Fitting degradation of shoreline scarps by a nonlinear diffusion model

    USGS Publications Warehouse

    Andrews, D.J.; Buckna, R.C.

    1987-01-01

    The diffusion model of degradation of topographic features is a promising means by which vertical offsets on Holocene faults might be dated. In order to calibrate the method, we have examined present-day profiles of wave-cut shoreline scarps of late Pleistocene lakes Bonneville and Lahontan. A table is included that allows easy application of the model to scarps with simple initial shape. -from Authors

  7. Study of a simple model for the transition between the ballistic and the diffusive regimes in diffusive media

    NASA Astrophysics Data System (ADS)

    Ben, Igor; Layosh, Yonatan Y.; Granot, Er'el

    2016-06-01

    A Monte Carlo simulation was utilized to investigate a simple model for the transition between the ballistic and the diffusive regimes in diffusive media. The simulation focuses on the propagation of visible and near-infrared light in biological tissues. This research has mainly two findings: (1) the transition can be described, as was found experimentally, with good accuracy by only two terms (ballistic and diffusive). (2) The model can be utilized for cases where the absorption coefficient is not negligible compared to the scattering coefficient by adding a power-law prefactor to the diffusive term.

  8. Particle jumps in structural glasses.

    PubMed

    Ciamarra, Massimo Pica; Pastore, Raffaele; Coniglio, Antonio

    2016-01-14

    Particles in structural glasses rattle around temporary equilibrium positions, that seldom change through a process which is much faster than the relaxation time, known as particle jump. Since the relaxation of the system is due to the accumulation of many such jumps, it could be possible to connect the single particle short time motion to the macroscopic relaxation by understanding the features of the jump dynamics. Here we review recent results in this research direction, clarifying the features of particle jumps that have been understood and those that are still under investigation, and examining the role of particle jumps in different theories of the glass transition. PMID:26481331

  9. Modeling aerosol formation in opposed-flow diffusion flames.

    PubMed

    Violi, Angela; D'Anna, Andrea; D'Alessio, Antonio; Sarofim, Adel F

    2003-06-01

    The microstructures of atmospheric pressure, counter-flow, sooting, flat, laminar ethylene diffusion flames have been studied numerically by using a new kinetic model developed for hydrocarbon oxidation and pyrolysis. Modeling results are in reasonable agreement with experimental data in terms of concentration profiles of stable species and gas-phase aromatic compounds. Modeling results are used to analyze the controlling steps of aromatic formation and soot growth in counter-flow configurations. The formation of high molecular mass aromatics in diffusion controlled conditions is restricted to a narrow area close to the flame front where these species reach a molecular weight of about 1000 u. Depending on the flame configuration, soot formation is controlled by the coagulation of nanoparticles or by the addition of PAH to soot nuclei. PMID:12718969

  10. A model of the diffuse galactic gamma ray emission

    NASA Technical Reports Server (NTRS)

    Sreekumar, Parameswaran

    1990-01-01

    The galaxy was observed to be a source of high energy gamma rays as shown by the two successful satellite experiments, SAS-2 and COS-B. It is generally understood that these diffuse gamma rays result from interactions between energetic cosmic rays and interstellar gas. This work makes use of the most recent data on the distribution of atomic and molecular hydrogen in the galaxy along with new estimates of gamma ray production functions to model the diffuse galactic gamma ray emission. The model allows various spatial distributions for cosmic rays in the Galaxy including non-axisymmetric ones. In the light of the expected data from EGRET (Energetic Gamma-Ray Experiment Telescope), an improved model of cosmic ray-matter-gamma ray interaction will provide new insights into the distribution of cosmic rays and the strength of its coupling to matter.

  11. Numerical modelling and image reconstruction in diffuse optical tomography

    PubMed Central

    Dehghani, Hamid; Srinivasan, Subhadra; Pogue, Brian W.; Gibson, Adam

    2009-01-01

    The development of diffuse optical tomography as a functional imaging modality has relied largely on the use of model-based image reconstruction. The recovery of optical parameters from boundary measurements of light propagation within tissue is inherently a difficult one, because the problem is nonlinear, ill-posed and ill-conditioned. Additionally, although the measured near-infrared signals of light transmission through tissue provide high imaging contrast, the reconstructed images suffer from poor spatial resolution due to the diffuse propagation of light in biological tissue. The application of model-based image reconstruction is reviewed in this paper, together with a numerical modelling approach to light propagation in tissue as well as generalized image reconstruction using boundary data. A comprehensive review and details of the basis for using spatial and structural prior information are also discussed, whereby the use of spectral and dual-modality systems can improve contrast and spatial resolution. PMID:19581256

  12. Assessment of a Molecular Diffusion Model in MELCOR

    SciTech Connect

    Chang OH; Richard Moore

    2005-06-01

    The MELCOR (version 1.8.5) [1] computer code with INEEL revisions is being improved for the analysis of very high temperature gas-cooled reactors [2]. Following a loss-of-coolant accident, flow through the reactor vessel may initially stagnate due to a non-uniform concentration of helium and air. However, molecular diffusion will eventually result in a uniform concentration of air and helium. The differences in fluid temperatures within the reactor vessel will then result in the establishment of a natural circulation flow that can supply significant amounts of air to the reactor core. The heat released by the resulting oxidation of graphite in the reactor core has the potential to increase the peak fuel temperature. In order to analyze the effects of oxidation on the response of the reactor during accidents, a molecular diffusion model was added to MELCOR. The model is based on Fick's Second Law for spatially uniform pressure and temperature. This paper describes equimolal counter diffusion experiments in a two bulb diffusion cell and the results of the assessment calculations.

  13. Cauchy graph embedding based diffusion model for salient object detection.

    PubMed

    Tan, Yihua; Li, Yansheng; Chen, Chen; Yu, Jin-Gang; Tian, Jinwen

    2016-05-01

    Salient object detection has been a rather hot research topic recently, due to its potential applications in image compression, scene classification, image registration, and so forth. The overwhelming majority of existing computational models are designed based on computer vision techniques by using lots of image cues and priors. Actually, salient object detection is derived from the biological perceptual mechanism, and biological evidence shows that the spread of the spatial attention generates the object attention. Inspired by this, we attempt to utilize the emerging spread mechanism of object attention to construct a new computational model. A novel Cauchy graph embedding based diffusion (CGED) model is proposed to fulfill the spread process. Combining the diffusion model and attention prediction model, a salient object detection approach is presented through perceptually grouping the multiscale diffused attention maps. The effectiveness of the proposed approach is validated on the salient object dataset. The experimental results show that the CGED process can obviously improve the performance of salient object detection compared with the input spatial attention map, and the proposed approach can achieve performance comparable to that of state-of-the-art approaches. PMID:27140886

  14. Coupling volume-excluding compartment-based models of diffusion at different scales: Voronoi and pseudo-compartment approaches.

    PubMed

    Taylor, P R; Baker, R E; Simpson, M J; Yates, C A

    2016-07-01

    Numerous processes across both the physical and biological sciences are driven by diffusion. Partial differential equations are a popular tool for modelling such phenomena deterministically, but it is often necessary to use stochastic models to accurately capture the behaviour of a system, especially when the number of diffusing particles is low. The stochastic models we consider in this paper are 'compartment-based': the domain is discretized into compartments, and particles can jump between these compartments. Volume-excluding effects (crowding) can be incorporated by blocking movement with some probability. Recent work has established the connection between fine- and coarse-grained models incorporating volume exclusion, but only for uniform lattices. In this paper, we consider non-uniform, hybrid lattices that incorporate both fine- and coarse-grained regions, and present two different approaches to describe the interface of the regions. We test both techniques in a range of scenarios to establish their accuracy, benchmarking against fine-grained models, and show that the hybrid models developed in this paper can be significantly faster to simulate than the fine-grained models in certain situations and are at least as fast otherwise. PMID:27383421

  15. Characterization and modeling of thermal diffusion and aggregation in nanofluids.

    SciTech Connect

    Gharagozloo, Patricia E.; Goodson, Kenneth E.

    2010-05-01

    Fluids with higher thermal conductivities are sought for fluidic cooling systems in applications including microprocessors and high-power lasers. By adding high thermal conductivity nanoscale metal and metal oxide particles to a fluid the thermal conductivity of the fluid is enhanced. While particle aggregates play a central role in recent models for the thermal conductivity of nanofluids, the effect of particle diffusion in a temperature field on the aggregation and transport has yet to be studied in depth. The present work separates the effects of particle aggregation and diffusion using parallel plate experiments, infrared microscopy, light scattering, Monte Carlo simulations, and rate equations for particle and heat transport in a well dispersed nanofluid. Experimental data show non-uniform temporal increases in thermal conductivity above effective medium theory and can be well described through simulation of the combination of particle aggregation and diffusion. The simulation shows large concentration distributions due to thermal diffusion causing variations in aggregation, thermal conductivity and viscosity. Static light scattering shows aggregates form more quickly at higher concentrations and temperatures, which explains the increased enhancement with temperature reported by other research groups. The permanent aggregates in the nanofluid are found to have a fractal dimension of 2.4 and the aggregate formations that grow over time are found to have a fractal dimension of 1.8, which is consistent with diffusion limited aggregation. Calculations show as aggregates grow the viscosity increases at a faster rate than thermal conductivity making the highly aggregated nanofluids unfavorable, especially at the low fractal dimension of 1.8. An optimum nanoparticle diameter for these particular fluid properties is calculated to be 130 nm to optimize the fluid stability by reducing settling, thermal diffusion and aggregation.

  16. Exploring Lightning Jump Characteristics

    NASA Technical Reports Server (NTRS)

    Chronis, Themis; Carey, Larry D.; Schultz, Christopher J.; Schultz, Elise; Calhoun, Kristin; Goodman, Steven J.

    2014-01-01

    This study is concerned with the characteristics of storms exhibiting an abrupt temporal increase in the total lightning flash rate (i.e., lightning jump, LJ). An automated storm tracking method is used to identify storm "clusters" and total lightning activity from three different lightning detection systems over Oklahoma, northern Alabama and Washington, D.C. On average and for different employed thresholds, the clusters that encompass at least one LJ (LJ1) last longer, relate to higher Maximum Expected Size of Hail, Vertical Integrated Liquid and lightning flash rates (area-normalized) than the clusters that did not exhibit any LJ (LJ0). The respective mean values for LJ1 (LJ0) clusters are 80 min (35 min), 14 mm (8 mm), 25 kg per square meter (18 kg per square meter) and 0.05 flash per min per square kilometer (0.01 flash per min per square kilometer). Furthermore, the LJ1 clusters are also characterized by slower decaying autocorrelation functions, a result that implies a less "random" behavior in the temporal flash rate evolution. In addition, the temporal occurrence of the last LJ provides an estimate of the time remaining to the storm's dissipation. Depending of the LJ strength (i.e., varying thresholds), these values typically range between 20-60 min, with stronger jumps indicating more time until storm decay. This study's results support the hypothesis that the LJ is a proxy for the storm's kinematic and microphysical state rather than a coincidental value.

  17. A fast numerical approach to option pricing with stochastic interest rate, stochastic volatility and double jumps

    NASA Astrophysics Data System (ADS)

    Zhang, Sumei; Wang, Lihe

    2013-07-01

    This study proposes a pricing model through allowing for stochastic interest rate and stochastic volatility in the double exponential jump-diffusion setting. The characteristic function of the proposed model is then derived. Fast numerical solutions for European call and put options pricing based on characteristic function and fast Fourier transform (FFT) technique are developed. Simulations show that our numerical technique is accurate, fast and easy to implement, the proposed model is suitable for modeling long-time real-market changes. The model and the proposed option pricing method are useful for empirical analysis of asset returns and risk management in firms.

  18. Anomalous Impact in Reaction-Diffusion Financial Models

    NASA Astrophysics Data System (ADS)

    Mastromatteo, I.; Tóth, B.; Bouchaud, J.-P.

    2014-12-01

    We generalize the reaction-diffusion model A +B → /0 in order to study the impact of an excess of A (or B ) at the reaction front. We provide an exact solution of the model, which shows that the linear response breaks down: the average displacement of the reaction front grows as the square root of the imbalance. We argue that this model provides a highly simplified but generic framework to understand the square-root impact of large orders in financial markets.

  19. Reactive radical facilitated reaction-diffusion modeling for holographic photopolymerization

    SciTech Connect

    Liu Jianhua; Pu Haihui; Gao Bin; Gao Hongyue; Yin Dejin; Dai Haitao

    2010-02-08

    A phenomenological concentration of reactive radical is proposed to take the role of curing light intensity in explicit proportion to the reaction rate for the conventional reaction-diffusion model. This revision rationally eliminates the theoretical defect of null reaction rate in modeling of the postcuring process, and facilitates the applicability of the model in the whole process of holographic photopolymerizations in photocurable monomer and nematic liquid crystal blend system. Excellent consistencies are obtained in both curing and postcuring processes between simulated and experimentally measured evolutions of the first order diffraction efficiency of the formed composite Bragg gratings.

  20. Model-free simulation approach to molecular diffusion tensors.

    PubMed

    Chevrot, Guillaume; Hinsen, Konrad; Kneller, Gerald R

    2013-10-21

    In the present work, we propose a simple model-free approach for the computation of molecular diffusion tensors from molecular dynamics trajectories. The method uses a rigid body trajectory of the molecule under consideration, which is constructed a posteriori by an accumulation of quaternion-based superposition fits of consecutive conformations. From the rigid body trajectory, we compute the translational and angular velocities of the molecule and by integration of the latter also the corresponding angular trajectory. All quantities can be referred to the laboratory frame and a molecule-fixed frame. The 6 × 6 diffusion tensor is computed from the asymptotic slope of the tensorial mean square displacement and, for comparison, also from the Kubo integral of the velocity correlation tensor. The method is illustrated for two simple model systems - a water molecule and a lysozyme molecule in bulk water. We give estimations of the statistical accuracy of the calculations. PMID:24160503

  1. Social influence and perceptual decision making: a diffusion model analysis.

    PubMed

    Germar, Markus; Schlemmer, Alexander; Krug, Kristine; Voss, Andreas; Mojzisch, Andreas

    2014-02-01

    Classic studies on social influence used simple perceptual decision-making tasks to examine how the opinions of others change individuals' judgments. Since then, one of the most fundamental questions in social psychology has been whether social influence can alter basic perceptual processes. To address this issue, we used a diffusion model analysis. Diffusion models provide a stochastic approach for separating the cognitive processes underlying speeded binary decisions. Following this approach, our study is the first to disentangle whether social influence on decision making is due to altering the uptake of available sensory information or due to shifting the decision criteria. In two experiments, we found consistent evidence for the idea that social influence alters the uptake of available sensory evidence. By contrast, participants did not adjust their decision criteria. PMID:24154917

  2. Model-free simulation approach to molecular diffusion tensors

    NASA Astrophysics Data System (ADS)

    Chevrot, Guillaume; Hinsen, Konrad; Kneller, Gerald R.

    2013-10-01

    In the present work, we propose a simple model-free approach for the computation of molecular diffusion tensors from molecular dynamics trajectories. The method uses a rigid body trajectory of the molecule under consideration, which is constructed a posteriori by an accumulation of quaternion-based superposition fits of consecutive conformations. From the rigid body trajectory, we compute the translational and angular velocities of the molecule and by integration of the latter also the corresponding angular trajectory. All quantities can be referred to the laboratory frame and a molecule-fixed frame. The 6 × 6 diffusion tensor is computed from the asymptotic slope of the tensorial mean square displacement and, for comparison, also from the Kubo integral of the velocity correlation tensor. The method is illustrated for two simple model systems - a water molecule and a lysozyme molecule in bulk water. We give estimations of the statistical accuracy of the calculations.

  3. Thermomechanics of damageable materials under diffusion: modelling and analysis

    NASA Astrophysics Data System (ADS)

    Roubíček, Tomáš; Tomassetti, Giuseppe

    2015-12-01

    We propose a thermodynamically consistent general-purpose model describing diffusion of a solute or a fluid in a solid undergoing possible phase transformations and damage, beside possible visco-inelastic processes. Also heat generation/consumption/transfer is considered. Damage is modelled as rate-independent. The applications include metal-hydrogen systems with metal/hydride phase transformation, poroelastic rocks, structural and ferro/para-magnetic phase transformation, water and heat transport in concrete, and if diffusion is neglected, plasticity with damage and viscoelasticity, etc. For the ensuing system of partial differential equations and inclusions, we prove existence of solutions by a carefully devised semi-implicit approximation scheme of the fractional-step type.

  4. Consistent flamelet modeling of differential molecular diffusion for turbulent non-premixed flames

    NASA Astrophysics Data System (ADS)

    Wang, Haifeng

    2016-03-01

    Treating differential molecular diffusion correctly and accurately remains as a great challenge to the modeling of turbulent non-premixed combustion. The aim of this paper is to develop consistent modeling strategies for differential molecular diffusion in flamelet models. Two types of differential molecular diffusion models are introduced, linear differential diffusion models and nonlinear differential diffusion models. A multi-component turbulent mixing layer problem is analyzed in detail to gain insights into differential molecular diffusion and its characteristics, particularly the dependence of differential molecular diffusion on the Reynolds number and the Lewis number. These characteristics are then used to validate the differential molecular diffusion models. Finally, the new models are applied to the modeling of a series of laboratory-scale turbulent non-premixed jet flames with different Reynolds number (Sandia Flames B, C, and D) to further assess the models' performance.

  5. Modeling diffusive transport with a fractional derivative without singular kernel

    NASA Astrophysics Data System (ADS)

    Gómez-Aguilar, J. F.; López-López, M. G.; Alvarado-Martínez, V. M.; Reyes-Reyes, J.; Adam-Medina, M.

    2016-04-01

    In this paper we present an alternative representation of the diffusion equation and the diffusion-advection equation using the fractional calculus approach, the spatial-time derivatives are approximated using the fractional definition recently introduced by Caputo and Fabrizio in the range β , γ ∈(0 ; 2 ] for the space and time domain respectively. In this representation two auxiliary parameters σx and σt are introduced, these parameters related to equation results in a fractal space-time geometry provide an entire new family of solutions for the diffusion processes. The numerical results showed different behaviors when compared with classical model solutions. In the range β , γ ∈(0 ; 1) , the concentration exhibits the non-Markovian Lévy flights and the subdiffusion phenomena; when β = γ = 1 the classical case is recovered; when β , γ ∈(1 ; 2 ] the concentration exhibits the Markovian Lévy flights and the superdiffusion phenomena; finally when β = γ = 2 the concentration is anomalous dispersive and we found ballistic diffusion.

  6. Modeling of Diffuse-Diffuse Photon Coupling via a Nonscattering Region: a Comparative Study

    NASA Astrophysics Data System (ADS)

    Lee, Jae Hoon; Kim, Seunghwan; Kim, Youn Tae

    2004-06-01

    It is well established that diffusion approximation is valid for light propagation in highly scattering media, but it breaks down in nonscattering regions. The previous methods that manipulate nonscattering regions are essentially boundary-to-boundary coupling (BBC) methods through a nonscattering void region based on the radiosity theory. We present a boundary-to-interior coupling (BIC) method. BIC is based on the fact that the collimated pencil beam incident on the medium can be replaced by an isotropic point source positioned at one reduced scattering length inside the medium from an illuminated point. A similar replacement is possible for the nondiffuse lights that enter the diffuse medium through the void, and it is formulated as the BIC method. We implemented both coupling methods using the finite element method (FEM) and tested for the circle with a void gap and for a four-layer adult head model. For mean time of flight, the BIC shows better agreement with Monte Carlo (MC) simulation results than BBC. For intensity, BIC shows a comparable match with MC data compared with that of BBC. The effect of absorption of the clear layer in the adult head model was investigated. Both mean time and intensity decrease as absorption of the clear layer increases.

  7. Modeling of diffuse-diffuse photon coupling via a nonscattering region: a comparative study.

    PubMed

    Lee, Jae Hoon; Kim, Seunghwan; Kim, Youn Tae

    2004-06-20

    It is well established that diffusion approximation is valid for light propagation in highly scattering media, but it breaks down in nonscattering regions. The previous methods that manipulate nonscattering regions are essentially boundary-to-boundary coupling (BBC) methods through a nonscattering void region based on the radiosity theory. We present a boundary-to-interior coupling (BIC) method. BIC is based on the fact that the collimated pencil beam incident on the medium can be replaced by an isotropic point source positioned at one reduced scattering length inside the medium from an illuminated point. A similar replacement is possible for the nondiffuse lights that enter the diffuse medium through the void, and it is formulated as the BIC method. We implemented both coupling methods using the finite element method (FEM) and tested for the circle with a void gap and for a four-layer adult head model. For mean time of flight, the BIC shows better agreement with Monte Carlo (MC) simulation results than BBC. For intensity, BIC shows a comparable match with MC data compared with that of BBC. The effect of absorption of the clear layer in the adult head model was investigated. Both mean time and intensity decrease as absorption of the clear layer increases. PMID:15218604

  8. Tracking a terrain bounce jammer with a diffuse scattering model

    NASA Astrophysics Data System (ADS)

    Nguyen, Joseph H.; Bowyer, Duane E.

    1994-07-01

    This paper presents a simulation model for an air-to-air missile to measure the power losses due to specular and diffuse scattering on various terrains. This includes a range of surfaces from a sea surface of different root-mean-square surface roughness slopes to desert sand. This paper also presents the correlation between theoretical and empirical data for specular scattering on dry land and moist sand.

  9. Modeling of Diffusion in Liquid Ge and Its Alloys

    NASA Technical Reports Server (NTRS)

    Stroud, David G.

    1998-01-01

    This report summarizes progress made on NASA Grant NAG3-1437, Modeling of diffusion in Liquid Ge and Its Alloys, which was in effect from January 15, 1993 through July 10, 1997. It briefly describes the purpose of the grant, and the work accomplished in simulations and other studies of thermophysical properties of liquid semiconductors and related materials. A list of publications completed with the support of the grant is also given.

  10. Extending the Diffuse Layer Model of Surface Acidity Constant Behavior: IV. Diffuse Layer Charge/Potential Relationships

    EPA Science Inventory

    Most current electrostatic surface complexation models describing ionic binding at the particle/water interface rely on the use of Poisson - Boltzmann (PB) theory for relating diffuse layer charge densities to diffuse layer electrostatic potentials. PB theory is known to contain ...

  11. An epidemic model of rumor diffusion in online social networks

    NASA Astrophysics Data System (ADS)

    Cheng, Jun-Jun; Liu, Yun; Shen, Bo; Yuan, Wei-Guo

    2013-01-01

    So far, in some standard rumor spreading models, the transition probability from ignorants to spreaders is always treated as a constant. However, from a practical perspective, the case that individual whether or not be infected by the neighbor spreader greatly depends on the trustiness of ties between them. In order to solve this problem, we introduce a stochastic epidemic model of the rumor diffusion, in which the infectious probability is defined as a function of the strength of ties. Moreover, we investigate numerically the behavior of the model on a real scale-free social site with the exponent γ = 2.2. We verify that the strength of ties plays a critical role in the rumor diffusion process. Specially, selecting weak ties preferentially cannot make rumor spread faster and wider, but the efficiency of diffusion will be greatly affected after removing them. Another significant finding is that the maximum number of spreaders max( S) is very sensitive to the immune probability μ and the decay probability v. We show that a smaller μ or v leads to a larger spreading of the rumor, and their relationships can be described as the function ln(max( S)) = Av + B, in which the intercept B and the slope A can be fitted perfectly as power-law functions of μ. Our findings may offer some useful insights, helping guide the application in practice and reduce the damage brought by the rumor.

  12. Impact Acceleration Model of Diffuse Traumatic Brain Injury.

    PubMed

    Hellewell, Sarah C; Ziebell, Jenna M; Lifshitz, Jonathan; Morganti-Kossmann, M Cristina

    2016-01-01

    The impact acceleration (I/A) model of traumatic brain injury (TBI) was developed to reliably induce diffuse traumatic axonal injury in rats in the absence of skull fractures and parenchymal focal lesions. This model replicates a pathophysiology that is commonly observed in humans with diffuse axonal injury (DAI) caused by acceleration-deceleration forces. Such injuries are typical consequences of motor vehicle accidents and falls, which do not necessarily require a direct impact to the closed skull. There are several desirable characteristics of the I/A model, including the extensive axonal injury produced in the absence of a focal contusion, the suitability for secondary insult modeling, and the adaptability for mild/moderate injury through alteration of height and/or weight. Furthermore, the trauma device is inexpensive and readily manufactured in any laboratory, and the induction of injury is rapid (~45 min per animal from weighing to post-injury recovery) allowing multiple animal experiments per day. In this chapter, we describe in detail the methodology and materials required to produce the rat model of I/A in the laboratory. We also review current adaptations to the model to alter injury severity, discuss frequent complications and technical issues encountered using this model, and provide recommendations to ensure technically sound injury induction. PMID:27604723

  13. THE LOS ALAMOS NATIONAL LABORATORY ATMOSPHERIC TRANSPORT AND DIFFUSION MODELS

    SciTech Connect

    M. WILLIAMS

    1999-08-01

    The LANL atmospheric transport and diffusion models are composed of two state-of-the-art computer codes. The first is an atmospheric wind model called HOThlAC, Higher Order Turbulence Model for Atmospheric circulations. HOTMAC generates wind and turbulence fields by solving a set of atmospheric dynamic equations. The second is an atmospheric diffusion model called RAPTAD, Random Particle Transport And Diffusion. RAPTAD uses the wind and turbulence output from HOTMAC to compute particle trajectories and concentration at any location downwind from a source. Both of these models, originally developed as research codes on supercomputers, have been modified to run on microcomputers. Because the capability of microcomputers is advancing so rapidly, the expectation is that they will eventually become as good as today's supercomputers. Now both models are run on desktop or deskside computers, such as an IBM PC/AT with an Opus Pm 350-32 bit coprocessor board and a SUN workstation. Codes have also been modified so that high level graphics, NCAR Graphics, of the output from both models are displayed on the desktop computer monitors and plotted on a laser printer. Two programs, HOTPLT and RAPLOT, produce wind vector plots of the output from HOTMAC and particle trajectory plots of the output from RAPTAD, respectively. A third CONPLT provides concentration contour plots. Section II describes step-by-step operational procedures, specifically for a SUN-4 desk side computer, on how to run main programs HOTMAC and RAPTAD, and graphics programs to display the results. Governing equations, boundary conditions and initial values of HOTMAC and RAPTAD are discussed in Section III. Finite-difference representations of the governing equations, numerical solution procedures, and a grid system are given in Section IV.

  14. "Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts.

    PubMed

    Ferrari, Francesco; Plachetka, Annette; Alekseyenko, Artyom A; Jung, Youngsook L; Ozsolak, Fatih; Kharchenko, Peter V; Park, Peter J; Kuroda, Mitzi I

    2013-11-14

    Dosage compensation in Drosophila is mediated by the MSL complex, which increases male X-linked gene expression approximately 2-fold. The MSL complex preferentially binds the bodies of active genes on the male X, depositing H4K16ac with a 3' bias. Two models have been proposed for the influence of the MSL complex on transcription: one based on promoter recruitment of RNA polymerase II (Pol II), and a second featuring enhanced transcriptional elongation. Here, we utilize nascent RNA sequencing to document dosage compensation during transcriptional elongation. We also compare X and autosomes from published data on paused and elongating polymerase in order to assess the role of Pol II recruitment. Our results support a model for differentially regulated elongation, starting with release from 5' pausing and increasing through X-linked gene bodies. Our results highlight facilitated transcriptional elongation as a key mechanism for the coordinated regulation of a diverse set of genes. PMID:24183666

  15. Kinematics of the long jump

    NASA Astrophysics Data System (ADS)

    Tan, Ajun; Zumerchik, John

    2000-03-01

    The long jump is one of the most natural events in track and field athletics. The jumper is allowed to run a 40-m runway at top speed and jump as far as possible from a takeoff board. It is an event in which the natural ability of the athlete plays a large role and technique is of secondary importance. The two most important factors in the long jump are speed and elevation.

  16. A Temporal Model of Technology Diffusion into Small Firms in Wales.

    ERIC Educational Resources Information Center

    Thomas, Brychan; Packham, Gary; Miller, Chris

    2001-01-01

    Discusses technology diffusion through formal and informal networks. Develops a model that includes channels and mechanisms involved in transferring technology into innovative small businesses. The model depicts influences that increase or slow the rate of diffusion. (SK)

  17. Super-Resolution Image Reconstruction Using Diffuse Source Models

    PubMed Central

    Ellis, Michael A.; Viola, Francesco; Walker, William F.

    2010-01-01

    Image reconstruction is central to many scientific fields, from medical ultrasound and sonar to computed tomography and computer vision. While lenses play a critical reconstruction role in these fields, digital sensors enable more sophisticated computational approaches. A variety of computational methods have thus been developed, with the common goal of increasing contrast and resolution to extract the greatest possible information from raw data. This paper describes a new image reconstruction method named the Diffuse Time-domain Optimized Near-field Estimator (dTONE). dTONE represents each hypothetical target in the system model as a diffuse region of targets rather than a single discrete target, which more accurately represents the experimental data that arise from signal sources in continuous space, with no additional computational requirements at the time of image reconstruction. Simulation and experimental ultrasound images of animal tissues show that dTONE achieves image resolution and contrast far superior to those of conventional image reconstruction methods. We also demonstrate the increased robustness of the diffuse target model to major sources of image degradation, through the addition of electronic noise, phase aberration, and magnitude aberration to ultrasound simulations. Using experimental ultrasound data from a tissue-mimicking phantom containing a 3 mm diameter anechoic cyst, the conventionally reconstructed image has a cystic contrast of −6.3 dB whereas the dTONE image has a cystic contrast of −14.4 dB. PMID:20447760

  18. Super-resolution image reconstruction using diffuse source models.

    PubMed

    Ellis, Michael A; Viola, Francesco; Walker, William F

    2010-06-01

    Image reconstruction is central to many scientific fields, from medical ultrasound and sonar to computed tomography and computer vision. Although lenses play a critical reconstruction role in these fields, digital sensors enable more sophisticated computational approaches. A variety of computational methods have thus been developed, with the common goal of increasing contrast and resolution to extract the greatest possible information from raw data. This paper describes a new image reconstruction method named the Diffuse Time-domain Optimized Near-field Estimator (dTONE). dTONE represents each hypothetical target in the system model as a diffuse region of targets rather than a single discrete target, which more accurately represents the experimental data that arise from signal sources in continuous space, with no additional computational requirements at the time of image reconstruction. Simulation and experimental ultrasound images of animal tissues show that dTONE achieves image resolution and contrast far superior to those of conventional image reconstruction methods. We also demonstrate the increased robustness of the diffuse target model to major sources of image degradation through the addition of electronic noise, phase aberration and magnitude aberration to ultrasound simulations. Using experimental ultrasound data from a tissue-mimicking phantom containing a 3-mm-diameter anechoic cyst, the conventionally reconstructed image has a cystic contrast of -6.3 dB, whereas the dTONE image has a cystic contrast of -14.4 dB. PMID:20447760

  19. Measurements and modeling of explosive vapor diffusion in snow

    NASA Astrophysics Data System (ADS)

    Albert, Mary R.; Cragin, James H.; Leggett, Daniel C.

    2000-08-01

    The detection of buried mines is important to both for humanitarian and military strategic de-mining both at home and abroad, and recent efforts in chemical detection show promise for definitive identification of buried miens. The impact of weather has a large effect on the fate and transport of the explosives vapor that these systems sense. In many areas of military conflict, and at Army military training grounds in cold regions, winter weather affects military operations for many months of the year. In cold regions, the presence of freezing ground or a snow cover may provide increased temporary storage of the explosive, potentially leading to opportunities for more optimal sensing conditions later. This paper discusses the result of a controlled laboratory experiment to investigate explosives diffusion through snow, quantitative microscopy measurements of snow microstructure including specific surface, and verifications of our transport model using this data. In experiments measuring 1,3-DNB, 2,4-DNT and 2,4,6-TNT we determined an effective diffusion coefficient of 1.5 X 10-6 cm2/s from measurements through isothermal sieved snow with equivalent sphere radius of 0.11 mm. Adsorption is a major factor in diffusive transport of these explosives through snow. The data was used to verify our finite element mole of explosives transport. Measurements and model results show close agreement.

  20. Influence Diffusion Model in Text-Based Communication

    NASA Astrophysics Data System (ADS)

    Matsumura, Naohiro; Ohsawa, Yukio; Ishizuka, Mitsuru

    Business people, especially marketing researchers, are keen to understand peoples' potential sense of value to create fascinating topics stimulating peoples' interest. In this paper, we aim at finding influential people, comments, and terms contributing the discovery of such topics. For this purpose, we propose an Influence Diffusion Model in text-based communication, where the influence of people, comments, and terms are defined as the degree of text-based relevance of messages. We apply this model to Bulletin Board Service(BBS) on the Internet, and present our discoveries on experimental evaluations.

  1. Diffusion model to describe osteogenesis within a porous titanium scaffold.

    PubMed

    Schmitt, M; Allena, R; Schouman, T; Frasca, S; Collombet, J M; Holy, X; Rouch, P

    2016-01-01

    In this study, we develop a two-dimensional finite element model, which is derived from an animal experiment and allows simulating osteogenesis within a porous titanium scaffold implanted in ewe's hemi-mandible during 12 weeks. The cell activity is described through diffusion equations and regulated by the stress state of the structure. We compare our model to (i) histological observations and (ii) experimental data obtained from a mechanical test done on sacrificed animal. We show that our mechano-biological approach provides consistent numerical results and constitutes a useful tool to predict osteogenesis pattern. PMID:25573031

  2. Diffuse-interface modeling of three-phase interactions

    NASA Astrophysics Data System (ADS)

    Park, Jang Min; Anderson, Patrick D.

    2016-05-01

    In this work, a numerical model is developed to study the three-phase interactions which take place when two immiscible drops suspended in a third immiscible liquid are brought together. The diffuse-interface model coupled with the hydrodynamic equations is solved by a standard finite element method. Partial and complete engulfing between two immiscible drops is studied, and the effects of several parameters are discussed. In the partial-engulfing case, two stages of wetting and pulling are identified, which qualitatively agrees with the experiment. In the complete-engulfing case, three stages of wetting and/or penetration, pulling, and spreading are identified.

  3. Effective Diffusivity and Spalling Models for Slagging Coal Gasifiers

    SciTech Connect

    Williford, Rick E.; Johnson, Kenneth I.; Sundaram, S. K.; Pilli, Siva Prasad

    2008-01-08

    A major impact on the economics of coal gasification is the spalling degradation of hot-face refractories in slagging coal gasifiers. Two predictive models for spalling have been previously proposed and benchmarked. Both models express molten slag ingress into the porous refractory in terms of an effective diffusivity, a formulation for which is developed in the present Communication. The results appear useful for predicting the lifetimes of refractories in slagging coal gasifiers, and for determining whether the spall originated from tensile or compressive mechanisms.

  4. A locust-inspired miniature jumping robot.

    PubMed

    Zaitsev, Valentin; Gvirsman, Omer; Ben Hanan, Uri; Weiss, Avi; Ayali, Amir; Kosa, Gabor

    2015-12-01

    Unmanned ground vehicles are mostly wheeled, tracked, or legged. These locomotion mechanisms have a limited ability to traverse rough terrain and obstacles that are higher than the robot's center of mass. In order to improve the mobility of small robots it is necessary to expand the variety of their motion gaits. Jumping is one of nature's solutions to the challenge of mobility in difficult terrain. The desert locust is the model for the presented bio-inspired design of a jumping mechanism for a small mobile robot. The basic mechanism is similar to that of the semilunar process in the hind legs of the locust, and is based on the cocking of a torsional spring by wrapping a tendon-like wire around the shaft of a miniature motor. In this study we present the jumping mechanism design, and the manufacturing and performance analysis of two demonstrator prototypes. The most advanced jumping robot demonstrator is power autonomous, weighs 23 gr, and is capable of jumping to a height of 3.35 m, covering a distance of 1.37 m. PMID:26602094

  5. Characteristics of the probability function for three random-walk models of reaction-diffusion processes

    NASA Astrophysics Data System (ADS)

    Musho, Matthew K.; Kozak, John J.

    1984-10-01

    A method is presented for calculating exactly the relative width (σ2)1/2/, the skewness γ1, and the kurtosis γ2 characterizing the probability distribution function for three random-walk models of diffusion-controlled processes. For processes in which a diffusing coreactant A reacts irreversibly with a target molecule B situated at a reaction center, three models are considered. The first is the traditional one of an unbiased, nearest-neighbor random walk on a d-dimensional periodic/confining lattice with traps; the second involves the consideration of unbiased, non-nearest-neigh bor (i.e., variable-step length) walks on the same d-dimensional lattice; and, the third deals with the case of a biased, nearest-neighbor walk on a d-dimensional lattice (wherein a walker experiences a potential centered at the deep trap site of the lattice). Our method, which has been described in detail elsewhere [P.A. Politowicz and J. J. Kozak, Phys. Rev. B 28, 5549 (1983)] is based on the use of group theoretic arguments within the framework of the theory of finite Markov processes. The approach allows the separate effects of geometry (system size N, dimensionality d, and valency ν), of the governing potential and of the medium temperature to be assessed and their respective influence on (σ2)1/2/, γ1, and γ2 to be studied quantitatively. We determine the classes of potential functions and the regimes of temperature for which allowing variable-length jumps or admitting a bias in the site-to-site trajectory of the walker produces results which are significantly different (both quantitatively and qualitatively) from those calculated assuming only unbiased, nearest-neighbor random walks. Finally, we demonstrate that the approach provides a method for determining a continuous probability (density) distribution function consistent with the numerical data on (σ2)1/2/, γ1, and γ2 for the processes described above. In particular we show that the first of the above reaction-diffusion

  6. Diffusion of innovations in Axelrod’s model

    NASA Astrophysics Data System (ADS)

    Tilles, Paulo F. C.; Fontanari, José F.

    2015-11-01

    Axelrod's model for the dissemination of culture contains two key factors required to model the process of diffusion of innovations, namely, social influence (i.e., individuals become more similar when they interact) and homophily (i.e., individuals interact preferentially with similar others). The strength of these social influences are controlled by two parameters: $F$, the number of features that characterizes the cultures and $q$, the common number of states each feature can assume. Here we assume that the innovation is a new state of a cultural feature of a single individual -- the innovator -- and study how the innovation spreads through the networks among the individuals. For infinite regular lattices in one (1D) and two dimensions (2D), we find that initially the successful innovation spreads linearly with the time $t$, but in the long-time limit it spreads diffusively ($\\sim t^{1/2}$) in 1D and sub-diffusively ($\\sim t/\\ln t$) in 2D. For finite lattices, the growth curves for the number of adopters are typically concave functions of $t$. For random graphs with a finite number of nodes $N$, we argue that the classical S-shaped growth curves result from a trade-off between the average connectivity $K$ of the graph and the per feature diversity $q$. A large $q$ is needed to reduce the pace of the initial spreading of the innovation and thus delimit the early-adopters stage, whereas a large $K$ is necessary to ensure the onset of the take-off stage at which the number of adopters grows superlinearly with $t$. In an infinite random graph we find that the number of adopters of a successful innovation scales with $t^\\gamma$ with $\\gamma =1$ for $K> 2$ and $1/2 < \\gamma < 1$ for $K=2$. We suggest that the exponent $\\gamma$ may be a useful index to characterize the process of diffusion of successful innovations in diverse scenarios.

  7. A Discrete Model to Study Reaction-Diffusion-Mechanics Systems

    PubMed Central

    Weise, Louis D.; Nash, Martyn P.; Panfilov, Alexander V.

    2011-01-01

    This article introduces a discrete reaction-diffusion-mechanics (dRDM) model to study the effects of deformation on reaction-diffusion (RD) processes. The dRDM framework employs a FitzHugh-Nagumo type RD model coupled to a mass-lattice model, that undergoes finite deformations. The dRDM model describes a material whose elastic properties are described by a generalized Hooke's law for finite deformations (Seth material). Numerically, the dRDM approach combines a finite difference approach for the RD equations with a Verlet integration scheme for the equations of the mass-lattice system. Using this framework results were reproduced on self-organized pacemaking activity that have been previously found with a continuous RD mechanics model. Mechanisms that determine the period of pacemakers and its dependency on the medium size are identified. Finally it is shown how the drift direction of pacemakers in RDM systems is related to the spatial distribution of deformation and curvature effects. PMID:21804911

  8. Jumping, snapping and popping at nanometer scale

    NASA Astrophysics Data System (ADS)

    Haviland, David

    2015-03-01

    The 'jump-to-contact' instability is well known in Atomic Force Microscopy. When a tip attached to a soft cantilever approaches a surface, the large attractive force gradient disrupts the quasi-static force balance and the tip snaps in to contact with the surface. Less appreciated is the converse instability, where a soft liquid-like polymer surface jumps to meet the tip. This nano-scale pop is inaudible, but it does leave a distinctive signature if one carefully monitors the cantilever's steady state dynamics when driven with multiple tones. The nonlinear tip-surface interaction causes intermodulation, or frequency mixing of the drive tones. When many intermodulation products are measured close to the cantilever resonance the spectrum can be transformed to reveal the in-phase and quadrature forces acting on the tip, as a function of oscillation amplitude. We present experimental measurements and theoretical modelling that reveal this surface-jump-to-tip instability.

  9. An extended diffusive model for calculating thermal diffusivity from single monopole tokamak heat pulse propagation

    SciTech Connect

    Marinak, M. )

    1990-02-01

    The problem of deducing {chi}{sub e} from measurements of the propagation of a monopole heatpulse is considered. An extended diffusive model, which takes into account perturbed sources and sinks is extended to the case of a monopole heat input. {chi}{sub e} is expressed as a function of two observables, the heat pulse velocity and the radial damping rate. Two simple expressions valid for two different ranges of the radius of the poloidal waist of the beam power profile are given. The expressions are valid in the heat pulse measurement region, extending radially 0.05a beyond the beam power waist to near 0.6a. The inferred {chi}{sub e} is a local value, not an average value of the radial {chi}{sub e} profile. 7 refs., 6 figs., 1 tab.

  10. Bayesian Model Selection with Network Based Diffusion Analysis.

    PubMed

    Whalen, Andrew; Hoppitt, William J E

    2016-01-01

    A number of recent studies have used Network Based Diffusion Analysis (NBDA) to detect the role of social transmission in the spread of a novel behavior through a population. In this paper we present a unified framework for performing NBDA in a Bayesian setting, and demonstrate how the Watanabe Akaike Information Criteria (WAIC) can be used for model selection. We present a specific example of applying this method to Time to Acquisition Diffusion Analysis (TADA). To examine the robustness of this technique, we performed a large scale simulation study and found that NBDA using WAIC could recover the correct model of social transmission under a wide range of cases, including under the presence of random effects, individual level variables, and alternative models of social transmission. This work suggests that NBDA is an effective and widely applicable tool for uncovering whether social transmission underpins the spread of a novel behavior, and may still provide accurate results even when key model assumptions are relaxed. PMID:27092089

  11. A multiphase solute diffusion model for dendritic alloy solidification

    SciTech Connect

    Wang, C.Y.; Beckermann, C.

    1993-12-01

    A solute diffusion model, aimed at predicting microstructure formation in metal castings, is proposed for dendritic solidification of alloys. The model accounts for the different length scales existing in a dendritic structure. This is accomplished by utilizing a multiphase approach, in which not only the various physical phases but also phases associated with different length scales are considered separately. The macroscopic conservation equations are derived for each phase using the volume averaging technique, with constitutive relations developed for the interfacial transfer terms. It is shown that the multiphase model can rigorously incorporate the growth of dendrite tips and coarsening of dendrite arms. In addition, the distinction of different length scales enables the inclusion of realistic descriptions of the dendrite topology and relations to key metallurgical parameters. Another novel aspect of the model is that a single set of conservation equations for solute diffusion is developed for both equiaxed and columnar dendritic solidification. Finally, illustrative calculations for equiaxed, columnar, and mixed columnar-equiaxed solidification are carried out to provide quantitative comparisons with previous studies, and a variety of fundamental phenomena such as recalescence, dendrite tip undercooling, and columnar-to-equiaxed transition (CET) are predicted.

  12. Subgrid models for mass and thermal diffusion in turbulent mixing

    NASA Astrophysics Data System (ADS)

    Lim, H.; Yu, Y.; Glimm, J.; Li, X.-L.; Sharp, D. H.

    2010-12-01

    We propose a new method for the large eddy simulation (LES) of turbulent mixing flows. The method yields convergent probability distribution functions (PDFs) for temperature and concentration and a chemical reaction rate when applied to reshocked Richtmyer-Meshkov (RM) unstable flows. Because such a mesh convergence is an unusual and perhaps original capability for LES of RM flows, we review previous validation studies of the principal components of the algorithm. The components are (i) a front tracking code, FronTier, to control numerical mass diffusion and (ii) dynamic subgrid scale (SGS) models to compensate for unresolved scales in the LES. We also review the relevant code comparison studies. We compare our results to a simple model based on 1D diffusion, taking place in the geometry defined statistically by the interface (the 50% isoconcentration surface between the two fluids). Several conclusions important to physics could be drawn from our study. We model chemical reactions with no closure approximations beyond those in the LES of the fluid variables itself, and as with dynamic SGS models, these closures contain no adjustable parameters. The chemical reaction rate is specified by the joint PDF for temperature and concentration. We observe a bimodal distribution for the PDF and we observe significant dependence on fluid transport parameters.

  13. A Reaction-Diffusion Model of Cholinergic Retinal Waves

    PubMed Central

    Lansdell, Benjamin; Ford, Kevin; Kutz, J. Nathan

    2014-01-01

    Prior to receiving visual stimuli, spontaneous, correlated activity in the retina, called retinal waves, drives activity-dependent developmental programs. Early-stage waves mediated by acetylcholine (ACh) manifest as slow, spreading bursts of action potentials. They are believed to be initiated by the spontaneous firing of Starburst Amacrine Cells (SACs), whose dense, recurrent connectivity then propagates this activity laterally. Their inter-wave interval and shifting wave boundaries are the result of the slow after-hyperpolarization of the SACs creating an evolving mosaic of recruitable and refractory cells, which can and cannot participate in waves, respectively. Recent evidence suggests that cholinergic waves may be modulated by the extracellular concentration of ACh. Here, we construct a simplified, biophysically consistent, reaction-diffusion model of cholinergic retinal waves capable of recapitulating wave dynamics observed in mice retina recordings. The dense, recurrent connectivity of SACs is modeled through local, excitatory coupling occurring via the volume release and diffusion of ACh. In addition to simulation, we are thus able to use non-linear wave theory to connect wave features to underlying physiological parameters, making the model useful in determining appropriate pharmacological manipulations to experimentally produce waves of a prescribed spatiotemporal character. The model is used to determine how ACh mediated connectivity may modulate wave activity, and how parameters such as the spontaneous activation rate and sAHP refractory period contribute to critical wave size variability. PMID:25474327

  14. Bayesian Model Selection with Network Based Diffusion Analysis

    PubMed Central

    Whalen, Andrew; Hoppitt, William J. E.

    2016-01-01

    A number of recent studies have used Network Based Diffusion Analysis (NBDA) to detect the role of social transmission in the spread of a novel behavior through a population. In this paper we present a unified framework for performing NBDA in a Bayesian setting, and demonstrate how the Watanabe Akaike Information Criteria (WAIC) can be used for model selection. We present a specific example of applying this method to Time to Acquisition Diffusion Analysis (TADA). To examine the robustness of this technique, we performed a large scale simulation study and found that NBDA using WAIC could recover the correct model of social transmission under a wide range of cases, including under the presence of random effects, individual level variables, and alternative models of social transmission. This work suggests that NBDA is an effective and widely applicable tool for uncovering whether social transmission underpins the spread of a novel behavior, and may still provide accurate results even when key model assumptions are relaxed. PMID:27092089

  15. Anomalous diffusion in neutral evolution of model proteins

    NASA Astrophysics Data System (ADS)

    Nelson, Erik D.; Grishin, Nick V.

    2015-06-01

    Protein evolution is frequently explored using minimalist polymer models, however, little attention has been given to the problem of structural drift, or diffusion. Here, we study neutral evolution of small protein motifs using an off-lattice heteropolymer model in which individual monomers interact as low-resolution amino acids. In contrast to most earlier models, both the length and folded structure of the polymers are permitted to change. To describe structural change, we compute the mean-square distance (MSD) between monomers in homologous folds separated by n neutral mutations. We find that structural change is episodic, and, averaged over lineages (for example, those extending from a single sequence), exhibits a power-law dependence on n . We show that this exponent depends on the alignment method used, and we analyze the distribution of waiting times between neutral mutations. The latter are more disperse than for models required to maintain a specific fold, but exhibit a similar power-law tail.

  16. On Large Time Behavior and Selection Principle for a Diffusive Carr-Penrose Model

    NASA Astrophysics Data System (ADS)

    Conlon, Joseph G.; Dabkowski, Michael; Wu, Jingchen

    2016-04-01

    This paper is concerned with the study of a diffusive perturbation of the linear LSW model introduced by Carr and Penrose. A main subject of interest is to understand how the presence of diffusion acts as a selection principle, which singles out a particular self-similar solution of the linear LSW model as determining the large time behavior of the diffusive model. A selection principle is rigorously proven for a model which is a semiclassical approximation to the diffusive model. Upper bounds on the rate of coarsening are also obtained for the full diffusive model.

  17. An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations.

    PubMed

    Farr, W M; Mandel, I; Stevens, D

    2015-06-01

    Selection among alternative theoretical models given an observed dataset is an important challenge in many areas of physics and astronomy. Reversible-jump Markov chain Monte Carlo (RJMCMC) is an extremely powerful technique for performing Bayesian model selection, but it suffers from a fundamental difficulty and it requires jumps between model parameter spaces, but cannot efficiently explore both parameter spaces at once. Thus, a naive jump between parameter spaces is unlikely to be accepted in the Markov chain Monte Carlo (MCMC) algorithm and convergence is correspondingly slow. Here, we demonstrate an interpolation technique that uses samples from single-model MCMCs to propose intermodel jumps from an approximation to the single-model posterior of the target parameter space. The interpolation technique, based on a kD-tree data structure, is adaptive and efficient in modest dimensionality. We show that our technique leads to improved convergence over naive jumps in an RJMCMC, and compare it to other proposals in the literature to improve the convergence of RJMCMCs. We also demonstrate the use of the same interpolation technique as a way to construct efficient 'global' proposal distributions for single-model MCMCs without prior knowledge of the structure of the posterior distribution, and discuss improvements that permit the method to be used in higher dimensional spaces efficiently. PMID:26543580

  18. An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations

    PubMed Central

    Farr, W. M.; Mandel, I.; Stevens, D.

    2015-01-01

    Selection among alternative theoretical models given an observed dataset is an important challenge in many areas of physics and astronomy. Reversible-jump Markov chain Monte Carlo (RJMCMC) is an extremely powerful technique for performing Bayesian model selection, but it suffers from a fundamental difficulty and it requires jumps between model parameter spaces, but cannot efficiently explore both parameter spaces at once. Thus, a naive jump between parameter spaces is unlikely to be accepted in the Markov chain Monte Carlo (MCMC) algorithm and convergence is correspondingly slow. Here, we demonstrate an interpolation technique that uses samples from single-model MCMCs to propose intermodel jumps from an approximation to the single-model posterior of the target parameter space. The interpolation technique, based on a kD-tree data structure, is adaptive and efficient in modest dimensionality. We show that our technique leads to improved convergence over naive jumps in an RJMCMC, and compare it to other proposals in the literature to improve the convergence of RJMCMCs. We also demonstrate the use of the same interpolation technique as a way to construct efficient ‘global’ proposal distributions for single-model MCMCs without prior knowledge of the structure of the posterior distribution, and discuss improvements that permit the method to be used in higher dimensional spaces efficiently. PMID:26543580

  19. Physics and the Vertical Jump

    ERIC Educational Resources Information Center

    Offenbacher, Elmer L.

    1970-01-01

    The physics of vertical jumping is described as an interesting illustration for motivating students in a general physics course to master the kinematics and dynamics of one dimensional motion. The author suggests that mastery of the physical principles of the jump may promote understanding of certain biological phenomena, aspects of physical…

  20. Modeling Diffusion Induced Stresses for Lithium-Ion Battery Materials

    NASA Astrophysics Data System (ADS)

    Chiu Huang, Cheng-Kai

    Advancing lithium-ion battery technology is of paramount importance for satisfying the energy storage needs in the U.S., especially for the application in the electric vehicle industry. To provide a better acceleration for electric vehicles, a fast and repeatable discharging rate is required. However, particle fractures and capacity loss have been reported under high current rate (C-rate) during charging/discharging and after a period of cycling. During charging and discharging, lithium ions extract from and intercalate into electrode materials accompanied with the volume change and phase transition between Li-rich phase and Li-poor phase. It is suggested that the diffusion-induced-stress is one of the main reasons causing capacity loss due to the mechanical degradation of electrode particles. Therefore, there is a fundamental need to provide a mechanistic understanding by considering the structure-mechanics-property interactions in lithium-ion battery materials. Among many cathode materials, the olivine-based lithium-iron-phosphate (LiFePO4) with an orthorhombic crystal structure is one of the promising cathode materials for the application in electric vehicles. In this research we first use a multiphysic approach to investigate the stress evolution, especially on the phase boundary during lithiation in single LiFePO4 particles. A diffusion-controlled finite element model accompanied with the experimentally observed phase boundary propagation is developed via a finite element package, ANSYS, in which lithium ion concentration-dependent anisotropic material properties and volume misfits are incorporated. The stress components on the phase boundary are used to explain the Mode I, Mode II, and Mode III fracture propensities in LiFePO4 particles. The elastic strain energy evolution is also discussed to explain why a layer-by-layer lithium insertion mechanism (i.e. first-order phase transformation) is energetically preferred. Another importation issue is how current

  1. DC-Powered Jumping Ring

    NASA Astrophysics Data System (ADS)

    Jeffery, Rondo N.; Amiri, Farhang

    2016-02-01

    The classroom jumping ring demonstration is nearly always performed using alternating current (AC), in which the ring jumps or flies off the extended iron core when the switch is closed. The ring jumps higher when cooled with liquid nitrogen (LN2). We have performed experiments using DC to power the solenoid and find similarities and significant differences from the AC case. In particular, the ring does not fly off the core but rises a short distance and then falls back. If the ring jumps high enough, the rising and the falling motion of the ring does not follow simple vertical motion of a projectile. This indicates that there are additional forces on the ring in each part of its motion. Four possible stages of the motion of the ring with DC are identified, which result from the ring current changing directions during the jump in response to a changing magnetic flux through the moving ring.

  2. Jump conditions in transonic equilibria

    SciTech Connect

    Guazzotto, L.; Betti, R.; Jardin, S. C.

    2013-04-15

    In the present paper, the numerical calculation of transonic equilibria, first introduced with the FLOW code in Guazzotto et al.[Phys. Plasmas 11, 604 (2004)], is critically reviewed. In particular, the necessity and effect of imposing explicit jump conditions at the transonic discontinuity are investigated. It is found that 'standard' (low-{beta}, large aspect ratio) transonic equilibria satisfy the correct jump condition with very good approximation even if the jump condition is not explicitly imposed. On the other hand, it is also found that high-{beta}, low aspect ratio equilibria require the correct jump condition to be explicitly imposed. Various numerical approaches are described to modify FLOW to include the jump condition. It is proved that the new methods converge to the correct solution even in extreme cases of very large {beta}, while they agree with the results obtained with the old implementation of FLOW in lower-{beta} equilibria.

  3. Reading and a Diffusion Model Analysis of Reaction Time

    PubMed Central

    Naples, Adam; Katz, Leonard; Grigorenko, Elena L.

    2012-01-01

    Processing speed is associated with reading performance. However, the literature is not clear either on the definition of processing speed or on why and how it contributes to reading performance. In this study we demonstrated that processing speed, as measured by reaction time, is not a unitary construct. Using the diffusion model of two-choice reaction time, we assessed processing speed in a series of same-different reaction time tasks for letter and number strings. We demonstrated that the association between reaction time and reading performance is driven by processing speed for reading-related information, but not motor or sensory encoding speed. PMID:22612543

  4. A study of hydrogen diffusion flames using PDF turbulence model

    NASA Technical Reports Server (NTRS)

    Hsu, Andrew T.

    1991-01-01

    The application of probability density function (pdf) turbulence models is addressed in this work. For the purpose of accurate prediction of turbulent combustion, an algorithm that combines a conventional CFD flow solver with the Monte Carlo simulation of the pdf evolution equation has been developed. The algorithm has been validated using experimental data for a heated turbulent plane jet. The study of H2-F2 diffusion flames has been carried out using this algorithm. Numerical results compared favorably with experimental data. The computuations show that the flame center shifts as the equivalence ratio changes, and that for the same equivalence ratio, similarity solutions for flames exist.

  5. A study of hydrogen diffusion flames using PDF turbulence model

    NASA Technical Reports Server (NTRS)

    Hsu, Andrew T.

    1991-01-01

    The application of probability density function (pdf) turbulence models is addressed. For the purpose of accurate prediction of turbulent combustion, an algorithm that combines a conventional computational fluid dynamic (CFD) flow solver with the Monte Carlo simulation of the pdf evolution equation was developed. The algorithm was validated using experimental data for a heated turbulent plane jet. The study of H2-F2 diffusion flames was carried out using this algorithm. Numerical results compared favorably with experimental data. The computations show that the flame center shifts as the equivalence ratio changes, and that for the same equivalence ratio, similarity solutions for flames exist.

  6. Modeling the Determinants Influencing the Diffusion of Mobile Internet

    NASA Astrophysics Data System (ADS)

    Alwahaishi, Saleh; Snášel, Václav

    2013-04-01

    Understanding individual acceptance and use of Information and Communication Technology (ICT) is one of the most mature streams of information systems research. In Information Technology and Information System research, numerous theories are used to understand users' adoption of new technologies. Various models were developed including the Innovation Diffusion Theory, Theory of Reasoned Action, Theory of Planned Behavior, Technology Acceptance Model, and recently, the Unified Theory of Acceptance and Use of Technology. This research composes a new hybrid theoretical framework to identify the factors affecting the acceptance and use of Mobile Internet -as an ICT application- in a consumer context. The proposed model incorporates eight constructs: Performance Expectancy (PE), Effort Expectancy (EE), Facilitating Conditions (FC), Social Influences (SI), Perceived Value (PV), Perceived Playfulness (PP), Attention Focus (AF), and Behavioral intention (BI). Individual differences-namely, age, gender, education, income, and experience are moderating the effects of these constructs on behavioral intention and technology use.

  7. A polarizable continuum model for molecules at spherical diffuse interfaces

    NASA Astrophysics Data System (ADS)

    Di Remigio, Roberto; Mozgawa, Krzysztof; Cao, Hui; Weijo, Ville; Frediani, Luca

    2016-03-01

    We present an extension of the Polarizable Continuum Model (PCM) to simulate solvent effects at diffuse interfaces with spherical symmetry, such as nanodroplets and micelles. We derive the form of the Green's function for a spatially varying dielectric permittivity with spherical symmetry and exploit the integral equation formalism of the PCM for general dielectric environments to recast the solvation problem into a continuum solvation framework. This allows the investigation of the solvation of ions and molecules in nonuniform dielectric environments, such as liquid droplets, micelles or membranes, while maintaining the computationally appealing characteristics of continuum solvation models. We describe in detail our implementation, both for the calculation of the Green's function and for its subsequent use in the PCM electrostatic problem. The model is then applied on a few test systems, mainly to analyze the effect of interface curvature on solvation energetics.

  8. A polarizable continuum model for molecules at spherical diffuse interfaces.

    PubMed

    Di Remigio, Roberto; Mozgawa, Krzysztof; Cao, Hui; Weijo, Ville; Frediani, Luca

    2016-03-28

    We present an extension of the Polarizable Continuum Model (PCM) to simulate solvent effects at diffuse interfaces with spherical symmetry, such as nanodroplets and micelles. We derive the form of the Green's function for a spatially varying dielectric permittivity with spherical symmetry and exploit the integral equation formalism of the PCM for general dielectric environments to recast the solvation problem into a continuum solvation framework. This allows the investigation of the solvation of ions and molecules in nonuniform dielectric environments, such as liquid droplets, micelles or membranes, while maintaining the computationally appealing characteristics of continuum solvation models. We describe in detail our implementation, both for the calculation of the Green's function and for its subsequent use in the PCM electrostatic problem. The model is then applied on a few test systems, mainly to analyze the effect of interface curvature on solvation energetics. PMID:27036423

  9. Innovation Diffusion: A Deterministic Model of Space-Time Integration with Physical Analog

    ERIC Educational Resources Information Center

    Haynes, Kingsley E.; And Others

    1977-01-01

    Extends a fundamental temporal diffusion model to integrate space and time dimensions of innovation diffusion. Compares analogous developments in the physical sciences and argues that the proposed model may help link the concepts of catalysts in physical science diffusion processes to the role of change agents in social science systems. (Author/JG)

  10. Ski jump takeoff performance predictions for a mixed-flow, remote-lift STOVL aircraft

    NASA Technical Reports Server (NTRS)

    Birckelbaw, Lourdes G.

    1992-01-01

    A ski jump model was developed to predict ski jump takeoff performance for a short takeoff and vertical landing (STOVL) aircraft. The objective was to verify the model with results from a piloted simulation of a mixed flow, remote lift STOVL aircraft. The prediction model is discussed. The predicted results are compared with the piloted simulation results. The ski jump model can be utilized for basic research of other thrust vectoring STOVL aircraft performing a ski jump takeoff.

  11. A Microscopic Multiphase Diffusion Model of Viable Epidermis Permeability

    PubMed Central

    Nitsche, Johannes M.; Kasting, Gerald B.

    2013-01-01

    A microscopic model of passive transverse mass transport of small solutes in the viable epidermal layer of human skin is formulated on the basis of a hexagonal array of cells (i.e., keratinocytes) bounded by 4-nm-thick, anisotropic lipid bilayers and separated by 1-μm layers of extracellular fluid. Gap junctions and tight junctions with adjustable permeabilities are included to modulate the transport of solutes with low membrane permeabilities. Two keratinocyte aspect ratios are considered to represent basal and spinous cells (longer) and granular cells (more flattened). The diffusion problem is solved in a unit cell using a coordinate system conforming to the hexagonal cross section, and an efficient two-dimensional treatment is applied to describe transport in both the cell membranes and intercellular spaces, given their thinness. Results are presented in terms of an effective diffusion coefficient, D¯epi, and partition coefficient, K¯epi/w, for a homogenized representation of the microtransport problem. Representative calculations are carried out for three small solutes—water, L-glucose, and hydrocortisone—covering a wide range of membrane permeability. The effective transport parameters and their microscopic interpretation can be employed within the context of existing three-layer models of skin transport to provide more realistic estimates of the epidermal concentrations of topically applied solutes. PMID:23708370

  12. SCIMAP: Modelling Diffuse Pollution in Large River Basins

    NASA Astrophysics Data System (ADS)

    Milledge, D.; Heathwaite, L.; Lane, S. N.; Reaney, S. M.

    2009-12-01

    Polluted rivers are a problem for the plants and animals that require clean water to survive. Watershed scale processes can influence instream aquatic ecosystems by delivering fine sediment, solutes and organic matter from diffuse sources. To improve our rivers we need to identify the pollution sources. Models can help us to do this but these rarely address the extent to which risky land uses are hydrologically-connected, and hence able to deliver, to the drainage network. Those that do tend to apply a full hydrological scheme, which is unfeasible for large watersheds. Here we develop a risk-based modelling framework, SCIMAP, for diffuse pollution from agriculture (Nitrate, Phosphate and Fine Sediment). In each case the basis of the analysis is the joint consideration of the probability of a unit of land (25 m2 cell) producing a particular environmental risk and then of that risk reaching the river. The components share a common treatment of hydrological connectivity but differ in their treatment of each pollution type. We test and apply SCIMAP using spatially-distributed instream water quality data for some of the UK’s largest catchments to infer the processes and the associated process parameters that matter in defining their concentrations. We use these to identify a series of risky field locations, where this land use is readily connected to the river system by overland flow.

  13. The Approximate Number System Acuity Redefined: A Diffusion Model Approach

    PubMed Central

    Park, Joonkoo; Starns, Jeffrey J.

    2015-01-01

    While all humans are capable of non-verbally representing numerical quantity using so-called the approximate number system (ANS), there exist considerable individual differences in its acuity. For example, in a non-symbolic number comparison task, some people find it easy to discriminate brief presentations of 14 dots from 16 dots while others do not. Quantifying individual ANS acuity from such a task has become an essential practice in the field, as individual differences in such a primitive number sense is thought to provide insights into individual differences in learned symbolic math abilities. However, the dominant method of characterizing ANS acuity—computing the Weber fraction (w)—only utilizes the accuracy data while ignoring response times (RT). Here, we offer a novel approach of quantifying ANS acuity by using the diffusion model, which accounts both accuracy and RT distributions. Specifically, the drift rate in the diffusion model, which indexes the quality of the stimulus information, is used to capture the precision of the internal quantity representation. Analysis of behavioral data shows that w is contaminated by speed-accuracy tradeoff, making it problematic as a measure of ANS acuity, while drift rate provides a measure more independent from speed-accuracy criterion settings. Furthermore, drift rate is a better predictor of symbolic math ability than w, suggesting a practical utility of the measure. These findings demonstrate critical limitations of the use of w and suggest clear advantages of using drift rate as a measure of primitive numerical competence. PMID:26733929

  14. Modeling viscosity and diffusion of plasma mixtures across coupling regimes

    NASA Astrophysics Data System (ADS)

    Arnault, Philippe

    2014-10-01

    Viscosity and diffusion of plasma for pure elements and multicomponent mixtures are modeled from the high-temperature low-density weakly coupled regime to the low-temperature high-density strongly coupled regime. Thanks to an atom in jellium modeling, the effect of electron screening on the ion-ion interaction is incorporated through a self-consistent definition of the ionization. This defines an effective One Component Plasma, or an effective Binary Ionic Mixture, that is representative of the strength of the interaction. For the viscosity and the interdiffusion of mixtures, approximate kinetic expressions are supplemented by mixing laws applied to the excess viscosity and self-diffusion of pure elements. The comparisons with classical and quantum molecular dynamics results reveal deviations in the range 20--40% on average with almost no predictions further than a factor of 2 over many decades of variation. Applications in the inertial confinement fusion context could help in predicting the growth of hydrodynamic instabilities.

  15. Diffusion dynamics in the disordered Bose Hubbard model

    NASA Astrophysics Data System (ADS)

    Wadleigh, Laura; Russ, Philip; Demarco, Brian

    2016-05-01

    We explore the dynamics of diffusion for out-of-equilibrium superfluid, Mott insulator, and Bose glass states using an atomic realization of the disordered Bose Hubbard (DBH) model. Dynamics in strongly correlated systems, especially far from equilibrium, are not well understood. The introduction of disorder further complicates these systems. We realize the DBH model--which has been central to our understanding of quantum phase transitions in disordered systems--using ultracold Rubidium-87 atoms trapped in a cubic disordered optical lattice. By tightly focusing a beam into the center of the gas, we create a hole in the atomic density profile. We achieve Mott insulator, superfluid, or Bose glass states by varying the interaction and disorder strength, and measure the time evolution of the density profile after removing the central barrier. This allows us to infer diffusion rates from the velocities at the edge of the hole and to look for signatures of superfluid puddles in the Bose glass state. We acknowledge funding from NSF Grant PHY 15-05468, NSF Grant DGE-1144245, and ARO Grant W911NF-12-1-0462.

  16. Lift-off dynamics in a simple jumping robot

    NASA Astrophysics Data System (ADS)

    Aguilar, Jeffrey; Lesov, Alex; Wiesenfeld, Kurt; Goldman, Daniel I.

    2013-03-01

    Jumping is an important behavior utilized by animals to escape predation, hunt, reach higher ground, and as a primary mode of locomotion. Many mathematical and physical robot models use numerous parameters and multi-link legs to accurately model jumping dynamics. However, a simple robot model can reveal important principles of high performance jumping. We study vertical jumping in a simple robot comprising an actuated mass-spring arrangement. The actuator frequency and phase are systematically varied to find optimal performance. Optimal jumps occur above and below (but not at) the robot's resonant frequency f0. Two distinct jumping modes emerge: a simple jump which is optimal above f0 is achievable with a squat maneuver, and a peculiar stutter jump which is optimal below f0 is generated with a counter-movement. A simple dynamical model reveals how optimal lift-off results from non-resonant transient dynamics. An expanded explanation of this work is provided at http://crablab.gatech.edu/pages/jumpingrobot/index.html This work was supported by the GEM Consortium, Burroughs Wellcome Fund, ARL MAST CTA, and NSF PoLS.

  17. Comparison of Turbulent Thermal Diffusivity and Scalar Variance Models

    NASA Technical Reports Server (NTRS)

    Yoder, Dennis A.

    2016-01-01

    In this study, several variable turbulent Prandtl number formulations are examined for boundary layers, pipe flow, and axisymmetric jets. The model formulations include simple algebraic relations between the thermal diffusivity and turbulent viscosity as well as more complex models that solve transport equations for the thermal variance and its dissipation rate. Results are compared with available data for wall heat transfer and profile measurements of mean temperature, the root-mean-square (RMS) fluctuating temperature, turbulent heat flux and turbulent Prandtl number. For wall-bounded problems, the algebraic models are found to best predict the rise in turbulent Prandtl number near the wall as well as the log-layer temperature profile, while the thermal variance models provide a good representation of the RMS temperature fluctuations. In jet flows, the algebraic models provide no benefit over a constant turbulent Prandtl number approach. Application of the thermal variance models finds that some significantly overpredict the temperature variance in the plume and most underpredict the thermal growth rate of the jet. The models yield very similar fluctuating temperature intensities in jets from straight pipes and smooth contraction nozzles, in contrast to data that indicate the latter should have noticeably higher values. For the particular low subsonic heated jet cases examined, changes in the turbulent Prandtl number had no effect on the centerline velocity decay.

  18. Pre-Clinical Models of Diffuse Intrinsic Pontine Glioma

    PubMed Central

    Misuraca, Katherine L.; Cordero, Francisco J.; Becher, Oren J.

    2015-01-01

    Diffuse intrinsic pontine glioma (DIPG) is a rare and incurable brain tumor that arises in the brainstem of children predominantly between the ages of 6 and 8. Its intricate morphology and involvement of normal pons tissue precludes surgical resection, and the standard of care today remains fractionated radiation alone. In the past 30 years, there have been no significant advances made in the treatment of DIPG. This is largely because we lack good models of DIPG and therefore have little biological basis for treatment. In recent years, however, due to increased biopsy and acquisition of autopsy specimens, research is beginning to unravel the genetic and epigenetic drivers of DIPG. Insight gleaned from these studies has led to improvements in approaches to both model these tumors in the lab and to potentially treat them in the clinic. This review will detail the initial strides toward modeling DIPG in animals, which included allograft and xenograft rodent models using non-DIPG glioma cells. Important advances in the field came with the development of in vitro cell and in vivo xenograft models derived directly from autopsy material of DIPG patients or from human embryonic stem cells. Finally, we will summarize the progress made in the development of genetically engineered mouse models of DIPG. Cooperation of studies incorporating all of these modeling systems to both investigate the unique mechanisms of gliomagenesis in the brainstem and to test potential novel therapeutic agents in a preclinical setting will result in improvement in treatments for DIPG patients. PMID:26258075

  19. On Modeling Viral Diffusion in Heterogeneous Wireless Networks

    NASA Astrophysics Data System (ADS)

    Nguyen, Hoai-Nam; Shinoda, Yoichi

    Smart phones and computers now are able to co-work in a wireless environment where malware can propagate. Although many investigations have modeled the spread of malware, little has been done to take into account different characteristics of items to see how they affect disease diffusion in an ad hoc network. We have therefore developed a novel framework, consisting of two models, which consider diversity of objects as well as interactions between their different classes. Our framework is able to produce a huge result space thus makes it appropriate to describe many viral proliferating scenarios. Additionally, we have developed a formula to calculate the possible average number of newly infected devices in the considered system. An important contribution of our work is the comprehension of item diversity, which states that a mixture of device types causes a bigger malware spread as the number of device types in the network increases.

  20. Modeling realistic breast lesions using diffusion limited aggregation

    NASA Astrophysics Data System (ADS)

    Rashidnasab, Alaleh; Elangovan, Premkumar; Dance, David R.; Young, Kenneth C.; Diaz, Oliver; Wells, Kevin

    2012-03-01

    Synthesizing the appearance of malignant masses and inserting these into digital mammograms can be used as part of a wider framework for investigating the radiological detection task in X-ray mammography. However, the randomness associated with cell division within cancerous masses and the associated complex morphology challenges the realism of the modeling process. In this paper, Diffusion Limited Aggregation (DLA), a type of fractal growth process is proposed and utilized for modeling breast lesions. Masses of different sizes, shapes and densities were grown by controlling DLA growth parameters either prior to growth, or dynamically updating these during growth. A validation study was conducted by presenting 30 real and 30 simulated masses in a random order to a team of radiologists. The results from the validation study suggest that the observers found it difficult to differentiate between the real and simulated lesions.

  1. A Lattice Boltzmann Model for Oscillating Reaction-Diffusion

    NASA Astrophysics Data System (ADS)

    Rodríguez-Romo, Suemi; Ibañez-Orozco, Oscar; Sosa-Herrera, Antonio

    2016-07-01

    A computational algorithm based on the lattice Boltzmann method (LBM) is proposed to model reaction-diffusion systems. In this paper, we focus on how nonlinear chemical oscillators like Belousov-Zhabotinsky (BZ) and the chlorite-iodide-malonic acid (CIMA) reactions can be modeled by LBM and provide with new insight into the nature and applications of oscillating reactions. We use Gaussian pulse initial concentrations of sulfuric acid in different places of a bidimensional reactor and nondiffusive boundary walls. We clearly show how these systems evolve to a chaotic attractor and produce specific pattern images that are portrayed in the reactions trajectory to the corresponding chaotic attractor and can be used in robotic control.

  2. LIII subshell absorption jump ratio and jump factor of tantalum

    NASA Astrophysics Data System (ADS)

    Cengiz, Erhan; Dogan, Muhammet; Koksal, Oguz Kagan

    2013-04-01

    The LIII subshell absorption jump ratio and jump factor of tantalum have been calculated for the first time by the mass attenuation coefficients determined using narrow transmission geometry, primary source (241Am annular radioisotope source) and secondary source targets (Ni, Cu, Zn, Ga, As, Tb, Ho, Er, Tm, Yb, Cu, Hf, Ta, W, Re, Os, Ir, Pt, Au, Hg, Tl, Pb, Bi). The obtained results have been compared with theoretical values. They are in good agreement with each other.

  3. Rule-based spatial modeling with diffusing, geometrically constrained molecules

    PubMed Central

    2010-01-01

    Background We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our approach molecules possess a location in the reactor as well as an orientation and geometry, while the reactions are carried out according to a list of implicitly specified reaction rules. Because the reaction rules can contain patterns for molecules, a combinatorially complex or even infinitely sized reaction network can be defined. For our implementation (based on LAMMPS), we have chosen an already existing formalism (BioNetGen) for the implicit specification of the reaction network. This compatibility allows to import existing models easily, i.e., only additional geometry data files have to be provided. Results Our simulations show that the obtained dynamics can be fundamentally different from those simulations that use classical reaction-diffusion approaches like Partial Differential Equations or Gillespie-type spatial stochastic simulation. We show, for example, that the combination of combinatorial complexity and geometric effects leads to the emergence of complex self-assemblies and transportation phenomena happening faster than diffusion (using a model of molecular walkers on microtubules). When the mentioned classical simulation approaches are applied, these aspects of modeled systems cannot be observed without very special treatment. Further more, we show that the geometric information can even change the organizational structure of the reaction system. That is, a set of chemical species that can in principle form a stationary state in a Differential Equation formalism, is potentially unstable when geometry is considered, and vice versa. Conclusions We conclude that our approach provides a new general framework filling a gap in between approaches with no or rigid spatial representation like Partial Differential Equations and specialized coarse-grained spatial simulation systems like

  4. NMR signal for particles diffusing under potentials: From path integrals and numerical methods to a model of diffusion anisotropy

    NASA Astrophysics Data System (ADS)

    Yolcu, Cem; Memiç, Muhammet; Şimşek, Kadir; Westin, Carl-Fredrik; Özarslan, Evren

    2016-05-01

    We study the influence of diffusion on NMR experiments when the molecules undergo random motion under the influence of a force field and place special emphasis on parabolic (Hookean) potentials. To this end, the problem is studied using path integral methods. Explicit relationships are derived for commonly employed gradient waveforms involving pulsed and oscillating gradients. The Bloch-Torrey equation, describing the temporal evolution of magnetization, is modified by incorporating potentials. A general solution to this equation is obtained for the case of parabolic potential by adopting the multiple correlation function (MCF) formalism, which has been used in the past to quantify the effects of restricted diffusion. Both analytical and MCF results were found to be in agreement with random walk simulations. A multidimensional formulation of the problem is introduced that leads to a new characterization of diffusion anisotropy. Unlike the case of traditional methods that employ a diffusion tensor, anisotropy originates from the tensorial force constant, and bulk diffusivity is retained in the formulation. Our findings suggest that some features of the NMR signal that have traditionally been attributed to restricted diffusion are accommodated by the Hookean model. Under certain conditions, the formalism can be envisioned to provide a viable approximation to the mathematically more challenging restricted diffusion problems.

  5. Effective Diffusion Coefficient and Controlling Process of P Diffusion in Si Based on the Pair Diffusion Models of Vacancy and Interstitial Mechanisms

    NASA Astrophysics Data System (ADS)

    Yoshida, Masayuki; Morooka, Masami; Takahashi, Manabu; Tomokage, Hajime

    2000-05-01

    Based on the pair diffusion models of vacancy and interstitial (V and I) mechanisms, the V and I components of effective P diffusion coefficient, DP^+,Veff and DP^+,Ieff, and the controlling process of P diffusion in Si are obtained. Assuming that the I mechanism is dominant, not only the I- concentration, CI^-, but also its gradient, d CI^-/d λ , is effective on DP^+,Ieff at high CP^+. DP^+,Ieff is large at d CI^-/d λ <0 and small at d CI^-/d λ >0. P+ and I- are generated by the dissociation of P-I pair. When excess I- thus generated is removed, d CI^-/d λ <0 is obtained. d CI^-/d λ <0 is also obtained by the decrease in quasi self-interstitial formation energy. Several diffusion models simulate the P diffusion profile well under an inert atmosphere. Applying the controlling process to them, the reason why they simulate the P profile well is investigated. Because all of them simulate the P profile well, it is difficult to conclude which model is correct. It is suggested that it is possible to conclude which model is correct from the P profile under oxidation at CP^+s >1× 1020 cm-3 (s: surface).

  6. Photoionized Mixing Layer Models of the Diffuse Ionized Gas

    NASA Astrophysics Data System (ADS)

    Binette, Luc; Flores-Fajardo, Nahiely; Raga, Alejandro C.; Drissen, Laurent; Morisset, Christophe

    2009-04-01

    It is generally believed that O stars, confined near the galactic midplane, are somehow able to photoionize a significant fraction of what is termed the "diffuse ionized gas" (DIG) of spiral galaxies, which can extend up to 1-2 kpc above the galactic midplane. The heating of the DIG remains poorly understood, however, as simple photoionization models do not reproduce the observed line ratio correlations well or the DIG temperature. We present turbulent mixing layer (TML) models in which warm photoionized condensations are immersed in a hot supersonic wind. Turbulent dissipation and mixing generate an intermediate region where the gas is accelerated, heated, and mixed. The emission spectrum of such layers is compared with observations of Rand of the DIG in the edge-on spiral NGC 891. We generate two sequence of models that fit the line ratio correlations between [S II]/Hα, [O I]/Hα, [N II]/[S II], and [O III]/Hβ reasonably well. In one sequence of models, the hot wind velocity increases, while in the other, the ionization parameter and layer opacity increase. Despite the success of the mixing layer models, the overall efficiency in reprocessing the stellar UV is much too low, much less than 1%, which compels us to reject the TML model in its present form.

  7. Modeling the role of diffusion coefficients on Turing instability in a reaction-diffusion prey-predator system.

    PubMed

    Mukhopadhyay, B; Bhattacharyya, R

    2006-02-01

    The paper is concerned with the effect of variable dispersal rates on Turing instability of a non-Lotka-Volterra reaction-diffusion system. In ecological applications, the dispersal rates of different species tends to oscillate in time. This oscillation is modeled by temporal variation in the diffusion coefficient with large as well as small periodicity. The case of large periodicity is analyzed using the theory of Floquet multipliers and that of the small periodicity by using Hill's equation. The effect of such variation on the resulting Turing space is studied. A comparative analysis of the Turing spaces with constant diffusivity and variable diffusivities is performed. Numerical simulations are carried out to support analytical findings. PMID:16794932

  8. LHC Beam Diffusion Dependence on RF Noise: Models And Measurements

    SciTech Connect

    Mastorides, T.; Rivetta, C.; Fox, J.D.; Van Winkle, D.; Baudrenghien, P.; Butterworth, A.; Molendijk, J.; /CERN

    2010-09-14

    Radio Frequency (RF) accelerating system noise and non-idealities can have detrimental impact on the LHC performance through longitudinal motion and longitudinal emittance growth. A theoretical formalism has been developed to relate the beam and RF loop dynamics with the bunch length growth [1]. Measurements were conducted at LHC to validate the formalism, determine the performance limiting RF components, and provide the foundation for beam diffusion estimates for higher energies and intensities. A brief summary of these results is presented in this work. During a long store, the relation between the energy lost to synchrotron radiation and the noise injected to the beam by the RF accelerating voltage determines the growth of the bunch energy spread and longitudinal emittance. Since the proton synchrotron radiation in the LHC is very low, the beam diffusion is extremely sensitive to RF perturbations. The theoretical formalism presented in [1], suggests that the noise experienced by the beam depends on the cavity phase noise power spectrum, filtered by the beam transfer function, and aliased due to the periodic sampling of the accelerating voltage signal V{sub c}. Additionally, the dependence of the RF accelerating cavity noise spectrum on the Low Level RF (LLRF) configurations has been predicted using time-domain simulations and models [2]. In this work, initial measurements at the LHC supporting the above theoretical formalism and simulation predictions are presented.

  9. Magnetic field diffusion modeling of a small enclosed firing system

    SciTech Connect

    Warne, L.K.; Merewether, K.O.

    1996-01-01

    Intense magnetic fields exist in the immediate vicinity of a lightning strike (and near power lines). Conducting barriers increase the rise time (and thus decrease the rise rate) interior to the barrier, but typically do not prevent penetration of the magnetic field, since the lightning current fall time may be larger than the barrier diffusion time. Thus, substantial energy is present in the interior field, although the degradation of rise rate makes it more difficult to couple into electrical circuits. This report assesses the threat posed by the diffusive magnetic field to interior components and wire loops (where voltages are induced). Analytical and numerical bounding analyses are carried out on a pill box shaped conducting barrier to develop estimates for the worst case magnetic field threats inside the system. Worst case induced voltages and energies are estimated and compared with threshold charge voltages and energies on the output capacitor of the system. Variability of these quantities with respect to design parameters are indicated. The interior magnetic field and induced voltage estimates given in this report can be used as excitations for more detailed interior and component models.

  10. Analytical model of diffuse reflectance spectrum of skin tissue

    SciTech Connect

    Lisenko, S A; Kugeiko, M M; Firago, V A; Sobchuk, A N

    2014-01-31

    We have derived simple analytical expressions that enable highly accurate calculation of diffusely reflected light signals of skin in the spectral range from 450 to 800 nm at a distance from the region of delivery of exciting radiation. The expressions, taking into account the dependence of the detected signals on the refractive index, transport scattering coefficient, absorption coefficient and anisotropy factor of the medium, have been obtained in the approximation of a two-layer medium model (epidermis and dermis) for the same parameters of light scattering but different absorption coefficients of layers. Numerical experiments on the retrieval of the skin biophysical parameters from the diffuse reflectance spectra simulated by the Monte Carlo method show that commercially available fibre-optic spectrophotometers with a fixed distance between the radiation source and detector can reliably determine the concentration of bilirubin, oxy- and deoxyhaemoglobin in the dermis tissues and the tissue structure parameter characterising the size of its effective scatterers. We present the examples of quantitative analysis of the experimental data, confirming the correctness of estimates of biophysical parameters of skin using the obtained analytical expressions. (biophotonics)

  11. Analytical model of diffuse reflectance spectrum of skin tissue

    NASA Astrophysics Data System (ADS)

    Lisenko, S. A.; Kugeiko, M. M.; Firago, V. A.; Sobchuk, A. N.

    2014-01-01

    We have derived simple analytical expressions that enable highly accurate calculation of diffusely reflected light signals of skin in the spectral range from 450 to 800 nm at a distance from the region of delivery of exciting radiation. The expressions, taking into account the dependence of the detected signals on the refractive index, transport scattering coefficient, absorption coefficient and anisotropy factor of the medium, have been obtained in the approximation of a two-layer medium model (epidermis and dermis) for the same parameters of light scattering but different absorption coefficients of layers. Numerical experiments on the retrieval of the skin biophysical parameters from the diffuse reflectance spectra simulated by the Monte Carlo method show that commercially available fibre-optic spectrophotometers with a fixed distance between the radiation source and detector can reliably determine the concentration of bilirubin, oxy- and deoxyhaemoglobin in the dermis tissues and the tissue structure parameter characterising the size of its effective scatterers. We present the examples of quantitative analysis of the experimental data, confirming the correctness of estimates of biophysical parameters of skin using the obtained analytical expressions.

  12. Postural control model interpretation of stabilogram diffusion analysis

    NASA Technical Reports Server (NTRS)

    Peterka, R. J.

    2000-01-01

    Collins and De Luca [Collins JJ. De Luca CJ (1993) Exp Brain Res 95: 308-318] introduced a new method known as stabilogram diffusion analysis that provides a quantitative statistical measure of the apparently random variations of center-of-pressure (COP) trajectories recorded during quiet upright stance in humans. This analysis generates a stabilogram diffusion function (SDF) that summarizes the mean square COP displacement as a function of the time interval between COP comparisons. SDFs have a characteristic two-part form that suggests the presence of two different control regimes: a short-term open-loop control behavior and a longer-term closed-loop behavior. This paper demonstrates that a very simple closed-loop control model of upright stance can generate realistic SDFs. The model consists of an inverted pendulum body with torque applied at the ankle joint. This torque includes a random disturbance torque and a control torque. The control torque is a function of the deviation (error signal) between the desired upright body position and the actual body position, and is generated in proportion to the error signal, the derivative of the error signal, and the integral of the error signal [i.e. a proportional, integral and derivative (PID) neural controller]. The control torque is applied with a time delay representing conduction, processing, and muscle activation delays. Variations in the PID parameters and the time delay generate variations in SDFs that mimic real experimental SDFs. This model analysis allows one to interpret experimentally observed changes in SDFs in terms of variations in neural controller and time delay parameters rather than in terms of open-loop versus closed-loop behavior.

  13. BF{sub 3} PIII modeling: Implantation, amorphisation and diffusion

    SciTech Connect

    Essa, Z.; Cristiano, F.; Spiegel, Y.; Boulenc, P.; Qiu, Y.; Quillec, M.; Taleb, N.; Burenkov, A.; Hackenberg, M.; Bedel-Pereira, E.; Mortet, V.; Torregrosa, Frank; Tavernier, C.

    2012-11-06

    In the race for highly doped ultra-shallow junctions (USJs) in complementary metal oxide semi-conductor (CMOS) technologies, plasma immersion ion implantation (PIII) is a promising alternative to traditional beamline implantation. Currently, no commercial technology computer aided design (TCAD) process simulator allows modeling the complete USJ fabrication process by PIII, including as-implanted dopant profiles, damage formation, dopant diffusion and activation. In this work, a full simulation of a p-type BF{sub 3} PIII USJ has been carried out. In order to investigate the various physical phenomena mentioned above, process conditions included a high energy/high dose case (10 kV, 5 Multiplication-Sign 10{sup 15} cm{sup -2}), specifically designed to increase damage formation, as well as more technology relevant implant conditions (0.5 kV) for comparison. All implanted samples were annealed at different temperatures and times. As implanted profiles for both boron and fluorine in BF{sub 3} implants were modeled and compared to Secondary Ion Mass Spectrometry (SIMS) measurements. Amorphous/crystalline (a/c) interface depths were measured by transmission electron microscopy (TEM) and successfully simulated. Diffused profiles simulations agreed with SIMS data at low thermal budgets. A boron peak behind the a/c interface was observed in all annealed SIMS profiles for the 10 kV case, indicating boron trapping from EOR defects in this region even after high thermal budgets. TEM measurements on the annealed samples showed an end of range (EOR) defects survival behind the a/c interface, including large dislocation loops (DLs) lying on (001) plane parallel to the surface. In the last part of this work, activation simulations were compared to Hall measurements and confirmed the need to develop a (001) large BICs model.

  14. Complex Geometric Models of Diffusion and Relaxation in Healthy and Damaged White Matter

    PubMed Central

    Farrell, Jonathan A.D.; Smith, Seth A.; Reich, Daniel S.; Calabresi, Peter A.; van Zijl, Peter C.M.

    2010-01-01

    Which aspects of tissue microstructure affect diffusion weighted MRI signals? Prior models, many of which use Monte-Carlo simulations, have focused on relatively simple models of the cellular microenvironment and have not considered important anatomic details. With the advent of higher-order analysis models for diffusion imaging, such as high-angular-resolution diffusion imaging (HARDI), more realistic models are necessary. This paper presents and evaluates the reproducibility of simulations of diffusion in complex geometries. Our framework is quantitative, does not require specialized hardware, is easily implemented with little programming experience, and is freely available as open-source software. Models may include compartments with different diffusivities, permeabilities, and T2 time constants using both parametric (e.g., spheres and cylinders) and arbitrary (e.g., mesh-based) geometries. Three-dimensional diffusion displacement-probability functions are mapped with high reproducibility, and thus can be readily used to assess reproducibility of diffusion-derived contrasts. PMID:19739233

  15. A model for the diffuse attenuation coefficient of downwelling irradiance

    NASA Astrophysics Data System (ADS)

    Lee, Zhong-Ping; Du, Ke-Ping; Arnone, Robert

    2005-02-01

    The diffuse attenuation coefficient for downwelling irradiance (Kd) is an important parameter for ocean studies. For the vast ocean the only feasible means to get fine-scale measurements of Kd is by ocean color remote sensing. At present, values of Kd from remote sensing are estimated using empirical algorithms. Such an approach is insufficient to provide an understanding regarding the variation of Kd and contains large uncertainties in the derived values. In this study a semianalytical model for Kd is developed based on the radiative transfer equation, with values of the model parameters derived from Hydrolight simulations using the averaged particle phase function. The model is further tested with data simulated using significantly different particle phase functions, and the modeled Kd are found matching Hydrolight Kd very well (˜2% average error and ˜12% maximum error). Such a model provides an improved interpretation about the variation of Kd and a basis to more accurately determine Kd (especially using data from remote sensing).

  16. A seed-diffusion model for tropical tree diversity patterns

    NASA Astrophysics Data System (ADS)

    Derzsi, A.; Néda, Z.

    2012-10-01

    Diversity patterns of tree species in a tropical forest community are approached by a simple lattice model and investigated by Monte Carlo simulations using a backtracking method. Our spatially explicit neutral model is based on a simple statistical physics process, namely the diffusion of seeds. The model has three parameters: the speciation rate, the size of the meta-community in which the studied tree-community is embedded, and the average surviving time of the seeds. By extensive computer simulations we aim towards the reproduction of relevant statistical measures derived from the experimental data of the Barro Colorado Island tree census in 1995. The first two parameters of the model are fixed to known values, characteristic of the studied community, thus obtaining a model with only one freely adjustable parameter. As a result of this, the average number of species in the considered territory, the relative species abundance distribution, the species-area relationship and the spatial auto-correlation function of the individuals in abundant species are simultaneously fitted with only one parameter which is the average surviving time of the seeds.

  17. Safety assessment of jumps in ski racing.

    PubMed

    Schindelwig, K; Reichl, W; Kaps, P; Mössner, M; Nachbauer, W

    2015-12-01

    The influence of important parameters on the flight trajectory for jumps in downhill World Cup races was investigated. To quantify the impact injury risk at landing, the parameter equivalent landing height (ELH) was introduced, which considered a variable slope inclination during the landing movement. Altogether, 145 runs at four different jumps in World Cup races and trainings were recorded and analyzed. A simulation model was developed to predict the flight phase of the skier. Drag and lift areas were selected by parameter identification to fit the simulation trajectory to the two-dimensional data from the video analysis. The maximum values of the ELH which can be absorbed with muscle force was taken from the study of Minetti et al. for elite female and male ski racers. A sensitivity analysis based on the four jumps showed that ELH is mainly influenced by takeoff angle, takeoff speed, and the steepness of the landing surface. With the help of the developed simulation software, it should be possible to predict the ELH for jumps in advance. In case of an excessive ELH, improvements can be made by changing the takeoff inclination or the approach speed. PMID:25123506

  18. Physical re-examination of parameters on a molecular collisions-based diffusion model for diffusivity prediction in polymers.

    PubMed

    Ohashi, Hidenori; Tamaki, Takanori; Yamaguchi, Takeo

    2011-12-29

    Molecular collisions, which are the microscopic origin of molecular diffusive motion, are affected by both the molecular surface area and the distance between molecules. Their product can be regarded as the free space around a penetrant molecule defined as the "shell-like free volume" and can be taken as a characteristic of molecular collisions. On the basis of this notion, a new diffusion theory has been developed. The model can predict molecular diffusivity in polymeric systems using only well-defined single-component parameters of molecular volume, molecular surface area, free volume, and pre-exponential factors. By consideration of the physical description of the model, the actual body moved and which neighbor molecules are collided with are the volume and the surface area of the penetrant molecular core. In the present study, a semiempirical quantum chemical calculation was used to calculate both of these parameters. The model and the newly developed parameters offer fairly good predictive ability. PMID:22082054

  19. Detection of confinement and jumps in single-molecule membrane trajectories

    NASA Astrophysics Data System (ADS)

    Meilhac, N.; Le Guyader, L.; Salomé, L.; Destainville, N.

    2006-01-01

    We propose a variant of the algorithm by [R. Simson, E. D. Sheets, and K. Jacobson, Biophys. 69, 989 (1995)]. Their algorithm was developed to detect transient confinement zones in experimental single-particle tracking trajectories of diffusing membrane proteins or lipids. We show that our algorithm is able to detect confinement in a wider class of confining potential shapes than that of Simson Furthermore, it enables to detect not only temporary confinement but also jumps between confinement zones. Jumps are predicted by membrane skeleton fence and picket models. In the case of experimental trajectories of μ -opioid receptors, which belong to the family of G-protein-coupled receptors involved in a signal transduction pathway, this algorithm confirms that confinement cannot be explained solely by rigid fences.

  20. On the behavior of Kazhikov-Smagulov mass diffusion model for vanishing diffusion and viscosity coefficients

    NASA Astrophysics Data System (ADS)

    Araruna, F. D.; Braz e Silva, P.; Carvalho, R. R.; Rojas-Medar, M. A.

    2015-06-01

    We consider the motion of a viscous incompressible fluid consisting of two components with a diffusion effect obeying Fick's law in ℝ3. We prove that there exists a small time interval where the fluid variables converge uniformly as the viscosity and the diffusion coefficient tend to zero. In the limit, we find a non-homogeneous, non-viscous, incompressible fluid governed by an Euler-like system.

  1. The small ice cap instability in diffusive climate models

    NASA Technical Reports Server (NTRS)

    North, G. R.

    1984-01-01

    Simple climate models which invoke diffusive heat transport and ice cap albedo feedback have equilibrium solutions with no stable ice cap smaller than a radius of about 20 deg on a great circle. Attention is presently given to a solution of this phenomenon which is physically appealing. The ice-free solution has a thermal minimum, and if the minimum temperature is just above the critical value for ice formation, then the artificial addition of a patch of ice leads to a widespread depression of the temperature below the critical freezing temperature. A second stable solution will then exist whose spatial extent is determined by the range of the influence function of a point sink of heat, due to the albedo shift in the patch.

  2. Individual differences in emotion word processing: A diffusion model analysis.

    PubMed

    Mueller, Christina J; Kuchinke, Lars

    2016-06-01

    The exploratory study investigated individual differences in implicit processing of emotional words in a lexical decision task. A processing advantage for positive words was observed, and differences between happy and fear-related words in response times were predicted by individual differences in specific variables of emotion processing: Whereas more pronounced goal-directed behavior was related to a specific slowdown in processing of fear-related words, the rate of spontaneous eye blinks (indexing brain dopamine levels) was associated with a processing advantage of happy words. Estimating diffusion model parameters revealed that the drift rate (rate of information accumulation) captures unique variance of processing differences between happy and fear-related words, with highest drift rates observed for happy words. Overall emotion recognition ability predicted individual differences in drift rates between happy and fear-related words. The findings emphasize that a significant amount of variance in emotion processing is explained by individual differences in behavioral data. PMID:26860908

  3. Energy efficient engine diffuser/combustor model technology

    NASA Technical Reports Server (NTRS)

    Gardner, W.

    1980-01-01

    A full scale, full annular diffuser/combustor model test rig was tested to investigate how configurational changes affect pressure loss and flow separation characteristics. The rig was characterized by five major modules: inlet; prediffuser; strut; simulated combustor; and full combustor. The prediffuser featured a short, curved wall dump design. Performance goals included: (1) a separation-free prediffuser flow field; (2) total pressure loss limited to 3.0 percent in the prediffuser and shrouds; and (3) an overall section pressure loss of 5.5 percent P sub T3 at the design airflow distribution. The results indicated that the prediffuser configurations operate well within the program goals for pressure loss and demonstrate separation free operation over a wide range of inlet conditions.

  4. Directional entropy based model for diffusivity-driven tumor growth.

    PubMed

    de Oliveira, Marcelo E; Neto, Luiz M G

    2016-04-01

    In this work, we present and investigate a multiscale model to simulate 3D growth of glioblastomas (GBMs) that incorporates features of the tumor microenvironment and derives macroscopic growth laws from microscopic tissue structure information. We propose a normalized version of the Shannon entropy as an alternative measure of the directional anisotropy for an estimation of the diffusivity tensor in cases where the latter is unknown. In our formulation, the tumor aggressiveness and morphological behavior is tissue-type dependent, i.e. alterations in white and gray matter regions (which can e.g. be induced by normal aging in healthy individuals or neurodegenerative diseases) affect both tumor growth rates and their morphology. The feasibility of this new conceptual approach is supported by previous observations that the fractal dimension, which correlates with the Shannon entropy we calculate, is a quantitative parameter that characterizes the variability of brain tissue, thus, justifying the further evaluation of this new conceptual approach. PMID:27105991

  5. A diffuse interface model of grain boundary faceting

    NASA Astrophysics Data System (ADS)

    Abdeljawad, F.; Medlin, D. L.; Zimmerman, J. A.; Hattar, K.; Foiles, S. M.

    2016-06-01

    Interfaces, free or internal, greatly influence the physical properties and stability of materials microstructures. Of particular interest are the processes that occur due to anisotropic interfacial properties. In the case of grain boundaries (GBs) in metals, several experimental observations revealed that an initially flat GB may facet into hill-and-valley structures with well defined planes and corners/edges connecting them. Herein, we present a diffuse interface model that is capable of accounting for strongly anisotropic GB properties and capturing the formation of hill-and-valley morphologies. The hallmark of our approach is the ability to independently examine the various factors affecting GB faceting and subsequent facet coarsening. More specifically, our formulation incorporates higher order expansions to account for the excess energy due to facet junctions and their non-local interactions. As a demonstration of the modeling capability, we consider the Σ5 <001 > tilt GB in body-centered-cubic iron, where faceting along the {210} and {310} planes was experimentally observed. Atomistic calculations were utilized to determine the inclination-dependent GB energy, which was then used as an input in our model. Linear stability analysis and simulation results highlight the role of junction energy and associated non-local interactions on the resulting facet length scales. Broadly speaking, our modeling approach provides a general framework to examine the microstructural stability of polycrystalline systems with highly anisotropic GBs.

  6. Anomalous diffusion in neutral evolution of model proteins.

    PubMed

    Nelson, Erik D; Grishin, Nick V

    2015-06-01

    Protein evolution is frequently explored using minimalist polymer models, however, little attention has been given to the problem of structural drift, or diffusion. Here, we study neutral evolution of small protein motifs using an off-lattice heteropolymer model in which individual monomers interact as low-resolution amino acids. In contrast to most earlier models, both the length and folded structure of the polymers are permitted to change. To describe structural change, we compute the mean-square distance (MSD) between monomers in homologous folds separated by n neutral mutations. We find that structural change is episodic, and, averaged over lineages (for example, those extending from a single sequence), exhibits a power-law dependence on n. We show that this exponent depends on the alignment method used, and we analyze the distribution of waiting times between neutral mutations. The latter are more disperse than for models required to maintain a specific fold, but exhibit a similar power-law tail. PMID:26172648

  7. Stochastic fire-diffuse-fire model with realistic cluster dynamics

    NASA Astrophysics Data System (ADS)

    Calabrese, Ana; Fraiman, Daniel; Zysman, Daniel; Ponce Dawson, Silvina

    2010-09-01

    Living organisms use waves that propagate through excitable media to transport information. Ca2+ waves are a paradigmatic example of this type of processes. A large hierarchy of Ca2+ signals that range from localized release events to global waves has been observed in Xenopus laevis oocytes. In these cells, Ca2+ release occurs trough inositol 1,4,5-trisphosphate receptors (IP3Rs) which are organized in clusters of channels located on the membrane of the endoplasmic reticulum. In this article we construct a stochastic model for a cluster of IP3R ’s that replicates the experimental observations reported in [D. Fraiman , Biophys. J. 90, 3897 (2006)10.1529/biophysj.105.075911]. We then couple this phenomenological cluster model with a reaction-diffusion equation, so as to have a discrete stochastic model for calcium dynamics. The model we propose describes the transition regimes between isolated release and steadily propagating waves as the IP3 concentration is increased.

  8. COMPARISON OF UNITED STATES AND RUSSIAN COMPLEX TERRAIN DIFFUSION MODELS DEVELOPED FOR REGULATORY APPLICATIONS

    EPA Science Inventory

    The theoretical bases and computational techniques are presented for U.S. and Russian complex terrain diffusion models developed for engineering applications. hile the U.S. model is based on the modified Gaussian diffusion model, the Russian model is based on the analytical appro...

  9. NASA/MSFC multilayer diffusion models and computer programs, version 5

    NASA Technical Reports Server (NTRS)

    Dumbauld, R. K.; Bjorklund, J. R.

    1975-01-01

    The transport and diffusion models and algorithms developed for use by NASA in predicting concentrations and dosages downwind from normal and abnormal launches of rocket vehicles are described along with the associated computer programs for use in performing the calculations. Topics discussed include: the mathematical specifications and procedures used in the Preprocessor Program to calculate rocket exhaust cloud rise, cloud dimensions, and other input parameters to the transport and diffusion models; the revised mathematical specifications for the Multilayer Diffusion Models; users' instructions for implementing the Preprocessor and Multilayer Diffusion Models Programs; and worked example problems illustrating the use of the models and computer programs.

  10. Protein folding dynamics: the diffusion-collision model and experimental data.

    PubMed Central

    Karplus, M.; Weaver, D. L.

    1994-01-01

    The diffusion-collision model of protein folding is assessed. A description is given of the qualitative aspects and quantitative results of the diffusion-collision model and their relation to available experimental data. We consider alternative mechanisms for folding and point out their relationship to the diffusion-collision model. We show that the diffusion-collision model is supported by a growing body of experimental and theoretical evidence, and we outline future directions for developing the model and its applications. PMID:8003983

  11. Effects of Isometric Scaling on Vertical Jumping Performance

    PubMed Central

    Bobbert, Maarten F.

    2013-01-01

    Jump height, defined as vertical displacement in the airborne phase, depends on vertical takeoff velocity. For centuries, researchers have speculated on how jump height is affected by body size and many have adhered to what has come to be known as Borelli’s law, which states that jump height does not depend on body size per se. The underlying assumption is that the amount of work produced per kg body mass during the push-off is independent of size. However, if a big body is isometrically downscaled to a small body, the latter requires higher joint angular velocities to achieve a given takeoff velocity and work production will be more impaired by the force-velocity relationship of muscle. In the present study, the effects of pure isometric scaling on vertical jumping performance were investigated using a biologically realistic model of the human musculoskeletal system. The input of the model, muscle stimulation over time, was optimized using jump height as criterion. It was found that when the human model was miniaturized to the size of a mouse lemur, with a mass of about one-thousandth that of a human, jump height dropped from 40 cm to only 6 cm, mainly because of the force-velocity relationship. In reality, mouse lemurs achieve jump heights of about 33 cm. By implication, the unfavourable effects of the small body size of mouse lemurs on jumping performance must be counteracted by favourable effects of morphological and physiological adaptations. The same holds true for other small jumping animals. The simulations for the first time expose and explain the sheer magnitude of the isolated effects of isometric downscaling on jumping performance, to be counteracted by morphological and physiological adaptations. PMID:23936494

  12. Nonstandard jump functions for radially symmetric shock waves

    SciTech Connect

    Baty, Roy S.; Tucker, Don H.; Stanescu, Dan

    2008-10-01

    Nonstandard analysis is applied to derive generalized jump functions for radially symmetric, one-dimensional, magnetogasdynamic shock waves. It is assumed that the shock wave jumps occur on infinitesimal intervals, and the jump functions for the physical parameters occur smoothly across these intervals. Locally integrable predistributions of the Heaviside function are used to model the flow variables across a shock wave. The equations of motion expressed in nonconservative form are then applied to derive unambiguous relationships between the jump functions for the physical parameters for two families of self-similar flows. It is shown that the microstructures for these families of radially symmetric, magnetogasdynamic shock waves coincide in a nonstandard sense for a specified density jump function

  13. Nonstandard jump functions for radically symmetric shock waves

    SciTech Connect

    Baty, Roy S; Tucker, Don H; Stanescu, Dan

    2008-01-01

    Nonstandard analysis is applied to derive generalized jump functions for radially symmetric, one-dimensional, magnetogasdynamic shock waves. It is assumed that the shock wave jumps occur on infinitesimal intervals and the jump functions for the physical parameters occur smoothly across these intervals. Locally integrable predistributions of the Heaviside function are used to model the flow variables across a shock wave. The equations of motion expressed in nonconservative form are then applied to derive unambiguous relationships between the jump functions for the physical parameters for two families of self-similar flows. It is shown that the microstructures for these families of radially symmetric, magnetogasdynamic shock waves coincide in a nonstandard sense for a specified density jump function.

  14. An efficient method for model refinement in diffuse optical tomography

    NASA Astrophysics Data System (ADS)

    Zirak, A. R.; Khademi, M.

    2007-11-01

    Diffuse optical tomography (DOT) is a non-linear, ill-posed, boundary value and optimization problem which necessitates regularization. Also, Bayesian methods are suitable owing to measurements data are sparse and correlated. In such problems which are solved with iterative methods, for stabilization and better convergence, the solution space must be small. These constraints subject to extensive and overdetermined system of equations which model retrieving criteria specially total least squares (TLS) must to refine model error. Using TLS is limited to linear systems which is not achievable when applying traditional Bayesian methods. This paper presents an efficient method for model refinement using regularized total least squares (RTLS) for treating on linearized DOT problem, having maximum a posteriori (MAP) estimator and Tikhonov regulator. This is done with combination Bayesian and regularization tools as preconditioner matrices, applying them to equations and then using RTLS to the resulting linear equations. The preconditioning matrixes are guided by patient specific information as well as a priori knowledge gained from the training set. Simulation results illustrate that proposed method improves the image reconstruction performance and localize the abnormally well.

  15. Reaction–diffusion model of hair-bundle morphogenesis

    PubMed Central

    Jacobo, Adrian; Hudspeth, A. J.

    2014-01-01

    The hair bundle, an apical specialization of the hair cell composed of several rows of regularly organized stereocilia and a kinocilium, is essential for mechanotransduction in the ear. Its precise organization allows the hair bundle to convert mechanical stimuli to electrical signals; mutations that alter the bundle’s morphology often cause deafness. However, little is known about the proteins involved in the process of morphogenesis and how the structure of the bundle arises through interactions between these molecules. We present a mathematical model based on simple reaction–diffusion mechanisms that can reproduce the shape and organization of the hair bundle. This model suggests that the boundary of the cell and the kinocilium act as signaling centers that establish the bundle’s shape. The interaction of two proteins forms a hexagonal Turing pattern—a periodic modulation of the concentrations of the morphogens, sustained by local activation and long-range inhibition of the reactants—that sets a blueprint for the location of the stereocilia. Finally we use this model to predict how different alterations to the system might impact the shape and organization of the hair bundle. PMID:25313064

  16. Collective Diffusion Model for Ion Conduction through Microscopic Channels

    PubMed Central

    Liu, Yingting; Zhu, Fangqiang

    2013-01-01

    Ion conduction through microscopic channels is of central importance in both biology and nanotechnology. To better understand the current-voltage (I-V) dependence of ion channels, here we describe and prove a collective diffusion model that quantitatively relates the spontaneous ion permeation at equilibrium to the stationary ionic fluxes driven by small voltages. The model makes it possible to determine the channel conductance in the linear I-V range from equilibrium simulations without the application of a voltage. To validate the theory, we perform molecular-dynamics simulations on two channels—a conical-shaped nanopore and the transmembrane pore of an α-hemolysin—under both equilibrium and nonequilibrium conditions. The simulations reveal substantial couplings between the motions of cations and anions, which are effectively captured by the collective coordinate in the model. Although the two channels exhibit very different linear ranges in the I-V curves, in both cases the channel conductance at small voltages is in reasonable agreement with the prediction from the equilibrium simulation. The simulations also suggest that channel charges, rather than geometric asymmetry, play a more prominent role in current rectification. PMID:23442858

  17. Diffusively anisotropic model for the deflagration-to-detonation transition

    NASA Astrophysics Data System (ADS)

    Kagan, Leonid; Sivashinsky, Gregory

    2014-03-01

    To elucidate the key mechanisms responsible for the transition from deflagrative to detonative combustion in smooth-walled channels, a reactive flow with anisotropic thermal and molecular diffusivities is considered. Setting the transverse diffusivities large compared to longitudinal diffusivities, the initially formed deflagration (despite no-slip boundary conditions) appears to be nearly planar and not accelerating. This, however, does not prevent its eventual abrupt transition to Chapman-Jouguet detonation.

  18. Estimating networks with jumps

    PubMed Central

    Kolar, Mladen; Xing, Eric P.

    2013-01-01

    We study the problem of estimating a temporally varying coefficient and varying structure (VCVS) graphical model underlying data collected over a period of time, such as social states of interacting individuals or microarray expression profiles of gene networks, as opposed to i.i.d. data from an invariant model widely considered in current literature of structural estimation. In particular, we consider the scenario in which the model evolves in a piece-wise constant fashion. We propose a procedure that estimates the structure of a graphical model by minimizing the temporally smoothed L1 penalized regression, which allows jointly estimating the partition boundaries of the VCVS model and the coefficient of the sparse precision matrix on each block of the partition. A highly scalable proximal gradient method is proposed to solve the resultant convex optimization problem; and the conditions for sparsistent estimation and the convergence rate of both the partition boundaries and the network structure are established for the first time for such estimators. PMID:25013533

  19. HLW glass dissolution in the presence of magnesium carbonate: Diffusion cell experiment and coupled modeling of diffusion and geochemical interactions

    NASA Astrophysics Data System (ADS)

    Debure, Mathieu; De Windt, Laurent; Frugier, Pierre; Gin, Stéphane

    2013-11-01

    The influence of diffusion of reactive species in aqueous solutions on the alteration rate of borosilicate glass of nuclear interest in the presence of magnesium carbonate (hydromagnesite: 4MgCO3·Mg(OH)2·4H2O) is investigated together with the ability of coupled chemistry/transport models to simulate the processes involved. Diffusion cells in which the solids are separated by an inert stainless steel sintered filter were used to establish parameters for direct comparison with batch experiments in which solids are intimately mixed. The chemistry of the solution and solid phases was monitored over time by various analytical techniques including ICP-AES, XRD, and SEM. The primary mechanism controlling the geochemical evolution of the system remains the consumption of silicon from the glass by precipitation of magnesium silicates. The solution chemistry and the dissolution and precipitation of solid phases are correctly described by 2D modeling with the GRAAL model implemented in the HYTEC reactive transport code. The spatial symmetry of the boron concentrations in both compartments of the cells results from dissolution coupled with simple diffusion, whereas the spatial asymmetry of the silicon and magnesium concentrations is due to strong coupling between dissolution, diffusion, and precipitation of secondary phases. A sensitivity analysis on the modeling of glass alteration shows that the choice of these phases and their thermodynamic constants have only a moderate impact whereas the thickness of the filter has a greater barrier effect.

  20. Hydraulic jumps with upstream shear

    NASA Astrophysics Data System (ADS)

    Ogden, Kelly; Helfrich, Karl

    2013-11-01

    Hydraulic jumps in flows with background shear are investigated, motivated by applications such as the flow over sills in Knight Inlet and the Pre-Bosphorus Channel. The full solution space and allowable solutions to several two-layer theories for hydraulic jumps with upstream shear are identified. The two-layer theories considered, including a recent theory by Borden et al. (JFM, 2012), are distinguished by how dissipation is partitioned between the layers. It is found that upstream shear with a faster and thinner lower layer causes an increase in bore speed, for a given jump height. Further, these two-layer solutions only exist for a limited range of upstream shear. 2D numerical simulations are conducted, guided by the two-layer theory solution space, and the results are compared to the theories. The simulations show the qualitative types of hydraulic transitions that occur, including undular bores, fully turbulent jumps, and conjugate state-like solutions; the type depends on the jump height and upstream shear for fixed upstream layer depths. Numerical simulations are used to investigate the mixing. Finally, a few 3D numerical simulations were made and are found to be consistent with the 2D results.

  1. Diffusion Models of the Flanker Task: Discrete versus Gradual Attentional Selection

    ERIC Educational Resources Information Center

    White, Corey N.; Ratcliff, Roger; Starns, Jeffrey J.

    2011-01-01

    The present study tested diffusion models of processing in the flanker task, in which participants identify a target that is flanked by items that indicate the same (congruent) or opposite response (incongruent). Single- and dual-process flanker models were implemented in a diffusion-model framework and tested against data from experiments that…

  2. Applicability of an Adoption-Diffusion Model to Resource Conservation: A Supporting View.

    ERIC Educational Resources Information Center

    Nowak, Peter J.

    At issue is the extent to which one can employ an adoption and diffusion of innovations model(s) to explain and predict the use of soil and water conservation practices. Much, however, can be gained from using models in this area. Four dimensions that should be present in any research design if it is to account for adoption and diffusion of…

  3. A diffuse interface model of grain boundary faceting

    NASA Astrophysics Data System (ADS)

    Abdeljawad, Fadi; Medlin, Douglas; Zimmerman, Jonathan; Hattar, Khalid; Foiles, Stephen

    Incorporating anisotropy into thermodynamic treatments of interfaces dates back to over a century ago. For a given orientation of two abutting grains in a pure metal, depressions in the grain boundary (GB) energy may exist as a function of GB inclination, defined by the plane normal. Therefore, an initially flat GB may facet resulting in a hill-and-valley structure. Herein, we present a diffuse interface model of GB faceting that is capable of capturing anisotropic GB energies and mobilities, and accounting for the excess energy due to facet junctions and their non-local interactions. The hallmark of our approach is the ability to independently examine the role of each of the interface properties on the faceting behavior. As a demonstration, we consider the Σ 5 < 001 > tilt GB in iron, where faceting along the { 310 } and { 210 } planes was experimentally observed. Linear stability analysis and numerical examples highlight the role of junction energy and associated non-local interactions on the resulting facet length scales. On the whole, our modeling approach provides a general framework to examine the spatio-temporal evolution of highly anisotropic GBs in polycrystalline metals. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. DOE's National Nuclear Security Administration under Contract DE-AC04-94AL85000.

  4. Subgrid models for mass and thermal diffusion in turbulent mixing

    SciTech Connect

    Sharp, David H; Lim, Hyunkyung; Li, Xiao - Lin; Gilmm, James G

    2008-01-01

    We are concerned with the chaotic flow fields of turbulent mixing. Chaotic flow is found in an extreme form in multiply shocked Richtmyer-Meshkov unstable flows. The goal of a converged simulation for this problem is twofold: to obtain converged solutions for macro solution features, such as the trajectories of the principal shock waves, mixing zone edges, and mean densities and velocities within each phase, and also for such micro solution features as the joint probability distributions of the temperature and species concentration. We introduce parameterized subgrid models of mass and thermal diffusion, to define large eddy simulations (LES) that replicate the micro features observed in the direct numerical simulation (DNS). The Schmidt numbers and Prandtl numbers are chosen to represent typical liquid, gas and plasma parameter values. Our main result is to explore the variation of the Schmidt, Prandtl and Reynolds numbers by three orders of magnitude, and the mesh by a factor of 8 per linear dimension (up to 3200 cells per dimension), to allow exploration of both DNS and LES regimes and verification of the simulations for both macro and micro observables. We find mesh convergence for key properties describing the molecular level of mixing, including chemical reaction rates between the distinct fluid species. We find results nearly independent of Reynolds number for Re 300, 6000, 600K . Methodologically, the results are also new. In common with the shock capturing community, we allow and maintain sharp solution gradients, and we enhance these gradients through use of front tracking. In common with the turbulence modeling community, we include subgrid scale models with no adjustable parameters for LES. To the authors' knowledge, these two methodologies have not been previously combined. In contrast to both of these methodologies, our use of Front Tracking, with DNS or LES resolution of the momentum equation at or near the Kolmogorov scale, but without resolving the

  5. Optimizing the Distribution of Leg Muscles for Vertical Jumping

    PubMed Central

    Wong, Jeremy D.; Bobbert, Maarten F.; van Soest, Arthur J.; Gribble, Paul L.; Kistemaker, Dinant A.

    2016-01-01

    A goal of biomechanics and motor control is to understand the design of the human musculoskeletal system. Here we investigated human functional morphology by making predictions about the muscle volume distribution that is optimal for a specific motor task. We examined a well-studied and relatively simple human movement, vertical jumping. We investigated how high a human could jump if muscle volume were optimized for jumping, and determined how the optimal parameters improve performance. We used a four-link inverted pendulum model of human vertical jumping actuated by Hill-type muscles, that well-approximates skilled human performance. We optimized muscle volume by allowing the cross-sectional area and muscle fiber optimum length to be changed for each muscle, while maintaining constant total muscle volume. We observed, perhaps surprisingly, that the reference model, based on human anthropometric data, is relatively good for vertical jumping; it achieves 90% of the jump height predicted by a model with muscles designed specifically for jumping. Alteration of cross-sectional areas—which determine the maximum force deliverable by the muscles—constitutes the majority of improvement to jump height. The optimal distribution results in large vastus, gastrocnemius and hamstrings muscles that deliver more work, while producing a kinematic pattern essentially identical to the reference model. Work output is increased by removing muscle from rectus femoris, which cannot do work on the skeleton given its moment arm at the hip and the joint excursions during push-off. The gluteus composes a disproportionate amount of muscle volume and jump height is improved by moving it to other muscles. This approach represents a way to test hypotheses about optimal human functional morphology. Future studies may extend this approach to address other morphological questions in ethological tasks such as locomotion, and feature other sets of parameters such as properties of the skeletal

  6. Optimizing the Distribution of Leg Muscles for Vertical Jumping.

    PubMed

    Wong, Jeremy D; Bobbert, Maarten F; van Soest, Arthur J; Gribble, Paul L; Kistemaker, Dinant A

    2016-01-01

    A goal of biomechanics and motor control is to understand the design of the human musculoskeletal system. Here we investigated human functional morphology by making predictions about the muscle volume distribution that is optimal for a specific motor task. We examined a well-studied and relatively simple human movement, vertical jumping. We investigated how high a human could jump if muscle volume were optimized for jumping, and determined how the optimal parameters improve performance. We used a four-link inverted pendulum model of human vertical jumping actuated by Hill-type muscles, that well-approximates skilled human performance. We optimized muscle volume by allowing the cross-sectional area and muscle fiber optimum length to be changed for each muscle, while maintaining constant total muscle volume. We observed, perhaps surprisingly, that the reference model, based on human anthropometric data, is relatively good for vertical jumping; it achieves 90% of the jump height predicted by a model with muscles designed specifically for jumping. Alteration of cross-sectional areas-which determine the maximum force deliverable by the muscles-constitutes the majority of improvement to jump height. The optimal distribution results in large vastus, gastrocnemius and hamstrings muscles that deliver more work, while producing a kinematic pattern essentially identical to the reference model. Work output is increased by removing muscle from rectus femoris, which cannot do work on the skeleton given its moment arm at the hip and the joint excursions during push-off. The gluteus composes a disproportionate amount of muscle volume and jump height is improved by moving it to other muscles. This approach represents a way to test hypotheses about optimal human functional morphology. Future studies may extend this approach to address other morphological questions in ethological tasks such as locomotion, and feature other sets of parameters such as properties of the skeletal

  7. The Jumps: Contemporary Theory, Technique and Training.

    ERIC Educational Resources Information Center

    Wilt, Fred, Ed.

    This collection of essays offers a cross section of modern theory and progress in the training of the four "jumping" events in track and field athletics--pole vault, high jump, long jump, and triple jump. It is written for athletic coaches in these specialties. Articles range from general and historical reviews of technique and training matters to…

  8. Regularized lattice Boltzmann model for a class of convection-diffusion equations.

    PubMed

    Wang, Lei; Shi, Baochang; Chai, Zhenhua

    2015-10-01

    In this paper, a regularized lattice Boltzmann model for a class of nonlinear convection-diffusion equations with variable coefficients is proposed. The main idea of the present model is to introduce a set of precollision distribution functions that are defined only in terms of macroscopic moments. The Chapman-Enskog analysis shows that the nonlinear convection-diffusion equations can be recovered correctly. Numerical tests, including Fokker-Planck equations, Buckley-Leverett equation with discontinuous initial function, nonlinear convection-diffusion equation with anisotropic diffusion, are carried out to validate the present model, and the results show that the present model is more accurate than some available lattice Boltzmann models. It is also demonstrated that the present model is more stable than the traditional single-relaxation-time model for the nonlinear convection-diffusion equations. PMID:26565368

  9. Monte Carlo Modeling of Diffuse Scattering from Single Crystals: The Program ZMC

    SciTech Connect

    Goossens, D.J.; Heerdegen, A.P.; Chan, E.J.; Welberry, T.R.

    2012-04-30

    Diffuse scattering probes the local ordering in a crystal, whereas Bragg peaks are descriptive of the average long-range ordering. The population of local configurations can be explored by modeling the three-dimensional distribution of diffuse scattering. Local configurations are not constrained by the average crystallographic symmetry, so one way of modeling diffuse scattering is by modeling a disordered (short-range-ordered) structure and then calculating its diffuse scattering. The structure must contain enough unit cells to give a statistically valid model of the populations of local configurations, and so requirements for a program to model this ordering are very different from programs that model average crystal structures (used to fit the Bragg diffraction). ZMC is a program that has been developed to model diffuse scattering, particularly from molecular crystals. The strategies used to tackle the problem and the way in which they are implemented will be discussed.

  10. Investigation of the best model to characterize diffuse correlation spectroscopy measurements acquired directly on the brain

    NASA Astrophysics Data System (ADS)

    Verdecchia, K.; Diop, M.; St. Lawrence, K.

    2015-03-01

    Diffuse correlation spectroscopy (DCS) is a non-invasive optical technique capable of monitoring tissue perfusion changes, particularly in the brain. The normalized temporal intensity autocorrelation function generated by DCS is typically characterized by assuming that the movement of erythrocytes can be modeled as a Brownian diffusion-like process instead of the expected random flow model. Carp et al. [Biomedical Optics Express, 2011] proposed a hybrid model, referred to as the hydrodynamic diffusion model, to capture both the random ballistic and diffusive nature of erythrocyte motion. The purpose of this study was to compare how well the Brownian diffusion and the hydrodynamic diffusion models characterized DCS data acquired directly on the brain, avoiding the confounding effects of scalp and skull. Data were acquired from seven pigs during normocapnia (39.9 +/- 0.7 mmHg) and hypocapnia (22.1 +/- 1.6 mmHg) with the DCS fibers placed 7 mm apart, directly on the cerebral cortex. The hydrodynamic diffusion model was found to provide a consistently better fit to the autocorrelation functions compared to the Brownian diffusion model and was less sensitive to the chosen start and end time points used in the fitting. However, the decrease in cerebral blood flow from normocapnia to hypocapnia determined was similar for the two models (-42.6 +/- 8.6 % for the Brownian model and -42.2 +/- 10.2 % for the hydrodynamic model), suggesting that the latter is reasonable for monitoring flow changes.

  11. Reaction time in ankle movements: a diffusion model analysis

    PubMed Central

    Michmizos, Konstantinos P.; Krebs, Hermano Igo

    2015-01-01

    Reaction time (RT) is one of the most commonly used measures of neurological function and dysfunction. Despite the extensive studies on it, no study has ever examined the RT in the ankle. Twenty-two subjects were recruited to perform simple, 2- and 4-choice RT tasks by visually guiding a cursor inside a rectangular target with their ankle. RT did not change with spatial accuracy constraints imposed by different target widths in the direction of the movement. RT increased as a linear function of potential target stimuli, as would be predicted by Hick–Hyman law. Although the slopes of the regressions were similar, the intercept in dorsal–plantar (DP) direction was significantly smaller than the intercept in inversion–eversion (IE) direction. To explain this difference, we used a hierarchical Bayesian estimation of the Ratcliff's (Psychol Rev 85:59, 1978) diffusion model parameters and divided processing time into cognitive components. The model gave a good account of RTs, their distribution and accuracy values, and hence provided a testimony that the non-decision processing time (overlap of posterior distributions between DP and IE < 0.045), the boundary separation (overlap of the posterior distributions < 0.1) and the evidence accumulation rate (overlap of the posterior distributions < 0.01) components of the RT accounted for the intercept difference between DP and IE. The model also proposed that there was no systematic change in non-decision processing time or drift rate when spatial accuracy constraints were altered. The results were in agreement with the memory drum hypothesis and could be further justified neurophysiologically by the larger innervation of the muscles controlling DP movements. This study might contribute to assessing deficits in sensorimotor control of the ankle and enlighten a possible target for correction in the framework of our on-going effort to develop robotic therapeutic interventions to the ankle of children with cerebral palsy

  12. Developing A Laser Shockwave Model For Characterizing Diffusion Bonded Interfaces

    SciTech Connect

    James A. Smith; Jeffrey M. Lacy; Barry H. Rabin

    2014-07-01

    12. Other advances in QNDE and related topics: Preferred Session Laser-ultrasonics Developing A Laser Shockwave Model For Characterizing Diffusion Bonded Interfaces 41st Annual Review of Progress in Quantitative Nondestructive Evaluation Conference QNDE Conference July 20-25, 2014 Boise Centre 850 West Front Street Boise, Idaho 83702 James A. Smith, Jeffrey M. Lacy, Barry H. Rabin, Idaho National Laboratory, Idaho Falls, ID ABSTRACT: The US National Nuclear Security Agency has a Global Threat Reduction Initiative (GTRI) which is assigned with reducing the worldwide use of high-enriched uranium (HEU). A salient component of that initiative is the conversion of research reactors from HEU to low enriched uranium (LEU) fuels. An innovative fuel is being developed to replace HEU. The new LEU fuel is based on a monolithic fuel made from a U-Mo alloy foil encapsulated in Al-6061 cladding. In order to complete the fuel qualification process, the laser shock technique is being developed to characterize the clad-clad and fuel-clad interface strengths in fresh and irradiated fuel plates. The Laser Shockwave Technique (LST) is being investigated to characterize interface strength in fuel plates. LST is a non-contact method that uses lasers for the generation and detection of large amplitude acoustic waves to characterize interfaces in nuclear fuel plates. However the deposition of laser energy into the containment layer on specimen’s surface is intractably complex. The shock wave energy is inferred from the velocity on the backside and the depth of the impression left on the surface from the high pressure plasma pulse created by the shock laser. To help quantify the stresses and strengths at the interface, a finite element model is being developed and validated by comparing numerical and experimental results for back face velocities and front face depressions with experimental results. This paper will report on initial efforts to develop a finite element model for laser

  13. FAST TRACK COMMUNICATION: The origin of Bohm diffusion, investigated by a comparison of different modelling methods

    NASA Astrophysics Data System (ADS)

    Bultinck, E.; Mahieu, S.; Depla, D.; Bogaerts, A.

    2010-07-01

    'Bohm diffusion' causes the electrons to diffuse perpendicularly to the magnetic field lines. However, its origin is not yet completely understood: low and high frequency electric field fluctuations are both named to cause Bohm diffusion. The importance of including this process in a Monte Carlo (MC) model is demonstrated by comparing calculated ionization rates with particle-in-cell/Monte Carlo collisions (PIC/MCC) simulations. A good agreement is found with a Bohm diffusion parameter of 0.05, which corresponds well to experiments. Since the PIC/MCC method accounts for fast electric field fluctuations, we conclude that Bohm diffusion is caused by fast electric field phenomena.

  14. An electrodynamics-based model for ion diffusion in microbial polysaccharides.

    PubMed

    Liu, Chongxuan; Zachara, John M; Felmy, Andrew; Gorby, Yuri

    2004-10-10

    An electrodynamics-based model was formulated for simulation of ion diffusion in microbial polysaccharides. The fixed charges and electrostatic double layers that may associate with microbial polysaccharides and their effects on ion diffusion were explicitly built into the model. The model extends a common multicomponent ion diffusion formulation that is based on irreversible thermodynamics under a zero ionic charge flux condition, which is only applicable to the regions without fixed charges and electrostatic double layers. An efficient numerical procedure was presented to solve the differential equations in the model. The model well described key features of experimental observations of ion diffusion in negatively charged microbial polysaccharides including accelerated diffusive transport of cations, exclusion of anions, and increased rate of cation transport with increasing negative charge density. The simulated diffusive fluxes of cations and anions were consistent with a cation exchange diffusion concept in negatively charged polysaccharides at the interface of plant roots and soils; and the developed model allows to mathematically study such diffusion phenomena. An illustrative example was also provided to simulate dynamic behavior of ionic current during ion diffusion within a charged bacterial cell wall polysaccharide and the effects of the ionic current on the compression or expansion of the bacterial electrostatic double layer at the interface of the cell wall and bulk solution. PMID:15465305

  15. New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models.

    PubMed

    Poupon, Cyril; Rieul, Bernard; Kezele, Irina; Perrin, Muriel; Poupon, Fabrice; Mangin, Jean-François

    2008-12-01

    We present new diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models. The phantom design permits the application of imaging parameters that are typically employed in studies of the human brain. The phantoms were made of small-diameter acrylic fibers, chosen for their high hydrophobicity and flexibility that ensured good control of the phantom geometry. The polyurethane medium was filled under vacuum with an aqueous solution that was previously degassed, doped with gadolinium-tetraazacyclododecanetetraacetic acid (Gd-DOTA), and treated by ultrasonic waves. Two versions of such phantoms were manufactured and tested. The phantom's applicability was demonstrated on an analytical Q-ball model. Numerical simulations were performed to assess the accuracy of the phantom. The phantom data will be made accessible to the community with the objective of analyzing various HARDI models. PMID:19030160

  16. A generalized diffusion model for growth of nanoparticles synthesized by colloidal methods.

    PubMed

    Wen, Tianlong; Brush, Lucien N; Krishnan, Kannan M

    2014-04-01

    A nanoparticle growth model is developed to predict and guide the syntheses of monodisperse colloidal nanoparticles in the liquid phase. The model, without any a priori assumptions, is based on the Fick's law of diffusion, conservation of mass and the Gibbs-Thomson equation for crystal growth. In the limiting case, this model reduces to the same expression as the currently accepted model that requires the assumption of a diffusion layer around each nanoparticle. The present growth model bridges the two limiting cases of the previous model i.e. complete diffusion controlled and adsorption controlled growth of nanoparticles. Specifically, the results show that a monodispersion of nanoparticles can be obtained both with fast monomer diffusion and with surface reaction under conditions of small diffusivity to surface reaction constant ratio that results is growth 'focusing'. This comprehensive description of nanoparticle growth provides new insights and establishes the required conditions for fabricating monodisperse nanoparticles critical for a wide range of applications. PMID:24491334

  17. Nonstandard Analysis and Jump Conditions for Converging Shock Waves

    NASA Technical Reports Server (NTRS)

    Baty, Roy S.; Farassat, Fereidoun; Tucker, Don H.

    2008-01-01

    Nonstandard analysis is an area of modern mathematics which studies abstract number systems containing both infinitesimal and infinite numbers. This article applies nonstandard analysis to derive jump conditions for one-dimensional, converging shock waves in a compressible, inviscid, perfect gas. It is assumed that the shock thickness occurs on an infinitesimal interval and the jump functions in the thermodynamic and fluid dynamic parameters occur smoothly across this interval. Predistributions of the Heaviside function and the Dirac delta measure are introduced to model the flow parameters across a shock wave. The equations of motion expressed in nonconservative form are then applied to derive unambiguous relationships between the jump functions for the flow parameters.

  18. Modeling simple driving tasks with a one-boundary diffusion model.

    PubMed

    Ratcliff, Roger; Strayer, David

    2014-06-01

    A one-boundary diffusion model was applied to the data from two experiments in which subjects were performing a simple simulated driving task. In the first experiment, the same subjects were tested on two driving tasks using a PC-based driving simulator and the psychomotor vigilance test. The diffusion model fit the response time distributions for each task and individual subject well. Model parameters were found to correlate across tasks, which suggests that common component processes were being tapped in the three tasks. The model was also fit to a distracted driving experiment of Cooper and Strayer (Human Factors, 50, 893-902, 2008). Results showed that distraction altered performance by affecting the rate of evidence accumulation (drift rate) and/or increasing the boundary settings. This provides an interpretation of cognitive distraction whereby conversing on a cell phone diverts attention from the normal accumulation of information in the driving environment. PMID:24297620

  19. Drift diffusion model of reward and punishment learning in schizophrenia: Modeling and experimental data.

    PubMed

    Moustafa, Ahmed A; Kéri, Szabolcs; Somlai, Zsuzsanna; Balsdon, Tarryn; Frydecka, Dorota; Misiak, Blazej; White, Corey

    2015-09-15

    In this study, we tested reward- and punishment learning performance using a probabilistic classification learning task in patients with schizophrenia (n=37) and healthy controls (n=48). We also fit subjects' data using a Drift Diffusion Model (DDM) of simple decisions to investigate which components of the decision process differ between patients and controls. Modeling results show between-group differences in multiple components of the decision process. Specifically, patients had slower motor/encoding time, higher response caution (favoring accuracy over speed), and a deficit in classification learning for punishment, but not reward, trials. The results suggest that patients with schizophrenia adopt a compensatory strategy of favoring accuracy over speed to improve performance, yet still show signs of a deficit in learning based on negative feedback. Our data highlights the importance of applying fitting models (particularly drift diffusion models) to behavioral data. The implications of these findings are discussed relative to theories of schizophrenia and cognitive processing. PMID:26005124

  20. Froghopper-inspired direction-changing concept for miniature jumping robots.

    PubMed

    Jung, Gwang-Pil; Cho, Kyu-Jin

    2016-01-01

    To improve the maneuverability and agility of jumping robots, several researchers have studied steerable jumping mechanisms. This steering ability enables robots to reach a particular target by controlling their jumping direction. To this end, we propose a novel direction-changing concept for miniature jumping robots. The proposed concept allows robots to be steerable while exerting minimal effects on jumping performance. The key design principles were adopted from the froghopper's power-producing hind legs and the moment cancellation accomplished by synchronized leg operation. These principles were applied via a pair of symmetrically positioned legs and conventional gears, which were modeled on the froghopper's anatomy. Each leg has its own thrusting energy, which improves jumping performance by allowing the mechanism to thrust itself with both power-producing legs. Conventional gears were utilized to simultaneously operate the legs and cancel out the moments that they induce, which minimizes body spin. A prototype to verify the concept was built and tested by varying the initial jumping posture. Three jumping postures (synchronous, asynchronous, and single-legged) were tested to investigate how synchronization and moment cancelling affect jumping performance. The results show that synchronous jumping allows the mechanism to change direction from -40° to 40°, with an improved take-off speed. The proposed concept can only be steered in a limited range of directions, but it has potential for use in miniature jumping robots that can change jumping direction with a minimal drop in jumping performance. PMID:27625411

  1. Modeling bioluminescent photon transport in tissue based on Radiosity-diffusion model

    NASA Astrophysics Data System (ADS)

    Sun, Li; Wang, Pu; Tian, Jie; Zhang, Bo; Han, Dong; Yang, Xin

    2010-03-01

    Bioluminescence tomography (BLT) is one of the most important non-invasive optical molecular imaging modalities. The model for the bioluminescent photon propagation plays a significant role in the bioluminescence tomography study. Due to the high computational efficiency, diffusion approximation (DA) is generally applied in the bioluminescence tomography. But the diffusion equation is valid only in highly scattering and weakly absorbing regions and fails in non-scattering or low-scattering tissues, such as a cyst in the breast, the cerebrospinal fluid (CSF) layer of the brain and synovial fluid layer in the joints. A hybrid Radiosity-diffusion model is proposed for dealing with the non-scattering regions within diffusing domains in this paper. This hybrid method incorporates a priori information of the geometry of non-scattering regions, which can be acquired by magnetic resonance imaging (MRI) or x-ray computed tomography (CT). Then the model is implemented using a finite element method (FEM) to ensure the high computational efficiency. Finally, we demonstrate that the method is comparable with Mont Carlo (MC) method which is regarded as a 'gold standard' for photon transportation simulation.

  2. Revival of the Jumping Disc

    ERIC Educational Resources Information Center

    Ucke, C.; Schlichting, H-J.

    2009-01-01

    Snap discs made of bimetal have many technical applications as thermostats. Jumping discs are a toy version of such snap discs. Besides giving technical information, we describe physical investigations. We show especially how, through simple measurements and calculations, you can determine the initial speed ([approximately equal to]3.5 m…

  3. A Numerical Model for Coupling of Neutron Diffusion and Thermomechanics in Fast Burst Reactors

    SciTech Connect

    Samet Y. Kadioglu; Dana A. Knoll; Cassiano De Oliveira

    2008-11-01

    We develop a numerical model for coupling of neutron diffusion adn termomechanics in order to stimulate transient behavior of a fast burst reactor. The problem involves solving a set of non-linear different equations which approximate neutron diffusion, temperature change, and material behavior. With this equation set we will model the transition from a supercritical to subcritical state and possible mechanical vibration.

  4. Quantifying the effect of tissue deformation on diffusion-weighted MRI: a mathematical model and an efficient simulation framework applied to cardiac diffusion imaging.

    PubMed

    Mekkaoui, Imen; Moulin, Kevin; Croisille, Pierre; Pousin, Jerome; Viallon, Magalie

    2016-08-01

    Cardiac motion presents a major challenge in diffusion weighted MRI, often leading to large signal losses that necessitate repeated measurements. The diffusion process in the myocardium is difficult to investigate because of the unqualified sensitivity of diffusion measurements to cardiac motion. A rigorous mathematical formalism is introduced to quantify the effect of tissue motion in diffusion imaging. The presented mathematical model, based on the Bloch-Torrey equations, takes into account deformations according to the laws of continuum mechanics. Approximating this mathematical model by using finite elements method, numerical simulations can predict the sensitivity of the diffusion signal to cardiac motion. Different diffusion encoding schemes are considered and the diffusion weighted MR signals, computed numerically, are compared to available results in literature. Our numerical model can identify the existence of two time points in the cardiac cycle, at which the diffusion is unaffected by myocardial strain and cardiac motion. Of course, these time points depend on the type of diffusion encoding scheme. Our numerical results also show that the motion sensitivity of the diffusion sequence can be reduced by using either spin echo technique with acceleration motion compensation diffusion gradients or stimulated echo acquisition mode with unipolar and bipolar diffusion gradients. PMID:27385441

  5. Quantifying the effect of tissue deformation on diffusion-weighted MRI: a mathematical model and an efficient simulation framework applied to cardiac diffusion imaging

    NASA Astrophysics Data System (ADS)

    Mekkaoui, Imen; Moulin, Kevin; Croisille, Pierre; Pousin, Jerome; Viallon, Magalie

    2016-08-01

    Cardiac motion presents a major challenge in diffusion weighted MRI, often leading to large signal losses that necessitate repeated measurements. The diffusion process in the myocardium is difficult to investigate because of the unqualified sensitivity of diffusion measurements to cardiac motion. A rigorous mathematical formalism is introduced to quantify the effect of tissue motion in diffusion imaging. The presented mathematical model, based on the Bloch–Torrey equations, takes into account deformations according to the laws of continuum mechanics. Approximating this mathematical model by using finite elements method, numerical simulations can predict the sensitivity of the diffusion signal to cardiac motion. Different diffusion encoding schemes are considered and the diffusion weighted MR signals, computed numerically, are compared to available results in literature. Our numerical model can identify the existence of two time points in the cardiac cycle, at which the diffusion is unaffected by myocardial strain and cardiac motion. Of course, these time points depend on the type of diffusion encoding scheme. Our numerical results also show that the motion sensitivity of the diffusion sequence can be reduced by using either spin echo technique with acceleration motion compensation diffusion gradients or stimulated echo acquisition mode with unipolar and bipolar diffusion gradients.

  6. The Effect of Depth Jumps and Weight Training on Leg Strength and Vertical Jump.

    ERIC Educational Resources Information Center

    Clutch, David; And Others

    1983-01-01

    Two experiments examined the results of depth jumping programs to determine: (1) whether certain depth jumping routines, when combined with weight training, are better than others; and (2) the effect of depth jumping on athletes already in training. Results indicated that depth jumping is effective, but no more so than regular jumping routines.…

  7. Boundedness in a chemotaxis-haptotaxis model with nonlinear diffusion

    NASA Astrophysics Data System (ADS)

    Li, Yan; Lankeit, Johannes

    2016-05-01

    This article deals with an initial-boundary value problem for the coupled chemotaxis-haptotaxis system with nonlinear diffusion under homogeneous Neumann boundary conditions in a bounded smooth domain Ω \\subset {{{R}}n} , n  =  2, 3, 4, where χ,ξ and μ are given nonnegative parameters. The diffusivity D(u) is assumed to satisfy D(u)≥slant δ {{u}m-1} for all u  >  0 with some δ >0 . It is proved that for sufficiently regular initial data global bounded solutions exist whenever m>2-\\frac{2}{n} . For the case of non-degenerate diffusion (i.e. D(0)  >  0) the solutions are classical; for the case of possibly degenerate diffusion (D(0)≥slant 0 ), the existence of bounded weak solutions is shown.

  8. Diffusion-controlled reactions modeling in Geant4-DNA

    NASA Astrophysics Data System (ADS)

    Karamitros, M.; Luan, S.; Bernal, M. A.; Allison, J.; Baldacchino, G.; Davidkova, M.; Francis, Z.; Friedland, W.; Ivantchenko, V.; Ivantchenko, A.; Mantero, A.; Nieminem, P.; Santin, G.; Tran, H. N.; Stepan, V.; Incerti, S.

    2014-10-01

    Context Under irradiation, a biological system undergoes a cascade of chemical reactions that can lead to an alteration of its normal operation. There are different types of radiation and many competing reactions. As a result the kinetics of chemical species is extremely complex. The simulation becomes then a powerful tool which, by describing the basic principles of chemical reactions, can reveal the dynamics of the macroscopic system. To understand the dynamics of biological systems under radiation, since the 80s there have been on-going efforts carried out by several research groups to establish a mechanistic model that consists in describing all the physical, chemical and biological phenomena following the irradiation of single cells. This approach is generally divided into a succession of stages that follow each other in time: (1) the physical stage, where the ionizing particles interact directly with the biological material; (2) the physico-chemical stage, where the targeted molecules release their energy by dissociating, creating new chemical species; (3) the chemical stage, where the new chemical species interact with each other or with the biomolecules; (4) the biological stage, where the repairing mechanisms of the cell come into play. This article focuses on the modeling of the chemical stage. Method This article presents a general method of speeding-up chemical reaction simulations in fluids based on the Smoluchowski equation and Monte-Carlo methods, where all molecules are explicitly simulated and the solvent is treated as a continuum. The model describes diffusion-controlled reactions. This method has been implemented in Geant4-DNA. The keys to the new algorithm include: (1) the combination of a method to compute time steps dynamically with a Brownian bridge process to account for chemical reactions, which avoids costly fixed time step simulations; (2) a k-d tree data structure for quickly locating, for a given molecule, its closest reactants. The

  9. Diffusion-controlled reactions modeling in Geant4-DNA

    SciTech Connect

    Karamitros, M.; Luan, S.; Bernal, M.A.; Allison, J.; Baldacchino, G.; Davidkova, M.; Francis, Z.; Friedland, W.; Ivantchenko, V.; Ivantchenko, A.; Mantero, A.; Nieminem, P.; Santin, G.; Tran, H.N.; Stepan, V.; Incerti, S.

    2014-10-01

    Context Under irradiation, a biological system undergoes a cascade of chemical reactions that can lead to an alteration of its normal operation. There are different types of radiation and many competing reactions. As a result the kinetics of chemical species is extremely complex. The simulation becomes then a powerful tool which, by describing the basic principles of chemical reactions, can reveal the dynamics of the macroscopic system. To understand the dynamics of biological systems under radiation, since the 80s there have been on-going efforts carried out by several research groups to establish a mechanistic model that consists in describing all the physical, chemical and biological phenomena following the irradiation of single cells. This approach is generally divided into a succession of stages that follow each other in time: (1) the physical stage, where the ionizing particles interact directly with the biological material; (2) the physico-chemical stage, where the targeted molecules release their energy by dissociating, creating new chemical species; (3) the chemical stage, where the new chemical species interact with each other or with the biomolecules; (4) the biological stage, where the repairing mechanisms of the cell come into play. This article focuses on the modeling of the chemical stage. Method This article presents a general method of speeding-up chemical reaction simulations in fluids based on the Smoluchowski equation and Monte-Carlo methods, where all molecules are explicitly simulated and the solvent is treated as a continuum. The model describes diffusion-controlled reactions. This method has been implemented in Geant4-DNA. The keys to the new algorithm include: (1) the combination of a method to compute time steps dynamically with a Brownian bridge process to account for chemical reactions, which avoids costly fixed time step simulations; (2) a k–d tree data structure for quickly locating, for a given molecule, its closest reactants. The

  10. Field measurements in unwadeable natural hydraulic jumps

    NASA Astrophysics Data System (ADS)

    Valle, B.; Pasternack, G.

    2003-04-01

    Recent research in fluvial geomorphology has emphasized the development and application of digital terrain models to better understand process-form relations. However, field measurements in mountain channels have largely been restricted to low velocity or ephemeral flow conditions. To address this problem, a new high-resolution mechanical surveying system was developed at UC Davis and used to measure the 3D bed and water surface topographies of an unwadeable plunging hydraulic jump in the Cache Creek basin, CA. Labeled as the River Truss, the system is capable of making high-resolution form and process measurements over a 30 to 115 m2 area. Bed and water surface DTMs were derived from the field data using AutoCAD. River Truss precision was assessed by DTM differencing the hydraulic jump bed surface topography with a DTM developed from tacheometric survey at low base flows. Bed surface DTMs indicate significant spatial complexity of the underlying bed step in the supercritical flow region and significant downstream bed scour. Water surface DTMs indicate 3D complexity of the plunging flow surface and divergence from 1D free-fall theory. Further study will emphasize the development and deployment of process-based instrumentation such that the complex turbulent air-water flow dynamics associated with natural hydraulic jumps may be better understood. Also, a second generation River Truss that has a larger coverage area and automated data collection has been designed and is now being built.

  11. Comparison of homogenized and enhanced diffusion solutions of model PWR problems

    SciTech Connect

    Lewis, E. E.; Smith, M. A.

    2012-07-01

    Model problem comparisons in slab geometry are made between two forms of homogenized diffusion theory and enhanced diffusion theory. The pin-cell discontinuity factors for homogenized diffusion calculations are derived from homogenized variational nodal P1 response matrices and from standard finite differencing. Enhanced diffusion theory consists of applying quasi-reflected interface conditions to reduce variational nodal Pn response matrices to one degree of freedom per interface, without homogenization within the cell. As expected both homogenized diffusion methods preserve reaction rates exactly if the discontinuity factors are derived from the P 11 reference solutions. If no reference lattice solution is available, discontinuity factors may be approximated from single cells with reflected boundary conditions; the computational effort is then comparable to calculating the enhanced diffusion response matrices. In this situation enhanced diffusion theory gives the most accurate results and finite difference discontinuity factors the least accurate. (authors)

  12. Mesopause jumps at Antarctic latitudes

    NASA Astrophysics Data System (ADS)

    Lübken, Franz-Josef; Höffner, Josef; Becker, Erich; Latteck, Ralph; Murphy, Damian

    2016-04-01

    Recent high resolution temperature measurements by resonance lidar at Davis (69°S) occasionally showed a sudden mesopause altitude increase by ˜5 km and an associated mesopause temperature decrease by ˜10 K. We present further observations which are closely related to this 'mesopause jump', namely the increase of mean height of polar mesospheric summer echoes (PMSE) observed by a VHF radar, very strong westward winds in the upper mesosphere measured by an MF radar, and relatively large eastward winds in the stratosphere taken from reanalysis. We compare to similar observations in the Northern Hemisphere, namely at ALOMAR (69°N) where such mesopause jumps have never been observed. We present a detailed explanation of mesopause jumps. They occur only when stratospheric winds are moderately eastward and mesospheric winds are very large (westward). Under these conditions, gravity waves with comparatively large eastward phase Speeds can pass the stratosphere and propagate to the lower thermosphere because their vertical wavelengths in the mesosphere are rather large which implies reduced dynamical stability. When finally breaking in the lower thermosphere, these waves drive an enhanced residual circulation that causes a cold and high-altitude mesopause. The conditions for a mesopause jump occur only in the Southern Hemisphere (SH) and are associated with the late breakdown of the polar vortex. Mesopause jumps are primarily, but not only, observed prior and close to solstice. We also show that during the onset of PMSE in the SH, stratospheric zonal winds are still eastward (up to 30 m/s), and that the onset is not closely related to the Transition of the stratospheric circulation.

  13. Computer modeling of Earthshine contamination on the VIIRS solar diffuser

    NASA Astrophysics Data System (ADS)

    Mills, Stephen P.; Agravante, Hiroshi; Hauss, Bruce; Klein, James E.; Weiss, Stephanie C.

    2005-10-01

    The Visible/Infrared Imager Radiometer Suite (VIIRS), built by Raytheon Santa Barbara Remote Sensing (SBRS) will be one of the primary earth-observing remote-sensing instruments on the National Polar-Orbiting Operational Environmental Satellite System (NPOESS). It will also be installed on the NPOESS Preparatory Project (NPP). These satellite systems fly in near-circular, sun-synchronous low-earth orbits at altitudes of approximately 830 km. VIIRS has 15 bands designed to measure reflectance with wavelengths between 412 nm and 2250 nm, and an additional 7 bands measuring primarily emissive radiance between 3700nm and 11450 nm. The calibration source for the reflective bands is a solar diffuser (SD) that is illuminated once per orbit as the satellite passes from the dark side to the light side of the earth near the poles. Sunlight enters VIIRS through an opening in the front of the instrument. An attenuation screen covers the opening, but other than this there are no other optical elements between the SD and the sun. The BRDF of the SD and the transmittance of the attenuation screen is measured pre-flight, and so with knowledge of the angles of incidence, the radiance of the sun can be computed and is used as a reference to produce calibrated reflectances and radiances. Unfortunately, the opening also allows a significant amount of reflected earthshine to illuminate part of the SD, and this component introduces radiometric error to the calibration process, referred to as earthshine contamination (ESC). The VIIRS radiometric error budget allocated a 0.3% error based on modeling of the ESC done by SBRS during the design phase. This model assumes that the earth has Lambertian BRDF with a maximum top-of-atmosphere albedo of 1. The Moderate Resolution Imaging Spectroradiometer (MODIS) has an SD with a design similar to VIIRS, and in 2003 the MODIS Science Team reported to Northrop Grumman Space Technology (NGST), the prime contractor for NPOESS, their suspicion that ESC

  14. Tempered stable Lévy motion and transient super-diffusion

    NASA Astrophysics Data System (ADS)

    Baeumer, Boris; Meerschaert, Mark M.

    2010-03-01

    The space-fractional diffusion equation models anomalous super-diffusion. Its solutions are transition densities of a stable Lévy motion, representing the accumulation of power-law jumps. The tempered stable Lévy motion uses exponential tempering to cool these jumps. A tempered fractional diffusion equation governs the transition densities, which progress from super-diffusive early-time to diffusive late-time behavior. This article provides finite difference and particle tracking methods for solving the tempered fractional diffusion equation with drift. A temporal and spatial second-order Crank-Nicolson method is developed, based on a finite difference formula for tempered fractional derivatives. A new exponential rejection method for simulating tempered Lévy stables is presented to facilitate particle tracking codes.

  15. Model for radon diffusion through the lunar regolith.

    NASA Technical Reports Server (NTRS)

    Friesen, L. J.; Heymann, D.

    1972-01-01

    Description of a model for radon diffusion through the lunar regolith in which the atom migrates by random walk. The regolith is represented by a system of randomly oriented baffles in which the mean distance which the atom travels between two collisions takes on the role of a mean free path. The effective mean time between two collisions depends on two entities: the actual mean time-of-flight and the mean sticking time on grain surfaces for one collision. The latter depends strongly on the temperature and the heat of adsorption of radon on regolith materials. Both the mean free path as well as the heat of adsorption are either poorly known or unknown for the lunar regolith; hence these quantities are treated as free parameters. Because of the greatly different mean lifetimes against radioactive decay of Rn219, Rn220, and Rn222, the regolith acts as a powerful 'filter' for these species. Rn222 escape is significant (32%) even for a mean free path of 1 micron, a heat of adsorption of 7.0 kcal/mole and a regolith depth of 4 m. Calculations of radon escape from a 4 m thick regolith, using mean free paths of 1, 10, and 80 microns and heats of adsorption of 4.0, 5.2, and 7.0 kcal/mole show that the Rn222/Rn220 escape ratio can be as small as 7.7 and as large as, or larger than 47. The small value of 7.7 is of particular interest, because it is nearly equal to the escape ratio inferred by Turkevich et al. (1970) from their Surveyor 5 results.

  16. An Electrodynamics-Based Model for Ion Diffusion in Microbial Polysaccharides

    SciTech Connect

    Liu, Chongxuan; Zachara, John M.; Felmy, Andrew R.; Gorby, Yuri A.

    2004-08-03

    An electrodynamics-based model was formulated for simulation of ion diffusion in microbial polysaccharides with fixed charges and electrostatic double layers. The model extends a common multicomponent ion diffusion model that is based on irreversible thermodynamics under a zero ionic charge flux condition, which is only applicable to the regions without fixed charges and electrostatic double layers. An efficient numerical procedure was presented to solve the differential equations in the model. The model well described key features of experimental observations of ion diffusion in negatively charged microbial polysaccharides including accelerated diffusive transport of cations, exclusion of anions, and increased rate of cation transport with increasing negative charge density. The simulated diffusive fluxes of cations and anions were consistent with a classic exchange diffusion concept in negatively charged polysaccharides at the interface of plant roots and soils; and the developed model allows to mathematically study such diffusion phenomena. Numerical simulations also showed that ion diffusive transport within a bacterial cell wall polysaccharide may induce an ionic current that compresses or expands the bacterial electrostatic double layer at the interface of the cell wall and bulk solution.

  17. Aeromechanics of the Spider Cricket Jump: How to Jump 60+ Times Your Body Length and Still Land on Your Feet

    NASA Astrophysics Data System (ADS)

    Palmer, Emily; Deshler, Nicolas; Gorman, David; Neves, Catarina; Mittal, Rajat

    2015-11-01

    Flapping, gliding, running, crawling and swimming have all been studied extensively in the past and have served as a source of inspiration for engineering designs. In the current project, we explore a mode of locomotion that straddles ground and air: jumping. The subject of our study is among the most proficient of long-jumpers in Nature: the spider cricket of the family Rhaphidophoridae, which can jump more than 60 times its body length. Despite jumping this immense distance, these crickets usually land on their feet, indicating an ability to control their posture during ``flight.'' We employ high-speed videogrammetry, to examine the jumps and to track the crickets' posture and appendage orientation throughout their jumps. Simple aerodynamic models are developed to predict the aerodynamic forces and moment on the crickets during `flight`. The analysis shows that these wingless insects employ carefully controlled and coordinated positioning of the limbs during flight so as to increase jump distance and to stabilize body posture during flight. The principles distilled from this study could serve as an inspiration for small jumping robots that can traverse complex terrains.

  18. A traceable physical calibration of the vertical advection-diffusion equation for modeling ocean heat uptake

    NASA Astrophysics Data System (ADS)

    Huber, Markus; Tailleux, Remi; Ferreira, David; Kuhlbrodt, Till; Gregory, Jonathan

    2015-04-01

    The classic vertical advection-diffusion (VAD) balance is a central concept in studying the ocean heat budget, in particular in simple climate models (SCMs). Here we present a new framework to calibrate the parameters of the VAD equation to the vertical ocean heat balance of two fully-coupled climate models that is traceable to the models' circulation as well as to vertical mixing and diffusion processes. Based on temperature diagnostics, we derive an effective vertical velocity w∗ and turbulent diffusivity kν∗ for each individual physical process. In steady state, we find that the residual vertical velocity and diffusivity change sign in middepth, highlighting the different regional contributions of isopycnal and diapycnal diffusion in balancing the models' residual advection and vertical mixing. We quantify the impacts of the time evolution of the effective quantities under a transient 1% CO2 simulation and make the link to the parameters of currently employed SCMs.

  19. Test-retest reliability of jump execution variables using mechanography: A comparison of jump protocols

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mechanography during the vertical jump test allows for evaluation of force-time variables reflecting jump execution, which may enhance screening for functional deficits that reduce physical performance and determining mechanistic causes underlying performance changes. However, utility of jump mechan...

  20. Diffuse ultraviolet erythemal irradiance on inclined planes: a comparison of experimental and modeled data.

    PubMed

    Utrillas, María P; Marín, María J; Esteve, Anna R; Estellés, Victor; Tena, Fernando; Cañada, Javier; Martínez-Lozano, José A

    2009-01-01

    Values of measured and modeled diffuse UV erythemal irradiance (UVER) for all sky conditions are compared on planes inclined at 40 degrees and oriented north, south, east and west. The models used for simulating diffuse UVER are of the geometric-type, mainly the Isotropic, Klucher, Hay, Muneer, Reindl and Schauberger models. To analyze the precision of the models, some statistical estimators were used such as root mean square deviation, mean absolute deviation and mean bias deviation. It was seen that all the analyzed models reproduce adequately the diffuse UVER on the south-facing plane, with greater discrepancies for the other inclined planes. When the models are applied to cloud-free conditions, the errors obtained are higher because the anisotropy of the sky dome acquires more importance and the models do not provide the estimation of diffuse UVER accurately. PMID:19496991

  1. Modeling the flow in diffuse interface methods of solidification

    NASA Astrophysics Data System (ADS)

    Subhedar, A.; Steinbach, I.; Varnik, F.

    2015-08-01

    Fluid dynamical equations in the presence of a diffuse solid-liquid interface are investigated via a volume averaging approach. The resulting equations exhibit the same structure as the standard Navier-Stokes equation for a Newtonian fluid with a constant viscosity, the effect of the solid phase fraction appearing in the drag force only. This considerably simplifies the use of the lattice Boltzmann method as a fluid dynamics solver in solidification simulations. Galilean invariance is also satisfied within this approach. Further, we investigate deviations between the diffuse and sharp interface flow profiles via both quasiexact numerical integration and lattice Boltzmann simulations. It emerges from these studies that the freedom in choosing the solid-liquid coupling parameter h provides a flexible way of optimizing the diffuse interface-flow simulations. Once h is adapted for a given spatial resolution, the simulated flow profiles reach an accuracy comparable to quasiexact numerical simulations.

  2. Modeling the flow in diffuse interface methods of solidification.

    PubMed

    Subhedar, A; Steinbach, I; Varnik, F

    2015-08-01

    Fluid dynamical equations in the presence of a diffuse solid-liquid interface are investigated via a volume averaging approach. The resulting equations exhibit the same structure as the standard Navier-Stokes equation for a Newtonian fluid with a constant viscosity, the effect of the solid phase fraction appearing in the drag force only. This considerably simplifies the use of the lattice Boltzmann method as a fluid dynamics solver in solidification simulations. Galilean invariance is also satisfied within this approach. Further, we investigate deviations between the diffuse and sharp interface flow profiles via both quasiexact numerical integration and lattice Boltzmann simulations. It emerges from these studies that the freedom in choosing the solid-liquid coupling parameter h provides a flexible way of optimizing the diffuse interface-flow simulations. Once h is adapted for a given spatial resolution, the simulated flow profiles reach an accuracy comparable to quasiexact numerical simulations. PMID:26382542

  3. Response to Commentary on "The influence of lung airways branching structure and diffusion time on measurements and models of short-range 3He gas MR diffusion".

    PubMed

    Parra-Robles, Juan; Wild, Jim M

    2014-02-01

    Our extensive investigation of the cylinder model theory through numerical modelling and purpose-designed experiments has demonstrated that it does produce inaccurate estimates of airway dimensions at all diffusion times currently used. This is due to a variety of effects: incomplete treatment of non-Gaussian effects, finite airway size, branching geometry, background susceptibility gradients and diffusion time dependence of the (3)He MR diffusion behaviour in acinar airways. The cylinder model is a good starting point for the development of a lung morphometry technique from (3)He diffusion MR but its limitations need to be understood and documented in the interest of reliable clinical interpretation. PMID:24342570

  4. A fractional Fokker-Planck model for anomalous diffusion

    SciTech Connect

    Anderson, Johan; Kim, Eun-jin; Moradi, Sara

    2014-12-15

    In this paper, we present a study of anomalous diffusion using a Fokker-Planck description with fractional velocity derivatives. The distribution functions are found using numerical means for varying degree of fractionality of the stable Lévy distribution. The statistical properties of the distribution functions are assessed by a generalized normalized expectation measure and entropy in terms of Tsallis statistical mechanics. We find that the ratio of the generalized entropy and expectation is increasing with decreasing fractionality towards the well known so-called sub-diffusive domain, indicating a self-organising behavior.

  5. Modeling of the magnetic free energy of self-diffusion in bcc Fe

    NASA Astrophysics Data System (ADS)

    Sandberg, N.; Chang, Z.; Messina, L.; Olsson, P.; Korzhavyi, P.

    2015-11-01

    A first-principles based approach to calculating self-diffusion rates in bcc Fe is discussed with particular focus on the magnetic free energy associated with diffusion activation. First, the enthalpies and entropies of vacancy formation and migration in ferromagnetic bcc Fe are calculated from standard density functional theory methods in combination with transition state theory. Next, the shift in diffusion activation energy when going from the ferromagnetic to the paramagnetic state is estimated by averaging over random spin states. Classical and quantum mechanical Monte Carlo simulations within the Heisenberg model are used to study the effect of spin disordering on the vacancy formation and migration free energy. Finally, a quasiempirical model of the magnetic contribution to the diffusion activation free energy is applied in order to connect the current first-principles results to experimental data. The importance of the zero-point magnon energy in modeling of diffusion in bcc Fe is stressed.

  6. Employing a Modified Diffuser Momentum Model to Simulate Ventilation of the Orion CEV

    NASA Technical Reports Server (NTRS)

    Straus, John; Lewis, John F.

    2011-01-01

    The Ansys CFX CFD modeling tool was used to support the design efforts of the ventilation system for the Orion CEV. CFD modeling was used to establish the flow field within the cabin for several supply configurations. A mesh and turbulence model sensitivity study was performed before the design studies. Results were post-processed for comparison with performance requirements. Most configurations employed straight vaned diffusers to direct and throw the flow. To manage the size of the models, the diffuser vanes were not resolved. Instead, a momentum model was employed to account for the effect of the diffusers. The momentum model was tested against a separate, vane-resolved side study. Results are presented for a single diffuser configuration for a low supply flow case.

  7. Diffusion versus network models as descriptions for the spread of prion diseases in the brain.

    PubMed

    Matthäus, Franziska

    2006-05-01

    In this paper we will discuss different modeling approaches for the spread of prion diseases in the brain. Firstly, we will compare reaction-diffusion models with models of epidemic diseases on networks. The solutions of the resulting reaction-diffusion equations exhibit traveling wave behavior on a one-dimensional domain, and the wave speed can be estimated. The models can be tested for diffusion-driven (Turing) instability, which could present a possible mechanism for the formation of plaques. We also show that the reaction-diffusion systems are capable of reproducing experimental data on prion spread in the mouse visual system. Secondly, we study classical epidemic models on networks, and use these models to study the influence of the network topology on the disease progression. PMID:16219329

  8. Primary migration by diffusion through kerogen: I. Model experiments with organic-coated rocks

    SciTech Connect

    Thomas, M.M.; Clouse, J.A. )

    1990-10-01

    Laboratory experiments were performed to assess diffusion through kerogen as a mechanism of hydrocarbon transport through fine-grained rocks. Such transport can be important in primary migration within source rocks and in leakage through seals. To test the concept of diffusion through organic matter networks, model experiments were performed in which hydrocarbon diffusion was measured through Austin chalk cores that had been coated with a monolayer of fatty acids. Hydrocarbon fluxes through the coated cores were compared to hydrocarbon fluxes through uncoated Austin chalk cores. Results showed that the organic coating enhanced transport through the core by a hundredfold over diffusion through its water-filled pore space alone.

  9. SIMPLE PDF MODELS FOR CONVECTIVELY DRIVEN VERTICAL DIFFUSION

    EPA Science Inventory

    The mode of vertical velocity in convective boundary layers is usually negative and the probability distribution function(PDF) of w, pw is rarely symmetrlc. Consequently, vertical diffusion from elevated sources is usually asymmetric and exhibits a descending mode of concentratio...

  10. First Principles Modeling of Bimolecular Reactions with Diffusion

    NASA Astrophysics Data System (ADS)

    Hansen, S. K.; Scher, H.; Berkowitz, B.

    2013-12-01

    We consider three approaches to modeling A + B → C irreversible reactions in natural media: 1) a discretized diffusion-reaction equation (DRE), 2) a particle tracking (PT) scheme in which reaction occurs if and only if an A and B particle pair are within a fixed distance, r (the "reaction radius"), and 3) a PT scheme using an alternative to the fixed reaction radius: a collocation probability distribution derived directly from first principles. Each approach has advantages. In some cases a discretized DRE may be the most computationally efficient method. For PT simulations, robust codes exist based on use of a fixed reaction radius. And finally, collocation probabilities may be derived directly from the Fick's Law constant, D, which is a well-established property for most species. In each approach, a single parameter governs the 'promiscuity' of the reaction (i.e. the thermodynamic favorability of reaction, predicated on the particles being locally well mixed). For the DRE, fixed-reaction-radius PT, and collocation-based PT, these parameters are, respectively: a second-order decay rate, r, and D. We established a number of new results enhancing these approaches and relating them to each other (and to nature). In particular, a thought experiment concerning a simple system in which the predictions of each approach can be computed analytically was used to derive formulas establishing a universal one-to-one correspondence among each of the governing parameters. We thus showed the conditions for equivalence of the three approaches, and grounded both the DRE approach and the fixed-radius PT approach in the Fick's Law D. We further showed that the existing collocation-based PT theory is based on a probability distribution that is only correct for infinitesimally small times, but which can be modified to be accurate for larger times by means of continuous time random walk analysis and first-passage probability distributions. Finally, we employed a novel mathematical

  11. A review of porous media enhanced vapor-phase diffusion mechanisms, models, and data: Does enhanced vapor-phase diffusion exist?

    SciTech Connect

    Ho, C.K.; Webb, S.W.

    1996-05-01

    A review of mechanisms, models, and data relevant to the postulated phenomenon of enhanced vapor-phase diffusion in porous media is presented. Information is obtained from literature spanning two different disciplines (soil science and engineering) to gain a diverse perspective on this topic. Findings indicate that while enhanced vapor diffusion tends to correct the discrepancies observed between past theory and experiments, no direct evidence exists to support the postulated processes causing enhanced vapor diffusion. Numerical modeling analyses of experiments representative of the two disciplines are presented in this paper to assess the sensitivity of different systems to enhanced vapor diffusion. Pore-scale modeling is also performed to evaluate the relative significance of enhanced vapor diffusion mechanisms when compared to Fickian diffusion. The results demonstrate the need for additional experiments so that more discerning analyses can be performed.

  12. Information diffusion, Facebook clusters, and the simplicial model of social aggregation: a computational simulation of simplicial diffusers for community health interventions.

    PubMed

    Kee, Kerk F; Sparks, Lisa; Struppa, Daniele C; Mannucci, Mirco A; Damiano, Alberto

    2016-01-01

    By integrating the simplicial model of social aggregation with existing research on opinion leadership and diffusion networks, this article introduces the constructs of simplicial diffusers (mathematically defined as nodes embedded in simplexes; a simplex is a socially bonded cluster) and simplicial diffusing sets (mathematically defined as minimal covers of a simplicial complex; a simplicial complex is a social aggregation in which socially bonded clusters are embedded) to propose a strategic approach for information diffusion of cancer screenings as a health intervention on Facebook for community cancer prevention and control. This approach is novel in its incorporation of interpersonally bonded clusters, culturally distinct subgroups, and different united social entities that coexist within a larger community into a computational simulation to select sets of simplicial diffusers with the highest degree of information diffusion for health intervention dissemination. The unique contributions of the article also include seven propositions and five algorithmic steps for computationally modeling the simplicial model with Facebook data. PMID:26362453

  13. Monte Carlo simulation with fixed steplength for diffusion processes in nonhomogeneous media

    NASA Astrophysics Data System (ADS)

    Ruiz Barlett, V.; Hoyuelos, M.; Mártin, H. O.

    2013-04-01

    Monte Carlo simulation is one of the most important tools in the study of diffusion processes. For constant diffusion coefficients, an appropriate Gaussian distribution of particle's steplengths can generate exact results, when compared with integration of the diffusion equation. It is important to notice that the same method is completely erroneous when applied to non-homogeneous diffusion coefficients. A simple alternative, jumping at fixed steplengths with appropriate transition probabilities, produces correct results. Here, a model for diffusion of calcium ions in the neuromuscular junction of the crayfish is used as a test to compare Monte Carlo simulation with fixed and Gaussian steplength.

  14. A fractal derivative model for the characterization of anomalous diffusion in magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Liang, Yingjie; Ye, Allen Q.; Chen, Wen; Gatto, Rodolfo G.; Colon-Perez, Luis; Mareci, Thomas H.; Magin, Richard L.

    2016-10-01

    Non-Gaussian (anomalous) diffusion is wide spread in biological tissues where its effects modulate chemical reactions and membrane transport. When viewed using magnetic resonance imaging (MRI), anomalous diffusion is characterized by a persistent or 'long tail' behavior in the decay of the diffusion signal. Recent MRI studies have used the fractional derivative to describe diffusion dynamics in normal and post-mortem tissue by connecting the order of the derivative with changes in tissue composition, structure and complexity. In this study we consider an alternative approach by introducing fractal time and space derivatives into Fick's second law of diffusion. This provides a more natural way to link sub-voxel tissue composition with the observed MRI diffusion signal decay following the application of a diffusion-sensitive pulse sequence. Unlike previous studies using fractional order derivatives, here the fractal derivative order is directly connected to the Hausdorff fractal dimension of the diffusion trajectory. The result is a simpler, computationally faster, and more direct way to incorporate tissue complexity and microstructure into the diffusional dynamics. Furthermore, the results are readily expressed in terms of spectral entropy, which provides a quantitative measure of the overall complexity of the heterogeneous and multi-scale structure of biological tissues. As an example, we apply this new model for the characterization of diffusion in fixed samples of the mouse brain. These results are compared with those obtained using the mono-exponential, the stretched exponential, the fractional derivative, and the diffusion kurtosis models. Overall, we find that the order of the fractal time derivative, the diffusion coefficient, and the spectral entropy are potential biomarkers to differentiate between the microstructure of white and gray matter. In addition, we note that the fractal derivative model has practical advantages over the existing models from the

  15. International Toys in Space: Jump Rope

    NASA Video Gallery

    Cosmonaut Valery Korzun attempts jumping rope in microgravity. He decides to adapt the activity by taking out the "jumping part," but the act of spinning the rope around him still proves difficult....

  16. Diffusion on a hypersphere: application to the Wright-Fisher model

    NASA Astrophysics Data System (ADS)

    Maruyama, Kishiko; Itoh, Yoshiaki

    2016-04-01

    The eigenfunction expansion by Gegenbauer polynomials for the diffusion on a hypersphere is transformed into the diffusion for the Wright-Fisher model with a particular mutation rate. We use the Ito calculus considering stochastic differential equations. The expansion gives a simple interpretation of the Griffiths eigenfunction expansion for the Wright-Fisher model. Our representation is useful to simulate the Wright-Fisher model as well as Brownian motion on a hypersphere.

  17. Estimation of Species Diffusivities in Dense Plasma Mixtures Modeled with the Yukawa Interionic Potential

    NASA Astrophysics Data System (ADS)

    Haxhimali, Tomorr; Rudd, Robert; Jackson, Julie; Surh, Michael; Cabot, William; Caspersen, Kyle; Greenough, Jeffrey; Graziani, Frank; Miller, Paul

    2012-10-01

    We employ classical molecular dynamics (MD) to investigate species diffusivity in binary Yukawa mixtures. The Yukawa potential is used to describe the screened Coulomb interaction between the ions, providing the basis for models of dense stellar materials, inertial confined plasmas, and colloidal particles in electrolytes. We use Green-Kubo techniques to calculate self-diffusivities and the Maxwell-Stefan diffusivities, and evaluate the validity of the Darken relation over a range of thermodynamic conditions of the mixture. The inter-diffusivity (or mutual diffusivity) can then be related to the Maxwell-Stefan diffusivities through the thermodynamic factor. The latter requires knowledge of the equation of state of the mixture. To test these Green-Kubo approaches and to estimate the activity contribution we have also employed large-scale non-equilibrium MD. In these simulations we can extract the inter-diffusivity value by calculating the rate of broadening of the interface in a diffusion couple. We also explore thermodynamic conditions for possible non-Fickian diffusivity. The main motivation in this work is to build a model that describes the transport coefficients in binary Yukawa mixtures over a broad range of thermodynamic conditions up to 1keV.

  18. Katabatic jumps over Martian polar terrains

    NASA Astrophysics Data System (ADS)

    Spiga, Aymeric; Smith, Isaac; Holt, Jack

    2015-04-01

    Recent observational and modeling studies have shed light on the key role of mesoscale phenomena in driving the Martian climate and giving rise to remarkable signatures in the temperature, wind, pressure, and aerosol fields of the Martian atmosphere. At the mesoscale, Mars appears as an intense and exotic counterpart to the Earth, mainly as a result of pronounced diurnal and regional contrasts of surface temperature, and the much thinner atmosphere. While observations of clear-cut katabatic events are difficult on Earth, except over vast ice sheets, those intense downslope circulations are widespread on Mars owing to near-surface radiative cooling and uneven topography. Their intensity and regularity can be witnessed through numerous aeolian signatures on the surface, and distinctive thermal signatures in the steepest craters and volcanoes. Several observations (radar observations, frost streaks, spectral analysis of ices, ...) concur to show that aeolian processes play a key role in glacial processes in Martian polar regions over geological timescales. A spectacular manifestation of this resides in elongated clouds that forms at the bottom of polar spiral troughs, which dominates the polar landscape both in the North and South. An analogy with the terrestrial "wall-of-snow" over e.g. Antarctica slopes or coastlines posits that those clouds are caused by local katabatic jumps, also named Loewe phenomena, which can be deemed similar to first order to hydraulic jumps in open channel flow. With mesoscale modeling in polar regions using 5 nested domains operating a model downscaling from horizontal resolutions of about twenty kilometers to 200 meters, we were able 1. to predict the near-surface wind structure over the whole Martian polar caps, with interactions between katabatic acceleration, Coriolis deflection, transient phenomena, and thermally-forced circulations by the ice / bare soil contrast and 2. to show that katabatic jumps form at the bottom of polar troughs

  19. An efficient wavelet analysis method to film-pore diffusion model arising in mathematical chemistry.

    PubMed

    Hariharan, G

    2014-04-01

    In this paper, we have established an efficient Legendre wavelet based approximation method to solve film-pore diffusion model arising in engineering. Film-pore diffusion model is widely used to determine study the kinetics of adsorption systems. The use of Legendre wavelet based approximation method is found to be accurate, simple, fast, flexible, convenient, and computationally attractive. It is shown that film-pore diffusion model satisfactorily describe kinetics of methylene blue adsorption onto the three low-cost adsorbents, Guava, teak and gulmohar plant leaf powders, used in this study. PMID:24562792

  20. A Computational Model for Diffusion Weighted Imaging of Myelinated White Matter

    PubMed Central

    Baxter, Gregory T.; Frank, Lawrence R.

    2013-01-01

    The signal for diffusion weighted magnetic resonance imaging has previously been represented analytically and simulated numerically for a variety of model problems with idealized geometries. Numerical simulations hold the promise of computing the diffusion weighted MR signal for more complex realistic tissue architectures and physiological models. This paper investigates a white matter model consisting of a matrix of coated cylinders with distinct diffusion coefficients and spin concentrations for each of the cylinder core, the coating, and the surrounding bath and compares results with an the analytical solution developed by Sen and Basser for the long diffusion time limit. Numerical simulations of diffusion weighted imaging experiments are performed for the three-medium model using a Monte Carlo diffusion simulation. Experiments are carried out for model parameters representing normal white matter. Pulse sequence parameters range from a low b value, long time limit, short pulse approximation to realistic clinical values. For simulations in the short pulse width, long diffusion time limit, numerical simulations agree with the Sen-Basser analytical result. When tested with realistic pulse sequence parameters, numerical simulations show lower anisotropy than the analytical model predicts. PMID:23507381

  1. Modeling of band-3 protein diffusion in the normal and defective red blood cell membrane.

    PubMed

    Li, He; Zhang, Yihao; Ha, Vi; Lykotrafitis, George

    2016-04-13

    We employ a two-component red blood cell (RBC) membrane model to simulate lateral diffusion of band-3 proteins in the normal RBC and in the RBC with defective membrane proteins. The defects reduce the connectivity between the lipid bilayer and the membrane skeleton (vertical connectivity), or the connectivity of the membrane skeleton itself (horizontal connectivity), and are associated with the blood disorders of hereditary spherocytosis (HS) and hereditary elliptocytosis (HE) respectively. Initially, we demonstrate that the cytoskeleton limits band-3 lateral mobility by measuring the band-3 macroscopic diffusion coefficients in the normal RBC membrane and in a lipid bilayer without the cytoskeleton. Then, we study band-3 diffusion in the defective RBC membrane and quantify the relation between band-3 diffusion coefficients and percentage of protein defects in HE RBCs. In addition, we illustrate that at low spectrin network connectivity (horizontal connectivity) band-3 subdiffusion can be approximated as anomalous diffusion, while at high horizontal connectivity band-3 diffusion is characterized as confined diffusion. Our simulations show that the band-3 anomalous diffusion exponent depends on the percentage of protein defects in the membrane cytoskeleton. We also confirm that the introduction of attraction between the lipid bilayer and the spectrin network reduces band-3 diffusion, but we show that this reduction is lower than predicted by the percolation theory. Furthermore, we predict that the attractive force between the spectrin filament and the lipid bilayer is at least 20 times smaller than the binding forces at band-3 and glycophorin C, the two major membrane binding sites. Finally, we explore diffusion of band-3 particles in the RBC membrane with defects related to vertical connectivity. We demonstrate that in this case band-3 diffusion can be approximated as confined diffusion for all attraction levels between the spectrin network and the lipid bilayer

  2. Modelling the Mach bands illusion by means of a diffusion model.

    PubMed

    Geier, Janos; Hudák, Mariann

    2014-01-01

    First, we criticize the validity of the principle of lateral inhibition. Second, on the basis of illusory phenomena and stabilized retinal images, we point out that the retina does not code the absolute luminance; the retina forwards a relative luminance sketch towards higher levels of the visual system. However, at the level of conscious processing the perceptual counterpart of absolute luminance, brightness, is available. Therefore, it is reasonable to assume that a reconstruction process is carried out by the visual system, which recovers the inner representation that corresponds to the retinal light distribution from the coded relative luminance sketch. We provide an illustrative description of a computational model of this reconstruction process. The basis of the reconstruction is a mathematically provable theorem, according to which if image P is produced from image I by Laplacian filtering, and then P is used as the sources and sinks of a homogeneous linear diffusion process, then the equilibrium of the diffusion will be identical to the original image I. We have illustrated this by a one-dimensional heat diffusion example, and by a series of test tubes connected to each other, also in one dimension. Brightness illusions are considered as a side effect of this diffusion-based reconstruction process. If the diffusion process deviates from the principle of homogeneous linearity, then the result of the reconstruction will deviate from the original image I. We showed a concrete illustration of this with regards to the Mach bands illusion: here we violated the principle of homogeneous linearity by means of inserting a small vertical tube serving as a serial resistance between each test tube and the horizontal connecting tube. This violation resulted in a change of water level in the source and the sink test tubes corresponding to the Mach bands illusion. PMID:25420330

  3. Modelling the Mach bands illusion by means of a diffusion model.

    PubMed

    Geier, Janos; Hudák, Mariann

    2014-01-01

    First, we criticize the validity of the principle of lateral inhibition. Second, on the basis of illusory phenomena and stabilized retinal images, we point out that the retina does not code the absolute luminance; the retina forwards a relative luminance sketch towards higher levels of the visual system. However, at the level of conscious processing the perceptual counterpart of absolute luminance, brightness, is available. Therefore, it is reasonable to assume that a reconstruction process is carried out by the visual system, which recovers the inner representation that corresponds to the retinal light distribution from the coded relative luminance sketch. We provide an illustrative description of a computational model of this reconstruction process. The basis of the reconstruction is a mathematically provable theorem, according to which if image P is produced from image I by Laplacian filtering, and then P is used as the sources and sinks of a homogeneous linear diffusion process, then the equilibrium of the diffusion will be identical to the original image I. We have illustrated this by a one-dimensional heat diffusion example, and by a series of test tubes connected to each other, also in one dimension. Brightness illusions are considered as a side effect of this diffusion-based reconstruction process. If the diffusion process deviates from the principle of homogeneous linearity, then the result of the reconstruction will deviate from the original image I. We showed a concrete illustration of this with regards to the Mach bands illusion: here we violated the principle of homogeneous linearity by means of inserting a small vertical tube serving as a serial resistance between each test tube and the horizontal connecting tube. This violation resulted in a change of water level in the source and the sink test tubes corresponding to the Mach bands illusion. PMID:25507314

  4. Strawberry Shortcake and Other Jumping Rope Ideas.

    ERIC Educational Resources Information Center

    Adams, Polly K.; Taylor, Michaell K.

    Information, guidelines, and activities for jumping rope are given. A short history of jumping rope explains how it evolved from a spring ritual for men to a play activity involving mostly young girls. Physical and cultural reasons are given as to why jumping rope has been more a sport for girls than for boys. Research studies are noted which show…

  5. The Physics of Equestrian Show Jumping

    ERIC Educational Resources Information Center

    Stinner, Art

    2014-01-01

    This article discusses the kinematics and dynamics of equestrian show jumping. For some time I have attended a series of show jumping events at Spruce Meadows, an international equestrian center near Calgary, Alberta, often referred to as the "Wimbledon of equestrian jumping." I have always had a desire to write an article such as this…

  6. CAPTURE OF TROJANS BY JUMPING JUPITER

    SciTech Connect

    Nesvorny, David; Vokrouhlicky, David; Morbidelli, Alessandro

    2013-05-01

    Jupiter Trojans are thought to be survivors of a much larger population of planetesimals that existed in the planetary region when planets formed. They can provide important constraints on the mass and properties of the planetesimal disk, and its dispersal during planet migration. Here, we tested a possibility that the Trojans were captured during the early dynamical instability among the outer planets (aka the Nice model), when the semimajor axis of Jupiter was changing as a result of scattering encounters with an ice giant. The capture occurs in this model when Jupiter's orbit and its Lagrange points become radially displaced in a scattering event and fall into a region populated by planetesimals (that previously evolved from their natal transplanetary disk to {approx}5 AU during the instability). Our numerical simulations of the new capture model, hereafter jump capture, satisfactorily reproduce the orbital distribution of the Trojans and their total mass. The jump capture is potentially capable of explaining the observed asymmetry in the number of leading and trailing Trojans. We find that the capture probability is (6-8) Multiplication-Sign 10{sup -7} for each particle in the original transplanetary disk, implying that the disk contained (3-4) Multiplication-Sign 10{sup 7} planetesimals with absolute magnitude H < 9 (corresponding to diameter D = 80 km for a 7% albedo). The disk mass inferred from this work, M{sub disk} {approx} 14-28 M{sub Earth}, is consistent with the mass deduced from recent dynamical simulations of the planetary instability.

  7. Physical aging and structural recovery in a colloidal glass subjected to volume-fraction jump conditions

    NASA Astrophysics Data System (ADS)

    Peng, Xiaoguang; McKenna, Gregory B.

    2016-04-01

    Three important kinetic phenomena have been cataloged by Kovacs in the investigation of molecular glasses during structural recovery or physical aging. These are responses to temperature-jump histories referred to as intrinsic isotherms, asymmetry of approach, and memory effect. Here we use a thermosensitive polystyrene-poly (N -isopropylacrylamide)-poly (acrylic acid) core-shell particle-based dispersion as a colloidal model and by working at a constant number concentration of particles we use temperature changes to create volume-fraction changes. This imposes conditions similar to those defined by Kovacs on the colloidal system. We use creep experiments to probe the physical aging and structural recovery behavior of colloidal glasses in the Kovacs-type histories and compare the results with those seen in molecular glasses. We find that there are similarities in aging dynamics between molecular glasses and colloidal glasses, but differences also persist. For the intrinsic isotherms, the times teq needed for relaxing or evolving into the equilibrium (or stationary) state are relatively insensitive to the volume fraction and the values of teq are longer than the α -relaxation time τα at the same volume fraction. On the other hand, both of these times grow at least exponentially with decreasing temperature in molecular glasses. For the asymmetry of approach, similar nonlinear behavior is observed for both colloidal and molecular glasses. However, the equilibration time teq is the same for both volume-fraction up-jump and down-jump experiments, different from the finding in molecular glasses that it takes longer for the structure to evolve into equilibrium for the temperature up-jump condition than for the temperature down-jump condition. For the two-step volume-fraction jumps, a memory response is observed that is different from observations of structural recovery in two-step temperature histories in molecular glasses. The concentration dependence of the dynamics

  8. Diffusive flux in a model of stochastically gated oxygen transport in insect respiration

    NASA Astrophysics Data System (ADS)

    Berezhkovskii, Alexander M.; Shvartsman, Stanislav Y.

    2016-05-01

    Oxygen delivery to insect tissues is controlled by transport through a branched tubular network that is connected to the atmosphere by valve-like gates, known as spiracles. In certain physiological regimes, the spiracles appear to be randomly switching between open and closed states. Quantitative analysis of this regime leads a reaction-diffusion problem with stochastically switching boundary condition. We derive an expression for the diffusive flux at long times in this problem. Our approach starts with the derivation of the passage probability for a single particle that diffuses between a stochastically gated boundary, which models the opening and closing spiracle, and the perfectly absorbing boundary, which models oxygen absorption by the tissue. This passage probability is then used to derive an expression giving the diffusive flux as a function of the geometric parameters of the tube and characteristic time scales of diffusion and gate dynamics.

  9. Turing pattern dynamics and adaptive discretization for a super-diffusive Lotka-Volterra model.

    PubMed

    Bendahmane, Mostafa; Ruiz-Baier, Ricardo; Tian, Canrong

    2016-05-01

    In this paper we analyze the effects of introducing the fractional-in-space operator into a Lotka-Volterra competitive model describing population super-diffusion. First, we study how cross super-diffusion influences the formation of spatial patterns: a linear stability analysis is carried out, showing that cross super-diffusion triggers Turing instabilities, whereas classical (self) super-diffusion does not. In addition we perform a weakly nonlinear analysis yielding a system of amplitude equations, whose study shows the stability of Turing steady states. A second goal of this contribution is to propose a fully adaptive multiresolution finite volume method that employs shifted Grünwald gradient approximations, and which is tailored for a larger class of systems involving fractional diffusion operators. The scheme is aimed at efficient dynamic mesh adaptation and substantial savings in computational burden. A numerical simulation of the model was performed near the instability boundaries, confirming the behavior predicted by our analysis. PMID:26219250

  10. Atomistic modeling of the self-diffusion in γ-U and γ-U-Mo

    NASA Astrophysics Data System (ADS)

    Smirnova, D. E.; Kuksin, A. Yu.; Starikov, S. V.; Stegailov, V. V.

    2015-05-01

    Results of investigations of the self-diffusion in gamma-uranium and metallic U-Mo alloys are presented. Calculations are performed using the method of atomistic modeling with the help of interatomic potentials based on the embedded-atom model and its modifications. Proposed potentials are verified by calculating thermodynamic and mechanical properties of uranium and U-Mo alloys. The formation energies of point defects and atomic diffusivities due to the diffusion of defects are calculated for gamma-uranium and alloy containing 9 wt % molybdenum. Self-diffusion coefficients of uranium and molybdenum are evaluated. Based on the data obtained, it has been concluded that the experimentally observed features of the self-diffusion in gamma-uranium can be explained by the prevalence of the interstitial mechanism.

  11. Numerical study of a cylinder model of the diffusion MRI signal for neuronal dendrite trees.

    PubMed

    Van Nguyen, Dang; Grebenkov, Denis; Le Bihan, Denis; Li, Jing-Rebecca

    2015-03-01

    We study numerically how the neuronal dendrite tree structure can affect the diffusion magnetic resonance imaging (dMRI) signal in brain tissue. For a large set of randomly generated dendrite trees, synthetic dMRI signals are computed and fitted to a cylinder model to estimate the effective longitudinal diffusivity D(L) in the direction of neurites. When the dendrite branches are short compared to the diffusion length, D(L) depends significantly on the ratio between the average branch length and the diffusion length. In turn, D(L) has very weak dependence on the distribution of branch lengths and orientations of a dendrite tree, and the number of branches per node. We conclude that the cylinder model which ignores the connectivity of the dendrite tree, can still be adapted to describe the apparent diffusion coefficient in brain tissue. PMID:25681802

  12. Diffusive flux in a model of stochastically gated oxygen transport in insect respiration.

    PubMed

    Berezhkovskii, Alexander M; Shvartsman, Stanislav Y

    2016-05-28

    Oxygen delivery to insect tissues is controlled by transport through a branched tubular network that is connected to the atmosphere by valve-like gates, known as spiracles. In certain physiological regimes, the spiracles appear to be randomly switching between open and closed states. Quantitative analysis of this regime leads a reaction-diffusion problem with stochastically switching boundary condition. We derive an expression for the diffusive flux at long times in this problem. Our approach starts with the derivation of the passage probability for a single particle that diffuses between a stochastically gated boundary, which models the opening and closing spiracle, and the perfectly absorbing boundary, which models oxygen absorption by the tissue. This passage probability is then used to derive an expression giving the diffusive flux as a function of the geometric parameters of the tube and characteristic time scales of diffusion and gate dynamics. PMID:27250273

  13. Numerical study of a cylinder model of the diffusion MRI signal for neuronal dendrite trees

    NASA Astrophysics Data System (ADS)

    Van Nguyen, Dang; Grebenkov, Denis; Le Bihan, Denis; Li, Jing-Rebecca

    2015-03-01

    We study numerically how the neuronal dendrite tree structure can affect the diffusion magnetic resonance imaging (dMRI) signal in brain tissue. For a large set of randomly generated dendrite trees, synthetic dMRI signals are computed and fitted to a cylinder model to estimate the effective longitudinal diffusivity DL in the direction of neurites. When the dendrite branches are short compared to the diffusion length, DL depends significantly on the ratio between the average branch length and the diffusion length. In turn, DL has very weak dependence on the distribution of branch lengths and orientations of a dendrite tree, and the number of branches per node. We conclude that the cylinder model which ignores the connectivity of the dendrite tree, can still be adapted to describe the apparent diffusion coefficient in brain tissue.

  14. Modeling of TCE diffusion to the atmosphere and distribution in plant stems.

    PubMed

    Ma, Xingmao; Burken, Joel

    2004-09-01

    Fate of chlorinated solvents in phytoremediation has been delineated by many discoveries made in recent years. Plant uptake, metabolism, rhizosphere degradation, accumulation, and volatilization were shown to occur to differing degrees for many organic contaminants including chlorinated solvents. Among these mechanistic findings, recent research confirmed that volatile organic compounds (VOCs) volatilize from stems and that the resulting diffusive flux to the atmosphere is related to exposure concentration and to height up the stem. A comprehensive model was developed based upon all identified fate and transport mechanisms for VOCs, including translocation in the xylem flow and diffusion. The dispersion and diffusion in the radial direction were considered as one process (effective diffusion) as the two could not be investigated individually. The mechanism-based model mathematically indicates an exponential decrease of concentrations with height. While an analytic solution for the comprehensive model was not attained, it can serve as a starting point for other modeling efforts. The comprehensive model was simplified in this work for practical application to experimentally obtained data on trichloroethylene (TCE) fate. Model output correlated well with experimental results, and effective diffusivities for TCE in plant tissues were obtained through the model calibrations. The simplified model approximated TCE concentrations in the transpiration stream as well as TCE volatilization to the atmosphere. Xylem transport, including advection, dispersion, and diffusion through cell walls with subsequent volatilization to the atmosphere, is a major fate for VOCs in phytoremediation. PMID:15461166

  15. Ages estimated from a diffusion equation model for scarp degradation

    USGS Publications Warehouse

    Colman, Steven M.; Watson, K.E.N.

    1983-01-01

    The diffusion equation derived from the continuity equation for hillslopes is applied to scarp erosion in unconsolidated materials. Solutions to this equation allow direct calculation of the product of the rate coefficient and the age of the scarp from measurements of scarp morphology. Where the rate coefficient can be estimated or can be derived from scarps of known age, this method allows direct calculation of unknown ages of scarps.

  16. Bifilm Defect Formation in Hydraulic Jump of Liquid Aluminum

    NASA Astrophysics Data System (ADS)

    Hsu, Fu-Yuan

    2016-06-01

    In aluminum gravity casting, as liquid aluminum fell through a vertical sprue and impacted on the horizontal flat surface, a phenomenon known as hydraulic jump ( i.e., flow transition from super-critical to sub-critical flows) was observed. As the jump was transformed, a reverse eddy motion on the surface of the jump was created. This motion entrained aluminum oxide film from the surface into aluminum melt. This folded film (so-called "bifilm" defect) was engulfed by the melt and caused its quality to deteriorate. To understand this phenomenon, aluminum casting experiments and computational modeling were conducted. In the casting experiment, a radius ( R j) to the point where the circular hydraulic jump occurred was measured. This is the circular region of `irregular surface feature', a rough oxidized surface texture near the center area of the castings. To quantify contents of the bifilm defects in the outer region of the jump, the samples in this region were sectioned and re-melted for doing re-melted reduced pressure test (re-melt RPT). An "area-normalized" bifilm index map was plotted to analyze bifilms' population in the samples. The flow transition in the hydraulic jump of liquid aluminum depended on three pressure heads: inertial, gravitational, and surface-tension pressures. A new theoretical equation containing surface tension for describing the flow transition of liquid metal was proposed.

  17. Measuring and modeling diffuse scattering in protein X-ray crystallography

    DOE PAGESBeta

    Van Benschoten, Andrew H.; Liu, Lin; Gonzalez, Ana; Brewster, Aaron S.; Sauter, Nicholas K.; Fraser, James S.; Wall, Michael E.

    2016-03-28

    X-ray diffraction has the potential to provide rich information about the structural dynamics of macromolecules. To realize this potential, both Bragg scattering, which is currently used to derive macromolecular structures, and diffuse scattering, which reports on correlations in charge density variations, must be measured. Until now, measurement of diffuse scattering from protein crystals has been scarce because of the extra effort of collecting diffuse data. Here, we present 3D measurements of diffuse intensity collected from crystals of the enzymes cyclophilin A and trypsin. The measurements were obtained from the same X-ray diffraction images as the Bragg data, using best practicesmore » for standard data collection. To model the underlying dynamics in a practical way that could be used during structure refinement, we tested translation–libration–screw (TLS), liquid-like motions (LLM), and coarse-grained normal-modes (NM) models of protein motions. The LLM model provides a global picture of motions and was refined against the diffuse data, whereas the TLS and NM models provide more detailed and distinct descriptions of atom displacements, and only used information from the Bragg data. Whereas different TLS groupings yielded similar Bragg intensities, they yielded different diffuse intensities, none of which agreed well with the data. In contrast, both the LLM and NM models agreed substantially with the diffuse data. In conclusion, these results demonstrate a realistic path to increase the number of diffuse datasets available to the wider biosciences community and indicate that dynamics-inspired NM structural models can simultaneously agree with both Bragg and diffuse scattering.« less

  18. Measuring and modeling diffuse scattering in protein X-ray crystallography.

    PubMed

    Van Benschoten, Andrew H; Liu, Lin; Gonzalez, Ana; Brewster, Aaron S; Sauter, Nicholas K; Fraser, James S; Wall, Michael E

    2016-04-12

    X-ray diffraction has the potential to provide rich information about the structural dynamics of macromolecules. To realize this potential, both Bragg scattering, which is currently used to derive macromolecular structures, and diffuse scattering, which reports on correlations in charge density variations, must be measured. Until now, measurement of diffuse scattering from protein crystals has been scarce because of the extra effort of collecting diffuse data. Here, we present 3D measurements of diffuse intensity collected from crystals of the enzymes cyclophilin A and trypsin. The measurements were obtained from the same X-ray diffraction images as the Bragg data, using best practices for standard data collection. To model the underlying dynamics in a practical way that could be used during structure refinement, we tested translation-libration-screw (TLS), liquid-like motions (LLM), and coarse-grained normal-modes (NM) models of protein motions. The LLM model provides a global picture of motions and was refined against the diffuse data, whereas the TLS and NM models provide more detailed and distinct descriptions of atom displacements, and only used information from the Bragg data. Whereas different TLS groupings yielded similar Bragg intensities, they yielded different diffuse intensities, none of which agreed well with the data. In contrast, both the LLM and NM models agreed substantially with the diffuse data. These results demonstrate a realistic path to increase the number of diffuse datasets available to the wider biosciences community and indicate that dynamics-inspired NM structural models can simultaneously agree with both Bragg and diffuse scattering. PMID:27035972

  19. Measuring and modeling diffuse scattering in protein X-ray crystallography

    PubMed Central

    Van Benschoten, Andrew H.; Liu, Lin; Gonzalez, Ana; Brewster, Aaron S.; Sauter, Nicholas K.; Wall, Michael E.

    2016-01-01

    X-ray diffraction has the potential to provide rich information about the structural dynamics of macromolecules. To realize this potential, both Bragg scattering, which is currently used to derive macromolecular structures, and diffuse scattering, which reports on correlations in charge density variations, must be measured. Until now, measurement of diffuse scattering from protein crystals has been scarce because of the extra effort of collecting diffuse data. Here, we present 3D measurements of diffuse intensity collected from crystals of the enzymes cyclophilin A and trypsin. The measurements were obtained from the same X-ray diffraction images as the Bragg data, using best practices for standard data collection. To model the underlying dynamics in a practical way that could be used during structure refinement, we tested translation–libration–screw (TLS), liquid-like motions (LLM), and coarse-grained normal-modes (NM) models of protein motions. The LLM model provides a global picture of motions and was refined against the diffuse data, whereas the TLS and NM models provide more detailed and distinct descriptions of atom displacements, and only used information from the Bragg data. Whereas different TLS groupings yielded similar Bragg intensities, they yielded different diffuse intensities, none of which agreed well with the data. In contrast, both the LLM and NM models agreed substantially with the diffuse data. These results demonstrate a realistic path to increase the number of diffuse datasets available to the wider biosciences community and indicate that dynamics-inspired NM structural models can simultaneously agree with both Bragg and diffuse scattering. PMID:27035972

  20. Degenerate mobilities in phase field models are insufficient to capture surface diffusion

    NASA Astrophysics Data System (ADS)

    Lee, Alpha A.; Münch, Andreas; Süli, Endre

    2015-08-01

    Phase field models frequently provide insight into phase transitions and are robust numerical tools to solve free boundary problems corresponding to the motion of interfaces. A body of prior literature suggests that interface motion via surface diffusion is the long-time, sharp interface limit of microscopic phase field models such as the Cahn-Hilliard equation with a degenerate mobility function. Contrary to this conventional wisdom, we show that the long-time behaviour of degenerate Cahn-Hilliard equation with a polynomial free energy undergoes coarsening, reflecting the presence of bulk diffusion, rather than pure surface diffusion. This reveals an important limitation of phase field models that are frequently used to model surface diffusion.

  1. A Functional Model for Teaching Osmosis-Diffusion to Biology Students

    ERIC Educational Resources Information Center

    Olsen, Richard W.; Petry, Douglas E.

    1976-01-01

    Described is a maternal-fetal model, operated by the student, to teach osmosis-diffusion to biology students. Included are materials needed, assembly instructions, and student operating procedures. (SL)

  2. Mathematical modeling of hydrolysate diffusion and utilization in cellulolytic biofilms of the extreme thermophile Caldicellulosiruptor obsidiansis

    SciTech Connect

    Wang, Zhiwu; Hamilton-Brehm, Scott; Lochner, Adriane; Elkins, James G; Morrell-Falvey, Jennifer L

    2011-01-01

    Abstract: The morphological and structural properties of microbial biofilms are influenced by internal substrate diffusion and utilization processes. In the case of microbial hydrolysis of plant cell walls, only thin and uniform biofilm structures are typically formed by cellulolytic microorganisms. In this study, we develop a hydrolysate diffusion and utilization model system to examine factors influencing cellulolytic biofilm formation. Model simulations using Caldicellulosiruptor obsidiansis as a representative organism, reveal that the growth of the cellulolytic biofilm is limited by hydrolysate utilization but not diffusion. As a consequence, the cellulolytic biofilm has a uniform growth rate, and there is a hydrolysate surplus that diffuses through the cellulolytic biofilm into the bulk solution where it is consumed by planktonic cells. Predictions based on the model were tested in a cellulose fermentation study and the results are consistent with the model and previously reported experimental data. The factors determining the rate-limiting step of biofilm growth are also analyzed.

  3. Improved oxygen mass transfer modeling for diffused or subsurface aeration systems

    SciTech Connect

    McWhirter, J.R.; Hutter, J.C. . Dept. of Chemical Engineering)

    1988-01-01

    The mass transfer analysis of the oxygen transfer performance of diffused air or subsurface mechanical aeration systems has progressed very little over the past twenty years. The ASCE Standard Method for determination of the oxygen mass transfer performance as applied to a diffused or subsurface aeration systems is based on a greatly over-simplified mass transfer model. Although the ASCE Standard can be used to empirically evaluate point performance conditions, it is not suitable for prediction of the performance of diffused aeration systems under changing operating or environmental conditions. A new oxygen mass transfer model has been developed which is a fundamentally more rigorous description of the actual mass transfer process in diffused aeration systems. This model can be confidently used to predict aerator performance under changing operation and environmental conditions and is easily adapted to numerical solution on a computer for routing aeration system performance evaluation as well as process design. The model is presented in this book.

  4. A modified multiple-relaxation-time lattice Boltzmann model for convection-diffusion equation

    NASA Astrophysics Data System (ADS)

    Huang, Rongzong; Wu, Huiying

    2014-10-01

    A modified lattice Boltzmann model with multiple relaxation times (MRT) for the convection-diffusion equation (CDE) is proposed. By modifying the relaxation matrix, as well as choosing the corresponding equilibrium distribution function properly, the present model can recover the CDE with anisotropic diffusion coefficient with no deviation term even when the velocity vector varies generally with space or time through the Chapman-Enskog analysis. This model is firstly validated by simulating the diffusion of a Gaussian hill, which demonstrates it can handle the anisotropic diffusion problem correctly. Then it is adopted to calculate the longitudinal dispersion coefficient of the Taylo-Aris dispersion. Numerical results show that the present model can further reduce the numerical error under the condition of non-zero velocity vector, especially when the dimensionless relaxation time is relatively large.

  5. Epidemic model for information diffusion in web forums: experiments in marketing exchange and political dialog.

    PubMed

    Woo, Jiyoung; Chen, Hsinchun

    2016-01-01

    As social media has become more prevalent, its influence on business, politics, and society has become significant. Due to easy access and interaction between large numbers of users, information diffuses in an epidemic style on the web. Understanding the mechanisms of information diffusion through these new publication methods is important for political and marketing purposes. Among social media, web forums, where people in online communities disseminate and receive information, provide a good environment for examining information diffusion. In this paper, we model topic diffusion in web forums using the epidemiology model, the susceptible-infected-recovered (SIR) model, frequently used in previous research to analyze both disease outbreaks and knowledge diffusion. The model was evaluated on a large longitudinal dataset from the web forum of a major retail company and from a general political discussion forum. The fitting results showed that the SIR model is a plausible model to describe the diffusion process of a topic. This research shows that epidemic models can expand their application areas to topic discussion on the web, particularly social media such as web forums. PMID:26839759

  6. A novel tensor distribution model for the diffusion-weighted MR signal.

    PubMed

    Jian, Bing; Vemuri, Baba C; Ozarslan, Evren; Carney, Paul R; Mareci, Thomas H

    2007-08-01

    Diffusion MRI is a non-invasive imaging technique that allows the measurement of water molecule diffusion through tissue in vivo. The directional features of water diffusion allow one to infer the connectivity patterns prevalent in tissue and possibly track changes in this connectivity over time for various clinical applications. In this paper, we present a novel statistical model for diffusion-weighted MR signal attenuation which postulates that the water molecule diffusion can be characterized by a continuous mixture of diffusion tensors. An interesting observation is that this continuous mixture and the MR signal attenuation are related through the Laplace transform of a probability distribution over symmetric positive definite matrices. We then show that when the mixing distribution is a Wishart distribution, the resulting closed form of the Laplace transform leads to a Rigaut-type asymptotic fractal expression, which has been phenomenologically used in the past to explain the MR signal decay but never with a rigorous mathematical justification until now. Our model not only includes the traditional diffusion tensor model as a special instance in the limiting case, but also can be adjusted to describe complex tissue structure involving multiple fiber populations. Using this new model in conjunction with a spherical deconvolution approach, we present an efficient scheme for estimating the water molecule displacement probability functions on a voxel-by-voxel basis. Experimental results on both simulations and real data are presented to demonstrate the robustness and accuracy of the proposed algorithms. PMID:17570683

  7. Whole Cell Model of Actin Diffusion and Reaction based on Single Molecule Speckle Microscopy Measurements

    NASA Astrophysics Data System (ADS)

    McMillen, Laura; Vavylonis, Dimitrios; Vavylonis Group Team

    It is debated whether transport of actin across the cell by diffusion alone is sufficiently fast to account for the rapid reorganization of actin filaments at the leading edge of motile cells. In order to investigate this question, we created a 3D model of the whole cell that includes reaction and diffusion of actin using a particle Monte Carlo method. For the lamellipodium of the simulated cell we use the model by Smith et al. Biophys. J 104:247 (2013), which includes two diffuse pools of actin, one which is slowly diffusing and the other which diffuses more quickly, as well as a pool of filamentous actin undergoing retrograde flow towards the cell center. We adjusted this model to fit a circular geometry around the whole cell. We also consider actin in the cell center which is either diffusing or in stationary filamentous form, representing cortical actin or actin in stress fibers. The local rates of polymerization and the lifetime distributions of polymerized actin were estimated from single molecule speckle microscopy experiments by the group of N. Watanabe. With this model we are able to simulate prior experiments that monitored the redistribution of actin after photoactivation or fluorescence recovery after photobleaching in various parts of the cell. We find that transport by diffusion is sufficient to fit these data, without the need for an active transport mechanism, however significant concentration gradients may develop at steady state.

  8. Vertical jumping and signaled avoidance

    PubMed Central

    Cándido, Antonio; Maldonado, Antonio; Vila, Jaime

    1988-01-01

    This paper reports an experiment intended to demonstrate that the vertical jumping response can be learned using a signaled-avoidance technique. A photoelectric cell system was used to record the response. Twenty female rats, divided equally into two groups, were exposed to intertrial intervals of either 15 or 40 s. Subjects had to achieve three successive criteria of acquisition: 3, 5, and 10 consecutive avoidance responses. Results showed that both groups learned the avoidance response, requiring increasingly larger numbers of trials as the acquisition criteria increased. No significant effect of intertrial interval was observed. PMID:16812559

  9. Flooding of the diffusion layer in a polymer electrolyte fuel cell: Experimental and modelling analysis

    NASA Astrophysics Data System (ADS)

    Casalegno, A.; Bresciani, F.; Groppi, G.; Marchesi, R.

    Water management is widely investigated because it affects both the performance and the lifetime of polymer electrolyte fuel cells. Membrane hydration is necessary to ensure the high proton conductivity, but too much water can cause flooding and pore obstruction within the cathode gas diffusion layer and the electrode. Experimental studies prove that the characteristics of the diffusion layer have great influence on water transport; the introduction of a micro-porous layer between the gas diffusion layer and the electrode reduces flooding and stabilizes the performance of the fuel cell, although the reason is not fully explained. A quantitative method to characterize water transport through the diffusion layers was proposed in our previous work, and the present work aims to further understand the flooding phenomenon and the role of the micro-porous layer. The improved experimental setup and methodology allow an accurate and reliable evaluation of water transport through the diffusion layer in a wide range of operating conditions. The proposed 1D + 1D model faithfully reproduces the experimental data adopting effective diffusivity values in agreement with literature. The presented experimental and modelling analysis allows us to evaluate the influence of pore obstruction on the effective diffusivity, the overall transport coefficient and water flow through the diffusion layer, elucidating the effect of the micro-porous layer on fuel cell performance and operation stability.

  10. Modelling oxygen self-diffusion in UO2 under pressure

    SciTech Connect

    Cooper, Michael William D.; Grimes, R. W.; Fitzpatrick, M. E.; Chroneos, A.

    2015-10-22

    Access to values for oxygen self-diffusion over a range of temperatures and pressures in UO2 is important to nuclear fuel applications. Here, elastic and expansivity data are used in the framework of a thermodynamic model, the cBΩ model, to derive the oxygen self-diffusion coefficient in UO2 over a range of pressures (0–10 GPa) and temperatures (300–1900 K). Furthermore, the significant reduction in oxygen self-diffusion as a function of increasing hydrostatic pressure, and the associated increase in activation energy, is identified.

  11. Diffusion in a generalized Rubinstein-Duke model of electrophoresis with kinematic disorder

    NASA Astrophysics Data System (ADS)

    Willmann, Richard D.; Schütz, Gunter M.; Jain, Kavita

    2003-06-01

    Using a generalized Rubinstein-Duke model, we prove rigorously that kinematic disorder leaves the prediction of the standard reptation theory for the scaling of the diffusion constant in the limit for long polymer chains D∝L-2 unaffected. Based on an analytical calculation as well as on Monte Carlo simulations, we predict kinematic disorder to affect the center-of-mass diffusion constant of an entangled polymer in the limit for long chains by the same factor as single particle diffusion in a random barrier model.

  12. Efficient simulation of diffusion-based choice RT models on CPU and GPU.

    PubMed

    Verdonck, Stijn; Meers, Kristof; Tuerlinckx, Francis

    2016-03-01

    In this paper, we present software for the efficient simulation of a broad class of linear and nonlinear diffusion models for choice RT, using either CPU or graphical processing unit (GPU) technology. The software is readily accessible from the popular scripting languages MATLAB and R (both 64-bit). The speed obtained on a single high-end GPU is comparable to that of a small CPU cluster, bringing standard statistical inference of complex diffusion models to the desktop platform. PMID:25761391

  13. Protons migrate along interfacial water without significant contributions from jumps between ionizable groups on the membrane surface

    PubMed Central

    Springer, Andreas; Hagen, Volker; Cherepanov, Dmitry A.; Antonenko, Yuri N.; Pohl, Peter

    2011-01-01

    Proton diffusion along membrane surfaces is thought to be essential for many cellular processes such as energy transduction. Commonly, it is treated as a succession of jumps between membrane-anchored proton-binding sites. Our experiments provide evidence for an alternative model. We released membrane-bound caged protons by UV flashes and monitored their arrival at distant sites by fluorescence measurements. The kinetics of the arrival is probed as a function of distance for different membranes and for different water isotopes. We found that proton diffusion along the membrane is fast even in the absence of ionizable groups in the membrane, and it decreases strongly in D2O as compared to H2O. We conclude that the fast proton transport along the membrane is dominated by diffusion via interfacial water, and not via ionizable lipid moieties. PMID:21859952

  14. Protons migrate along interfacial water without significant contributions from jumps between ionizable groups on the membrane surface.

    PubMed

    Springer, Andreas; Hagen, Volker; Cherepanov, Dmitry A; Antonenko, Yuri N; Pohl, Peter

    2011-08-30

    Proton diffusion along membrane surfaces is thought to be essential for many cellular processes such as energy transduction. Commonly, it is treated as a succession of jumps between membrane-anchored proton-binding sites. Our experiments provide evidence for an alternative model. We released membrane-bound caged protons by UV flashes and monitored their arrival at distant sites by fluorescence measurements. The kinetics of the arrival is probed as a function of distance for different membranes and for different water isotopes. We found that proton diffusion along the membrane is fast even in the absence of ionizable groups in the membrane, and it decreases strongly in D(2)O as compared to H(2)O. We conclude that the fast proton transport along the membrane is dominated by diffusion via interfacial water, and not via ionizable lipid moieties. PMID:21859952

  15. Modification of TOUGH2 to Include the Dusty Gas Model for Gas Diffusion

    SciTech Connect

    WEBB, STEPHEN W.

    2001-10-01

    The GEO-SEQ Project is investigating methods for geological sequestration of CO{sub 2}. This project, which is directed by LBNL and includes a number of other industrial, university, and national laboratory partners, is evaluating computer simulation methods including TOUGH2 for this problem. The TOUGH2 code, which is a widely used code for flow and transport in porous and fractured media, includes simplified methods for gas diffusion based on a direct application of Fick's law. As shown by Webb (1998) and others, the Dusty Gas Model (DGM) is better than Fick's Law for modeling gas-phase diffusion in porous media. In order to improve gas-phase diffusion modeling for the GEO-SEQ Project, the EOS7R module in the TOUGH2 code has been modified to include the Dusty Gas Model as documented in this report. In addition, the liquid diffusion model has been changed from a mass-based formulation to a mole-based model. Modifications for separate and coupled diffusion in the gas and liquid phases have also been completed. The results from the DGM are compared to the Fick's law behavior for TCE and PCE diffusion across a capillary fringe. The differences are small due to the relatively high permeability (k = 10{sup -11} m{sup 2}) of the problem and the small mole fraction of the gases. Additional comparisons for lower permeabilities and higher mole fractions may be useful.

  16. Diffusion parameters of indium for silicon process modeling

    NASA Astrophysics Data System (ADS)

    Kizilyalli, I. C.; Rich, T. L.; Stevie, F. A.; Rafferty, C. S.

    1996-11-01

    The diffusion parameters of indium in silicon are investigated. Systematic diffusion experiments in dry oxidizing ambients at temperatures ranging from 800 to 1050 °C are conducted using silicon wafers implanted with indium. Secondary-ion-mass spectrometry (SIMS) is used to analyze the dopant distribution before and after heat treatment. The oxidation-enhanced diffusion parameter [R. B. Fair, in Semiconductor Materials and Process Technology Handbook, edited by G. E. McGuire (Noyes, Park Ridge, NJ, 1988); A. M. R. Lin, D. A. Antoniadis, and R. W. Dutton, J. Electrochem. Soc. Solid-State Sci. Technol. 128, 1131 (1981); D. A. Antoniadis and I. Moskowitz, J. Appl. Phys. 53, 9214 (1982)] and the segregation coefficient at the Si/SiO2 interface [R. B. Fair and J. C. C. Tsai, J. Electrochem. Soc. Solid-State Sci. Technol. 125, 2050 (1978)] (ratio of indium concentration in silicon to that in silicon dioxide) are extracted as a function of temperature using SIMS depth profiles and the silicon process simulator PROPHET [M. Pinto, D. M. Boulin, C. S. Rafferty, R. K. Smith, W. M. Coughran, I. C. Kizilyalli, and M. J. Thoma, in IEDM Technical Digest, 1992, p. 923]. It is observed that the segregation coefficient of indium at the Si/SiO2 interface is mIn≪1, similar to boron; however, unlike boron, the segregation coefficient of indium at the Si/SiO2 interface decreases with increasing temperature. Extraction results are summarized in analytical forms suitable for incorporation into other silicon process simulators. Finally, the validity of the extracted parameters is verified by comparing the simulated and measured SIMS profiles for an indium implanted buried-channel p-channel metal-oxide-semiconductor field-effect-transistor [I. C. Kizilyalli, F. A. Stevie, and J. D. Bude, IEEE Electron Device Lett. (1996)] process that involves a gate oxidation and various other thermal processes.

  17. Kidney Tumor Growth Prediction by Coupling Reaction-Diffusion and Biomechanical Model

    PubMed Central

    Chen, Xinjian; Summers, Ronald M.; Yao, Jianhua

    2014-01-01

    It is desirable to predict the tumor growth rate so that appropriate treatment can be planned in the early stage. Previously, we proposed a finite element method (FEM)-based 3D kidney tumor growth prediction system using longitudinal images. A reaction-diffusion model was applied as the tumor growth model. In this paper, we not only improve the tumor growth model by coupling the reaction-diffusion model with a biomechanical model, but also take the surrounding tissues into account. Different diffusion and biomechanical properties are applied for different tissue types. FEM is employed to simulate the coupled tumor growth model. Model parameters are estimated by optimizing an objective function of overlap accuracy using a hybrid optimization parallel search package (HOPSPACK). The proposed method was tested with kidney CT images of eight tumors from five patients with seven time points. The experimental results showed the performance of the proposed method improved greatly compared to our previous work. PMID:23047857

  18. Computation of the hindrance factor for the diffusion for nanoconfined ions: molecular dynamics simulations versus continuum-based models

    NASA Astrophysics Data System (ADS)

    Zhu, Haochen; Ghoufi, Aziz; Szymczyk, Anthony; Balannec, Béatrice; Morineau, Denis

    2012-06-01

    We report the self-diffusion coefficients and hindrance factor for the diffusion of ions into cylindrical hydrophilic silica nanopores (hydrated silica) determined from molecular dynamics (MD) simulations. We make a comparison with the hindered diffusion coefficients used in continuum-based models of nanofiltration (NF). Hindrance factors for diffusion estimated from the macroscopic hydrodynamic theory were found to be in fair quantitative agreement with MD simulations for a protonated pore, but they strongly overestimate diffusion inside a deprotonated pore.

  19. A diffuse plate boundary model for Indian Ocean tectonics

    NASA Technical Reports Server (NTRS)

    Wiens, D. A.; Demets, C.; Gordon, R. G.; Stein, S.; Argus, D.

    1985-01-01

    It is suggested that motion along the virtually aseismic Owen fracture zone is negligible, so that Arabia and India are contained within a single Indo-Arabian plate divided from the Australian plate by a diffuse boundary. The boundary is a zone of concentrated seismicity and deformation commonly characterized as 'intraplate'. The rotation vector of Australia relative to Indo-Arabia is consistent with the seismologically observed 2 cm/yr of left-lateral strike-slip along the Ninetyeast Ridge, north-south compression in the Central Indian Ocean, and the north-south extension near Chagos.

  20. Cosmic-ray diffusion modeling: Solutions using variational methods

    NASA Astrophysics Data System (ADS)

    Tautz, R. C.; Lerche, I.

    2013-05-01

    The diffusion of energetic particles in turbulent magnetic fields is usually described via the two-point, two-time velocity correlation function. A variational principle is used to determine the characteristic function that results from the Fourier-transformed correlation function. Both for a linear approximation and for the wave vector set to zero, explicit solutions are derived that depend on the Fokker-Planck coefficient of pitch-angle scattering. It is shown that, for an isotropic form of the Fokker-Planck coefficient, the characteristic function is divergent, which can be remedied only by using a Fokker-Planck coefficient that is finite at all pitch angles.

  1. Semi analytical model for the effective grain size profile in the mantle of the Earth: partitioning between diffusion and dislocation creep through the Earth's history

    NASA Astrophysics Data System (ADS)

    Rozel, A. B.; Golabek, G.; Thielmann, M.; Tackley, P.

    2015-12-01

    We present a semi analytical model of mantle convection able to predict the grain size profile of the present day Earth. Grain size evolution has been studied with increasing interest over the last decades but its behavior in both mantle and lithosphere remains largely misunderstood due to its non-linearity. Several recent studies suggest that it might play a fundamental role in localization of deformation in the lithosphere but we focus here on the mantle in which we also observe important processes.We propose a 1D compressible thermal convection model based on the equality of advective heat flux and the integral of viscous dissipation in the whole domain. Imposing mass conservation, our model is able to predict all rheological parameters able to produce both present day average surface velocity and lower mantle viscosity. Composite rheologies involving dislocation creep and grain size dependent diffusion creep are considered. The effect of phase transitions on the grain size is also explicitely taken into account. We present the family of solutions for the activation volume and the viscosity jump at the 660 discontinuity according to any initial choice of activation energy. The scaling laws for rheological parameters obtained are compared to self-consistent evolutionary simulations of mantle convection in 2D spherical annulus geometry considering composite rheologies. The transition between diffusion and dislocation creep due to the cooling of the Earth is illustrated in a set of numerical simulations starting from the physical conditions of the Archean.

  2. Covariant jump conditions in electromagnetism

    NASA Astrophysics Data System (ADS)

    Itin, Yakov

    2012-02-01

    A generally covariant four-dimensional representation of Maxwell's electrodynamics in a generic material medium can be achieved straightforwardly in the metric-free formulation of electromagnetism. In this setup, the electromagnetic phenomena are described by two tensor fields, which satisfy Maxwell's equations. A generic tensorial constitutive relation between these fields is an independent ingredient of the theory. By use of different constitutive relations (local and non-local, linear and non-linear, etc.), a wide area of applications can be covered. In the current paper, we present the jump conditions for the fields and for the energy-momentum tensor on an arbitrarily moving surface between two media. From the differential and integral Maxwell equations, we derive the covariant boundary conditions, which are independent of any metric and connection. These conditions include the covariantly defined surface current and are applicable to an arbitrarily moving smooth curved boundary surface. As an application of the presented jump formulas, we derive a Lorentzian type metric as a condition for existence of the wave front in isotropic media. This result holds for ordinary materials as well as for metamaterials with negative material constants.

  3. Measurement and modeling of CO2 diffusion coefficient in Saline Aquifer at reservoir conditions

    NASA Astrophysics Data System (ADS)

    Azin, Reza; Mahmoudy, Mohamad; Raad, Seyed; Osfouri, Shahriar

    2013-12-01

    Storage of CO2 in deep saline aquifers is a promising techniques to mitigate global warming and reduce greenhouse gases (GHG). Correct measurement of diffusivity is essential for predicting rate of transfer and cumulative amount of trapped gas. Little information is available on diffusion of GHG in saline aquifers. In this study, diffusivity of CO2 into a saline aquifer taken from oil field was measured and modeled. Equilibrium concentration of CO2 at gas-liquid interface was determined using Henry's law. Experimental measurements were reported at temperature and pressure ranges of 32-50°C and 5900-6900 kPa, respectively. Results show that diffusivity of CO2 varies between 3.52-5.98×10-9 m2/s for 5900 kPa and 5.33-6.16×10-9 m2/s for 6900 kPa initial pressure. Also, it was found that both pressure and temperature have a positive impact on the measures of diffusion coefficient. Liquid swelling due to gas dissolution and variations in gas compressibility factor as a result of pressure decay was found negligible. Measured diffusivities were used model the physical model and develop concentration profile of dissolved gas in the liquid phase. Results of this study provide unique measures of CO2 diffusion coefficient in saline aquifer at high pressure and temperature conditions, which can be applied in full-field studies of carbon capture and sequestration projects.

  4. Quasilinear model for energetic particle diffusion in radial and velocity space

    SciTech Connect

    Waltz, R. E.; Staebler, G. M.; Bass, E. M.

    2013-04-15

    A quasilinear model for passive energetic particle (EP) turbulent diffusion in radial and velocity space is fitted and tested against nonlinear gyrokinetic tokamak simulations with the GYRO code [J. Candy and R. E. Waltz, Phys. Rev. Lett. 91, 045001 (2003)]. Off diagonal elements of a symmetric positive definite 2 Multiplication-Sign 2 EP diffusion matrix account for fluxes up radial (energy) gradients driven by energy (radial) gradients of the EP velocity space distribution function. The quasilinear ratio kernel of the model is provided by a simple analytic formula for the EP radial and velocity space EP diffusivity relative to radial thermal ion energy diffusivity at each linear mode of the turbulence driven by the thermal plasma. The TGLF [G. M. Staebler, J. E. Kinsey, and R. E. Waltz, Phys. Plasmas 14, 0055909 (2007); ibid. 15, 0055908 (2008)] tokamak transport model provides the linear mode frequency and growth rates to the kernel as well as the nonlinear spectral weight for each mode.

  5. Quasilinear model for energetic particle diffusion in radial and velocity space

    NASA Astrophysics Data System (ADS)

    Waltz, R. E.; Bass, E. M.; Staebler, G. M.

    2013-04-01

    A quasilinear model for passive energetic particle (EP) turbulent diffusion in radial and velocity space is fitted and tested against nonlinear gyrokinetic tokamak simulations with the GYRO code [J. Candy and R. E. Waltz, Phys. Rev. Lett. 91, 045001 (2003)]. Off diagonal elements of a symmetric positive definite 2×2 EP diffusion matrix account for fluxes up radial (energy) gradients driven by energy (radial) gradients of the EP velocity space distribution function. The quasilinear ratio kernel of the model is provided by a simple analytic formula for the EP radial and velocity space EP diffusivity relative to radial thermal ion energy diffusivity at each linear mode of the turbulence driven by the thermal plasma. The TGLF [G. M. Staebler, J. E. Kinsey, and R. E. Waltz, Phys. Plasmas 14, 0055909 (2007); ibid. 15, 0055908 (2008)] tokamak transport model provides the linear mode frequency and growth rates to the kernel as well as the nonlinear spectral weight for each mode.

  6. Hierarchical modeling of diffusive transport through nanochannels by coupling molecular dynamics with finite element method

    NASA Astrophysics Data System (ADS)

    Ziemys, A.; Kojic, M.; Milosevic, M.; Kojic, N.; Hussain, F.; Ferrari, M.; Grattoni, A.

    2011-06-01

    We present a successful hierarchical modeling approach which accounts for interface effects on diffusivity, ignored in classical continuum theories. A molecular dynamics derived diffusivity scaling scheme is incorporated into a finite element method to model transport through a nanochannel. In a 5 nm nanochannel, the approach predicts 2.2 times slower mass release than predicted by Fick's law by comparing time spent to release 90% of mass. The scheme was validated by predicting experimental glucose diffusion through a nanofluidic membrane with a correlation coefficient of 0.999. Comparison with experiments through a nanofluidic membrane showed interface effects to be crucial. We show robustness of our discrete continuum model in addressing complex diffusion phenomena in biomedical and engineering applications by providing flexible hierarchical coupling of molecular scale effects and preserving computational finite element method speed.

  7. Symmetry breaking in a bulk-surface reaction-diffusion model for signalling networks

    NASA Astrophysics Data System (ADS)

    Rätz, Andreas; Röger, Matthias

    2014-08-01

    Signalling molecules play an important role for many cellular functions. We investigate here a general system of two membrane reaction-diffusion equations coupled to a diffusion equation inside the cell by a Robin-type boundary condition and a flux term in the membrane equations. A specific model of this form was recently proposed by the authors for the GTPase cycle in cells. We investigate here a putative role of diffusive instabilities in cell polarization. By a linearized stability analysis, we identify two different mechanisms. The first resembles a classical Turing instability for the membrane subsystem and requires (unrealistically) large differences in the lateral diffusion of activator and substrate. On the other hand, the second possibility is induced by the difference in cytosolic and lateral diffusion and appears much more realistic. We complement our theoretical analysis by numerical simulations that confirm the new stability mechanism and allow us to investigate the evolution beyond the regime where the linearization applies.

  8. The Diffuse Galactic Gamma-Ray Emission Model for GLAST LAT

    SciTech Connect

    Porter, T.A.; Digel, S.W.; Grenier, I.A.; Moskalenko, I.V.; Strong, A.W.; /Garching, Max Planck Inst., MPE

    2007-06-13

    Diffuse emission from the Milky Way dominates the gamma-ray sky. About 80% of the high-energy luminosity of the Milky Way comes from processes in the interstellar medium. The Galactic diffuse emission traces interactions of energetic particles, primarily protons and electrons, with the interstellar gas and radiation field, thus delivering information about cosmic-ray spectra and interstellar mass in distant locations. Additionally, the Galactic diffuse emission is the celestial foreground for the study of gamma-ray point sources and the extragalactic diffuse gamma-ray emission. We will report on the latest developments in the modeling of the Galactic diffuse emission, which will be used for the Gamma Ray Large Area Space Telescope (GLAST) investigations.

  9. [Estimation of the indoor diffusion of asbestos fibers with the diffusion model for the external environment of Pasquill and Gifford].

    PubMed

    Bellassai, Debora; Spinazzola, Antonio; Silvestri, Stefano

    2015-01-01

    In absence of results of environmental monitoring to proceed with the assessment of occupational exposure, it was developed a model that retraces the one of Pasquill and Gifford, currently used for the estimation of concentrations of pollutants at certain distances from the source in outdoor environment. Purpose of the study is the quantitative estimate of the diffusion of airborne asbestos fibers in function of the distance from the source in an factory where railway carriages were produced during the period when asbestos was sprayed as insulator of the body. The treatment was carried out in a large shed without separation from other operations. The application of the model, given the characteristics of the emitting source, has allowed us to estimate the diffusion of particles inside the shed with an expected decrease in concentration inversely proportional to the distance from the source. By appropriate calculations the concentration by weight has been converted into number offibers by volume, the unit of measure currently used for the definition of asbestos pollution. PMID:26193738

  10. Comparisons of hybrid radiosity-diffusion model and diffusion equation for bioluminescence tomography in cavity cancer detection

    NASA Astrophysics Data System (ADS)

    Chen, Xueli; Yang, Defu; Qu, Xiaochao; Hu, Hao; Liang, Jimin; Gao, Xinbo; Tian, Jie

    2012-06-01

    Bioluminescence tomography (BLT) has been successfully applied to the detection and therapeutic evaluation of solid cancers. However, the existing BLT reconstruction algorithms are not accurate enough for cavity cancer detection because of neglecting the void problem. Motivated by the ability of the hybrid radiosity-diffusion model (HRDM) in describing the light propagation in cavity organs, an HRDM-based BLT reconstruction algorithm was provided for the specific problem of cavity cancer detection. HRDM has been applied to optical tomography but is limited to simple and regular geometries because of the complexity in coupling the boundary between the scattering and void region. In the provided algorithm, HRDM was first applied to three-dimensional complicated and irregular geometries and then employed as the forward light transport model to describe the bioluminescent light propagation in tissues. Combining HRDM with the sparse reconstruction strategy, the cavity cancer cells labeled with bioluminescent probes can be more accurately reconstructed. Compared with the diffusion equation based reconstruction algorithm, the essentiality and superiority of the HRDM-based algorithm were demonstrated with simulation, phantom and animal studies. An in vivo gastric cancer-bearing nude mouse experiment was conducted, whose results revealed the ability and feasibility of the HRDM-based algorithm in the biomedical application of gastric cancer detection.

  11. Comparisons of hybrid radiosity-diffusion model and diffusion equation for bioluminescence tomography in cavity cancer detection.

    PubMed

    Chen, Xueli; Yang, Defu; Qu, Xiaochao; Hu, Hao; Liang, Jimin; Gao, Xinbo; Tian, Jie

    2012-06-01

    Bioluminescence tomography (BLT) has been successfully applied to the detection and therapeutic evaluation of solid cancers. However, the existing BLT reconstruction algorithms are not accurate enough for cavity cancer detection because of neglecting the void problem. Motivated by the ability of the hybrid radiosity-diffusion model (HRDM) in describing the light propagation in cavity organs, an HRDM-based BLT reconstruction algorithm was provided for the specific problem of cavity cancer detection. HRDM has been applied to optical tomography but is limited to simple and regular geometries because of the complexity in coupling the boundary between the scattering and void region. In the provided algorithm, HRDM was first applied to three-dimensional complicated and irregular geometries and then employed as the forward light transport model to describe the bioluminescent light propagation in tissues. Combining HRDM with the sparse reconstruction strategy, the cavity cancer cells labeled with bioluminescent probes can be more accurately reconstructed. Compared with the diffusion equation based reconstruction algorithm, the essentiality and superiority of the HRDM-based algorithm were demonstrated with simulation, phantom and animal studies. An in vivo gastric cancer-bearing nude mouse experiment was conducted, whose results revealed the ability and feasibility of the HRDM-based algorithm in the biomedical application of gastric cancer detection. PMID:22734771

  12. Effect of grain boundary trapping kinetics on diffusion in polycrystalline materials: hydrogen transport in Ni

    NASA Astrophysics Data System (ADS)

    Ilin, Dmitrii N.; Kutsenko, Anton A.; Tanguy, Dome; Olive, Jean-Marc

    2016-03-01

    Due to experimental limitations, the solute distribution in polycrystalline materials is difficult to obtain directly, especially in the vicinity of grain boundaries. Using a newly developed computational method which mixes continuum diffusion equations and atomic scale jump rates, we study the interstitial diffusion in solids containing interfaces taking into account trapping kinetics. The model is applied to hydrogen diffusion in Ni in elementary configurations: fast intergranular diffusion with no segregation (in agreement with Fisher’s model), slow intergranular diffusion with trapping, diffusion through a triple junction and solute redistribution due to stress gradients across the interface. It is shown that the classical diffusion modes can be captured and a new diffusion regime with the effect of grain boundary trapping is revealed.

  13. Lateral diffusion of small compounds in human stratum corneum and model lipid bilayer systems.

    PubMed Central

    Johnson, M E; Berk, D A; Blankschtein, D; Golan, D E; Jain, R K; Langer, R S

    1996-01-01

    An image-based technique of fluorescence recovery after photobleaching (video-FRAP) was used to measure the lateral diffusion coefficients of a series of nine fluorescent probes in two model lipid bilayer systems, dimyristoylphosphatidylcholine (DMPC) and DMPC/cholesterol (40 mol%), as well as in human stratum corneum-extracted lipids. The probes were all lipophilic, varied in molecular weight from 223 to 854 Da, and were chosen to characterize the lateral diffusion of small compounds in these bilayer systems. A clear molecular weight dependence of the lateral diffusion coefficients in DMPC bilayers was observed. Values ranged from 6.72 x 10(-8) to 16.2 x 10(-8) cm2/s, with the smaller probes diffusing faster than the larger ones. Measurements in DMPC/cholesterol bilayers, which represent the most thorough characterization of small-solute diffusion in this system, exhibited a similar molecular weight dependence, although the diffusion coefficients were lower, ranging from 1.62 x 10(-8) to 5.60 x 10(-8) cm2/s. Lateral diffusion measurements in stratum corneum-extracted lipids, which represent a novel examination of diffusion in this unique lipid system, also exhibited a molecular weight dependence, with values ranging from 0.306 x 10(-8) to 2.34 x 10(-8) cm2/s. Literature data showed that these strong molecular weight dependencies extend to even smaller compounds than those examined in this study. A two-parameter empirical expression is presented that describes the lateral diffusion coefficient in terms of the solute's molecular weight and captures the size dependence over the range examined. This study illustrates the degree to which small-molecule lateral diffusion in stratum corneum-extracted lipids can be represented by diffusion in DMPC and DMPC/cholesterol bilayer systems, and may lead to a better understanding of small-solute transport across human stratum corneum. PMID:8913603

  14. Modeling cation diffusion in compacted water-saturated sodium bentonite at low ionic strength.

    PubMed

    Bourg, Ian C; Sposito, Garrison; Bourg, Alain C M

    2007-12-01

    Sodium bentonites are used as barrier materials for the isolation of landfills and are under consideration for a similar use in the subsurface storage of high-level radioactive waste. The performance of these barriers is determined in large part by molecular diffusion in the bentonite pore space. We tested two current models of cation diffusion in bentonite against experimental data on the relative apparent diffusion coefficients of two representative cations, sodium and strontium. On the "macropore/nanopore" model, solute molecules are divided into two categories, with unequal pore-scale diffusion coefficients, based on location: in macropores or in interlayer nanopores. On the "surface diffusion" model, solute molecules are divided into categories based on chemical speciation: dissolved or adsorbed. The macropore/nanopore model agrees with all experimental data at partial montmorillonite dry densities ranging from 0.2 (a dilute bentonite gel) to 1.7 kg dm(-3) (a highly compacted bentonite with most of its pore space located in interlayer nanopores), whereas the surface diffusion model fails at partial montmorillonite dry densities greater than about 1.3 kg dm(-3). PMID:18186346

  15. Modelling the effect of diffuse light on canopy photosynthesis in controlled environments

    NASA Technical Reports Server (NTRS)

    Cavazzoni, James; Volk, Tyler; Tubiello, Francesco; Monje, Oscar; Janes, H. W. (Principal Investigator)

    2002-01-01

    A layered canopy model was used to analyze the effects of diffuse light on canopy gross photosynthesis in controlled environment plant growth chambers, where, in contrast to the field, highly diffuse light can occur at high irradiance. The model suggests that high diffuse light fractions (approximately 0.7) and irradiance (1400 micromoles m-2 s-1) may enhance crop life-cycle canopy gross photosynthesis for hydroponic wheat by about 20% compared to direct light at the same irradiance. Our simulations suggest that high accuracy is not needed in specifying diffuse light fractions in chambers between approximately 0.7 and 1, because simulated photosynthesis for closed canopies plateau in this range. We also examined the effect of leaf angle distribution on canopy photosynthesis under growth chamber conditions, as these distributions determine canopy extinction coefficients for direct and diffuse light. We show that the spherical leaf angle distribution is not suitable for modeling photosynthesis of planophile canopies (e.g., soybean and peanut) in growth chambers. Also, the absorption of the light reflected from the surface below the canopy should generally be included in model simulations, as the corresponding albedo values in the photosynthetically active range may be quite high in growth chambers (e.g., approximately 0.5). In addition to the modeling implications, our results suggest that diffuse light conditions should be considered when drawing conclusions from experiments in controlled environments.

  16. Modelling the effect of diffuse light on canopy photosynthesis in controlled environments.

    PubMed

    Cavazzoni, James; Volk, Tyler; Tubiello, Francesco; Monje, Oscar

    2002-01-01

    A layered canopy model was used to analyze the effects of diffuse light on canopy gross photosynthesis in controlled environment plant growth chambers, where, in contrast to the field, highly diffuse light can occur at high irradiance. The model suggests that high diffuse light fractions (approximately 0.7) and irradiance (1400 micromoles m-2 s-1) may enhance crop life-cycle canopy gross photosynthesis for hydroponic wheat by about 20% compared to direct light at the same irradiance. Our simulations suggest that high accuracy is not needed in specifying diffuse light fractions in chambers between approximately 0.7 and 1, because simulated photosynthesis for closed canopies plateau in this range. We also examined the effect of leaf angle distribution on canopy photosynthesis under growth chamber conditions, as these distributions determine canopy extinction coefficients for direct and diffuse light. We show that the spherical leaf angle distribution is not suitable for modeling photosynthesis of planophile canopies (e.g., soybean and peanut) in growth chambers. Also, the absorption of the light reflected from the surface below the canopy should generally be included in model simulations, as the corresponding albedo values in the photosynthetically active range may be quite high in growth chambers (e.g., approximately 0.5). In addition to the modeling implications, our results suggest that diffuse light conditions should be considered when drawing conclusions from experiments in controlled environments. PMID:12882223

  17. Modeling cation diffusion in compacted water-saturatedNa-bentonite at low ionic strength

    SciTech Connect

    Bourg, Ian C.; Sposito, Garrison; Bourg, Alain C.M.

    2007-08-28

    Sodium bentonites are used as barrier materials for the isolation of landfills and are under consideration for a similar use in the subsurface storage of high-level radioactive waste. The performance of these barriers is determined in large part by molecular diffusion in the bentonite pore space. We tested two current models of cation diffusion in bentonite against experimental data on the relative apparent diffusion coefficients of two representative cations, sodium and strontium. On the 'macropore/nanopore' model, solute molecules are divided into two categories, with unequal pore-scale diffusion coefficients, based on location: in macropores or in interlayer nanopores. On the 'surface diffusion' model, solute molecules are divided into categories based on chemical speciation: dissolved or adsorbed. The macropore/nanopore model agrees with all experimental data at partial montmorillonite dry densities ranging from 0.2 (a dilute bentonite gel) to 1.7 kg dm{sup -3} (a highly compacted bentonite with most of its pore space located in interlayer nanopores), whereas the surface diffusion model fails at partial montmorillonite dry densities greater than about 1.2 kg dm{sup -3}.

  18. A Bayesian hierarchical diffusion model decomposition of performance in Approach–Avoidance Tasks

    PubMed Central

    Krypotos, Angelos-Miltiadis; Beckers, Tom; Kindt, Merel; Wagenmakers, Eric-Jan

    2015-01-01

    Common methods for analysing response time (RT) tasks, frequently used across different disciplines of psychology, suffer from a number of limitations such as the failure to directly measure the underlying latent processes of interest and the inability to take into account the uncertainty associated with each individual's point estimate of performance. Here, we discuss a Bayesian hierarchical diffusion model and apply it to RT data. This model allows researchers to decompose performance into meaningful psychological processes and to account optimally for individual differences and commonalities, even with relatively sparse data. We highlight the advantages of the Bayesian hierarchical diffusion model decomposition by applying it to performance on Approach–Avoidance Tasks, widely used in the emotion and psychopathology literature. Model fits for two experimental data-sets demonstrate that the model performs well. The Bayesian hierarchical diffusion model overcomes important limitations of current analysis procedures and provides deeper insight in latent psychological processes of interest. PMID:25491372

  19. Diffusive to quasi-ballistic random laser: incoherent and coherent models

    NASA Astrophysics Data System (ADS)

    Guerin, W.; Chong, Y. D.; Baudouin, Q.; Liertzer, M.; Rotter, S.; Kaiser, R.

    2016-09-01

    We study the crossover between the diffusive and quasi-ballistic regimes of random lasers. In particular, we compare incoherent models based on the diffusion equation and the radiative transfer equation (RTE), which neglect all wave effects, with a coherent wave model for the random laser threshold. We show that both the incoherent and the coherent models predict qualitatively similar thresholds, with a smooth transition from a diffuse to a quasi-ballistic regime. The shape of the intensity distribution in the sample as predicted by the RTE model at threshold is also in good agreement with the coherent model. The approximate incoherent models thus provide useful analytical predictions for the threshold of random lasers as well as the shape of the random laser modes at threshold.

  20. Research article: Watershed management councils and scientific models: Using diffusion literature to explain adoption

    USGS Publications Warehouse

    King, M.D.; Burkardt, N.; Clark, B.T.

    2006-01-01

    Recent literature on the diffusion of innovations concentrates either specifically on public adoption of policy, where social or environmental conditions are the dependent variables for adoption, or on private adoption of an innovation, where emphasis is placed on the characteristics of the innovation itself. This article uses both the policy diffusion literature and the diffusion of innovation literature to assess watershed management councils' decisions to adopt, or not adopt, scientific models. Watershed management councils are a relevant case study because they possess both public and private attributes. We report on a survey of councils in the United States that was conducted to determine the criteria used when selecting scientific models for studying watershed conditions. We found that specific variables from each body of literature play a role in explaining the choice to adopt scientific models by these quasi-public organizations. The diffusion of innovation literature contributes to an understanding of how organizations select models by confirming the importance of a model's ability to provide better data. Variables from the policy diffusion literature showed that watershed management councils that employ consultants are more likely to use scientific models. We found a gap between those who create scientific models and those who use these models. We recommend shrinking this gap through more communication between these actors and advancing the need for developers to provide more technical assistance.

  1. Lateral diffusion in model membranes is independent of the size of the hydrophobic region of molecules.

    PubMed Central

    Balcom, B J; Petersen, N O

    1993-01-01

    We have systematically investigated the probe size and shape dependence of lateral diffusion in model dimyristoyl phosphatidylcholine membranes. Linear hydrophobic polymers, which differ in length by an order of magnitude, were used to explore the effect on the lateral diffusion coefficient of hydrodynamic restrictions in the bilayer interior. The polymers employed are isoprenoid alcohols--citronellol, solanesol, and dolichol. Tracer lateral diffusion coefficients were measured by fluorescence photobleaching recovery. Despite the large difference in lengths, the nitrobenzoxadiazole labelled alcohols all diffuse at the rate of lipid self-diffusion (5.0 x 10(-12) m2 s-1, 29 degrees C) in the liquid crystal phase. Companion measurements in isotropic polymer solution, in gel phase lipid membranes and with nonpolar fluorescent polyaromatic hydrocarbons, show a marked dependence of the lateral diffusion coefficient on the probe molecule size. Our results in the liquid crystal phase are in accord with free area theory which asserts that lateral diffusion in the membrane is restricted by the surface-free area. Probe molecules which are significantly longer than the host phospholipid, seven times longer in the case of dolichol, are still restricted in their lateral motion by the surface properties of the bilayer in the liquid crystal phase. Fluorescence quenching experiments indicate that the nitrobenzoxadiazole label does not reside at the aqueous interface, although it must reside in close proximity according to the diffusion measurements. PMID:8218892

  2. Diffusion transport model for pelagic sediments on the Mid-Atlantic Ridge

    NASA Astrophysics Data System (ADS)

    Mitchell, Neil C.

    1995-10-01

    The diffusion model is potentially useful for quantifying the effect of downslope gravity transport on sedimentation rate variations, which are commonly found between Deep Sea Drilling Project and Ocean Drilling Program sites. If appropriate, the model and stratigraphy could be used, for example, to constrain the amount and timing of fault block rotation. Deep Tow profiler records from the French-American Mid-Ocean Undersea Study area of the Mid-Atlantic Ridge are examined to determine whether they are consistent with a diffusion model. Sedimentary contacts with basement show that a variety of processes may be operating, some of which are inconsistent with the diffusion model. For example, there are moats around some contacts which are typical of scouring or nondeposition due to high current velocities. More than half of the contacts, however, show onlapping, which is qualitatively consistent with the diffusion model. Sediments generally fill low areas of the topography and have smooth surfaces, as expected from a diffusion model. Where the fluxes of sediment entering a basin are constant, the diffusion model predicts that the sediment surface should evolve to a parabola (the steady state solution). Some 20 curved surfaces in the profiler data were digitized and least squares parabolas fitted to them with rms errors of less than 1 m. The slopes of the model parabolas provide values for the ratio of sediment flux to diffusivity at the edges of the basins (steep surfaces are produced by low diffusivity or high fluxes). This ratio is combined with estimates of the fluxes to determine the apparent sediment diffusivity, Kapp, for eacri basin. Flux is estimated by assuming the abyssal hill topography acts as a simple sediment trap, so that the lateral flux equals the width of a basin's pelagic catchment area times the area's mean sedimentation rate S. Using this method, median Kapp is 0.04-0.11 m2 yr-1 (assuming S = 10-30 m m.y.-1). Variations in Kapp and the assumptions

  3. Understanding the physics of bungee jumping

    NASA Astrophysics Data System (ADS)

    Heck, André; Uylings, Peter; Kędzierska, Ewa

    2010-01-01

    Changing mass phenomena like the motion of a falling chain, the behaviour of a falling elastic bar or spring, and the motion of a bungee jumper surprise many a physicist. In this article we discuss the first phase of bungee jumping, when the bungee jumper falls, but the bungee rope is still slack. In instructional material this phase is often considered a free fall, but when the mass of the bungee rope is taken into account, the bungee jumper reaches acceleration greater than g. This result is contrary to the usual experience with free falling objects and therefore hard to believe for many a person, even an experienced physicist. It is often a starting point for heated discussions about the quality of the experiments and the physics knowledge of the experimentalist, or it may even prompt complaints about the quality of current physics education. But experiments do reveal the truth and students can do them supported by information and communication technology (ICT) tools. We report on a research project done by secondary school students and use their work to discuss how measurements with sensors, video analysis of self-recorded high-speed video clips and computer modelling allow study of the physics of bungee jumping.

  4. A model for diffuse and global irradiation on horizontal surfaces

    SciTech Connect

    Jain, P.C. )

    1990-01-01

    The intensity of the direct radiation and the diffuse radiation at any time on a horizontal surface are each expressed as fractions of the intensity of the extraterrestrial radiation. Using these and assuming a random distribution of the bright sunshine hours and not too wide variations in the values of the transmission coefficients, a number of relations for estimating the global and the diffuse irradiation are derived. Two of the relations derived, including the Angstroem correlation for estimating the global irradiation, are already known empirically while several new correlations have been derived. The relations derived in this paper are: (i) H{sub d}/H{sub o} = a{sub 1} + b{sub 1} (S/S{sub o}); (ii) H/H{sub o} = A{sub 2} + b{sub 2} (S/S{sub o}); (iii) H{sub D}/H{sub o} = a{sub 3} + b{sub 3} (H/H{sub o}); (iv) H{sub D}/H = a{sub 4} + b{sub 4} (h{sub o}/) (v) H/(H{minus}H{sub D}) = a{sub 5} + b{sub 5} (S{sub o}/S); (vi) H{sub D}/(H{minus}H{sub D}) = A{sub 6} + b{sub 6} (S{sub o}/S); (vii) H/H{sub D} = a{sub 7} + b{sub 7} (S/S{sub o}); (viii) H/H{sub D} = A{sub 1} + A{sub 2} (S/S{sub o}) + A{sub 3} (S/S{sub o}){sup 2}. The study identifies three independent basic parameters and the constants appearing in the various equations as simple functions of these three basic parameters. This provides unification and inter-relationships between the various constants. Experimental data for the diffuse irradiation, the global irradiation and the bright sunshine duration for Macerata (Italy), Salisbury and Bulawayo (Zimbabwe) is found to show good correlation for the linear eqns (i) to (vii), and the nature and the interrelationships of the constants is found to be as predicted by theory.

  5. Relative Intensity Influences the Degree of Correspondence of Jump Squats and Push Jerks to Countermovement Jumps.

    PubMed

    Cushion, Emily J; Goodwin, Jon E; Cleather, Daniel J

    2016-05-01

    Cushion, EJ, Goodwin, JE, and Cleather, DJ. Relative intensity influences the degree of correspondence of jump squats and push jerks to countermovement jumps. J Strength Cond Res 30(5): 1255-1264, 2016-The aim of this study was to determine the mechanical similarity between push jerk (PJ) and jump squat (JS) to countermovement jump (CMJ) and further understand the effect increasing external load may have on this relationship. Eight physically trained men (age 22 ± 3; height 176 ± 7 kg; weight 83 ± 8 kg) performed an unloaded CMJ followed by JS under a range of loads (10, 25, 35, and 50% 1RM back squat) and PJ (30, 50, 65, and 75% 1RM push jerk). A portable force platform and high-speed camera both collecting at 250 Hz were used to establish joint moments and impulse during the propulsive phase of the movements. A standard inverse dynamics model was used to determine joint moment and impulse at the hip, knee, and ankle. Significant correlations (p ≤ 0.05) were shown between CMJ knee joint moment and JS knee joint moment at 25% load and PJ knee joint moment at 30 and 50% load. Significant correlations were also observed between CMJ knee joint impulse and JS knee joint impulse at 10% load and PJ knee joint moment at 30 and 65% load. Significant correlation was also observed between CMJ hip joint impulse and PJ hip joint impulse at 30% load. No significant joint × load interaction was shown as load increased for either PJ or JS. Results from the study suggest partial correspondence between PJ and JS to CMJ, where a greater mechanical similarity was observed between the PJ and CMJ. This interaction is load and joint dependent where lower relative loads showed greatest mechanical similarity. Therefore using lower relative loads when programming may provide a greater transfer of training effect. PMID:26439777

  6. Modeling of the interplay between single-file diffusion and conversion reaction in mesoporous systems

    SciTech Connect

    Wang, Jing

    2013-01-11

    We analyze the spatiotemporal behavior of species concentrations in a diffusion-mediated conversion reaction which occurs at catalytic sites within linear pores of nanometer diameter. A strict single-file (no passing) constraint occurs in the diffusion within such narrow pores. Both transient and steady-state behavior is precisely characterized by kinetic Monte Carlo simulations of a spatially discrete lattice–gas model for this reaction–diffusion process considering various distributions of catalytic sites. Exact hierarchical master equations can also be developed for this model. Their analysis, after application of mean-field type truncation approximations, produces discrete reaction–diffusion type equations (mf-RDE). For slowly varying concentrations, we further develop coarse-grained continuum hydrodynamic reaction–diffusion equations (h-RDE) incorporating a precise treatment of single-file diffusion (SFD) in this multispecies system. Noting the shortcomings of mf-RDE and h-RDE, we then develop a generalized hydrodynamic (GH) formulation of appropriate gh-RDE which incorporates an unconventional description of chemical diffusion in mixed-component quasi-single-file systems based on a refined picture of tracer diffusion for finite-length pores. The gh-RDE elucidate the non-exponential decay of the steady-state reactant concentration into the pore and the non-mean-field scaling of the reactant penetration depth. Then an extended model of a catalytic conversion reaction within a functionalized nanoporous material is developed to assess the effect of varying the reaction product – pore interior interaction from attractive to repulsive. The analysis is performed utilizing the generalized hydrodynamic formulation of the reaction-diffusion equations which can reliably capture the complex interplay between reaction and restricted transport for both irreversible and reversible reactions.

  7. A control theoretic approach to venom immunotherapy with state jumps.

    PubMed

    Chang, H; Astolfi, A; Shim, H

    2010-01-01

    We investigate a model-based control method to boost the immune response. We apply this control method to select the appropriate immune response between the Th1 and Th2 responses. The idea of state jump is discussed using hybrid models notation. To implement the control idea we propose physically available methods. PMID:21095900

  8. A method for modeling oxygen diffusion in an agent-based model with application to host-pathogen infection

    SciTech Connect

    Plimpton, Steven J.; Sershen, Cheryl L.; May, Elebeoba E.

    2015-01-01

    This paper describes a method for incorporating a diffusion field modeling oxygen usage and dispersion in a multi-scale model of Mycobacterium tuberculosis (Mtb) infection mediated granuloma formation. We implemented this method over a floating-point field to model oxygen dynamics in host tissue during chronic phase response and Mtb persistence. The method avoids the requirement of satisfying the Courant-Friedrichs-Lewy (CFL) condition, which is necessary in implementing the explicit version of the finite-difference method, but imposes an impractical bound on the time step. Instead, diffusion is modeled by a matrix-based, steady state approximate solution to the diffusion equation. Moreover, presented in figure 1 is the evolution of the diffusion profiles of a containment granuloma over time.

  9. A method for modeling oxygen diffusion in an agent-based model with application to host-pathogen infection

    DOE PAGESBeta

    Plimpton, Steven J.; Sershen, Cheryl L.; May, Elebeoba E.

    2015-01-01

    This paper describes a method for incorporating a diffusion field modeling oxygen usage and dispersion in a multi-scale model of Mycobacterium tuberculosis (Mtb) infection mediated granuloma formation. We implemented this method over a floating-point field to model oxygen dynamics in host tissue during chronic phase response and Mtb persistence. The method avoids the requirement of satisfying the Courant-Friedrichs-Lewy (CFL) condition, which is necessary in implementing the explicit version of the finite-difference method, but imposes an impractical bound on the time step. Instead, diffusion is modeled by a matrix-based, steady state approximate solution to the diffusion equation. Moreover, presented in figuremore » 1 is the evolution of the diffusion profiles of a containment granuloma over time.« less

  10. A kinetic model for molecular diffusion through pores.

    PubMed

    D'Agostino, Tommaso; Salis, Samuele; Ceccarelli, Matteo

    2016-07-01

    The number of pathogens developing multiple drug resistance is ever increasing. The impact on healthcare systems is huge and the need for novel antibiotics as well a new way to develop them is urgent, especially against Gram-negative bacteria. The first defense of these bacteria is the outer membrane, where unspecific protein channels (porins) modulate nutrients passive diffusion. Also polar antibiotics enter through this path and down-regulation and/or mutation of porins are very common in drug resistant strains. Our inability to come up with novel effective antibiotics mostly relies upon the insufficient comprehension of the key molecular features enabling better penetration through porins. Molecular dynamics simulations offer an extraordinary tool in the study of the dynamics of biological systems; however, one of the major drawbacks of this method is that its use is currently restricted to study time scales of the order of microsecond. Enhanced sampling methods like Metadynamics have been recently used to investigate the diffusion of antibiotics through bacterial porins. The main limitation is that dynamical properties cannot be estimated because of the different potential that the systems under study are experiencing. Recently, the scope of Metadynamics has been extended. By applying an a posteriori analysis one can obtain rates of transitions and rate-limiting steps of the process under study, directly comparable with kinetic data extracted from electrophysiology experiments. In this work, we apply this method to the study of the permeability of Escherichia coli's OmpF with respect to Meropenem, finding good agreement with the residence time obtained analyzing experimental current noise. This article is part of a Special Issue entitled: Membrane Proteins edited by J.C. Gumbart and Sergei Noskov. PMID:26796683

  11. A model of space-fractional-order diffusion in the glial scar.

    PubMed

    Prodanov, Dimiter; Delbeke, Jean

    2016-08-21

    Implantation of neuroprosthetic electrodes induces a stereotypical state of neuroinflammation, which is thought to be detrimental for the neurons surrounding the electrode. Mechanisms of this type of neuroinflammation are still poorly understood. Recent experimental and theoretical results point to a possible role of the diffusing species in this process. The paper considers a model of anomalous diffusion occurring in the glial scar around a chronic implant in two simple geometries - a separable rectilinear electrode and a cylindrical electrode, which are solvable exactly. We describe a hypothetical extended source of diffusing species and study its concentration profile in steady-state conditions. Diffusion transport is assumed to obey a fractional-order Fick law, derivable from physically realistic assumptions using a fractional calculus approach. Presented fractional-order distribution morphs into integer-order diffusion in the case of integral fractional exponents. The model demonstrates that accumulation of diffusing species can occur and the scar properties (i.e. tortuosity, fractional order, scar thickness) and boundary conditions can influence such accumulation. The observed shape of the concentration profile corresponds qualitatively with GFAP profiles reported in the literature. The main difference with respect to the previous studies is the explicit incorporation of the apparatus of fractional calculus without assumption of an ad hoc tortuosity parameter. The approach can be adapted to other studies of diffusion in biological tissues, for example of biomolecules or small drug molecules. PMID:27179458

  12. The utility of diffusion chambers as models for the description of drug disposition.

    PubMed

    Ganzinger, U; Schiel, H; Georgopoulos, A; Gumhold, G

    1986-07-01

    Tissue cages were employed to explore the diffusion processes of several cephalosporins into extravascular fluids. Concentrations of cefotaxime in serum and in subcutaneous chambers increased proportionally to the amount of the drug injected. Administration of single equal doses of cephalothin, cephaloridine and cefotaxime resulted in different concentration-time courses in the serum and in diffusion chambers. These observations suggest that diffusion chambers are linked to the tissue at the implantation site. None of the classical compartmental approaches can be applied to evaluate the kinetics of drug diffusion into tissue cages. Correlations of total or non-protein bound drug concentrations in tissue cages to those in the peripheral compartment assumed concentration and time dependent diffusion processes. No specific diffusion constant based on the law of Fick could be derived for the diffusion chambers used in this study. Concentration-time courses in serum and interstitial fluid can be simultaneously evaluated according to pharmacokinetic-pharmacodynamic models. Based on the equation describing the effect site this model can be used to simulate drug concentrations in tissue cages by varying the dose size or the dose interval. PMID:3759726

  13. A novel rumor diffusion model considering the effect of truth in online social media

    NASA Astrophysics Data System (ADS)

    Sun, Ling; Liu, Yun; Zeng, Qing-An; Xiong, Fei

    2015-12-01

    In this paper, we propose a model to investigate how truth affects rumor diffusion in online social media. Our model reveals a relation between rumor and truth — namely, when a rumor is diffusing, the truth about the rumor also diffuses with it. Two patterns of the agents used to identify rumor, self-identification and passive learning are taken into account. Combining theoretical proof and simulation analysis, we find that the threshold value of rumor diffusion is negatively correlated to the connectivity between nodes in the network and the probability β of agents knowing truth. Increasing β can reduce the maximum density of the rumor spreaders and slow down the generation speed of new rumor spreaders. On the other hand, we conclude that the best rumor diffusion strategy must balance the probability of forwarding rumor and the probability of agents losing interest in the rumor. High spread rate λ of rumor would lead to a surge in truth dissemination which will greatly limit the diffusion of rumor. Furthermore, in the case of unknown λ, increasing β can effectively reduce the maximum proportion of agents who do not know the truth, but cannot narrow the rumor diffusion range in a certain interval of β.

  14. Hydraulic jumps in inhomogeneous strongly coupled toroidal dust flows

    NASA Astrophysics Data System (ADS)

    Piel, Alexander; Wilms, Jochen

    2016-07-01

    The inhomogeneous flow of strongly coupled dust particles in a toroidal particle trap with harmonic radial confinement is analyzed in the incompressible fluid limit. It is shown that the flow can spontaneously generate shock-like events, which are similar to the hydraulic jump in open channel flows. A definition of the Froude number for this model is given and the critical speed is recovered as the group velocity of surface waves. This hydraulic model is compared with molecular-dynamics simulations, which show that a sudden bifurcation of the flow lines and a localized temperature peak appear just at the point where the critical condition for the hydraulic jump is located.

  15. A hybrid transport-diffusion model for radiative transfer in absorbing and scattering media

    SciTech Connect

    Roger, M.; Caliot, C.; Crouseilles, N.; Coelho, P.J.

    2014-10-15

    A new multi-scale hybrid transport-diffusion model for radiative transfer is proposed in order to improve the efficiency of the calculations close to the diffusive regime, in absorbing and strongly scattering media. In this model, the radiative intensity is decomposed into a macroscopic component calculated by the diffusion equation, and a mesoscopic component. The transport equation for the mesoscopic component allows to correct the estimation of the diffusion equation, and then to obtain the solution of the linear radiative transfer equation. In this work, results are presented for stationary and transient radiative transfer cases, in examples which concern solar concentrated and optical tomography applications. The Monte Carlo and the discrete-ordinate methods are used to solve the mesoscopic equation. It is shown that the multi-scale model allows to improve the efficiency of the calculations when the medium is close to the diffusive regime. The proposed model is a good alternative for radiative transfer at the intermediate regime where the macroscopic diffusion equation is not accurate enough and the radiative transfer equation requires too much computational effort.

  16. A hybrid transport-diffusion model for radiative transfer in absorbing and scattering media

    NASA Astrophysics Data System (ADS)

    Roger, M.; Caliot, C.; Crouseilles, N.; Coelho, P. J.

    2014-10-01

    A new multi-scale hybrid transport-diffusion model for radiative transfer is proposed in order to improve the efficiency of the calculations close to the diffusive regime, in absorbing and strongly scattering media. In this model, the radiative intensity is decomposed into a macroscopic component calculated by the diffusion equation, and a mesoscopic component. The transport equation for the mesoscopic component allows to correct the estimation of the diffusion equation, and then to obtain the solution of the linear radiative transfer equation. In this work, results are presented for stationary and transient radiative transfer cases, in examples which concern solar concentrated and optical tomography applications. The Monte Carlo and the discrete-ordinate methods are used to solve the mesoscopic equation. It is shown that the multi-scale model allows to improve the efficiency of the calculations when the medium is close to the diffusive regime. The proposed model is a good alternative for radiative transfer at the intermediate regime where the macroscopic diffusion equation is not accurate enough and the radiative transfer equation requires too much computational effort.

  17. Assessing cognitive processes with diffusion model analyses: a tutorial based on fast-dm-30

    PubMed Central

    Voss, Andreas; Voss, Jochen; Lerche, Veronika

    2015-01-01

    Diffusion models can be used to infer cognitive processes involved in fast binary decision tasks. The model assumes that information is accumulated continuously until one of two thresholds is hit. In the analysis, response time distributions from numerous trials of the decision task are used to estimate a set of parameters mapping distinct cognitive processes. In recent years, diffusion model analyses have become more and more popular in different fields of psychology. This increased popularity is based on the recent development of several software solutions for the parameter estimation. Although these programs make the application of the model relatively easy, there is a shortage of knowledge about different steps of a state-of-the-art diffusion model study. In this paper, we give a concise tutorial on diffusion modeling, and we present fast-dm-30, a thoroughly revised and extended version of the fast-dm software (Voss and Voss, 2007) for diffusion model data analysis. The most important improvement of the fast-dm version is the possibility to choose between different optimization criteria (i.e., Maximum Likelihood, Chi-Square, and Kolmogorov-Smirnov), which differ in applicability for different data sets. PMID:25870575

  18. Uncertainty quantification in modeling of microfluidic T-sensor based diffusion immunoassay.

    PubMed

    Jha, Aman Kumar; Bahga, Supreet Singh

    2016-01-01

    Comparison of experimental data with modeling predictions is essential for making quantitative measurements of species properties, such as diffusion coefficients and species concentrations using a T-sensor. To make valid comparisons between experimental data and model predictions, it is necessary to account for uncertainty in model predictions due to uncertain values of model parameters. We present an analysis of uncertainty induced in model predictions of a T-sensor based competitive diffusion immunoassay due to uncertainty in diffusion constants, binding reaction rate constants, and inlet flow speed. We use a non-intrusive stochastic uncertainty quantification method employing polynomial chaos expansions to represent the dependence of uncertain species concentrations on the uncertainty in model parameters. Our simulations show that the uncertainties in model parameters lead to significant spatially varying uncertainty in predicted concentration. In particular, the diffusivity of fluorescently labeled probe antigen dominates the overall uncertainty. The predicted uncertainty in fluorescence intensity is minimum near the centerline of T-sensor and relatively high in the regions with gradients in fluorescence intensity. We show that using centerline fluorescence intensity instead of first derivative of fluorescence intensity as the system response for measuring sample antigen concentration in T-sensor based competitive diffusion immunoassay leads to lower uncertainty and higher detection sensitivity. PMID:26858817

  19. Using a Quasipotential Transformation for Modeling Diffusion Media inPolymer-Electrolyte Fuel Cells

    SciTech Connect

    Weber, Adam Z.; Newman, John

    2008-08-29

    In this paper, a quasipotential approach along with conformal mapping is used to model the diffusion media of a polymer-electrolyte fuel cell. This method provides a series solution that is grid independent and only requires integration along a single boundary to solve the problem. The approach accounts for nonisothermal phenomena, two-phase flow, correct placement of the electronic potential boundary condition, and multilayer media. The method is applied to a cathode diffusion medium to explore the interplay between water and thermal management and performance, the impact of the rib-to-channel ratio, and the existence of diffusion under the rib and flooding phenomena.

  20. Bayesian inference for Markov jump processes with informative observations.

    PubMed

    Golightly, Andrew; Wilkinson, Darren J

    2015-04-01

    In this paper we consider the problem of parameter inference for Markov jump process (MJP) representations of stochastic kinetic models. Since transition probabilities are intractable for most processes of interest yet forward simulation is straightforward, Bayesian inference typically proceeds through computationally intensive methods such as (particle) MCMC. Such methods ostensibly require the ability to simulate trajectories from the conditioned jump process. When observations are highly informative, use of the forward simulator is likely to be inefficient and may even preclude an exact (simulation based) analysis. We therefore propose three methods for improving the efficiency of simulating conditioned jump processes. A conditioned hazard is derived based on an approximation to the jump process, and used to generate end-point conditioned trajectories for use inside an importance sampling algorithm. We also adapt a recently proposed sequential Monte Carlo scheme to our problem. Essentially, trajectories are reweighted at a set of intermediate time points, with more weight assigned to trajectories that are consistent with the next observation. We consider two implementations of this approach, based on two continuous approximations of the MJP. We compare these constructs for a simple tractable jump process before using them to perform inference for a Lotka-Volterra system. The best performing construct is used to infer the parameters governing a simple model of motility regulation in Bacillus subtilis. PMID:25720091