Sample records for kasvava inimmju surve

  1. 25 CFR 39.806 - How is the SURV calculated?

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 25 Indians 1 2014-04-01 2014-04-01 false How is the SURV calculated? 39.806 Section 39.806 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR EDUCATION THE INDIAN SCHOOL EQUALIZATION PROGRAM Determining the Amount Necessary To Sustain an Academic or Residential Program § 39.806 How is the SURV...

  2. 25 CFR 39.806 - How is the SURV calculated?

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 25 Indians 1 2012-04-01 2011-04-01 true How is the SURV calculated? 39.806 Section 39.806 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR EDUCATION THE INDIAN SCHOOL EQUALIZATION PROGRAM Determining the Amount Necessary To Sustain an Academic or Residential Program § 39.806 How is the SURV...

  3. 25 CFR 39.806 - How is the SURV calculated?

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 25 Indians 1 2013-04-01 2013-04-01 false How is the SURV calculated? 39.806 Section 39.806 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR EDUCATION THE INDIAN SCHOOL EQUALIZATION PROGRAM Determining the Amount Necessary To Sustain an Academic or Residential Program § 39.806 How is the SURV...

  4. 25 CFR 39.806 - How is the SURV calculated?

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 25 Indians 1 2010-04-01 2010-04-01 false How is the SURV calculated? 39.806 Section 39.806 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR EDUCATION THE INDIAN SCHOOL EQUALIZATION PROGRAM Determining the Amount Necessary To Sustain an Academic or Residential Program § 39.806 How is the SURV...

  5. 25 CFR 39.806 - How is the SURV calculated?

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 25 Indians 1 2011-04-01 2011-04-01 false How is the SURV calculated? 39.806 Section 39.806 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR EDUCATION THE INDIAN SCHOOL EQUALIZATION PROGRAM Determining the Amount Necessary To Sustain an Academic or Residential Program § 39.806 How is the SURV...

  6. DeepSurv: personalized treatment recommender system using a Cox proportional hazards deep neural network.

    PubMed

    Katzman, Jared L; Shaham, Uri; Cloninger, Alexander; Bates, Jonathan; Jiang, Tingting; Kluger, Yuval

    2018-02-26

    Medical practitioners use survival models to explore and understand the relationships between patients' covariates (e.g. clinical and genetic features) and the effectiveness of various treatment options. Standard survival models like the linear Cox proportional hazards model require extensive feature engineering or prior medical knowledge to model treatment interaction at an individual level. While nonlinear survival methods, such as neural networks and survival forests, can inherently model these high-level interaction terms, they have yet to be shown as effective treatment recommender systems. We introduce DeepSurv, a Cox proportional hazards deep neural network and state-of-the-art survival method for modeling interactions between a patient's covariates and treatment effectiveness in order to provide personalized treatment recommendations. We perform a number of experiments training DeepSurv on simulated and real survival data. We demonstrate that DeepSurv performs as well as or better than other state-of-the-art survival models and validate that DeepSurv successfully models increasingly complex relationships between a patient's covariates and their risk of failure. We then show how DeepSurv models the relationship between a patient's features and effectiveness of different treatment options to show how DeepSurv can be used to provide individual treatment recommendations. Finally, we train DeepSurv on real clinical studies to demonstrate how it's personalized treatment recommendations would increase the survival time of a set of patients. The predictive and modeling capabilities of DeepSurv will enable medical researchers to use deep neural networks as a tool in their exploration, understanding, and prediction of the effects of a patient's characteristics on their risk of failure.

  7. SurvExpress: an online biomarker validation tool and database for cancer gene expression data using survival analysis.

    PubMed

    Aguirre-Gamboa, Raul; Gomez-Rueda, Hugo; Martínez-Ledesma, Emmanuel; Martínez-Torteya, Antonio; Chacolla-Huaringa, Rafael; Rodriguez-Barrientos, Alberto; Tamez-Peña, José G; Treviño, Victor

    2013-01-01

    Validation of multi-gene biomarkers for clinical outcomes is one of the most important issues for cancer prognosis. An important source of information for virtual validation is the high number of available cancer datasets. Nevertheless, assessing the prognostic performance of a gene expression signature along datasets is a difficult task for Biologists and Physicians and also time-consuming for Statisticians and Bioinformaticians. Therefore, to facilitate performance comparisons and validations of survival biomarkers for cancer outcomes, we developed SurvExpress, a cancer-wide gene expression database with clinical outcomes and a web-based tool that provides survival analysis and risk assessment of cancer datasets. The main input of SurvExpress is only the biomarker gene list. We generated a cancer database collecting more than 20,000 samples and 130 datasets with censored clinical information covering tumors over 20 tissues. We implemented a web interface to perform biomarker validation and comparisons in this database, where a multivariate survival analysis can be accomplished in about one minute. We show the utility and simplicity of SurvExpress in two biomarker applications for breast and lung cancer. Compared to other tools, SurvExpress is the largest, most versatile, and quickest free tool available. SurvExpress web can be accessed in http://bioinformatica.mty.itesm.mx/SurvExpress (a tutorial is included). The website was implemented in JSP, JavaScript, MySQL, and R.

  8. SurvExpress: An Online Biomarker Validation Tool and Database for Cancer Gene Expression Data Using Survival Analysis

    PubMed Central

    Aguirre-Gamboa, Raul; Gomez-Rueda, Hugo; Martínez-Ledesma, Emmanuel; Martínez-Torteya, Antonio; Chacolla-Huaringa, Rafael; Rodriguez-Barrientos, Alberto; Tamez-Peña, José G.; Treviño, Victor

    2013-01-01

    Validation of multi-gene biomarkers for clinical outcomes is one of the most important issues for cancer prognosis. An important source of information for virtual validation is the high number of available cancer datasets. Nevertheless, assessing the prognostic performance of a gene expression signature along datasets is a difficult task for Biologists and Physicians and also time-consuming for Statisticians and Bioinformaticians. Therefore, to facilitate performance comparisons and validations of survival biomarkers for cancer outcomes, we developed SurvExpress, a cancer-wide gene expression database with clinical outcomes and a web-based tool that provides survival analysis and risk assessment of cancer datasets. The main input of SurvExpress is only the biomarker gene list. We generated a cancer database collecting more than 20,000 samples and 130 datasets with censored clinical information covering tumors over 20 tissues. We implemented a web interface to perform biomarker validation and comparisons in this database, where a multivariate survival analysis can be accomplished in about one minute. We show the utility and simplicity of SurvExpress in two biomarker applications for breast and lung cancer. Compared to other tools, SurvExpress is the largest, most versatile, and quickest free tool available. SurvExpress web can be accessed in http://bioinformatica.mty.itesm.mx/SurvExpress (a tutorial is included). The website was implemented in JSP, JavaScript, MySQL, and R. PMID:24066126

  9. SurvMicro: assessment of miRNA-based prognostic signatures for cancer clinical outcomes by multivariate survival analysis.

    PubMed

    Aguirre-Gamboa, Raul; Trevino, Victor

    2014-06-01

    MicroRNAs (miRNAs) play a key role in post-transcriptional regulation of mRNA levels. Their function in cancer has been studied by high-throughput methods generating valuable sources of public information. Thus, miRNA signatures predicting cancer clinical outcomes are emerging. An important step to propose miRNA-based biomarkers before clinical validation is their evaluation in independent cohorts. Although it can be carried out using public data, such task is time-consuming and requires a specialized analysis. Therefore, to aid and simplify the evaluation of prognostic miRNA signatures in cancer, we developed SurvMicro, a free and easy-to-use web tool that assesses miRNA signatures from publicly available miRNA profiles using multivariate survival analysis. SurvMicro is composed of a wide and updated database of >40 cohorts in different tissues and a web tool where survival analysis can be done in minutes. We presented evaluations to portray the straightforward functionality of SurvMicro in liver and lung cancer. To our knowledge, SurvMicro is the only bioinformatic tool that aids the evaluation of multivariate prognostic miRNA signatures in cancer. SurvMicro and its tutorial are freely available at http://bioinformatica.mty.itesm.mx/SurvMicro. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  10. SurvNet: a web server for identifying network-based biomarkers that most correlate with patient survival data.

    PubMed

    Li, Jun; Roebuck, Paul; Grünewald, Stefan; Liang, Han

    2012-07-01

    An important task in biomedical research is identifying biomarkers that correlate with patient clinical data, and these biomarkers then provide a critical foundation for the diagnosis and treatment of disease. Conventionally, such an analysis is based on individual genes, but the results are often noisy and difficult to interpret. Using a biological network as the searching platform, network-based biomarkers are expected to be more robust and provide deep insights into the molecular mechanisms of disease. We have developed a novel bioinformatics web server for identifying network-based biomarkers that most correlate with patient survival data, SurvNet. The web server takes three input files: one biological network file, representing a gene regulatory or protein interaction network; one molecular profiling file, containing any type of gene- or protein-centred high-throughput biological data (e.g. microarray expression data or DNA methylation data); and one patient survival data file (e.g. patients' progression-free survival data). Given user-defined parameters, SurvNet will automatically search for subnetworks that most correlate with the observed patient survival data. As the output, SurvNet will generate a list of network biomarkers and display them through a user-friendly interface. SurvNet can be accessed at http://bioinformatics.mdanderson.org/main/SurvNet.

  11. [WebSurvCa: web-based estimation of death and survival probabilities in a cohort].

    PubMed

    Clèries, Ramon; Ameijide, Alberto; Buxó, Maria; Vilardell, Mireia; Martínez, José Miguel; Alarcón, Francisco; Cordero, David; Díez-Villanueva, Ana; Yasui, Yutaka; Marcos-Gragera, Rafael; Vilardell, Maria Loreto; Carulla, Marià; Galceran, Jaume; Izquierdo, Ángel; Moreno, Víctor; Borràs, Josep M

    2018-01-19

    Relative survival has been used as a measure of the temporal evolution of the excess risk of death of a cohort of patients diagnosed with cancer, taking into account the mortality of a reference population. Once the excess risk of death has been estimated, three probabilities can be computed at time T: 1) the crude probability of death associated with the cause of initial diagnosis (disease under study), 2) the crude probability of death associated with other causes, and 3) the probability of absolute survival in the cohort at time T. This paper presents the WebSurvCa application (https://shiny.snpstats.net/WebSurvCa/), whereby hospital-based and population-based cancer registries and registries of other diseases can estimate such probabilities in their cohorts by selecting the mortality of the relevant region (reference population). Copyright © 2017 SESPAS. Publicado por Elsevier España, S.L.U. All rights reserved.

  12. ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes

    PubMed Central

    Hashemikhabir, Seyedsasan; Budak, Gungor; Janga, Sarath Chandra

    2016-01-01

    Survival analysis in biomedical sciences is generally performed by correlating the levels of cellular components with patients’ clinical features as a common practice in prognostic biomarker discovery. While the common and primary focus of such analysis in cancer genomics so far has been to identify the potential prognostic genes, alternative splicing – a posttranscriptional regulatory mechanism that affects the functional form of a protein due to inclusion or exclusion of individual exons giving rise to alternative protein products, has increasingly gained attention due to the prevalence of splicing aberrations in cancer transcriptomes. Hence, uncovering the potential prognostic exons can not only help in rationally designing exon-specific therapeutics but also increase specificity toward more personalized treatment options. To address this gap and to provide a platform for rational identification of prognostic exons from cancer transcriptomes, we developed ExSurv (https://exsurv.soic.iupui.edu), a web-based platform for predicting the survival contribution of all annotated exons in the human genome using RNA sequencing-based expression profiles for cancer samples from four cancer types available from The Cancer Genome Atlas. ExSurv enables users to search for a gene of interest and shows survival probabilities for all the exons associated with a gene and found to be significant at the chosen threshold. ExSurv also includes raw expression values across the cancer cohort as well as the survival plots for prognostic exons. Our analysis of the resulting prognostic exons across four cancer types revealed that most of the survival-associated exons are unique to a cancer type with few processes such as cell adhesion, carboxylic, fatty acid metabolism, and regulation of T-cell signaling common across cancer types, possibly suggesting significant differences in the posttranscriptional regulatory pathways contributing to prognosis. PMID:27528797

  13. Cohort profile: the German ClinSurv HIV project--a multicentre open clinical cohort study supplementing national HIV surveillance.

    PubMed

    Bätzing-Feigenbaum, J; Kollan, C; Kühne, A; Matysiak-Klose, D; Gunsenheimer-Bartmeyer, B; Hamouda, O

    2011-05-01

    New forms of HIV/AIDS therapy require new surveillance instruments to meet shifting public health demands. The Clinical Surveillance of HIV Disease (ClinSurv HIV) project was established in 1999 as a collaboration between major HIV treatment centres in Germany and the Robert Koch Institute (RKI). The project contributes to national HIV surveillance and focuses on the changing epidemiology of HIV/AIDS after the introduction of new therapies in 1995. ClinSurv HIV is designed as an open multicentre observational cohort study of HIV-infected patients. Anonymized data on diagnoses, treatment and laboratory parameters are collected in a standardized format. Data are currently sampled biannually via 11 centres specializing in HIV diagnosis and care within the legal framework of the German Protection against Infection Act [Infektionsschutzgesetz (IfSG)]. A total of 14874 patients were enrolled in the study by 30 June 2009. Of these, 10221 patients (68.7%) were enrolled after 1 January 1999 and 6006 patients (40.4%) were known to have been diagnosed as positive for HIV before 1999. Evaluation indicators, such as the number of newly enrolled patients per half-year period, loss to follow-up, completeness of data per case, availability of data per possible clinical contact, and internal quality control parameters, show a very stable evolution in the cohort, which although open, can be observed. Comparison with the national HIV surveillance data suggests a high degree of representativeness according to major demographic variables. Bearing in mind the obvious strengths and weaknesses discussed, the German ClinSurv HIV cohort provides a broad range of research opportunities in the field of HIV/AIDS both within Germany and in international collaborative research.

  14. The Snapshot A-Star SurveY (SASSY)

    NASA Astrophysics Data System (ADS)

    Garani, Jasmine; Nielsen, Eric L.; Marchis, Franck; Liu, Michael C.; Macintosh, Bruce; Rajan, Abhijith; De Rosa, Robert J.; Wang, Jason; Esposito, Thomas; Best, William M. J.; Bowler, Brendan P.; Dupuy, Trent J.; Ruffio, Jean-Baptise

    2017-01-01

    We present the Snapshot A-Star SurveY (SASSY), an adaptive optics survey conducted using NIRC2 on the Keck II telescope to search for young, self-luminious planets and brown dwarfs (M > 5MJup) around high mass stars (M > 1.5 M⊙). We describe a custom data-reduction pipeline developed for the coronagraphic observations of our 200 target stars. Our data analysis method includes basic near infrared data processing (flat-field correction, bad pixel removal, distortion correction) as well as performing PSF subtraction through a Reference Differential Imaging algorithm based on a library of PSFs derived from the observations using the pyKLIP routine. We present early results from the survey including planet and brown dwarf candidates and the status of ongoing follow-up observations. Utilizing the high contrast of Keck NIRC2 coronagraphic observations, SASSY reaches sensitivity to brown dwarfs and planetary mass companions at separations between 0.6'' and 4''. With over 200 stars observed we are tripling the number of high-mass stars imaged at these contrasts and sensitivities compared to previous surveys. This work was supported by the NSF REU program at the SETI Institute and NASA grant NNX14AJ80G.

  15. Calculation of Direct Antiretroviral Treatment Costs and Potential Cost Savings by Using Generics in the German HIV ClinSurv Cohort

    PubMed Central

    Stoll, Matthias; Kollan, Christian; Bergmann, Frank; Bogner, Johannes; Faetkenheuer, Gerd; Fritzsche, Carlos; Hoeper, Kirsten; Horst, Heinz-August; van Lunzen, Jan; Plettenberg, Andreas; Reuter, Stefan; Rockstroh, Jürgen; Stellbrink, Hans-Jürgen; Hamouda, Osamah; Bartmeyer, Barbara

    2011-01-01

    Background/Aim of the Study The study aimed to determine the cost impacts of antiretroviral drugs by analysing a long-term follow-up of direct costs for combined antiretroviral therapy, cART,-regimens in the nationwide long-term observational multi-centre German HIV ClinSurv Cohort. The second aim was to develop potential cost saving strategies by modelling different treatment scenarios. Methods Antiretroviral regimens (ART) from 10,190 HIV-infected patients from 11 participating ClinSurv study centres have been investigated since 1996. Biannual data cART,-initiation, cART-changes, surrogate markers, clinical events and the Centre of Disease Control- (CDC)-stage of HIV disease are reported. Treatment duration was calculated on a daily basis via the documented dates for the beginning and end of each antiretroviral drug treatment. Prices were calculated for each individual regimen based on actual office sales prices of the branded pharmaceuticals distributed by the license holder including German taxes. Results During the 13-year follow-up period, 21,387,427 treatment days were covered. Cumulative direct costs for antiretroviral drugs of €812,877,356 were determined according to an average of €42.08 per day (€7.52 to € 217.70). Since cART is widely used in Germany, the costs for an entire regimen increased by 13.5%. Regimens are more expensive in the advanced stages of HIV disease. The potential for cost savings was calculated using non-nucleotide-reverse-transcriptase-inhibitor, NNRTI, more frequently instead of ritonavir-boosted protease inhibitor, PI/r, in first line therapy. This calculation revealed cumulative savings of 10.9% to 19.8% of daily treatment costs (50% and 90% substitution of PI/r, respectively). Substituting certain branded drugs by generic drugs showed potential cost savings of between 1.6% and 31.8%. Conclusions Analysis of the data of this nationwide study reflects disease-specific health services research and will give insights into the

  16. Tuberculosis among people living with HIV/AIDS in the German ClinSurv HIV Cohort: long-term incidence and risk factors.

    PubMed

    Karo, Basel; Haas, Walter; Kollan, Christian; Gunsenheimer-Bartmeyer, Barbara; Hamouda, Osamah; Fiebig, Lena

    2014-03-19

    Tuberculosis (TB) still presents a leading cause of morbidity and mortality among people living with HIV/AIDS (PLWHA), including those on antiretroviral therapy. In this study, we aimed to determine the long-term incidence density rate (IDR) of TB and risk factors among PLWHA in relation to combination antiretroviral therapy (cART)-status. Data of PLWHA enrolled from 2001 through 2011 in the German ClinSurv HIV Cohort were investigated using survival analysis and Cox regression. TB was diagnosed in 233/11,693 PLWHA either at enrollment (N = 62) or during follow-up (N = 171). The TB IDR during follow-up was 0.37 cases per 100 person-years (PY) overall [95% CI, 0.32-0.43], and was higher among patients who never started cART and among patients originating from Sub-Saharan Africa (1.23 and 1.20 per 100PY, respectively). In two multivariable analyses, both patients (I) who never started cART and (II) those on cART shared the same risk factors for TB, namely: originating from Sub-Saharan Africa compared to Germany (I, hazard ratio (HR); [95% CI]) 4.05; [1.87-8.78] and II, HR 5.15 [2.76-9.60], CD4+ cell count <200 cells/μl (I, HR 8.22 [4.36-15.51] and II, HR 1.90 [1.14-3.15]) and viral load >5 log10 copies/ml (I, HR 2.51 [1.33-4.75] and II, HR 1.77 [1.11-2.82]). Gender, age or HIV-transmission risk group were not independently associated with TB. In the German ClinSurv HIV cohort, patients originating from Sub-Saharan Africa, with low CD4+ cell count or high viral load at enrollment were at increased risk of TB even after cART initiation. As patients might be latently infected with Mycobacterium tuberculosis complex, early screening for latent TB infection and implementing isoniazid preventive therapy in line with available recommendations is crucial.

  17. Calculation of direct antiretroviral treatment costs and potential cost savings by using generics in the German HIV ClinSurv cohort.

    PubMed

    Stoll, Matthias; Kollan, Christian; Bergmann, Frank; Bogner, Johannes; Faetkenheuer, Gerd; Fritzsche, Carlos; Hoeper, Kirsten; Horst, Heinz-August; van Lunzen, Jan; Plettenberg, Andreas; Reuter, Stefan; Rockstroh, Jürgen; Stellbrink, Hans-Jürgen; Hamouda, Osamah; Bartmeyer, Barbara

    2011-01-01

    BACKGROUND/AIM OF THE STUDY: The study aimed to determine the cost impacts of antiretroviral drugs by analysing a long-term follow-up of direct costs for combined antiretroviral therapy, cART, -regimens in the nationwide long-term observational multi-centre German HIV ClinSurv Cohort. The second aim was to develop potential cost saving strategies by modelling different treatment scenarios. Antiretroviral regimens (ART) from 10,190 HIV-infected patients from 11 participating ClinSurv study centres have been investigated since 1996. Biannual data cART-initiation, cART-changes, surrogate markers, clinical events and the Centre of Disease Control- (CDC)-stage of HIV disease are reported. Treatment duration was calculated on a daily basis via the documented dates for the beginning and end of each antiretroviral drug treatment. Prices were calculated for each individual regimen based on actual office sales prices of the branded pharmaceuticals distributed by the license holder including German taxes. During the 13-year follow-up period, 21,387,427 treatment days were covered. Cumulative direct costs for antiretroviral drugs of €812,877,356 were determined according to an average of €42.08 per day (€7.52 to € 217.70). Since cART is widely used in Germany, the costs for an entire regimen increased by 13.5%. Regimens are more expensive in the advanced stages of HIV disease. The potential for cost savings was calculated using non-nucleotide-reverse-transcriptase-inhibitor, NNRTI, more frequently instead of ritonavir-boosted protease inhibitor, PI/r, in first line therapy. This calculation revealed cumulative savings of 10.9% to 19.8% of daily treatment costs (50% and 90% substitution of PI/r, respectively). Substituting certain branded drugs by generic drugs showed potential cost savings of between 1.6% and 31.8%. Analysis of the data of this nationwide study reflects disease-specific health services research and will give insights into the cost impacts of

  18. Sex Work as an Emerging Risk Factor for Human Immunodeficiency Virus Seroconversion Among People who Inject Drugs in the SurvUDI Network.

    PubMed

    Blouin, Karine; Leclerc, Pascale; Morissette, Carole; Roy, Élise; Blanchette, Caty; Parent, Raymond; Serhir, Bouchra; Alary, Michel

    2016-10-01

    Recent analyses have shown an emerging positive association between sex work and human immunodeficiency virus (HIV) incidence among people who inject drugs (PWIDs) in the SurvUDI network. Participants who had injected in the past 6 months were recruited across the Province of Quebec and in the city of Ottawa, mainly in harm reduction programs. They completed a questionnaire and provided gingival exudate for HIV antibody testing. The associations with HIV seroconversion were tested with a Cox proportional hazard model using time-dependent covariables including the main variable of interest, sexual activity (sex work; no sex work; sexually inactive). The final model included significant variables and confounders of the associations with sexual activity. Seventy-two HIV seroconversions were observed during 5239.2 person-years (py) of follow-up (incidence rates: total = 1.4/100 py; 95% confidence interval [CI], 1.1-1.7; sex work = 2.5/100 py; 95% CI, 1.5-3.6; no sex work = 0.8/100 py; 95% CI, 0.5-1.2; sexually inactive = 1.8/100 py; 95% CI, 1.1-2.5). In the final multivariate model, HIV incidence was significantly associated with sexual activity (sex work: adjusted hazard ratio [AHR], 2.19; 95% CI, 1.13-4.25; sexually inactive: AHR, 1.62; 95% CI, 0.92-2.88), and injection with a needle/syringe used by someone else (AHR, 2.84; 95% CI, 1.73-4.66). Sex work is independently associated with HIV incidence among PWIDs. At the other end of the spectrum of sexual activity, sexually inactive PWIDs have a higher HIV incidence rate, likely due to more profound dependence leading to increased vulnerabilities, which may include mental illness, poverty, and social exclusion. Further studies are needed to understand whether the association between sex work and HIV is related to sexual transmission or other vulnerability factors.

  19. Defense Planning and Programming Categories: A Special Tool for Special Needs. Volume 3. Appendix E. Proposed Expanded DPPC Structure

    DTIC Science & Technology

    1990-04-01

    SURVEILLANCE & WARNING SYTEMS A2C COMMAND & CONTROL ACTIVITIES A2D SPACE ACTIVITIES (STRATEGIC CONTROL & SURV) A2E STRAT CONTROL & SURV: COMMUNICATIONS A2F...STRATEGIC AIR DEFENSE 0501802A NIKE-AJAX (ARNS) (H) AID STRATEGIC AIR DEFENSE AIC SPACE DEFENSE OI02115N F-6 Squadrons (H) AIC SPACE DEFENSE 0102215N ABM ...WARNING SYTEMS 0102310F NCHC - TW/AA Systems A2B SURVEILLANCE & WARNIIIG SYTEMS 0102311F NCMC - Space Defense Systems A21 SURVEILLANCE & WARNING SYTEMS

  20. Genetic correlation of longevity with growth, post-mortem, docility and some morphological traits in the Pirenaica beef cattle breed.

    PubMed

    Varona, L; Moreno, C; Altarriba, J

    2012-06-01

    Survival or longevity is an economically relevant trait in cattle. However, it is not currently included in cattle selection criteria because of the delayed recording of phenotypic data and the high computational demand of survival techniques under proportional hazard models. The identification of longevity-correlated traits that can be early registered in lifetime would therefore be very useful for beef cattle selection processes. The aim of this study was to estimate the genetic correlation of survival (SURV) with: growth - birth weight (BW), weight at 120 days (W120), weight at 210 days (W210); carcass - cold carcass weight (CCW), conformation (CON), fatness (FAT) and meat colour (COL); teat morphology - teat thickness (TT), teat length (TL) and udder depth (UD); leg morphology - forward (FL) and backward legs (BL); milk production (MILK) and docility (DOC). In the statistical analysis, SURV was measured in discrete-time intervals and modelled via a sequential threshold model. A series of independent bivariate Bayesian analyses between cow survival and each recorded trait were carried out. The posterior mean estimates (and posterior standard deviation) for the heritability of SURV was 0.05 (0.01); and for the relevant genetic correlations with SURV were 0.07 (0.04), 0.12 (0.05), 0.10 (0.05), 0.15 (0.05), -0.18 (0.06), 0.33 (0.06) and 0.27 (0.15) for BW, W120, W210, CCW, CON, FAT and COL, respectively.

  1. The Snapshot A Star SurveY (SASSY)

    NASA Astrophysics Data System (ADS)

    Garani, Jasmine I.; Nielsen, Eric; Marchis, Franck; Liu, Michael C.; Macintosh, Bruce; Rajan, Abhijith; De Rosa, Robert J.; Jinfei Wang, Jason; Esposito, Thomas M.; Best, William M. J.; Bowler, Brendan; Dupuy, Trent; Ruffio, Jean-Baptiste

    2018-01-01

    The Snapshot A Star Survey (SASSY) is an adaptive optics survey conducted using NIRC2 on the Keck II telescope to search for young, self-luminous planets and brown dwarfs (M > 5MJup) around high mass stars (M > 1.5 M⊙). We present the results of a custom data reduction pipeline developed for the coronagraphic observations of our 200 target stars. Our data analysis method includes basic near infrared data processing (flat-field correction, bad pixel removal, distortion correction) as well as performing PSF subtraction through a Reference Differential Imaging algorithm based on a library of PSFs derived from the observations using the pyKLIP routine. We present the results from the pipeline of a few stars from the survey with analysis of candidate companions. SASSY is sensitive to companions 600,000 times fainter than the host star withint the inner few arcseconds, allowing us to detect companions with masses ~8MJup at age 110 Myr. This work was supported by the Leadership Alliance's Summer Research Early Identification Program at Stanford University, the NSF REU program at the SETI Institute and NASA grant NNX14AJ80G.

  2. Analysis of projected replacement and costs for potential aquatic barriers maintained by MaineDOT.

    DOT National Transportation Integrated Search

    2014-02-01

    Recent discussions around State and federal stream crossing regulations have focused on resolving existing barriers : to fish movement created by pipe culverts associated with transportation infrastructure. Approximately 30% of : Maine has been surve...

  3. National survey of US public transit agency experience with and response to extreme weather events.

    DOT National Transportation Integrated Search

    2016-09-01

    Extreme weather events pose serious challenges public transit systems. They disrupt transit operations, impair service quality, increase threats to public safety, and damage infrastructure. This report presents findings from a June 2016 national surv...

  4. MAMMARY GLAND DEVELOPMENT AS A SENSITIVE END-POINT FOLLOWING ACUTE PERNATAL EXPOSURE TO A LOW DOSE ATRAZINE METABOLITE MIXTURE IN FEMALE LONG EVANS RATS

    EPA Science Inventory

    In order to characterize the potential developmental effects of atrazine (ATR) metabolites at low doses, an environmentally-based mixture (EBM) of ATR and its metabolites hydroxyatrazine, diaminochlorotriazine, deethylatrazine, and deisopropylatrazine was formulated based on surv...

  5. Assessing patterns of fish demographics and habitat in stream networks

    EPA Science Inventory

    Effective habitat restoration planning requires correctly anticipating demographic responses to altered habitats. New applications of Passive Integrated Transponder (PIT) tag technology to fish-habitat research have provided critical insights into fish movement, growth, and surv...

  6. Application of restoration scenarios to basin-scale demographics of coho salmon inferred from pit-tags

    EPA Science Inventory

    Effective habitat restoration planning requires correctly anticipating demographic responses to altered habitats. New applications of Passive Integrated Transponder (PIT) tag technology to fish-habitat research have provided critical insights into fish movement, growth, and surv...

  7. Geospatial analysis of bicycle network "level of traffic stress", bicycle mode choice behavior, and bicycle crashes for risk factor identification.

    DOT National Transportation Integrated Search

    2015-08-01

    Small and medium-sized cities need publicly acceptable criteria for bicycle infrastructure improvements. This report explores the : effectiveness of one proposed system of bicycle infrastructure criteria using data from a state-of-the-art travel surv...

  8. Validation of contractor HMA testing data in the materials acceptance process.

    DOT National Transportation Integrated Search

    2010-08-01

    "This study conducted an analysis of the SCDOT HMA specification. A Research Steering Committee comprised of SCDOT, FHWA, and Industry representatives provided oversight of the process. The research process included a literature review, a brief surve...

  9. DISTRIBUTION OF SELECTED INVASIVE PLANTS IN RIPARIAN ECOSYSTEMS OF THE WESTERN UNITED STATES

    EPA Science Inventory

    Riparian ecosystems typically exhibit high levels of plant species richness, physical disturbance, and interconnectedness; characteristics that may favor establishment and spread of invasive plant species. To assess the magnitude of this invasion, we organized an extensive surve...

  10. The bathymetric distribution of intertidal eelgrass Zostera marina L. in three coastal estuaries of Oregon

    EPA Science Inventory

    Distributions of native eelgrass Zostera marina L. within the intertidal and shallow subtidal zones of three Oregon coastal estuaries (Tillamook, Yaquina, and Alsea) were determined by digital classification of aerial color infrared (CIR) orthophotographs. Stratified random surv...

  11. High-speed and intercity passenger rail testing strategy.

    DOT National Transportation Integrated Search

    2013-05-01

    This high-speed and intercity passenger rail (HSIPR) testing strategy addresses the requirements for testing of high-speed train sets and technology before introduction to the North American railroad system. The report documents the results of a surv...

  12. SURVEILLANCE FOR WATERBORNE-DISEASE OUTBREAKS - UNITED STATES, 1999-2000

    EPA Science Inventory

    PROBLEM/CONDITION: Since 1971, CDC, the U.S. Environmental Protection Agency (EPA), and the Council of State and Territorial Epidemiologists (CSTE) have maintained a collaborative surveillance system for the occurrences and causes of waterborne-disease outbreaks (WBDOs).This surv...

  13. ENDANGERED AQUATIC VERTEBRATES: COMPARATIVE AND PROBABILISTIC-BASED TOXICOLOGY

    EPA Science Inventory

    It has previously been assumed that endangered, threatened, and candidate endangered species (collectively known as “listed” species) are uniquely sensitive to chemicals. The purpose of this cooperative research effort (U.S. Environmental Protection Agency, U.S. Geological Surve...

  14. Old moms with new tricks: modeling the effects of age-specific spawning behaviors in Pacific Ocean perch

    EPA Science Inventory

    In commercially exploited, long-lived fish species, age structure plays an important role in determining population stability and resilience to human and environmental impacts. The often observed increase in energy allocation per offspring by older females can improve larval surv...

  15. Improved decision making in construction using virtual site visits.

    DOT National Transportation Integrated Search

    2003-01-01

    This study explored the dynamics of information exchange involving field issues relating to construction and the assistance that a virtual site visit can provide to the field decision-making process. Such a process can be used for inspection and surv...

  16. Application of circular consensus sequencing and network analysis to characterize the bovine IgG repertoire

    USDA-ARS?s Scientific Manuscript database

    Background: Vertebrate immune systems generate diverse repertoires of antibodies capable of mediating response to a variety of antigens. Next generation sequencing methods provide unique approaches to a number of immuno-based research areas including antibody discovery and engineering, disease surve...

  17. A Multi-Perspective Study on Safety Performance at the Colorado DOT

    DOT National Transportation Integrated Search

    2018-01-01

    This effort focuses on the safety culture within CDOT and the effectiveness of the CDOT safety programs on improving safety culture. The study used a survey approach based on interviews with senior safety officials to determine the scope of the surve...

  18. GLOBAL EMERGING INFECTIONS SURVEILLANCE AND RESPONSE SYSTEM

    EPA Science Inventory

    Department of Defense (DoD) Gonococcal Isolate Surveillance Project (GISP). The DoD Global Emerging Infections Surveillance and Response System (DoD-GEIS) partners with the Centers for Disease Control and Prevention (CDC) and the World Health Organization (WHO) in the global surv...

  19. Detection technology for IVHS, Volume I : final report

    DOT National Transportation Integrated Search

    1996-10-01

    This report, as part of the U.S. Department of Transportation (DOT) Comprehensive Truck Size and Weight (TS&W) Study, provides factual information and analysis of the U.S. freight hauling truck fleet, and is based on the Truck Inventory and Use Surve...

  20. Optimizing Vacuum Assisted Resin Transfer Moulding (VARTM) Processing Parameters to Improve Part Quality

    NASA Astrophysics Data System (ADS)

    Polowick, Christopher

    The Low Cost Composites (LCC) group at Carleton University is studying out-of-autoclave composite manufacturing processes such as Vacuum Assisted Resin Transfer Moulding (VARTM) and Closed Cavity Bag Moulding (CCBM). These processes are used to produce inexpensive and high performance components for the GeoSurv II, an Unmanned Aerial Vehicle (UAV) being developed at Carleton University. This research has focused on optimizing VARTM processing parameters to reduce the weight and improve the strength and surface finish of GeoSurv II composite components. A simulation was developed to model resin flow through in VARTM infusions and was used to simulate mould filling and resin emptying of the GeoSurv II inverted V-empennage and mission avionics hatch. The resin infusion schemes of these parts were designed to ensure full preform resin saturation, and minimize thickness variations. An experimental study of the effects of the presence of a corner on composite thickness, void content, and strength was conducted. It was found that inside corners result in local increases in thickness and void content due to poor preform compaction. A novel bagging technique was developed to improve corner compaction, and this technique was shown to reduce thickness variability and void content. The strength, void content, and thickness variation were found to be heavily dependent on corner radius, with corner radii greater than 6.4 mm displaying the greatest improvement in performance for the layups considered. The design of the empennage and hatch mould incorporated the results of this study to improve the quality of these components.

  1. An Approach to Addressing Selection Bias in Survival Analysis

    PubMed Central

    Carlin, Caroline S.; Solid, Craig A.

    2014-01-01

    This work proposes a frailty model that accounts for non-random treatment assignment in survival analysis. Using Monte Carlo simulation, we found that estimated treatment parameters from our proposed endogenous selection survival model (esSurv) closely parallel the consistent two-stage residual inclusion (2SRI) results, while offering computational and interpretive advantages. The esSurv method greatly enhances computational speed relative to 2SRI by eliminating the need for bootstrapped standard errors, and generally results in smaller standard errors than those estimated by 2SRI. In addition, esSurv explicitly estimates the correlation of unobservable factors contributing to both treatment assignment and the outcome of interest, providing an interpretive advantage over the residual parameter estimate in the 2SRI method. Comparisons with commonly used propensity score methods and with a model that does not account for non-random treatment assignment show clear bias in these methods that is not mitigated by increased sample size. We illustrate using actual dialysis patient data comparing mortality of patients with mature arteriovenous grafts for venous access to mortality of patients with grafts placed but not yet ready for use at the initiation of dialysis. We find strong evidence of endogeneity (with estimate of correlation in unobserved factors ρ̂ = 0.55), and estimate a mature-graft hazard ratio of 0.197 in our proposed method, with a similar 0.173 hazard ratio using 2SRI. The 0.630 hazard ratio from a frailty model without a correction for the non-random nature of treatment assignment illustrates the importance of accounting for endogeneity. PMID:24845211

  2. Loss of microbial (pathogen) infections associated with recent invasions of the red imported fire ant Solenopsis invicta

    USDA-ARS?s Scientific Manuscript database

    Loss of natural enemies during colonization is a prominent hypothesis explaining enhanced performance of invasive species in introduced areas. Numerous studies have tested this enemy release hypothesis in a wide range of taxa but few studies have focused on invasive ants. We conducted extensive surv...

  3. THE ABRF-MARG MICROARRAY SURVEY 2004: TAKING THE PULSE OF THE MICROARRAY FIELD

    EPA Science Inventory

    Over the past several years, the field of microarrays has grown and evolved drastically. In its continued efforts to track this evolution, the ABRF-MARG has once again conducted a survey of international microarray facilities and individual microarray users. The goal of the surve...

  4. Wheat landraces: A mini review

    USDA-ARS?s Scientific Manuscript database

    Farmers developed and utilized diverse wheat landraces to meet the complexity of a multitude of spatio-temporal, agro-ecological systems and to provide reliable sustenance and a sustainable food source to local communities. The genetic structure of wheat landraces is an evolutionary approach to surv...

  5. National Aquatic Resource Surveys: Multiple objectives and constraints lead to design complexity

    EPA Science Inventory

    The US Environmental Protection Agency began conducting the National Aquatic resource Surveys (NARS) in 2007 with a national survey of lakes (NLA 2007) followed by rivers and streams in 2008-9 (NRSA 2008), coastal waters in 2010 (NCCA 2010) and wetlands in 2011 (NWCA). The surve...

  6. Resistance of Benghal Dayflower (Commelina benghalensis) Seeds to Harsh Environments and the Implications for Dispersal by Mourning Doves (Zenaida macroura) in Georgia, U.S.A.

    USDA-ARS?s Scientific Manuscript database

    The potential dispersal of Benghal dayflower seeds by mourning doves was studied in southern Georgia, U.S.A. The gut contents (both crop and gizzard) of mourning doves harvested in the autumn months were investigated to determine if mourning doves fed on Benghal dayflower and whether seeds can surv...

  7. Association of Verde plant bug, Creontiades signatus (Hemiptera: Miridae), with cotton boll rot

    USDA-ARS?s Scientific Manuscript database

    Cotton along the Gulf Coast of south Texas has experienced loss from cotton boll rot especially during the last 10 to 15 years, and stink bugs and plant bugs (Hemiptera: Pentatomidae and Miridae) that feed on cotton bolls have been suspected in introducing the disease. A replicated grower field surv...

  8. Verde plant bug associatioin with boll damage including cotton boll rot and potential in-season indicators of damage

    USDA-ARS?s Scientific Manuscript database

    Cotton along the Gulf Coast of south Texas has experienced loss from cotton boll rot especially during the last 10 to 15 years, and stink bugs and plant bugs (Hemiptera: Pentatomidae and Miridae) that feed on cotton bolls have been suspected in introducing the disease. A replicated grower field surv...

  9. Expatriate Parents and Supplementary Education in Japan: Survival Strategy or Acculturation Strategy

    ERIC Educational Resources Information Center

    Cook, Melodie

    2013-01-01

    The increase in the use of supplementary education, or "juku," in Japan by Japanese families in order to augment their children's chances of success in entering prestigious pre-tertiary and tertiary institutions is documented (Blumenthal in "Asian Surv" 32(5):448-460, 1992; Bray and Lykins in "Shadow education; private…

  10. Resistor Susceptibility Survey

    DTIC Science & Technology

    1976-11-01

    SATIN IV ATTN: DCKE, L. Staples ATTN. YWES ATTN XRE-Surv. ATTN- MCAE, Lt Col Sparks ATTN: XRP , Maj Gingrich Sandia Lab. ATTN 3141 ATTN E...Diamond Lab. ATTN: Lib. HQ USAF ATTN: XOOWD AFSC Tech. Lib. ATTN: DLCAW ATTN: XRP ! Sperry Rand Fit. Sys. Div. ATTN: Tech. Lib. ATTN: D

  11. Classifying Exercise Activities According to Motivation, Self-Objectification, and Disordered Eating: How Can We Target Change?

    ERIC Educational Resources Information Center

    Grupski, Allison

    2009-01-01

    SurvObjectification theorists suggest that one way for women to combat self-objectification is through participation in sport and exercise activities that encourage body competence. This two-part study investigates the impact of (a) motivation for physical activity and (b) type of physical activity on the outcomes of self-objectification, body…

  12. Theater Battle Management Core System Systems Engineering Case Study

    DTIC Science & Technology

    2005-02-17

    TOC Army Unit TOCs USMC TACC DASC Data Link Data Link AWACS J-STARS Data Link Data Link Data Link RIVET JOINT COMPASS CALL Theater RECCE/SURV Data...Developer’s Guide ( SDG ), Version 2, 30 August 2001. 11. Air Force Electronic Systems Center, ESC/ACF Program Office, ICWG Charter, November 2003. 12

  13. Locally Learning Biomedical Data Using Diffusion Frames

    DTIC Science & Technology

    2012-01-01

    age - related macular degeneration (AMD) patients. All eye- related data were collected by our collaborators at the...in Table 2. 6.2. Age - related macular degeneration Age - related macular degeneration is the most common cause of blindness among the elderly population...maculopathy and age - related macular degeneration . The international ARM epidemiological study group. Surv. Ophthalmol. 39, 367–374.

  14. Genetic analysis of calf health in Charolais beef cattle.

    PubMed

    Vinet, A; Leclerc, H; Marquis, F; Phocas, F

    2018-04-14

    The objective of this study was to investigate the factors that influence calf health and survival in Charolais cattle. Data from 2,740 calves, originating from 16 French farms and observed from birth until 30 d of age, were analyzed using models that took account of direct genetic, maternal genetic, and common environmental effects. Both direct and maternal genetic parameters were estimated for birth weight (BW), calving ease (CE), neonatal vitality (NV), survival at 30 d (Surv), and umbilical infection and diarrhea at different ages (0 to 5 d: Umb1 and Diar1; 6 to 20 d: Umb2 and Diar2; and 21 to 30 d: Umb3 and Diar3). The heritability values for direct and maternal genetic effects were, 0.026 (SE = 0.027) and 0.096 (SE = 0.042) for Surv, 0.280 (SE = 0.063) and 0.063 (SE = 0.038) for BW, 0.129 (SE = 0.041) and 0 for CE, 0.073 (SE = 0.035) and 0 for NV, 0.071 (SE = 0.038) and 0.017 (SE = 0.026) for Umb1, 0 and 0.082 (SE = 0.029) for Umb2, 0 and 0.044 (SE = 0.030) for Diar1, 0.016 (SE = 0.022) and 0.012 (SE = 0.026) for Diar2, and 0.016 (SE = 0.028) and 0 for Diar3, respectively. Significant genetic variability in beef cattle was thus revealed for five calf health traits: NV, Surv, Diar1, Umb1, and Umb2. In addition, for three traits (Surv, Diar1, and Umb2), maternal genetic effects clearly contributed more to health performance than direct genetic effects. Estimates of genetic correlation between traits varied markedly (from 0 to 1 in absolute values) depending on the traits in question, the age for a given trait, and the type (direct or maternal) of the genetic effects considered. These results suggest that not all health traits in Charolais cattle can be improved simultaneously, and breeders will therefore have to prioritize certain traits of interest in their breeding objectives. Overall, our results demonstrate the potential utility of collecting and integrating data on calf diseases, NV and survival in future beef cattle breeding programs. To ensure

  15. Translation, cross-cultural adaptation and validation of the Diabetes Empowerment Scale - Short Form.

    PubMed

    Chaves, Fernanda Figueredo; Reis, Ilka Afonso; Pagano, Adriana Silvina; Torres, Heloísa de Carvalho

    2017-03-23

    To translate, cross-culturally adapt and validate the Diabetes Empowerment Scale - Short Form for assessment of psychosocial self-efficacy in diabetes care within the Brazilian cultural context. Assessment of the instrument's conceptual equivalence, as well as its translation and cross-cultural adaptation were performed following international standards. The Expert Committee's assessment of the translated version was conducted through a web questionnaire developed and applied via the web tool e-Surv. The cross-culturally adapted version was used for the pre-test, which was carried out via phone call in a group of eleven health care service users diagnosed with type 2 diabetes mellitus. The pre-test results were examined by a group of experts, composed by health care consultants, applied linguists and statisticians, aiming at an adequate version of the instrument, which was subsequently used for test and retest in a sample of 100 users diagnosed with type 2 diabetes mellitus via phone call, their answers being recorded by the web tool e-Surv. Internal consistency and reproducibility of analysis were carried out within the statistical programming environment R. Face and content validity were attained and the Brazilian Portuguese version, entitled Escala de Autoeficácia em Diabetes - Versão Curta, was established. The scale had acceptable internal consistency with Cronbach's alpha of 0.634 (95%CI 0.494- 0.737), while the correlation of the total score in the two periods was considered moderate (0.47). The intraclass correlation coefficient was 0.50. The translated and cross-culturally adapted version of the instrument to spoken Brazilian Portuguese was considered valid and reliable to be used for assessment within the Brazilian population diagnosed with type 2 diabetes mellitus. The use of a web tool (e-Surv) for recording the Expert Committee responses as well as the responses in the validation tests proved to be a reliable, safe and innovative method. Traduzir

  16. Extending information retrieval methods to personalized genomic-based studies of disease.

    PubMed

    Ye, Shuyun; Dawson, John A; Kendziorski, Christina

    2014-01-01

    Genomic-based studies of disease now involve diverse types of data collected on large groups of patients. A major challenge facing statistical scientists is how best to combine the data, extract important features, and comprehensively characterize the ways in which they affect an individual's disease course and likelihood of response to treatment. We have developed a survival-supervised latent Dirichlet allocation (survLDA) modeling framework to address these challenges. Latent Dirichlet allocation (LDA) models have proven extremely effective at identifying themes common across large collections of text, but applications to genomics have been limited. Our framework extends LDA to the genome by considering each patient as a "document" with "text" detailing his/her clinical events and genomic state. We then further extend the framework to allow for supervision by a time-to-event response. The model enables the efficient identification of collections of clinical and genomic features that co-occur within patient subgroups, and then characterizes each patient by those features. An application of survLDA to The Cancer Genome Atlas ovarian project identifies informative patient subgroups showing differential response to treatment, and validation in an independent cohort demonstrates the potential for patient-specific inference.

  17. Tidal Data Collection Options Study.

    DTIC Science & Technology

    1985-11-01

    area in which it was collected and. actualls. onlN tide measurements, the number would be even higher . ..- - - - - - - - - - - - - Table 1. Survey...sonobuoy. and consumer entertainment small number of easily interconnected semiconductor in- markets (typically 10,000 or more units per buy). tegrated...1985. validation of the computer model used to provide 7. Market Surve’ -Automatic Tide Monitoring. un- * detailed tide calculations. The design study

  18. HIV-Prevalence in Tuberculosis Patients in Germany, 2002–2009: An Estimation Based on HIV and Tuberculosis Surveillance Data

    PubMed Central

    Fiebig, Lena; Kollan, Christian; Hauer, Barbara; Gunsenheimer-Bartmeyer, Barbara; an der Heiden, Matthias; Hamouda, Osamah; Haas, Walter

    2012-01-01

    Tuberculosis (TB) and HIV comorbidity is a major challenge in TB prevention and control but difficult to assess in Germany as in other countries, where data confidentiality precludes notifying the HIV status of TB patients. We aimed to estimate the HIV-prevalence in TB patients in Germany, 2002–2009, and to characterize the HIV/TB patients demographically. Data from the long-term observational open multicentre cohort ClinSurv HIV were used to identify incident TB in HIV-positive individuals. We assessed the cohort’s coverage for the nationwide HIV-positive population by contrasting ClinSurv HIV patients under antiretroviral therapy (ART) with national HIV patient numbers derived from ART prescriptions (data by Insight Health; available for 2006–2009). The HIV-prevalence in TB patients was calculated as the number of HIV/TB cases projected for Germany over all culture-positive TB notifications. From 2002 to 2009, 298 of 15,531 HIV-positive patients enrolled in the ClinSurv HIV cohort were diagnosed with TB. A 21% cohort coverage was determined. The annual estimates of the HIV-prevalence in TB patients were on average 4.5% and ranged from 3.5% (95%CI 2.3–5.1%) in 2007 to 6.6% (95%CI 5.0–8.5%) in 2005. The most recent estimate for 2009 was 4.0% (95%CI 2.6–5.9%). The 298 HIV/TB patients were characterized by a male-to-female ratio of 2.1, by a median age of 38 years at TB diagnosis, and by 59% of the patients having a foreign origin, mainly from Subsahara Africa. We provide, to our knowledge, the first estimate of the HIV-prevalence in TB patients for Germany by joint evaluation of anonymous HIV and TB surveillance data sources. The identified level of HIV in TB patients approximates available surveillance data from neighbouring countries and indicates a non-negligible HIV/TB burden in Germany. Our estimation approach is valuable for epidemiological monitoring of HIV/TB within the current legal frameworks. PMID:23145087

  19. Translation, cross-cultural adaptation and validation of the Diabetes Empowerment Scale – Short Form

    PubMed Central

    Chaves, Fernanda Figueredo; Reis, Ilka Afonso; Pagano, Adriana Silvina; Torres, Heloísa de Carvalho

    2017-01-01

    ABSTRACT OBJECTIVE To translate, cross-culturally adapt and validate the Diabetes Empowerment Scale – Short Form for assessment of psychosocial self-efficacy in diabetes care within the Brazilian cultural context. METHODS Assessment of the instrument’s conceptual equivalence, as well as its translation and cross-cultural adaptation were performed following international standards. The Expert Committee’s assessment of the translated version was conducted through a web questionnaire developed and applied via the web tool e-Surv. The cross-culturally adapted version was used for the pre-test, which was carried out via phone call in a group of eleven health care service users diagnosed with type 2 diabetes mellitus. The pre-test results were examined by a group of experts, composed by health care consultants, applied linguists and statisticians, aiming at an adequate version of the instrument, which was subsequently used for test and retest in a sample of 100 users diagnosed with type 2 diabetes mellitus via phone call, their answers being recorded by the web tool e-Surv. Internal consistency and reproducibility of analysis were carried out within the statistical programming environment R. RESULTS Face and content validity were attained and the Brazilian Portuguese version, entitled Escala de Autoeficácia em Diabetes – Versão Curta, was established. The scale had acceptable internal consistency with Cronbach’s alpha of 0.634 (95%CI 0.494– 0.737), while the correlation of the total score in the two periods was considered moderate (0.47). The intraclass correlation coefficient was 0.50. CONCLUSIONS The translated and cross-culturally adapted version of the instrument to spoken Brazilian Portuguese was considered valid and reliable to be used for assessment within the Brazilian population diagnosed with type 2 diabetes mellitus. The use of a web tool (e-Surv) for recording the Expert Committee responses as well as the responses in the validation tests proved

  20. Using relative survival measures for cross-sectional and longitudinal benchmarks of countries, states, and districts: the BenchRelSurv- and BenchRelSurvPlot-macros

    PubMed Central

    2013-01-01

    Background The objective of screening programs is to discover life threatening diseases in as many patients as early as possible and to increase the chance of survival. To be able to compare aspects of health care quality, methods are needed for benchmarking that allow comparisons on various health care levels (regional, national, and international). Objectives Applications and extensions of algorithms can be used to link the information on disease phases with relative survival rates and to consolidate them in composite measures. The application of the developed SAS-macros will give results for benchmarking of health care quality. Data examples for breast cancer care are given. Methods A reference scale (expected, E) must be defined at a time point at which all benchmark objects (observed, O) are measured. All indices are defined as O/E, whereby the extended standardized screening-index (eSSI), the standardized case-mix-index (SCI), the work-up-index (SWI), and the treatment-index (STI) address different health care aspects. The composite measures called overall-performance evaluation (OPE) and relative overall performance indices (ROPI) link the individual indices differently for cross-sectional or longitudinal analyses. Results Algorithms allow a time point and a time interval associated comparison of the benchmark objects in the indices eSSI, SCI, SWI, STI, OPE, and ROPI. Comparisons between countries, states and districts are possible. Exemplarily comparisons between two countries are made. The success of early detection and screening programs as well as clinical health care quality for breast cancer can be demonstrated while the population’s background mortality is concerned. Conclusions If external quality assurance programs and benchmark objects are based on population-based and corresponding demographic data, information of disease phase and relative survival rates can be combined to indices which offer approaches for comparative analyses between benchmark objects. Conclusions on screening programs and health care quality are possible. The macros can be transferred to other diseases if a disease-specific phase scale of prognostic value (e.g. stage) exists. PMID:23316692

  1. The Previously Undetected Presence of Culex restuans (Diptera: Culicidae) in Central America, with Notes on Identification

    DTIC Science & Technology

    1988-01-01

    geografica actualizada. Rev. Inv. Salud Publica (Mexico) 33: 11 I - 125. Heinemann, S.J. and J.N. Belkin. 1977. Collection records of the project...Mosquitoes of Middle America” 8. Central America: Belize (BH), Guatemala (GUA), El Salvador ( SAL ), Honduras (HON), Nicaragua (NI, NIC). Mosq. Syst...Culicidae). Ill. Nat. Hist. Surv. Biol. Notes 52, 50 pp. Vargas, L. 1956. Especies y distribucidn de mosquitos mexicanos no anofelinos. Rev. Instit. de

  2. Standard Engineering Installation Package for Dual Frequency Signaling Unit (DFSU).

    DTIC Science & Technology

    1982-03-15

    Center, Cameron Station, Alexandria, VA 22314. Government activities may requisition copies oy writing to the Commander, Headquarters, Fort Huachuca, ATTN...Protective ac ground ins-alled: Yes No (1) All equipment crcunded to ac prozective g-ourd by separate wires: Y-s No Pigure 2-1. Sample Sita Surve) Ci- eck !st...20305 12 - Defense Documentation Center, Cameron Station, Alexandria, VA 22134 4 - 1st Signal Brigade USACC-Korea, APO San Francisco 96218 2 - USACC

  3. AmWeb: a novel interactive web tool for antimicrobial resistance surveillance, applicable to both community and hospital patients.

    PubMed

    Ironmonger, Dean; Edeghere, Obaghe; Gossain, Savita; Bains, Amardeep; Hawkey, Peter M

    2013-10-01

    Antimicrobial resistance (AMR) is recognized as one of the most significant threats to human health. Local and regional AMR surveillance enables the monitoring of temporal changes in susceptibility to antibiotics and can provide prescribing guidance to healthcare providers to improve patient management and help slow the spread of antibiotic resistance in the community. There is currently a paucity of routine community-level AMR surveillance information. The HPA in England sponsored the development of an AMR surveillance system (AmSurv) to collate local laboratory reports. In the West Midlands region of England, routine reporting of AMR data has been established via the AmSurv system from all diagnostic microbiology laboratories. The HPA Regional Epidemiology Unit developed a web-enabled database application (AmWeb) to provide microbiologists, pharmacists and other stakeholders with timely access to AMR data using user-configurable reporting tools. AmWeb was launched in the West Midlands in January 2012 and is used by microbiologists and pharmacists to monitor resistance profiles, perform local benchmarking and compile data for infection control reports. AmWeb is now being rolled out to all English regions. It is expected that AmWeb will become a valuable tool for monitoring the threat from newly emerging or currently circulating resistant organisms and helping antibiotic prescribers to select the best treatment options for their patients.

  4. Manual of Documentation Practices Applicable to Defence-Aerospace Scientific and Technical Information. Volume 2. Section 4 - Data Recording and Storage. Section 5 - Mechanization Systems and Operations. Section 6 - Announcement Services and Publications

    DTIC Science & Technology

    1979-07-01

    processes rely upon the coincidence of holes drilled , with considerable precision, in special cards. The computer can handle this kind of basic...PERFORMANCE 70No.12,17/2 Gray.R.A. Cabaniss,0.H. 4i.1972 63PP 57ref Indexing Terms: * Metrology /*Standards/Physics/Physicr Availability: TRC L1.20 A1-SURV...within the parent organsation is gauged to fit within this requitement. The imiphiations of this aspvct of SI processing are dealt with in detail in

  5. A Unified Framework for Simulating Markovian Models of Highly Dependable Systems

    DTIC Science & Technology

    1989-07-01

    ependability I’valuiation of Complex lault- lolerant Computing Systems. Ptreedings of the 1-.et-enth Sv~npmiun on Falult- lolerant Comnputing. Portland, Maine...New York. [12] (icis;t, R.M. and ’I’rivedi, K.S. (1983). I!Itra-Il gh Reliability Prediction for Fault-’ lolerant Computer Systems. IEE.-E Trw.%,.cions... 1998 ). Surv’ey of Software Tools for [valuating Reli- ability. A vailability, and Serviceabilitv. ACA1 Computing S urveyjs 20. 4, 227-269). [32] Meyer

  6. Stratigraphical evidence of late Amazonian periglaciation and glaciation in the Astapus Colles region of Mars

    NASA Astrophysics Data System (ADS)

    Soare, Richard J.; Osinski, Gordon R.

    2009-07-01

    Recent modeling of the meteorological conditions during and following times of high obliquity suggests that an icy mantle could have been emplaced in western Utopia Planitia by atmospheric deposition during the late Amazonian period [Costard, F.M., Forget, F., Madeleine, J.B., Soare, R.J., Kargel, J.S., 2008. Lunar Planet. Sci. 39. Abstract 1274; Madeleine, B., Forget, F., Head, J.W., Levrard, B., Montmessin, F., 2007. Lunar Planet. Sci. 38. Abstract 1778]. Astapus Colles (ABa) is a late Amazonian geological unit - located in this hypothesized area of accumulation - that comprises an icy mantle tens of meters thick [Tanaka, K.L., Skinner, J.A., Hare, T.M., 2005. US Geol. Surv. Sci. Invest., Map 2888]. For the most part, this unit drapes the early Amazonian Vastitas Borealis interior unit (ABvi); to a lesser degree it overlies the early Amazonian Vastitas Borealis marginal unit (ABvm) and the early to late Hesperian UP plains unit HBu2 [Tanaka, K.L., Skinner, J.A., Hare, T.M., 2005. US Geol. Surv. Sci. Invest., Map 2888]. Landscapes possibly modified by late-Amazonian periglacial processes [Costard, F.M., Kargel, J.S., 1995. Icarus 114, 93-112; McBride, S.A., Allen, C.C., Bell, M.S., 2005. Lunar Planet. Sci. 36. Abstract 1090; Morgenstern, A., Hauber, E., Reiss, D., van Gasselt, S., Grosse, G., Schirrmeister, L., 2007. J. Geophys. Res. 112, doi:10.1029/2006JE002869. E06010; Seibert, N.M., Kargel, J.S., 2001. Geophys. Res. Lett. 28, 899-902; Soare, R.J., Kargel, J.S., Osinski, G.R., Costard, F., 2007. Icarus 191, 95-112; Soare, R.J., Osinski, G.R., Roehm, C.L., 2008. Earth Planet. Sci. Lett. 272, 382-393] and glacial processes [Milliken, R.E., Mustard, J.F., Goldsby, D.L., 2003. J. Geophys. Res. 108 (E6), doi:10.1029/2002JE002005. 5057; Mustard, J.F., Cooper, C.D., Rifkin, M.K., 2001. Nature 412, 411-414; Tanaka, K.L., Skinner, J.A., Hare, T.M., 2005. US Geol. Surv. Sci. Invest., Map 2888] have been reported within the region. Researchers have assumed that the

  7. Basic research supported developments of chemotherapy in nonresectable isolated colorectal liver metastases to a protocol of hepatic artery infusion using mitoxantrone, 5-FU + folinic acid and mitomycin C.

    PubMed

    Link, K H; Kornmann, M; Leder, G; Pillasch, A F; Sunelaitis, E; Schatz, M; Pressmar, J; Beger, H G

    1999-02-01

    Since the developments in systemic chemotherapy of metastasized colorectal cancer have not resulted in substantial gains in survival times, we wished to improve the course of isolated nonresectable colorectal liver metastases (CPLM) by hepatic arterial infusion treatment. Patients (pts) with CRLM have a worse fate than those pts whose liver metastases could be resected. Systemic (i.v.) chemotherapy for CRLM/colorectal metastases does not improve survival to a relevant level (median survival time (med. surv.) after 5-Fluorouracil + Folinic Acid (5-FU + FA) i.v.: 6.4-14.3 months (m)). Hepatic artery infusion (HAI) with 5-Fluorode-oxyuridine (5-FUDR) has been demonstrated in a metaanalysis of randomized trials to be superior to i.v. treatment/palliative care (med. surv.: 15 vs. 10 m). The benefit of HAI with 5-FUDR, although recommended as treatment for CRLM, is severely compromised by the 5-FUDR induced hepatotoxicity, leading eventually to sclerosing cholangitis (SC)/liver scirrhosis. We have stepwise developed a protocol for HAI of CRLM, which is superior to HAI with 5-FUDR, and, most evidently, to systemic chemotherapy. Between 1982-1997, 222 CR (L) M patients were treated within subsequent protocols (Table). In protocol A, 68 CRLM pts received HAI with 5-FUDR (A1: nonrandomized pts; A2: randomized pts). In protocol B (randomized pts.), 46 pts received 5-FUDR i.a. (via HAI) + i.v. In protocol C, systemic chemotherapy with 5-FU + FA was conducted in 34 pts with metastasized colorectal cancers, including CRLM. In protocol D 5-FU + FA was delivered via HAI in 25 pts with CRLM. In protocol E, based on in vitro phase II studies and the results of protocol D, Mitoxantrone and Mitomycin C were added to 5-FU + FA (MFFM). Fifty (50) CRLM pts received HAI with MFFM. The response rates, med. surv. times, systemic toxicity and SC rates are shown in the table. HAI with MFFM produced objective responses in 66%, the med. surv. was 27.4 m, and no SC occurred. The ports surgically

  8. An Investigation of the Five Point Restraint System for Aviators

    DTIC Science & Technology

    1980-10-01

    Crotch strap loo - .Lneb mdc? plate 11. puate noste on belt 07" Al -2" go ditreace in feel the promest Crotch strop Is posit io ls" AV 11* |lodiag a...upper pelvic bone and scapula bones could be used as the aft protuberances. But when the individuals were seated in the AAH seat, portion, of the...inajor trapeziuH muscle on either side of the backbone pro- ruded farther ali than the scapula bones. The back cushion molded the r Aircraft crash surv

  9. Long-term Phase 1/2 intraspinal stem cell transplantation outcomes in ALS.

    PubMed

    Goutman, Stephen A; Brown, Morton B; Glass, Jonathan D; Boulis, Nicholas M; Johe, Karl; Hazel, Tom; Cudkowicz, Merit; Atassi, Nazem; Borges, Lawrence; Patil, Parag G; Sakowski, Stacey A; Feldman, Eva L

    2018-06-01

    Intraspinal human spinal cord-derived neural stem cell (HSSC) transplantation is a potential therapy for amyotrophic lateral sclerosis (ALS); however, previous trials lack controls. This post hoc analysis compared ambulatory limb-onset ALS participants in Phase 1 and 2 (Ph1/2) open-label intraspinal HSSC transplantation studies up to 3 years after transplant to matched participants in Pooled Resource Open-Access ALS Clinical Trials (PRO-ACT) and ceftriaxone datasets to provide required analyses to inform future clinical trial designs. Survival, ALSFRS-R, and a composite statistic (ALS/SURV) combining survival and ALS Functional Rating Scale revised (ALSFRS-R) functional status were assessed for matched participant subsets: PRO-ACT n  = 1108, Ph1/2 n  = 21 and ceftriaxone n  = 177, Ph1/2 n  = 20. Survival did not differ significantly between cohorts: Ph1/2 median survival 4.7 years, 95% CI (1.2, ∞) versus PRO-ACT 2.3 years (1.9, 2.5), P  = 1.0; Ph1/2 3.0 years (1.2, 5.6) versus ceftriaxone 2.3 years (1.8, 2.8), P  = 0.88. Mean ALSFRS-R at 24 months significantly differed between Ph1/2 and both comparison cohorts (Ph1/2 30.1 ± 8.6 vs. PRO-ACT 24.0 ± 10.2, P  = 0.048; Ph1/2 30.7 ± 8.8 vs. ceftriaxone 19.2 ± 9.5, P  = 0.0023). Using ALS/SURV, median PRO-ACT and ceftriaxone participants died by 24 months, whereas median Ph1/2 participant ALSFRS-Rs were 23 ( P  = 0.0038) and 19 ( P  = 0.14) in PRO-ACT and ceftriaxone comparisons at 24 months, respectively, supporting improved functional outcomes in the Ph1/2 study. Comparison of Ph1/2 studies to historical datasets revealed significantly improved survival and function using ALS/SURV versus PRO-ACT controls. While results are encouraging, comparison against historical populations demonstrate limitations in noncontrolled studies. These findings support continued evaluation of HSSC transplantation in ALS, support the benefit of control populations, and enable necessary power

  10. Assessing the invariance of a culturally competent multi-lingual unmet needs survey for immigrant and Australian-born cancer patients: a Rasch analysis.

    PubMed

    McGrane, J A; Butow, P N; Sze, M; Eisenbruch, M; Goldstein, D; King, M T

    2014-12-01

    The purpose of this study was to assess the invariance of a culturally competent multi-lingual unmet needs survey. A cross-sectional study was conducted among immigrants of Arabic-, Chinese- and Greek-speaking backgrounds, and Anglo-Australian-born controls, recruited through Cancer Registries (n = 591) and oncology clinics (n = 900). The survey included four subscales, with newly developed items addressing unmet need in culturally competent health information and patient support (CCHIPS), and items adapted from existing questionnaires addressing physical and daily living (PDL), sexuality (SEX) and survivorship (SURV) unmet need. The survey was translated into Arabic, Chinese and Greek. Rasch analysis was carried out on the four domains. Whilst many items were mistargeted to less prevalent areas of unmet need, causing substantial floor effects in person estimates, reliability indices were acceptable. The CCHIPS domain showed differential item functioning (DIF) for cultural background and language, and the PDL domain showed DIF for treatment phase and gender. The results for SEX and SURV domains were limited by floor effects and missing responses. All domains showed adequate fit to the model after DIF was resolved and a small number of items were deleted. The study highlights the intricacies in designing a culturally competent survey that can be applied to culturally and linguistically diverse groups across different treatment contexts. Overall, the results demonstrate that this survey is somewhat invariant with respect to these factors. Future refinements are suggested to enhance the survey's cultural competence and general validity.

  11. Design definition study of a lift/cruise fan technology V/STOL aircraft. Volume 1: Navy operational aircraft

    NASA Technical Reports Server (NTRS)

    1975-01-01

    Aircraft were designed and sized to meet Navy mission requirements. Five missions were established for evaluation: anti-submarine warfare (ASW), surface attack (SA), combat search and rescue (CSAR), surveillance (SURV), and vertical on-board delivery (VOD). All missions were performed with a short takeoff and a vertical landing. The aircraft were defined using existing J97-GE gas generators or reasonable growth derivatives in conjunction with turbotip fans reflecting LF460 type technology. The multipurpose aircraft configuration established for U.S. Navy missions utilizes the turbotip driven lift/cruise fan concept for V/STOL aircraft.

  12. Interim-Night Integrated Goggle Head Tracking System (I-Nights). Volume 1. Ground Test Summary

    DTIC Science & Technology

    1992-08-01

    A/WDP _ DATE: I COORDINATION: NWC 04_______ DATE: 7914401 COORDINATION: USD/ YAGO DATE:9 4/ APPROVED BY: ESD/YAff-1DST j T [!1! / 624 TABLE OF CONTENTS...B/U YAGO ) Voltmeter 1 NWC Voltage Standard 1 NWC (CAL Lab) Soldering Iron 1 NWC O-Scope 1 NWC LPU-9D Life Preserver/ Surv. Vest 1 YAGO G-Suit (Large...1 YAGO Large Flight Boots 1 YAGO Ex-Large Flight Suit 1 YAGO ADAM #12 (Large) I Holloman ADAM I-NIGHTS Liners 3 (1 per vendor) AAMRL/BBM 5% Hybrid

  13. Installation Restoration Program. Phase 2. Confirmation/Quantification. Stage 2. Elmendorf Air Force Base, Alaska.

    DTIC Science & Technology

    1988-03-01

    50 BLM - - - in use Oil Well Road 51 63-501 - - - in use 6981st Rec Area Six Mile Lake 52 23-100 166. A 36 in use Golf Course Pro Shop 53 62-145 125...q K, -- p *K. % K.. K.,., ~* K,. .~ A , A .U .AAA.J A A J~...K A. ..A ,.A - . OKIRACoks con 55 ORDER FOR SUPPL) ES OR SERVICES 1 .2 2. PROC...SYC/AGENCY tt.SURV 20. TOTAL AMOUNT~CeNT USE CRIT A. PST a CONRACTADMIN A. ASTU CNTRCT C. ARSTNAC? RECIP 0. SPL CON ? FuEC PAT It KNDN 421 TYPE ASP

  14. Phosphorus zoning in olivine of Kilauea Iki lava lake, Hawaii

    NASA Astrophysics Data System (ADS)

    Fabbrizio, Alessandro; Beckett, John R.; Baker, Michael B.; Stolper, Edward M.

    2010-05-01

    low P chambers and P enriched zones were also observed; near the margins of the crystals is possible to find the presence of discontinuous sets of P-enriched bands that generally outline euhedral crystal forms; some crystals are characterized by P-enriched ghosts of relict crystals in their interior that are associated with probable undercooling and/or with an initial pulse of rapid crystal growth [8, 10]. Phenocrysts and microphenocrysts are frequently unzoned in major and minor divalent cations (Fe, Mg, Mn, Ca, Ni), but all are zoned in P. Variations in Cr and Al correlate spatially with P but are much fainter or absents, in some crystal the P-enriched bands are superimposed with small crystals of chromite (≤1 μm) aligned along the P zoning. Probably these chromites were formed by precipitation from the original Cr and Al bands. In no case was observed Ti zoning. [1] Richter D.H. et al. (1970) US Geol Surv Prof Pap 537-E, 73 p. [2] Richter D.H., Moore J.G. (1966) US Geol Surv Prof Pap 537-B, 26 p. [3] Helz R.T. (1980) Bull Volcanol 43-4, 675-701. [4] Helz R.T. et al. (1984) US Geol Surv Open File Rep 84-484, 72 p. [5] Hardee H.C. et al. (1981) Geophys Res Lett 8, 1211-1214. [6] Helz R.T., Wright T.L. (1983) US Geol Surv Open File Rep 83-326, 66 p. [7] Helz R.T. (1987) Geochem Soc Spec Pub 1, 241-258. [8] Beckett J.R. et al. (2008) LPSC abs. 1726. [9] Mccanta M.C. et al. (2008) LPSC abs. 1807. [10] Milmann-Barris M.S. et al. (2008) CMP 155, 739-765. [11] Mccanta M.C. et al. (2008) GCA 72-12, S1, A610.

  15. The effect of hospital care on early survival after penetrating trauma.

    PubMed

    Clark, David E; Doolittle, Peter C; Winchell, Robert J; Betensky, Rebecca A

    2014-12-01

    The effectiveness of emergency medical interventions can be best evaluated using time-to-event statistical methods with time-varying covariates (TVC), but this approach is complicated by uncertainty about the actual times of death. We therefore sought to evaluate the effect of hospital intervention on mortality after penetrating trauma using a method that allowed for interval censoring of the precise times of death. Data on persons with penetrating trauma due to interpersonal assault were combined from the 2008 to 2010 National Trauma Data Bank (NTDB) and the 2004 to 2010 National Violent Death Reporting System (NVDRS). Cox and Weibull proportional hazards models for survival time (t SURV ) were estimated, with TVC assumed to have constant effects for specified time intervals following hospital arrival. The Weibull model was repeated with t SURV interval-censored to reflect uncertainty about the precise times of death, using an imputation method to accommodate interval censoring along with TVC. All models showed that mortality was increased by older age, female sex, firearm mechanism, and injuries involving the head/neck or trunk. Uncensored models showed a paradoxical increase in mortality associated with the first hour in a hospital. The interval-censored model showed that mortality was markedly reduced after admission to a hospital, with a hazard ratio (HR) of 0.68 (95% CI 0.63, 0.73) during the first 30 min declining to a HR of 0.01 after 120 min. Admission to a verified level I trauma center (compared to other hospitals in the NTDB) was associated with a further reduction in mortality, with a HR of 0.93 (95% CI 0.82, 0.97). Time-to-event models with TVC and interval censoring can be used to estimate the effect of hospital care on early mortality after penetrating trauma or other acute medical conditions and could potentially be used for interhospital comparisons.

  16. Impaired CD4-cell immune reconstitution upon HIV therapy in patients with toxoplasmic encephalitis compared to patients with pneumocystis pneumonia as AIDS indicating disease

    PubMed Central

    2009-01-01

    Objectives There is only little data on immune reconstitution in antiretroviral naïve AIDS-patients with toxoplasmosis. The observation of several cases with reduced increase of CD4-cells upon start of antiretroviral treatment (ART) prompted us to investigate the topic using the ClinSurv cohort. Methods 17 German HIV treatment centers contribute to ClinSurv, a multicentre observational cohort under the auspices of the Robert Koch Institute. We retrospectively selected all antiretroviral-naïve patients with toxoplasmic encephalitis (TE) and -as comparator group -with pneumocystosis (PCP) between January 1999 and December 2005. Results A total of 257 patients were included in the analysis, 61 with TE and 196 with PCP. Demographic baseline data showed differences with regard to gender, transmission group, and baseline CD4+ counts (60.9 vs. 44.7/μl, p = 0.022). After ART-initiation the increase in CD4+ lymphocytes was lower in the TE-versus the PCP-group in the first, second and fourth three-month-period (74.4 vs. 120.3/μl, p = 0.006; 96.6 vs. 136.2/μl, p = 0.021; 156.5 vs. 211.5/μl, p = 0.013). Viral load (VL) was higher in the PCP-group at baseline (4.46 log10cop/ml vs. 5.00 log10cop/ml, p = 0.008), while virological success of ART was equal. Conclusions Our data show for the first time that the average CD4+ T-cell increase of patients with toxoplasmosis is impaired compared to PCP-patients. Most clinicians would not be prepared to discontinue follow-up TE-therapy unless CD4+ counts of 200/μl are reached. Explanation for our finding might be the myelosuppressive side effect of pyrimethamine, possible interactions of toxoplasmosis therapy with ART, or an unknown direct biological influence of toxoplasmosis on immune restoration. PMID:19541584

  17. Impaired CD4-cell immune reconstitution upon HIV therapy in patients with toxoplasmic encephalitis compared to patients with pneumocystis pneumonia as AIDS indicating disease.

    PubMed

    Kastenbauer, U; Wolf, E; Kollan, C; Hamouda, O; Bogner, J R

    2009-06-18

    There is only little data on immune reconstitution in antiretroviral naive AIDS-patients with toxoplasmosis. The observation of several cases with reduced increase of CD4-cells upon start of antiretroviral treatment (ART) prompted us to investigate the topic using the ClinSurv cohort. 17 German HIV treatment centers contribute to ClinSurv, a multicentre observational cohort under the auspices of the Robert Koch Institute. We retrospectively selected all antiretroviral-naive patients with toxoplasmic encephalitis (TE) and - as comparator group - with pneumocystosis (PCP) between January 1999 and December 2005. A total of 257 patients were included in the analysis, 61 with TE and 196 with PCP. Demographic baseline data showed differences with regard to gender, transmission group, and baseline CD4 superset+ counts (60.9 vs. 44.7/microl, p = 0.022). After ART-initiation the increase in CD4 superset+ lymphocytes was lower in the TE- versus the PCP-group in the first, second and fourth three-month-period (74.4 vs. 120.3/microl, p = 0.006; 96.6 vs. 136.2/microl, p = 0.021; 156.5 vs. 211.5/microl, p = 0.013). Viral load (VL) was higher in the PCP-group at baseline (4.46 log subset10cop/ml vs. 5.00 log subset10cop/ml, p = 0.008), while virological success of ART was equal. Our data show for the first time that the average CD4 superset+ T-cell increase of patients with toxoplasmosis is impaired compared to PCP-patients. Most clinicians would not be prepared to discontinue follow-up TE-therapy unless CD4 superset+ counts of 200/microl are reached. Explanation for our finding might be the myelosuppressive side effect of pyrimethamine, possible interactions of toxoplasmosis therapy with ART, or an unknown direct biological influence of toxoplasmosis on immune restoration.

  18. A semiparametric Bayesian proportional hazards model for interval censored data with frailty effects.

    PubMed

    Henschel, Volkmar; Engel, Jutta; Hölzel, Dieter; Mansmann, Ulrich

    2009-02-10

    Multivariate analysis of interval censored event data based on classical likelihood methods is notoriously cumbersome. Likelihood inference for models which additionally include random effects are not available at all. Developed algorithms bear problems for practical users like: matrix inversion, slow convergence, no assessment of statistical uncertainty. MCMC procedures combined with imputation are used to implement hierarchical models for interval censored data within a Bayesian framework. Two examples from clinical practice demonstrate the handling of clustered interval censored event times as well as multilayer random effects for inter-institutional quality assessment. The software developed is called survBayes and is freely available at CRAN. The proposed software supports the solution of complex analyses in many fields of clinical epidemiology as well as health services research.

  19. Privacy Sensitive Surveillance for Assisted Living - A Smart Camera Approach

    NASA Astrophysics Data System (ADS)

    Fleck, Sven; Straßer, Wolfgang

    An elderly woman wanders about aimlessly in a home for assisted living. Suddenly, she collapses on the floor of a lonesome hallway. Usually it can take over two hours until a night nurse passes this spot on her next inspection round. But in this case she is already on site after two minutes, ready to help. She has received an alert message on her beeper: "Inhabitant fallen in hallway 2b". The source: the SmartSurv distributed network of smart cameras for automated and privacy respecting video analysis.Welcome to the future of smart surveillance Although this scenario is not yet daily practice, it shall make clear how such systems will impact the safety of the elderly without the privacy intrusion of traditional video surveillance systems.

  20. Is the Bangweulu Basin in Zambia the Eroded Remnant of a Large, Multiring Impact Crater?

    NASA Astrophysics Data System (ADS)

    Master, S.

    1993-07-01

    , surrounded by an arcuate high south of the Luongo Fold Belt [7,8]. There are few heat flow measurements in Zambia [9], but there is no indication that the Bangweulu Basin has abnormally high heat flow, which is present in the Luangwaand Upper Zambezi rifts, as evidenced by numerous hot springs and historical geysers [10]. Satellite imagery of Central Africa clearly shows a roughly circular outline of the Bangweulu Basin, including the lakes and swamps, surrounded by a concentric ring of uplifts. The concentric islands in Lake Bangweulu are reminiscent of the multiple concentric rings around impact basins in other planetary bodies, e.g., Valhalla and Asgard structures on the jovian moon of Callisto. Lunar craters Eratosthenes, Aristarchus, and others also have similar terraced morphologies with concentric rings. Based on the above geomorphological and geophysical features, it is postulated that the Bangweulu Basin represents the eroded remnant of a large multiring impact structure that postdates the Katangan Supergroup. Any possible connection between the Bangweulu structure and the Lukanga swamp (a postulated astrobleme in central Zambia [11]) is unknown at this stage. Ground search for macro- and microscopic shock features in the Bangweulu Basin is planned for 1994. References: [1] Debenham F. (1947) Geog. Rev., 37, 351-368. [2] Thieme J. G. and Johnson R. L. (1976) The 1:1,000,000 Scale Geological Map of the Republic of Zambia, Geol. Surv. Zambia. [3] Andersen L. S. and Unrug R. (1984) Precambrian Res., 25, 187-212. [4] Bram K. (1972). Bull. Seis. Soc. Am., 62, 1211-1216. [5] Fairhead J. D. and Henderson N. B. (1977) Tectonophysics, 41, 19-26. [6] Saviaro K. (1979) Bull. Geol. Surv. Botswana, 22, 159-181. [7] Mazac O. (1974) Tech. Rept. Geol. Surv. Zambia, 76, 40 pp. [8] Cowan I. M. and Pollack H. N. (1977) Nature, 266, 615-617. [9] Chapman D. S. and Pollack H. N. (1975) Nature, 256, 28-30. [10] Legg C. A. (1974) Econ. Rept. Geol. Surv. Zambia, 50, 60 pp. [11] Vrana S

  1. Trends in penicillin and macrolide resistance among pneumococci in the UK and the Republic of Ireland in relation to antibiotic sales to pharmacies and dispensing doctors.

    PubMed

    Livermore, David M; Reynolds, Rosy; Stephens, Peter; Duckworth, Georgia; Felmingham, David; Johnson, Alan P; Murchan, Stephen; Murphy, Olive; Gungabissoon, Usha; Waight, Pauline; Pebody, Richard; Shackcloth, Jemma; Warner, Marina; Williams, Laura; George, Robert C

    2006-10-01

    It is widely believed that reducing antimicrobial usage should reduce resistance, although observational evidence is mixed. Pneumococci make ideal subjects to test this belief as they are widely surveyed and lack an animal reservoir. Accordingly, susceptibility data for pneumococci in the UK and Ireland were retrieved from the Health Protection Agency's LabBase/CoSurv system and from the European Antimicrobial Resistance Surveillance System (EARSS) and British Society for Antimicrobial Chemotherapy (BSAC) databases. The BSAC surveillance examines respiratory pneumococci; the other systems focus upon invasive organisms only, with the LabBase/CoSurv system being the most comprehensive, capturing data on most bacteraemias in England and Wales. National pharmacy sales data were obtained from the IMS Health MIDAS database and were modelled to the resistance data by logistic and linear regression analysis. All systems except for the BSAC respiratory surveillance data indicated that penicillin resistance has fallen significantly since 1999 in the UK, whereas macrolide resistance has been essentially stable, or has risen slightly. The data for Ireland were based on smaller sample sizes but suggested a fall in penicillin non-susceptibility from 1999 to 2004, with conflicting evidence for macrolide resistance. The recent decreasing trend in penicillin resistance is in contrast to a rising trend in England and Wales until (at least) 1997 and strongly rising macrolide resistance from 1989 to 1993. UK pharmacy sales of macrolides and oral beta-lactams fell by ca. 30% in the late 1990s following increased concern about resistance, before stabilising or rising weakly; sales in Ireland were stable or rose slightly in the study period. We conclude that falling penicillin resistance in pneumococci followed reduced sales of oral beta-lactams to pharmacies in the UK, but a similar fall in macrolide sales was not associated with any fall in resistance. Stabilisation or decline in

  2. Incidence and prevalence of Toxoplasma gondii infection in women in France, 1980-2020: model-based estimation.

    PubMed

    Nogareda, F; Le Strat, Y; Villena, I; De Valk, H; Goulet, V

    2014-08-01

    Toxoplasmosis is a worldwide zoonosis due to Toxoplasma gondii, a ubiquitous protozoan parasite of warm-blooded animals including humans. In pregnant women, primary infection can cause congenital toxoplasmosis resulting in severe malformations in the newborn. Since 1978, public health authorities in France have implemented a congenital toxoplasmosis prevention programme, including monthly serological screening of all seronegative pregnant women, and treatment in case of seroconversion. However, this programme does not produce systematic surveillance data on incidence and prevalence. Our objective was to estimate the incidence and prevalence of T. gondii infection, and the incidence of seroconversion during pregnancy in women in France. We used a catalytic model to estimate incidence and prevalence of Toxoplasma infection between 1980 and 2020 in women of childbearing age. We used age- and time-specific seroprevalence data obtained from the National Perinatal Surveys (NPS) conducted in 1995, 2003 and 2010. We assumed that incidence depends both on age and calendar time, and can be expressed as the product of two unknown functions. We also estimated incidence of seroconversion during pregnancy in 2010 from the NPS and the National Surveillance of Congenital Toxoplasmosis (ToxoSurv). We combined data of 42208 women aged 15-45 years with serology available from the three NPS. For women aged 30 years the modelled incidence decreased from 7·5/1000 susceptible women in 1980 to 3·5/1000 in 2000. In 2010 the incidence was 2·4/1000. The predicted incidence and prevalence for 2020 was 1·6/1000 and 27%, respectively. The incidence of seroconversion during pregnancy in 2010 was estimated at 2·1/1000 susceptible pregnant women (95% CI 1·3-3·1) from the NPS and 1·9 (95% CI 1·8-2·1) from ToxoSurv. Incidence and prevalence of Toxoplasma infection has decreased markedly during the last 30 years. This decrease may be explained by a lower exposure to the parasite by changes

  3. Improving Accuracy of Influenza-Associated Hospitalization Rate Estimates

    PubMed Central

    Reed, Carrie; Kirley, Pam Daily; Aragon, Deborah; Meek, James; Farley, Monica M.; Ryan, Patricia; Collins, Jim; Lynfield, Ruth; Baumbach, Joan; Zansky, Shelley; Bennett, Nancy M.; Fowler, Brian; Thomas, Ann; Lindegren, Mary L.; Atkinson, Annette; Finelli, Lyn; Chaves, Sandra S.

    2015-01-01

    Diagnostic test sensitivity affects rate estimates for laboratory-confirmed influenza–associated hospitalizations. We used data from FluSurv-NET, a national population-based surveillance system for laboratory-confirmed influenza hospitalizations, to capture diagnostic test type by patient age and influenza season. We calculated observed rates by age group and adjusted rates by test sensitivity. Test sensitivity was lowest in adults >65 years of age. For all ages, reverse transcription PCR was the most sensitive test, and use increased from <10% during 2003–2008 to ≈70% during 2009–2013. Observed hospitalization rates per 100,000 persons varied by season: 7.3–50.5 for children <18 years of age, 3.0–30.3 for adults 18–64 years, and 13.6–181.8 for adults >65 years. After 2009, hospitalization rates adjusted by test sensitivity were ≈15% higher for children <18 years, ≈20% higher for adults 18–64 years, and ≈55% for adults >65 years of age. Test sensitivity adjustments improve the accuracy of hospitalization rate estimates. PMID:26292017

  4. Kostant polynomials and the cohomology ring for G/B

    PubMed Central

    Billey, Sara C.

    1997-01-01

    The Schubert calculus for G/B can be completely determined by a certain matrix related to the Kostant polynomials introduced in section 5 of Bernstein, Gelfand, and Gelfand [Bernstein, I., Gelfand, I. & Gelfand, S. (1973) Russ. Math. Surv. 28, 1–26]. The polynomials are defined by vanishing properties on the orbit of a regular point under the action of the Weyl group. For each element w in the Weyl group the polynomials also have nonzero values on the orbit points corresponding to elements which are larger in the Bruhat order than w. The main theorem given here is an explicit formula for these values. The matrix of orbit values can be used to determine the cup product for the cohomology ring for G/B, using only linear algebra or as described by Lascoux and Schützenberger [Lascoux, A. & Schützenberger, M.-P. (1982) C. R. Seances Acad. Sci. Ser. A 294, 447–450]. Complete proofs of all the theorems will appear in a forthcoming paper. PMID:11038536

  5. Self-reported attitudes, skills and use of evidence-based practice among Canadian doctors of chiropractic: a national survey

    PubMed Central

    Bussières, André E.; Terhorst, Lauren; Leach, Matthew; Stuber, Kent; Evans, Roni; Schneider, Michael J.

    2015-01-01

    Objectives: To identify Canadian chiropractors’ attitudes, skills and use of evidence based practice (EBP), as well as their level of awareness of previously published chiropractic clinical practice guidelines (CPGs). Methods: 7,200 members of the Canadian Chiropractic Association were invited by e-mail to complete an online version of the Evidence Based practice Attitude & utilisation SurvEy (EBASE); a valid and reliable measure of participant attitudes, skills and use of EBP. Results: Questionnaires were completed by 554 respondents. Most respondents (>75%) held positive attitudes toward EBP. Over half indicated a high level of self-reported skills in EBP, and over 90% expressed an interest in improving these skills. A majority of respondents (65%) reported over half of their practice was based on evidence from clinical research, and only half (52%) agreed that chiropractic CPGs significantly impacted on their practice. Conclusions: While most Canadian chiropractors held positive attitudes towards EBP, believed EBP was useful, and were interested in improving their skills in EBP, many did not use research evidence or CPGs to guide clinical decision making. Our findings should be interpreted cautiously due to the low response rate. PMID:26816412

  6. Parametric regression model for survival data: Weibull regression model as an example

    PubMed Central

    2016-01-01

    Weibull regression model is one of the most popular forms of parametric regression model that it provides estimate of baseline hazard function, as well as coefficients for covariates. Because of technical difficulties, Weibull regression model is seldom used in medical literature as compared to the semi-parametric proportional hazard model. To make clinical investigators familiar with Weibull regression model, this article introduces some basic knowledge on Weibull regression model and then illustrates how to fit the model with R software. The SurvRegCensCov package is useful in converting estimated coefficients to clinical relevant statistics such as hazard ratio (HR) and event time ratio (ETR). Model adequacy can be assessed by inspecting Kaplan-Meier curves stratified by categorical variable. The eha package provides an alternative method to model Weibull regression model. The check.dist() function helps to assess goodness-of-fit of the model. Variable selection is based on the importance of a covariate, which can be tested using anova() function. Alternatively, backward elimination starting from a full model is an efficient way for model development. Visualization of Weibull regression model after model development is interesting that it provides another way to report your findings. PMID:28149846

  7. Applying the Theory of Planned Behavior to Explain Women's Role in Prostate Cancer Screening.

    PubMed

    Di Sarra, Luca; Ghezzi, Valerio; Eastland, Taryn Yolanda; Antonini, Francesca; Scialó, Gennaro; Zega, Maurizio; Alvaro, Rosaria

    2015-01-01

    To test the suitability of the theory of planned behavior (TPB) for explaining Italian women's role in prostatic cancer screening promotion. A descriptive, cross-sectional, online self-report survey was conducted with a convenience sample of 235 Italian women. Variables included attitudes women's role, perceived behavioral control, subjective norm, behavioral intention, and prostate cancer screening promotion behavior. A survey composed of the Eastland Prostate Cancer Survey subscales that were consistent with the TPB was distributed via e-mail to potential participants. The survey was live for 12 weeks (March 2013 to May 2013). Responses were collated with eSurv.org. Data were analyzed using latent path analysis and structural equation modeling. Behavioral intentions in promoting prostate cancer screening significantly predicted the likelihood of the Italian women to adopt self-reported prostate cancer screening promotion behaviors. In addition, the exclusive direct impact of the intentions explained 39% of the variance in self-reported behaviors. The TPB could represent a good framework to explain the role of Italian women in prevention behaviors related to the prostatic screening domain. Consistent with literature findings in social and nursing sciences, the intention to promote prostate cancer screening was a powerful "predictor" of the behavior itself.

  8. Conformal invariance of the Lungren-Monin-Novikov equations for vorticity fields in 2D turbulence

    NASA Astrophysics Data System (ADS)

    Grebenev, V. N.; Wacławczyk, M.; Oberlack, M.

    2017-10-01

    We study the statistical properties of the vorticity field in two-dimensional turbulence. The field is described in terms of the infinite Lundgren-Monin-Novikov (LMN) chain of equations for multi-point probability density functions (pdf’s) of vorticity. We perform a Lie group analysis of the first equation in this chain using the direct method based on the canonical Lie-Bäcklund transformations devised for integro-differential equations. We analytically show that the conformal group is broken for the first LMN equation i.e. for the 1-point pdf at least for the inviscid case but the equation is still conformally invariant on the associated characteristic with zero-vorticity. Then, we demonstrate that this characteristic is conformally transformed. We find this outcome coincides with the numerical results about the conformal invariance of the statistics of zero-vorticity isolines, see e.g. Falkovich (2007 Russian Math. Surv. 63 497-510). The conformal symmetry can be understood as a ‘local scaling’ and its traces in two-dimensional turbulence were already discussed in the literature, i.e. it was conjectured more than twenty years ago in Polyakov (1993 Nucl. Phys. B 396 367-85) and clearly validated experimentally in Bernard et al (2006 Nat. Phys. 2 124-8).

  9. Roundway, Wiltshire County Asylum attendants and nurses, 1881-1905: a window onto Victorian sobriety.

    PubMed

    Russell, D

    2000-01-01

    The only detailed surving Male and Female Registers of Roundway provide a rich documentary glimpse of nineteenth century mental health care staff. An analysis is made of what constituted desirable behavior and problems occurring in the workplace. More primary source material has been gathered from visitors books, medical superintendents' reports, patient case records, admission/discharge registers and account books. An attempt will be made to show how the dominant characteristics of Victorianism shaped the lives of the staff. Religion, morality and personal qualities appear more influential than scientific inquiry in determining the pattern of events. The 'Asylum for the Pauper Insane of the County of Wiltshire' later came to be called 'Roundway Hospital'. It is commonly remembered as 'Roundway' and that is how it is referred to here. The nursing staff changed their titles in minor ways during the period considered, but for convenience the dominant titles - 'attendants' for men and 'nurses' for women - are used. The period chosen, 1881-1905, begins from when Dr John Bowes was appointed Medical Superintendent and started to write in the new Staff Registers. The period finishes when he ceased to make entries. There are no detailed registers for any other nineteenth century period.

  10. Does Influenza Vaccination Modify Influenza Severity? Data on Older Adults Hospitalized With Influenza During the 2012-2013 Season in the United States.

    PubMed

    Arriola, Carmen S; Anderson, Evan J; Baumbach, Joan; Bennett, Nancy; Bohm, Susan; Hill, Mary; Lindegren, Mary Lou; Lung, Krista; Meek, James; Mermel, Elizabeth; Miller, Lisa; Monroe, Maya L; Morin, Craig; Oni, Oluwakemi; Reingold, Arthur; Schaffner, William; Thomas, Ann; Zansky, Shelley M; Finelli, Lyn; Chaves, Sandra S

    2015-10-15

    Some studies suggest that influenza vaccination might be protective against severe influenza outcomes in vaccinated persons who become infected. We used data from a large surveillance network to further investigate the effect of influenza vaccination on influenza severity in adults aged ≥50 years who were hospitalized with laboratory-confirmed influenza. We analyzed influenza vaccination and influenza severity using Influenza Hospitalization Surveillance Network (FluSurv-NET) data for the 2012-2013 influenza season. Intensive care unit (ICU) admission, death, diagnosis of pneumonia, and hospital and ICU lengths of stay served as measures of disease severity. Data were analyzed by multivariable logistic regression, parametric survival models, and propensity score matching (PSM). Overall, no differences in severity were observed in the multivariable logistic regression model. Using PSM, adults aged 50-64 years (but not other age groups) who were vaccinated against influenza had a shorter length of ICU stay than those who were unvaccinated (hazard ratio for discharge, 1.84; 95% confidence interval, 1.12-3.01). Our findings show a modest effect of influenza vaccination on disease severity. Analysis of data from seasons with different predominant strains and higher estimates of vaccine effectiveness are needed. Published by Oxford University Press on behalf of the Infectious Diseases Society of America 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

  11. A four-gene signature predicts survival in clear-cell renal-cell carcinoma.

    PubMed

    Dai, Jun; Lu, Yuchao; Wang, Jinyu; Yang, Lili; Han, Yingyan; Wang, Ying; Yan, Dan; Ruan, Qiurong; Wang, Shaogang

    2016-12-13

    Clear-cell renal-cell carcinoma (ccRCC) is the most common pathological subtype of renal cell carcinoma (RCC), accounting for about 80% of RCC. In order to find potential prognostic biomarkers in ccRCC, we presented a four-gene signature to evaluate the prognosis of ccRCC. SurvExpress and immunohistochemical (IHC) staining of tissue microarrays were used to analyze the association between the four genes and the prognosis of ccRCC. Data from TCGA dataset revealed a prognostic prompt function of the four genes (PTEN, PIK3C2A, ITPA and BCL3). Further discovery suggested that the four-gene signature predicted survival better than any of the four genes alone. Moreover, IHC staining demonstrated a consistent result with TCGA, indicating that the signature was an independent prognostic factor of survival in ccRCC. Univariate and multivariate Cox proportional hazard regression analysis were conducted to verify the association of clinicopathological variables and the four genes' expression levels with survival. The results further testified that the risk (four-gene signature) was an independent prognostic factors of both Overall Survival (OS) and Disease-free Survival (DFS) (P<0.05). In conclusion, the four-gene signature was correlated with the survival of ccRCC, and therefore, may help to provide significant clinical implications for predicting the prognosis of patients.

  12. Generalized Accelerated Failure Time Spatial Frailty Model for Arbitrarily Censored Data

    PubMed Central

    Zhou, Haiming; Hanson, Timothy; Zhang, Jiajia

    2017-01-01

    Flexible incorporation of both geographical patterning and risk effects in cancer survival models is becoming increasingly important, due in part to the recent availability of large cancer registries. Most spatial survival models stochastically order survival curves from different subpopulations. However, it is common for survival curves from two subpopulations to cross in epidemiological cancer studies and thus interpretable standard survival models can not be used without some modification. Common fixes are the inclusion of time-varying regression effects in the proportional hazards model or fully non-parametric modeling, either of which destroys any easy interpretability from the fitted model. To address this issue, we develop a generalized accelerated failure time model which allows stratification on continuous or categorical covariates, as well as providing per-variable tests for whether stratification is necessary via novel approximate Bayes factors. The model is interpretable in terms of how median survival changes and is able to capture crossing survival curves in the presence of spatial correlation. A detailed Markov chain Monte Carlo algorithm is presented for posterior inference and a freely available function frailtyGAFT is provided to fit the model in the R package spBayesSurv. We apply our approach to a subset of the prostate cancer data gathered for Louisiana by the Surveillance, Epidemiology, and End Results program of the National Cancer Institute. PMID:26993982

  13. The epidemiology of rheumatic fever in the Tairawhiti/Gisborne region of New Zealand: 1997-2009.

    PubMed

    Siriett, Victoria; Crengle, Sue; Lennon, Diana; Stonehouse, Mary; Cramp, Geoffrey

    2012-11-09

    To establish Acute Rheumatic Fever (ARF) rates within the Tairawhiti District Health Board (1997-2009) to identify communities for primary prevention programmes. ARF cases (1997-2009) sought by audit of Gisborne Hospital admissions, penicillin prophylaxis lists and the EpiSurv notifiable disease database. ARF rates (n=44 cases) during 1997 to 2009 (7.6/100,000) with a continuing significant disparity between Maori (n=40, 15.2/100,000) and non-Maori, (n=3, 1.1/100,000). One case was Pacific. This disparity was marked in school-aged children (5-14 years: Maori 59/100,000 vs non-Maori 8/100,000). Over 80% of ARF cases demonstrated heart damage (18% moderate, 20% severe and 8% requiring heart surgery). ARF cases were strongly associated with living and schooling within high deprivation areas Forty ARF cases were enrolled in 13/21 Gisborne schools, 4/18 East Coast schools and 2/17 western rural schools. (No school for 8 cases). When assessed as a percentage of school rolls there were no discernable differences between primary, intermediate and secondary schools. Of the 44 cases, 35 (80%) resided in areas of NZDep06 score 8-10 (most deprived). Very high ARF rates were recorded in the 1960's; the continuing burden of ARF in Maori children indicate a strong requirement for primary prevention strategies. Progress has plateaued in the last 20 years.

  14. Short note: the experimental geopotential model XGM2016

    NASA Astrophysics Data System (ADS)

    Pail, R.; Fecher, T.; Barnes, D.; Factor, J. F.; Holmes, S. A.; Gruber, T.; Zingerle, P.

    2018-04-01

    As a precursor study for the upcoming combined Earth Gravitational Model 2020 (EGM2020), the Experimental Gravity Field Model XGM2016, parameterized as a spherical harmonic series up to degree and order 719, is computed. XGM2016 shares the same combination methodology as its predecessor model GOCO05c (Fecher et al. in Surv Geophys 38(3): 571-590, 2017. doi: 10.1007/s10712-016-9406-y). The main difference between these models is that XGM2016 is supported by an improved terrestrial data set of 15^' × 15^' gravity anomaly area-means provided by the United States National Geospatial-Intelligence Agency (NGA), resulting in significant upgrades compared to existing combined gravity field models, especially in continental areas such as South America, Africa, parts of Asia, and Antarctica. A combination strategy of relative regional weighting provides for improved performance in near-coastal ocean regions, including regions where the altimetric data are mostly unchanged from previous models. Comparing cumulative height anomalies, from both EGM2008 and XGM2016 at degree/order 719, yields differences of 26 cm in Africa and 40 cm in South America. These differences result from including additional information of satellite data, as well as from the improved ground data in these regions. XGM2016 also yields a smoother Mean Dynamic Topography with significantly reduced artifacts, which indicates an improved modeling of the ocean areas.

  15. Anti-müllerian hormone and ovarian reserve in systemic lupus erythematosus.

    PubMed

    Martins, Nádia Filipa Esteves; Seixas, Maria Inês; Pereira, Joaquim Polido; Costa, Maria Manuela; Fonseca, João Eurico

    2017-12-01

    Systemic lupus erythematosus (SLE) is a chronic immune-mediated inflammatory disease that affects predominantly females during childbearing age (Lateef and Petri Best Pract Res Clin Rheumatol 27(3):435-447, 2013). Fertility in SLE patients is considered to be normal (Clowse et al. Arthritis Care Res (Hoboken) 64(5):668-674, 2012; Ekblom-Kullberg et al. Scand J Rheumatol 38:375-380, 2009) but several known factors may negatively influence fertility. Immune mechanisms are also thought to be an important cause of premature ovarian senescence, characterized by reduced ovarian reserve markers such as anti-Müllerian hormone (AMH) (Oktem et al. Obstet Gynecol Surv 70(3):196-210, 2015; Bermas and Sammaritano Fertil Res Pract 1:13, 2015; Østensen Int J Clin Rheumtol 8(1):27-37, 2013; Ulug et al. Am J Reprod Immunol 72(1):85-88, 2014; Lawrenz et al. Lupus 20(11):1193-1197, 2011). We evaluated the ovarian reserve of women in reproductive age with SLE, by measuring AMH levels and we compared it to that of non-SLE women. We also analyzed the association of SLE disease characteristics with AMH levels. AMH levels were decreased in this population of SLE women, accounting for a high proportion of women with criteria for low ovarian reserve. Age and SLE damage were associated with abnormally lower AMH levels in our SLE patients. In this way, SLE may have a negative influence on the ovarian reserve.

  16. Late Pleistocene eolian features in southeastern Maryland and Chesapeake Bay region indicate strong WNW-NW winds accompanied growth of the Laurentide Ice Sheet

    NASA Astrophysics Data System (ADS)

    Markewich, Helaine W.; Litwin, Ronald J.; Pavich, Milan J.; Brook, George A.

    2009-05-01

    Inactive parabolic dunes are present in southeastern Maryland, USA, along the east bank of the Potomac River. More elongate and finer-grained eolian deposits and paha-like ridges characterize the Potomac River-Patuxent River upland and the west side of Chesapeake Bay. These ridges are streamlined erosional features, veneered with eolian sediment and interspersed with dunes in the low-relief headwaters of Potomac- and Patuxent-river tributaries. Axis data for the dunes and ridges indicate formation by WNW-NW winds. Optically stimulated luminescence and radiocarbon age data suggest dune formation from ˜ 33-15 ka, agreeing with the 30-13 ka ages Denny, C.S., Owens, J.P., Sirkin, L., Rubin, M., 1979. The Parsonburg Sand in the central Delmarva Peninsula, Maryland and Delaware. U.S. Geol. Surv. Prof. Pap. 1067-B, 16 pp. suggested for eolian deposits east of Chesapeake Bay. Age range and paleowind direction(s) for eolian features in the Bay region approximate those for late Wisconsin loess in the North American midcontinent. Formation of midcontinent loess and Bay-region eolian features was coeval with rapid growth of the Laurentide Ice Sheet and strong cooling episodes (δ 18O minima) evident in Greenland ice cores. Age and paleowind-direction coincidence, for eolian features in the midcontinent and Bay region, indicates strong mid-latitude WNW-NW winds for several hundred kilometers south of the Laurentide glacial terminus that were oblique to previously simulated anticyclonic winds for the last glacial maximum.

  17. Late Pleistocene eolian features in southeastern Maryland and Chesapeake Bay region indicate strong WNW-NW winds accompanied growth of the Laurentide Ice Sheet

    USGS Publications Warehouse

    Markewich, H.W.; Litwin, R.J.; Pavich, M.J.; Brook, G.A.

    2009-01-01

    Inactive parabolic dunes are present in southeastern Maryland, USA, along the east bank of the Potomac River. More elongate and finer-grained eolian deposits and paha-like ridges characterize the Potomac River-Patuxent River upland and the west side of Chesapeake Bay. These ridges are streamlined erosional features, veneered with eolian sediment and interspersed with dunes in the low-relief headwaters of Potomac- and Patuxent-river tributaries. Axis data for the dunes and ridges indicate formation by WNW-NW winds. Optically stimulated luminescence and radiocarbon age data suggest dune formation from ??? 33-15??ka, agreeing with the 30-13??ka ages Denny, C.S., Owens, J.P., Sirkin, L., Rubin, M., 1979. The Parsonburg Sand in the central Delmarva Peninsula, Maryland and Delaware. U.S. Geol. Surv. Prof. Pap. 1067-B, 16??pp. suggested for eolian deposits east of Chesapeake Bay. Age range and paleowind direction(s) for eolian features in the Bay region approximate those for late Wisconsin loess in the North American midcontinent. Formation of midcontinent loess and Bay-region eolian features was coeval with rapid growth of the Laurentide Ice Sheet and strong cooling episodes (??18O minima) evident in Greenland ice cores. Age and paleowind-direction coincidence, for eolian features in the midcontinent and Bay region, indicates strong mid-latitude WNW-NW winds for several hundred kilometers south of the Laurentide glacial terminus that were oblique to previously simulated anticyclonic winds for the last glacial maximum.

  18. Cumulative HIV viremia during highly active antiretroviral therapy is a strong predictor of AIDS-related lymphoma.

    PubMed

    Zoufaly, Alexander; Stellbrink, Hans-Jürgen; Heiden, Matthias An der; Kollan, Christian; Hoffmann, Christian; van Lunzen, Jan; Hamouda, Osamah

    2009-07-01

    AIDS-related lymphoma contributes to significant morbidity and mortality among human immunodeficiency virus (HIV)-infected patients receiving highly active antiretroviral therapy (HAART). We assessed the predictive role of cumulative HIV viremia and other risk factors in the development of AIDS-related non-Hodgkin lymphoma. Data from the Clinical Surveillance of HIV Disease (ClinSurv) study, an ongoing, observational, open cohort study of HIV-infected patients from different urban areas in Germany, were analyzed using a Cox proportional hazards model. In the Cox model, which comprised 6022 patients and 27,812 patient-years of follow-up while patients were receiving HAART from 1999 through 2006, cumulative HIV viremia was found to be independently associated with the risk of lymphoma (hazard ratio, [HR], 1.67 [95% confidence interval {CI}, 1.27-2.20]) (P < .001]). This association differed markedly between lymphoma subtypes. Although the association was more pronounced for Burkitt-type lymphoma (HR, 3.45 [95% CI, 1.52-7.85]) (P = .003), there was no association between cumulative HIV viremia and the incidence of primary central nervous system lymphoma (HR, 1.00 [95% CI, 0.39-2.57]) (P = .997). Other risk factors associated with an increased risk in a multivariable analysis included the latest CD4 T cell count as well as age per 10-year increment. Cumulative HIV viremia is an independent and strong predictor of AIDS-related lymphoma among patients receiving HAART. The influence of cumulative HIV viremia may differ between lymphoma subtypes.

  19. The Tyrrhena-Malea Volcanic Province, Mars: Overview

    NASA Astrophysics Data System (ADS)

    Williams, D.; Greeley, R.; Ferguson, R.; Kuzmin, R.; McCord, T.; Combe, J.-P.; Head, J.; Xiao, L.; Manfredi, L.; Poulet, F.; Pinet, P.; Baratoux, D.; Plaut, J. J.; Raitala, J.; Neukum, G.

    2008-09-01

    `softened' appearance of their surfaces, but they do contain pedestal and ejecta flow craters and large, smooth, bright plateaus in their central depressions. This morphology is indicative of a surface with not only a high water ice content, but also a more consolidated material that is less susceptible to degradation (relative to the other four volcanoes). We suggest that Malea and Pityusa (and possibly Peneus) Paterae are Martian equivalents to Earth's giant calderas (e.g., Yellowstone, Long Valley) that erupted large volumes of volcanic materials, and that Malea and Pityusa are probably composed of either lava flows or ignimbrites. HRSC and OMEGA spectral data indicate that dark gray to slightly red materials (often represented as blue or black pixels in HRSC color images), found in the patera floors and topographic lows throughout the T-MVP, have a basaltic composition. A key issue is whether this dark material represents concentrations of underlying basaltic material exposed by aeolian winnowing, or if the material was transported from elsewhere on Mars by regional winds. Understanding the provenance of these dark materials may be the key to understanding the volcanic diversity of the Tyrrhena-Malea Volcanic Province. References [1] Crown, D. and Greeley, R. (2007) U.S. Geol. Surv. Sci. Inves. Ser. Map 2936. [2] Gregg, T., et al. (1998) U.S. Geol. Surv. Map I- 2556. [3] Leonard, G. and Tanaka, K. (2001) U. S. Geol. Survey Misc. Invest. Series Map I-2694. [4] Kolb, E. and Tanaka, K. (2008) Geologic Map of the Planum Australe Region of Mars. U. S. Geol. Survey. Misc. Investigation Series, in review. [5] Peterson, J. (1978) Proc. 9th LPSC, 3411-3432.

  20. Aminopeptidase A initiates tumorigenesis and enhances tumor cell stemness via TWIST1 upregulation in colorectal cancer

    PubMed Central

    Chuang, Hui-Yu; Jiang, Jeng-Kae; Yang, Muh-Hwa; Wang, Hsei-Wei; Li, Ming-Chun; Tsai, Chan-Yen; Jhang, Yau-Yun; Huang, Jason C.

    2017-01-01

    Metastasis accounts for the high mortality rate associated with colorectal cancer (CRC), but metastasis regulators are not fully understood. To identify a novel gene involved in tumor metastasis, we used oligonucleotide microarrays, transcriptome distance analyses, and machine learning algorithms to determine links between primary and metastatic colorectal cancers. Aminopeptidase A (APA; also known as ENPEP) was selected as our focus because its relationship with colorectal cancer requires clarification. Higher APA mRNA levels were observed in patients in advanced stages of cancer, suggesting a correlation between ENPEP and degree of malignancy. Our data also indicate that APA overexpression in CRC cells induced cell migration, invasion, anchorage-independent capability, and mesenchyme-like characteristics (e.g., EMT markers). We also observed TWIST induction in APA-overexpressing SW480 cells and TWIST down-regulation in HT29 cells knocked down with APA. Both APA silencing and impaired APA activity were found to reduce migratory capacity, cancer anchorage, stemness properties, and drug resistance in vitro and in vivo. We therefore suggest that APA enzymatic activity affects tumor initiation and cancer malignancy in a TWIST-dependent manner. Results from RT-qPCR and the immunohistochemical staining of specimens taken from CRC patients indicate a significant correlation between APA and TWIST. According to data from SurvExpress analyses of TWIST1 and APA mRNA expression profiles, high APA and TWIST expression are positively correlated with poor CRC prognosis. APA may act as a prognostic factor and/or therapeutic target for CRC metastasis and recurrence. PMID:28177885

  1. Influence of the surface permeability on the GRACE water mass variations. Case of the Lake Chad basin.

    NASA Astrophysics Data System (ADS)

    Lopez, T.; Ramillien, G.; Antoine, R.; Darrozes, J.; Rabinowicz, M.

    2017-12-01

    Since its launch in 2002, the Gravity Recovery And Climate Experiment (GRACE) has been measured the tiny variations of the gravity field due to redistributions of water mass in the surface envelops of Earth. At a spatial resolution of 400 km, these satellite data offer a unique perspective to understand the evolution of continental water storage at regional and global scales, and therefore they enable the monitoring of the hydrological systems such as river basins. It is well known that seasonal cycle, droughts, vegetation and human extractions are the main contributors of the hydrology signals sensed by GRACE. However, the coupling between land surface and the atmosphere is important in semi-arid and arid regions, in particular in West Africa [1]. We propose to quantify the surface water fluxes in the Lake Chad region by using the 10-day water mass solutions of the GRACE mission in the context of the regular West African monsoon. Alternation of the evaporation/condensation cycles during the recent period are interpreted in terms of surface vertical permeability changes that control the thermal evolution in this region [2]. GRACE solutions reveal an interannual increase of surface water mass at the beginning of the dry seasons, especially between 2005 and 2008. We propose that this gain of surface water mass is caused by a seasonal cycle of clay fracturing that controls the evaporation/condensation cycle. [1] Koster et al. (2004). Science, 305, 1138-1140. [2] Lopez et al. (2016). Surv. Geophys., 37 (2), 471-502.

  2. Episodic tectonic plate reorganizations driven by mantle convection

    NASA Astrophysics Data System (ADS)

    King, Scott D.; Lowman, Julian P.; Gable, Carl W.

    2002-10-01

    Periods of relatively uniform plate motion were interrupted several times throughout the Cenozoic and Mesozoic by rapid plate reorganization events [R. Hey, Geol. Soc. Am. Bull. 88 (1977) 1404-1420; P.A. Rona, E.S. Richardson, Earth Planet. Sci. Lett. 40 (1978) 1-11; D.C. Engebretson, A. Cox, R.G. Gordon, Geol. Soc. Am. Spec. Pap. 206 (1985); R.G. Gordon, D.M. Jurdy, J. Geophys. Res. 91 (1986) 12389-12406; D.A. Clague, G.B. Dalrymple, US Geol. Surv. Prof. Pap. 1350 (1987) 5-54; J.M. Stock, P. Molnar, Nature 325 (1987) 495-499; C. Lithgow-Bertelloni, M.A. Richards, Geophys. Res. Lett. 22 (1995) 1317-1320; M.A. Richards, C. Lithgow-Bertelloni, Earth Planet. Sci. Lett. 137 (1996) 19-27; C. Lithgow-Bertelloni, M.A. Richards, Rev. Geophys. 36 (1998) 27-78]. It has been proposed that changes in plate boundary forces are responsible for these events [M.A. Richards, C. Lithgow-Bertelloni, Earth Planet. Sci. Lett. 137 (1996) 19-27; C. Lithgow-Bertelloni, M.A. Richards, Rev. Geophys. 36 (1998) 27-78]. We present an alternative hypothesis: convection-driven plate motions are intrinsically unstable due to a buoyant instability that develops as a result of the influence of plates on an internally heated mantle. This instability, which has not been described before, is responsible for episodic reorganizations of plate motion. Numerical mantle convection experiments demonstrate that high-Rayleigh number convection with internal heating and surface plates is sufficient to induce plate reorganization events, changes in plate boundary forces, or plate geometry, are not required.

  3. Frequent eruptions of Mount Rainier over the last ˜2,600 years

    NASA Astrophysics Data System (ADS)

    Sisson, T. W.; Vallance, J. W.

    2009-08-01

    Field, geochronologic, and geochemical evidence from proximal fine-grained tephras, and from limited exposures of Holocene lava flows and a small pyroclastic flow document ten-12 eruptions of Mount Rainier over the last 2,600 years, contrasting with previously published evidence for only 11-12 eruptions of the volcano for all of the Holocene. Except for the pumiceous subplinian C event of 2,200 cal year BP, the late-Holocene eruptions were weakly explosive, involving lava effusions and at least two block-and-ash pyroclastic flows. Eruptions were clustered from ˜2,600 to ˜2,200 cal year BP, an interval referred to as the Summerland eruptive period that includes the youngest lava effusion from the volcano. Thin, fine-grained tephras are the only known primary volcanic products from eruptions near 1,500 and 1,000 cal year BP, but these and earlier eruptions were penecontemporaneous with far-traveled lahars, probably created from newly erupted materials melting snow and glacial ice. The most recent magmatic eruption of Mount Rainier, documented geochemically, was the 1,000 cal year BP event. Products from a proposed eruption of Mount Rainier between AD 1820 and 1854 (X tephra of Mullineaux (US Geol Surv Bull 1326:1-83, 1974)) are redeposited C tephra, probably transported onto young moraines by snow avalanches, and do not record a nineteenth century eruption. We found no conclusive evidence for an eruption associated with the clay-rich Electron Mudflow of ˜500 cal year BP, and though rare, non-eruptive collapse of unstable edifice flanks remains as a potential hazard from Mount Rainier.

  4. Frequent eruptions of Mount Rainier over the last ∼2,600 years

    USGS Publications Warehouse

    Sisson, T.W.; Vallance, J.W.

    2009-01-01

    Field, geochronologic, and geochemical evidence from proximal fine-grained tephras, and from limited exposures of Holocene lava flows and a small pyroclastic flow document ten–12 eruptions of Mount Rainier over the last 2,600 years, contrasting with previously published evidence for only 11–12 eruptions of the volcano for all of the Holocene. Except for the pumiceous subplinian C event of 2,200 cal year BP, the late-Holocene eruptions were weakly explosive, involving lava effusions and at least two block-and-ash pyroclastic flows. Eruptions were clustered from ∼2,600 to ∼2,200 cal year BP, an interval referred to as the Summerland eruptive period that includes the youngest lava effusion from the volcano. Thin, fine-grained tephras are the only known primary volcanic products from eruptions near 1,500 and 1,000 cal year BP, but these and earlier eruptions were penecontemporaneous with far-traveled lahars, probably created from newly erupted materials melting snow and glacial ice. The most recent magmatic eruption of Mount Rainier, documented geochemically, was the 1,000 cal year BP event. Products from a proposed eruption of Mount Rainier between AD 1820 and 1854 (X tephra of Mullineaux (US Geol Surv Bull 1326:1–83, 1974)) are redeposited C tephra, probably transported onto young moraines by snow avalanches, and do not record a nineteenth century eruption. We found no conclusive evidence for an eruption associated with the clay-rich Electron Mudflow of ∼500 cal year BP, and though rare, non-eruptive collapse of unstable edifice flanks remains as a potential hazard from Mount Rainier.

  5. Reaction of subsurface coastal aquifers to climate and land use changes in Greece: modelling of groundwater refreshening patterns under natural recharge conditions

    NASA Astrophysics Data System (ADS)

    Lambrakis, N.; Kallergis, G.

    2001-05-01

    This paper studies the multicomponent ion exchange process and freshening time under natural recharge conditions for three coastal aquifers in Greece. Due to over-pumping and the dry years of 1980-1990 decline in groundwater quality has been observed in most of the Greek coastal aquifers. This decline is caused by a lack of reliable water resource management, water abstraction from great depths, and seawater intrusion resulting in a rise of the fresh/salt water interface (salinisation process) due to a negative water balance. The reverse phenomenon, which should lead to groundwater freshening, is a long process. The freshening process shows chromatographic patterns that are due to chemical reactions such as calcite dissolution and cation exchange, and simultaneously occurring transport and dispersion processes. Using the geochemical simulation codes PHREEQE and PHREEQM (Parkhurst et al., US Geol. Surv. Water Resour. Invest., 80-96 (1980) 210; Appelo and Postma, Geochemistry, Groundwater and Pollution (1994)), these patterns were analysed and the above-mentioned processes were simulated for carefully selected aquifers in Peloponnesus and Crete (Greece). Aquifers of the Quaternary basin of Glafkos in Peloponnesus, the Neogene formations in Gouves, Crete, and the carbonate aquifer of Malia, Crete, were examined as representative examples of Greek coastal aquifer salinisation. The results show that when pumping was discontinued, the time required for freshening under natural conditions of the former two aquifers is long and varies between 8000 and 10,000 years. The Malia aquifer on the other hand, has a freshening time of 15 years. Freshening time was shown to depend mainly on cation exchange capacities and the recharge rate of the aquifers.

  6. Influenza-Related Hospitalizations and Poverty Levels - United States, 2010-2012.

    PubMed

    Hadler, James L; Yousey-Hindes, Kimberly; Pérez, Alejandro; Anderson, Evan J; Bargsten, Marisa; Bohm, Susan R; Hill, Mary; Hogan, Brenna; Laidler, Matt; Lindegren, Mary Lou; Lung, Krista L; Mermel, Elizabeth; Miller, Lisa; Morin, Craig; Parker, Erin; Zansky, Shelley M; Chaves, Sandra S

    2016-02-12

    Annual influenza vaccine is recommended for all persons aged ≥6 months in the United States, with recognition that some persons are at risk for more severe disease (1). However, there might be previously unrecognized demographic groups that also experience higher rates of serious influenza-related disease that could benefit from enhanced vaccination efforts. Socioeconomic status (SES) measures that are area-based can be used to define demographic groups when individual SES data are not available (2). Previous surveillance data analyses in limited geographic areas indicated that influenza-related hospitalization incidence was higher for persons residing in census tracts that included a higher percentage of persons living below the federal poverty level (3-5). To determine whether this association occurs elsewhere, influenza hospitalization data collected in 14 FluSurv-NET sites covering 27 million persons during the 2010-11 and 2011-12 influenza seasons were analyzed. The age-adjusted incidence of influenza-related hospitalizations per 100,000 person-years in high poverty (≥20% of persons living below the federal poverty level) census tracts was 21.5 (95% confidence interval [CI]: 20.7-22.4), nearly twice the incidence in low poverty (<5% of persons living below the federal poverty level) census tracts (10.9, 95% CI: 10.3-11.4). This relationship was observed in each surveillance site, among children and adults, and across racial/ethnic groups. These findings suggest that persons living in poorer census tracts should be targeted for enhanced influenza vaccination outreach and clinicians serving these persons should be made aware of current recommendations for use of antiviral agents to treat influenza (6).

  7. PEARS Emission Line Galaxies

    NASA Technical Reports Server (NTRS)

    Pirzkal, Nor; Rothberg, Barry; Ly, Chun; Rhoads, James E.; Malhotra, Sangeeta; Grogin, Norman A.; Dahlen, Tomas; Meurer, Gerhardt R.; Walsh, Jeremy; Hathi, Nimish P.; hide

    2012-01-01

    We present a full analysis of the Probing Evolution And Reionization Spectroscopically (PEARS) slitless grism spectroscopic data obtained vl'ith the Advanced Camera for Surveys on HST. PEARS covers fields within both the Great Observatories Origins Deep Survey (GOODS) North and South fields, making it ideal as a random surveY of galaxies, as well as the availability of a wide variety of ancillary observations to support the spectroscopic results. Using the PEARS data we are able to identify star forming galaxies within the redshift volume 0 < z < 1.5. Star forming regions in the PEARS survey are pinpointed independently of the host galaxy. This method allOW8 us to detect the presence of multiple emission line regions (ELRs) within a single galaxy. 1162 [OII], [OIII] and/or H-alpha emission lines have been identified in the PEARS sample of approx 906 galaxies down to a limiting flux of approx 10 - 18 erg/s/sq cm . The ELRs have also been compared to the properties of the host galaxy, including morphology, luminosity, and mass. From this analysis we find three key results: 1) The computed line luminosities show evidence of a flattening in the luminosity function with increasing redshift; 2) The star forming systems show evidence of disturbed morphologies, with star formation occurring predominantly within one effective (half-light) radius. However, the morphologies show no correlation with host stellar mass; and 3) The number density of star forming galaxies with M(*) >= 10(exp 9) Solar M decreases by an order of magnitude at z<=0.5 relative to the number at 0.5 < z < 0.9 in support of the argument for galaxy downsizing.

  8. A 1985-2015 data-driven global reconstruction of GRACE total water storage

    NASA Astrophysics Data System (ADS)

    Humphrey, Vincent; Gudmundsson, Lukas; Isabelle Seneviratne, Sonia

    2016-04-01

    After thirteen years of measurements, the Gravity Recovery and Climate Experiment (GRACE) mission has enabled for an unprecedented view on total water storage (TWS) variability. However, the relatively short record length, irregular time steps and multiple data gaps since 2011 still represent important limitations to a wider use of this dataset within the hydrological and climatological community especially for applications such as model evaluation or assimilation of GRACE in land surface models. To address this issue, we make use of the available GRACE record (2002-2015) to infer local statistical relationships between detrended monthly TWS anomalies and the main controlling atmospheric drivers (e.g. daily precipitation and temperature) at 1 degree resolution (Humphrey et al., in revision). Long-term and homogeneous monthly time series of detrended anomalies in total water storage are then reconstructed for the period 1985-2015. The quality of this reconstruction is evaluated in two different ways. First we perform a cross-validation experiment to assess the performance and robustness of the statistical model. Second we compare with independent basin-scale estimates of TWS anomalies derived by means of combined atmospheric and terrestrial water-balance using atmospheric water vapor flux convergence and change in atmospheric water vapor content (Mueller et al. 2011). The reconstructed time series are shown to provide robust data-driven estimates of global variations in water storage over large regions of the world. Example applications are provided for illustration, including an analysis of some selected major drought events which occurred before the GRACE era. References Humphrey V, Gudmundsson L, Seneviratne SI (in revision) Assessing global water storage variability from GRACE: trends, seasonal cycle, sub-seasonal anomalies and extremes. Surv Geophys Mueller B, Hirschi M, Seneviratne SI (2011) New diagnostic estimates of variations in terrestrial water storage

  9. National surveillance and control costs for highly pathogenic avian influenza H5N1 in poultry: A benefit-cost assessment for a developing economy, Nigeria.

    PubMed

    Fasanmi, Olubunmi G; Kehinde, Olugbenga O; Laleye, Agnes T; Ekong, Bassey; Ahmed, Syed S U; Fasina, Folorunso O

    2018-06-13

    We conducted benefit-cost analysis of outbreak and surveillance costs for HPAI H5N1in poultry in Nigeria. Poultry's death directly cost US$ 939,734.0 due to outbreaks. The integrated disease surveillance and response originally created for comprehensive surveillance and laboratory investigation of human diseases was adapted for HPAI H5N1 in poultry. Input data were obtained from the field, government documents and repositories and peer-reviewed publications. Actual/forecasted bird numbers lost were integrated into a financial model and estimates of losses were calculated. Costs of surveillance as alternative intervention were determined based on previous outbreak control costs and outputs were generated in SurvCost® with sensitivity analyses for different scenarios. Uncontrolled outbreaks will lead to loss of over US$ 2.2 billion annually in Nigeria with 47.8% of the losses coming from eggs. The annual cost of all animal related health activities was

  10. Whooping cough—where are we now? A review.

    PubMed

    Kiedrzynski, Tomasz; Bissielo, Ange; Suryaprakash, Mishra; Bandaranayake, Don

    2015-06-12

    This paper describes the recent trends of pertussis and vaccine uptake in New Zealand based on notifications and immunisation registration information since 2011. It highlights the current risk for the infant in the first months after birth and the crucial role a pertussis booster in pregnancy could play. It also aims to show that protection of infants by the acellular pertussis vaccine can be improved by timely immunisation even in a situation of improving overall uptake rates that are nearing the national target of 95%. We analysed New Zealand notification data for pertussis, extracted from EpiSurv between August 2011 and December 2013, which included the period of the last epidemic. Pertussis immunisation coverage data were extracted from the National Immunisation Register (NIR). Population estimates were based on 2006 census data. Deprivation was analysed using the New Zealand Deprivation Index 2006. Despite immunisation coverage at 12 months having exceeded 90% New Zealand experienced a large epidemic from 2011 to 2014, with several hundred infant hospitalisations and three deaths. Notification data indicated an average annual rate of pertussis in the New Zealand population of 102 per 100,000 with the highest rates in the youngest age groups. While an overall increase in immunisation coverage in New Zealand was evident and the timeliness showed improvement across ethnic groups and deprivation deciles, there was a marked geographical variation within DHBs and between ethnic groups. Given the recent published evidence, pertussis vaccination should be offered to all mothers between weeks 28 and 38 of pregnancy. Further improvements are still possible in coverage at 6 months, particularly in Māori and but also in Pacific populations, as well as in more deprived populations. DHBs work towards achieving the 95% target can contribute to the improvement in the timeliness of immunisation.

  11. One year analysis of time-lapse electrical data on a clayey landslide: identification of elementary hydrological processes

    NASA Astrophysics Data System (ADS)

    Gance, Julien; Sailhac, Pascal; Malet, Jean-Philippe; Supper, Robert; Jochum, Birgit; Ottowittz, David; Grandjean, Gilles

    2014-05-01

    Water infiltration, evaporation and runoff are responsible of changes in the topsoil water content and can influence slope stability which is very often the main controlling factor of landslide triggering. In this work, time-lapse monitoring of electrical conductivity is used to observe variations in soil water contents. Based on recent work which demonstrated the possibility of monitoring the hydrological response of a clayey slope to controlled rainfall experiments, we installed an electrical monitoring system at the Super-Sauze landslide for long-term observation. We used the GEOMON4D resistivimeter (developed by the Austrian Geological Surve) and specifically designed for experiments needing high rate of data acquisition, records of full signal samples for noise detection, remote controlled management and automatic data transfer. The electrode positions varying with time, we installed two cameras to control the position of the electrodes. Several hydrological sensors were also installed along the profile to measure soil temperature, groundwater temperature, groundwater level, groundwater conductivity and soil humidity. The challenge is the processing of 4.2 million of electrical resistivity data. In this difficult context, the possible factors controlling changes in resistivity values are the movement of the electrodes, the soil and water temperature, the change of porosity due to compaction and the soil degree of saturation. Therefore, before any inversion, the presence of possible 3D effects, and the measurement accuracy and uncertainty are assessed. A threshold in apparent resistivity change that could correspond to a change in soil saturation is determined. From those results, we investigate variations in the apparent resistivity. Responses to different hydrological processes (soil freezing/thawing, snow-melting, intense rainfall) occurring during the period of study are detected on resistivity values inversed on short periods.

  12. 207Pb-206Pb zircon ages of eastern and western Dharwar craton, southern India : Evidence for contemporaneous Archaean crust

    NASA Astrophysics Data System (ADS)

    Maibam, B.; Goswami, J. N.; Srinivasan, R.

    2009-04-01

    Dharwar craton is one of the major Archaean crustal blocks in the Indian subcontinent. The craton is comprised of two blocks, western and eastern. The western domain is underlain by orthogneisses and granodiorites (ca. 2.9-3.3 Ga) collectively termed as Peninsular Gneiss [e.g., 1] interspersed with older tracts of metasedimentary and metamorphosed igneous suites (Sargur Group and Dharwar Group; [2]). The eastern part of the craton is dominated by Late Archaean (2.50-2.75 Ga) granitoids and their gneissic equivalents. They are interspersed with schist belts (also of Sargur Group and Dharwar Group), which are lithologically similar to the Dharwar Supergroup in the western block, but are in different metamorphic dress. Here we report 207Pb-206Pb age of zircons separated from the metasedimentary and gneissic samples from the two blocks to constrain the evolution of the Dharwar craton during the early Archaean. Detrital zircons of the metasedimentary rocks from both the blocks show a wide range of overlapping ages between ~2.9 to >3.5 Ga. Zircon ages of the orthogneisses from the two blocks showed that most of the analysed grains of the eastern Dharwar block are found to be of the age as old as the western Dharwar gneisses. Imprints of younger events could be discerned from the presence of overgrowths in zircons from the studied samples throughout the craton. Our data suggest that crust forming cycles in the two blocks of the Dharwar craton occurred contemporaneously during the Archaean. References [1] Beckinsale, R.D., Drury, S.A., Holt, R.W. (1980) Nature 283, 469-470. [2] Swami Nath J., Ramakrishnan M., Viswanatha M.N. (1976) Rec. Geol. Surv. Ind., 107, 149-175.

  13. The "normal" elongation of river basins

    NASA Astrophysics Data System (ADS)

    Castelltort, Sebastien

    2013-04-01

    The spacing between major transverse rivers at the front of Earth's linear mountain belts consistently scales with about half of the mountain half-width [1], despite strong differences in climate and rock uplift rates. Like other empirical measures describing drainage network geometry this result seems to indicate that the form of river basins, among other properties of landscapes, is invariant. Paradoxically, in many current landscape evolution models, the patterns of drainage network organization, as seen for example in drainage density and channel spacing, seem to depend on both climate [2-4] and tectonics [5]. Hovius' observation [1] is one of several unexplained "laws" in geomorphology that still sheds mystery on how water, and rivers in particular, shape the Earth's landscapes. This narrow range of drainage network shapes found in the Earth's orogens is classicaly regarded as an optimal catchment geometry that embodies a "most probable state" in the uplift-erosion system of a linear mountain belt. River basins currently having an aspect away from this geometry are usually considered unstable and expected to re-equilibrate over geological time-scales. Here I show that the Length/Width~2 aspect ratio of drainage basins in linear mountain belts is the natural expectation of sampling a uniform or normal distribution of basin shapes, and bears no information on the geomorphic processes responsible for landscape development. This finding also applies to Hack's [6] law of river basins areas and lengths, a close parent of Hovius' law. [1]Hovius, N. Basin Res. 8, 29-44 (1996) [2]Simpson, G. & Schlunegger, F. J. Geophys. Res. 108, 2300 (2003) [3]Tucker, G. & Bras, R. Water Resour. Res. 34, 2751-2764 (1998) [4]Tucker, G. & Slingerland, R. Water Resour. Res. 33, 2031-2047 (1997) [5]Tucker, G. E. & Whipple, K. X. J. Geophys. Res. 107, 1-1 (2002) [6]Hack, J. US Geol. Surv. Prof. Pap. 294-B (1957)

  14. The separation distribution and merger rate of double white dwarfs: improved constraints

    NASA Astrophysics Data System (ADS)

    Maoz, Dan; Hallakoun, Na'ama; Badenes, Carles

    2018-05-01

    We obtain new and precise information on the double white dwarf (DWD) population and on its gravitational-wave-driven merger rate by combining the constraints on the DWD population from two previous studies on radial velocity variation. One of the studies is based on a sample of white dwarfs (WDs) from the Sloan Digital Sky Survey (SDSS, which with its low spectral resolution probes systems at separations a < 0.05 au) and the other is based on the ESO-VLT Supernova-Ia Progenitor surveY (SPY, which with its high spectral resolution is sensitive to a < 4 au). From a joint likelihood analysis, the DWD fraction among WDs is fbin = 0.095 ± 0.020 (1σ, random) +0.010 (systematic) in the separation range ≲4 au. The index of a power-law distribution of initial WD separations (at the start of solely gravitational-wave-driven binary evolution), N(a)da ∝ aαda, is α = -1.30 ± 0.15 (1σ) +0.05 (systematic). The Galactic WD merger rate per WD is Rmerge = (9.7 ± 1.1) × 10-12 yr-1. Integrated over the Galaxy lifetime, this implies that 8.5-11 per cent of all WDs ever formed have merged with another WD. If most DWD mergers end as more-massive WDs, then some 10 per cent of WDs are DWD-merger products, consistent with the observed fraction of WDs in a `high-mass bump' in the WD mass function. The DWD merger rate is 4.5-7 times the Milky Way's specific Type Ia supernova (SN Ia) rate. If most SN Ia explosions stem from the mergers of some DWDs (say, those with massive-enough binary components) then ˜15 per cent of all WD mergers must lead to a SN Ia.

  15. Impact of sex work on risk behaviours and their association with HIV positivity among people who inject drugs in Eastern Central Canada: cross-sectional results from an open cohort study.

    PubMed

    Campeau, Laurence; Blouin, Karine; Leclerc, Pascale; Alary, Michel; Morissette, Carole; Blanchette, Caty; Serhir, Bouchra; Roy, Elise

    2018-01-31

    The objectives of this study were: (1) to examine the correlates of HIV positivity among participants who injected drugs and engaged in sex work (PWID-SWs) in the SurvUDI network between 2004 and 2016, after stratification by sex, and (2) to compare these correlates with those of sexually active participants who did not engage in sex work (PWID non-SWs). This biobehavioural survey is an open cohort of services where participants who had injected in the past 6 months were recruited mainly through harm reduction programmes in Eastern Central Canada. Data from 5476 participants (9223 visits in total; 785 not included in multivariate analyses due to missing values) were included. Participants completed an interviewer-administered questionnaire and provided saliva samples for anti-HIV antibody testing. Generalised estimating equations taking into account multiple participations were used. Baseline HIV prevalence was higher among SWs compared with non-SWs (women: 13.0% vs 7.7%; P<0.001, and men: 17.4% vs 10.8%; P<0.001). PWID-SWs were particularly susceptible to HIV infection as a result of higher levels of vulnerability factors and injection risk behaviours. They also presented different risk-taking patterns than their non-SWs counterparts, as shown by differences in correlates of HIV positivity. Additionally, the importance of sex work for HIV infection varies according to gender, as suggested by a large proportion of injection risk behaviours associated with HIV among women and, conversely, a stronger association between sexual behaviours and HIV positivity observed among men. These results suggest that sex work has an impact on the risk of HIV acquisition and that risk behaviours vary according to gender. Public health practitioners should take those specificities into account when designing HIV prevention interventions aimed at PWIDs. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No

  16. Observing terrestrial water storage and land-atmosphere dynamics from space: Implications for forecasting and climate projections

    NASA Astrophysics Data System (ADS)

    Seneviratne, S. I.; Humphrey, V.; Nicolai-Shaw, N.; Gudmundsson, L.; Guillod, B.; Hirschi, M.; Michel, D.; Orth, R.; Zscheischler, J.

    2016-12-01

    In recent years, several new satellite products have been derived which allow an unprecendented assessment of terrestrial water storage and land-atmosphere dynamics. This presentation will review some of these new developments, with a focus on drought dynamics, plant-water interactions, and soil moisture-atmosphere feedbacks. Results derived based on the Gravity Recovery and Climate Experiment (GRACE, Humphrey et al. 2016) and the European Space Agency Climate Change Initiative (ESA CCI) Soil Moisture dataset (Nicolai-Shaw et al. 2015, 2016; Hirschi et al. 2014) will be highlighted, as well as assessments using satellite-based estimates of evapotranspiration (Mueller and Seneviratne 2014, Michel et al. 2016), vegetation activity (Zscheischler et al. 2015), and combined soil moisture and precipitation analyses (Guillod et al. 2015). These findings provide new insights on the development of prediction capabilities for droughts, precipitation events, and heat waves, and the reduction of uncertainties in climate model projections. References: Guillod, B.P., B. Orlowsky, D.G. Miralles, A.J. Teuling, and S.I. Seneviratne, 2015. Nature Communications, 6:6443, DOI: 10.1038/ncomms7443 Hirschi, M., B. Mueller, W. Dorigo, and S.I. Seneviratne, 2014. Remote Sensing of Environment, 154, 246-252. Humphrey, V., L. Gudmundsson, and S.I. Seneviratne, 2016. Surv. Geophysics, 37, 357-395, DOI 10.1007/s10712-016-9367-1. Michel, D., et al. 2016. Hydrol. Earth Syst. Sci. 20, 803-822, doi:10.5194/hess-20-803-2016. Mueller, M., and S.I. Seneviratne, 2014. Geophys. Res. Lett., 41, 1-7, doi:10.1002/2013GL058055. Nicolai-Shaw, N., L. Gudmundsson, M. Hirschi, and S.I. Seneviratne, 2016. Geophys. Res. Lett., in review. Nicolai-Shaw, N., M. Hirschi, H. Mittelbach, and S.I. Seneviratne, 2015. Journal of Geophysical Research, 120, doi:10.1002/2015JD023305. Zscheischler, J., R. Orth, and S.I. Seneviratne, 2015. Geophys. Res. Lett., 42, 9816-9824, doi:10.1002/2015GL066563.

  17. Structure and State of Stress of the Chilean Subduction Zone from Terrestrial and Satellite-Derived Gravity and Gravity Gradient Data

    NASA Astrophysics Data System (ADS)

    Gutknecht, B. D.; Götze, H.-J.; Jahr, T.; Jentzsch, G.; Mahatsente, R.; Zeumann, St.

    2014-11-01

    It is well known that the quality of gravity modelling of the Earth's lithosphere is heavily dependent on the limited number of available terrestrial gravity data. More recently, however, interest has grown within the geoscientific community to utilise the homogeneously measured satellite gravity and gravity gradient data for lithospheric scale modelling. Here, we present an interdisciplinary approach to determine the state of stress and rate of deformation in the Central Andean subduction system. We employed gravity data from terrestrial, satellite-based and combined sources using multiple methods to constrain stress, strain and gravitational potential energy (GPE). Well-constrained 3D density models, which were partly optimised using the combined regional gravity model IMOSAGA01C (Hosse et al. in Surv Geophys, 2014, this issue), were used as bases for the computation of stress anomalies on the top of the subducting oceanic Nazca plate and GPE relative to the base of the lithosphere. The geometries and physical parameters of the 3D density models were used for the computation of stresses and uplift rates in the dynamic modelling. The stress distributions, as derived from the static and dynamic modelling, reveal distinct positive anomalies of up to 80 MPa along the coastal Jurassic batholith belt. The anomalies correlate well with major seismicity in the shallow parts of the subduction system. Moreover, the pattern of stress distributions in the Andean convergent zone varies both along the north-south and west-east directions, suggesting that the continental fore-arc is highly segmented. Estimates of GPE show that the high Central Andes might be in a state of horizontal deviatoric tension. Models of gravity gradients from the Gravity field and steady-state Ocean Circulation Explorer (GOCE) satellite mission were used to compute Bouguer-like gradient anomalies at 8 km above sea level. The analysis suggests that data from GOCE add significant value to the

  18. Genetic parameters and genetic trends in the Chinese × European Tiameslan composite pig line. II. Genetic trends

    PubMed Central

    Zhang, Siqing; Bidanel, Jean-Pierre; Burlot, Thierry; Legault, Christian; Naveau, Jean

    2000-01-01

    The Tiameslan line was created between 1983 and 1985 by mating Meishan × Jiaxing crossbred Chinese boars with sows from the Laconie composite male line. The Tiameslan line has been selected since then on an index combining average backfat thickness (ABT) and days from 20 to 100 kg (DT). Direct and correlated responses to 11 years of selection were estimated using BLUP methodology applied to a multiple trait animal model. A total of 11 traits were considered, i.e.: ABT, DT, body weight at 4 (W4w), 8 (W8w) and 22 (W22w) weeks of age, teat number (TEAT), number of good teats (GTEAT), total number of piglets born (TNB), born alive (NBA) and weaned (NW) per litter, and birth to weaning survival rate (SURV). Performance data from a total of 4 881 males and 4 799 females from 1 341 litters were analysed. The models included both direct and maternal effects for ABT, W4w and W8w. Male and female performances were considered as different traits for W22w, DT and ABT. Genetic parameters estimated in another paper (Zhang et al., Genet. Sel. Evol. 32 (2000) 41-56) were used to perform the analyses. Favourable phenotypic (ΔP) and direct genetic trends (ΔGd) were obtained for post-weaning growth traits and ABT. Trends for maternal effects were limited. Phenotypic and genetic trends were larger in females than in males for ABT (e.g. ΔGd = -0.48 vs. -0.38 mm/year), were larger in males for W22w (ΔGd = 0.90 vs. 0.58 kg/year) and were similar in both sexes for DT (ΔGd = -0.54 vs. -0.55 day/year). Phenotypic and genetic trends were slightly favourable for W4w, W8w, TEAT and GTEAT and close to zero for reproductive traits. PMID:14736407

  19. Reduced expression of IQGAP2 and higher expression of IQGAP3 correlates with poor prognosis in cancers

    PubMed Central

    Kumar, Dinesh; Hassan, Md. Khurshidul; Pattnaik, Niharika; Mohapatra, Nachiketa

    2017-01-01

    IQGAPs is a family of proteins which comprises three members, in humans. The expression pattern and role of IQGAP1 has been well established in many cancers, whereas those of IQGAP2 and IQGAP3, have mostly remained unexplored. We used available large datasets, to explore the pan-cancer status of these two genes in-silico. Here we have analysed their mRNA expression and correlation with survivability in eight different cancers, including lung, breast, gastric, brain, colorectal, prostate, liver and kidney cancers and, their subtypes. The mRNA expression of IQGAP2 and IQGAP3 in individual cancers were analysed in two different publicly available databases viz. Oncomine and TCGA. The prognostic value of these genes in lung, breast and gastric cancer was analysed using Kaplan-Meier Plotter database, whereas for brain, colorectal, liver, prostate and kidney cancers, SurvExpress database was used. These results were validated by immunohistochemistry in cancer tissues (stomach, prostate, brain, colorectal). Moreover, we did IQGAP2 and IQGAP3 genomic alteration and, promoter methylation analysis using cBioportal and Wanderer web tool, respectively. Most of the cancer types (lung, breast, prostate, brain, gastric, liver, kidney and colorectal) showed increased IQGAP3 mRNA expression. In contrast, the IQGAP2 transcript levels were reduced across different cancers viz. lung, breast, gastric, liver, kidney and colorectal cancer. IQGAP2 expression correlated positively with survivability, on the contrary, IQGAP3 expression levels correlated inversely with survivability, in most of the cancers. Collectively, enhanced IQGAP3 and reduced IQGAP2 levels were frequently observed in multiple cancers with the former predicting poor survivability and the later opposite. Methylation pattern was significantly altered in most of the cancer types. We found copy no. variation and mutations in specific cancers, for IQGAP2 and IQGAP3. Our in-vivo (IHC) data confirmed the in-silico findings

  20. Reduced expression of IQGAP2 and higher expression of IQGAP3 correlates with poor prognosis in cancers.

    PubMed

    Kumar, Dinesh; Hassan, Md Khurshidul; Pattnaik, Niharika; Mohapatra, Nachiketa; Dixit, Manjusha

    2017-01-01

    IQGAPs is a family of proteins which comprises three members, in humans. The expression pattern and role of IQGAP1 has been well established in many cancers, whereas those of IQGAP2 and IQGAP3, have mostly remained unexplored. We used available large datasets, to explore the pan-cancer status of these two genes in-silico. Here we have analysed their mRNA expression and correlation with survivability in eight different cancers, including lung, breast, gastric, brain, colorectal, prostate, liver and kidney cancers and, their subtypes. The mRNA expression of IQGAP2 and IQGAP3 in individual cancers were analysed in two different publicly available databases viz. Oncomine and TCGA. The prognostic value of these genes in lung, breast and gastric cancer was analysed using Kaplan-Meier Plotter database, whereas for brain, colorectal, liver, prostate and kidney cancers, SurvExpress database was used. These results were validated by immunohistochemistry in cancer tissues (stomach, prostate, brain, colorectal). Moreover, we did IQGAP2 and IQGAP3 genomic alteration and, promoter methylation analysis using cBioportal and Wanderer web tool, respectively. Most of the cancer types (lung, breast, prostate, brain, gastric, liver, kidney and colorectal) showed increased IQGAP3 mRNA expression. In contrast, the IQGAP2 transcript levels were reduced across different cancers viz. lung, breast, gastric, liver, kidney and colorectal cancer. IQGAP2 expression correlated positively with survivability, on the contrary, IQGAP3 expression levels correlated inversely with survivability, in most of the cancers. Collectively, enhanced IQGAP3 and reduced IQGAP2 levels were frequently observed in multiple cancers with the former predicting poor survivability and the later opposite. Methylation pattern was significantly altered in most of the cancer types. We found copy no. variation and mutations in specific cancers, for IQGAP2 and IQGAP3. Our in-vivo (IHC) data confirmed the in-silico findings

  1. Uncertainty in regional and zonal monthly mean downward surface irradiances from Edition 4.0 CERES Energy Balanced and Filled (EBAF) data product

    NASA Astrophysics Data System (ADS)

    Kato, S.; Rutan, D. A.; Rose, F. G.; Loeb, N. G.

    2017-12-01

    The surface of the Earth receives solar radiation (shortwave) and emission from the atmosphere (longwave). At a global and annual mean approximately 12% of solar radiation incident on the surface is reflected and the rest is absorbed by the surface. The surface emits radiation proportional to the forth power of the temperature. Although the uncertainty in global and annual mean surface irradiances is estimated in earlier studies (Zhang et al. 1995, 2004; L'Ecuyer et al. 2008; Stephens et al. 2012; Kato et al. 2012), only a few studies estimated the uncertainty in computed surface irradiances at smaller spatial and temporal scales (Zhang et al. 1995, 2004; Kato et al. 2012). We use surface observations at 46 buoys and 36 land sites and newly released the Edition 4.0 Clouds and the Earth's Radiant Energy System (CERES) Energy Balanced and Filled (EBAF)-surface data product to estimate the uncertainty in regional and zonal monthly mean downward shortwave and longwave surface irradiances. The root-mean-square difference of monthly mean computed and observed irradiances is used for the regional uncertainty. The uncertainty is separated into bias and spatially random components. The random component decreases when irradiances are averaged over a larger area, nearly inversely proportional to the number of surface observation sites. The presentation provides the uncertainty in the regional and zonal monthly mean downward surface irradiances over ocean and land. ReferencesKato, S. and N.G.Loeb, D. A.Rutan, F. G. Rose, S. Sun-Mack,W.F.Miller, and Y. Chen, 2012. Surv. Geophys., 33, 395-412, doi:10.1007/s10712-012-9179-x. L'Ecuyer, T. S., N. B. Wood, T. Haladay, G. L. Stephens, and P. W. Stackhouse Jr., 2008, J. Geophys. Res., 113, D00A15, doi:10.1029/2008JD009951. Stephens, G. L. and Coauthors, 2012, Nat. Geosci., 5, 691-696, doi:10.1038/ngeo1580. Zhang, Y., W. B. Rossow, A. A. Lacis, V. Oinas, and M. I. Mishchenko, 2004, J. Geophys. Res., 109, D19105, doi:10.1029/2003JD

  2. Effects of a flood pulse on exchange flows along a sinuous stream

    NASA Astrophysics Data System (ADS)

    Käser, D.; Brunner, P.; Renard, P.; Perrochet, P.; Schirmer, M.; Hunkeler, D.

    2012-04-01

    typically assume a straight channel. The discussion covers an evaluation of this work with respect to previous studies that considered the influence of sinuosity on interfacial exchange flows. It addresses the issue of steady vs. transient exchanges, which is of uppermost importance at the operational scale of river restoration schemes. Langbein WB, Leopold LB. 1966. River meanders - theory of minimum variance. U.S. Geol. Surv. Prof. Pap. 422-H: 15 p.

  3. Testing earthquake prediction algorithms: Statistically significant advance prediction of the largest earthquakes in the Circum-Pacific, 1992-1997

    USGS Publications Warehouse

    Kossobokov, V.G.; Romashkova, L.L.; Keilis-Borok, V. I.; Healy, J.H.

    1999-01-01

    Algorithms M8 and MSc (i.e., the Mendocino Scenario) were used in a real-time intermediate-term research prediction of the strongest earthquakes in the Circum-Pacific seismic belt. Predictions are made by M8 first. Then, the areas of alarm are reduced by MSc at the cost that some earthquakes are missed in the second approximation of prediction. In 1992-1997, five earthquakes of magnitude 8 and above occurred in the test area: all of them were predicted by M8 and MSc identified correctly the locations of four of them. The space-time volume of the alarms is 36% and 18%, correspondingly, when estimated with a normalized product measure of empirical distribution of epicenters and uniform time. The statistical significance of the achieved results is beyond 99% both for M8 and MSc. For magnitude 7.5 + , 10 out of 19 earthquakes were predicted by M8 in 40% and five were predicted by M8-MSc in 13% of the total volume considered. This implies a significance level of 81% for M8 and 92% for M8-MSc. The lower significance levels might result from a global change in seismic regime in 1993-1996, when the rate of the largest events has doubled and all of them become exclusively normal or reversed faults. The predictions are fully reproducible; the algorithms M8 and MSc in complete formal definitions were published before we started our experiment [Keilis-Borok, V.I., Kossobokov, V.G., 1990. Premonitory activation of seismic flow: Algorithm M8, Phys. Earth and Planet. Inter. 61, 73-83; Kossobokov, V.G., Keilis-Borok, V.I., Smith, S.W., 1990. Localization of intermediate-term earthquake prediction, J. Geophys. Res., 95, 19763-19772; Healy, J.H., Kossobokov, V.G., Dewey, J.W., 1992. A test to evaluate the earthquake prediction algorithm, M8. U.S. Geol. Surv. OFR 92-401]. M8 is available from the IASPEI Software Library [Healy, J.H., Keilis-Borok, V.I., Lee, W.H.K. (Eds.), 1997. Algorithms for Earthquake Statistics and Prediction, Vol. 6. IASPEI Software Library]. ?? 1999 Elsevier

  4. Contribution of thermal infrared images on the understanding of the subsurface/atmosphere exchanges on Earth.

    NASA Astrophysics Data System (ADS)

    Lopez, Teodolina; Antoine, Raphaël; Baratoux, David; Rabinowicz, Michel

    2017-04-01

    not the evaporation/condensation cycle. [1] Antoine et al. (2009). J. Volcanol. Geotherm. Res., 183(3-4), 228-1140. [2] Antoine et al. (2017). Geothermics, 65, 81-98. [3] Lopez et al. (2016). Surv. Geophys., 37 (2), 471-502.

  5. Constitutional von Hippel-Lindau (VHL) gene deletions detected in VHL families by fluorescence in situ hybridization.

    PubMed

    Pack, S D; Zbar, B; Pak, E; Ault, D O; Humphrey, J S; Pham, T; Hurley, K; Weil, R J; Park, W S; Kuzmin, I; Stolle, C; Glenn, G; Liotta, L A; Lerman, M I; Klausner, R D; Linehan, W M; Zhuang, Z

    1999-11-01

    von Hippel-Lindau (VHL) disease is an autosomal dominantly inherited cancer syndrome predisposing to a variety of tumor types that include retinal hemangioblastomas, hemangioblastomas of the central nervous system, renal cell carcinomas, pancreatic cysts and tumors, pheochromocytomas, endolymphatic sac tumors, and epididymal cystadenomas [W. M. Linehan et al., J. Am. Med. Assoc., 273: 564-570, 1995; E. A. Maher and W. G. Kaelin, Jr., Medicine (Baltimore), 76: 381-391, 1997; W. M. Linehan and R. D. Klausner, In: B. Vogelstein and K. Kinzler (eds.), The Genetic Basis of Human Cancer, pp. 455-473, McGraw-Hill, 1998]. The VHL gene was localized to chromosome 3p25-26 and cloned [F. Latif et al., Science (Washington DC), 260: 1317-1320, 1993]. Germline mutations in the VHL gene have been detected in the majority of VHL kindreds. The reported frequency of detection of VHL germline mutations has varied from 39 to 80% (J. M. Whaley et al., Am. J. Hum. Genet., 55: 1092-1102, 1994; Clinical Research Group for Japan, Hum. Mol. Genet., 4: 2233-2237, 1995; F. Chen et al., Hum. Mutat., 5: 66-75, 1995; E. R. Maher et al., J. Med. Genet., 33: 328-332, 1996; B. Zbar, Cancer Surv., 25: 219-232, 1995). Recently a quantitative Southern blotting procedure was found to improve this frequency (C. Stolle et al., Hum. Mutat., 12: 417-423, 1998). In the present study, we report the use of fluorescence in situ hybridization (FISH) as a method to detect and characterize VHL germline deletions. We reexamined a group of VHL patients shown previously by single-strand conformation and sequencing analysis not to harbor point mutations in the VHL locus. We found constitutional deletions in 29 of 30 VHL patients in this group using cosmid and P1 probes that cover the VHL locus. We then tested six phenotypically normal offspring from four of these VHL families: two were found to carry the deletion and the other four were deletion-free. In addition, germline mosaicism of the VHL gene was identified in

  6. Can we use only Grain Size Data for Paleo-Flow Reconstructions?

    NASA Astrophysics Data System (ADS)

    Perillo, M. M.; Pohl, F.; Eggenhuisen, J. T.; Fedele, J.; Hoyal, D. C. J. D.; Mohrig, D. C.

    2015-12-01

    velocity, and whether this inverted shear velocity is in accordance with the experimental flow conditions. Preliminary application of this method to outcrop work will be given. Bagnold, R. (1966), U. S. Geol. Surv. Prof. Pap., 422-I, 37 pp. Eastwood, E. N., G. Kocurek, D. Mohrig, and T. Swanson (2012), J. Geophys. Res., 117, F03035, doi:10.1029/2012JF002368.

  7. How do Kakortokites form? Additional evidence from the Ilimaussaq Complex, S. Greenland

    NASA Astrophysics Data System (ADS)

    Hunt, E. J.; Finch, A. A.; Donaldson, C. H.

    2012-04-01

    eudialyte. Then nepheline and alkali feldspar crystallised through multiple modes of nucleation, developing the characteristic layering. Geochemical trends described by Pfaff et al. (2008) support an open system replenishment model during the formation of layer 0, and potentially also layers +4 and +8. To further this work we intend to apply this combined approach to investigate the formation of individual layers, scaling these processes into a model for the development of the Ilímaussaq complex. Bohse et al. (1971). Rapport Grønlands Geologiske Undergesølgelse, 36, 43 pp. Konnerup-Madsen (2001). Geology Greenland Surv. Bull., 190, 159-166. Pfaff et al. (2008). Lithos, 106, 280-296.

  8. Comparing the topographic long profiles of gullies on Earth and Mars

    NASA Astrophysics Data System (ADS)

    Conway, Susan; Balme, Matthew; Murray, John; Towner, Martin

    2014-05-01

    Planet. Sci. Conf. 35, (2004),no. 1556. [6] C.H. Hugenholtz, Icarus, (2008), 197,65-72. [7] J.L. Dickson and J.W. Head, Icarus, (2009), 204,63-86. [8] C.J. Gallagher and M.R. Balme, Geol. Soc. Lond. Spec. Publ., (2011), 356,87-110. [9] J.T. Hack, US Geol. Surv. Prof. Pap., (1957), 294-B,45-97. [10] M.A. Kreslavsky, Workshop Martian Gullies, (2008),abs.#1301.

  9. Low-accommodation detrital apron alongside a basement uplift, Pennsylvanian of Midcontinent North America

    NASA Astrophysics Data System (ADS)

    Joeckel, R. M.; Nicklen, B. L.; Carlson, M. P.

    2007-04-01

    The northern end of the 650-km-long Nemaha Uplift (Nebraska and Kansas, USA) is an important example of basin-margin sedimentation in the North American Midcontinent. An apron of coarse, basal Pennsylvanian arkosic clastic sediments (BPC) was deposited on the flanks of the uplift while marine cyclothems were encroaching from the east. Small-scale fining-upward intervals, many with demonstrably erosional bases, dominate the BPC and are interpreted as overridingly fluvial in origin. Weak paleosols, desiccation cracks, and reddened intervals in the BPC record episodic subaerial exposure. Multiple, burrowed horizons and heterolithic strata of probable tidal origin and rare marine fossils also indicate episodic marine influence. The BPC appear to have been deposited as a thin apron of coalesced, alluvial fans and fan deltas. Deposition of the BPC occurred during the waning of uplift and subsequent quiescence. The comparative thinness and large-scale packaging of the BPC are compatible with the controlling effects of relict relief, regional subsidence, and eustasy, rather than ongoing, major vertical displacements along active faults. A strong autocyclic influence on sedimentation is evidenced by stacked fining-upward intervals of poorly-sorted conglomerates, sandstones, and sandy mudstones. Correlations demonstrate that the accumulation of the BPC took place over more than seven major sea-level cycles, beginning in Cherokee Group times (middle Moscovian/middle Pennsylvanian) and ending only when the eroded uplift was inundated and buried by marine cyclothems. On the basis of local correlations with marine cyclothems, and using black phosphatic shales (so-called "core shales" of Heckel, P.H., 1986. Sea-level surve for Pennsylvanian eustatic marine transgressive-regressive depositional cycles along Midcontinent outcrop belt, North America: Geology 14, 330-334., Heckel, P.H., 1994. Evaluation of evidence for glacio-eustatic control over marine Pennsylvanian cyclothems in

  10. Comprehensive Testing of ASL-Owned Accelerometers

    NASA Astrophysics Data System (ADS)

    Evans, J. R.; Hutt, C. R.; Ringler, A. T.; de la Torre, T.

    2011-12-01

    The Albuquerque Seismological Laboratory (ASL) of the U.S. Geological Survey (USGS) has undertaken detailed testing of several commercial, off-the-shelf accelerometers to characterize production-standard examples of each instrument. The models tested are the Geotech PA-23, Guralp CMG-5TC, Kinemetrics ES-T (Episensor), Nanometrics Titan (sensor only), and RefTek RT-147-01/3. All are ±4 g accelerometers excepting the CMG-5TC at ±2 g (self noise could be depressed relative to 4-g variant). For dynamic tests, all were recorded on Quanterra Q330 (24-bit) or Q330HR (26-bit) recorders; for static tests high-precision multimeters were used (generally Agilent 3458A 81/2-digit or 34401A 61/2-digit). We also used a translational shake table (Anorad LW10-18-P-E-A-A-B-0) to input controlled test motions. We performed the tests described by Hutt et al. (2010; U.S. Geol. Surv. Open File Rep., 2009-1295, http://pubs.usgs.gov/of/2009/1295/) for these strong-motion sensors (Section 7, Recommended Testing for Strong Motion Acceleration Sensors). These recommended tests result from a public/private effort called "GST2" (the second Guidelines for Seismometer Testing workshop) and represent a consensus of experts in government, academia, and industry (a secondary goal of this work is vetting the tests in this consensus document). The recommended accelerometer tests are: 7.1 Power Demand (Start-up and Steady-State) 7.2 Static Sensitivity, Offset, and Linearity 7.3 Frequency Response and Bandwidth 7.4 Clip Level 7.5 Self Noise and Operating Range 7.6 Distortion 7.7 Orientation (Case to Actual) and Orthogonally 7.8 Translational Cross-Axis Sensitivity 7.9 Temperature Effects (Sensitivity and Offset) 7.10 Power Supply Voltage and Voltage-Noise Effects (Offset and Sensitivity) 7.11 Double Integration (Band-Limited Displacement Square Wave) To the degree the tests and analyses have progressed at this writing, the results are generally good but have revealed a number of issues needing

  11. Reworked calcretes: their significance in the reconstruction of alluvial sequences (Permian and Triassic, Minorca, Balearic Islands, Spain)

    NASA Astrophysics Data System (ADS)

    Gómez-Gras, D.; Alonso-Zarza, A. M.

    2003-05-01

    The Permian and Triassic of Minorca (Balearic Islands) consists of a 670-m-thick, red, alluvial succession that includes in situ calcrete profiles and reworked calcrete material. In the Permian succession, the calcretes vary from laminar forms developed on the Carboniferous basement to weakly developed nodular calcretes in fluvial sediments. The palaeosols in the Triassic are mostly dolomitic, and the profiles reach up to Stage III of soil development (Spec. Pap.-Geol. Surv. Am. 203, (1995) 1). The clasts, formed through reworking of the palaeosol profiles, are about 0.5-10 cm across and include mosaics of calcite/dolomite crystals, brecciated clasts, rhizolith fragments, and aggregates of clay and/or silt. These clasts appear in three different types of deposits. Type 1 corresponds to lenticular bodies that fill small scour surfaces, and consists only of intraformational conglomerates. These deposits are interpreted as ephemeral channels and sheet-floods that represent the interfluvial drainage systems that captured only the precipitation falling on the alluvial plain. Type 2 includes sand dune 3-D bodies with flat bottoms and convex tops. These bodies are about 20 cm high and 2 m wide, and were formed by floodwaters that flowed down the levees of the major streams. Type 3 channel deposits contain reworked calcretes and extrabasinal clasts, which overlie erosive surfaces and are found in layers within cross-bedded sandstones and conglomerates. These are interpreted as channel-floor lag deposits of major channels that entered from distant uplands and drained the alluvial plain. Variations in the aggradation rates of the floodplain resulted in five different infill stages. In the lowstand to early transgressive interval, as in stages I (P1) and IV (B1), the fluvial deposits filled palaeovalleys; calcretes and reworked calcrete deposits were of difficult formation (apart from terraces) and preservation. Accommodation space was at its greatest in the transgressive

  12. The implications of Chang'e-3 VIS/NIR Imaging Spectrometer in-situ analysis data

    NASA Astrophysics Data System (ADS)

    Yao, Meijuan; Zhang, Hongbo; Su, Yan; Liu, Bin; Zhao, Shu; Xue, Xiping

    2015-04-01

    believe that at least the identification of the minerals gives us valuable imformation about the landing site. References: [1] Liu B. (2014). RAA, 14, 1578-1594. [2] Thiessen F. et al., (2014). Planetary and Space Science, 104, 244-252. [3]Yamamoto S. et al., (2010). Nat. Geosci. 3, 533-536. [4] Tong S. et al,. (2013). Icarus 222, 401-410. [5] Wilhelm D.E., and McCauley J.F. (1971). 1-703. U.S. Geol. Surv., Washington D.C. [6] Li C.L. et al., (2014). RAA, 14, 1514-1529. Acknowledgements: This work was supported by the CHANG'E-3 funding from Chinese Lunar Exploration Program, undertaken by the China National Space Administration (CNSA). This work is also supported by the NSFC program (41490633).

  13. Copernican tectonic activities in the northwestern Imbrium region of the Moon

    NASA Astrophysics Data System (ADS)

    Daket, Yuko; Yamaji, Atsushi; Sato, Katsushi

    2015-04-01

    area lasted until recently. Those young tectonic activities are too young to be explained by mascon loading hypothesis. Tectonism induced by global cooling or orbital evolution are possible origins for the young horizontal compression. However, they cannot explain the recent extension. Our study area is located in PKT region where the heat-producing elements are more abundant than surrounding areas. Therefore, regional cooling would be a reasonable explanation for the young extensional tectonics. References Ono, T., A. Kumamoto, H. Nakagawa, Y. Yamaguchi, S. Oshigami, A. Yamaji, T. Kobayashi, Y. Kasahara, and H. Oya, 2009, Science, 323, 909--912. Solomon, S.C. and Head, J.W., 1980, Rev. Geophys., 18, 107--141. Trask, N.J., 1971, Geological Survey Research, U.S. Geol. Surv. Prof. Pap. 750-D, D138--D144. Watters, T.R., M.S. Robinson, M.E. Banks, T. Tran, and B.W. Denevi, 2012, Nature Geosci., 5, 181--185.

  14. In search of the noble gas 3.52 Ga atmospheric signatures

    NASA Astrophysics Data System (ADS)

    Pujol, M.; Marty, B.; Philippot, P.

    2008-12-01

    nuclear reactions on Xe isotope production, barite from 30m shallower depth in the same core were analyzed. Variable excesses can be linked to spallogenic and cosmogenic reactions ([4] [5] [6]) which allow the primitive Xe isotopic signature to be isolated from subsequent secondary production. Models of the archaean atmospheric noble gas signature can thereby be compared with different theories on primitive atmospheric composition. [1] Staudacher T. Allègre C.J. (1982) EPSL 60, p 389-406 [2] Van Kranendonk MJ., Hickman A.H., Williams I.R. and Nijman W. (2001) Rec.-Geol. Surv. West. Aust. 2001/9, 134 [3] Foriel J., Philippot P., Rey P., Somogyi A., Banks D. and Ménez B. (2004) EPSL, 228, 451-463 [4]Srinivasan B. (1976) EPSL, 31, 129-141 [5]Charalambus S. (1971) Nuclear Physics, A166, 145 [6]Meshik A. P., Hohenberg C. M., Pravdivtseva O. V. and Kapusta Y. (2001) Phys. Rev., C 64, 035205-1 035205-6

  15. U-Pb ID-TIMS zircon ages of TTG gneisses of the Aravalli Craton of India

    NASA Astrophysics Data System (ADS)

    Chauhan, Hiredya; Saikia, Ashima; Kaulina, Tatiana; Bayanova, Tamara; Ahmad, Talat

    2015-04-01

    zircon types from UD-16 sample yield a U-Pb discordant age of 2680±30 Ma. Two zircon fractions from UD-17 sample show discordant 207Pb/206Pb ages of 2506 and 2577 Ma. Zircons in our samples have moderate to high U contents (180-770 ppm) with low Th/U ratios (0.2-0.5) in the sample UD-16, characteristic for magmatic zircons from TTG rocks. Thus the obtained age of 2680±30 Ma is interpreted as an age of magmatic crystallization of tonalites. Gopalan, K. et al., (1990): Precambrian Res., 48, 287-297. Ludwig, K.R. (1991): PBDAT program. US. Geol. Surv. Open-file report 88-542, 38 p. Ludwig, K. R. (2008): Isoplot/Ex, version 3.6, Berkeley Geochronology Center, Special Publication no. 4. Upadhyaya, R. et al., (1992): Current Sci., 62(2): 87-92. Wiedenbeck, M. et al., (1996): Chem Geol. 129: 325-340.

  16. Could borate have played a role in the RNA World?

    NASA Astrophysics Data System (ADS)

    Grew, E. S.; Bada, J. L.; Hazen, R. M.

    2012-12-01

    Hills, Australia, have been cited as evidence for the presence of granitic (s. l.) "protocontinental" crust by 4.3 Ga (Ushikuba et al. 2008 doi:10.1016/j.epsl.2008.05.032; Valley et al. 2010 Rec Geol Surv W Aust, 5-7), but the existence of conventional plate tectonics prior to 3.8 Ga remains controversial. Chaussidon & Appel (1997 Chem Geol 136, 171-180) concluded that boron isotope compositions (δ11B) of tourmaline from Isua volcaniclastic rocks provide no evidence for changes of δ11B in the mantle or continental crust between now and 3.8 Ga, whereas the very light B (δ11B = -20‰) in tourmaline from Isua metachert could indicate that seawater δ11B was at least 10‰ less at 3.8 Ga than now and that there was proportionally less B in sediments at 3.8 Ga, i.e., fractionation of B between depleted mantle, oceans, continental crust and oceanic crust was still in progress (Chaussidon & Albarède 1992, EPSL 108, 229-241). If fractionation and outgassing of boron had not proceeded very far during the RNA World, neither of the proposed scenarios of borate enrichment is plausible, particularly in the absence of a conventional plate tectonics regime.

  17. Mont Terri Underground Rock Laboratory, Switzerland-Research Program And Key Results

    NASA Astrophysics Data System (ADS)

    Nussbaum, C. O.; Bossart, P. J.

    2012-12-01

    scenarios and v) Evaluation of diffusion and retention parameters for long-lived radionuclides. Experiments related to repository-induced perturbations are focused on: i) Influence of rock liner on the disposal system and the buffering potential of the host rock; ii) Self-sealing processes in the excavation damaged zone; iii) Hydro-mechanical coupled processes (e.g. stress redistributions and pore pressure evolution during excavation); iv) Thermo-hydro-mechanical-chemical coupled processes (e.g. heating of bentonite and host rock) and v) Gas-induced transport of radionuclides in porewater and along interfaces in the engineered barrier system. A third research direction is to demonstrate the feasibility of repository construction and long-term safety after repository closure. Demonstration experiments can contribute to improving the reliability of the scientific basis for the safety assessment of future geological repositories, particularly if they are performed on a large scale and with a long duration. These experiments include the construction and installation of engineered barriers on a 1:1 scale: i) Horizontal emplacement of canisters; ii) Evaluation of the corrosion of container materials; repository re-saturation; iii) Sealing of boreholes and repository access tunnels and iv) Long-term monitoring of the repository. References Bossart, P. & Thury, M. (2008): Mont Terri Rock Laboratory. Project, Programme 1996 to 2007 and Results. - Rep. Swiss Geol. Surv. 3.

  18. P and S automatic picks for 3D earthquake tomography in NE Italy

    NASA Astrophysics Data System (ADS)

    Lovisa, L.; Bragato, P.; Gentili, S.

    2006-12-01

    quantity of recordings must by quickly analyzed to provide some preliminary results (e.g., to decide about further data acquisition when using temporary networks) or when a sort of "real-time tomography" is required (e.g., continuous imaging of volcanoes during their activity). References Evans J.R., Eberhart-Phillips D., and Thurber C.H. (1994). User's manual for simulps12 for imaging vp and vp/vs: a derivative of the Thurber tomographic inversion simul3 for local earthquakes locations and explosions, U.S.Geol. Surv. Open File Report, 7 pp. Gentile, G. F., Bressan, G., Burlini, L., De Franco, R., 2000, Three - dimensional Vp and Vp/Vs models of the upper crust in the Friuli area (Northeastern Italy)., Geophys. Journ. Int., 141, 457-478. Gentili S. and Bragato P. L., 2006,"A neural-tree-based system for automatic location of earthquakes in Northeastern Italy" Journal of Seismology, Volume 10, Number 1, pp.73-89. Michelini, A., Mcevilly, T. V., 1991, "Seismological studies at Parkfield; I, Simultaneous inversion for velocity structure and hypocenters using cubic B-splines parameterization.", Bulletin of the Seismological Society of America, 81, 2, 524-552.

  19. Self-Directed Engagement with a Mobile App (Sinasprite) and Its Effects on Confidence in Coping Skills, Depression, and Anxiety: Retrospective Longitudinal Study.

    PubMed

    Silva Almodovar, Armando; Surve, Swatee; Axon, David Rhys; Cooper, David; Nahata, Milap C

    2018-03-16

    time, concomitant counseling, and psychotropic prescription medication use on mental health status. Thirty-four users were eligible for inclusion in the analysis. Users were predominantly female, white, married, and college educated. At baseline, 35% (12/34) of respondents reported the use of individual/group counseling, and 38% (19/34) reported using prescription medications for their mental health. The median user completed 5.7 (interquartile range 2.7-14.1) trackable activities per week. Statistically significant improvements using a Wilcoxon signed-ranked test were observed in the PHQ-8 (P<.001), GAD-7 (P=.002), and CSE (P<.001) questionnaire scores. A strong positive correlation between improvement in the GAD-7 and CSE questionnaire scores (ρ=.572, P=.001, n=28) was observed. The mixed-effects repeated-measures regression model revealed a statistically significant effect of time on improvements in the PHQ-8 (P<.001), GAD-7 (P=.007), and CSE (P=.001). This 6-week retrospective study showed that self-directed use of the mobile app, Sinasprite, resulted in significant improvements in self-reported questionnaire scores reflecting depression, anxiety, and confidence in coping skills. ©Armando Silva Almodovar, Swatee Surve, David Rhys Axon, David Cooper, Milap C Nahata. Originally published in JMIR Mhealth and Uhealth (http://mhealth.jmir.org), 16.03.2018.

  20. Variations in Pb concentrations and Pb-isotope ratios in soils collected along an east-west transect across the United States

    NASA Astrophysics Data System (ADS)

    Smith, David; Woodruff, Laurel; Reimann, Clemens; Flem, Belinda

    2014-05-01

    feldspar content for the same 2500-km portion of the transect from east-central Colorado to the Atlantic coast that shows steadily increasing precipitation. No such correlation exists in the soil C horizon. The data demonstrate the importance of climate and weathering on both Pb concentration and 206Pb/207Pb isotope ratios in soil samples and natural shifts thereof in the soil profile during soil-forming processes. The results of this study demonstrate that often none of above two requirements for the use of Pb isotopes in environmental sciences will be met. REFERENCES Smith, D.B., Cannon, W.F., Woodruff, L.G., Garrett, R.G., Klassen, R., Kilburn, J.E., Horton, J.D., King, H.D., Goldhaber, M.B., Morrison, J.M., 2005. Major- and trace-element concentrations in soils from two continental-scale transects of the United States and Canada. U.S. Geol. Surv. Open-File Rep. 2005-1253.

  1. Towards understanding the nature of any relationship between Solar Activity and Cosmic Rays with thunderstorm activity and lightning discharge

    NASA Astrophysics Data System (ADS)

    O'Regan, J.; Muller, J.-P.; Matthews, S.

    2012-04-01

    both sign and significance over small geographic distances, similar to previous results [3,4,6], highlighting the complexity of the atmospheric processes contributing to the mechanism of thunderstorm generation and lightning discharge. We find correlations are generally more significant over larger timescales, as daily meteorological variability is smoothened out, suggesting a role for changing Solar activity levels in influencing thunderstorm development and onset of lightning discharge. Comparisons of small-scale correlation results to planetary wave patterns suggests an influence over the correlations of lightning activity to the above indices, as proposed by Schlegel et al. [6], and previously suggested by the results of Fritz [3] and Brooks [4]. Our results show agreement with Schlegel et al. [6] for the same region over Germany, but are in disagreement with their results for Austria. This lends support to the idea of the theory of planetary waves influence over correlation signs and significance across short geographic distances, as discussed by Schlegel et al. [6]. Acknowledgement: The authors wish to thank the World Wide Lightning Location Network (http://wwlln.net), a collaboration among over 50 universities and institutions (including MSSL) for providing the lightning location data used in this paper. [1] Ermakov, V.I. and Stozhkov, Yu.I., 2003. Cosmic rays in the mechanism of thundercloud production. 28th International Cosmic Ray Conference, pp. 4157-4160. [2] Kirkby, J., 2007. Cosmic rays and climate. Surv Geophys, vol. 28 (5-6) pp. 333-375. [3] Fritz, H., 1878. Die wichtigsten periodischen Erscheinungen der Meteorologie und Kosmologie. Natuurkundige Verhandelingen van de Hollandsche Maatschappij der Wetenschappen te Haarlem, Deel III, Haarlem. [4] Brooks, C.E.P., 1934. The variation of the annual frequency of thunderstorms in relation to sunspots. Quarterly Journal of the Royal Meteorological Society 60, 153-165. [5] Stringfellow, M.F., 1974. Lightning

  2. Space Shuttle Radar Images of Terrestrial Impact Structures: SIR-C/X-SAR

    NASA Astrophysics Data System (ADS)

    McHone, J. F.; Blumberg, D. G.; Greeley, R.; Underwood, J. R., Jr.

    1995-09-01

    ; 133 degrees 09'E; largest ca.150 m dia) Although quite small, Henbury crater field [8] appears distinctly radar bright on survey -qualilty imagery. Strong radar backscatter may be due to a combination of impact-disrupted sedimentary horizons and of soil dielectrical properties altered by a significant meteoritic iron content [9]. References: [1] Garvin J. B. and Schnetzler C. C. (1994) GSA Spec. Pap. 293, 249-257. [2] Dietz R. S. and McHone J. F. (1979) Apollo Soyuz Test Proj. Summary Sci. Rept. (2) NASA SP-412, 183-192. [3] Roland N. W. (1976) Geol. Jahrb., Reihe A, 33, 117-131. [4] Becq-Giraudon J. F. et al. (1992) Comptes Rendus de l'Academ. des Sciences, Ser.2, 315, 83-88. [5] Grieve R. A. F. and Therriault A. M. (1995) LPS XXVI, 515-516. [6] Lambert P. et al. (1980) Meteoritics, 15, 157-159. [7] Harms et al. (1980) Nature, 286, 704-706. [8] Milton D. J. (1968) Geol. Surv. Prof. Pap. 599-C, C1-C16. [9] Hodge P. W. and Wright F. W. (1971) JGR, 76, 3880-3895.

  3. Major water-related episodes on the lowlands of Mars

    NASA Astrophysics Data System (ADS)

    Fairén, A. G.; Dohm, J. M.; Baker, V. R.

    2003-04-01

    sheets and the hydrological cycle on Mars. Nature, 352, 589--594, 1991. Baker, V. R.: Water and the martian landscape. Nature, 412, 228--236, 2001. Carr, M. H.: Elevations of water-worn features on Mars: Implications for circulation of groundwater, J. Geophys. Res., 107, 5131, doi:10.1029/2002JE001845, 2002. Dohm, J.M., et al.: Ancient drainage basin of the Tharsis region, Mars: Potential source for outflow channel systems and putative oceans or paleolakes. J. Geophys. Res., 106, 32 943--32 958, 2001. Edgett, K.S. and Parker, T.J.: Water on early Mars: Possible subaqueous sedimentary deposits covering ancient cratered terrain in western Arabia and Sinus Meridani. Geophys. Res. Lett., 24, 2897--2900, 1997. Farmer, J.D. and Des Marais, D.J.: Exploring for a record of ancient martian life. J. Geophys. Res., 104, 26 977--26 995, 1999. Fairén, A.G. and de Pablo, M.A.: An evolutionary timescale for the water on Mars. Lunar Planet. Sci. Conf., XXXIII, #1013 (abstract) [CD-ROM], 2002. Head, J.W., et al.: Possible ancient oceans on Mars: Evidence from Mars Orbiter laser altimeter data. Science, 286, 2134--2137, 1999. Parker, T.J., et al.: Coastal geomorphology of the Martian northern plains. J. Geophys. Res., 98, 11 061--11 078, 1993. Scott, D.H., et al.: Map of Mars showing channels and possible paleolake basins. U.S. Geol. Surv. Misc. Invest. Ser. MAP I-2461, 1995. Skinner, J.A. and Tanaka, K.L.: Long-lived hydrovolcanism of Elysium. Eos. Trans. AGU 82(47), Fall Meet. Suppl., Abstract P31B-07, 2001. Zuber, M. T., et al.: Internal structure and early thermal evolution of Mars from Mars Global Surveyor topography and gravity. Science, 287, 1788--1793, 2000.

  4. GIS-based landslide hazard evaluation at the regional scale: some critical points in the permanent displacement approach for seismically-induced landslide maps

    NASA Astrophysics Data System (ADS)

    Vessia, Giovanna; Parise, Mario

    2013-04-01

    local practitioners. Seismically-induced landslide hazard maps have been drawn using the aforementioned three expressions. The preliminary results show Quaternary deposits (including alluvium deposits, slope wash, and terrace deposits) as the lithologies most affected by permanent displacement. Moreover, Towsley and Modelo formations, that are stiffer than the previous rock units, and consist mostly of shales, siltstones and subordinate sandstones, show high hazard value where the slopes increase. The relevant role of local slope in permanent displacement extent is evident where lithologies are characterized by both cohesive and frictional resistance components. Finally, a comparison among the maps produced by using the three expressions for permanent displacements is discussed. References Ambraseys N.N. and Menu J.M. (1988) Earthquake-induced ground displacements. Earthquake Engineering and Structural Dynamics, 16: 985-1006. Harp E.L. and Jibson R.W. (1995) Inventory of landslides triggered by the 1994 Northridge, California earthquake. US Geol. Surv. Open-File Rep. 95-213 17 pp. Jibson R. (2007) Regression models for estimating coseismic landslide displacement. Engineering Geology, 91: 209-218. Luzi L. and Pergalani F. (2000) A correlation between slope failures and accelerometric parameters: the 26 September 1997 earthquake (Umbria-Marche, Italy). Soil Dynamics and Earthquake Engineering, 20: 301-313. Newmark N.M. (1965) Effects of earthquakes on dams and embankments. Geotechnique 965, 15(2): 139-160. Parise M. and Jibson R.W. (2000) A seismic landslide susceptibility rating of geologic units based on analysis of characteristics of landslides triggered by the 17 January, 1994 Northridge, California earthquake. Engineering Geology, 58: 251-270. Romeo R. (2000) Seismically induced landslide displacements: a predictive model. Engineering Geology, 58: 337-351.

  5. Lyapunov analysis: from dynamical systems theory to applications

    NASA Astrophysics Data System (ADS)

    Cencini, Massimo; Ginelli, Francesco

    2013-06-01

    . Mon. 82 985 [15] Feigenbaum M J 1978 J. Stat. Phys. 19 25 [16] Oseledets V I 1968 Trans. Moscow Math. Soc. 19 197 [17] Birkhoff G D 1931 Proc. Natl Acad. Sci. USA 17 656 [18] von Neumann J 1932 Proc. Natl Acad. Sci. USA 18 70 [19] Krylov N S 1979 Works on the Foundations of Statistical Physics (Princeton, NJ: Princeton University Press) [20] Anosov D V and Sinai Y G 1967 Russ. Math. Surv. 22 103 [21] Pesin Y B 1976 Sov. Math. Dokl. 17 196 [22] Sinai Y G 1972 Russ. Math. Surv. 27 21 [23] Ruelle D 1979 Publ. Math. l'IHES 50 27 [24] Bowen R 1975 Equilibrium States and the Ergodic Theory of Anosov Diffeomorphisms (Lecture Notes in Mathematics vol 470) (Berlin: Springer) [25] Bowen R and Ruelle D 1975 Invent. Math. 29 181 [26] Shimada I and Nagashima T 1979 Prog. Theor. Phys. 61 1605 [27] Benettin G, Galgani L, Giorgilli A and Strelcyn J M 1980 Meccanica 15 9 [28] Grassberger P and Procaccia I 1984 Physica D 13 34 [29] Wolf A, Swift J B, Swinney H L and Vastano J A 1985 Physica D 16 285 [30] Takens F 1981 Detecting strange attractors in turbulence Dynamical Systems and Turbulence (Lecture Notes in Mathematics vol 898) ed D A Rand and L S Young (Berlin: Springer) p 366 [31] Eckmann J P and Ruelle D 1985 Rev. Mod. Phys. 57 617 [32] Legras B and Vautard R 1996 A guide to Lyapunov vectors Predictability (ECWF Seminar vol 1) ed T Palmer (Reading: ECMWF) p 141 3Prior to their publication in the West at the end of the 1970s, Krylov's results appeared in his PhD dissertation, published posthumously in 1950.

  6. Genesis Hypotheses Concerning Putative Rootless Cone Groups in Isidis Planitia, Mars

    NASA Astrophysics Data System (ADS)

    Pithawala, T. M.; Ghent, R. R.

    2008-09-01

    the non-uniform development of sills [11], such that daughter bodies of a parent sill can vary in size and vertical and horizontal distribution, and thus result in different abutment relationships, causing varying surface manifestations of the hybrid sill tips. A combination of both models is also a likely candidate for the genesis of TPT in Isidis. We are continuing to investigate the details of the two models by analyzing additional datasets and terrestrial analogues. References [1] Kargel et al. (1995) JGR-E, 100, 5351-5368. [2] Pomerantz, W.J and Head III, J.W (2003) LPSC XXXXIII, Abstract 1277. [3] Chapman M. (1994) Icarus, 109(2), 393-406. [4] Head III, J.W and Marchant (2003) LPSC XXXXIII, Abstract 1247. [5] Scott and Underwood (1991) Proceedings of Lunar Planet. Sci, 21, 627-634. [6] Hiesinger, H. and Head III, J.W (2003) 6th Intl Conf. on Mars, Abstract 3061. [7] Ivanov, M.A and Head III, J.W (2003) JGR-E, 108, E6. [8] Greeley, R. and Guest, J.E (1987), US Geol. Surv. Misc. Invest. Ser., Map I-1802-B. [9] Cartwright, J. and Hansen, D.M (2006) Geology 34(11), 929-932. [10] Hansen, D.M and Cartwright, J. (2006) Journal Geol. Soc. London 163 (3), 509-523. [11] Thomson, K., and Hutton, D. (2004) Bull Volcanology, 66, 364-375.

  7. Concentric Crater Fill in Utopia Planitia: Timing and Transitions Between Glacial and Periglacial Processes.

    NASA Astrophysics Data System (ADS)

    Levy, J.; Head, J.

    2008-09-01

    those observed on flowing debris-covered glaciers on Earth [20]. Inversion of polygon topography at polygon margins due to differential sublimation would result in the formation of raised mounds and chains of mounds, some of which may preserve the original surface trough (e.g., the axial furrows observed in some BT mound chains). Deposition of thin layers of low-albedo BTC material on ice-cored FBT mounds could result in enhanced sublimation of residual icecores [21], leading to collapse of FBT mounds, and generating HBT features at contacts between BT and BTC units. References. [1] Squyres, S. (1979) JGR, 84, 8087-8096. [2] Squyres, S. & Carr, M. (1986) Sci., 231, 249-252. [3] Lucchita, B. (1984) JGR, 89, 409-418. [4] Zimbelman, J. et al. (1989) LPSC19, 397-407. [5] Mangold, N. & Allemand, P. (2001) GRL, 28, 3407-3410. [6] Head, J. et al. (2006) GRL, doi: 10.1029/2005GL024360. [7] Levy, J. et al. (2007) JGR, doi: 10.1029/ 2006JE002852. [8] Holt, J. et al. (2008) LPSC39, #2441. [9] Plaut, J. et al. (2008) LPSC39, #1391. [9] Dobrea, N. et al. (2007) 7th Mars, #3358. [10] Levy, J. et al. (2008) LPSC39, #1171, [11] Mangold, N. (2003) JGR, doi:10.1029/2002JE001885. [12] Mustard, J. et al. (2001) Nature, 412, 411-414. [13] Head, J. et al. (2003) Nature, 426, 797-802. [14] Kreslavsky, M. & Head, J. (2006) M&PS, 41, 1633-1646. [15] Marchant, D. et al. (2002), GSAB, 114, 718-730. [16] Milliken, R. et al. (2003) JGR, doi: 10.1029/2002JE002005. [17] Pewe, T. (1959) Am. J. Sci., 257, 545-552. [18] Root, J. (1975) Geol. Surv. Can., 75-1B, 181. [19] Garvin, J. et al. (2002) LPSC33, #1255. [20] Levy, J. et al. (2006) Ant. Sci., doi: 10.1017/ S0954102006000435. [21] Williams, K. et al. (2008) Icarus, In Press.