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Sample records for large-scale chemical modification

  1. A large-scale chemical modification screen identifies design rules to generate siRNAs with high activity, high stability and low toxicity

    PubMed Central

    Bramsen, Jesper B.; Laursen, Maria B.; Nielsen, Anne F.; Hansen, Thomas B.; Bus, Claus; Langkjær, Niels; Babu, B. Ravindra; Højland, Torben; Abramov, Mikhail; Van Aerschot, Arthur; Odadzic, Dalibor; Smicius, Romualdas; Haas, Jens; Andree, Cordula; Barman, Jharna; Wenska, Malgorzata; Srivastava, Puneet; Zhou, Chuanzheng; Honcharenko, Dmytro; Hess, Simone; Müller, Elke; Bobkov, Georgii V.; Mikhailov, Sergey N.; Fava, Eugenio; Meyer, Thomas F.; Chattopadhyaya, Jyoti; Zerial, Marino; Engels, Joachim W.; Herdewijn, Piet; Wengel, Jesper; Kjems, Jørgen

    2009-01-01

    The use of chemically synthesized short interfering RNAs (siRNAs) is currently the method of choice to manipulate gene expression in mammalian cell culture, yet improvements of siRNA design is expectably required for successful application in vivo. Several studies have aimed at improving siRNA performance through the introduction of chemical modifications but a direct comparison of these results is difficult. We have directly compared the effect of 21 types of chemical modifications on siRNA activity and toxicity in a total of 2160 siRNA duplexes. We demonstrate that siRNA activity is primarily enhanced by favouring the incorporation of the intended antisense strand during RNA-induced silencing complex (RISC) loading by modulation of siRNA thermodynamic asymmetry and engineering of siRNA 3′-overhangs. Collectively, our results provide unique insights into the tolerance for chemical modifications and provide a simple guide to successful chemical modification of siRNAs with improved activity, stability and low toxicity. PMID:19282453

  2. Just enough inflation: power spectrum modifications at large scales

    SciTech Connect

    Cicoli, Michele; Downes, Sean; Dutta, Bhaskar; Pedro, Francisco G.; Westphal, Alexander E-mail: ssdownes@phys.ntu.edu.tw E-mail: francisco.pedro@desy.de

    2014-12-01

    We show that models of 'just enough' inflation, where the slow-roll evolution lasted only 50- 60 e-foldings, feature modifications of the CMB power spectrum at large angular scales. We perform a systematic analytic analysis in the limit of a sudden transition between any possible non-slow-roll background evolution and the final stage of slow-roll inflation. We find a high degree of universality since most common backgrounds like fast-roll evolution, matter or radiation-dominance give rise to a power loss at large angular scales and a peak together with an oscillatory behaviour at scales around the value of the Hubble parameter at the beginning of slow-roll inflation. Depending on the value of the equation of state parameter, different pre-inflationary epochs lead instead to an enhancement of power at low ℓ, and so seem disfavoured by recent observational hints for a lack of CMB power at ℓ∼< 40. We also comment on the importance of initial conditions and the possibility to have multiple pre-inflationary stages.

  3. Metal ion implantation for large scale surface modification

    SciTech Connect

    Brown, I.G.

    1992-10-01

    Intense energetic beams of metal ions can be produced by using a metal vapor vacuum arc as the plasma discharge from which the ion beam is formed. We have developed a number of ion sources of this kind and have built a metal ion implantation facility which can produce repetitively pulsed ion beams with mean ion energy up to several hundred key, pulsed beam current of more than an ampere, and time averaged current of several tens of milliamperes delivered onto a downstream target. We've also done some preliminary work on scaling up this technology to very large size. For example, a 50-cm diameter (2000 cm[sup 2]) set of beam formation electrodes was used to produce a pulsed titanium beam with ion current over 7 amperes at a mean ion energy of 100 key. Separately, a dc embodiment has been used to produce a dc titanium ion beam with current over 600 mA, power supply limited in this work, and up to 6 amperes of dc plasma ion current was maintained for over an hour. In a related program we've developed a plasma immersion method for applying thin metallic and compound films in which the added species is atomically mixed to the substrate. By adding a gas flow to the process, well-bonded compound films can also be formed; metallic films and multilayers as well as oxides and nitrides with mixed transition zones some hundreds of angstroms thick have been synthesized. Here we outline these parallel metal-plasma-based research programs and describe the hardware that we've developed and some of the surface modification research that we've done with it.

  4. Large Scale Chemical Cross-linking Mass Spectrometry Perspectives

    PubMed Central

    Zybailov, Boris L.; Glazko, Galina V.; Jaiswal, Mihir; Raney, Kevin D.

    2014-01-01

    The spectacular heterogeneity of a complex protein mixture from biological samples becomes even more difficult to tackle when one’s attention is shifted towards different protein complex topologies, transient interactions, or localization of PPIs. Meticulous protein-by-protein affinity pull-downs and yeast-two-hybrid screens are the two approaches currently used to decipher proteome-wide interaction networks. Another method is to employ chemical cross-linking, which gives not only identities of interactors, but could also provide information on the sites of interactions and interaction interfaces. Despite significant advances in mass spectrometry instrumentation over the last decade, mapping Protein-Protein Interactions (PPIs) using chemical cross-linking remains time consuming and requires substantial expertise, even in the simplest of systems. While robust methodologies and software exist for the analysis of binary PPIs and also for the single protein structure refinement using cross-linking-derived constraints, undertaking a proteome-wide cross-linking study is highly complex. Difficulties include i) identifying cross-linkers of the right length and selectivity that could capture interactions of interest; ii) enrichment of the cross-linked species; iii) identification and validation of the cross-linked peptides and cross-linked sites. In this review we examine existing literature aimed at the large-scale protein cross-linking and discuss possible paths for improvement. We also discuss short-length cross-linkers of broad specificity such as formaldehyde and diazirine-based photo-cross-linkers. These cross-linkers could potentially capture many types of interactions, without strict requirement for a particular amino-acid to be present at a given protein-protein interface. How these shortlength, broad specificity cross-linkers be applied to proteome-wide studies? We will suggest specific advances in methodology, instrumentation and software that are needed to

  5. Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry*

    PubMed Central

    Olsen, Jesper V.; Mann, Matthias

    2013-01-01

    Cellular function can be controlled through the gene expression program, but often protein post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key functional roles of specific modification events—for instance, during the cell cycle—have been known for decades, but only in the past 10 years has mass-spectrometry-(MS)-based proteomics begun to reveal the true extent of the PTM universe. In this overview for the special PTM issue of Molecular and Cellular Proteomics, we take stock of where MS-based proteomics stands in the large-scale analysis of protein modifications. For many PTMs, including phosphorylation, ubiquitination, glycosylation, and acetylation, tens of thousands of sites can now be confidently identified and localized in the sequence of the protein. The quantification of PTM levels between different cellular states is likewise established, with label-free methods showing particular promise. It is also becoming possible to determine the absolute occupancy or stoichiometry of PTM sites on a large scale. Powerful software for the bioinformatic analysis of thousands of PTM sites has been developed. However, a complete inventory of sites has not been established for any PTM, and this situation will persist into the foreseeable future. Furthermore, although PTM coverage by MS-based methods is impressive, it still needs to be improved, especially in tissues and in clinically relevant systems. The central challenge for the field is to develop streamlined methods for determining biological functions for the myriad of modifications now known to exist. PMID:24187339

  6. Mining Large Scale Tandem Mass Spectrometry Data for Protein Modifications Using Spectral Libraries.

    PubMed

    Horlacher, Oliver; Lisacek, Frederique; Müller, Markus

    2016-03-01

    Experimental improvements in post-translational modification (PTM) detection by tandem mass spectrometry (MS/MS) has allowed the identification of vast numbers of PTMs. Open modification searches (OMSs) of MS/MS data, which do not require prior knowledge of the modifications present in the sample, further increased the diversity of detected PTMs. Despite much effort, there is still a lack of functional annotation of PTMs. One possibility to narrow the annotation gap is to mine MS/MS data deposited in public repositories and to correlate the PTM presence with biological meta-information attached to the data. Since the data volume can be quite substantial and contain tens of millions of MS/MS spectra, the data mining tools must be able to cope with big data. Here, we present two tools, Liberator and MzMod, which are built using the MzJava class library and the Apache Spark large scale computing framework. Liberator builds large MS/MS spectrum libraries, and MzMod searches them in an OMS mode. We applied these tools to a recently published set of 25 million spectra from 30 human tissues and present tissue specific PTMs. We also compared the results to the ones obtained with the OMS tool MODa and the search engine X!Tandem. PMID:26653734

  7. Reversible large-scale modification of cortical networks during neuroprosthetic control.

    PubMed

    Ganguly, Karunesh; Dimitrov, Dragan F; Wallis, Jonathan D; Carmena, Jose M

    2011-05-01

    Brain-machine interfaces (BMIs) provide a framework for studying cortical dynamics and the neural correlates of learning. Neuroprosthetic control has been associated with tuning changes in specific neurons directly projecting to the BMI (hereafter referred to as direct neurons). However, little is known about the larger network dynamics. By monitoring ensembles of neurons that were either causally linked to BMI control or indirectly involved, we found that proficient neuroprosthetic control is associated with large-scale modifications to the cortical network in macaque monkeys. Specifically, there were changes in the preferred direction of both direct and indirect neurons. Notably, with learning, there was a relative decrease in the net modulation of indirect neural activity in comparison with direct activity. These widespread differential changes in the direct and indirect population activity were markedly stable from one day to the next and readily coexisted with the long-standing cortical network for upper limb control. Thus, the process of learning BMI control is associated with differential modification of neural populations based on their specific relation to movement control. PMID:21499255

  8. Modification in drag of turbulent boundary layers resulting from manipulation of large-scale structures

    NASA Technical Reports Server (NTRS)

    Corke, T. C.; Guezennec, Y.; Nagib, H. M.

    1981-01-01

    The effects of placing a parallel-plate turbulence manipulator in a boundary layer are documented through flow visualization and hot wire measurements. The boundary layer manipulator was designed to manage the large scale structures of turbulence leading to a reduction in surface drag. The differences in the turbulent structure of the boundary layer are summarized to demonstrate differences in various flow properties. The manipulator inhibited the intermittent large scale structure of the turbulent boundary layer for at least 70 boundary layer thicknesses downstream. With the removal of the large scale, the streamwise turbulence intensity levels near the wall were reduced. The downstream distribution of the skin friction was also altered by the introduction of the manipulator.

  9. UV/ozone-oxidized large-scale graphene platform with large chemical enhancement in surface-enhanced Raman scattering.

    PubMed

    Huh, Sung; Park, Jaesung; Kim, Young Soo; Kim, Kwang S; Hong, Byung Hee; Nam, Jwa-Min

    2011-12-27

    We fabricated a highly oxidized large-scale graphene platform using chemical vapor deposition (CVD) and UV/ozone-based oxidation methods. This platform offers a large-scale surface-enhanced Raman scattering (SERS) substrate with large chemical enhancement in SERS and reproducible SERS signals over a centimeter-scale graphene surface. After UV-induced ozone generation, ozone molecules were reacted with graphene to produce oxygen-containing groups on graphene and induced the p-type doping of the graphene. These modifications introduced the structural disorder and defects on the graphene surface and resulted in a large chemical mechanism-based signal enhancement from Raman dye molecules [rhodamine B (RhB), rhodamine 6G (R6G), and crystal violet (CV) in this case] on graphene. Importantly, the enhancement factors were increased from ∼10(3) before ozone treatment to ∼10(4), which is the largest chemical enhancement factor ever on graphene, after 5 min ozone treatment due to both high oxidation and p-doping effects on graphene surface. Over a centimeter-scale area of this UV/ozone-oxidized graphene substrate, strong SERS signals were repeatedly and reproducibly detected. In a UV/ozone-based micropattern, UV/ozone-treated areas were highly Raman-active while nontreated areas displayed very weak Raman signals. PMID:22070659

  10. Differential Effects of Global Modifications to Large-Scale High Stakes Examination Programmes

    ERIC Educational Resources Information Center

    Klinger, Don A; Rogers, W. Todd

    2006-01-01

    Driven largely by calls for accountability, the use of large-scale testing is expanding in terms of the number and purposes of testing programmes. At the same time, financial constraints have resulted in attempts to reduce the lengths of such examinations. An examination of the 1994/1995 and 1995/1996 British Columbia Scholarship programme…

  11. Modification in drag of turbulent boundary layers resulting from manipulation of large-scale structures

    NASA Technical Reports Server (NTRS)

    Corke, T. C.; Guezennec, Y.; Nagib, H. M.

    1980-01-01

    The effects of placing a parallel-plate turbulence manipulator in a boundary layer are investigated by means of flow visualization and hot-wire measurements. The manipulator was found to be effective in inhibiting the intermittent large scale structure of the boundary layer, and the effect persists for at least 70 boundary-layer thicknesses downstream of the manipulator. With the removal of the large scale, there was an observed reduction in the streamwise turbulence intensity levels near the wall. The downstream distribution of the skin friction coefficient, determined from the stream wise change in fluid momentum, was also altered by the introduction of the manipulator. The data from both the visualization and hot wire studies are provided.

  12. Ensuring Adequate Health and Safety Information for Decision Makers during Large-Scale Chemical Releases

    NASA Astrophysics Data System (ADS)

    Petropoulos, Z.; Clavin, C.; Zuckerman, B.

    2015-12-01

    The 2014 4-Methylcyclohexanemethanol (MCHM) spill in the Elk River of West Virginia highlighted existing gaps in emergency planning for, and response to, large-scale chemical releases in the United States. The Emergency Planning and Community Right-to-Know Act requires that facilities with hazardous substances provide Material Safety Data Sheets (MSDSs), which contain health and safety information on the hazardous substances. The MSDS produced by Eastman Chemical Company, the manufacturer of MCHM, listed "no data available" for various human toxicity subcategories, such as reproductive toxicity and carcinogenicity. As a result of incomplete toxicity data, the public and media received conflicting messages on the safety of the contaminated water from government officials, industry, and the public health community. Two days after the governor lifted the ban on water use, the health department partially retracted the ban by warning pregnant women to continue avoiding the contaminated water, which the Centers for Disease Control and Prevention deemed safe three weeks later. The response in West Virginia represents a failure in risk communication and calls to question if government officials have sufficient information to support evidence-based decisions during future incidents. Research capabilities, like the National Science Foundation RAPID funding, can provide a solution to some of the data gaps, such as information on environmental fate in the case of the MCHM spill. In order to inform policy discussions on this issue, a methodology for assessing the outcomes of RAPID and similar National Institutes of Health grants in the context of emergency response is employed to examine the efficacy of research-based capabilities in enhancing public health decision making capacity. The results of this assessment highlight potential roles rapid scientific research can fill in ensuring adequate health and safety data is readily available for decision makers during large-scale

  13. Biologically inspired large scale chemical sensor arrays and embedded data processing

    NASA Astrophysics Data System (ADS)

    Marco, S.; Gutiérrez-Gálvez, A.; Lansner, A.; Martinez, D.; Rospars, J. P.; Beccherelli, R.; Perera, A.; Pearce, T.; Vershure, P.; Persaud, K.

    2013-05-01

    Biological olfaction outperforms chemical instrumentation in specificity, response time, detection limit, coding capacity, time stability, robustness, size, power consumption, and portability. This biological function provides outstanding performance due, to a large extent, to the unique architecture of the olfactory pathway, which combines a high degree of redundancy, an efficient combinatorial coding along with unmatched chemical information processing mechanisms. The last decade has witnessed important advances in the understanding of the computational primitives underlying the functioning of the olfactory system. EU Funded Project NEUROCHEM (Bio-ICT-FET- 216916) has developed novel computing paradigms and biologically motivated artefacts for chemical sensing taking inspiration from the biological olfactory pathway. To demonstrate this approach, a biomimetic demonstrator has been built featuring a large scale sensor array (65K elements) in conducting polymer technology mimicking the olfactory receptor neuron layer, and abstracted biomimetic algorithms have been implemented in an embedded system that interfaces the chemical sensors. The embedded system integrates computational models of the main anatomic building blocks in the olfactory pathway: the olfactory bulb, and olfactory cortex in vertebrates (alternatively, antennal lobe and mushroom bodies in the insect). For implementation in the embedded processor an abstraction phase has been carried out in which their processing capabilities are captured by algorithmic solutions. Finally, the algorithmic models are tested with an odour robot with navigation capabilities in mixed chemical plumes

  14. SureChEMBL: a large-scale, chemically annotated patent document database.

    PubMed

    Papadatos, George; Davies, Mark; Dedman, Nathan; Chambers, Jon; Gaulton, Anna; Siddle, James; Koks, Richard; Irvine, Sean A; Pettersson, Joe; Goncharoff, Nicko; Hersey, Anne; Overington, John P

    2016-01-01

    SureChEMBL is a publicly available large-scale resource containing compounds extracted from the full text, images and attachments of patent documents. The data are extracted from the patent literature according to an automated text and image-mining pipeline on a daily basis. SureChEMBL provides access to a previously unavailable, open and timely set of annotated compound-patent associations, complemented with sophisticated combined structure and keyword-based search capabilities against the compound repository and patent document corpus; given the wealth of knowledge hidden in patent documents, analysis of SureChEMBL data has immediate applications in drug discovery, medicinal chemistry and other commercial areas of chemical science. Currently, the database contains 17 million compounds extracted from 14 million patent documents. Access is available through a dedicated web-based interface and data downloads at: https://www.surechembl.org/. PMID:26582922

  15. SureChEMBL: a large-scale, chemically annotated patent document database

    PubMed Central

    Papadatos, George; Davies, Mark; Dedman, Nathan; Chambers, Jon; Gaulton, Anna; Siddle, James; Koks, Richard; Irvine, Sean A.; Pettersson, Joe; Goncharoff, Nicko; Hersey, Anne; Overington, John P.

    2016-01-01

    SureChEMBL is a publicly available large-scale resource containing compounds extracted from the full text, images and attachments of patent documents. The data are extracted from the patent literature according to an automated text and image-mining pipeline on a daily basis. SureChEMBL provides access to a previously unavailable, open and timely set of annotated compound-patent associations, complemented with sophisticated combined structure and keyword-based search capabilities against the compound repository and patent document corpus; given the wealth of knowledge hidden in patent documents, analysis of SureChEMBL data has immediate applications in drug discovery, medicinal chemistry and other commercial areas of chemical science. Currently, the database contains 17 million compounds extracted from 14 million patent documents. Access is available through a dedicated web-based interface and data downloads at: https://www.surechembl.org/. PMID:26582922

  16. Synthetically chemical-electrical mechanism for controlling large scale reversible deformation of liquid metal objects

    NASA Astrophysics Data System (ADS)

    Zhang, Jie; Sheng, Lei; Liu, Jing

    2014-11-01

    Reversible deformation of a machine holds enormous promise across many scientific areas ranging from mechanical engineering to applied physics. So far, such capabilities are still hard to achieve through conventional rigid materials or depending mainly on elastomeric materials, which however own rather limited performances and require complicated manipulations. Here, we show a basic strategy which is fundamentally different from the existing ones to realize large scale reversible deformation through controlling the working materials via the synthetically chemical-electrical mechanism (SCHEME). Such activity incorporates an object of liquid metal gallium whose surface area could spread up to five times of its original size and vice versa under low energy consumption. Particularly, the alterable surface tension based on combination of chemical dissolution and electrochemical oxidation is ascribed to the reversible shape transformation, which works much more flexible than many former deformation principles through converting electrical energy into mechanical movement. A series of very unusual phenomena regarding the reversible configurational shifts are disclosed with dominant factors clarified. This study opens a generalized way to combine the liquid metal serving as shape-variable element with the SCHEME to compose functional soft machines, which implies huge potential for developing future smart robots to fulfill various complicated tasks.

  17. Synthetically chemical-electrical mechanism for controlling large scale reversible deformation of liquid metal objects.

    PubMed

    Zhang, Jie; Sheng, Lei; Liu, Jing

    2014-01-01

    Reversible deformation of a machine holds enormous promise across many scientific areas ranging from mechanical engineering to applied physics. So far, such capabilities are still hard to achieve through conventional rigid materials or depending mainly on elastomeric materials, which however own rather limited performances and require complicated manipulations. Here, we show a basic strategy which is fundamentally different from the existing ones to realize large scale reversible deformation through controlling the working materials via the synthetically chemical-electrical mechanism (SCHEME). Such activity incorporates an object of liquid metal gallium whose surface area could spread up to five times of its original size and vice versa under low energy consumption. Particularly, the alterable surface tension based on combination of chemical dissolution and electrochemical oxidation is ascribed to the reversible shape transformation, which works much more flexible than many former deformation principles through converting electrical energy into mechanical movement. A series of very unusual phenomena regarding the reversible configurational shifts are disclosed with dominant factors clarified. This study opens a generalized way to combine the liquid metal serving as shape-variable element with the SCHEME to compose functional soft machines, which implies huge potential for developing future smart robots to fulfill various complicated tasks. PMID:25408295

  18. Synthetically chemical-electrical mechanism for controlling large scale reversible deformation of liquid metal objects

    PubMed Central

    Zhang, Jie; Sheng, Lei; Liu, Jing

    2014-01-01

    Reversible deformation of a machine holds enormous promise across many scientific areas ranging from mechanical engineering to applied physics. So far, such capabilities are still hard to achieve through conventional rigid materials or depending mainly on elastomeric materials, which however own rather limited performances and require complicated manipulations. Here, we show a basic strategy which is fundamentally different from the existing ones to realize large scale reversible deformation through controlling the working materials via the synthetically chemical-electrical mechanism (SCHEME). Such activity incorporates an object of liquid metal gallium whose surface area could spread up to five times of its original size and vice versa under low energy consumption. Particularly, the alterable surface tension based on combination of chemical dissolution and electrochemical oxidation is ascribed to the reversible shape transformation, which works much more flexible than many former deformation principles through converting electrical energy into mechanical movement. A series of very unusual phenomena regarding the reversible configurational shifts are disclosed with dominant factors clarified. This study opens a generalized way to combine the liquid metal serving as shape-variable element with the SCHEME to compose functional soft machines, which implies huge potential for developing future smart robots to fulfill various complicated tasks. PMID:25408295

  19. Large-scale production of megakaryocytes from human pluripotent stem cells by chemically defined forward programming.

    PubMed

    Moreau, Thomas; Evans, Amanda L; Vasquez, Louella; Tijssen, Marloes R; Yan, Ying; Trotter, Matthew W; Howard, Daniel; Colzani, Maria; Arumugam, Meera; Wu, Wing Han; Dalby, Amanda; Lampela, Riina; Bouet, Guenaelle; Hobbs, Catherine M; Pask, Dean C; Payne, Holly; Ponomaryov, Tatyana; Brill, Alexander; Soranzo, Nicole; Ouwehand, Willem H; Pedersen, Roger A; Ghevaert, Cedric

    2016-01-01

    The production of megakaryocytes (MKs)-the precursors of blood platelets-from human pluripotent stem cells (hPSCs) offers exciting clinical opportunities for transfusion medicine. Here we describe an original approach for the large-scale generation of MKs in chemically defined conditions using a forward programming strategy relying on the concurrent exogenous expression of three transcription factors: GATA1, FLI1 and TAL1. The forward programmed MKs proliferate and differentiate in culture for several months with MK purity over 90% reaching up to 2 × 10(5) mature MKs per input hPSC. Functional platelets are generated throughout the culture allowing the prospective collection of several transfusion units from as few as 1 million starting hPSCs. The high cell purity and yield achieved by MK forward programming, combined with efficient cryopreservation and good manufacturing practice (GMP)-compatible culture, make this approach eminently suitable to both in vitro production of platelets for transfusion and basic research in MK and platelet biology. PMID:27052461

  20. An Efficient Approach for Preprocessing Data from a Large-Scale Chemical Sensor Array

    PubMed Central

    Leo, Marco; Distante, Cosimo; Bernabei, Mara; Persaud, Krishna

    2014-01-01

    In this paper, an artificial olfactory system (Electronic Nose) that mimics the biological olfactory system is introduced. The device consists of a Large-Scale Chemical Sensor Array (16, 384 sensors, made of 24 different kinds of conducting polymer materials) that supplies data to software modules, which perform advanced data processing. In particular, the paper concentrates on the software components consisting, at first, of a crucial step that normalizes the heterogeneous sensor data and reduces their inherent noise. Cleaned data are then supplied as input to a data reduction procedure that extracts the most informative and discriminant directions in order to get an efficient representation in a lower dimensional space where it is possible to more easily find a robust mapping between the observed outputs and the characteristics of the odors in input to the device. Experimental qualitative proofs of the validity of the procedure are given by analyzing data acquired for two different pure analytes and their binary mixtures. Moreover, a classification task is performed in order to explore the possibility of automatically recognizing pure compounds and to predict binary mixture concentrations. PMID:25254304

  1. Large-scale production of megakaryocytes from human pluripotent stem cells by chemically defined forward programming

    PubMed Central

    Moreau, Thomas; Evans, Amanda L.; Vasquez, Louella; Tijssen, Marloes R.; Yan, Ying; Trotter, Matthew W.; Howard, Daniel; Colzani, Maria; Arumugam, Meera; Wu, Wing Han; Dalby, Amanda; Lampela, Riina; Bouet, Guenaelle; Hobbs, Catherine M.; Pask, Dean C.; Payne, Holly; Ponomaryov, Tatyana; Brill, Alexander; Soranzo, Nicole; Ouwehand, Willem H.; Pedersen, Roger A.; Ghevaert, Cedric

    2016-01-01

    The production of megakaryocytes (MKs)—the precursors of blood platelets—from human pluripotent stem cells (hPSCs) offers exciting clinical opportunities for transfusion medicine. Here we describe an original approach for the large-scale generation of MKs in chemically defined conditions using a forward programming strategy relying on the concurrent exogenous expression of three transcription factors: GATA1, FLI1 and TAL1. The forward programmed MKs proliferate and differentiate in culture for several months with MK purity over 90% reaching up to 2 × 105 mature MKs per input hPSC. Functional platelets are generated throughout the culture allowing the prospective collection of several transfusion units from as few as 1 million starting hPSCs. The high cell purity and yield achieved by MK forward programming, combined with efficient cryopreservation and good manufacturing practice (GMP)-compatible culture, make this approach eminently suitable to both in vitro production of platelets for transfusion and basic research in MK and platelet biology. PMID:27052461

  2. Study of wavelength-shifting chemicals for use in large-scale water Cherenkov detectors

    SciTech Connect

    Sweany, M; Bernstein, A; Dazeley, S; Dunmore, J; Felde, J; Svoboda, R; Tripathi, S M

    2011-09-21

    Cherenkov detectors employ various methods to maximize light collection at the photomultiplier tubes (PMTs). These generally involve the use of highly reflective materials lining the interior of the detector, reflective materials around the PMTs, or wavelength-shifting sheets around the PMTs. Recently, the use of water-soluble wavelength-shifters has been explored to increase the measurable light yield of Cherenkov radiation in water. These wave-shifting chemicals are capable of absorbing light in the ultravoilet and re-emitting the light in a range detectable by PMTs. Using a 250 L water Cherenkov detector, we have characterized the increase in light yield from three compounds in water: 4-Methylumbelliferone, Carbostyril-124, and Amino-G Salt. We report the gain in PMT response at a concentration of 1 ppm as: 1.88 {+-} 0.02 for 4-Methylumbelliferone, stable to within 0.5% over 50 days, 1.37 {+-} 0.03 for Carbostyril-124, and 1.20 {+-} 0.02 for Amino-G Salt. The response of 4-Methylumbelliferone was modeled, resulting in a simulated gain within 9% of the experimental gain at 1 ppm concentration. Finally, we report an increase in neutron detection performance of a large-scale (3.5 kL) gadolinium-doped water Cherenkov detector at a 4-Methylumbelliferone concentration of 1 ppm.

  3. Large-Scale Chemical Similarity Networks for Target Profiling of Compounds Identified in Cell-Based Chemical Screens

    PubMed Central

    Lo, Yu-Chen; Senese, Silvia; Li, Chien-Ming; Hu, Qiyang; Huang, Yong; Damoiseaux, Robert; Torres, Jorge Z.

    2015-01-01

    Target identification is one of the most critical steps following cell-based phenotypic chemical screens aimed at identifying compounds with potential uses in cell biology and for developing novel disease therapies. Current in silico target identification methods, including chemical similarity database searches, are limited to single or sequential ligand analysis that have limited capabilities for accurate deconvolution of a large number of compounds with diverse chemical structures. Here, we present CSNAP (Chemical Similarity Network Analysis Pulldown), a new computational target identification method that utilizes chemical similarity networks for large-scale chemotype (consensus chemical pattern) recognition and drug target profiling. Our benchmark study showed that CSNAP can achieve an overall higher accuracy (>80%) of target prediction with respect to representative chemotypes in large (>200) compound sets, in comparison to the SEA approach (60–70%). Additionally, CSNAP is capable of integrating with biological knowledge-based databases (Uniprot, GO) and high-throughput biology platforms (proteomic, genetic, etc) for system-wise drug target validation. To demonstrate the utility of the CSNAP approach, we combined CSNAP's target prediction with experimental ligand evaluation to identify the major mitotic targets of hit compounds from a cell-based chemical screen and we highlight novel compounds targeting microtubules, an important cancer therapeutic target. The CSNAP method is freely available and can be accessed from the CSNAP web server (http://services.mbi.ucla.edu/CSNAP/). PMID:25826798

  4. Modification of input datasets for the Ensemble Streamflow Prediction based on large-scale climatic indices and weather generator

    NASA Astrophysics Data System (ADS)

    Šípek, Václav; Daňhelka, Jan

    2015-09-01

    Ensemble Streamflow Prediction (ESP) provides an efficient tool for seasonal hydrological forecasts. In this study, we propose a new modification of input data series for the ESP system used for the runoff volume prediction with a lead of one month. These series are not represented by short historical weather datasets but by longer generated synthetic weather data series. Before their submission to the hydrological model, their number is restricted by relations among observed meteorological variables (average monthly precipitation and temperature) and large-scale climatic patterns and indices (e.g. North Atlantic Oscillation, sea level pressure values and two geopotential heights). This modification was tested over a four-year testing period using the river basin in central Europe. The LARS-WG weather generator proved to be a suitable tool for the extension of the historical weather records. The modified ESP approach proved to be more efficient in the majority of months compared both to the original ESP method and reference forecast (based on probability distribution of historical discharges). The improvement over traditional ESP was most obvious in the narrower forecast interval of the expected runoff volume. The inefficient forecasts of the modified ESP scheme (compared to traditional ESP) were conditioned by an insufficient restriction of input synthetic weather datasets by the climate forecast.

  5. An in vivo large-scale chemical screening platform using Drosophila for anti-cancer drug discovery

    PubMed Central

    Willoughby, Lee F.; Schlosser, Tanja; Manning, Samuel A.; Parisot, John P.; Street, Ian P.; Richardson, Helena E.; Humbert, Patrick O.; Brumby, Anthony M.

    2013-01-01

    SUMMARY Anti-cancer drug development involves enormous expenditure and risk. For rapid and economical identification of novel, bioavailable anti-tumour chemicals, the use of appropriate in vivo tumour models suitable for large-scale screening is key. Using a Drosophila Ras-driven tumour model, we demonstrate that tumour overgrowth can be curtailed by feeding larvae with chemicals that have the in vivo pharmacokinetics essential for drug development and known efficacy against human tumour cells. We then develop an in vivo 96-well plate chemical screening platform to carry out large-scale chemical screening with the tumour model. In a proof-of-principle pilot screen of 2000 compounds, we identify the glutamine analogue, acivicin, a chemical with known activity against human tumour cells, as a potent and specific inhibitor of Drosophila tumour formation. RNAi-mediated knockdown of candidate acivicin target genes implicates an enzyme involved in pyrimidine biosynthesis, CTP synthase, as a possible crucial target of acivicin-mediated inhibition. Thus, the pilot screen has revealed that Drosophila tumours are glutamine-dependent, which is an emerging feature of many human cancers, and has validated the platform as a powerful and economical tool for in vivo chemical screening. The platform can also be adapted for use with other disease models, thus offering widespread applications in drug development. PMID:22996645

  6. Color and chemical properties of oil used for deep frying on a large scale.

    PubMed

    Totani, Nagao; Tateishi, Sayuri; Chiue, Hiroko; Mori, Terutosi

    2012-01-01

    Acid value (AV), polar compound content (PC), carbonyl value (CV) and Gardner color of oil used for deep-frying in kitchens at a supermarket, lunch chain store, restaurant, eating house, and hospital were analyzed. All AVs obtained but one (3.38) were within the limit set by the Food Sanitation Act of Japan (AV ≤ 3, peroxide value ≤ 30). However, some oil samples had a PC over 25%, which is beyond the limit legislated by some European countries. When the relation between the Gardner color and the AV, PC, or CV of the oil was investigated, well correlated logarithmic regression curves were obtained from the oil of all kitchens except the hospital kitchen. However, the use of lard-containing canola oil without oil replenishment in the eating house increased color values rapidly. All of the values obtained from pure vegetable oil used almost daily were plotted on a graph. It was found that kitchen-by-kitchen differences in fryer, vegetable oil, frying temperature, heating time, and amounts and kinds of foods fried did not influence the relation between Gardner color value versus AV, PC or CV. In conclusion, frying vegetable oil used in large-scale kitchens without official inspection can be better controlled with Gardner color determination by the operators and administrators. This would improve the quality of the oil ingested by facility patrons. PMID:22362142

  7. Chemical ordering suppresses large-scale electronic phase separation in doped manganites

    NASA Astrophysics Data System (ADS)

    Zhu, Yinyan; Du, Kai; Niu, Jiebin; Lin, Lingfang; Wei, Wengang; Liu, Hao; Lin, Hanxuan; Zhang, Kai; Yang, Tieying; Kou, Yunfang; Shao, Jian; Gao, Xingyu; Xu, Xiaoshan; Wu, Xiaoshan; Dong, Shuai; Yin, Lifeng; Shen, Jian

    2016-04-01

    For strongly correlated oxides, it has been a long-standing issue regarding the role of the chemical ordering of the dopants on the physical properties. Here, using unit cell by unit cell superlattice growth technique, we determine the role of chemical ordering of the Pr dopant in a colossal magnetoresistant (La1-yPry)1-xCaxMnO3 (LPCMO) system, which has been well known for its large length-scale electronic phase separation phenomena. Our experimental results show that the chemical ordering of Pr leads to marked reduction of the length scale of electronic phase separations. Moreover, compared with the conventional Pr-disordered LPCMO system, the Pr-ordered LPCMO system has a metal-insulator transition that is ~100 K higher because the ferromagnetic metallic phase is more dominant at all temperatures below the Curie temperature.

  8. Chemical ordering suppresses large-scale electronic phase separation in doped manganites

    PubMed Central

    Zhu, Yinyan; Du, Kai; Niu, Jiebin; Lin, Lingfang; Wei, Wengang; Liu, Hao; Lin, Hanxuan; Zhang, Kai; Yang, Tieying; Kou, Yunfang; Shao, Jian; Gao, Xingyu; Xu, Xiaoshan; Wu, Xiaoshan; Dong, Shuai; Yin, Lifeng; Shen, Jian

    2016-01-01

    For strongly correlated oxides, it has been a long-standing issue regarding the role of the chemical ordering of the dopants on the physical properties. Here, using unit cell by unit cell superlattice growth technique, we determine the role of chemical ordering of the Pr dopant in a colossal magnetoresistant (La1−yPry)1−xCaxMnO3 (LPCMO) system, which has been well known for its large length-scale electronic phase separation phenomena. Our experimental results show that the chemical ordering of Pr leads to marked reduction of the length scale of electronic phase separations. Moreover, compared with the conventional Pr-disordered LPCMO system, the Pr-ordered LPCMO system has a metal–insulator transition that is ∼100 K higher because the ferromagnetic metallic phase is more dominant at all temperatures below the Curie temperature. PMID:27053071

  9. Large-scale dynamics of directed self-assembly defects on chemically pre-patterned surface

    NASA Astrophysics Data System (ADS)

    Yoshimoto, Kenji; Taniguchi, Takashi

    2013-03-01

    Morphological defects of block copolymers are dynamically formed during the annealing step of directed self­ assembly (DSA) process. Understanding the dynamics of such defects is crucial to manufacture defect-free wafers, however it is not well-understood due to difficulties in in-situ measurements. In order to provide some insights into this problem, we have performed dynamic simulations of symmetric diblock copolymers on chemically pre-patterned surface. A simplified model, so-called the Ohta-Kawasaki (OK) model was employed in this study, whose free energy and chemical potential were expressed as a function of the local order parameters. Time evolution of the local order parameters were calculated numerically and iteratively from the equation of continuity. As a test case, the two-dimensional (2D) dynamic simulations were performed including thermal fluctuations. The time evolution of the lamella defects was successfully characterized as a function of the interactive strength between the diblock copolymers and the chemically pre-patterned surface. In the three­ dimensional (3D) dynamic simulations, some complicated morphologies formed on the chemically pre-patterned surface were found to be similar to those obtained from Monte Carlo simulations. Our preliminary simulation data prove that for small χNs, dynamic simulations of diblock copolymers with OK model could be a powerful method to predict DSA defects with reasonable accuracy and with small computational cost.

  10. Estimation Source Parameters of Large-Scale Chemical Surface Explosions and Recent Underground Nuclear Tests

    NASA Astrophysics Data System (ADS)

    Gitterman, Y.; Kim, S.; Hofstetter, R.

    2013-12-01

    Large-scale surface explosions were conducted by the Geophysical Institute of Israel at Sayarim Military Range (SMR), Negev desert: 82 tons of strong HE explosives in August 2009, and 10&100 tons of ANFO explosives in January 2011. The main goal was to provide strong controlled sources in different wind conditions, for calibration of IMS infrasound stations. Numerous dense observations of blast waves were provided by high-pressure, acoustic and seismic sensors at near-source (< 1 km) and close local (1-40 km) distances. The rarely reported Secondary Shock (SS) phenomenon was clearly observed at the all sensors. A novel empirical relationship for the new air-blast parameter - SS time delay - versus distance (both scaled by the cubic root of estimated TNT equivalent charge) was developed and analyzed. The scaled SS delays were found clearly separated for 2009 and 2011 shots, thus demonstrating dependence on the type of explosives with different detonation velocity. Additional acoustic and seismic records from very large (> 2000 tons) ANFO surface shots at White Sands Military Range (WSMR) were analyzed for SS time delay. The Secondary Shocks were revealed on the records in the range 1.5-60 km and showed consistency with the SMR data, thus extending the charge and distance range for the developed SS delay relationship. Obtained results suggest that measured SS delays can provide important information about an explosion source character, and can be used as a new simple cost-effective yield estimator for explosions with known type of explosives. The new results are compared with analogous available data of surface nuclear explosions. Special distinctions in air-blast waves are revealed and analyzed, resulting from the different source phenomenology (energy release). Two underground nuclear explosions conducted by North Korea in 2009 and 2013 were recorded by several stations of Israel Seismic Network. Pronounced minima (spectral nulls) at 1.2-1.3 Hz were revealed in the

  11. Generation of low-frequency electric and magnetic fields during large- scale chemical and nuclear explosions

    SciTech Connect

    Adushkin, V.V.; Dubinya, V.A.; Karaseva, V.A.; Soloviev, S.P.; Surkov, V.V.

    1995-06-01

    We discuss the main parameters of the electric field in the surface layer of the atmosphere and the results of the investigations of the natural electric field variations. Experimental investigations of the electromagnetic field for explosions in air are presented. Electromagnetic signals generated by underground nuclear and chemical explosions are discussed and explosions for 1976--1991 are listed. Long term anomalies of the earth`s electromagnetic field in the vicinity of underground explosions were also investigated. Study of the phenomenon of the irreversible shock magnetization showed that in the zone nearest to the explosion the quasistatic magnetic field decreases in inverse proportion to the distance.

  12. Electronic Properties of Large-scale Graphene Chemical Vapor Synthesized on Nickel and on Sapphire

    NASA Astrophysics Data System (ADS)

    Cao, Helin; Zhang, Liyuan; Chen, Yong; Yu, Qingkai; Li, Hao

    2009-03-01

    We have studied the electronic transport properties of large area few-layer graphene/graphitic films grown by two different chemical vapor based methods. The first type of samples (metal-transfer graphene) is synthesized by carbon segregation from Ni, then transferred to SiO2/Si substrates. The second type of samples is synthesized by direct chemical vapor deposition (CVD) on sapphire. We measured these samples under variable temperatures (from 2K to 300 K) and transverse magnet fields (from 0 to 7 T). For both types of samples, we found a negative magnetoresistance at low field, and carrier mobilities on the order of several hundreds of cm^2/V-s. For metal-transfer graphene in particular, we were able to measure a moderate field effect response, using the highly doped Si substrate as back gate. The observed magnetoresistance shows characteristic features of weak localization, from which we extract various carrier scattering lengths in the metal-transfer graphene samples. Comparison with those measured in mechanically exfoliated graphene suggests possibly different carrier scattering mechanisms for graphene materials prepared with different methods.

  13. Ferromagnetic inks facilitate large scale paper recycling and reduce bleach chemical consumption.

    PubMed

    Zeltner, Martin; Toedtli, Laura M; Hild, Nora; Fuhrer, Roland; Rossier, Michaël; Gerber, Lukas C; Raso, Renzo A; Grass, Robert N; Stark, Wendelin J

    2013-04-23

    Deinking is a fundamental part of paper recycling. As the global paper consumption rises and exceeds even the annual paper production, recycling of this raw material is of high importance. Magnetic ink based on carbon coated magnetic nanoparticles enables an alternative approach to state of the art paper deinking. Magnetic deinking comprises three steps (preselection, washing, and magnetic separation of fibers). Preseparation of printed from nonprinted scraps of paper is feasible and reduces the paper mass which has to be fed into a deinking process. A consecutive washing process removes surficial magnetic ink that can be collected by application of a permanent magnet. Still, printed parts are subjected to a further continuous magnetic deinking step, where magnetic and nonmagnetic paper fibers can be separated. Magnetic deinking of a model print allows recovery of more than 80% of bright fibers without any harsh chemical treatment and the re-collection of more than 82% of magnetic ink. PMID:23495668

  14. Large-Scale Synthesis of Graphene Films by Joule-Heating-Induced Chemical Vapor Deposition

    NASA Astrophysics Data System (ADS)

    Lee, Jung Min; Jeong, Hae Yong; Park, Won Il

    2010-10-01

    We report large-area synthesis of few-layer graphene films by chemical vapor deposition (CVD) in a cold-wall reactor. The key feature of this method is that the catalytic metal layers on the SiO2/Si substrates are self-heated to high growth temperature (900°C to 1000°C) by high-current Joule heating. Synthesis of high-quality graphene films, whose structural and electrical characteristics are comparable to those grown by hot-wall CVD systems, was confirmed by transmission electron microscopy images, Raman spectra, and current-voltage analysis. Optical transmittance spectra of the graphene films allowed us to estimate the number of graphene layers, which revealed that high-temperature exposure of Ni thin layers to a carbon precursor (CH4) was critical in determining the number of graphene layers. In particular, exposure to CH4 for 20 s produces very thin graphene films with an optical transmittance of 93%, corresponding to an average layer number of three and a sheet resistance of ~600 Ω/square.

  15. Synthesis of large scale graphene oxide using plasma enhanced chemical vapor deposition method and its application in humidity sensing

    NASA Astrophysics Data System (ADS)

    Liu, Yang; Chen, Yuming

    2016-03-01

    Large scale graphene oxide (GO) is directly synthesized on copper (Cu) foil by plasma enhanced chemical vapor deposition method under 500 °C and even lower temperature. Compared to the modified Hummer's method, the obtained GO sheet in this article is large, and it is scalable according to the Cu foil size. The oxygen-contained groups in the GO are introduced through the residual gas of methane (99.9% purity). To prevent the Cu surface from the bombardment of the ions in the plasma, we use low intensity discharge. Our experiment reveals that growth temperature has important influence on the carbon to oxygen ratio (C/O ratio) in the GO; and it also affects the amount of π-π* bonds between carbon atoms. Preliminary experiments on a 6 mm × 12 mm GO based humidity sensor prove that the synthesized GO reacts well to the humidity change. Our GO synthesis method may provide another channel for obtaining large scale GO in gas sensing or other applications.

  16. Chemical Modification of Polysaccharides

    PubMed Central

    Cumpstey, Ian

    2013-01-01

    This review covers methods for modifying the structures of polysaccharides. The introduction of hydrophobic, acidic, basic, or other functionality into polysaccharide structures can alter the properties of materials based on these substances. The development of chemical methods to achieve this aim is an ongoing area of research that is expected to become more important as the emphasis on using renewable starting materials and sustainable processes increases in the future. The methods covered in this review include ester and ether formation using saccharide oxygen nucleophiles, including enzymatic reactions and aspects of regioselectivity; the introduction of heteroatomic nucleophiles into polysaccharide chains; the oxidation of polysaccharides, including oxidative glycol cleavage, chemical oxidation of primary alcohols to carboxylic acids, and enzymatic oxidation of primary alcohols to aldehydes; reactions of uronic-acid-based polysaccharides; nucleophilic reactions of the amines of chitosan; and the formation of unsaturated polysaccharide derivatives. PMID:24151557

  17. Chemical modification of asphalt

    SciTech Connect

    Ju, Ruei Fu.

    1989-01-01

    Desirable properties of asphalt pavements include high stability, flexibility, and durability. In order to achieve these properties, the asphalt should bind well with mineral aggregates and the properties of the resulting asphalt concrete should change as slowly as possible during service life. The interaction of water and asphaltic concrete under particular circumstances may cause stripping or loss of adhesion and consequential detachment of the asphalt from the aggregate. Use of aggregates treated with these polymer emulsions resulted in a much stronger bond at the asphalt-aggregate interface. Scanning electron microscope studies showed that a thin polymer film covers the aggregate surface. Ethylene-vinyl acetate copolymer resin 460, ethylene-vinyl acetate copolymer resin 240, styrene butadiene copolymer, cis-1,4-polybutadiene copolymer, and polyethylene were tested as additives. The effect of these on the resistance to permanent deformation and dynamic stiffness is described in this study. The chemical changes that occurred during weathering were also addressed. The effect of oxidation on aged asphalt was determined by measuring the change in infrared absorption with time of exposure. Antioxidants which are capable of decomposing peroxides were found to extend the durability of the asphalt. By observing the concentration of peroxy radicals during the course of a chemical process as indicated by electron spin resonance peak intensity, it was possible to obtain quantitative information on the interaction of antioxidants with peroxy radicals. Indications were obtained that antioxidants are not effective in reducing the brittleness of asphalt upon aging. The effect of six plasticizers on thermal and mechanical properties of asphalt was studied. In general, use of plasticizers resulted in lowered rigidity, increased ductility and increased toughness. Tricresyl phosphate was the most effective.

  18. Natural background levels and threshold values of chemical species in three large-scale groundwater bodies in Northern Italy.

    PubMed

    Molinari, Antonio; Guadagnini, Laura; Marcaccio, Marco; Guadagnini, Alberto

    2012-05-15

    We analyze natural background levels (NBLs) and threshold values (TVs) of spatially distributed chemical species (NH(4), B and As) which may be a potential pressure and concern in three large scale alluvial and fluvio-deltaic aquifers at different depths of the Apennines and Po river plains in Emilia-Romagna, Northern Italy. Our results are based on statistical methodologies designed to separate the natural and anthropogenic contributions in monitored concentrations by modeling the empirical distribution of the detected concentration with a mixture of probability density functions. Available chemical observations are taken over a 20 years period and are associated with different depths and cover planar investigation scales of the order of hundreds of kilometers. High concentration values detected for NH(4) and B appear to be related to high natural background levels. Due to interaction with the host rock in different geochemical environments we observed that concentration vary in time and space (including in depth) consistently with the hydrogeochemical features and the occurrence of natural attenuation mechanisms in the analyzed reservoirs. Conversely, estimated As NBLs are not consistent with the conceptual model of the hydrogeochemical behavior of the systems analyzed and experimental evidences of As content in aquifer cores. This is due to the inability of these techniques to incorporate the complex dynamics of the processes associated with the specific hydrogeochemical setting. Statistical analyses performed upon aggregating the concentration data according to different time observation windows allow identifying temporal dynamics of NBLs and TVs of target compounds within the observation time frame. Our results highlight the benefit of a dynamic monitoring process and analysis of well demarcated groundwater bodies to update the associated NBLs as a function of the temporal dependence of natural processes occurring in the subsurface. Monitoring protocols could

  19. Peculiarities of Excitation of Large-Scale Plasma Density Irregularities During Modification of the Ionospheric F 2 Region by High-Power HF Radio Waves

    NASA Astrophysics Data System (ADS)

    Frolov, V. L.; Schorokhova, E. A.; Kunitsyn, V. E.; Andreeva, E. S.; Padokhin, A. M.

    2016-03-01

    We present the experimental results concerning the features of large-scale artificial plasma-density irregularities excited in the ionospheric F2 region by high-power HF radio waves. The experiments were performed in recent years using the SURA heating facility. It is shown that at the altitude of the pump-wave reflection, these irregularities are most efficiently generated in the magnetic zenith region. The effect of enhancement of the large-scale irregularity generation at the edge of the pump-wave beam is revealed. The results of studying large-scale irregularities recorded at the altitudes of the topside ionosphere are presented. Experimental results concerning the features of the internal gravity waves generated at the ionospheric altitudes during periodic heating of the ionospheric plasma by high-power HF radio waves are summarized and their possible influence on generation of artificial ionospheric irregularities at a long distance from the heater is discussed.

  20. Large scale dynamic systems

    NASA Technical Reports Server (NTRS)

    Doolin, B. F.

    1975-01-01

    Classes of large scale dynamic systems were discussed in the context of modern control theory. Specific examples discussed were in the technical fields of aeronautics, water resources and electric power.

  1. A review of approaches to estimate wildfire plume injection height within large-scale atmospheric chemical transport models

    NASA Astrophysics Data System (ADS)

    Paugam, R.; Wooster, M.; Freitas, S.; Martin, M. Val

    2016-01-01

    Landscape fires produce smoke containing a very wide variety of chemical species, both gases and aerosols. For larger, more intense fires that produce the greatest amounts of emissions per unit time, the smoke tends initially to be transported vertically or semi-vertically close by the source region, driven by the intense heat and convective energy released by the burning vegetation. The column of hot smoke rapidly entrains cooler ambient air, forming a rising plume within which the fire emissions are transported. The characteristics of this plume, and in particular the height to which it rises before releasing the majority of the smoke burden into the wider atmosphere, are important in terms of how the fire emissions are ultimately transported, since for example winds at different altitudes may be quite different. This difference in atmospheric transport then may also affect the longevity, chemical conversion, and fate of the plumes chemical constituents, with for example very high plume injection heights being associated with extreme long-range atmospheric transport. Here we review how such landscape-scale fire smoke plume injection heights are represented in larger-scale atmospheric transport models aiming to represent the impacts of wildfire emissions on component of the Earth system. In particular we detail (i) satellite Earth observation data sets capable of being used to remotely assess wildfire plume height distributions and (ii) the driving characteristics of the causal fires. We also discuss both the physical mechanisms and dynamics taking place in fire plumes and investigate the efficiency and limitations of currently available injection height parameterizations. Finally, we conclude by suggesting some future parameterization developments and ideas on Earth observation data selection that may be relevant to the instigation of enhanced methodologies aimed at injection height representation.

  2. A facile chemical-mechanical polishing lift-off transfer process toward large scale Cu(In,Ga)Se2 thin-film solar cells on arbitrary substrates

    NASA Astrophysics Data System (ADS)

    Tseng, Kuan-Chun; Yen, Yu-Ting; Thomas, Stuart R.; Tsai, Hung-Wei; Hsu, Cheng-Hung; Tsai, Wen-Chi; Shen, Chang-Hong; Shieh, Jia-Min; Wang, Zhiming M.; Chueh, Yu-Lun

    2016-02-01

    The fabrication of Cu(In,Ga)Se2 (CIGS) solar cells on flexible substrates is a non-trivial task due to thermal and ion diffusion related issues. In order to circumvent these issues, we have developed a chemical-mechanical polishing lift-off (CMPL) transfer process, enabling the direct transfer of CIGS solar cells from conventional soda-lime glass (SLG) onto arbitrary flexible substrates up to 4 cm2 in size. The structural and compositional nature of the pre- and post-transferred films is examined using electron microscopy, X-ray diffraction analysis, Raman and photoluminescence spectroscopy. We demonstrate the fabrication of solar cells on a range of flexible substrates while being able to maintain 75% cell efficiency (η) when compared to pre-transferred solar cells. The results obtained in this work suggest that our transfer process offers a highly promising approach toward large scale fabrication of CIGS-based solar cells on a wide variety of flexible substrates, suitable for use in the large scale CIGS photovoltaic industry.The fabrication of Cu(In,Ga)Se2 (CIGS) solar cells on flexible substrates is a non-trivial task due to thermal and ion diffusion related issues. In order to circumvent these issues, we have developed a chemical-mechanical polishing lift-off (CMPL) transfer process, enabling the direct transfer of CIGS solar cells from conventional soda-lime glass (SLG) onto arbitrary flexible substrates up to 4 cm2 in size. The structural and compositional nature of the pre- and post-transferred films is examined using electron microscopy, X-ray diffraction analysis, Raman and photoluminescence spectroscopy. We demonstrate the fabrication of solar cells on a range of flexible substrates while being able to maintain 75% cell efficiency (η) when compared to pre-transferred solar cells. The results obtained in this work suggest that our transfer process offers a highly promising approach toward large scale fabrication of CIGS-based solar cells on a wide

  3. Chemical modification of surface properties

    SciTech Connect

    Koel, B.E.; Windham, R.G.

    1987-01-01

    Chemically tailoring materials to have new and unique surface properties has enormous potential in a wide variety of applications for interfacial phenomena in materials science and catalysis. Recent work from our laboratory on model systems designed to explain how changes in geometric and electronic structure of metal surfaces affect surface chemistry are discussed. Specifically, the influence of potassium and bismuth coadsorption with small molecules on a Pt(111) single crystal surface will be described. We will also discuss the chemical reactivity of palladium metal monolayers and thin films which have been recently reported to have dramatically altered geometric and electronic structure. 31 refs., 3 figs.

  4. Chemical vapour deposition enhanced by atmospheric microwave plasmas: a large-scale industrial process or the next nanomanufacturing tool?

    NASA Astrophysics Data System (ADS)

    Belmonte, T.; Gries, T.; Cardoso, R. P.; Arnoult, G.; Kosior, F.; Henrion, G.

    2011-04-01

    This paper describes several specific aspects of atmospheric plasma deposition carried out with a microwave resonant cavity. Deposition over a wide substrate is first studied. We show that high deposition rates (several hundreds of μm h-1) are due to localization of fluxes on the substrate by convection when slightly turbulent flows are used. Next, we describe possible routes to localize deposition over a nanometre-sized area. Scaling down atmospheric plasma deposition is possible and two strategies to reach nanometre scales are described. Finally, we study self-organization of SiO2 nanodots deposited by chemical vapour deposition at atmospheric pressure enhanced by an Ar-O2 micro-afterglow operating at high temperature (>1200 K). When the film being deposited is thin enough (~500 nm) nanodots are obtained and they can be assembled into threads to create patterned surfaces. When the coating becomes thicker (~1 µm), and for relatively high content in HMDSO, SiO2 walls forming hexagonal cells are obtained.

  5. Large scale air pollution estimation method combining land use regression and chemical transport modeling in a geostatistical framework.

    PubMed

    Akita, Yasuyuki; Baldasano, Jose M; Beelen, Rob; Cirach, Marta; de Hoogh, Kees; Hoek, Gerard; Nieuwenhuijsen, Mark; Serre, Marc L; de Nazelle, Audrey

    2014-04-15

    In recognition that intraurban exposure gradients may be as large as between-city variations, recent air pollution epidemiologic studies have become increasingly interested in capturing within-city exposure gradients. In addition, because of the rapidly accumulating health data, recent studies also need to handle large study populations distributed over large geographic domains. Even though several modeling approaches have been introduced, a consistent modeling framework capturing within-city exposure variability and applicable to large geographic domains is still missing. To address these needs, we proposed a modeling framework based on the Bayesian Maximum Entropy method that integrates monitoring data and outputs from existing air quality models based on Land Use Regression (LUR) and Chemical Transport Models (CTM). The framework was applied to estimate the yearly average NO2 concentrations over the region of Catalunya in Spain. By jointly accounting for the global scale variability in the concentration from the output of CTM and the intraurban scale variability through LUR model output, the proposed framework outperformed more conventional approaches. PMID:24621302

  6. Self-Reported Household Impacts of Large-Scale Chemical Contamination of the Public Water Supply, Charleston, West Virginia, USA

    PubMed Central

    Schade, Charles P.; Wright, Nasandra; Gupta, Rahul; Latif, David A.; Jha, Ayan; Robinson, John

    2015-01-01

    A January 2014 industrial accident contaminated the public water supply of approximately 300,000 homes in and near Charleston, West Virginia (USA) with low levels of a strongly-smelling substance consisting principally of 4-methylcyclohexane methanol (MCHM). The ensuing state of emergency closed schools and businesses. Hundreds of people sought medical care for symptoms they related to the incident. We surveyed 498 households by telephone to assess the episode’s health and economic impact as well as public perception of risk communication by responsible officials. Thirty two percent of households (159/498) reported someone with illness believed to be related to the chemical spill, chiefly dermatological or gastrointestinal symptoms. Respondents experienced more frequent symptoms of psychological distress during and within 30 days of the emergency than 90 days later. Sixty-seven respondent households (13%) had someone miss work because of the crisis, missing a median of 3 days of work. Of 443 households reporting extra expenses due to the crisis, 46% spent less than $100, while 10% spent over $500 (estimated average about $206). More than 80% (401/485) households learned of the spill the same day it occurred. More than 2/3 of households complied fully with “do not use” orders that were issued; only 8% reported drinking water against advice. Household assessments of official communications varied by source, with local officials receiving an average “B” rating, whereas some federal and water company communication received a “D” grade. More than 90% of households obtained safe water from distribution centers or stores during the emergency. We conclude that the spill had major economic impact with substantial numbers of individuals reporting incident-related illnesses and psychological distress. Authorities were successful supplying emergency drinking water, but less so with risk communication. PMID:25951197

  7. Chemical modification of polymeric microchip devices.

    PubMed

    Muck, Alexander; Svatos, Ales

    2007-12-15

    Analytical polymeric microchips in both fluidic and array formats offer short analysis times, coupling of many sample processing and chemical reaction steps on one platform with minimal sample and reagent consumption, as well as low cost, minimal fabrication times and disposability. However, the invariable bulk properties of most commercial polymers have driven researchers to develop new modification strategies. This article critically reviews the scope and development of chemical modifications of such polymeric chips since 2003. Surface modifications were based on chemical derivatization or activation of surface layers with reagent solutions, reactive gases and irradiation. Bulk modification of polymer chips used newly incorporation of monomers with selective chemical functionalities throughout the bulk polymer material and integrated the chip modification and fabrication into a single step. Such modifications hold a great promise for establishing a true 'lab-on-chip' as can be seen from many novel applications for modulating electroosmosis, suppressing protein adsorption in microchip capillary electrophoretic separations, extraction of analytes and for zone-specific binding of enzymes and other biomolecules. PMID:18371647

  8. Large-scale fabrication of tower-like, flower-like, and tube-like ZnO arrays by a simple chemical solution route.

    PubMed

    Wang, Zhuo; Qian, Xue-Feng; Yin, Jie; Zhu, Zi-Kang

    2004-04-13

    Large-scale arrayed ZnO crystals with a series of novel morphologies, including tower-like, flower-like, and tube-like samples, have been successfully fabricated by a simple aqueous solution route. The morphology and orientation of the obtained ZnO crystal arrays can be conveniently tailored by changing the reactants and experimental conditions. For example, the tower-like ZnO crystal arrays were obtained in a reaction solution system including zinc salt, ammonia, ammonium salt, and thiourea, and the orientation of these tower-like crystals could be controlled by the contents of these reactants. Flower-like ZnO arrays were obtained at lower temperatures, and tube-like ZnO arrays were obtained by ultrasonic pretreatment of the reaction system. The growth mechanism of the tower-like and tube-like ZnO crystals was investigated by FESEM. The results show that tower-like crystals grow layer by layer, while tube-like crystals grow from active nanowires. Ultrasonic pretreatment is proved to be effective in promoting the formation of active nuclei, which have important effects on the formation of the tube-like ZnO crystals. In addition, large-scale arrays of these ZnO crystals can be successfully synthesized onto various substrates such as amorphous glass, crystalline quartz, and PET. This implies this chemical method has a wide application in the fabrication of nano-/microscale devices. PMID:15875880

  9. A facile chemical-mechanical polishing lift-off transfer process toward large scale Cu(In,Ga)Se2 thin-film solar cells on arbitrary substrates.

    PubMed

    Tseng, Kuan-Chun; Yen, Yu-Ting; Thomas, Stuart R; Tsai, Hung-Wei; Hsu, Cheng-Hung; Tsai, Wen-Chi; Shen, Chang-Hong; Shieh, Jia-Min; Wang, Zhiming M; Chueh, Yu-Lun

    2016-03-01

    The fabrication of Cu(In,Ga)Se2 (CIGS) solar cells on flexible substrates is a non-trivial task due to thermal and ion diffusion related issues. In order to circumvent these issues, we have developed a chemical-mechanical polishing lift-off (CMPL) transfer process, enabling the direct transfer of CIGS solar cells from conventional soda-lime glass (SLG) onto arbitrary flexible substrates up to 4 cm(2) in size. The structural and compositional nature of the pre- and post-transferred films is examined using electron microscopy, X-ray diffraction analysis, Raman and photoluminescence spectroscopy. We demonstrate the fabrication of solar cells on a range of flexible substrates while being able to maintain 75% cell efficiency (η) when compared to pre-transferred solar cells. The results obtained in this work suggest that our transfer process offers a highly promising approach toward large scale fabrication of CIGS-based solar cells on a wide variety of flexible substrates, suitable for use in the large scale CIGS photovoltaic industry. PMID:26878109

  10. Large Scale Computing

    NASA Astrophysics Data System (ADS)

    Capiluppi, Paolo

    2005-04-01

    Large Scale Computing is acquiring an important role in the field of data analysis and treatment for many Sciences and also for some Social activities. The present paper discusses the characteristics of Computing when it becomes "Large Scale" and the current state of the art for some particular application needing such a large distributed resources and organization. High Energy Particle Physics (HEP) Experiments are discussed in this respect; in particular the Large Hadron Collider (LHC) Experiments are analyzed. The Computing Models of LHC Experiments represent the current prototype implementation of Large Scale Computing and describe the level of maturity of the possible deployment solutions. Some of the most recent results on the measurements of the performances and functionalities of the LHC Experiments' testing are discussed.

  11. Bimetallic catalyst for synthesizing quasi-aligned, well-graphitized multiwalled carbon nanotube bundles on a large scale by the catalytic chemical vapor deposition method.

    PubMed

    Mukhopadhyay, Kingsuk; Mathur, Gyanesh Narayan

    2002-04-01

    An effective method of growth by catalytic chemical vapor deposition (CCVD) to get a large-scale yield of carbon nanotubes is reported. In this method, acetylene is decomposed catalytically over well-dispersed metal particles (Co-Fe and Co-Ni) embedded in commercially available zeolite at a lower temperature (600-700 degrees C). The two binary-metal catalysts (Co-Fe and Co-Ni) used are compared by scanning electron microscopy (SEM) and transmission electron microscopy (TEM). Crucial reaction parameters, such as reaction time, temperature, and the effect of purity of gas to obtain optimum production of the nanotubes, both qualitatively and quantitatively, are also reported. PMID:12908309

  12. Large-scale green chemical synthesis of adjacent quaternary chiral centers by continuous flow photodecarbonylation of aqueous suspensions of nanocrystalline ketones.

    PubMed

    Hernández-Linares, María Guadalupe; Guerrero-Luna, Gabriel; Pérez-Estrada, Salvador; Ellison, Martha; Ortin, Maria-Mar; Garcia-Garibay, Miguel A

    2015-02-01

    To demonstrate the ease of scale-up and synthetic potential of some organic solid state reactions, we report the synthesis, crystallization, and solid state photochemistry of acyclic, homochiral, hexasubstituted (+)-(2R,4S)-2-carbomethoxy-4-cyano-2,4-diphenyl-3-pentanone 1. We demonstrate that solid state photodecarbonylation of (+)-(2R,4S)-1 affords (+)-(2R,3R)-2-carbomethoxy-3-cyano-2,3-diphenyl-butane 2 with two adjacent stereogenic, all-carbon substituted quaternary centers, in quantitative chemical yield and 100% diastereoselectivity and enantiomeric excess. The efficient multigram photodecarbonylation of (+)-(2R,4S)-1 as a nanocrystalline suspension in water using a continuous flow photoreactor shows that the large-scale synthesis of synthetically challenging compounds using photochemical synthesis in the solid state can be executed in a remarkably simple manner. PMID:25578232

  13. Comparison of the effects in the rock mass of large-scale chemical and nuclear explosions. Final technical report, June 9, 1994--October 9, 1994

    SciTech Connect

    Spivak, A.A.

    1995-04-01

    It was found that in the first approximation the mechanical effect of underground nuclear explosion is analogous to the effect of chemical explosion. Really qualitative analysis shows that accompanying mechanical effects of nuclear and chemical explosions are the same: in the both cases explosion consequences are characterized by formation of the camouplet cavity (crater after explosion near free surface), destruction of the rock massif near explosion centre, creation of the stress wave, which forms seismoexplosive effect a long distance from explosion epicentre. Qualitative likeness of underground nuclear explosions and chemical explosions is the base of modelling the mechanical effects of the underground nuclear explosion. In this paper we`ll compare two explosions: nuclear (15-04-84) and chemical (27.06.95) with large power. These explosions were realized at the same geological conditions at Degelen test area, which is a part of the Semipalatinsk Test Site. In the case of the nuclear explosion, the charge was disposed in the face of the deep horizontal gallery. The charge of the chemical explosion was a semisphere from explosives at the rock massif surface. In the both case rock massif behavior after explosions was investigated at underground conditions (in the case of chemical explosion -- in the long underground excavation from explosion epicentre). Mechanical effects from the nuclear and chemical explosions were investigated with the same methods. The changes in geological medium after a large-scale explosive actions will be analyzed in detail too. Investigations of the influence of tectonic energy on the mechanical effects after underground nuclear, explosions represents the main interest. In this paper we`ll discuss this question on the data from underground nuclear explosion, realized 08.09.89 in the deep well at the Balapan test area, at the Semipalatinsk Test Site.

  14. Large-Scale Disasters

    NASA Astrophysics Data System (ADS)

    Gad-El-Hak, Mohamed

    "Extreme" events - including climatic events, such as hurricanes, tornadoes, and drought - can cause massive disruption to society, including large death tolls and property damage in the billions of dollars. Events in recent years have shown the importance of being prepared and that countries need to work together to help alleviate the resulting pain and suffering. This volume presents a review of the broad research field of large-scale disasters. It establishes a common framework for predicting, controlling and managing both manmade and natural disasters. There is a particular focus on events caused by weather and climate change. Other topics include air pollution, tsunamis, disaster modeling, the use of remote sensing and the logistics of disaster management. It will appeal to scientists, engineers, first responders and health-care professionals, in addition to graduate students and researchers who have an interest in the prediction, prevention or mitigation of large-scale disasters.

  15. A simple and effective chromosome modification method for large-scale deletion of genome sequences and identification of essential genes in fission yeast

    PubMed Central

    Hirashima, Kyotaro; Iwaki, Tomoko; Takegawa, Kaoru; Giga-Hama, Yuko; Tohda, Hideki

    2006-01-01

    The technologies for chromosome modification developed to date are not satisfactorily universal, owing to the typical requirements for special enzymes and sequences. In the present report, we propose a new approach for chromosome modification in Schizosaccharomyces pombe that does not involve any special enzymes or sequences. This method, designated the ‘Latour system’, has wide applicability with extremely high efficiency, although both the basic principle and the operation are very simple. We demonstrate the ability of the Latour system to discriminate essential genes, with a long chromosomal area of 100 kb containing 33 genes deleted simultaneously and efficiently. Since no foreign sequences are retained after deletion using the Latour system, this system can be repeatedly applied at other sites. Provided that a negative selectable marker is available, the Latour system relies solely upon homologous recombination, which is highly conserved in living organisms. For this reason, it is expected that the system will be applicable to various yeasts. PMID:16434698

  16. Bioconversion of wheat straw to ethanol: chemical modification, enzymatic hydrolysis, and fermentation

    SciTech Connect

    Detroy, R.W.; Lindenfelser, L.A.; Sommer, S.; Orton, W.L.

    1981-07-01

    The current studies involved a series of chemical treatment combinations upon wheat straw (WS), and subsequent hydrolysis of released cellulose to fermentable sugars. Primary chemical treatment of WS was followed by additional, secondary treatment of residues with either acids or alkali. Following primary and secondary treatment the WS residues were hydrolyzed with cellulase, and final glucose yields were determined. Samples of residues and effluents taken after each reaction also were analyzed. Large-scale experiments for both saccharification and alcohol production were investigated in a glass-column reactor. The results showed that conversion of the cellulosic component to sugar varied with the chemical modification steps. 23 refs.

  17. Elucidating the Physical and Chemical Structural Changes of Proteins on Clay Mineral Surfaces using Large-scale Molecular Dynamics Simulations in Tandem with NMR Spectroscopy

    NASA Astrophysics Data System (ADS)

    Andersen, A.; Govind, N.; Washton, N.; Reardon, P.; Chacon, S. S.; Burton, S.; Lipton, A.; Kleber, M.; Qafoku, N. P.

    2014-12-01

    Carbon cycling among the three major Earth's pools, i.e., atmosphere, terrestrial systems and oceans, has received increased attention because the concentration of CO2 in the atmosphere has increased significantly in recent years reaching concentrations greater than 400 ppm that have never been recorded before, warming the planet and changing the climate. Within the terrestrial system, soil organic matter (SOM) represents an important sub-pool of carbon. The associations of SOM with soil mineral interfaces and particles, creating micro-aggregates, are believed to regulate the bioavailability of the associated organic carbon by protecting it from transformations and mineralization to carbon dioxide. Nevertheless, the molecular scale interactions of different types of SOM with a variety of soil minerals and the controls on the extent and rate of SOM transformation and mineralization are not well documented in the current literature. Given the importance of SOM fate and persistence in soils and the current knowledge gaps, the application of atomistic scale simulations to study SOM/mineral associations in abiotic model systems offers rich territory for original and impactful science. Molecular modeling and simulation of SOM is a burgeoning and challenging avenue for aiding the characterization of these complex compounds and chemical systems and for studying their interactions in self-assembled aggregates composed of different organic matter compounds and with mineral surfaces of different types and common in soils, which are thought to contribute to their reactive properties including recalcitrance potential and resistance to mineralization. Here, we will discuss our large-scale molecular dynamics simulation efforts to explore the interaction of proteins with clay minerals (i.e., phyllosilicates such as kaolinite, smectite and micas), including the potential physical and chemical structural changes of proteins, protein adsorption by polar and permanently charged

  18. Changes in the distribution of the grey mangrove Avicennia marina (Forsk.) using large scale aerial color infrared photographs: are the changes related to habitat modification for mosquito control?

    NASA Astrophysics Data System (ADS)

    Jones, J.; Dale, P. E. R.; Chandica, A. L.; Breitfuss, M. J.

    2004-09-01

    Runnelling, a method of habitat modification used for mosquito management in intertidal saltmarshes in Australia, alters marsh hydrology. The objective of this research was to assess if runnelling had affected the distribution of the grey mangrove ( Avicennia marina (Forsk.)) at a study site in southeast Queensland. Since runnelling is carried out in diverse marshes a second aim was to assess differences in mangrove colonisation in the two main saltmarsh species in the area. These are marine couch [ Sporobolus virginicus (L.) Kunth.] and samphire [ Sarcocornia quinqueflora (Bunge ex Ung.-Stern.)]. Runnels at the study site were in an area dominated by Sporobolus. The mangrove area was measured by classifying digital color infrared (CIR) data obtained from aerial photographs acquired in 1982, which was 3 years before runnelling, and in 1987, 1991 and 1999, 2-14 years after. Changes in the spatial extent of A. marina were identified using difference images produced from post-classification change detection. The results showed that runnels did not significantly influence the distribution of A. marina at the study site. At a more detailed level differences in A. marina establishment in the Sporobolus and Sarcocornia areas were determined from counts of trees on the aerial photographs. There was a greater proportion of mangroves in Sarcocornia than Sporobolus and this increased over time. This may be related to differences in density between the plant species, to grapsid crab activity or to other edaphic conditions. There may be implications for runnelling in Sarcocornia marshes. The large increase observed in A. marina in the area generally is likely to be related to factors such as catchment modification or tidal/sea-level changes. It is concluded that runnelling has not led to mangrove establishment in the Sporobolus dominated saltmarsh.

  19. Boundary Layer Flow, Heat, and Chemical Transfer near Vertical Heated Boreholes in Water-Saturated Rock: A Mechanism for Developing a Large Scale Underground Hydrothermal Experiment (DUSEL)

    NASA Astrophysics Data System (ADS)

    Mullally, D. M.; Lowell, R. P.

    2012-12-01

    We investigate a means of developing a large-scale hydrothermal experiment at the DUSEL site in the Homestake Mine, South Dakota, or elsewhere, by considering boundary layer flow, heat, and chemical transfer near an internally heated vertical borehole or borehole array emplaced in a water-saturated porous medium with homogeneous permeability. We use scale analysis to determine the relationships between vertical fluid velocity u, boundary layer thickness δ and the Rayleigh number Ra for both a single borehole maintained at constant temperature and a linear array of boreholes maintained at constant heat flux. For a single borehole, u ~ (a/y)Ra and δ ~ yRa^-1/2, whereas for the borehole array u ~(a/y) Ra^-1/3 and δ ~ yRa^-1/3, where y is the borehole height and a is the thermal diffusivity. We find that for y = 100 m, optimum initial permeability lies between ~ 10^-10 -10^-12 m^2 and the optimum heat flux is ~ 60 W/m^2. We also use scale analysis to determine the permeability change resulting from thermoelastic stresses generated by heating the rock near the boreholes and find that these stresses do not significantly impact the permeability so long as the initial porosity is ~ 5%, or the initial crack aspect ratios are less than or equal to 10^-2. Finally, we use scale analysis to investigate mineral dissolution within the boundary layer flow adjacent to the boreholes. Using the above velocity scaling and assuming linear reaction kinetics, and a crustal porosity of 5%, thermodynamic equilibrium may be obtained at the top of a 100 m high borehole provided reaction rate constants are in the range of ~ 10^-7 - 10^-8 s-1.

  20. Large scale tracking algorithms.

    SciTech Connect

    Hansen, Ross L.; Love, Joshua Alan; Melgaard, David Kennett; Karelitz, David B.; Pitts, Todd Alan; Zollweg, Joshua David; Anderson, Dylan Z.; Nandy, Prabal; Whitlow, Gary L.; Bender, Daniel A.; Byrne, Raymond Harry

    2015-01-01

    Low signal-to-noise data processing algorithms for improved detection, tracking, discrimination and situational threat assessment are a key research challenge. As sensor technologies progress, the number of pixels will increase signi cantly. This will result in increased resolution, which could improve object discrimination, but unfortunately, will also result in a significant increase in the number of potential targets to track. Many tracking techniques, like multi-hypothesis trackers, suffer from a combinatorial explosion as the number of potential targets increase. As the resolution increases, the phenomenology applied towards detection algorithms also changes. For low resolution sensors, "blob" tracking is the norm. For higher resolution data, additional information may be employed in the detection and classfication steps. The most challenging scenarios are those where the targets cannot be fully resolved, yet must be tracked and distinguished for neighboring closely spaced objects. Tracking vehicles in an urban environment is an example of such a challenging scenario. This report evaluates several potential tracking algorithms for large-scale tracking in an urban environment.

  1. Large scale traffic simulations

    SciTech Connect

    Nagel, K.; Barrett, C.L.; Rickert, M.

    1997-04-01

    Large scale microscopic (i.e. vehicle-based) traffic simulations pose high demands on computational speed in at least two application areas: (i) real-time traffic forecasting, and (ii) long-term planning applications (where repeated {open_quotes}looping{close_quotes} between the microsimulation and the simulated planning of individual person`s behavior is necessary). As a rough number, a real-time simulation of an area such as Los Angeles (ca. 1 million travellers) will need a computational speed of much higher than 1 million {open_quotes}particle{close_quotes} (= vehicle) updates per second. This paper reviews how this problem is approached in different projects and how these approaches are dependent both on the specific questions and on the prospective user community. The approaches reach from highly parallel and vectorizable, single-bit implementations on parallel supercomputers for Statistical Physics questions, via more realistic implementations on coupled workstations, to more complicated driving dynamics implemented again on parallel supercomputers. 45 refs., 9 figs., 1 tab.

  2. Chemical modifications of ribonuclease U1.

    PubMed

    Hashimoto, J; Takahashi, K

    1977-04-01

    In order to obtain information on the nature of the amino acid residues involved in the activity of ribonuclease U1 [EC 3.1.4.8], various chemical modifications of the enzyme were carried out. RNase U1 was inactivated by reaction with iodoacetate at pH 5.5 with concomitant incorporation of 1 carboxymethyl group per molecule of the enzyme. The residue specifically modified by iodoacetate was identified as one of the glutamic acid residues, as in the case of RNase T1. The enzyme was also inactivated extensively by reaction with iodoacetamide at pH 8.0 with the loss of about one residue each of histidine and lysine. When RNase U1 was treated with a large excess of phenylglyoxal, the enzymatic activity and binding ability toward 3'-GMP were lost, with simultaneous modification of about 1 residue of arginine. The reaction of citraconic anhydride with RNase U1 led to the loss of enzymatic activity and modification of about 1 residue of lysine. The inactivated enzyme, however, retained binding ability toward 3'-GMP. These results indicate that there are marked similarities in the active sites of RNases T1 and U1. PMID:18450

  3. Chemical sensors based on the modification of a resonator cavity

    NASA Astrophysics Data System (ADS)

    Hennig, Oliver; Mendes, Sergio B.; Fallahi, Mahmoud; Peyghambarian, Nasser

    1999-02-01

    In this paper, we present a chemical sensor based on the modification of an optical resonator: the optical path length of the resonant cavity is changed by the chemical in question, thus shifting its resonant frequency.

  4. On the spot ethical decision-making in CBRN (chemical, biological, radiological or nuclear event) response: approaches to on the spot ethical decision-making for first responders to large-scale chemical incidents.

    PubMed

    Rebera, Andrew P; Rafalowski, Chaim

    2014-09-01

    First responders to chemical, biological, radiological, or nuclear (CBRN) events face decisions having significant human consequences. Some operational decisions are supported by standard operating procedures, yet these may not suffice for ethical decisions. Responders will be forced to weigh their options, factoring-in contextual peculiarities; they will require guidance on how they can approach novel (indeed unique) ethical problems: they need strategies for "on the spot" ethical decision making. The primary aim of this paper is to examine how first responders should approach on the spot ethical decision-making amid the stress and uncertainty of a CBRN event. Drawing on the long-term professional CBRN experience of one of the authors, this paper sets out a series of practical ethical dilemmas potentially arising in the context of a large-scale chemical incident. We propose a broadly consequentialist approach to on the spot ethical decision-making, but one which incorporates ethical values and rights as "side-constraints". PMID:24488722

  5. Galaxy clustering on large scales.

    PubMed

    Efstathiou, G

    1993-06-01

    I describe some recent observations of large-scale structure in the galaxy distribution. The best constraints come from two-dimensional galaxy surveys and studies of angular correlation functions. Results from galaxy redshift surveys are much less precise but are consistent with the angular correlations, provided the distortions in mapping between real-space and redshift-space are relatively weak. The galaxy two-point correlation function, rich-cluster two-point correlation function, and galaxy-cluster cross-correlation function are all well described on large scales ( greater, similar 20h-1 Mpc, where the Hubble constant, H0 = 100h km.s-1.Mpc; 1 pc = 3.09 x 10(16) m) by the power spectrum of an initially scale-invariant, adiabatic, cold-dark-matter Universe with Gamma = Omegah approximately 0.2. I discuss how this fits in with the Cosmic Background Explorer (COBE) satellite detection of large-scale anisotropies in the microwave background radiation and other measures of large-scale structure in the Universe. PMID:11607400

  6. Very Large Scale Integration (VLSI).

    ERIC Educational Resources Information Center

    Yeaman, Andrew R. J.

    Very Large Scale Integration (VLSI), the state-of-the-art production techniques for computer chips, promises such powerful, inexpensive computing that, in the future, people will be able to communicate with computer devices in natural language or even speech. However, before full-scale VLSI implementation can occur, certain salient factors must be…

  7. Hot spot formation and chemical reaction initiation in shocked HMX crystals with nanovoids: a large-scale reactive molecular dynamics study.

    PubMed

    Zhou, Tingting; Lou, Jianfeng; Zhang, Yangeng; Song, Huajie; Huang, Fenglei

    2016-07-14

    We report million-atom reactive molecular dynamic simulations of shock initiation of β-cyclotetramethylene tetranitramine (β-HMX) single crystals containing nanometer-scale spherical voids. Shock induced void collapse and subsequent hot spot formation as well as chemical reaction initiation are observed which depend on the void size and impact strength. For an impact velocity of 1 km s(-1) and a void radius of 4 nm, the void collapse process includes three stages; the dominant mechanism is the convergence of upstream molecules toward the centerline and the downstream surface of the void forming flowing molecules. Hot spot formation also undergoes three stages, and the principal mechanism is kinetic energy transforming to thermal energy due to the collision of flowing molecules on the downstream surface. The high temperature of the hot spot initiates a local chemical reaction, and the breakage of the N-NO2 bond plays the key role in the initial reaction mechanism. The impact strength and void size have noticeable effects on the shock dynamical process, resulting in a variation of the predominant mechanisms leading to void collapse and hot spot formation. Larger voids or stronger shocks result in more intense hot spots and, thus, more violent chemical reactions, promoting more reaction channels and generating more reaction products in a shorter duration. The reaction products are mainly concentrated in the developed hot spot, indicating that the chemical reactivity of the hmx crystal is greatly enhanced by void collapse. The detailed information derived from this study can aid a thorough understanding of the role of void collapse in hot spot formation and the chemical reaction initiation of explosives. PMID:27307079

  8. Large-scale extraction of proteins.

    PubMed

    Cunha, Teresa; Aires-Barros, Raquel

    2002-01-01

    The production of foreign proteins using selected host with the necessary posttranslational modifications is one of the key successes in modern biotechnology. This methodology allows the industrial production of proteins that otherwise are produced in small quantities. However, the separation and purification of these proteins from the fermentation media constitutes a major bottleneck for the widespread commercialization of recombinant proteins. The major production costs (50-90%) for typical biological product resides in the purification strategy. There is a need for efficient, effective, and economic large-scale bioseparation techniques, to achieve high purity and high recovery, while maintaining the biological activity of the molecule. Aqueous two-phase systems (ATPS) allow process integration as simultaneously separation and concentration of the target protein is achieved, with posterior removal and recycle of the polymer. The ease of scale-up combined with the high partition coefficients obtained allow its potential application in large-scale downstream processing of proteins produced by fermentation. The equipment and the methodology for aqueous two-phase extraction of proteins on a large scale using mixer-settlerand column contractors are described. The operation of the columns, either stagewise or differential, are summarized. A brief description of the methods used to account for mass transfer coefficients, hydrodynamics parameters of hold-up, drop size, and velocity, back mixing in the phases, and flooding performance, required for column design, is also provided. PMID:11876297

  9. Regioselective chemical modification of monoclonal antibodies

    DOEpatents

    Ranadive, G.; Rozenzweig, H.S.; Epperly, M.; Bloomer, W.

    1993-05-04

    A method is presented of selectively modifying an immunoglobulin having at least one Fab region and at least one Fc region. Each region has an isoelectric point where the isoelectric point of the Fab fragment of the immunoglobulin is different from the isoelectric point of the Fc fragment of the immunoglobulin. The method comprises of a modification of the immunoglobulin at a pH between the respective isoelectric points of the Fab and Fc fragments of the immunoglobulin.

  10. Regioselective chemical modification of monoclonal antibodies

    DOEpatents

    Ranadive, Girish; Rosenzweig, Howard S.; Epperly, Michael; Bloomer, William

    1993-01-01

    A method of selectively modifying an immunoglobulin having at least one Fab region and at least one Fc region, each region having an isoelectric point wherein said isoelectric point of the Fab fragment of said immunoglobulin is different than the isoelectric point of the Fc fragment of the immunoglobulin, said method comprising modification of the immunoglobulin at a pH between the respective isoelectric points of the Fab and Fc fragments of the immunoglobulin.

  11. Large-scale micro- and nanopatterns of Cu(In,Ga)Se2 thin film solar cells by mold-assisted chemical-etching process.

    PubMed

    Wang, Yi-Chung; Cheng, Hsiang-Ying; Yen, Yu-Ting; Wu, Tsung-Ta; Hsu, Cheng-Hung; Tsai, Hung-Wei; Shen, Chang-Hong; Shieh, Jia-Min; Chueh, Yu-Lun

    2015-04-28

    A reactive mold-assisted chemical etching (MACE) process through an easy-to-make agarose stamp soaked in bromine methanol etchant to rapidly imprint larger area micro- and nanoarrays on CIGS substrates was demonstrated. Interestingly, by using the agarose stamp during the MACE process with and without additive containing oil and triton, CIGS microdome and microhole arrays can be formed on the CIGS substrate. Detailed formation mechanisms of microstructures and the chemical composition variation after the etching process were investigated. In addition, various microand nanostructures were also demonstrated by this universal approach. The microstructure arrays integrated into standard CIGS solar cells with thinner thickness can still achieve an efficiency of 11.22%, yielding an enhanced efficiency of ∼18% compared with that of their planar counterpart due to an excellent absorption behavior confirmed by the simulation results, which opens up a promising way for the realization of high-efficiency micro- or nanostructured thin-film solar cells. Finally, the complete dissolution of agarose stamp into hot water demonstrates an environmentally friendly method by the mold-assisted chemical etching process through an easy-to-make agarose stamp. PMID:25769317

  12. Chemical biology: Protein modification in a trice

    NASA Astrophysics Data System (ADS)

    Maynard, Heather

    2015-10-01

    Organometallic reagents have been developed that chemically modify proteins and peptides specifically at cysteine amino-acid residues -- potentially offering a general route to making therapeutically useful compounds. See Letter p.687

  13. Modification of the upper atmosphere with chemicals found in rocket exhaust

    SciTech Connect

    Bernhardt, P.A.; Zinn, J.; Mendillo, M.; Baumgardner, J.

    1982-01-01

    Rockets, burning above 200 km altitude, release exhaust vapors which react chemically with the plasma comprising the F-region ionosphere. The two major types of atmospheric modification produced by rocket exhaust are: (1) the formation of large scale ionospheric holes, and (2) the enhancement of the airglow emissions. The ionospheric holes are regions tens of kilometers in diameter where the plasma concentration can be reduced by a factor of ten or more. Plasma instabilities may produce irregularities at the edges of the holes. Communication and navigation systems relying on radio propagation through the modified ionosphere may be affected. Airglow enhancements are a result of excited neutral species being produced by chemical reactions between the rocket exhaust and the ionospheric plasma. For example, the 630 nm line from atomic oxygen may increase twenty-fold in intensity over the ambient level. This paper reviews experimental observations and theoretical treatments of ionospheric modification produced by gas releases in the upper atmosphere. Recent experimental measurements of the ionospheric modification by an ATLAS-F launch vehicle are presented. The plans for future experiments are discussed.

  14. Chemical modifications of renewable cellulosic materials

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In agriculture, there is a fair amount of byproducts and waste materials. These materials typically contain significant portions of cellulose and hemicellulose. A good opportunity is to take advantage of these relatively cheap renewable materials, carry out chemical reactions, and increase their v...

  15. Microfluidic large-scale integration.

    PubMed

    Thorsen, Todd; Maerkl, Sebastian J; Quake, Stephen R

    2002-10-18

    We developed high-density microfluidic chips that contain plumbing networks with thousands of micromechanical valves and hundreds of individually addressable chambers. These fluidic devices are analogous to electronic integrated circuits fabricated using large-scale integration. A key component of these networks is the fluidic multiplexor, which is a combinatorial array of binary valve patterns that exponentially increases the processing power of a network by allowing complex fluid manipulations with a minimal number of inputs. We used these integrated microfluidic networks to construct the microfluidic analog of a comparator array and a microfluidic memory storage device whose behavior resembles random-access memory. PMID:12351675

  16. Chemical modification of antifungal polyene macrolide antibiotics

    NASA Astrophysics Data System (ADS)

    Solovieva, S. E.; Olsufyeva, E. N.; Preobrazhenskaya, M. N.

    2011-02-01

    The review summarizes advances in the methods for the synthesis of polyene antibiotics (amphotericin B, partricin A, etc.) and investigations of the structure-activity relationship made in the last 15 years. State-of-the-art approaches based on the combination of the chemical synthesis and genetic engineering are considered. Emphasis is given to the design of semisynthetic antifungal agents against chemotherapy-resistant pathogens having the highest therapeutic indices. Recent results of research on the mechanisms of action of polyenes are outlined.

  17. Improved piezoelectric properties of cellular polypropylene ferroelectrets by chemical modification

    NASA Astrophysics Data System (ADS)

    An, Zhenlian; Zhao, Min; Yao, Junlan; Zhang, Yewen; Xia, Zhongfu

    2009-06-01

    To improve the thermal stability of piezoelectricity of polypropylene (PP) ferroelectrets, chemical modification of the cellular PP film was performed via chromic acid oxidation and then hydrofluoric acid treatment. Deep chemical modification is achieved as indicated by the energy-dispersive X-ray analyses on the cross-section of the modified cellular PP film. The results of the isothermal decay for piezoelectric d 33-coefficient at 70°C indicate the improved thermal stability of piezoelectricity and the enhanced piezoelectric activity of the modified PP ferroelectrets. The former is attributed to the improvement of thermal stability of the charges trapped in the internal void surface layers as indicated by the thermally stimulated discharge measurements, while the latter results not only from the improved thermal stability of the charges but also from the reduction in Young’s modulus of the PP ferroelectrets due to the chemical modification as revealed by the dielectric resonance analyses.

  18. Chemical and structural modifications of RNAi therapeutics.

    PubMed

    Ku, Sook Hee; Jo, Sung Duk; Lee, Yeon Kyung; Kim, Kwangmeyung; Kim, Sun Hwa

    2016-09-01

    Small interfering RNA (siRNA), a 21-23nt double-stranded RNA responsible for post-transcriptional gene silencing, has attracted great interests as promising genomic drugs, due to its strong ability to silence target genes in a sequence-specific manner. Despite high silencing efficiency and on-target specificity, the clinical translation of siRNA has been hindered by its inherent features: poor intracellular delivery, limited blood stability, unpredictable immune responses and unwanted off-targeting effects. To overcome these hindrances, researchers have made various advances to modify siRNA itself and to improve its delivery. In this review paper, first we briefly discuss the innate properties and delivery barriers of siRNA. Then, we describe recent progress in (1) chemically and structurally modified siRNAs to solve their intrinsic problems and (2) siRNA delivery formulations including siRNA conjugates, polymerized siRNA, and nucleic acid-based nanoparticles to improve in vivo delivery. PMID:26549145

  19. Chemical surface modification of fluorocarbon polymers by excimer laser processing

    NASA Astrophysics Data System (ADS)

    Niino, Hiroyuki; Yabe, Akira

    1996-04-01

    Surface of poly(tetrafluoroethylene) [PTFE] film was modified chemically by an ArF excimer laser-induced reaction in a hydrazine gas atmosphere. The polymer surface modified upon the irradiation of 1000 pulses at 27 mJ cm -2, which was a fairly lower fluence than the ablation threshold for usual polymer films, showed hydrophilicity (contact angle for water: 30°) enough to be metallized by chemical plating. The mechanism for chemical surface modification was investigated by FTIR, XPS, and SIMS analyses. The laser-treated PTFE film was metallized by a chemical plating process. These processes will be used to fabricate printed wiring boards for high frequency electronics.

  20. Large scale topography of Io

    NASA Technical Reports Server (NTRS)

    Gaskell, R. W.; Synnott, S. P.

    1987-01-01

    To investigate the large scale topography of the Jovian satellite Io, both limb observations and stereographic techniques applied to landmarks are used. The raw data for this study consists of Voyager 1 images of Io, 800x800 arrays of picture elements each of which can take on 256 possible brightness values. In analyzing this data it was necessary to identify and locate landmarks and limb points on the raw images, remove the image distortions caused by the camera electronics and translate the corrected locations into positions relative to a reference geoid. Minimizing the uncertainty in the corrected locations is crucial to the success of this project. In the highest resolution frames, an error of a tenth of a pixel in image space location can lead to a 300 m error in true location. In the lowest resolution frames, the same error can lead to an uncertainty of several km.

  1. Challenges for Large Scale Simulations

    NASA Astrophysics Data System (ADS)

    Troyer, Matthias

    2010-03-01

    With computational approaches becoming ubiquitous the growing impact of large scale computing on research influences both theoretical and experimental work. I will review a few examples in condensed matter physics and quantum optics, including the impact of computer simulations in the search for supersolidity, thermometry in ultracold quantum gases, and the challenging search for novel phases in strongly correlated electron systems. While only a decade ago such simulations needed the fastest supercomputers, many simulations can now be performed on small workstation clusters or even a laptop: what was previously restricted to a few experts can now potentially be used by many. Only part of the gain in computational capabilities is due to Moore's law and improvement in hardware. Equally impressive is the performance gain due to new algorithms - as I will illustrate using some recently developed algorithms. At the same time modern peta-scale supercomputers offer unprecedented computational power and allow us to tackle new problems and address questions that were impossible to solve numerically only a few years ago. While there is a roadmap for future hardware developments to exascale and beyond, the main challenges are on the algorithmic and software infrastructure side. Among the problems that face the computational physicist are: the development of new algorithms that scale to thousands of cores and beyond, a software infrastructure that lifts code development to a higher level and speeds up the development of new simulation programs for large scale computing machines, tools to analyze the large volume of data obtained from such simulations, and as an emerging field provenance-aware software that aims for reproducibility of the complete computational workflow from model parameters to the final figures. Interdisciplinary collaborations and collective efforts will be required, in contrast to the cottage-industry culture currently present in many areas of computational

  2. Large Scale Homing in Honeybees

    PubMed Central

    Pahl, Mario; Zhu, Hong; Tautz, Jürgen; Zhang, Shaowu

    2011-01-01

    Honeybee foragers frequently fly several kilometres to and from vital resources, and communicate those locations to their nest mates by a symbolic dance language. Research has shown that they achieve this feat by memorizing landmarks and the skyline panorama, using the sun and polarized skylight as compasses and by integrating their outbound flight paths. In order to investigate the capacity of the honeybees' homing abilities, we artificially displaced foragers to novel release spots at various distances up to 13 km in the four cardinal directions. Returning bees were individually registered by a radio frequency identification (RFID) system at the hive entrance. We found that homing rate, homing speed and the maximum homing distance depend on the release direction. Bees released in the east were more likely to find their way back home, and returned faster than bees released in any other direction, due to the familiarity of global landmarks seen from the hive. Our findings suggest that such large scale homing is facilitated by global landmarks acting as beacons, and possibly the entire skyline panorama. PMID:21602920

  3. Large Scale Nanolaminate Deformable Mirror

    SciTech Connect

    Papavasiliou, A; Olivier, S; Barbee, T; Miles, R; Chang, K

    2005-11-30

    This work concerns the development of a technology that uses Nanolaminate foils to form light-weight, deformable mirrors that are scalable over a wide range of mirror sizes. While MEMS-based deformable mirrors and spatial light modulators have considerably reduced the cost and increased the capabilities of adaptive optic systems, there has not been a way to utilize the advantages of lithography and batch-fabrication to produce large-scale deformable mirrors. This technology is made scalable by using fabrication techniques and lithography that are not limited to the sizes of conventional MEMS devices. Like many MEMS devices, these mirrors use parallel plate electrostatic actuators. This technology replicates that functionality by suspending a horizontal piece of nanolaminate foil over an electrode by electroplated nickel posts. This actuator is attached, with another post, to another nanolaminate foil that acts as the mirror surface. Most MEMS devices are produced with integrated circuit lithography techniques that are capable of very small line widths, but are not scalable to large sizes. This technology is very tolerant of lithography errors and can use coarser, printed circuit board lithography techniques that can be scaled to very large sizes. These mirrors use small, lithographically defined actuators and thin nanolaminate foils allowing them to produce deformations over a large area while minimizing weight. This paper will describe a staged program to develop this technology. First-principles models were developed to determine design parameters. Three stages of fabrication will be described starting with a 3 x 3 device using conventional metal foils and epoxy to a 10-across all-metal device with nanolaminate mirror surfaces.

  4. Large-Scale Information Systems

    SciTech Connect

    D. M. Nicol; H. R. Ammerlahn; M. E. Goldsby; M. M. Johnson; D. E. Rhodes; A. S. Yoshimura

    2000-12-01

    Large enterprises are ever more dependent on their Large-Scale Information Systems (LSLS), computer systems that are distinguished architecturally by distributed components--data sources, networks, computing engines, simulations, human-in-the-loop control and remote access stations. These systems provide such capabilities as workflow, data fusion and distributed database access. The Nuclear Weapons Complex (NWC) contains many examples of LSIS components, a fact that motivates this research. However, most LSIS in use grew up from collections of separate subsystems that were not designed to be components of an integrated system. For this reason, they are often difficult to analyze and control. The problem is made more difficult by the size of a typical system, its diversity of information sources, and the institutional complexities associated with its geographic distribution across the enterprise. Moreover, there is no integrated approach for analyzing or managing such systems. Indeed, integrated development of LSIS is an active area of academic research. This work developed such an approach by simulating the various components of the LSIS and allowing the simulated components to interact with real LSIS subsystems. This research demonstrated two benefits. First, applying it to a particular LSIS provided a thorough understanding of the interfaces between the system's components. Second, it demonstrated how more rapid and detailed answers could be obtained to questions significant to the enterprise by interacting with the relevant LSIS subsystems through simulated components designed with those questions in mind. In a final, added phase of the project, investigations were made on extending this research to wireless communication networks in support of telemetry applications.

  5. Recent advances in the chemical modification of unsaturated polymers

    NASA Technical Reports Server (NTRS)

    Schulz, D. N.; Turner, S. R.; Golub, M. A.

    1982-01-01

    The present discussion has the objective to update the most comprehensive reviews on the considered subject and to fill in the gaps of less complete, but more modern treatments. Only simple chemical functionalization or structural modification of unsaturated polymers are covered, and the literature of diene polymer modification since 1974 is emphasized. Attention is given to hydrogenation, halogenation and hydrohalogenation, cyclization, cis-trans isomerization, epoxidation, ene and other cycloaddition reactions, sulfonation, carboxylation, phosphonylation, sulfenyl chloride addition, carbene addition, metalation, and silylation. It is pointed out that modern synthetic reagents and catalysts have been advantageously employed to improve process and/or product quality. Synthetic techniques have been refined to allow the selective modification of specific polymer microstructures or blocks.

  6. Chemical modification: the key to clinical application of RNA interference?

    PubMed Central

    Corey, David R.

    2007-01-01

    RNA interference provides a potent and specific method for controlling gene expression in human cells. To translate this potential into a broad new family of therapeutics, it is necessary to optimize the efficacy of the RNA-based drugs. As discussed in this Review, it might be possible to achieve this optimization using chemical modifications that improve their in vivo stability, cellular delivery, biodistribution, pharmacokinetics, potency, and specificity. PMID:18060019

  7. Chemical Modification for PAN Fibers during Heat-treatment Process

    NASA Astrophysics Data System (ADS)

    Wang, Yi; Yin, Wenyan

    Chemical modification for Polyacrylonitrile (PAN) fibers during heat-treatment process were systematically studied by DSC, FT-IR, EA, XPS, etal. Comparing with original PAN fibers, chemical reactions, structures and elemental compositions of fibers modified with potassium permanganate (KMnO4) solutions were totally changed at a certain extent. KMnO4 had reduced the activation energy of cyclization, decreased the area and widened the peak of exothermic curve, decreased the velocity of cyclization reaction, increased the oxygen content about 67%, hence increased C-O-C and C=O groups and the core/shell ratio.

  8. Needs, opportunities, and options for large scale systems research

    SciTech Connect

    Thompson, G.L.

    1984-10-01

    The Office of Energy Research was recently asked to perform a study of Large Scale Systems in order to facilitate the development of a true large systems theory. It was decided to ask experts in the fields of electrical engineering, chemical engineering and manufacturing/operations research for their ideas concerning large scale systems research. The author was asked to distribute a questionnaire among these experts to find out their opinions concerning recent accomplishments and future research directions in large scale systems research. He was also requested to convene a conference which included three experts in each area as panel members to discuss the general area of large scale systems research. The conference was held on March 26--27, 1984 in Pittsburgh with nine panel members, and 15 other attendees. The present report is a summary of the ideas presented and the recommendations proposed by the attendees.

  9. Large scale DNA microsequencing device

    DOEpatents

    Foote, R.S.

    1999-08-31

    A microminiature sequencing apparatus and method provide means for simultaneously obtaining sequences of plural polynucleotide strands. The apparatus comprises a microchip into which plural channels have been etched using standard lithographic procedures and chemical wet etching. The channels include a reaction well and a separating section. Enclosing the channels is accomplished by bonding a transparent cover plate over the apparatus. A first oligonucleotide strand is chemically affixed to the apparatus through an alkyl chain. Subsequent nucleotides are selected by complementary base pair bonding. A target nucleotide strand is used to produce a family of labelled sequencing strands in each channel which are separated in the separating section. During or following separation the sequences are determined using appropriate detection means. 11 figs.

  10. Large scale DNA microsequencing device

    DOEpatents

    Foote, Robert S.

    1997-01-01

    A microminiature sequencing apparatus and method provide means for simultaneously obtaining sequences of plural polynucleotide strands. The apparatus comprises a microchip into which plural channels have been etched using standard lithographic procedures and chemical wet etching. The channels include a reaction well and a separating section. Enclosing the channels is accomplished by bonding a transparent cover plate over the apparatus. A first oligonucleotide strand is chemically affixed to the apparatus through an alkyl chain. Subsequent nucleotides are selected by complementary base pair bonding. A target nucleotide strand is used to produce a family of labelled sequencing strands in each channel which are separated in the separating section. During or following separation the sequences are determined using appropriate detection means.

  11. Large scale DNA microsequencing device

    DOEpatents

    Foote, Robert S.

    1999-01-01

    A microminiature sequencing apparatus and method provide means for simultaneously obtaining sequences of plural polynucleotide strands. The apparatus comprises a microchip into which plural channels have been etched using standard lithographic procedures and chemical wet etching. The channels include a reaction well and a separating section. Enclosing the channels is accomplished by bonding a transparent cover plate over the apparatus. A first oligonucleotide strand is chemically affixed to the apparatus through an alkyl chain. Subsequent nucleotides are selected by complementary base pair bonding. A target nucleotide strand is used to produce a family of labelled sequencing strands in each channel which are separated in the separating section. During or following separation the sequences are determined using appropriate detection means.

  12. Large scale DNA microsequencing device

    DOEpatents

    Foote, R.S.

    1997-08-26

    A microminiature sequencing apparatus and method provide a means for simultaneously obtaining sequences of plural polynucleotide strands. The apparatus cosists of a microchip into which plural channels have been etched using standard lithographic procedures and chemical wet etching. The channels include a reaction well and a separating section. Enclosing the channels is accomplished by bonding a transparent cover plate over the apparatus. A first oligonucleotide strand is chemically affixed to the apparatus through an alkyl chain. Subsequent nucleotides are selected by complementary base pair bonding. A target nucleotide strand is used to produce a family of labelled sequencing strands in each channel which are separated in the separating section. During or following separation the sequences are determined using appropriate detection means. 17 figs.

  13. Modification of palm oil by chemical and enzyme catalyzed interesterification.

    PubMed

    Krishna De, Bijay; Dahyabhai Patel, Jignesh

    2010-01-01

    In a unique attempt modification of only palm oil has been investigated. Triacylglycerols of palm oil has been randomized by chemical and biochemical means. Chemical randomization was carried out using sodium methoxide (NaOMe: 0.4 to 0.6 %, w/w) whereas the biochemical modifications were performed using five different commercial lipases from Amano Enzymes. It was observed that after chemical randomization (for 15 minutes at 90 degrees C) using sodium methoxide (0.5 %, w/w) catalyst the melting point of refined palm oil has risen from 32.0 degrees C to 40.1 degrees C. Chemical treatments for 15 minutes at 60 degrees C in miscella phase (60 %, w/v oil in hexane) using 0.5 %, w/v sodium methoxide resulted increase in melting point from 32.0 degrees C to 42.0 degrees C. After enzymatic treatment using lipases it was observed that the melting point may rise from 32.0 degrees C to 38.5 degrees C (in 15 minutes at 45.0 degrees C). All the five enzymes were found to be active in respect of randomization capacity and active at very low concentration 0.004 to 0.010 % (w/w). PMID:20484834

  14. Surface chemical modification for exceptional wear life of MEMS materials

    NASA Astrophysics Data System (ADS)

    Singh, R. Arvind; Satyanarayana, N.; Sinha, Sujeet Kumar

    2011-12-01

    Micro-Electro-Mechanical-Systems (MEMS) are built at micro/nano-scales. At these scales, the interfacial forces are extremely strong. These forces adversely affect the smooth operation and cause wear resulting in the drastic reduction in wear life (useful operating lifetime) of actuator-based devices. In this paper, we present a surface chemical modification method that reduces friction and significantly extends the wear life of the two most popular MEMS structural materials namely, silicon and SU-8 polymer. The method includes surface chemical treatment using ethanolamine-sodium phosphate buffer, followed by coating of perfluoropolyether (PFPE) nanolubricant on (i) silicon coated with SU-8 thin films (500 nm) and (ii) MEMS process treated SU-8 thick films (50 μm). After the surface chemical modification, it was observed that the steady-state coefficient of friction of the materials reduced by 4 to 5 times and simultaneously their wear durability increased by more than three orders of magnitude (> 1000 times). The significant reduction in the friction coefficients is due to the lubrication effect of PFPE nanolubricant, while the exceptional increase in their wear life is attributed to the bonding between the -OH functional group of ethanolamine treated SU-8 thin/thick films and the -OH functional group of PFPE. The surface chemical modification method acts as a common route to enhance the performance of both silicon and SU-8 polymer. It is time-effective (process time ≤ 11 min), cost-effective and can be readily integrated into MEMS fabrication/assembly processes. It can also work for any kind of structural material from which the miniaturized devices are/can be made.

  15. Large-Scale Reform Comes of Age

    ERIC Educational Resources Information Center

    Fullan, Michael

    2009-01-01

    This article reviews the history of large-scale education reform and makes the case that large-scale or whole system reform policies and strategies are becoming increasingly evident. The review briefly addresses the pre 1997 period concluding that while the pressure for reform was mounting that there were very few examples of deliberate or…

  16. Large-scale infrared scene projectors

    NASA Astrophysics Data System (ADS)

    Murray, Darin A.

    1999-07-01

    Large-scale infrared scene projectors, typically have unique opto-mechanical characteristics associated to their application. This paper outlines two large-scale zoom lens assemblies with different environmental and package constraints. Various challenges and their respective solutions are discussed and presented.

  17. Chemical modification of proteins during peroxidation of phospholipids.

    PubMed

    Januszewski, Andrzej S; Alderson, Nathan L; Jenkins, Alicia J; Thorpe, Suzanne R; Baynes, John W

    2005-07-01

    Chemical modification of proteins by advanced glycation and lipoxidation end products is implicated in the pathogenesis of macrovascular disease in aging and diabetes. To identify biomarkers of the lipoxidative modification of protein, we studied the oxidation of phospholipids in the presence of the model protein RNase A and compared protein-bound products formed in these reactions with those formed during oxidation of plasma proteins. Metal-catalyzed oxidation of 1-palmitoyl-2-arachidonoyl-phosphatidylcholine or 1-palmitoyl-2-linoleoyl-phosphatidylcholine in the presence of RNase led to the loss of amino groups in RNase and the incorporation of phosphate, hexanoate, pentanedioate, nonanedioate, and palmitate into protein. Protein-bound palmitate and phosphate correlated strongly with one another, and protein-bound pentanedioate and nonanedioate, derived from arachidonate and linoleate, respectively, accounted for approximately 20% of the cross-linking of lipid phosphorus to protein. Similar results were obtained on oxidation of total plasma or isolated LDL. We conclude that alkanedioic acids are quantitatively important linkers of oxidized phospholipids to proteins and that measurement of protein-bound phosphate and long-chain fatty acids may be useful for assessing long-term lipid peroxidative damage to proteins in vivo. Analyses of plasma proteins from control and diabetic patients indicated significant increases in lipoxidative modification of protein in diabetic compared with control subjects. PMID:15805546

  18. Synthesis of small and large scale dynamos

    NASA Astrophysics Data System (ADS)

    Subramanian, Kandaswamy

    Using a closure model for the evolution of magnetic correlations, we uncover an interesting plausible saturated state of the small-scale fluctuation dynamo (SSD) and a novel analogy between quantum mechanical tunnelling and the generation of large-scale fields. Large scale fields develop via the α-effect, but as magnetic helicity can only change on a resistive timescale, the time it takes to organize the field into large scales increases with magnetic Reynolds number. This is very similar to the results which obtain from simulations using the full MHD equations.

  19. 76 FR 50815 - TSCA Inventory Update Reporting Modifications; Chemical Data Reporting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-16

    ... Update Reporting Modifications; Chemical Data Reporting; Final Rule #0;#0;Federal Register / Vol. 76 , No... Parts 704, 710, and 711 RIN 2070-AJ43 TSCA Inventory Update Reporting Modifications; Chemical Data... definitional modifications and additions. 3. EPA is amending 40 CFR 710.53, which appears in the new 40...

  20. Implementation of Large Scale Integrated (LSI) circuit design software

    NASA Technical Reports Server (NTRS)

    Kuehlthau, R. L.; Pitts, E. R.

    1976-01-01

    Portions of the Computer Aided Design and Test system, a collection of Large Scale Integrated (LSI) circuit design programs were modified and upgraded. Major modifications were made to the Mask Analysis Program in the form of additional operating commands and file processing options. Modifications were also made to the Artwork Interactive Design System to correct some deficiencies in the original program as well as to add several new command features related to improving the response of AIDS when dealing with large files. The remaining work was concerned with updating various programs within CADAT to incorporate the silicon on sapphire silicon gate technology.

  1. Acoustic Studies of the Large Scale Ocean Circulation

    NASA Technical Reports Server (NTRS)

    Menemenlis, Dimitris

    1999-01-01

    Detailed knowledge of ocean circulation and its transport properties is prerequisite to an understanding of the earth's climate and of important biological and chemical cycles. Results from two recent experiments, THETIS-2 in the Western Mediterranean and ATOC in the North Pacific, illustrate the use of ocean acoustic tomography for studies of the large scale circulation. The attraction of acoustic tomography is its ability to sample and average the large-scale oceanic thermal structure, synoptically, along several sections, and at regular intervals. In both studies, the acoustic data are compared to, and then combined with, general circulation models, meteorological analyses, satellite altimetry, and direct measurements from ships. Both studies provide complete regional descriptions of the time-evolving, three-dimensional, large scale circulation, albeit with large uncertainties. The studies raise serious issues about existing ocean observing capability and provide guidelines for future efforts.

  2. Large-scale regions of antimatter

    SciTech Connect

    Grobov, A. V. Rubin, S. G.

    2015-07-15

    Amodified mechanism of the formation of large-scale antimatter regions is proposed. Antimatter appears owing to fluctuations of a complex scalar field that carries a baryon charge in the inflation era.

  3. Chemically defined media modifications to lower tryptophan oxidation of biopharmaceuticals.

    PubMed

    Hazeltine, Laurie B; Knueven, Kristine M; Zhang, Yan; Lian, Zhirui; Olson, Donald J; Ouyang, Anli

    2016-01-01

    Oxidation of biopharmaceuticals is a major product quality issue with potential impacts on activity and immunogenicity. At Eli Lilly and Company, high tryptophan oxidation was observed for two biopharmaceuticals in development produced in Chinese hamster ovary cells. A switch from historical hydrolysate-containing media to chemically defined media with a reformulated basal powder was thought to be responsible, so mitigation efforts focused on media modification. Shake flask studies identified that increasing tryptophan, copper, and manganese and decreasing cysteine concentrations were individual approaches to lower tryptophan oxidation. When amino acid and metal changes were combined, the modified formulation had a synergistic impact that led to substantially less tryptophan oxidation for both biopharmaceuticals. Similar results were achieved in shake flasks and benchtop bioreactors, demonstrating the potential to implement these modifications at manufacturing scale. The modified formulation did not negatively impact cell growth and viability, product titer, purity, charge variants, or glycan profile. A potential mechanism of action is presented for each amino acid or metal factor based on its role in oxidation chemistry. This work served not only to mitigate the tryptophan oxidation issue in two Lilly biopharmaceuticals in development, but also to increase our knowledge and appreciation for the impact of media components on product quality. PMID:26560440

  4. Surface Modification of Nitinol by Chemical and Electrochemical Etching

    NASA Astrophysics Data System (ADS)

    Yang, Zhendi; Wei, Xiaojin; Cao, Peng; Gao, Wei

    2013-07-01

    In this paper, Nitinol, an equiatomic binary alloy of nickel and titanium, was surface modified for its potential biomedical applications by chemical and electrochemical etching. The main objective of the surface modification is to reduce the nickel content on the surface of Nitinol and simultaneously to a rough surface microstructure. As a result, better biocompatibility and better cell attachment would be achieved. The effect of the etching parameters was investigated, using scanning electron microscopy (SEM) equipped with energy dispersive X-ray spectrometry (EDX) and X-ray photoelectron spectrometry (XPS). The corrosion property of modified Nitinol surfaces was investigated by electrochemical work station. After etching, the Ni content in the surface layer has been reduced and the oxidation of Ti has been enhanced.

  5. Effect of chemical modifications on allergenic potency of peanut proteins

    PubMed Central

    Bencharitiwong, Ramon; van der Kleij, Hanneke P.M.; Koppelman, Stef J.

    2015-01-01

    Background: Modification of native peanut extracts could reduce adverse effects of peanut immunotherapy. Objective: We sought to compare native and chemically modified crude peanut extract (CPE) and major peanut allergens Ara h 2 and Ara h 6 in a mediator-release assay based on the rat basophilic leukemia (RBL) cell line transfected with human Fcε receptor. Methods: Native Ara h 2/6 was reduced and alkylated (RA), with or without additional glutaraldehyde treatment (RAGA). CPE was reduced and alkylated. Sera of subjects with peanut allergy (16 males; median age 7 years) were used for overnight RBL-passive sensitization. Cells were stimulated with 0.1 pg/mL to 10 μg/mL of peanut. β-N-acetylhexosaminidase release (NHR) was used as a marker of RBL degranulation, expressed as a percentage of total degranulation caused by Triton X. Results: Median peanut-specific immunoglobulin E was 233 kUA/L. Nineteen subjects were responders, NHR ≥ 10% in the mediator release assay. Responders had reduced NHR by RA and RAGA compared with the native Ara h 2/6. Modification resulted in a later onset of activation by 10- to 100-fold in concentration and a lowering of the maximum release. Modified RA-Ara h 2/6 and RAGA-Ara h 2/6 caused significantly lower maximum mediator release than native Ara h 2/6, at protein concentrations 0.1, 1, and 10 ng/mL (p < 0.001, < 0.001, and < 0.001, respectively, for RA; and < 0.001, 0.026, and 0.041, respectively, for RAGA). RA-CPE caused significantly lower maximum NHR than native CPE, at protein concentration 1 ng/mL (p < 0.001) and 10 ng/mL (p < 0.002). Responders had high rAra h 2 immunoglobulin E (mean, 61.1 kUA/L; p < 0.001) and higher NHR in mediator release assay to native Ara h 2/6 than CPE, which indicates that Ara h 2/6 were the most relevant peanut allergens in these responders. Conclusions: Chemical modification of purified native Ara h 2 and Ara h 6 reduced mediator release in an in vitro assay ∼100-fold, which indicates decreased

  6. A Pictet-Spengler ligation for protein chemical modification

    PubMed Central

    Agarwal, Paresh; van der Weijden, Joep; Sletten, Ellen M.; Rabuka, David; Bertozzi, Carolyn R.

    2013-01-01

    Aldehyde- and ketone-functionalized proteins are appealing substrates for the development of chemically modified biotherapeutics and protein-based materials. Their reactive carbonyl groups are typically conjugated with α-effect nucleophiles, such as substituted hydrazines and alkoxyamines, to generate hydrazones and oximes, respectively. However, the resulting C=N linkages are susceptible to hydrolysis under physiologically relevant conditions, which limits the utility of such conjugates in biological systems. Here we introduce a Pictet-Spengler ligation that is based on the classic Pictet-Spengler reaction of aldehydes and tryptamine nucleophiles. The ligation exploits the bioorthogonal reaction of aldehydes and alkoxyamines to form an intermediate oxyiminium ion; this intermediate undergoes intramolecular C–C bond formation with an indole nucleophile to form an oxacarboline product that is hydrolytically stable. We used the reaction for site-specific chemical modification of glyoxyl- and formylglycine-functionalized proteins, including an aldehyde-tagged variant of the therapeutic monoclonal antibody Herceptin. In conjunction with techniques for site-specific introduction of aldehydes into proteins, the Pictet-Spengler ligation offers a means to generate stable bioconjugates for medical and materials applications. PMID:23237853

  7. Chemical Modification in the Design of Immobilized Enzyme Biocatalysts: Drawbacks and Opportunities.

    PubMed

    Rueda, Nazzoly; Dos Santos, Jose C S; Ortiz, Claudia; Torres, Rodrigo; Barbosa, Oveimar; Rodrigues, Rafael C; Berenguer-Murcia, Ángel; Fernandez-Lafuente, Roberto

    2016-06-01

    Chemical modification of enzymes and immobilization used to be considered as separate ways to improve enzyme properties. This review shows how the coupled use of both tools may greatly improve the final biocatalyst performance. Chemical modification of a previously immobilized enzyme is far simpler and easier to control than the modification of the free enzyme. Moreover, if protein modification is performed to improve its immobilization (enriching the enzyme in reactive groups), the final features of the immobilized enzyme may be greatly improved. Chemical modification may be directed to improve enzyme stability, but also to improve selectivity, specificity, activity, and even cell penetrability. Coupling of immobilization and chemical modification with site-directed mutagenesis is a powerful instrument to obtain fully controlled modification. Some new ideas such as photoreceptive enzyme modifiers that change their physical properties under UV exposition are discussed. PMID:27166751

  8. Large-scale inhomogeneities and galaxy statistics

    NASA Technical Reports Server (NTRS)

    Schaeffer, R.; Silk, J.

    1984-01-01

    The density fluctuations associated with the formation of large-scale cosmic pancake-like and filamentary structures are evaluated using the Zel'dovich approximation for the evolution of nonlinear inhomogeneities in the expanding universe. It is shown that the large-scale nonlinear density fluctuations in the galaxy distribution due to pancakes modify the standard scale-invariant correlation function xi(r) at scales comparable to the coherence length of adiabatic fluctuations. The typical contribution of pancakes and filaments to the J3 integral, and more generally to the moments of galaxy counts in a volume of approximately (15-40 per h Mpc)exp 3, provides a statistical test for the existence of large scale inhomogeneities. An application to several recent three dimensional data sets shows that despite large observational uncertainties over the relevant scales characteristic features may be present that can be attributed to pancakes in most, but not all, of the various galaxy samples.

  9. Survey on large scale system control methods

    NASA Technical Reports Server (NTRS)

    Mercadal, Mathieu

    1987-01-01

    The problem inherent to large scale systems such as power network, communication network and economic or ecological systems were studied. The increase in size and flexibility of future spacecraft has put those dynamical systems into the category of large scale systems, and tools specific to the class of large systems are being sought to design control systems that can guarantee more stability and better performance. Among several survey papers, reference was found to a thorough investigation on decentralized control methods. Especially helpful was the classification made of the different existing approaches to deal with large scale systems. A very similar classification is used, even though the papers surveyed are somehow different from the ones reviewed in other papers. Special attention is brought to the applicability of the existing methods to controlling large mechanical systems like large space structures. Some recent developments are added to this survey.

  10. The large-scale distribution of galaxies

    NASA Technical Reports Server (NTRS)

    Geller, Margaret J.

    1989-01-01

    The spatial distribution of galaxies in the universe is characterized on the basis of the six completed strips of the Harvard-Smithsonian Center for Astrophysics redshift-survey extension. The design of the survey is briefly reviewed, and the results are presented graphically. Vast low-density voids similar to the void in Bootes are found, almost completely surrounded by thin sheets of galaxies. Also discussed are the implications of the results for the survey sampling problem, the two-point correlation function of the galaxy distribution, the possibility of detecting large-scale coherent flows, theoretical models of large-scale structure, and the identification of groups and clusters of galaxies.

  11. Robust large-scale parallel nonlinear solvers for simulations.

    SciTech Connect

    Bader, Brett William; Pawlowski, Roger Patrick; Kolda, Tamara Gibson

    2005-11-01

    This report documents research to develop robust and efficient solution techniques for solving large-scale systems of nonlinear equations. The most widely used method for solving systems of nonlinear equations is Newton's method. While much research has been devoted to augmenting Newton-based solvers (usually with globalization techniques), little has been devoted to exploring the application of different models. Our research has been directed at evaluating techniques using different models than Newton's method: a lower order model, Broyden's method, and a higher order model, the tensor method. We have developed large-scale versions of each of these models and have demonstrated their use in important applications at Sandia. Broyden's method replaces the Jacobian with an approximation, allowing codes that cannot evaluate a Jacobian or have an inaccurate Jacobian to converge to a solution. Limited-memory methods, which have been successful in optimization, allow us to extend this approach to large-scale problems. We compare the robustness and efficiency of Newton's method, modified Newton's method, Jacobian-free Newton-Krylov method, and our limited-memory Broyden method. Comparisons are carried out for large-scale applications of fluid flow simulations and electronic circuit simulations. Results show that, in cases where the Jacobian was inaccurate or could not be computed, Broyden's method converged in some cases where Newton's method failed to converge. We identify conditions where Broyden's method can be more efficient than Newton's method. We also present modifications to a large-scale tensor method, originally proposed by Bouaricha, for greater efficiency, better robustness, and wider applicability. Tensor methods are an alternative to Newton-based methods and are based on computing a step based on a local quadratic model rather than a linear model. The advantage of Bouaricha's method is that it can use any existing linear solver, which makes it simple to write

  12. Transparent and Flexible Large-scale Graphene-based Heater

    NASA Astrophysics Data System (ADS)

    Kang, Junmo; Lee, Changgu; Kim, Young-Jin; Choi, Jae-Boong; Hong, Byung Hee

    2011-03-01

    We report the application of transparent and flexible heater with high optical transmittance and low sheet resistance using graphene films, showing outstanding thermal and electrical properties. The large-scale graphene films were grown on Cu foil by chemical vapor deposition methods, and transferred to transparent substrates by multiple stacking. The wet chemical doping process enhanced the electrical properties, showing a sheet resistance as low as 35 ohm/sq with 88.5 % transmittance. The temperature response usually depends on the dimension and the sheet resistance of the graphene-based heater. We show that a 4x4 cm2 heater can reach 80& circ; C within 40 seconds and large-scale (9x9 cm2) heater shows uniformly heating performance, which was measured using thermocouple and infra-red camera. These heaters would be very useful for defogging systems and smart windows.

  13. The workshop on iterative methods for large scale nonlinear problems

    SciTech Connect

    Walker, H.F.; Pernice, M.

    1995-12-01

    The aim of the workshop was to bring together researchers working on large scale applications with numerical specialists of various kinds. Applications that were addressed included reactive flows (combustion and other chemically reacting flows, tokamak modeling), porous media flows, cardiac modeling, chemical vapor deposition, image restoration, macromolecular modeling, and population dynamics. Numerical areas included Newton iterative (truncated Newton) methods, Krylov subspace methods, domain decomposition and other preconditioning methods, large scale optimization and optimal control, and parallel implementations and software. This report offers a brief summary of workshop activities and information about the participants. Interested readers are encouraged to look into an online proceedings available at http://www.usi.utah.edu/logan.proceedings. In this, the material offered here is augmented with hypertext abstracts that include links to locations such as speakers` home pages, PostScript copies of talks and papers, cross-references to related talks, and other information about topics addresses at the workshop.

  14. Chemical modifications of PET induced by swift heavy ions

    NASA Astrophysics Data System (ADS)

    Steckenreiter, T.; Balanzat, E.; Fuess, H.; Trautmann, C.

    1997-08-01

    Ion induced chemical modifications of polyethylene terephthalate (PET) were studied by Fourier-transform infrared spectroscopy. The irradiations with Kr (8.6 MeV/u) and with Mo (5.6 MeV/u) ions were performed under vacuum and in oxygen atmosphere, respectively. The overall degradation of the polymer was investigated as a function of the ion fluence in the range from 1 × 10 11to 6 × 10 12 ions/cm 2. A significant loss of crystallinity is related to scission processes of the main chains at the ethylene glycol residue. The benzene ring structures show only small changes under irradiation and do not seem to participate in the degradation process significantly. While various degradation processes known from photochemical degradation take place, the creation of alkynes near the track core is found to be a unique process induced by heavy ions. The presence of oxygen during irradiation enhances the overall degradation of PET and leads to enhanced formation of alkynes and CO 2.

  15. Chemical modifications of therapeutic proteins induced by residual ethylene oxide.

    PubMed

    Chen, Louise; Sloey, Christopher; Zhang, Zhongqi; Bondarenko, Pavel V; Kim, Hyojin; Ren, Da; Kanapuram, Sekhar

    2015-02-01

    Ethylene oxide (EtO) is widely used in sterilization of drug product primary containers and medical devices. The impact of residual EtO on protein therapeutics is of significant interest in the biopharmaceutical industry. The potential for EtO to modify individual amino acids in proteins has been previously reported. However, specific identification of EtO adducts in proteins and the effect of residual EtO on the stability of therapeutic proteins has not been reported to date. This paper describes studies of residual EtO with two therapeutic proteins, a PEGylated form of the recombinant human granulocyte colony-stimulating factor (Peg-GCSF) and recombinant human erythropoietin (EPO) formulated with human serum albumin (HSA). Peg-GCSF was filled in an EtO sterilized delivery device and incubated at accelerated stress conditions. Glu-C peptide mapping and LC-MS analyses revealed residual EtO reacted with Peg-GCSF and resulted in EtO modifications at two methionine residues (Met-127 and Met-138). In addition, tryptic peptide mapping and LC-MS analyses revealed residual EtO in plastic vials reacted with HSA in EPO formulation at Met-328 and Cys-34. This paper details the work conducted to understand the effects of residual EtO on the chemical stability of protein therapeutics. PMID:25407640

  16. Large Scale Commodity Clusters for Lattice QCD

    SciTech Connect

    A. Pochinsky; W. Akers; R. Brower; J. Chen; P. Dreher; R. Edwards; S. Gottlieb; D. Holmgren; P. Mackenzie; J. Negele; D. Richards; J. Simone; W. Watson

    2002-06-01

    We describe the construction of large scale clusters for lattice QCD computing being developed under the umbrella of the U.S. DoE SciDAC initiative. We discuss the study of floating point and network performance that drove the design of the cluster, and present our plans for future multi-Terascale facilities.

  17. Management of large-scale technology

    NASA Technical Reports Server (NTRS)

    Levine, A.

    1985-01-01

    Two major themes are addressed in this assessment of the management of large-scale NASA programs: (1) how a high technology agency was a decade marked by a rapid expansion of funds and manpower in the first half and almost as rapid contraction in the second; and (2) how NASA combined central planning and control with decentralized project execution.

  18. A Large Scale Computer Terminal Output Controller.

    ERIC Educational Resources Information Center

    Tucker, Paul Thomas

    This paper describes the design and implementation of a large scale computer terminal output controller which supervises the transfer of information from a Control Data 6400 Computer to a PLATO IV data network. It discusses the cost considerations leading to the selection of educational television channels rather than telephone lines for…

  19. Large-scale CFB combustion demonstration project

    SciTech Connect

    Nielsen, P.T.; Hebb, J.L.; Aquino, R.

    1998-07-01

    The Jacksonville Electric Authority's large-scale CFB demonstration project is described. Given the early stage of project development, the paper focuses on the project organizational structure, its role within the Department of Energy's Clean Coal Technology Demonstration Program, and the projected environmental performance. A description of the CFB combustion process in included.

  20. Large-scale CFB combustion demonstration project

    SciTech Connect

    Nielsen, P.T.; Hebb, J.L.; Aquino, R.

    1998-04-01

    The Jacksonville Electric Authority`s large-scale CFB demonstration project is described. Given the early stage of project development, the paper focuses on the project organizational structure, its role within the Department of Energy`s Clean Coal Technology Demonstration Program, and the projected environmental performance. A description of the CFB combustion process is included.

  1. Evaluating Large-Scale Interactive Radio Programmes

    ERIC Educational Resources Information Center

    Potter, Charles; Naidoo, Gordon

    2009-01-01

    This article focuses on the challenges involved in conducting evaluations of interactive radio programmes in South Africa with large numbers of schools, teachers, and learners. It focuses on the role such large-scale evaluation has played during the South African radio learning programme's development stage, as well as during its subsequent…

  2. ARPACK: Solving large scale eigenvalue problems

    NASA Astrophysics Data System (ADS)

    Lehoucq, Rich; Maschhoff, Kristi; Sorensen, Danny; Yang, Chao

    2013-11-01

    ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. The package is designed to compute a few eigenvalues and corresponding eigenvectors of a general n by n matrix A. It is most appropriate for large sparse or structured matrices A where structured means that a matrix-vector product w

  3. X-ray assisted chemical modification of silicon surfaces

    NASA Astrophysics Data System (ADS)

    Pinhero, Patrick Joseph

    Interest in surface photochemistry induced by x-irradiation has received a renaissance with the construction of new synchrotron radiation facilities worldwide. There are three general pathways that a x-ray excited gas-surface system can follow that will lead to reaction. These are: (1) direct excitation, (2) excitation by emitted secondary electrons, and (3) reactions induced by hot electrons at the surface. Two chemical systems are studied in a modified x-ray photoelectron spectrometer (XPS) that allows for reactions to be studied in situ. The systems studied were (1) Nsb2/Si(100) and (2) the SFsb6/Si system. The motivation for studying these two compounds is: they are both relatively inert, i.e. no spontaneous reactions; they both are technologically interesting, possible silicon nitride formation in the case of Nsb2, and SFsb6 is a popular etchant gas in the semiconductor industry; and these two compounds have the potential to exhibit contrasting behavior. Besides its etching qualities, SFsb6 possesses a large x-ray absorption cross section and it has a large electron capture cross section. Both systems are primarily studied by XPS. XPS has the quality of providing quantifiable information about the composition of the surface and details about the chemical environment of each constituent element present. Atomic force microscopy (AFM) is used with the SFsb6 system to observe any structural changes that may occur after reaction. In the Nsb2/Si(100) system, a silicon nitride is formed at very long exposures. This is first observed after 24 hours of simultaneous exposure to Nsb2 and x-irradiation. In the SFsb6 experiments, several subsystems are examined: (1) simultaneous exposure of a Si(100) surface to SFsb6 and x-irradiation at 298K; (2) x-irradiation of a SFsb6 film adsorbed on Si(100) at 100K; (3) simultaneous exposure of a natively oxidized Si surface to SFsb6 and x-rays at 298K; and (4) x-irradiation of a SFsb6 film adsorbed on natively oxidized Si at 100K

  4. Synthesis and chemical modification of carbon nanostructures for materials applications

    NASA Astrophysics Data System (ADS)

    Higginbotham, Amanda Lynn

    This dissertation explores the structure, chemical reactivities, electromagnetic response, and materials properties of various carbon nanostructures, including single-walled carbon nanotubes (SWCNTs), multi-walled carbon nanotubes (MWCNTs), graphite, and graphene nanoribbons (GNRs). Efficient production and modification of these unique structures, each with their own distinct properties, will make them more accessible for applications in electronics, materials, and biology. A method is reported for controlling the permittivity from 1--1000 MHz of SWCNT-polymer composites (0.5 wt%) for radio frequency applications including passive RF antenna structures and EMI shielding. The magnitude of the real permittivity varied between 20 and 3.3, decreasing as higher fractions of functionalized-SWCNTs were added. The microwave absorbing properties and subsequent heating of carbon nanotubes were used to rapidly cure ceramic composites. With less than 1 wt% carbon nanotube additives and 30--40 W of directed microwave power (2.45 GHz), bulk composite samples reached temperatures above 500°C within 1 min. Graphite oxide (GO) polymer nanocomposites were developed at 1, 5, and 10 wt% for the purpose of evaluating the flammability reduction and materials properties of the resulting systems. Microscale oxygen consumption calorimetry revealed that addition of GO reduced the total heat release in all systems, and GO-polycarbonate composites demonstrated very fast self-extinguishing times in vertical open flame tests. A simple solution-based oxidative process using potassium permanganate in sulfuric acid was developed for producing nearly 100% yield of graphene nanoribbons (GNRs) by lengthwise cutting and unraveling of MWCNT sidewalls. Subsequent chemical reduction of the GNRs resulted in restoration of electrical conductivity. The GNR synthetic conditions were investigated in further depth, and an improved method which utilized a two-acid reaction medium was found to produce GNRs with

  5. Fractals and cosmological large-scale structure

    NASA Technical Reports Server (NTRS)

    Luo, Xiaochun; Schramm, David N.

    1992-01-01

    Observations of galaxy-galaxy and cluster-cluster correlations as well as other large-scale structure can be fit with a 'limited' fractal with dimension D of about 1.2. This is not a 'pure' fractal out to the horizon: the distribution shifts from power law to random behavior at some large scale. If the observed patterns and structures are formed through an aggregation growth process, the fractal dimension D can serve as an interesting constraint on the properties of the stochastic motion responsible for limiting the fractal structure. In particular, it is found that the observed fractal should have grown from two-dimensional sheetlike objects such as pancakes, domain walls, or string wakes. This result is generic and does not depend on the details of the growth process.

  6. Condition Monitoring of Large-Scale Facilities

    NASA Technical Reports Server (NTRS)

    Hall, David L.

    1999-01-01

    This document provides a summary of the research conducted for the NASA Ames Research Center under grant NAG2-1182 (Condition-Based Monitoring of Large-Scale Facilities). The information includes copies of view graphs presented at NASA Ames in the final Workshop (held during December of 1998), as well as a copy of a technical report provided to the COTR (Dr. Anne Patterson-Hine) subsequent to the workshop. The material describes the experimental design, collection of data, and analysis results associated with monitoring the health of large-scale facilities. In addition to this material, a copy of the Pennsylvania State University Applied Research Laboratory data fusion visual programming tool kit was also provided to NASA Ames researchers.

  7. Large-scale quantification of CVD graphene surface coverage

    NASA Astrophysics Data System (ADS)

    Ambrosi, Adriano; Bonanni, Alessandra; Sofer, Zdeněk; Pumera, Martin

    2013-02-01

    The extraordinary properties demonstrated for graphene and graphene-related materials can be fully exploited when a large-scale fabrication procedure is made available. Chemical vapor deposition (CVD) of graphene on Cu and Ni substrates is one of the most promising procedures to synthesize large-area and good quality graphene films. Parallel to the fabrication process, a large-scale quality monitoring technique is equally crucial. We demonstrate here a rapid and simple methodology that is able to probe the effectiveness of the growth process over a large substrate area for both Ni and Cu substrates. This method is based on inherent electrochemical signals generated by the underlying metal catalysts when fractures or discontinuities of the graphene film are present. The method can be applied immediately after the CVD growth process without the need for any graphene transfer step and represents a powerful quality monitoring technique for the assessment of large-scale fabrication of graphene by the CVD process.The extraordinary properties demonstrated for graphene and graphene-related materials can be fully exploited when a large-scale fabrication procedure is made available. Chemical vapor deposition (CVD) of graphene on Cu and Ni substrates is one of the most promising procedures to synthesize large-area and good quality graphene films. Parallel to the fabrication process, a large-scale quality monitoring technique is equally crucial. We demonstrate here a rapid and simple methodology that is able to probe the effectiveness of the growth process over a large substrate area for both Ni and Cu substrates. This method is based on inherent electrochemical signals generated by the underlying metal catalysts when fractures or discontinuities of the graphene film are present. The method can be applied immediately after the CVD growth process without the need for any graphene transfer step and represents a powerful quality monitoring technique for the assessment of large-scale

  8. The Large Scale Synthesis of Aligned Plate Nanostructures.

    PubMed

    Zhou, Yang; Nash, Philip; Liu, Tian; Zhao, Naiqin; Zhu, Shengli

    2016-01-01

    We propose a novel technique for the large-scale synthesis of aligned-plate nanostructures that are self-assembled and self-supporting. The synthesis technique involves developing nanoscale two-phase microstructures through discontinuous precipitation followed by selective etching to remove one of the phases. The method may be applied to any alloy system in which the discontinuous precipitation transformation goes to completion. The resulting structure may have many applications in catalysis, filtering and thermal management depending on the phase selection and added functionality through chemical reaction with the retained phase. The synthesis technique is demonstrated using the discontinuous precipitation of a γ' phase, (Ni, Co)3Al, followed by selective dissolution of the γ matrix phase. The production of the nanostructure requires heat treatments on the order of minutes and can be performed on a large scale making this synthesis technique of great economic potential. PMID:27439672

  9. The Large Scale Synthesis of Aligned Plate Nanostructures

    PubMed Central

    Zhou, Yang; Nash, Philip; Liu, Tian; Zhao, Naiqin; Zhu, Shengli

    2016-01-01

    We propose a novel technique for the large-scale synthesis of aligned-plate nanostructures that are self-assembled and self-supporting. The synthesis technique involves developing nanoscale two-phase microstructures through discontinuous precipitation followed by selective etching to remove one of the phases. The method may be applied to any alloy system in which the discontinuous precipitation transformation goes to completion. The resulting structure may have many applications in catalysis, filtering and thermal management depending on the phase selection and added functionality through chemical reaction with the retained phase. The synthesis technique is demonstrated using the discontinuous precipitation of a γ′ phase, (Ni, Co)3Al, followed by selective dissolution of the γ matrix phase. The production of the nanostructure requires heat treatments on the order of minutes and can be performed on a large scale making this synthesis technique of great economic potential. PMID:27439672

  10. The Large Scale Synthesis of Aligned Plate Nanostructures

    NASA Astrophysics Data System (ADS)

    Zhou, Yang; Nash, Philip; Liu, Tian; Zhao, Naiqin; Zhu, Shengli

    2016-07-01

    We propose a novel technique for the large-scale synthesis of aligned-plate nanostructures that are self-assembled and self-supporting. The synthesis technique involves developing nanoscale two-phase microstructures through discontinuous precipitation followed by selective etching to remove one of the phases. The method may be applied to any alloy system in which the discontinuous precipitation transformation goes to completion. The resulting structure may have many applications in catalysis, filtering and thermal management depending on the phase selection and added functionality through chemical reaction with the retained phase. The synthesis technique is demonstrated using the discontinuous precipitation of a γ‧ phase, (Ni, Co)3Al, followed by selective dissolution of the γ matrix phase. The production of the nanostructure requires heat treatments on the order of minutes and can be performed on a large scale making this synthesis technique of great economic potential.

  11. Large scale processes in the solar nebula.

    NASA Astrophysics Data System (ADS)

    Boss, A. P.

    Most proposed chondrule formation mechanisms involve processes occurring inside the solar nebula, so the large scale (roughly 1 to 10 AU) structure of the nebula is of general interest for any chrondrule-forming mechanism. Chondrules and Ca, Al-rich inclusions (CAIs) might also have been formed as a direct result of the large scale structure of the nebula, such as passage of material through high temperature regions. While recent nebula models do predict the existence of relatively hot regions, the maximum temperatures in the inner planet region may not be high enough to account for chondrule or CAI thermal processing, unless the disk mass is considerably greater than the minimum mass necessary to restore the planets to solar composition. Furthermore, it does not seem to be possible to achieve both rapid heating and rapid cooling of grain assemblages in such a large scale furnace. However, if the accretion flow onto the nebula surface is clumpy, as suggested by observations of variability in young stars, then clump-disk impacts might be energetic enough to launch shock waves which could propagate through the nebula to the midplane, thermally processing any grain aggregates they encounter, and leaving behind a trail of chondrules.

  12. Chemical synthesis and modification of target phases of chalcogenide nanomaterials

    NASA Astrophysics Data System (ADS)

    Sines, Ian T.

    Inorganic nanoparticles have been at the forefront of materials research in recent years due to their utility in modern technological processes. Chalcogenide nanomaterials are of particular interest because of their wide range of desirable properties for semiconductors, magnetic devices, and energy industries. Primary factors that dictate the properties of the material are the elemental composition, crystal structure, stoichiometry, crystallite size, and particle morphology. One of the most common approaches to synthesize these materials is through solution mediated routes. This approach offers unique advantages in controlling the morphology and particle size that other methods lack. This dissertation describes our recent work on exploiting solution chemical routes to control the crystal structure and composition of chalcogenide nanomaterials. We will start by discussing solution chemistry routes to synthesize non-equilibrium phases of chaclogenide nanomaterials. By using low-temperature bottom-up techniques it is possible to trap kinetically stable phases that cannot be accessed using traditional high-temperature techniques. We used solution chemistry to synthesize and characterize, for the first time, wurtzite-type MnSe. Wurtzite-type MnSe is the end-member of the highly investigated ZnxMn1-xSe solid solution, a classic magnetic semiconductor system. We will then discuss PbO-type FeS, another non-equilibrium phase that is isostructural with the superconducting phase of FeSe. We synthesized phase-pure PbO-type FeS using a low-temperature solvothermal route. We will then discuss the post-synthetic modification of chalcogenides nanomaterials. By exploiting the solubility of Se and S in tri-n-octylphosphine we can selectively extract the chalcogen from preformed chalcogenide nanomaterials. This gives chemists a technique for purification and phase-targeting of particular chalcogenide phases. This method can be modified to facilitate anion exchange. When Te is

  13. Large-scale quantification of CVD graphene surface coverage.

    PubMed

    Ambrosi, Adriano; Bonanni, Alessandra; Sofer, Zdeněk; Pumera, Martin

    2013-03-21

    The extraordinary properties demonstrated for graphene and graphene-related materials can be fully exploited when a large-scale fabrication procedure is made available. Chemical vapor deposition (CVD) of graphene on Cu and Ni substrates is one of the most promising procedures to synthesize large-area and good quality graphene films. Parallel to the fabrication process, a large-scale quality monitoring technique is equally crucial. We demonstrate here a rapid and simple methodology that is able to probe the effectiveness of the growth process over a large substrate area for both Ni and Cu substrates. This method is based on inherent electrochemical signals generated by the underlying metal catalysts when fractures or discontinuities of the graphene film are present. The method can be applied immediately after the CVD growth process without the need for any graphene transfer step and represents a powerful quality monitoring technique for the assessment of large-scale fabrication of graphene by the CVD process. PMID:23396554

  14. Large-Scale PV Integration Study

    SciTech Connect

    Lu, Shuai; Etingov, Pavel V.; Diao, Ruisheng; Ma, Jian; Samaan, Nader A.; Makarov, Yuri V.; Guo, Xinxin; Hafen, Ryan P.; Jin, Chunlian; Kirkham, Harold; Shlatz, Eugene; Frantzis, Lisa; McClive, Timothy; Karlson, Gregory; Acharya, Dhruv; Ellis, Abraham; Stein, Joshua; Hansen, Clifford; Chadliev, Vladimir; Smart, Michael; Salgo, Richard; Sorensen, Rahn; Allen, Barbara; Idelchik, Boris

    2011-07-29

    This research effort evaluates the impact of large-scale photovoltaic (PV) and distributed generation (DG) output on NV Energy’s electric grid system in southern Nevada. It analyzes the ability of NV Energy’s generation to accommodate increasing amounts of utility-scale PV and DG, and the resulting cost of integrating variable renewable resources. The study was jointly funded by the United States Department of Energy and NV Energy, and conducted by a project team comprised of industry experts and research scientists from Navigant Consulting Inc., Sandia National Laboratories, Pacific Northwest National Laboratory and NV Energy.

  15. Large-scale planar lightwave circuits

    NASA Astrophysics Data System (ADS)

    Bidnyk, Serge; Zhang, Hua; Pearson, Matt; Balakrishnan, Ashok

    2011-01-01

    By leveraging advanced wafer processing and flip-chip bonding techniques, we have succeeded in hybrid integrating a myriad of active optical components, including photodetectors and laser diodes, with our planar lightwave circuit (PLC) platform. We have combined hybrid integration of active components with monolithic integration of other critical functions, such as diffraction gratings, on-chip mirrors, mode-converters, and thermo-optic elements. Further process development has led to the integration of polarization controlling functionality. Most recently, all these technological advancements have been combined to create large-scale planar lightwave circuits that comprise hundreds of optical elements integrated on chips less than a square inch in size.

  16. Neutrinos and large-scale structure

    SciTech Connect

    Eisenstein, Daniel J.

    2015-07-15

    I review the use of cosmological large-scale structure to measure properties of neutrinos and other relic populations of light relativistic particles. With experiments to measure the anisotropies of the cosmic microwave anisotropies and the clustering of matter at low redshift, we now have securely measured a relativistic background with density appropriate to the cosmic neutrino background. Our limits on the mass of the neutrino continue to shrink. Experiments coming in the next decade will greatly improve the available precision on searches for the energy density of novel relativistic backgrounds and the mass of neutrinos.

  17. Experimental Simulations of Large-Scale Collisions

    NASA Technical Reports Server (NTRS)

    Housen, Kevin R.

    2002-01-01

    This report summarizes research on the effects of target porosity on the mechanics of impact cratering. Impact experiments conducted on a centrifuge provide direct simulations of large-scale cratering on porous asteroids. The experiments show that large craters in porous materials form mostly by compaction, with essentially no deposition of material into the ejecta blanket that is a signature of cratering in less-porous materials. The ratio of ejecta mass to crater mass is shown to decrease with increasing crater size or target porosity. These results are consistent with the observation that large closely-packed craters on asteroid Mathilde appear to have formed without degradation to earlier craters.

  18. Colloquium: Large scale simulations on GPU clusters

    NASA Astrophysics Data System (ADS)

    Bernaschi, Massimo; Bisson, Mauro; Fatica, Massimiliano

    2015-06-01

    Graphics processing units (GPU) are currently used as a cost-effective platform for computer simulations and big-data processing. Large scale applications require that multiple GPUs work together but the efficiency obtained with cluster of GPUs is, at times, sub-optimal because the GPU features are not exploited at their best. We describe how it is possible to achieve an excellent efficiency for applications in statistical mechanics, particle dynamics and networks analysis by using suitable memory access patterns and mechanisms like CUDA streams, profiling tools, etc. Similar concepts and techniques may be applied also to other problems like the solution of Partial Differential Equations.

  19. Nonthermal Components in the Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Miniati, Francesco

    2004-12-01

    I address the issue of nonthermal processes in the large scale structure of the universe. After reviewing the properties of cosmic shocks and their role as particle accelerators, I discuss the main observational results, from radio to γ-ray and describe the processes that are thought be responsible for the observed nonthermal emissions. Finally, I emphasize the important role of γ-ray astronomy for the progress in the field. Non detections at these photon energies have already allowed us important conclusions. Future observations will tell us more about the physics of the intracluster medium, shocks dissipation and CR acceleration.

  20. Large scale phononic metamaterials for seismic isolation

    SciTech Connect

    Aravantinos-Zafiris, N.; Sigalas, M. M.

    2015-08-14

    In this work, we numerically examine structures that could be characterized as large scale phononic metamaterials. These novel structures could have band gaps in the frequency spectrum of seismic waves when their dimensions are chosen appropriately, thus raising the belief that they could be serious candidates for seismic isolation structures. Different and easy to fabricate structures were examined made from construction materials such as concrete and steel. The well-known finite difference time domain method is used in our calculations in order to calculate the band structures of the proposed metamaterials.

  1. Chemical Posttranslational Modification with Designed Rhodium(II) Catalysts.

    PubMed

    Martin, S C; Minus, M B; Ball, Z T

    2016-01-01

    Natural enzymes use molecular recognition to perform exquisitely selective transformations on nucleic acids, proteins, and natural products. Rhodium(II) catalysts mimic this selectivity, using molecular recognition to allow selective modification of proteins with a variety of functionalized diazo reagents. The rhodium catalysts and the diazo reactivity have been successfully applied to a variety of protein folds, the chemistry succeeds in complex environments such as cell lysate, and a simple protein blot method accurately assesses modification efficiency. The studies with rhodium catalysts provide a new tool to study and probe protein-binding events, as well as a new synthetic approach to protein conjugates for medical, biochemical, or materials applications. PMID:27586326

  2. Chemical Modification of Papain and Subtilisin: An Active Site Comparison

    ERIC Educational Resources Information Center

    St-Vincent, Mireille; Dickman, Michael

    2004-01-01

    An experiment using methyle methanethiosulfonate (MMTS) and phenylmethylsulfonyl flouride (PMSF) to specifically modify the cysteine and serine residues in the active sites of papain and subtilism respectively is demonstrated. The covalent modification of these enzymes and subsequent rescue of papain shows the beginning biochemist that proteins…

  3. Effects of aluminium surface morphology and chemical modification on wettability

    NASA Astrophysics Data System (ADS)

    Rahimi, M.; Fojan, P.; Gurevich, L.; Afshari, A.

    2014-03-01

    Aluminium alloys are some of the predominant metals in industrial applications such as production of heat exchangers, heat pumps. They have high heat conductivity coupled with a low specific weight. In cold working conditions, there is a risk of frost formation on the surface of aluminium in the presence of water vapour, which can lead to the deterioration of equipment performance. This work addresses the methods of surface modification of aluminium and their effect of the underlying surface morphology and wettability, which are the important parameters for frost formation. Three groups of real-life aluminium surfaces of different morphology: unpolished aluminium, polished aluminium, and aluminium foil, were subjected to surface modification procedures which involved the formation of a layer of hydrophilic hyperbranched polyethyleneglycol via in situ polymerization, molecular vapour deposition of a monolayer of fluorinated silane, and a combination of those. The effect of these surface modification techniques on roughness and wettability of the aluminium surfaces was elucidated by ellipsometry, contact angle measurements and atomic force microscopy. We demonstrated that by employing different types of surface modifications the contact angle of water droplets on aluminium samples can be varied from 12° to more than 120°. A crossover from Cassie-Baxter to Wenzel regime upon changing the surface roughness was also observed.

  4. Large-scale Globally Propagating Coronal Waves

    NASA Astrophysics Data System (ADS)

    Warmuth, Alexander

    2015-09-01

    Large-scale, globally propagating wave-like disturbances have been observed in the solar chromosphere and by inference in the corona since the 1960s. However, detailed analysis of these phenomena has only been conducted since the late 1990s. This was prompted by the availability of high-cadence coronal imaging data from numerous spaced-based instruments, which routinely show spectacular globally propagating bright fronts. Coronal waves, as these perturbations are usually referred to, have now been observed in a wide range of spectral channels, yielding a wealth of information. Many findings have supported the "classical" interpretation of the disturbances: fast-mode MHD waves or shocks that are propagating in the solar corona. However, observations that seemed inconsistent with this picture have stimulated the development of alternative models in which "pseudo waves" are generated by magnetic reconfiguration in the framework of an expanding coronal mass ejection. This has resulted in a vigorous debate on the physical nature of these disturbances. This review focuses on demonstrating how the numerous observational findings of the last one and a half decades can be used to constrain our models of large-scale coronal waves, and how a coherent physical understanding of these disturbances is finally emerging.

  5. Local gravity and large-scale structure

    NASA Technical Reports Server (NTRS)

    Juszkiewicz, Roman; Vittorio, Nicola; Wyse, Rosemary F. G.

    1990-01-01

    The magnitude and direction of the observed dipole anisotropy of the galaxy distribution can in principle constrain the amount of large-scale power present in the spectrum of primordial density fluctuations. This paper confronts the data, provided by a recent redshift survey of galaxies detected by the IRAS satellite, with the predictions of two cosmological models with very different levels of large-scale power: the biased Cold Dark Matter dominated model (CDM) and a baryon-dominated model (BDM) with isocurvature initial conditions. Model predictions are investigated for the Local Group peculiar velocity, v(R), induced by mass inhomogeneities distributed out to a given radius, R, for R less than about 10,000 km/s. Several convergence measures for v(R) are developed, which can become powerful cosmological tests when deep enough samples become available. For the present data sets, the CDM and BDM predictions are indistinguishable at the 2 sigma level and both are consistent with observations. A promising discriminant between cosmological models is the misalignment angle between v(R) and the apex of the dipole anisotropy of the microwave background.

  6. Large-scale mass transfers related to pressure solution creep-faulting interactions in mudstones: Driving processes and impact of lithification degree

    NASA Astrophysics Data System (ADS)

    Richard, J.

    2014-02-01

    Where normal faulting is associated with PSC (Pressure Solution Creep), it generates evolutions in petrophysical properties of mudstones like chalk: decrease in reservoir qualities and transport properties in the deformed zones adjacent to the fault plane and increase (or no change) in reservoir qualities and transport properties in the outermost deformed zones. These modifications result from large-scale mass transfers linked to a transport of solutes through the pore space over distances of several grains within decimeter or larger zones (open systems at the grain scale). In the lithified mudstones, these large-scale mass transfers consist in a mass redistribution from the outermost deformed zones (mass and volume loss) to the deformed zones adjacent to the fault planes (mass gain). In the weakly lithified mudstones, the mass redistribution occurs in an opposite direction. A deeper understanding of these large-scale mass redistributions is essential because the PSC-faulting interactions and the associated petrophysical modifications can be a key topic in several geological applications (oil and gas migration and entrapment in mudstone reservoirs, anthropogenic waste storage, carbon dioxyde geosequestration). The results of two studies about mass transfers and volume changes induced by natural fault systems in “white chalk” allowed to point out that two driving processes control the large-scale mass transfers during PSC-faulting interactions: the advective mass transport related to pore fluid flows and the large-scale diffusive mass transport linked to chemical potential gradients. The present contribution also highlights that the lithification degree of the host material plays a key role in the large-scale mass transfers related to PSC-faulting interactions by controlling (1) the spatial distribution of voids induced by the deformation, (2) the particle displacement on the fault plane and in the adjacent zones and (3) the petrophysical properties of the host

  7. Effects of small-scale chemical reactions between supercritical CO2 and arkosic sandstone on large-scale permeability fields: An experimental study with implications for geologic carbon sequestration

    NASA Astrophysics Data System (ADS)

    Luhmann, A. J.; Ding, K.; Saar, M. O.; Seyfried, W. E.

    2011-12-01

    During geologic carbon sequestration, small, pore-scale changes in mineralogy due to dissolution and precipitation reactions can modify bulk porosity. Porosity/permeability relationships are then typically used to infer large-scale permeability field changes. However, these relationships have limited use because they do not account for changes in pore geometry. Therefore, in connection with a DOE sponsored program, involving CO2 sequestration with geothermal energy usage, we constructed a novel hydrothermal flow system that allows simultaneous determination of changes in fluid chemistry and associated changes in permeability at elevated temperatures and high CO2 pressure. Initial experiments were conducted with an arkosic sandstone core of the Eau Claire Formation from southeastern Minnesota. The core was disaggregated and then wet sieved to yield a grain size distribution of 90-120 μm that was used to fill the Teflon sleeve held within the stainless steel pressure vessel. Initial water chemistry consisted of CO2 dissolved in deionized water. Outlet pressure was set to 11 MPa, and confinement pressure was 20 MPa. Flow rates produced inlet pressures between these two extremes, allowing CO2 solubility up to 1.1 mol/kg water. Rates of fluid flow ranged from 0.04 to 1.5 mL/min at a temperature of 21°C over the course of 33 days. Based on these data, the in-situ permeability of ~1E-14 to 9E-14 m2 for the arkosic sandstone was calculated. The reaction cell temperature was then increased to 50°C, and eventually 100°C. Each temperature step was associated with a sharp decrease in permeability, such that at 100°C the permeability had decreased by approximately three orders of magnitude from the starting condition. Fluid samples indicate release of dissolved Na, Ca, Mg, K, Al, SiO2, and Cl from minerals in the core, suggesting dissolution of primary mineral components. Charge balance constraints indicate a pH of approximately 4.2 at the highest temperature run condition

  8. Manipulating I V Characteristics of a Molecular Switch with Chemical Modifications

    SciTech Connect

    Palma, Julio L.; Cao, Chao; Zhang, Xiaoguang; Krstic, Predrag S; Krause, Jeffrey L.; Cheng, Hai-Ping

    2010-01-01

    We present a study of the effects of chemical modifications on the electron transport properties of the azobenzene molecule, which has been proposed as a component of a light-driven molecular switch. This molecule has two stable conformations (cis and trans) in the electronic ground state, with considerable differences in conductance. The electron transport properties were calculated using first-principles methods combining nonequilibrium Green s function techniques with density functional theory. Chemical modifications of the azobenzene consist of incorporation of electron-donating and electron-withdrawing groups in meta and ortho positions with respect to the azo group. The results show that the transport properties in electronic devices at the molecular level can be manipulated, enhanced, or suppressed by a careful consideration of the effects of chemical modification, and such modifications become crucial in optimizing the electron transport properties of chemical structures.

  9. Manipulating I-V Characteristics of a Molecular Switch with Chemical Modifications

    SciTech Connect

    Palma, Julio L.; Cao, Chao; Zhang, X.-G.; Krstic, Predrag S; Krause, Jeffrey L.; Cheng, Hai-Ping

    2010-01-01

    We present a study of the effects of chemical modifications on the electron transport properties of the azobenzene molecule, which has been proposed as a component of a light-driven molecular switch. This molecule has two stable conformations (cis and trans) in the electronic ground state, with considerable differences in conductance. The electron transport properties were calculated using first-principles methods combining nonequilibrium Green s function techniques with density functional theory. Chemical modifications of the azobenzene consist of incorporation of electron-donating and electron-withdrawing groups in meta and ortho positions with respect to the azo group. The results show that the transport properties in electronic devices at the molecular level can be manipulated, enhanced, or suppressed by a careful consideration of the effects of chemical modification, and such modifications become crucial in optimizing the electron transport properties of chemical structures.

  10. Chemical Methods for the Synthesis and Modification of Neoclerodane Diterpenes

    PubMed Central

    Lozama, Anthony; Prisinzano, Thomas E.

    2009-01-01

    Diterpenes are a structural class of molecules that are derived from four isoprene subunits and are widespread throughout nature. A number of neoclerodane diterpenes have been found to have biological activity but a limited number of chemical investigations have been conducted. Recently, the neoclerodane diterpene, salvinorin A (12) has been investigated due to its unique pharmacological profile. This review will discuss the chemical methods used to chemically modify and synthesize 12. PMID:19679471

  11. Large-scale genotoxicity assessments in the marine environment.

    PubMed

    Hose, J E

    1994-12-01

    There are a number of techniques for detecting genotoxicity in the marine environment, and many are applicable to large-scale field assessments. Certain tests can be used to evaluate responses in target organisms in situ while others utilize surrogate organisms exposed to field samples in short-term laboratory bioassays. Genotoxicity endpoints appear distinct from traditional toxicity endpoints, but some have chemical or ecotoxicologic correlates. One versatile end point, the frequency of anaphase aberrations, has been used in several large marine assessments to evaluate genotoxicity in the New York Bight, in sediment from San Francisco Bay, and following the Exxon Valdez oil spill. PMID:7713029

  12. Synthesis and sensing application of large scale bilayer graphene

    NASA Astrophysics Data System (ADS)

    Hong, Sung Ju; Yoo, Jung Hoon; Baek, Seung Jae; Park, Yung Woo

    2012-02-01

    We have synthesized large scale bilayer graphene by using Chemical Vapor Deposition (CVD) in atmospheric pressure. Bilayer graphene was grown by using CH4, H2 and Ar gases. The growth temperature was 1050^o. Conventional FET measurement shows ambipolar transfer characteristics. Results of Raman spectroscopy, Atomic Force microscope (AFM) and Transmission Electron Microscope (TEM) indicate the film is bilayer graphene. Especially, adlayer structure which interrupt uniformity was reduced in low methane flow condition. Furthermore, large size CVD bilayer graphene film can be investigated to apply sensor devices. By using conventional photolithography process, we have fabricated device array structure and studied sensing behavior.

  13. Large-scale genotoxicity assessments in the marine environment

    SciTech Connect

    Hose, J.E.

    1994-12-01

    There are a number of techniques for detecting genotoxicity in the marine environment, and many are applicable to large-scale field assessments. Certain tests can be used to evaluate responses in target organisms in situ while others utilize surrogate organisms exposed to field samples in short-term laboratory bioassays. Genotoxicity endpoints appear distinct from traditional toxicity endpoints, but some have chemical or ecotoxicologic correlates. One versatile end point, the frequency of anaphase aberrations, has been used in several large marine assessments to evaluate genotoxicity in the New York Bight, in sediment from San Francisco Bay, and following the Exxon Valdez oil spill. 31 refs., 2 tabs.

  14. Chemical TOPAZ: Modifications to the heat transfer code TOPAZ: The addition of chemical reaction kinetics and chemical mixtures

    SciTech Connect

    Nichols, A.L. III.

    1990-06-07

    This is a report describing the modifications which have been made to the heat flow code TOPAZ to allow the inclusion of thermally controlled chemical kinetics. This report is broken into parts. The first part is an introduction to the general assumptions and theoretical underpinning that were used to develop the model. The second section describes the changes that have been implemented into the code. The third section is the users manual for the input for the code. The fourth section is a compilation of hints, common errors, and things to be aware of while you are getting started. The fifth section gives a sample problem using the new code. This manual addenda is written with the presumption that most readers are not fluent with chemical concepts. Therefore, we shall in this section endeavor to describe the requirements that must be met before chemistry can occur and how we have modeled the chemistry in the code.

  15. Effects of heat release on the large-scale structure in turbulent mixing layers

    NASA Astrophysics Data System (ADS)

    McMurtry, P. A.; Riley, J. J.; Metcalfe, R. W.

    1989-02-01

    The effects of chemical heat release on the large-scale structure in a chemically reacting turbulent mixing layer have been studied using three-dimensional time-dependent simulations. Moderate heat release is found to slow the development of the large-scale structures and to shift their wavelengths to larger scales. The results suggest that previously unexplained anomalies observed in the mean velocity profiles of reacting jets and mixing layers may be the result of vorticity generation by baroclinic torques.

  16. Chemical Modifications that Affect Nutritional and Functional Properties of Proteins.

    ERIC Educational Resources Information Center

    Richardson, T.; Kester, J. J.

    1984-01-01

    Discusses chemical alterations of selected amino acids resulting from environmental effects (photooxidations, pH extremes, thermally induced effects). Also dicusses use of intentional chemical derivatizations of various functional groups in amino acid residue side chains and how recombinant DNA techniques might be useful in structure/function…

  17. An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database.

    PubMed

    Kobayashi, Naohiro; Harano, Yoko; Tochio, Naoya; Nakatani, Eiichi; Kigawa, Takanori; Yokoyama, Shigeyuki; Mading, Steve; Ulrich, Eldon L; Markley, John L; Akutsu, Hideo; Fujiwara, Toshimichi

    2012-08-01

    Biomolecular NMR chemical shift data are key information for the functional analysis of biomolecules and the development of new techniques for NMR studies utilizing chemical shift statistical information. Structural genomics projects are major contributors to the accumulation of protein chemical shift information. The management of the large quantities of NMR data generated by each project in a local database and the transfer of the data to the public databases are still formidable tasks because of the complicated nature of NMR data. Here we report an automated and efficient system developed for the deposition and annotation of a large number of data sets including (1)H, (13)C and (15)N resonance assignments used for the structure determination of proteins. We have demonstrated the feasibility of our system by applying it to over 600 entries from the internal database generated by the RIKEN Structural Genomics/Proteomics Initiative (RSGI) to the public database, BioMagResBank (BMRB). We have assessed the quality of the deposited chemical shifts by comparing them with those predicted from the PDB coordinate entry for the corresponding protein. The same comparison for other matched BMRB/PDB entries deposited from 2001-2011 has been carried out and the results suggest that the RSGI entries greatly improved the quality of the BMRB database. Since the entries include chemical shifts acquired under strikingly similar experimental conditions, these NMR data can be expected to be a promising resource to improve current technologies as well as to develop new NMR methods for protein studies. PMID:22689068

  18. Large scale water lens for solar concentration.

    PubMed

    Mondol, A S; Vogel, B; Bastian, G

    2015-06-01

    Properties of large scale water lenses for solar concentration were investigated. These lenses were built from readily available materials, normal tap water and hyper-elastic linear low density polyethylene foil. Exposed to sunlight, the focal lengths and light intensities in the focal spot were measured and calculated. Their optical properties were modeled with a raytracing software based on the lens shape. We have achieved a good match of experimental and theoretical data by considering wavelength dependent concentration factor, absorption and focal length. The change in light concentration as a function of water volume was examined via the resulting load on the foil and the corresponding change of shape. The latter was extracted from images and modeled by a finite element simulation. PMID:26072893

  19. Large Scale Quantum Simulations of Nuclear Pasta

    NASA Astrophysics Data System (ADS)

    Fattoyev, Farrukh J.; Horowitz, Charles J.; Schuetrumpf, Bastian

    2016-03-01

    Complex and exotic nuclear geometries collectively referred to as ``nuclear pasta'' are expected to naturally exist in the crust of neutron stars and in supernovae matter. Using a set of self-consistent microscopic nuclear energy density functionals we present the first results of large scale quantum simulations of pasta phases at baryon densities 0 . 03 < ρ < 0 . 10 fm-3, proton fractions 0 . 05

  20. Large-scale simulations of reionization

    SciTech Connect

    Kohler, Katharina; Gnedin, Nickolay Y.; Hamilton, Andrew J.S.; /JILA, Boulder

    2005-11-01

    We use cosmological simulations to explore the large-scale effects of reionization. Since reionization is a process that involves a large dynamic range--from galaxies to rare bright quasars--we need to be able to cover a significant volume of the universe in our simulation without losing the important small scale effects from galaxies. Here we have taken an approach that uses clumping factors derived from small scale simulations to approximate the radiative transfer on the sub-cell scales. Using this technique, we can cover a simulation size up to 1280h{sup -1} Mpc with 10h{sup -1} Mpc cells. This allows us to construct synthetic spectra of quasars similar to observed spectra of SDSS quasars at high redshifts and compare them to the observational data. These spectra can then be analyzed for HII region sizes, the presence of the Gunn-Peterson trough, and the Lyman-{alpha} forest.

  1. Large-scale databases of proper names.

    PubMed

    Conley, P; Burgess, C; Hage, D

    1999-05-01

    Few tools for research in proper names have been available--specifically, there is no large-scale corpus of proper names. Two corpora of proper names were constructed, one based on U.S. phone book listings, the other derived from a database of Usenet text. Name frequencies from both corpora were compared with human subjects' reaction times (RTs) to the proper names in a naming task. Regression analysis showed that the Usenet frequencies contributed to predictions of human RT, whereas phone book frequencies did not. In addition, semantic neighborhood density measures derived from the HAL corpus were compared with the subjects' RTs and found to be a better predictor of RT than was frequency in either corpus. These new corpora are freely available on line for download. Potentials for these corpora range from using the names as stimuli in experiments to using the corpus data in software applications. PMID:10495803

  2. Estimation of large-scale dimension densities.

    PubMed

    Raab, C; Kurths, J

    2001-07-01

    We propose a technique to calculate large-scale dimension densities in both higher-dimensional spatio-temporal systems and low-dimensional systems from only a few data points, where known methods usually have an unsatisfactory scaling behavior. This is mainly due to boundary and finite-size effects. With our rather simple method, we normalize boundary effects and get a significant correction of the dimension estimate. This straightforward approach is based on rather general assumptions. So even weak coherent structures obtained from small spatial couplings can be detected with this method, which is impossible by using the Lyapunov-dimension density. We demonstrate the efficiency of our technique for coupled logistic maps, coupled tent maps, the Lorenz attractor, and the Roessler attractor. PMID:11461376

  3. The challenge of large-scale structure

    NASA Astrophysics Data System (ADS)

    Gregory, S. A.

    1996-03-01

    The tasks that I have assumed for myself in this presentation include three separate parts. The first, appropriate to the particular setting of this meeting, is to review the basic work of the founding of this field; the appropriateness comes from the fact that W. G. Tifft made immense contributions that are not often realized by the astronomical community. The second task is to outline the general tone of the observational evidence for large scale structures. (Here, in particular, I cannot claim to be complete. I beg forgiveness from any workers who are left out by my oversight for lack of space and time.) The third task is to point out some of the major aspects of the field that may represent the clues by which some brilliant sleuth will ultimately figure out how galaxies formed.

  4. Engineering management of large scale systems

    NASA Technical Reports Server (NTRS)

    Sanders, Serita; Gill, Tepper L.; Paul, Arthur S.

    1989-01-01

    The organization of high technology and engineering problem solving, has given rise to an emerging concept. Reasoning principles for integrating traditional engineering problem solving with system theory, management sciences, behavioral decision theory, and planning and design approaches can be incorporated into a methodological approach to solving problems with a long range perspective. Long range planning has a great potential to improve productivity by using a systematic and organized approach. Thus, efficiency and cost effectiveness are the driving forces in promoting the organization of engineering problems. Aspects of systems engineering that provide an understanding of management of large scale systems are broadly covered here. Due to the focus and application of research, other significant factors (e.g., human behavior, decision making, etc.) are not emphasized but are considered.

  5. Large scale cryogenic fluid systems testing

    NASA Technical Reports Server (NTRS)

    1992-01-01

    NASA Lewis Research Center's Cryogenic Fluid Systems Branch (CFSB) within the Space Propulsion Technology Division (SPTD) has the ultimate goal of enabling the long term storage and in-space fueling/resupply operations for spacecraft and reusable vehicles in support of space exploration. Using analytical modeling, ground based testing, and on-orbit experimentation, the CFSB is studying three primary categories of fluid technology: storage, supply, and transfer. The CFSB is also investigating fluid handling, advanced instrumentation, and tank structures and materials. Ground based testing of large-scale systems is done using liquid hydrogen as a test fluid at the Cryogenic Propellant Tank Facility (K-site) at Lewis' Plum Brook Station in Sandusky, Ohio. A general overview of tests involving liquid transfer, thermal control, pressure control, and pressurization is given.

  6. Batteries for Large Scale Energy Storage

    SciTech Connect

    Soloveichik, Grigorii L.

    2011-07-15

    In recent years, with the deployment of renewable energy sources, advances in electrified transportation, and development in smart grids, the markets for large-scale stationary energy storage have grown rapidly. Electrochemical energy storage methods are strong candidate solutions due to their high energy density, flexibility, and scalability. This review provides an overview of mature and emerging technologies for secondary and redox flow batteries. New developments in the chemistry of secondary and flow batteries as well as regenerative fuel cells are also considered. Advantages and disadvantages of current and prospective electrochemical energy storage options are discussed. The most promising technologies in the short term are high-temperature sodium batteries with β”-alumina electrolyte, lithium-ion batteries, and flow batteries. Regenerative fuel cells and lithium metal batteries with high energy density require further research to become practical.

  7. Grid sensitivity capability for large scale structures

    NASA Technical Reports Server (NTRS)

    Nagendra, Gopal K.; Wallerstein, David V.

    1989-01-01

    The considerations and the resultant approach used to implement design sensitivity capability for grids into a large scale, general purpose finite element system (MSC/NASTRAN) are presented. The design variables are grid perturbations with a rather general linking capability. Moreover, shape and sizing variables may be linked together. The design is general enough to facilitate geometric modeling techniques for generating design variable linking schemes in an easy and straightforward manner. Test cases have been run and validated by comparison with the overall finite difference method. The linking of a design sensitivity capability for shape variables in MSC/NASTRAN with an optimizer would give designers a powerful, automated tool to carry out practical optimization design of real life, complicated structures.

  8. Large-Scale Astrophysical Visualization on Smartphones

    NASA Astrophysics Data System (ADS)

    Becciani, U.; Massimino, P.; Costa, A.; Gheller, C.; Grillo, A.; Krokos, M.; Petta, C.

    2011-07-01

    Nowadays digital sky surveys and long-duration, high-resolution numerical simulations using high performance computing and grid systems produce multidimensional astrophysical datasets in the order of several Petabytes. Sharing visualizations of such datasets within communities and collaborating research groups is of paramount importance for disseminating results and advancing astrophysical research. Moreover educational and public outreach programs can benefit greatly from novel ways of presenting these datasets by promoting understanding of complex astrophysical processes, e.g., formation of stars and galaxies. We have previously developed VisIVO Server, a grid-enabled platform for high-performance large-scale astrophysical visualization. This article reviews the latest developments on VisIVO Web, a custom designed web portal wrapped around VisIVO Server, then introduces VisIVO Smartphone, a gateway connecting VisIVO Web and data repositories for mobile astrophysical visualization. We discuss current work and summarize future developments.

  9. The XMM Large Scale Structure Survey

    NASA Astrophysics Data System (ADS)

    Pierre, Marguerite

    2005-10-01

    We propose to complete, by an additional 5 deg2, the XMM-LSS Survey region overlying the Spitzer/SWIRE field. This field already has CFHTLS and Integral coverage, and will encompass about 10 deg2. The resulting multi-wavelength medium-depth survey, which complements XMM and Chandra deep surveys, will provide a unique view of large-scale structure over a wide range of redshift, and will show active galaxies in the full range of environments. The complete coverage by optical and IR surveys provides high-quality photometric redshifts, so that cosmological results can quickly be extracted. In the spirit of a Legacy survey, we will make the raw X-ray data immediately public. Multi-band catalogues and images will also be made available on short time scales.

  10. Estimation of large-scale dimension densities

    NASA Astrophysics Data System (ADS)

    Raab, Corinna; Kurths, Jürgen

    2001-07-01

    We propose a technique to calculate large-scale dimension densities in both higher-dimensional spatio-temporal systems and low-dimensional systems from only a few data points, where known methods usually have an unsatisfactory scaling behavior. This is mainly due to boundary and finite-size effects. With our rather simple method, we normalize boundary effects and get a significant correction of the dimension estimate. This straightforward approach is based on rather general assumptions. So even weak coherent structures obtained from small spatial couplings can be detected with this method, which is impossible by using the Lyapunov-dimension density. We demonstrate the efficiency of our technique for coupled logistic maps, coupled tent maps, the Lorenz attractor, and the Roessler attractor.

  11. Large-Scale Organization of Glycosylation Networks

    NASA Astrophysics Data System (ADS)

    Kim, Pan-Jun; Lee, Dong-Yup; Jeong, Hawoong

    2009-03-01

    Glycosylation is a highly complex process to produce a diverse repertoire of cellular glycans that are frequently attached to proteins and lipids. Glycans participate in fundamental biological processes including molecular trafficking and clearance, cell proliferation and apoptosis, developmental biology, immune response, and pathogenesis. N-linked glycans found on proteins are formed by sequential attachments of monosaccharides with the help of a relatively small number of enzymes. Many of these enzymes can accept multiple N-linked glycans as substrates, thus generating a large number of glycan intermediates and their intermingled pathways. Motivated by the quantitative methods developed in complex network research, we investigate the large-scale organization of such N-glycosylation pathways in a mammalian cell. The uncovered results give the experimentally-testable predictions for glycosylation process, and can be applied to the engineering of therapeutic glycoproteins.

  12. Large-scale sequential quadratic programming algorithms

    SciTech Connect

    Eldersveld, S.K.

    1992-09-01

    The problem addressed is the general nonlinear programming problem: finding a local minimizer for a nonlinear function subject to a mixture of nonlinear equality and inequality constraints. The methods studied are in the class of sequential quadratic programming (SQP) algorithms, which have previously proved successful for problems of moderate size. Our goal is to devise an SQP algorithm that is applicable to large-scale optimization problems, using sparse data structures and storing less curvature information but maintaining the property of superlinear convergence. The main features are: 1. The use of a quasi-Newton approximation to the reduced Hessian of the Lagrangian function. Only an estimate of the reduced Hessian matrix is required by our algorithm. The impact of not having available the full Hessian approximation is studied and alternative estimates are constructed. 2. The use of a transformation matrix Q. This allows the QP gradient to be computed easily when only the reduced Hessian approximation is maintained. 3. The use of a reduced-gradient form of the basis for the null space of the working set. This choice of basis is more practical than an orthogonal null-space basis for large-scale problems. The continuity condition for this choice is proven. 4. The use of incomplete solutions of quadratic programming subproblems. Certain iterates generated by an active-set method for the QP subproblem are used in place of the QP minimizer to define the search direction for the nonlinear problem. An implementation of the new algorithm has been obtained by modifying the code MINOS. Results and comparisons with MINOS and NPSOL are given for the new algorithm on a set of 92 test problems.

  13. Supporting large-scale computational science

    SciTech Connect

    Musick, R

    1998-10-01

    A study has been carried out to determine the feasibility of using commercial database management systems (DBMSs) to support large-scale computational science. Conventional wisdom in the past has been that DBMSs are too slow for such data. Several events over the past few years have muddied the clarity of this mindset: 1. 2. 3. 4. Several commercial DBMS systems have demonstrated storage and ad-hoc quer access to Terabyte data sets. Several large-scale science teams, such as EOSDIS [NAS91], high energy physics [MM97] and human genome [Kin93] have adopted (or make frequent use of) commercial DBMS systems as the central part of their data management scheme. Several major DBMS vendors have introduced their first object-relational products (ORDBMSs), which have the potential to support large, array-oriented data. In some cases, performance is a moot issue. This is true in particular if the performance of legacy applications is not reduced while new, albeit slow, capabilities are added to the system. The basic assessment is still that DBMSs do not scale to large computational data. However, many of the reasons have changed, and there is an expiration date attached to that prognosis. This document expands on this conclusion, identifies the advantages and disadvantages of various commercial approaches, and describes the studies carried out in exploring this area. The document is meant to be brief, technical and informative, rather than a motivational pitch. The conclusions within are very likely to become outdated within the next 5-7 years, as market forces will have a significant impact on the state of the art in scientific data management over the next decade.

  14. Supporting large-scale computational science

    SciTech Connect

    Musick, R., LLNL

    1998-02-19

    Business needs have driven the development of commercial database systems since their inception. As a result, there has been a strong focus on supporting many users, minimizing the potential corruption or loss of data, and maximizing performance metrics like transactions per second, or TPC-C and TPC-D results. It turns out that these optimizations have little to do with the needs of the scientific community, and in particular have little impact on improving the management and use of large-scale high-dimensional data. At the same time, there is an unanswered need in the scientific community for many of the benefits offered by a robust DBMS. For example, tying an ad-hoc query language such as SQL together with a visualization toolkit would be a powerful enhancement to current capabilities. Unfortunately, there has been little emphasis or discussion in the VLDB community on this mismatch over the last decade. The goal of the paper is to identify the specific issues that need to be resolved before large-scale scientific applications can make use of DBMS products. This topic is addressed in the context of an evaluation of commercial DBMS technology applied to the exploration of data generated by the Department of Energy`s Accelerated Strategic Computing Initiative (ASCI). The paper describes the data being generated for ASCI as well as current capabilities for interacting with and exploring this data. The attraction of applying standard DBMS technology to this domain is discussed, as well as the technical and business issues that currently make this an infeasible solution.

  15. Introducing Large-Scale Innovation in Schools

    NASA Astrophysics Data System (ADS)

    Sotiriou, Sofoklis; Riviou, Katherina; Cherouvis, Stephanos; Chelioti, Eleni; Bogner, Franz X.

    2016-08-01

    Education reform initiatives tend to promise higher effectiveness in classrooms especially when emphasis is given to e-learning and digital resources. Practical changes in classroom realities or school organization, however, are lacking. A major European initiative entitled Open Discovery Space (ODS) examined the challenge of modernizing school education via a large-scale implementation of an open-scale methodology in using technology-supported innovation. The present paper describes this innovation scheme which involved schools and teachers all over Europe, embedded technology-enhanced learning into wider school environments and provided training to teachers. Our implementation scheme consisted of three phases: (1) stimulating interest, (2) incorporating the innovation into school settings and (3) accelerating the implementation of the innovation. The scheme's impact was monitored for a school year using five indicators: leadership and vision building, ICT in the curriculum, development of ICT culture, professional development support, and school resources and infrastructure. Based on about 400 schools, our study produced four results: (1) The growth in digital maturity was substantial, even for previously high scoring schools. This was even more important for indicators such as vision and leadership" and "professional development." (2) The evolution of networking is presented graphically, showing the gradual growth of connections achieved. (3) These communities became core nodes, involving numerous teachers in sharing educational content and experiences: One out of three registered users (36 %) has shared his/her educational resources in at least one community. (4) Satisfaction scores ranged from 76 % (offer of useful support through teacher academies) to 87 % (good environment to exchange best practices). Initiatives such as ODS add substantial value to schools on a large scale.

  16. Introducing Large-Scale Innovation in Schools

    NASA Astrophysics Data System (ADS)

    Sotiriou, Sofoklis; Riviou, Katherina; Cherouvis, Stephanos; Chelioti, Eleni; Bogner, Franz X.

    2016-02-01

    Education reform initiatives tend to promise higher effectiveness in classrooms especially when emphasis is given to e-learning and digital resources. Practical changes in classroom realities or school organization, however, are lacking. A major European initiative entitled Open Discovery Space (ODS) examined the challenge of modernizing school education via a large-scale implementation of an open-scale methodology in using technology-supported innovation. The present paper describes this innovation scheme which involved schools and teachers all over Europe, embedded technology-enhanced learning into wider school environments and provided training to teachers. Our implementation scheme consisted of three phases: (1) stimulating interest, (2) incorporating the innovation into school settings and (3) accelerating the implementation of the innovation. The scheme's impact was monitored for a school year using five indicators: leadership and vision building, ICT in the curriculum, development of ICT culture, professional development support, and school resources and infrastructure. Based on about 400 schools, our study produced four results: (1) The growth in digital maturity was substantial, even for previously high scoring schools. This was even more important for indicators such as vision and leadership" and "professional development." (2) The evolution of networking is presented graphically, showing the gradual growth of connections achieved. (3) These communities became core nodes, involving numerous teachers in sharing educational content and experiences: One out of three registered users (36 %) has shared his/her educational resources in at least one community. (4) Satisfaction scores ranged from 76 % (offer of useful support through teacher academies) to 87 % (good environment to exchange best practices). Initiatives such as ODS add substantial value to schools on a large scale.

  17. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

    PubMed Central

    Mathews, David H.; Disney, Matthew D.; Childs, Jessica L.; Schroeder, Susan J.; Zuker, Michael; Turner, Douglas H.

    2004-01-01

    A dynamic programming algorithm for prediction of RNA secondary structure has been revised to accommodate folding constraints determined by chemical modification and to include free energy increments for coaxial stacking of helices when they are either adjacent or separated by a single mismatch. Furthermore, free energy parameters are revised to account for recent experimental results for terminal mismatches and hairpin, bulge, internal, and multibranch loops. To demonstrate the applicability of this method, in vivo modification was performed on 5S rRNA in both Escherichia coli and Candida albicans with 1-cyclohexyl-3-(2-morpholinoethyl) carbodiimide metho-p-toluene sulfonate, dimethyl sulfate, and kethoxal. The percentage of known base pairs in the predicted structure increased from 26.3% to 86.8% for the E. coli sequence by using modification constraints. For C. albicans, the accuracy remained 87.5% both with and without modification data. On average, for these sequences and a set of 14 sequences with known secondary structure and chemical modification data taken from the literature, accuracy improves from 67% to 76%. This enhancement primarily reflects improvement for three sequences that are predicted with <40% accuracy on the basis of energetics alone. For these sequences, inclusion of chemical modification constraints improves the average accuracy from 28% to 78%. For the 11 sequences with <6% pseudoknotted base pairs, structures predicted with constraints from chemical modification contain on average 84% of known canonical base pairs. PMID:15123812

  18. Automated Sequence Preprocessing in a Large-Scale Sequencing Environment

    PubMed Central

    Wendl, Michael C.; Dear, Simon; Hodgson, Dave; Hillier, LaDeana

    1998-01-01

    A software system for transforming fragments from four-color fluorescence-based gel electrophoresis experiments into assembled sequence is described. It has been developed for large-scale processing of all trace data, including shotgun and finishing reads, regardless of clone origin. Design considerations are discussed in detail, as are programming implementation and graphic tools. The importance of input validation, record tracking, and use of base quality values is emphasized. Several quality analysis metrics are proposed and applied to sample results from recently sequenced clones. Such quantities prove to be a valuable aid in evaluating modifications of sequencing protocol. The system is in full production use at both the Genome Sequencing Center and the Sanger Centre, for which combined weekly production is ∼100,000 sequencing reads per week. PMID:9750196

  19. The Modification of Biocellular Chemical Reactions by Environmental Physicochemicals

    NASA Astrophysics Data System (ADS)

    Ishido, M.

    Environmental risk factors affect human biological system to different extent from modification of biochemical reaction to cellular catastrophe. There are considerable public concerns about electromagnetic fields and endocrine disruptors. Their risk assessments have not been fully achieved because of their scientific uncertainty: electromagnetic fields just modify the bioreaction in the restricted cells and endocrine disruptors are quite unique in that their expression is dependent on the exposure periods throughout a life. Thus, we here describe their molecular characterization to establish the new risk assessments for environmental physicochemicals.

  20. Importance of the Small-Scale Processes Melting, Plate Boundary Formation and Mineralogy on the Large-Scale, Long-Term Thermo-Chemical Evolution of Earth's Mantle-Plate System

    NASA Astrophysics Data System (ADS)

    Tackley, P.

    2015-12-01

    Seismic observations of the deep Earth reveal the presence of two large low shear velocity provinces (LLSVPs) that are typically inferred to be dense chemically-distinct material, as well as discontinuities that are typically linked to the post-perovskite (pPv) phase transition. Several possible origins of chemically-dense material have been proposed, including recycling of mid-ocean ridge basalt (MORB), primordial differentiation events, crystallisation of a basal magma ocean, or some combination of these creating a basal melange (BAM; Tackley 2012 Earth Sci. Rev.). Each of these possibilities would result in a different composition hence different mineralogy. In order to constrain this we have been running calculations of thermo-chemical mantle evolution over 4.5 billion years that include melting-induced differentiation, plate tectonics induced by strongly temperature-dependent viscosity and plastic yielding, core cooling and compressibility with reasonable assumptions about the pressure-dependence of other material properties. Some of our simulations start from a magma ocean state so initial layering is developed self-consistently. Already-published results (Nakagawa et al., 2009 GCubed, 2010 PEPI, 2012 GCubed) already indicate the importance of exact MORB composition on the amount of MORB segregating above the CMB, which in turn influences mantle thermal structure and the evolution of the core and geodynamo. In more recent results we have been additionally including primordial material. We find that melting-induced differentiation has several first-order effects on the dynamics, including (i) making plate tectonics easier (through stresses associated with lateral variations in crustal thickness) and (ii) reducing heat flux through the CMB (due to the build-up of dense material above the CMB); also (iii) tectonic mode (continuous plate tectonics, episodic lid or stagnant lid) also makes a first-order difference to mantle structure and dynamics. This emphasises

  1. Systematic large-scale secondary circulations in a regional climate model

    NASA Astrophysics Data System (ADS)

    Becker, Nico; Ulbrich, Uwe; Klein, Rupert

    2015-05-01

    Regional climate models (RCMs) are used to add the effects of nonresolved scales to coarser resolved model simulations by using a finer grid within a limited domain. We identify large-scale secondary circulations (SCs) relative to the driving global climate model (GCM) in an RCM simulation over Europe. By applying a clustering technique, we find that the SC depends on the large-scale flow prescribed by the driving GCM data. Evidence is presented that the SC is caused by the different representations of orographic effects in the RCM and the GCM. Flow modifications in the RCM caused by the Alps lead to large-scale vortices in the SC fields. These vortices are limited by the RCM boundaries, causing artificial boundary-parallel flows. The SC is associated with geopotential height and temperature anomalies between RCM and GCM and has the potential to produce systematic large-scale biases in RCMs.

  2. Gravity and large-scale nonlocal bias

    NASA Astrophysics Data System (ADS)

    Chan, Kwan Chuen; Scoccimarro, Román; Sheth, Ravi K.

    2012-04-01

    For Gaussian primordial fluctuations the relationship between galaxy and matter overdensities, bias, is most often assumed to be local at the time of observation in the large-scale limit. This hypothesis is however unstable under time evolution, we provide proofs under several (increasingly more realistic) sets of assumptions. In the simplest toy model galaxies are created locally and linearly biased at a single formation time, and subsequently move with the dark matter (no velocity bias) conserving their comoving number density (no merging). We show that, after this formation time, the bias becomes unavoidably nonlocal and nonlinear at large scales. We identify the nonlocal gravitationally induced fields in which the galaxy overdensity can be expanded, showing that they can be constructed out of the invariants of the deformation tensor (Galileons), the main signature of which is a quadrupole field in second-order perturbation theory. In addition, we show that this result persists if we include an arbitrary evolution of the comoving number density of tracers. We then include velocity bias, and show that new contributions appear; these are related to the breaking of Galilean invariance of the bias relation, a dipole field being the signature at second order. We test these predictions by studying the dependence of halo overdensities in cells of fixed dark matter density: measurements in simulations show that departures from the mean bias relation are strongly correlated with the nonlocal gravitationally induced fields identified by our formalism, suggesting that the halo distribution at the present time is indeed more closely related to the mass distribution at an earlier rather than present time. However, the nonlocality seen in the simulations is not fully captured by assuming local bias in Lagrangian space. The effects on nonlocal bias seen in the simulations are most important for the most biased halos, as expected from our predictions. Accounting for these

  3. Large-Scale Statistics for Cu Electromigration

    NASA Astrophysics Data System (ADS)

    Hauschildt, M.; Gall, M.; Hernandez, R.

    2009-06-01

    Even after the successful introduction of Cu-based metallization, the electromigration failure risk has remained one of the important reliability concerns for advanced process technologies. The observation of strong bimodality for the electron up-flow direction in dual-inlaid Cu interconnects has added complexity, but is now widely accepted. The failure voids can occur both within the via ("early" mode) or within the trench ("late" mode). More recently, bimodality has been reported also in down-flow electromigration, leading to very short lifetimes due to small, slit-shaped voids under vias. For a more thorough investigation of these early failure phenomena, specific test structures were designed based on the Wheatstone Bridge technique. The use of these structures enabled an increase of the tested sample size close to 675000, allowing a direct analysis of electromigration failure mechanisms at the single-digit ppm regime. Results indicate that down-flow electromigration exhibits bimodality at very small percentage levels, not readily identifiable with standard testing methods. The activation energy for the down-flow early failure mechanism was determined to be 0.83±0.02 eV. Within the small error bounds of this large-scale statistical experiment, this value is deemed to be significantly lower than the usually reported activation energy of 0.90 eV for electromigration-induced diffusion along Cu/SiCN interfaces. Due to the advantages of the Wheatstone Bridge technique, we were also able to expand the experimental temperature range down to 150° C, coming quite close to typical operating conditions up to 125° C. As a result of the lowered activation energy, we conclude that the down-flow early failure mode may control the chip lifetime at operating conditions. The slit-like character of the early failure void morphology also raises concerns about the validity of the Blech-effect for this mechanism. A very small amount of Cu depletion may cause failure even before a

  4. Large-scale self-assembled epitaxial growth of highly-ordered three-dimensional micro/nano single-crystalline PbSe pyramid arrays by selective chemical bath deposition

    NASA Astrophysics Data System (ADS)

    Qiu, Jijun; Weng, Binbin; Li, Lin; Li, Xiaomin; Shi, Zhisheng

    2015-05-01

    Highly ordered three-dimensional micro- and nano- PbSe pyramid arrays were synthesized by using selective epitaxial self-assembled chemical bath deposition method. Each pyramid consists of a very sharp (111) tip with six smooth equivalent {100} facets. Every (100) facet forms an angle of about 54.7° with respect to the (111) facet. The structural features including pyramidal size and period could be precisely tailored by pre-patterned Au mask and etching time. Pyramids are self-assembled on the confined positions by the dual functions of one-dimensional and two-dimensional oriented attachment mechanisms along [110] directions on the (111) surface, following the Gibbs-Curie-Wulff minimum energy principle. This method could effectively create large, bottom-up 3D pyramidal surface patterns in a cost-effective and time-saving manner, which has potential applications in infrared photoconductors, solar cells and light emitting enhancement for display, etc.

  5. Chemical Reporter for Visualizing Metabolic Cross-Talk between Carbohydrate Metabolism and Protein Modification

    PubMed Central

    2015-01-01

    Metabolic chemical reporters have been largely used to study posttranslational modifications. Generally, it was assumed that these reporters entered one biosynthetic pathway, resulting in labeling of one type of modification. However, because they are metabolized by cells before their addition onto proteins, metabolic chemical reporters potentially provide a unique opportunity to read-out on both modifications of interest and cellular metabolism. We report here the development of a metabolic chemical reporter 1-deoxy-N-pentynyl glucosamine (1-deoxy-GlcNAlk). This small-molecule cannot be incorporated into glycans; however, treatment of mammalian cells results in labeling of a variety proteins and enables their visualization and identification. Competition of this labeling with sodium acetate and an acetyltransferase inhibitor suggests that 1-deoxy-GlcNAlk can enter the protein acetylation pathway. These results demonstrate that metabolic chemical reporters have the potential to isolate and potentially discover cross-talk between metabolic pathways in living cells. PMID:25062036

  6. Chemical modification of corn fiber with ion-exchanging groups

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pretreated corn fiber was chemically modified with quaternary ammonium group or/and sulfonated with 3-chloro-2-hydroxypropanesulfonic acid under vacuum or at ambient pressure. The soluble fraction was dialyzed through 1 kDa MWCO dialysis tubing and the material retained inside the tubing was filtere...

  7. Curvature constraints from large scale structure

    NASA Astrophysics Data System (ADS)

    Di Dio, Enea; Montanari, Francesco; Raccanelli, Alvise; Durrer, Ruth; Kamionkowski, Marc; Lesgourgues, Julien

    2016-06-01

    We modified the CLASS code in order to include relativistic galaxy number counts in spatially curved geometries; we present the formalism and study the effect of relativistic corrections on spatial curvature. The new version of the code is now publicly available. Using a Fisher matrix analysis, we investigate how measurements of the spatial curvature parameter ΩK with future galaxy surveys are affected by relativistic effects, which influence observations of the large scale galaxy distribution. These effects include contributions from cosmic magnification, Doppler terms and terms involving the gravitational potential. As an application, we consider angle and redshift dependent power spectra, which are especially well suited for model independent cosmological constraints. We compute our results for a representative deep, wide and spectroscopic survey, and our results show the impact of relativistic corrections on spatial curvature parameter estimation. We show that constraints on the curvature parameter may be strongly biased if, in particular, cosmic magnification is not included in the analysis. Other relativistic effects turn out to be subdominant in the studied configuration. We analyze how the shift in the estimated best-fit value for the curvature and other cosmological parameters depends on the magnification bias parameter, and find that significant biases are to be expected if this term is not properly considered in the analysis.

  8. Large scale digital atlases in neuroscience

    NASA Astrophysics Data System (ADS)

    Hawrylycz, M.; Feng, D.; Lau, C.; Kuan, C.; Miller, J.; Dang, C.; Ng, L.

    2014-03-01

    Imaging in neuroscience has revolutionized our current understanding of brain structure, architecture and increasingly its function. Many characteristics of morphology, cell type, and neuronal circuitry have been elucidated through methods of neuroimaging. Combining this data in a meaningful, standardized, and accessible manner is the scope and goal of the digital brain atlas. Digital brain atlases are used today in neuroscience to characterize the spatial organization of neuronal structures, for planning and guidance during neurosurgery, and as a reference for interpreting other data modalities such as gene expression and connectivity data. The field of digital atlases is extensive and in addition to atlases of the human includes high quality brain atlases of the mouse, rat, rhesus macaque, and other model organisms. Using techniques based on histology, structural and functional magnetic resonance imaging as well as gene expression data, modern digital atlases use probabilistic and multimodal techniques, as well as sophisticated visualization software to form an integrated product. Toward this goal, brain atlases form a common coordinate framework for summarizing, accessing, and organizing this knowledge and will undoubtedly remain a key technology in neuroscience in the future. Since the development of its flagship project of a genome wide image-based atlas of the mouse brain, the Allen Institute for Brain Science has used imaging as a primary data modality for many of its large scale atlas projects. We present an overview of Allen Institute digital atlases in neuroscience, with a focus on the challenges and opportunities for image processing and computation.

  9. Large-scale carbon fiber tests

    NASA Technical Reports Server (NTRS)

    Pride, R. A.

    1980-01-01

    A realistic release of carbon fibers was established by burning a minimum of 45 kg of carbon fiber composite aircraft structural components in each of five large scale, outdoor aviation jet fuel fire tests. This release was quantified by several independent assessments with various instruments developed specifically for these tests. The most likely values for the mass of single carbon fibers released ranged from 0.2 percent of the initial mass of carbon fiber for the source tests (zero wind velocity) to a maximum of 0.6 percent of the initial carbon fiber mass for dissemination tests (5 to 6 m/s wind velocity). Mean fiber lengths for fibers greater than 1 mm in length ranged from 2.5 to 3.5 mm. Mean diameters ranged from 3.6 to 5.3 micrometers which was indicative of significant oxidation. Footprints of downwind dissemination of the fire released fibers were measured to 19.1 km from the fire.

  10. Large-scale wind turbine structures

    NASA Technical Reports Server (NTRS)

    Spera, David A.

    1988-01-01

    The purpose of this presentation is to show how structural technology was applied in the design of modern wind turbines, which were recently brought to an advanced stage of development as sources of renewable power. Wind turbine structures present many difficult problems because they are relatively slender and flexible; subject to vibration and aeroelastic instabilities; acted upon by loads which are often nondeterministic; operated continuously with little maintenance in all weather; and dominated by life-cycle cost considerations. Progress in horizontal-axis wind turbines (HAWT) development was paced by progress in the understanding of structural loads, modeling of structural dynamic response, and designing of innovative structural response. During the past 15 years a series of large HAWTs was developed. This has culminated in the recent completion of the world's largest operating wind turbine, the 3.2 MW Mod-5B power plane installed on the island of Oahu, Hawaii. Some of the applications of structures technology to wind turbine will be illustrated by referring to the Mod-5B design. First, a video overview will be presented to provide familiarization with the Mod-5B project and the important components of the wind turbine system. Next, the structural requirements for large-scale wind turbines will be discussed, emphasizing the difficult fatigue-life requirements. Finally, the procedures used to design the structure will be presented, including the use of the fracture mechanics approach for determining allowable fatigue stresses.

  11. Large-scale wind turbine structures

    NASA Astrophysics Data System (ADS)

    Spera, David A.

    1988-05-01

    The purpose of this presentation is to show how structural technology was applied in the design of modern wind turbines, which were recently brought to an advanced stage of development as sources of renewable power. Wind turbine structures present many difficult problems because they are relatively slender and flexible; subject to vibration and aeroelastic instabilities; acted upon by loads which are often nondeterministic; operated continuously with little maintenance in all weather; and dominated by life-cycle cost considerations. Progress in horizontal-axis wind turbines (HAWT) development was paced by progress in the understanding of structural loads, modeling of structural dynamic response, and designing of innovative structural response. During the past 15 years a series of large HAWTs was developed. This has culminated in the recent completion of the world's largest operating wind turbine, the 3.2 MW Mod-5B power plane installed on the island of Oahu, Hawaii. Some of the applications of structures technology to wind turbine will be illustrated by referring to the Mod-5B design. First, a video overview will be presented to provide familiarization with the Mod-5B project and the important components of the wind turbine system. Next, the structural requirements for large-scale wind turbines will be discussed, emphasizing the difficult fatigue-life requirements. Finally, the procedures used to design the structure will be presented, including the use of the fracture mechanics approach for determining allowable fatigue stresses.

  12. Food appropriation through large scale land acquisitions

    NASA Astrophysics Data System (ADS)

    Rulli, Maria Cristina; D'Odorico, Paolo

    2014-05-01

    The increasing demand for agricultural products and the uncertainty of international food markets has recently drawn the attention of governments and agribusiness firms toward investments in productive agricultural land, mostly in the developing world. The targeted countries are typically located in regions that have remained only marginally utilized because of lack of modern technology. It is expected that in the long run large scale land acquisitions (LSLAs) for commercial farming will bring the technology required to close the existing crops yield gaps. While the extent of the acquired land and the associated appropriation of freshwater resources have been investigated in detail, the amount of food this land can produce and the number of people it could feed still need to be quantified. Here we use a unique dataset of land deals to provide a global quantitative assessment of the rates of crop and food appropriation potentially associated with LSLAs. We show how up to 300-550 million people could be fed by crops grown in the acquired land, should these investments in agriculture improve crop production and close the yield gap. In contrast, about 190-370 million people could be supported by this land without closing of the yield gap. These numbers raise some concern because the food produced in the acquired land is typically exported to other regions, while the target countries exhibit high levels of malnourishment. Conversely, if used for domestic consumption, the crops harvested in the acquired land could ensure food security to the local populations.

  13. Large Scale Computer Simulation of Erthocyte Membranes

    NASA Astrophysics Data System (ADS)

    Harvey, Cameron; Revalee, Joel; Laradji, Mohamed

    2007-11-01

    The cell membrane is crucial to the life of the cell. Apart from partitioning the inner and outer environment of the cell, they also act as a support of complex and specialized molecular machinery, important for both the mechanical integrity of the cell, and its multitude of physiological functions. Due to its relative simplicity, the red blood cell has been a favorite experimental prototype for investigations of the structural and functional properties of the cell membrane. The erythrocyte membrane is a composite quasi two-dimensional structure composed essentially of a self-assembled fluid lipid bilayer and a polymerized protein meshwork, referred to as the cytoskeleton or membrane skeleton. In the case of the erythrocyte, the polymer meshwork is mainly composed of spectrin, anchored to the bilayer through specialized proteins. Using a coarse-grained model, recently developed by us, of self-assembled lipid membranes with implicit solvent and using soft-core potentials, we simulated large scale red-blood-cells bilayers with dimensions ˜ 10-1 μm^2, with explicit cytoskeleton. Our aim is to investigate the renormalization of the elastic properties of the bilayer due to the underlying spectrin meshwork.

  14. An informal paper on large-scale dynamic systems

    NASA Technical Reports Server (NTRS)

    Ho, Y. C.

    1975-01-01

    Large scale systems are defined as systems requiring more than one decision maker to control the system. Decentralized control and decomposition are discussed for large scale dynamic systems. Information and many-person decision problems are analyzed.

  15. Towards a unifying, systems biology understanding of large-scale cellular death and destruction caused by poorly liganded iron: Parkinson’s, Huntington’s, Alzheimer’s, prions, bactericides, chemical toxicology and others as examples

    PubMed Central

    2010-01-01

    Exposure to a variety of toxins and/or infectious agents leads to disease, degeneration and death, often characterised by circumstances in which cells or tissues do not merely die and cease to function but may be more or less entirely obliterated. It is then legitimate to ask the question as to whether, despite the many kinds of agent involved, there may be at least some unifying mechanisms of such cell death and destruction. I summarise the evidence that in a great many cases, one underlying mechanism, providing major stresses of this type, entails continuing and autocatalytic production (based on positive feedback mechanisms) of hydroxyl radicals via Fenton chemistry involving poorly liganded iron, leading to cell death via apoptosis (probably including via pathways induced by changes in the NF-κB system). While every pathway is in some sense connected to every other one, I highlight the literature evidence suggesting that the degenerative effects of many diseases and toxicological insults converge on iron dysregulation. This highlights specifically the role of iron metabolism, and the detailed speciation of iron, in chemical and other toxicology, and has significant implications for the use of iron chelating substances (probably in partnership with appropriate anti-oxidants) as nutritional or therapeutic agents in inhibiting both the progression of these mainly degenerative diseases and the sequelae of both chronic and acute toxin exposure. The complexity of biochemical networks, especially those involving autocatalytic behaviour and positive feedbacks, means that multiple interventions (e.g. of iron chelators plus antioxidants) are likely to prove most effective. A variety of systems biology approaches, that I summarise, can predict both the mechanisms involved in these cell death pathways and the optimal sites of action for nutritional or pharmacological interventions. PMID:20967426

  16. Chemical modification and reactivity of sulfhydryls and disulfides of rat brain nicotinic-like acetylcholine receptors

    SciTech Connect

    Lukas, R.J.; Bennett, E.L.

    1980-06-25

    Rat central nervous system binding sites for ..cap alpha..-bungarotoxin display considerable biochemical homology with characterized nicotinic acetylcholine receptors from the periphery. They possess a critical disulfide residue(s), which is susceptible to chemical modification and consequent specific alteration in the affinity of the binding site for cholinergic agonists. After reaction with Na/sub 2/S/sub 2/O/sub 5/, as with reaction with dithiothreitol and 5,5'-dithiobis(2-nitrobenzoic acid), the binding site is frozen in a high affinity state toward acetylcholine. After reduction with dithiothreitol and alkylation with a variety of compounds of different molecular configuration or electrical charge, or both, the binding site is frozen in a low affinity state toward acetylcholine. Thus, effects of disulfide/sulfhydryl modification on agonist binding affinity appear to be attributable to the nature of the covalent modification rather than charge or steric alteration at the receptor active site brought about by chemical modification.

  17. Towards large scale production and separation of carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Alvarez, Noe T.

    Since their discovery, carbon nanotubes (CNTs) have boosted the research and applications of nanotechnology; however, many applications of CNTs are inaccessible because they depend upon large-scale CNT production and separations. Type, chirality and diameter control of CNTs determine many of their physical properties, and such control is still not accesible. This thesis studies the fundamentals for scalable selective reactions of HiPCo CNTs as well as the early phase of routes to an inexpensive approach for large-scale CNT production. In the growth part, this thesis covers a complete wet-chemistry process of catalyst and catalyst support deposition for growth of vertically aligned (VA) CNTs. A wet-chemistry preparation process has significant importance for CNT synthesis through chemical vapor deposition (CVD). CVD is by far, the most suitable and inexpensive process for large-scale CNT production when compared to other common processes such as laser ablation and arc discharge. However, its potential has been limited by low-yielding and difficult preparation processes of catalyst and its support, therefore its competitiveness has been reduced. The wet-chemistry process takes advantage of current nanoparticle technology to deposit the catalyst and the catalyst support as a thin film of nanoparticles, making the protocol simple compared to electron beam evaporation and sputtering processes. In the CNT selective reactions part, this thesis studies UV irradiation of individually dispersed HiPCo CNTs that generates auto-selective reactions in the liquid phase with good control over their diameter and chirality. This technique is ideal for large-scale and continuous-process of separations of CNTs by diameter and type. Additionally, an innovative simple catalyst deposition through abrasion is demonstrated. Simple friction between the catalyst and the substrates deposit a high enough density of metal catalyst particles for successful CNT growth. This simple approach has

  18. Sensitivity technologies for large scale simulation.

    SciTech Connect

    Collis, Samuel Scott; Bartlett, Roscoe Ainsworth; Smith, Thomas Michael; Heinkenschloss, Matthias; Wilcox, Lucas C.; Hill, Judith C.; Ghattas, Omar; Berggren, Martin Olof; Akcelik, Volkan; Ober, Curtis Curry; van Bloemen Waanders, Bart Gustaaf; Keiter, Eric Richard

    2005-01-01

    Sensitivity analysis is critically important to numerous analysis algorithms, including large scale optimization, uncertainty quantification,reduced order modeling, and error estimation. Our research focused on developing tools, algorithms and standard interfaces to facilitate the implementation of sensitivity type analysis into existing code and equally important, the work was focused on ways to increase the visibility of sensitivity analysis. We attempt to accomplish the first objective through the development of hybrid automatic differentiation tools, standard linear algebra interfaces for numerical algorithms, time domain decomposition algorithms and two level Newton methods. We attempt to accomplish the second goal by presenting the results of several case studies in which direct sensitivities and adjoint methods have been effectively applied, in addition to an investigation of h-p adaptivity using adjoint based a posteriori error estimation. A mathematical overview is provided of direct sensitivities and adjoint methods for both steady state and transient simulations. Two case studies are presented to demonstrate the utility of these methods. A direct sensitivity method is implemented to solve a source inversion problem for steady state internal flows subject to convection diffusion. Real time performance is achieved using novel decomposition into offline and online calculations. Adjoint methods are used to reconstruct initial conditions of a contamination event in an external flow. We demonstrate an adjoint based transient solution. In addition, we investigated time domain decomposition algorithms in an attempt to improve the efficiency of transient simulations. Because derivative calculations are at the root of sensitivity calculations, we have developed hybrid automatic differentiation methods and implemented this approach for shape optimization for gas dynamics using the Euler equations. The hybrid automatic differentiation method was applied to a first

  19. Chemical modification of near-surface charge trapping in polymers

    NASA Astrophysics Data System (ADS)

    Haridoss, S.; Perlman, M. M.

    1984-03-01

    The surfaces of three polyolefin films, low-density polyethylene, high-density polyethylene, and polypropylene, were chemically modified by etching with permanganic acid, and low-density polyethylene by etching with chromic acid and by staining with chlorosulphonic acid. Polytetrafluoroethylene (Teflon) was treated with a sodium naphthalene complex in glycol ether. The surfaces were examined with a scanning electron microscope, and chemical groups identified by attenuated total reflectance infrared measurements. The surfaces were then corona charged, and the charge stability and trap distributions determined by the methods of thermally stimulated charge decay and thermally stimulated current, respectively. Scanning electron micrographs revealed a nodular surface structure in polyolefins etched with permanganic acid, a rough surface without nodules in low-density polyethylene etched with chromic acid, isolated corroded surface spots in low-density polyethylene stained with chlorosulphonic acid, and a web-like surface in etched Teflon. Permanganic acid removed amorphous and defective regions of the polymer surfaces, exposing more crystalline regions and crystalline-amorphous boundaries, both of which provided trapping sites, producing better charge storers than the virgin equivalents. Lifetimes, and hence usable temperatures in device application, were increased for both negative and positive charge. The other acids reduced the lifetimes in low-density polyethylene. Etching made Teflon as good a positive charge storer as the virgin negatively charged material, a result important to practical applications. While attenuated total reflectance measurements showed the presence of various chemical groups, charge stability seemed to depend more on surface morphology than on which active groups were added to the polymers by the etchants and staining agent.

  20. Method for chemical surface modification of fumed silica particles

    DOEpatents

    Grabbe, Alexis; Michalske, Terry Arthur; Smith, William Larry

    1999-01-01

    Dehydroxylated, silica-containing, glass surfaces are known to be at least partially terminated by strained siloxane rings. According to the invention, a surface of this kind is exposed to a selected silane compound or mixture of silane compounds under reaction-promoting conditions. The ensuing reaction results in opening of the strained siloxane rings, and termination of surface atoms by chemical species, such as organic or organosilicon species, having desirable properties. These species can be chosen to provide qualities such as hydrophobicity, or improved coupling to a polymeric coating.

  1. Method for chemical surface modification of fumed silica particles

    DOEpatents

    Grabbe, A.; Michalske, T.A.; Smith, W.L.

    1999-05-11

    Dehydroxylated, silica-containing, glass surfaces are known to be at least partially terminated by strained siloxane rings. According to the invention, a surface of this kind is exposed to a selected silane compound or mixture of silane compounds under reaction-promoting conditions. The ensuing reaction results in opening of the strained siloxane rings, and termination of surface atoms by chemical species, such as organic or organosilicon species, having desirable properties. These species can be chosen to provide qualities such as hydrophobicity, or improved coupling to a polymeric coating. 11 figs.

  2. International space station. Large scale integration approach

    NASA Astrophysics Data System (ADS)

    Cohen, Brad

    The International Space Station is the most complex large scale integration program in development today. The approach developed for specification, subsystem development, and verification lay a firm basis on which future programs of this nature can be based. International Space Station is composed of many critical items, hardware and software, built by numerous International Partners, NASA Institutions, and U.S. Contractors and is launched over a period of five years. Each launch creates a unique configuration that must be safe, survivable, operable, and support ongoing assembly (assemblable) to arrive at the assembly complete configuration in 2003. The approaches to integrating each of the modules into a viable spacecraft and continue the assembly is a challenge in itself. Added to this challenge are the severe schedule constraints and lack of an "Iron Bird", which prevents assembly and checkout of each on-orbit configuration prior to launch. This paper will focus on the following areas: 1) Specification development process explaining how the requirements and specifications were derived using a modular concept driven by launch vehicle capability. Each module is composed of components of subsystems versus completed subsystems. 2) Approach to stage (each stage consists of the launched module added to the current on-orbit spacecraft) specifications. Specifically, how each launched module and stage ensures support of the current and future elements of the assembly. 3) Verification approach, due to the schedule constraints, is primarily analysis supported by testing. Specifically, how are the interfaces ensured to mate and function on-orbit when they cannot be mated before launch. 4) Lessons learned. Where can we improve this complex system design and integration task?

  3. Large Scale Flame Spread Environmental Characterization Testing

    NASA Technical Reports Server (NTRS)

    Clayman, Lauren K.; Olson, Sandra L.; Gokoghi, Suleyman A.; Brooker, John E.; Ferkul, Paul V.; Kacher, Henry F.

    2013-01-01

    Under the Advanced Exploration Systems (AES) Spacecraft Fire Safety Demonstration Project (SFSDP), as a risk mitigation activity in support of the development of a large-scale fire demonstration experiment in microgravity, flame-spread tests were conducted in normal gravity on thin, cellulose-based fuels in a sealed chamber. The primary objective of the tests was to measure pressure rise in a chamber as sample material, burning direction (upward/downward), total heat release, heat release rate, and heat loss mechanisms were varied between tests. A Design of Experiments (DOE) method was imposed to produce an array of tests from a fixed set of constraints and a coupled response model was developed. Supplementary tests were run without experimental design to additionally vary select parameters such as initial chamber pressure. The starting chamber pressure for each test was set below atmospheric to prevent chamber overpressure. Bottom ignition, or upward propagating burns, produced rapid acceleratory turbulent flame spread. Pressure rise in the chamber increases as the amount of fuel burned increases mainly because of the larger amount of heat generation and, to a much smaller extent, due to the increase in gaseous number of moles. Top ignition, or downward propagating burns, produced a steady flame spread with a very small flat flame across the burning edge. Steady-state pressure is achieved during downward flame spread as the pressure rises and plateaus. This indicates that the heat generation by the flame matches the heat loss to surroundings during the longer, slower downward burns. One heat loss mechanism included mounting a heat exchanger directly above the burning sample in the path of the plume to act as a heat sink and more efficiently dissipate the heat due to the combustion event. This proved an effective means for chamber overpressure mitigation for those tests producing the most total heat release and thusly was determined to be a feasible mitigation

  4. Synchronization of coupled large-scale Boolean networks

    SciTech Connect

    Li, Fangfei

    2014-03-15

    This paper investigates the complete synchronization and partial synchronization of two large-scale Boolean networks. First, the aggregation algorithm towards large-scale Boolean network is reviewed. Second, the aggregation algorithm is applied to study the complete synchronization and partial synchronization of large-scale Boolean networks. Finally, an illustrative example is presented to show the efficiency of the proposed results.

  5. Selective edge modification in graphene and graphite by chemical oxidation.

    PubMed

    Yang, Min; Moriyama, Satoshi; Higuchi, Masayoshi

    2014-04-01

    The effect of edge structures in graphene sheets has been well investigated theoretically but most experimental demonstrations of the functionalization have been for the bulk structures because of only a few reports on chemical methods to modify the edges selectively. We herein report a chemical method using the Lemieux-von Rudloff reagent that selectively oxidizes only the edges of graphene sheets. The selective oxidation at the edges of the graphene sheet was confirmed by thermogravimetric analysis (TGA), Raman mapping measurements, and X-ray photoelectron spectroscopy (XPS). The TGA result of the oxidized graphite with different particle sizes showed a slight weight loss at approximately 350 degrees C (2.29% for the middle particles (35 microm)), which indicates thermal decomposition of the oxidized edge part. The Raman mapping measurement in the inner part of graphene sheets didn't detect any defects or translational symmetry breaking after the oxidation. The XPS data clearly showed that the total carbon atom content present as C--O, C==O, and O--C==C increased from 4.65 to 6.18% by the oxidation. Using the obtained edge-oxidized graphene as a starting material, various functionalizations of the edge structure are expected in the future. PMID:24734719

  6. Chemical modification of graphene aerogels for electrochemical capacitor applications.

    PubMed

    Hong, Jin-Yong; Wie, Jeong Jae; Xu, Yu; Park, Ho Seok

    2015-12-14

    Graphene aerogel is a relatively new type of aerogel that is ideal for energy storage applications because of its large surface area, high electrical conductivity and good chemical stability. Also, three dimensional interconnected macropores offer many advantages such as low density, fast ion and mass transfer, and easy access to storage sites. Such features allow graphene aerogels to be intensively applied for electrochemical capacitor applications. Despite the growing interest in graphene aerogel-based electrochemical capacitors, however, the graphene aerogels still suffer from their low capacitive performances and high fragility. Both relatively low capacitance and brittleness of physically crosslinked graphene aerogels remain a critical challenge. Until now, a number of alternative attempts have been devoted to overcome these shortcomings. In this perspective, we summarize the recent research progress towards the development of advanced graphene aerogel-based electrochemical capacitors according to the different approaches (e.g. porosity, composition and structure controls). Then, the recently proposed chemical strategies to improve the capacitive performances and mechanical durability of graphene aerogels for practical applications are highlighted. Finally, the current challenges and perspectives in this emerging material are also discussed. PMID:26536234

  7. Surface charging, discharging and chemical modification at a sliding contact

    SciTech Connect

    Singh, S. V.; Kusano, Y.; Morgen, P.; Michelsen, P. K.

    2012-04-15

    Electrostatic charging, discharging, and consequent surface modification induced by sliding dissimilar surfaces have been studied. The surface-charge related phenomena were monitored by using a home-built capacitive, non-contact electrical probe, and the surface chemistry was studied by X-ray photoelectron spectroscopy (XPS). The experiments were performed on the disk surface of a ball-on-rotating-disk apparatus; using a glass disk and a Teflon (polytetrafluoroethylene) ball arrangement, and a polyester disks and a diamondlike carbon (DLC) coated steel ball arrangement. The capacitive probe is designed to perform highly resolved measurements, which is sensitive to relative change in charge density on the probed surface. For glass and Teflon arrangement, electrical measurements show that the ball track acquires non-uniform charging. Here not only the increase in charge density, but interestingly, increase in number of highly charged regions on the ball track was resolved. Threefold increase in the number of such highly charged regions per cycle was detected immediately before the gas breakdown-like incidences compared to that of other charge/discharge incidences at a fixed disk rotation speed. We are also able to comment on the behavior and the charge decay time in the ambient air-like condition, once the sliding contact is discontinued. XPS analysis showed a marginal deoxidation effect on the polyester disks due to the charging and discharging of the surfaces. Moreover, these XPS results clearly indicate that the wear and friction (sliding without charging) on the surface can be discarded from inducing such a deoxidation effect.

  8. Surface charging, discharging and chemical modification at a sliding contact

    NASA Astrophysics Data System (ADS)

    Singh, S. V.; Kusano, Y.; Morgen, P.; Michelsen, P. K.

    2012-04-01

    Electrostatic charging, discharging, and consequent surface modification induced by sliding dissimilar surfaces have been studied. The surface-charge related phenomena were monitored by using a home-built capacitive, non-contact electrical probe, and the surface chemistry was studied by X-ray photoelectron spectroscopy (XPS). The experiments were performed on the disk surface of a ball-on-rotating-disk apparatus; using a glass disk and a Teflon (polytetrafluoroethylene) ball arrangement, and a polyester disks and a diamondlike carbon (DLC) coated steel ball arrangement. The capacitive probe is designed to perform highly resolved measurements, which is sensitive to relative change in charge density on the probed surface. For glass and Teflon arrangement, electrical measurements show that the ball track acquires non-uniform charging. Here not only the increase in charge density, but interestingly, increase in number of highly charged regions on the ball track was resolved. Threefold increase in the number of such highly charged regions per cycle was detected immediately before the gas breakdown-like incidences compared to that of other charge/discharge incidences at a fixed disk rotation speed. We are also able to comment on the behavior and the charge decay time in the ambient air-like condition, once the sliding contact is discontinued. XPS analysis showed a marginal deoxidation effect on the polyester disks due to the charging and discharging of the surfaces. Moreover, these XPS results clearly indicate that the wear and friction (sliding without charging) on the surface can be discarded from inducing such a deoxidation effect.

  9. Large-Scale Graphene Film Deposition for Monolithic Device Fabrication

    NASA Astrophysics Data System (ADS)

    Al-shurman, Khaled

    Since 1958, the concept of integrated circuit (IC) has achieved great technological developments and helped in shrinking electronic devices. Nowadays, an IC consists of more than a million of compacted transistors. The majority of current ICs use silicon as a semiconductor material. According to Moore's law, the number of transistors built-in on a microchip can be double every two years. However, silicon device manufacturing reaches its physical limits. To explain, there is a new trend to shrinking circuitry to seven nanometers where a lot of unknown quantum effects such as tunneling effect can not be controlled. Hence, there is an urgent need for a new platform material to replace Si. Graphene is considered a promising material with enormous potential applications in many electronic and optoelectronics devices due to its superior properties. There are several techniques to produce graphene films. Among these techniques, chemical vapor deposition (CVD) offers a very convenient method to fabricate films for large-scale graphene films. Though CVD method is suitable for large area growth of graphene, the need for transferring a graphene film to silicon-based substrates is required. Furthermore, the graphene films thus achieved are, in fact, not single crystalline. Also, graphene fabrication utilizing Cu and Ni at high growth temperature contaminates the substrate that holds Si CMOS circuitry and CVD chamber as well. So, lowering the deposition temperature is another technological milestone for the successful adoption of graphene in integrated circuits fabrication. In this research, direct large-scale graphene film fabrication on silicon based platform (i.e. SiO2 and Si3N4) at low temperature was achieved. With a focus on low-temperature graphene growth, hot-filament chemical vapor deposition (HF-CVD) was utilized to synthesize graphene film using 200 nm thick nickel film. Raman spectroscopy was utilized to examine graphene formation on the bottom side of the Ni film

  10. Chemical Modification of Boron-Doped Diamond Electrodes for Applications to Biosensors and Biosensing.

    PubMed

    Svítková, Jana; Ignat, Teodora; Švorc, Ľubomír; Labuda, Ján; Barek, Jiří

    2016-05-01

    Boron-doped diamond (BDD) is a prospective electrode material that possesses many exceptional properties including wide potential window, low noise, low and stable background current, chemical and mechanical stability, good biocompatibility, and last but not least exceptional resistance to passivation. These characteristics extend its usability in various areas of electrochemistry as evidenced by increasing number of published articles over the past two decades. The idea of chemically modifying BDD electrodes with molecular species attached to the surface for the purpose of creating a rational design has found promising applications in the past few years. BDD electrodes have appeared to be excellent substrate materials for various chemical modifications and subsequent application to biosensors and biosensing. Hence, this article presents modification strategies that have extended applications of BDD electrodes in electroanalytical chemistry. Different methods and steps of surface modification of this electrode material for biosensing and construction of biosensors are discussed. PMID:26337147

  11. Large-Scale Spacecraft Fire Safety Tests

    NASA Technical Reports Server (NTRS)

    Urban, David; Ruff, Gary A.; Ferkul, Paul V.; Olson, Sandra; Fernandez-Pello, A. Carlos; T'ien, James S.; Torero, Jose L.; Cowlard, Adam J.; Rouvreau, Sebastien; Minster, Olivier; Toth, Balazs; Legros, Guillaume; Eigenbrod, Christian; Smirnov, Nickolay; Fujita, Osamu; Jomaas, Grunde

    2014-01-01

    An international collaborative program is underway to address open issues in spacecraft fire safety. Because of limited access to long-term low-gravity conditions and the small volume generally allotted for these experiments, there have been relatively few experiments that directly study spacecraft fire safety under low-gravity conditions. Furthermore, none of these experiments have studied sample sizes and environment conditions typical of those expected in a spacecraft fire. The major constraint has been the size of the sample, with prior experiments limited to samples of the order of 10 cm in length and width or smaller. This lack of experimental data forces spacecraft designers to base their designs and safety precautions on 1-g understanding of flame spread, fire detection, and suppression. However, low-gravity combustion research has demonstrated substantial differences in flame behavior in low-gravity. This, combined with the differences caused by the confined spacecraft environment, necessitates practical scale spacecraft fire safety research to mitigate risks for future space missions. To address this issue, a large-scale spacecraft fire experiment is under development by NASA and an international team of investigators. This poster presents the objectives, status, and concept of this collaborative international project (Saffire). The project plan is to conduct fire safety experiments on three sequential flights of an unmanned ISS re-supply spacecraft (the Orbital Cygnus vehicle) after they have completed their delivery of cargo to the ISS and have begun their return journeys to earth. On two flights (Saffire-1 and Saffire-3), the experiment will consist of a flame spread test involving a meter-scale sample ignited in the pressurized volume of the spacecraft and allowed to burn to completion while measurements are made. On one of the flights (Saffire-2), 9 smaller (5 x 30 cm) samples will be tested to evaluate NASAs material flammability screening tests

  12. Chemical Modification of the Multi-Target Neuroprotective Compound Fisetin

    PubMed Central

    Chiruta, Chandramouli; Schubert, David; Dargusch, Richard; Maher, Pamela

    2012-01-01

    Many factors are implicated in age-related CNS disorders making it unlikely that modulating only a single factor will provide effective treatment. Perhaps a better approach is to identify small molecules that have multiple biological activities relevant to the maintenance of brain function. Recently, we identified an orally active, neuroprotective and cognition-enhancing molecule, the flavonoid fisetin, that is effective in several animal models of CNS disorders. Fisetin has direct antioxidant activity and can also increase the intracellular levels of glutathione (GSH), the major endogenous antioxidant. In addition, fisetin has both neurotrophic and anti-inflammatory activity. However, its relatively high EC50 in cell based assays, low lipophilicity, high tPSA and poor bioavailability suggest that there is room for medicinal chemical improvement. Here we describe a multi-tiered approach to screening that has allowed us to identify fisetin derivatives with significantly enhanced activity in an in vitro neuroprotection model while at the same time maintaining other key activities. PMID:22192055

  13. Nuclear-pumped lasers for large-scale applications

    SciTech Connect

    Anderson, R.E.; Leonard, E.M.; Shea, R.F.; Berggren, R.R.

    1989-05-01

    Efficient initiation of large-volume chemical lasers may be achieved by neutron induced reactions which produce charged particles in the final state. When a burst mode nuclear reactor is used as the neutron source, both a sufficiently intense neutron flux and a sufficiently short initiation pulse may be possible. Proof-of-principle experiments are planned to demonstrate lasing in a direct nuclear-pumped large-volume system; to study the effects of various neutron absorbing materials on laser performance; to study the effects of long initiation pulse lengths; to demonstrate the performance of large-scale optics and the beam quality that may be obtained; and to assess the performance of alternative designs of burst systems that increase the neutron output and burst repetition rate. 21 refs., 8 figs., 5 tabs.

  14. A large-scale crop protection bioassay data set.

    PubMed

    Gaulton, Anna; Kale, Namrata; van Westen, Gerard J P; Bellis, Louisa J; Bento, A Patrícia; Davies, Mark; Hersey, Anne; Papadatos, George; Forster, Mark; Wege, Philip; Overington, John P

    2015-01-01

    ChEMBL is a large-scale drug discovery database containing bioactivity information primarily extracted from scientific literature. Due to the medicinal chemistry focus of the journals from which data are extracted, the data are currently of most direct value in the field of human health research. However, many of the scientific use-cases for the current data set are equally applicable in other fields, such as crop protection research: for example, identification of chemical scaffolds active against a particular target or endpoint, the de-convolution of the potential targets of a phenotypic assay, or the potential targets/pathways for safety liabilities. In order to broaden the applicability of the ChEMBL database and allow more widespread use in crop protection research, an extensive data set of bioactivity data of insecticidal, fungicidal and herbicidal compounds and assays was collated and added to the database. PMID:26175909

  15. Chemical modification of the haem propionate of cytochrome c.

    PubMed Central

    Timkovich, R

    1980-01-01

    The significance of the exposed haem edge in cytochrome c was directly probed by chemically modifying the partially exposed haem propionate in the crevice region around residues threonine-78 and threonine-49. Reaction of tuna heart cytochrome c with a water-soluble carbodi-imide at pH 3.7 in the absence of any added nucleophilic base leads to the covalent addition of substituted N-acylureas to the protein at two sites. One site has been shown to be a haem propionate by isotope-tracer and i.r.-spectral analysis of haem purified from the apoprotein. The other site is aspartial acid-62 on the back of the molecule. The modified cytochrome c demonstrates abnormal properties, including auto-oxidizability, a reduction potential of + 105mV, a reversible transition to a high-spin species below pH 5.3, no 695 nm charge-transfer band in the ferric state and abnormal binding to mitochondrial membranes. The derivative does react with cytochrome oxidase in deoxycholate-treated submitochondrial particles or in purified preparations with a specific activity of 43-65% compared with that obtained with native cytochrome c. The results are consistent with the view that an intact haem crevice is essential for normal values for physiochemical characteristics, but the significant residual enzymic activity suggests that the electron-transfer interface and/or the cytochrome oxidase-binding site cannot be localized solely in the region of the exposed haem propionate. PMID:6246879

  16. Nanomaterials processing toward large-scale flexible/stretchable electronics

    NASA Astrophysics Data System (ADS)

    Takahashi, Toshitake

    In recent years, there has been tremendous progress in large-scale mechanically flexible electronics, where electrical components are fabricated on non-crystalline substrates such as plastics and glass. These devices are currently serving as the basis for various applications such as flat-panel displays, smart cards, and wearable electronics. In this thesis, a promising approach using chemically synthesized nanomaterials is explored to overcome various obstacles current technology faces in this field. Here, we use chemically synthesized semiconducting nanowires (NWs) including group IV (Si, Ge), III-V (InAs) and II-IV (CdS, CdSe) NWs, and semiconductor-enriched SWNTs (99 % purity), and developed reliable, controllable, and more importantly uniform assembly methods on 4-inch wafer-scale flexible substrates in the form of either parallel NW arrays or SWNT random networks, which act as the active components in thin film transistors (TFTs). Thusly obtained TFTs composed of nanomaterials show respectable electrical and optical properties such as 1) cut-off frequency, ft ~ 1 GHz and maximum frequency of oscillation, fmax ~ 1.8 GHz from InAs parallel NW array TFTs with channel length of ~ 1.5 μm, 2) photodetectors covering visible wavelengths (500-700 nm) using compositionally graded CdSxSe1-x (0 < x < 1) parallel NW arrays, and 3) carrier mobility of ~ 20 cm2/Vs, which is an order of magnitude larger than conventional TFT materials such as a-Si and organic semiconductors, without sacrificing current on/off ratio (Ion/Ioff ~ 104) from SWNT network TFTs. The capability to uniformly assemble nanomaterials over large-scale flexible substrates enables us to use them for more sophisticated applications. Artificial electronic skin (e-skin) is demonstrated by laminating pressure sensitive rubber on top of nanomaterial-based active matrix backplanes. Furthermore, an x-ray imaging device is also achieved by combining organic photodiodes with this backplane technology.

  17. [Large scale quantum chemical calculation for drug discovery].

    PubMed

    Kitaura, Kazuo

    2011-01-01

    Due to the increase in computer power and the development of computational methods, it becomes possible to perform quantum mechanical calculations of very large molecules such as proteins that were previously exclusively treated with classical force field methods. We have developed the fragment molecular orbital (FMO) method aimed at biomolecular applications. One of the important applications of the method is in structure-based drug design because it provides accurate descriptions of various non-bonded interactions between a protein and its ligand. In this article, the FMO method will be described as well as its applications to the analysis of protein-ligand binding. PMID:21804319

  18. Large-scale assembly of colloidal particles

    NASA Astrophysics Data System (ADS)

    Yang, Hongta

    This study reports a simple, roll-to-roll compatible coating technology for producing three-dimensional highly ordered colloidal crystal-polymer composites, colloidal crystals, and macroporous polymer membranes. A vertically beveled doctor blade is utilized to shear align silica microsphere-monomer suspensions to form large-area composites in a single step. The polymer matrix and the silica microspheres can be selectively removed to create colloidal crystals and self-standing macroporous polymer membranes. The thickness of the shear-aligned crystal is correlated with the viscosity of the colloidal suspension and the coating speed, and the correlations can be qualitatively explained by adapting the mechanisms developed for conventional doctor blade coating. Five important research topics related to the application of large-scale three-dimensional highly ordered macroporous films by doctor blade coating are covered in this study. The first topic describes the invention in large area and low cost color reflective displays. This invention is inspired by the heat pipe technology. The self-standing macroporous polymer films exhibit brilliant colors which originate from the Bragg diffractive of visible light form the three-dimensional highly ordered air cavities. The colors can be easily changed by tuning the size of the air cavities to cover the whole visible spectrum. When the air cavities are filled with a solvent which has the same refractive index as that of the polymer, the macroporous polymer films become completely transparent due to the index matching. When the solvent trapped in the cavities is evaporated by in-situ heating, the sample color changes back to brilliant color. This process is highly reversible and reproducible for thousands of cycles. The second topic reports the achievement of rapid and reversible vapor detection by using 3-D macroporous photonic crystals. Capillary condensation of a condensable vapor in the interconnected macropores leads to the

  19. Population generation for large-scale simulation

    NASA Astrophysics Data System (ADS)

    Hannon, Andrew C.; King, Gary; Morrison, Clayton; Galstyan, Aram; Cohen, Paul

    2005-05-01

    Computer simulation is used to research phenomena ranging from the structure of the space-time continuum to population genetics and future combat.1-3 Multi-agent simulations in particular are now commonplace in many fields.4, 5 By modeling populations whose complex behavior emerges from individual interactions, these simulations help to answer questions about effects where closed form solutions are difficult to solve or impossible to derive.6 To be useful, simulations must accurately model the relevant aspects of the underlying domain. In multi-agent simulation, this means that the modeling must include both the agents and their relationships. Typically, each agent can be modeled as a set of attributes drawn from various distributions (e.g., height, morale, intelligence and so forth). Though these can interact - for example, agent height is related to agent weight - they are usually independent. Modeling relations between agents, on the other hand, adds a new layer of complexity, and tools from graph theory and social network analysis are finding increasing application.7, 8 Recognizing the role and proper use of these techniques, however, remains the subject of ongoing research. We recently encountered these complexities while building large scale social simulations.9-11 One of these, the Hats Simulator, is designed to be a lightweight proxy for intelligence analysis problems. Hats models a "society in a box" consisting of many simple agents, called hats. Hats gets its name from the classic spaghetti western, in which the heroes and villains are known by the color of the hats they wear. The Hats society also has its heroes and villains, but the challenge is to identify which color hat they should be wearing based on how they behave. There are three types of hats: benign hats, known terrorists, and covert terrorists. Covert terrorists look just like benign hats but act like terrorists. Population structure can make covert hat identification significantly more

  20. Screening of mRNA Chemical Modification to Maximize Protein Expression with Reduced Immunogenicity.

    PubMed

    Uchida, Satoshi; Kataoka, Kazunori; Itaka, Keiji

    2015-01-01

    Chemical modification of nucleosides in mRNA is an important technology to regulate the immunogenicity of mRNA. In this study, various previously reported mRNA formulations were evaluated by analyzing in vitro protein expression and immunogenicity in multiple cell lines. For the macrophage-derived cell line, RAW 264.7, modified mRNA tended to have reduced immunogenicity and increased protein expression compared to the unmodified mRNA. In contrast, in some cell types, such as hepatocellular carcinoma cells (HuH-7) and mouse embryonic fibroblasts (MEFs), protein expression was decreased by mRNA modification. Further analyses revealed that mRNA modifications decreased translation efficiency but increased nuclease stability. Thus, mRNA modification is likely to exert both positive and negative effects on the efficiency of protein expression in transfected cells and optimal mRNA formulation should be determined based on target cell types and transfection purposes. PMID:26213960

  1. Screening of mRNA Chemical Modification to Maximize Protein Expression with Reduced Immunogenicity

    PubMed Central

    Uchida, Satoshi; Kataoka, Kazunori; Itaka, Keiji

    2015-01-01

    Chemical modification of nucleosides in mRNA is an important technology to regulate the immunogenicity of mRNA. In this study, various previously reported mRNA formulations were evaluated by analyzing in vitro protein expression and immunogenicity in multiple cell lines. For the macrophage-derived cell line, RAW 264.7, modified mRNA tended to have reduced immunogenicity and increased protein expression compared to the unmodified mRNA. In contrast, in some cell types, such as hepatocellular carcinoma cells (HuH-7) and mouse embryonic fibroblasts (MEFs), protein expression was decreased by mRNA modification. Further analyses revealed that mRNA modifications decreased translation efficiency but increased nuclease stability. Thus, mRNA modification is likely to exert both positive and negative effects on the efficiency of protein expression in transfected cells and optimal mRNA formulation should be determined based on target cell types and transfection purposes. PMID:26213960

  2. Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis[OPEN

    PubMed Central

    Vandivier, Lee E.; Silverman, Ian M.; Wang, Li-San

    2015-01-01

    Posttranscriptional chemical modification of RNA bases is a widespread and physiologically relevant regulator of RNA maturation, stability, and function. While modifications are best characterized in short, noncoding RNAs such as tRNAs, growing evidence indicates that mRNAs and long noncoding RNAs (lncRNAs) are likewise modified. Here, we apply our high-throughput annotation of modified ribonucleotides (HAMR) pipeline to identify and classify modifications that affect Watson-Crick base pairing at three different levels of the Arabidopsis thaliana transcriptome (polyadenylated, small, and degrading RNAs). We find this type of modifications primarily within uncapped, degrading mRNAs and lncRNAs, suggesting they are the cause or consequence of RNA turnover. Additionally, modifications within stable mRNAs tend to occur in alternatively spliced introns, suggesting they regulate splicing. Furthermore, these modifications target mRNAs with coherent functions, including stress responses. Thus, our comprehensive analysis across multiple RNA classes yields insights into the functions of covalent RNA modifications in plant transcriptomes. PMID:26561561

  3. Chemical modification of poly(p-phenylene) for use in ablative compositions

    NASA Technical Reports Server (NTRS)

    Parker, J. A.; Heimbuch, A. H.; Vincent, D. N.; Hammermesh, C. L.

    1972-01-01

    Development of ablative materials based on modification of polyphenylene compounds is discussed. Chemical and physical properties are analyzed for application as heat resistant materials. Synthesis of linear polyphenylenes is described. Effects of exposure to oxyacetylene flame and composition of resultant char layer are presented.

  4. 77 FR 36170 - TSCA Inventory Update Reporting Modifications; Chemical Data Reporting; 2012 Submission Period...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-18

    ... Reporting Modifications; Chemical Data Reporting'' (76 FR 50816, August 16, 2011) (FRL-8872-9), EPA... ``Actions Concerning Regulations That Significantly Affect Energy Supply, Distribution, or Use'' (66 FR... and Review'' (58 FR 51735, October 4, 1993) and Executive Order 13563 entitled ``Improving...

  5. Surface modification of silicon-containing fluorocarbon films prepared by plasma-enhanced chemical vapor deposition

    NASA Astrophysics Data System (ADS)

    Jin, Yoonyoung; Desta, Yohannes; Goettert, Jost; Lee, G. S.; Ajmera, P. K.

    2005-07-01

    Surface modification of silicon-containing fluorocarbon (SiCF) films achieved by wet chemical treatments and through x-ray irradiation is examined. The SiCF films were prepared by plasma-enhanced chemical vapor deposition, using gas precursors of tetrafluoromethane and disilane. As-deposited SiCF film composition was analyzed by x-ray photoelectron spectroscopy. Surface modification of SiCF films utilizing n-lithiodiaminoethane wet chemical treatment is discussed. Sessile water-drop contact angle changed from 95°+/-2° before treatment to 32°+/-2° after treatment, indicating a change in the film surface characteristics from hydrophobic to hydrophilic. For x-ray irradiation on the SiCF film with a dose of 27.4 kJ/cm3, the contact angle of the sessile water drop changed from 95°+/-2° before radiation to 39°+/-3° after x-ray exposure. The effect of x-ray exposure on chemical bond structure of SiCF films is studied using Fourier transform infrared measurements. Electroless Cu deposition was performed to test the applicability of the surface modified films. The x-ray irradiation method offers a unique advantage in making possible surface modification in a localized area of high-aspect-ratio microstructures. Fabrication of a Ti-membrane x-ray mask is introduced here for selective surface modification using x-ray irradiation.

  6. Multitree Algorithms for Large-Scale Astrostatistics

    NASA Astrophysics Data System (ADS)

    March, William B.; Ozakin, Arkadas; Lee, Dongryeol; Riegel, Ryan; Gray, Alexander G.

    2012-03-01

    this number every week, resulting in billions of objects. At such scales, even linear-time analysis operations present challenges, particularly since statistical analyses are inherently interactive processes, requiring that computations complete within some reasonable human attention span. The quadratic (or worse) runtimes of straightforward implementations become quickly unbearable. Examples of applications. These analysis subroutines occur ubiquitously in astrostatistical work. We list just a few examples. The need to cross-match objects across different catalogs has led to various algorithms, which at some point perform an AllNN computation. 2-point and higher-order spatial correlations for the basis of spatial statistics, and are utilized in astronomy to compare the spatial structures of two datasets, such as an observed sample and a theoretical sample, for example, forming the basis for two-sample hypothesis testing. Friends-of-friends clustering is often used to identify halos in data from astrophysical simulations. Minimum spanning tree properties have also been proposed as statistics of large-scale structure. Comparison of the distributions of different kinds of objects requires accurate density estimation, for which KDE is the overall statistical method of choice. The prediction of redshifts from optical data requires accurate regression, for which kernel regression is a powerful method. The identification of objects of various types in astronomy, such as stars versus galaxies, requires accurate classification, for which KDA is a powerful method. Overview. In this chapter, we will briefly sketch the main ideas behind recent fast algorithms which achieve, for example, linear runtimes for pairwise-distance problems, or similarly dramatic reductions in computational growth. In some cases, the runtime orders for these algorithms are mathematically provable statements, while in others we have only conjectures backed by experimental observations for the time being

  7. Autonomic Computing Paradigm For Large Scale Scientific And Engineering Applications

    NASA Astrophysics Data System (ADS)

    Hariri, S.; Yang, J.; Zhang, Y.

    2005-12-01

    Large-scale distributed scientific applications are highly adaptive and heterogeneous in terms of their computational requirements. The computational complexity associated with each computational region or domain varies continuously and dramatically both in space and time throughout the whole life cycle of the application execution. Furthermore, the underlying distributed computing environment is similarly complex and dynamic in the availabilities and capacities of the computing resources. These challenges combined together make the current paradigms, which are based on passive components and static compositions, ineffectual. Autonomic Computing paradigm is an approach that efficiently addresses the complexity and dynamism of large scale scientific and engineering applications and realizes the self-management of these applications. In this presentation, we present an Autonomic Runtime Manager (ARM) that supports the development of autonomic applications. The ARM includes two modules: online monitoring and analysis module and autonomic planning and scheduling module. The ARM behaves as a closed-loop control system that dynamically controls and manages the execution of the applications at runtime. It regularly senses the state changes of both the applications and the underlying computing resources. It then uses these runtime information and prior knowledge about the application behavior and its physics to identify the appropriate solution methods as well as the required computing and storage resources. Consequently this approach enables us to develop autonomic applications, which are capable of self-management and self-optimization. We have developed and implemented the autonomic computing paradigms for several large scale applications such as wild fire simulations, simulations of flow through variably saturated geologic formations, and life sciences. The distributed wildfire simulation models the wildfire spread behavior by considering such factors as fuel

  8. Large scale sonochemical processing: aspiration and actuality.

    PubMed

    Mason, T J

    2000-10-01

    It has been recognised for many years that power ultrasound has great potential in a wide variety of processes in the chemical and allied industries. Some of these processes have been known for many years and continue to flourish as major commercial applications, e.g. plastic welding and cleaning. Others, like ultrasonic drilling, while showing great potential have not been widely exploited to date. The potential for the industrial use of power ultrasound is enormous, and yet industry seems somewhat reluctant to adopt it. In this article the existing uses of power ultrasound in processing are reviewed and the potentials are explored. PMID:11062866

  9. Automated database design for large-scale scientific applications

    NASA Astrophysics Data System (ADS)

    Papadomanolakis, Stratos

    The need for large-scale scientific data management is today more pressing than ever, as modern sciences need to store and process terabyte-scale data volumes. Traditional systems, relying on filesystems and custom data access and processing code do not scale for multi-terabyte datasets. Therefore, supporting today's data-driven sciences requires the development of new data management capabilities. This Ph.D dissertation develops techniques that allow modern Database Management Systems (DBMS) to efficiently handle large scientific datasets. Several recent successful DBMS deployments target applications like astronomy, that manage collections of objects or observations (e.g. galaxies, spectra) and can easily store their data in a commercial relational DBMS. Query performance for such systems critically depends on the database physical design, the organization of database structures such as indexes and tables. This dissertation develops algorithms and tools for automating the physical design process. Our tools allow databases to tune themselves, providing efficient query execution in the presence of large data volumes and complex query workloads. For more complex applications dealing with multidimensional and time-varying data, standard relational DBMS are inadequate. Efficiently supporting such applications requires the development of novel indexing and query processing techniques. This dissertation develops an indexing technique for unstructured tetrahedral meshes, a multidimensional data organization used in finite element analysis applications. Our technique outperforms existing multidimensional indexing techniques and has the advantage that can easily be integrated with standard DBMS, providing existing systems with the ability to handle spatial data with minor modifications.

  10. Global Wildfire Forecasts Using Large Scale Climate Indices

    NASA Astrophysics Data System (ADS)

    Shen, Huizhong; Tao, Shu

    2016-04-01

    Using weather readings, fire early warning can provided forecast 4-6 hour in advance to minimize fire loss. The benefit would be dramatically enhanced if relatively accurate long-term projection can be also provided. Here we present a novel method for predicting global fire season severity (FSS) at least three months in advance using multiple large-scale climate indices (CIs). The predictive ability is proven effective for various geographic locations and resolution. Globally, as well as in most continents, the El Niño Southern Oscillation (ENSO) is the dominant driving force controlling interannual FSS variability, whereas other CIs also play indispensable roles. We found that a moderate El Niño event is responsible for 465 (272-658 as interquartile range) Tg carbon release and an annual increase of 29,500 (24,500-34,800) deaths from inhalation exposure to air pollutants. Southeast Asia accounts for half of the deaths. Both intercorrelation and interaction of WPs and CIs are revealed, suggesting possible climate-induced modification of fire responses to weather conditions. Our models can benefit fire management in response to climate change.

  11. Ectopically tethered CP190 induces large-scale chromatin decondensation

    NASA Astrophysics Data System (ADS)

    Ahanger, Sajad H.; Günther, Katharina; Weth, Oliver; Bartkuhn, Marek; Bhonde, Ramesh R.; Shouche, Yogesh S.; Renkawitz, Rainer

    2014-01-01

    Insulator mediated alteration in higher-order chromatin and/or nucleosome organization is an important aspect of epigenetic gene regulation. Recent studies have suggested a key role for CP190 in such processes. In this study, we analysed the effects of ectopically tethered insulator factors on chromatin structure and found that CP190 induces large-scale decondensation when targeted to a condensed lacO array in mammalian and Drosophila cells. In contrast, dCTCF alone, is unable to cause such a decondensation, however, when CP190 is present, dCTCF recruits it to the lacO array and mediates chromatin unfolding. The CP190 induced opening of chromatin may not be correlated with transcriptional activation, as binding of CP190 does not enhance luciferase activity in reporter assays. We propose that CP190 may mediate histone modification and chromatin remodelling activity to induce an open chromatin state by its direct recruitment or targeting by a DNA binding factor such as dCTCF.

  12. Ectopically tethered CP190 induces large-scale chromatin decondensation

    PubMed Central

    Ahanger, Sajad H.; Günther, Katharina; Weth, Oliver; Bartkuhn, Marek; Bhonde, Ramesh R.; Shouche, Yogesh S.; Renkawitz, Rainer

    2014-01-01

    Insulator mediated alteration in higher-order chromatin and/or nucleosome organization is an important aspect of epigenetic gene regulation. Recent studies have suggested a key role for CP190 in such processes. In this study, we analysed the effects of ectopically tethered insulator factors on chromatin structure and found that CP190 induces large-scale decondensation when targeted to a condensed lacO array in mammalian and Drosophila cells. In contrast, dCTCF alone, is unable to cause such a decondensation, however, when CP190 is present, dCTCF recruits it to the lacO array and mediates chromatin unfolding. The CP190 induced opening of chromatin may not be correlated with transcriptional activation, as binding of CP190 does not enhance luciferase activity in reporter assays. We propose that CP190 may mediate histone modification and chromatin remodelling activity to induce an open chromatin state by its direct recruitment or targeting by a DNA binding factor such as dCTCF. PMID:24472778

  13. Probes of large-scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Suto, Yasushi; Gorski, Krzysztof; Juszkiewicz, Roman; Silk, Joseph

    1988-01-01

    A general formalism is developed which shows that the gravitational instability theory for the origin of the large-scale structure of the universe is now capable of critically confronting observational results on cosmic background radiation angular anisotropies, large-scale bulk motions, and large-scale clumpiness in the galaxy counts. The results indicate that presently advocated cosmological models will have considerable difficulty in simultaneously explaining the observational results.

  14. Building a Large-Scale Computational Model of a Cortical Neuronal Network

    NASA Astrophysics Data System (ADS)

    Zemanová, Lucia; Zhou, Changsong; Kurths, Jürgen

    We introduce the general framework of the large-scale neuronal model used in the 5th Helmholtz Summer School — Complex Brain Networks. The main aim is to build a universal large-scale model of a cortical neuronal network, structured as a network of networks, which is flexible enough to implement different kinds of topology and neuronal models and which exhibits behavior in various dynamical regimes. First, we describe important biological aspects of brain topology and use them in the construction of a large-scale cortical network. Second, the general dynamical model is presented together with explanations of the major dynamical properties of neurons. Finally, we discuss the implementation of the model into parallel code and its possible modifications and improvements.

  15. Chemical modification and antioxidant activities of polysaccharide from mushroom Inonotus obliquus.

    PubMed

    Ma, Lishuai; Chen, Haixia; Zhang, Yu; Zhang, Ning; Fu, Lingling

    2012-06-20

    Chemical modification polysaccharides exerted potent biological property which was related to the physicochemical properties. In the present study, polysaccharides from Inonotus obliquus were modified by suflation, acetylation and carboxymethylation. The physicochemical and antioxidant properties of I. obliquus polysaccharide (IOPS) and its derivatives were comparatively investigated by chemical methods, gas chromatography, size exclusion chromatography, scanning electron micrograph, infrared spectra and circular dichroism spectra, and ferric reducing power assay and lipid peroxidation inhibition assay, respectively. Results showed that physicochemical and antioxidant properties of IOPS were differed each other after the chemical modification of suflation, acetylation and carboxymethylation. Among the three derivatives, acetylationed polysaccharide (Ac-IOPS) resulted in lower molecular weight distribution, lower intrinsic viscosity, a hyperbranched conformation, higher antioxidant abilities on ferric-reducing power and lipid peroxidation inhibition activity compared with the native polysaccharide IOPS. Ac-IOPS might be explored as a novel potential antioxidant for human consumption. PMID:24750732

  16. Large-scale recording of astrocyte activity

    PubMed Central

    Nimmerjahn, Axel; Bergles, Dwight E.

    2015-01-01

    Astrocytes are highly ramified glial cells found throughout the central nervous system (CNS). They express a variety of neurotransmitter receptors that can induce widespread chemical excitation, placing these cells in an optimal position to exert global effects on brain physiology. However, the activity patterns of only a small fraction of astrocytes have been examined and techniques to manipulate their behavior are limited. As a result, little is known about how astrocytes modulate CNS function on synaptic, microcircuit, or systems levels. Here, we review current and emerging approaches for visualizing and manipulating astrocyte activity in vivo. Deciphering how astrocyte network activity is controlled in different physiological and pathological contexts is critical for defining their roles in the healthy and diseased CNS. PMID:25665733

  17. Large Scale Turbulent Structures in Supersonic Jets

    NASA Technical Reports Server (NTRS)

    Rao, Ram Mohan; Lundgren, Thomas S.

    1997-01-01

    velocities, turbulent stresses, etc. which will aid in turbulence modeling. This report will be presented in two chapters. The first chapter describes some work on the linear stability of a supersonic round jet and the implications of this for the jet noise problem. The second chapter is an extensive discussion of numerical work using the spectral method which we use to solve the compressible Navier-Stokes equations to study turbulent jet flows. The method uses Fourier expansions in the azimuthal and streamwise direction and a 1-D B-spline basis representation in the radial direction. The B-spline basis is locally supported and this ensures block diagonal matrix equations which can be solved in O(N) steps. This is a modification of a boundary layer code developed by Robert Moser. A very accurate highly resolved DNS of a turbulent jet flow is produced.

  18. Large Scale Turbulent Structures in Supersonic Jets

    NASA Technical Reports Server (NTRS)

    Rao, Ram Mohan; Lundgren, Thomas S.

    1997-01-01

    , turbulent stresses, etc. which will aid in turbulence modeling. This report will be presented in two chapters. The first chapter describes some work on the linear stability of a supersonic round jet and the implications of this for the jet noise problem. The second chapter is an extensive discussion of numerical work using the spectral method which we use to solve the compressible Navier-Stokes equations to study turbulent jet flows. The method uses Fourier expansions in the azimuthal and streamwise direction and a 1-D B-spline basis representation in the radial direction. The B-spline basis is locally supported and this ensures block diagonal matrix equations which can be solved in O(N) steps. This is a modification of a boundary layer code developed by Robert Moser. A very accurate highly resolved Direct Numerical Simulation (DNS) of a turbulent jet flow is produced.

  19. Glutathione release through connexin hemichannels: Implications for chemical modification of pores permeable to large molecules

    PubMed Central

    Tong, Xuhui; Lopez, William; Ramachandran, Jayalakshmi; Ayad, Wafaa A.; Liu, Yu; Lopez-Rodriguez, Angelica; Harris, Andrew L.

    2015-01-01

    Cysteine-scanning mutagenesis combined with thiol reagent modification is a powerful method with which to define the pore-lining elements of channels and the changes in structure that accompany channel gating. Using the Xenopus laevis oocyte expression system and two-electrode voltage clamp, we performed cysteine-scanning mutagenesis of several pore-lining residues of connexin 26 (Cx26) hemichannels, followed by chemical modification using a methanethiosulfonate (MTS) reagent, to help identify the position of the gate. Unexpectedly, we observed that the effect of MTS modification on the currents was reversed within minutes of washout. Such a reversal should not occur unless reducing agents, which can break the disulfide thiol–MTS linkage, have access to the site of modification. Given the permeability to large metabolites of connexin channels, we tested whether cytosolic glutathione (GSH), the primary cell reducing agent, was reaching the modified sites through the connexin pore. Inhibition of gamma-glutamylcysteine synthetase by buthionine sulfoximine decreased the cytosolic GSH concentration in Xenopus oocytes and reduced reversibility of MTS modification, as did acute treatment with tert-butyl hydroperoxide, which oxidizes GSH. Cysteine modification based on thioether linkages (e.g., maleimides) cannot be reversed by reducing agents and did not reverse with washout. Using reconstituted hemichannels in a liposome-based transport-specific fractionation assay, we confirmed that homomeric Cx26 and Cx32 and heteromeric Cx26/Cx32 are permeable to GSH and other endogenous reductants. These results show that, for wide pores, accessibility of cytosolic reductants can lead to reversal of MTS-based thiol modifications. This potential for reversibility of thiol modification applies to on-cell accessibility studies of connexin channels and other channels that are permeable to large molecules, such as pannexin, CALHM, and VRAC. PMID:26324677

  20. The Challenge of Large-Scale Literacy Improvement

    ERIC Educational Resources Information Center

    Levin, Ben

    2010-01-01

    This paper discusses the challenge of making large-scale improvements in literacy in schools across an entire education system. Despite growing interest and rhetoric, there are very few examples of sustained, large-scale change efforts around school-age literacy. The paper reviews 2 instances of such efforts, in England and Ontario. After…

  1. INTERNATIONAL WORKSHOP ON LARGE-SCALE REFORESTATION: PROCEEDINGS

    EPA Science Inventory

    The purpose of the workshop was to identify major operational and ecological considerations needed to successfully conduct large-scale reforestation projects throughout the forested regions of the world. Large-scale" for this workshop means projects where, by human effort, approx...

  2. Using Large-Scale Assessment Scores to Determine Student Grades

    ERIC Educational Resources Information Center

    Miller, Tess

    2013-01-01

    Many Canadian provinces provide guidelines for teachers to determine students' final grades by combining a percentage of students' scores from provincial large-scale assessments with their term scores. This practice is thought to hold students accountable by motivating them to put effort into completing the large-scale assessment, thereby…

  3. Protein surface topology-probing by selective chemical modification and mass spectrometric peptide mapping.

    PubMed Central

    Suckau, D; Mak, M; Przybylski, M

    1992-01-01

    Aminoacetylation of lysine residues and the modification of arginine by 1,2-cyclohexanedione to N7,N8-(dihydroxy-1,2-cyclohexylidene)arginine were used for probing the surface topology of hen-eggwhite lysozyme as a model protein. The molecular identification of lysine and arginine modification sites was provided by molecular weight determinations of modified and unmodified tryptic peptide mixtures (peptide mapping) using 252Cf plasma desorption mass spectrometry. At conditions of limited chemical modification, mass-spectrometric peptide-mapping analyses of lysozyme derivatives enabled the direct assignment of relative reactivities of lysine and arginine residues at different reaction times and reagent concentrations. The relative reactivities of lysine residues showed a direct correlation with their surface accessibilities from x-ray structure data. For the reaction with 1,2-cyclohexanedione, a selective modification at Arg-5, -125, -112, and -73 was identified, and an inverse correlation of relative reactivities with the surface accessibility ratios of the N7- and the N8-guanidino functions was obtained. By examination of the x-ray structural data of lysozyme, this selective modification was attributed to intramolecular catalysis because of the presence of neighboring proton acceptor groups, such as the Asp-119 carboxylate group for Arg-125 and the Trp-123 and Arg-125 carbonyl groups for Arg-5. PMID:1608973

  4. Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases

    PubMed Central

    Raindlová, Veronika; Janoušková, Martina; Slavíčková, Michaela; Perlíková, Pavla; Boháčová, Soňa; Milisavljevič, Nemanja; Šanderová, Hana; Benda, Martin; Barvík, Ivan; Krásný, Libor; Hocek, Michal

    2016-01-01

    DNA templates containing a set of base modifications in the major groove (5-substituted pyrimidines or 7-substituted 7-deazapurines bearing H, methyl, vinyl, ethynyl or phenyl groups) were prepared by PCR using the corresponding base-modified 2′-deoxyribonucleoside triphosphates (dNTPs). The modified templates were used in an in vitro transcription assay using RNA polymerase from Bacillus subtilis and Escherichia coli. Some modified nucleobases bearing smaller modifications (H, Me in 7-deazapurines) were perfectly tolerated by both enzymes, whereas bulky modifications (Ph at any nucleobase) and, surprisingly, uracil blocked transcription. Some middle-sized modifications (vinyl or ethynyl) were partly tolerated mostly by the E. coli enzyme. In all cases where the transcription proceeded, full length RNA product with correct sequence was obtained indicating that the modifications of the template are not mutagenic and the inhibition is probably at the stage of initiation. The results are promising for the development of bioorthogonal reactions for artificial chemical switching of the transcription. PMID:27001521

  5. A quantitative strategy to detect changes in accessibility of protein regions to chemical modification on heterodimerization

    PubMed Central

    Dreger, Mathias; Leung, Bo Wah; Brownlee, George G; Deng, Tao

    2009-01-01

    We describe a method for studying quantitative changes in accessibility of surface lysine residues of the PB1 subunit of the influenza RNA polymerase as a result of association with the PA subunit to form a PB1-PA heterodimer. Our method combines two established methods: (i) the chemical modification of surface lysine residues of native proteins by N-hydroxysuccinimidobiotin (NHS-biotin) and (ii) the stable isotope labeling of amino acids in cell culture (SILAC) followed by tryptic digestion and mass spectrometry. By linking the chemical modification with the SILAC methodology for the first time, we obtain quantitative data on chemical modification allowing subtle changes in accessibility to be described. Five regions in the PB1 monomer showed altered reactivity to NHS-biotin when compared with the [PB1-PA] heterodimer. Mutational analysis of residues in two such regions—at K265 and K481 of PB1, which were about three- and twofold, respectively, less accessible to biotinylation in the PB1-PA heterodimer compared with the PB1 monomer, demonstrated that both K265 and K481 were crucial for polymerase function. This novel assay of quantitative profiling of biotinylation patterns (Q-POP assay) highlights likely conformational changes at important functional sites, as observed here for PB1, and may provide information on protein–protein interaction interfaces. The Q-POP assay should be a generally applicable approach and may detect novel functional sites suitable for targeting by drugs. PMID:19517532

  6. Altering the interfacial activation mechanism of a lipase by solid-phase selective chemical modification.

    PubMed

    López-Gallego, Fernando; Abian, Olga; Guisán, Jose Manuel

    2012-09-01

    This study presents a combined protein immobilization, directed mutagenesis, and site-selective chemical modification approach, which was used to create a hyperactivated semisynthetic variant of BTL2. Various alkane chains were tethered at three different positions in order to mimic the lipase interfacial activation exogenously triggered by detergents. Optimum results were obtained when a dodecane chain was introduced at position 320 by solid-phase site-selective chemical modification. The resulting semisynthetic variant showed a 2.5-fold higher activity than the wild-type nonmodified variant in aqueous conditions. Remarkably, this is the maximum hyperactivation ever observed for BTL2 in the presence of detergents such as Triton X-100. We present evidence to suggest that the endogenous dodecane chain hyperactivates the enzyme in a similar fashion as an exogenous detergent molecule. In this way, we also observe a faster irreversible enzyme inhibition and an altered detergent sensitivity profile promoted by the site-selective chemical modification. These findings are also supported by fluorescence studies, which reveal that the structural conformation changes of the semisynthetic variant are different to those of the wild type, an effect that is more pronounced in the presence of detergent. Finally, the optimal immobilized semisynthetic variant was successfully applied to the selective synthesis of oxiran-2-yl butyrate. Significantly, this biocatalyst is 12-fold more efficient than the immobilized wild-type enzyme, producing the S-enantiomer with higher enantiospecificity (ee = 92%). PMID:22876885

  7. A quantitative strategy to detect changes in accessibility of protein regions to chemical modification on heterodimerization.

    PubMed

    Dreger, Mathias; Leung, Bo Wah; Brownlee, George G; Deng, Tao

    2009-07-01

    We describe a method for studying quantitative changes in accessibility of surface lysine residues of the PB1 subunit of the influenza RNA polymerase as a result of association with the PA subunit to form a PB1-PA heterodimer. Our method combines two established methods: (i) the chemical modification of surface lysine residues of native proteins by N-hydroxysuccinimidobiotin (NHS-biotin) and (ii) the stable isotope labeling of amino acids in cell culture (SILAC) followed by tryptic digestion and mass spectrometry. By linking the chemical modification with the SILAC methodology for the first time, we obtain quantitative data on chemical modification allowing subtle changes in accessibility to be described. Five regions in the PB1 monomer showed altered reactivity to NHS-biotin when compared with the [PB1-PA] heterodimer. Mutational analysis of residues in two such regions-at K265 and K481 of PB1, which were about three- and twofold, respectively, less accessible to biotinylation in the PB1-PA heterodimer compared with the PB1 monomer, demonstrated that both K265 and K481 were crucial for polymerase function. This novel assay of quantitative profiling of biotinylation patterns (Q-POP assay) highlights likely conformational changes at important functional sites, as observed here for PB1, and may provide information on protein-protein interaction interfaces. The Q-POP assay should be a generally applicable approach and may detect novel functional sites suitable for targeting by drugs. PMID:19517532

  8. Chemically Patterned Inverse Opal Created by a Selective Photolysis Modification Process.

    PubMed

    Tian, Tian; Gao, Ning; Gu, Chen; Li, Jian; Wang, Hui; Lan, Yue; Yin, Xianpeng; Li, Guangtao

    2015-09-01

    Anisotropic photonic crystal materials have long been pursued for their broad applications. A novel method for creating chemically patterned inverse opals is proposed here. The patterning technique is based on selective photolysis of a photolabile polymer together with postmodification on released amine groups. The patterning method allows regioselective modification within an inverse opal structure, taking advantage of selective chemical reaction. Moreover, combined with the unique signal self-reporting feature of the photonic crystal, the fabricated structure is capable of various applications, including gradient photonic bandgap and dynamic chemical patterns. The proposed method provides the ability to extend the structural and chemical complexity of the photonic crystal, as well as its potential applications. PMID:26269453

  9. Large scale metal-free synthesis of graphene on sapphire and transfer-free device fabrication.

    PubMed

    Song, Hyun Jae; Son, Minhyeok; Park, Chibeom; Lim, Hyunseob; Levendorf, Mark P; Tsen, Adam W; Park, Jiwoong; Choi, Hee Cheul

    2012-05-21

    Metal catalyst-free growth of large scale single layer graphene film on a sapphire substrate by a chemical vapor deposition (CVD) process at 950 °C is demonstrated. A top-gated graphene field effect transistor (FET) device is successfully fabricated without any transfer process. The detailed growth process is investigated by the atomic force microscopy (AFM) studies. PMID:22526246

  10. Distribution probability of large-scale landslides in central Nepal

    NASA Astrophysics Data System (ADS)

    Timilsina, Manita; Bhandary, Netra P.; Dahal, Ranjan Kumar; Yatabe, Ryuichi

    2014-12-01

    Large-scale landslides in the Himalaya are defined as huge, deep-seated landslide masses that occurred in the geological past. They are widely distributed in the Nepal Himalaya. The steep topography and high local relief provide high potential for such failures, whereas the dynamic geology and adverse climatic conditions play a key role in the occurrence and reactivation of such landslides. The major geoscientific problems related with such large-scale landslides are 1) difficulties in their identification and delineation, 2) sources of small-scale failures, and 3) reactivation. Only a few scientific publications have been published concerning large-scale landslides in Nepal. In this context, the identification and quantification of large-scale landslides and their potential distribution are crucial. Therefore, this study explores the distribution of large-scale landslides in the Lesser Himalaya. It provides simple guidelines to identify large-scale landslides based on their typical characteristics and using a 3D schematic diagram. Based on the spatial distribution of landslides, geomorphological/geological parameters and logistic regression, an equation of large-scale landslide distribution is also derived. The equation is validated by applying it to another area. For the new area, the area under the receiver operating curve of the landslide distribution probability in the new area is 0.699, and a distribution probability value could explain > 65% of existing landslides. Therefore, the regression equation can be applied to areas of the Lesser Himalaya of central Nepal with similar geological and geomorphological conditions.

  11. Large-scale native preparation of in vitro transcribed RNA.

    PubMed

    Keel, Amanda Y; Easton, Laura E; Lukavsky, Peter J; Kieft, Jeffrey S

    2009-01-01

    Biophysical studies of RNA require concentrated samples that are chemically and structurally homogeneous. Historically, the most widely used methods for preparing these samples involve in vitro transcription, denaturation of the RNA, purification based on size, and subsequent refolding. These methods are useful but are inherently slow and do not guarantee that the RNA is properly folded. Possible mis-folding is of particular concern with large, complexly folded RNAs. To address these problems, we have developed methods for purifying in vitro transcribed RNAs in their native, folded states. These methods also have the advantage of being rapid and readily scaled to virtually any size RNA or transcription amount. Two methods are presented: the first is an affinity chromatography approach and the second is a weak ion-exchange chromatography approach. Both use equipment and materials readily available to almost any lab and hence should provide flexibility for those seeking alternate approaches to large-scale purification of RNA in the folded state. PMID:20946782

  12. Implicit solvers for large-scale nonlinear problems

    SciTech Connect

    Keyes, D E; Reynolds, D; Woodward, C S

    2006-07-13

    Computational scientists are grappling with increasingly complex, multi-rate applications that couple such physical phenomena as fluid dynamics, electromagnetics, radiation transport, chemical and nuclear reactions, and wave and material propagation in inhomogeneous media. Parallel computers with large storage capacities are paving the way for high-resolution simulations of coupled problems; however, hardware improvements alone will not prove enough to enable simulations based on brute-force algorithmic approaches. To accurately capture nonlinear couplings between dynamically relevant phenomena, often while stepping over rapid adjustments to quasi-equilibria, simulation scientists are increasingly turning to implicit formulations that require a discrete nonlinear system to be solved for each time step or steady state solution. Recent advances in iterative methods have made fully implicit formulations a viable option for solution of these large-scale problems. In this paper, we overview one of the most effective iterative methods, Newton-Krylov, for nonlinear systems and point to software packages with its implementation. We illustrate the method with an example from magnetically confined plasma fusion and briefly survey other areas in which implicit methods have bestowed important advantages, such as allowing high-order temporal integration and providing a pathway to sensitivity analyses and optimization. Lastly, we overview algorithm extensions under development motivated by current SciDAC applications.

  13. Large-scale directional relationship extraction and resolution

    PubMed Central

    Giles, Cory B; Wren, Jonathan D

    2008-01-01

    Background Relationships between entities such as genes, chemicals, metabolites, phenotypes and diseases in MEDLINE are often directional. That is, one may affect the other in a positive or negative manner. Detection of causality and direction is key in piecing pathways together and in examining possible implications of experimental results. Because of the size and growth of biomedical literature, it is increasingly important to be able to automate this process as much as possible. Results Here we present a method of relation extraction using dependency graph parsing with SVM classification. We tested the SVM classifier first on gold standard corpora from GENIA and find it achieved 82% precision and 94.8% recall (F-measure of 87.9) on these standardized test sets. We then applied the entire system to all available MEDLINE abstracts for two target interactions with known effects. We find that while some directional relations are extracted with low ambiguity, others are apparently contradictory, at least when considered in an isolated context. When examined, it is apparent some are dependent upon the surrounding context (e.g. whether the relationship referred to short-term or long-term effects, or whether the focus was extracellular versus intracellular). Conclusion Thesaurus-based directional relation extraction can be done with reasonable accuracy, but is prone to false-positives on larger corpora due to noun modifiers. Furthermore, methods of resolving or disambiguating relationship context and contingencies are important for large-scale corpora. PMID:18793456

  14. Identification of the estrogen receptor Cd-binding sites by chemical modification.

    PubMed

    Nesatyy, Victor J; Rutishauser, Barbara V; Eggen, Rik I L; Suter, Marc J-F

    2005-07-01

    The widely reported interactions of the estrogen receptor (ER) with endocrine disrupting chemicals (EDCs) present in the environment gave raise to public concern and led to a number of screening and testing initiatives on the international level. Recent studies indicated that certain heavy metals, including cadmium, can mimic the effects of the endogenous estrogen receptor agonist 17beta-estradiol, and lead to estrogen receptor activation. Previous studies of the chimeric proteins, which incorporate the ligand-binding domain of the human ER, identified Cys 381, Cys 447, Glu 523, His 524 and Asp 538 as possible sites of interactions with cadmium. In the present study we utilized the rainbow trout ER ligand-binding domain fused to glutathione-S-transferase, and used Cd-shielding against various types of chemical modification of the fusion protein to study non-covalent interactions between the ER and Cd. The distribution of exposed and shielded residues allowed to identify amino acid residues involved in the interaction. Our data indicated preferential protection of Cys groups by cadmium, suggesting their involvement in the interaction. This supports data found in the literature on the strong binding affinity of the thiol group towards metals. However, not all Cys in the fusion protein sequence were protected against chemical modification, illustrating the importance of their chemical environment. In general, the location of rtER-LBD Cys residues implicated in Cd interactions did not confirm assignments made by alanine-scanning mutagenesis for the hER, probably due to differences in experimental setup and fusion proteins used. The involvement of other functional groups such as carboxylic acids in the Cd interactions, though not confirmed, can not be completely ruled out due to the general limitations of the chemical modification approach discussed in detail. Suggestions for an improved experimental setup were made. PMID:15965534

  15. Large-scale epitaxial growth kinetics of graphene: A kinetic Monte Carlo study

    SciTech Connect

    Jiang, Huijun; Hou, Zhonghuai

    2015-08-28

    Epitaxial growth via chemical vapor deposition is considered to be the most promising way towards synthesizing large area graphene with high quality. However, it remains a big theoretical challenge to reveal growth kinetics with atomically energetic and large-scale spatial information included. Here, we propose a minimal kinetic Monte Carlo model to address such an issue on an active catalyst surface with graphene/substrate lattice mismatch, which facilitates us to perform large scale simulations of the growth kinetics over two dimensional surface with growth fronts of complex shapes. A geometry-determined large-scale growth mechanism is revealed, where the rate-dominating event is found to be C{sub 1}-attachment for concave growth-front segments and C{sub 5}-attachment for others. This growth mechanism leads to an interesting time-resolved growth behavior which is well consistent with that observed in a recent scanning tunneling microscopy experiment.

  16. Mechanisation of large-scale agricultural fields in developing countries - a review.

    PubMed

    Onwude, Daniel I; Abdulstter, Rafia; Gomes, Chandima; Hashim, Norhashila

    2016-09-01

    Mechanisation of large-scale agricultural fields often requires the application of modern technologies such as mechanical power, automation, control and robotics. These technologies are generally associated with relatively well developed economies. The application of these technologies in some developing countries in Africa and Asia is limited by factors such as technology compatibility with the environment, availability of resources to facilitate the technology adoption, cost of technology purchase, government policies, adequacy of technology and appropriateness in addressing the needs of the population. As a result, many of the available resources have been used inadequately by farmers, who continue to rely mostly on conventional means of agricultural production, using traditional tools and equipment in most cases. This has led to low productivity and high cost of production among others. Therefore this paper attempts to evaluate the application of present day technology and its limitations to the advancement of large-scale mechanisation in developing countries of Africa and Asia. Particular emphasis is given to a general understanding of the various levels of mechanisation, present day technology, its management and application to large-scale agricultural fields. This review also focuses on/gives emphasis to future outlook that will enable a gradual, evolutionary and sustainable technological change. The study concludes that large-scale-agricultural farm mechanisation for sustainable food production in Africa and Asia must be anchored on a coherent strategy based on the actual needs and priorities of the large-scale farmers. © 2016 Society of Chemical Industry. PMID:26940194

  17. Enhancing surface free energy and hydrophilicity through chemical modification of microstructured titanium implant surfaces.

    PubMed

    Rupp, F; Scheideler, L; Olshanska, N; de Wild, M; Wieland, M; Geis-Gerstorfer, J

    2006-02-01

    Roughness-induced hydrophobicity, well-known from natural plant surfaces and intensively studied toward superhydrophobic surfaces, has currently been identified on microstructured titanium implant surfaces. Studies indicate that microstructuring by sandblasting and acid etching (SLA) enhances the osteogenic properties of titanium. The undesired initial hydrophobicity, however, presumably decelerates primary interactions with the aqueous biosystem. To improve the initial wettability and to retain SLA microstructure, a novel surface modification was tested. This modification differs from SLA by its preparation after acid etching, which was done under protective gas conditions following liquid instead of dry storage. We hypothesized that this modification should have increased wettability due to the prevention of contaminations that occurs during air contact. The main outcome of dynamic wettability measurements was that the novel modification shows increased surface free energy (SFE) and increased hydrophilicity with initial water contact angles of 0 degrees compared to 139.9 degrees for SLA. This hydrophilization was kept even after any drying. Reduced hydrocarbon contaminations were identified to play a possible role in altered surface thermodynamics. Such surfaces aim to retain the hydrophilicity and natural high surface energy of the Ti dioxide surface until surgical implants' insertion and are compared in this in vitro study with structural surface variants of titanium to compare roughness and chemically induced wettability. PMID:16270344

  18. Laser and chemical surface modifications of titanium grade 2 for medical application

    NASA Astrophysics Data System (ADS)

    Kwaśniak, P.; Pura, J.; Zwolińska, M.; Wieciński, P.; Skarżyński, H.; Olszewski, L.; Marczak, J.; Garbacz, H.; Kurzydłowski, K. J.

    2015-05-01

    The article presents combined, chemical and physical approach to titanium surface functionalization designed for biomedical applications. The topography modification has been obtained by employing the double laser beam interference technique and chemical etching. In the outcome, clean and smooth Ti surface as well as periodic striated topography with the roughness range from nano- to micrometers were created. The obtained structures were characterized in terms of shape, roughness, chemical composition, mechanical properties and microstructures. In order to achieve all information, numerous of research methods have been used: scanning electron microscopy, atomic force microscopy, optical profilometry and microhardness measurements. Demonstrated methodology can be used as an effective tool for manufacturing controlled surface structures improving the bone-implants interactions.

  19. Interpretation of large-scale deviations from the Hubble flow

    NASA Astrophysics Data System (ADS)

    Grinstein, B.; Politzer, H. David; Rey, S.-J.; Wise, Mark B.

    1987-03-01

    The theoretical expectation for large-scale streaming velocities relative to the Hubble flow is expressed in terms of statistical correlation functions. Only for objects that trace the mass would these velocities have a simple cosmological interpretation. If some biasing effects the objects' formation, then nonlinear gravitational evolution is essential to predicting the expected large-scale velocities, which also depend on the nature of the biasing.

  20. Large scale suppression of scalar power on a spatial condensation

    NASA Astrophysics Data System (ADS)

    Kouwn, Seyen; Kwon, O.-Kab; Oh, Phillial

    2015-03-01

    We consider a deformed single-field inflation model in terms of three SO(3) symmetric moduli fields. We find that spatially linear solutions for the moduli fields induce a phase transition during the early stage of the inflation and the suppression of scalar power spectrum at large scales. This suppression can be an origin of anomalies for large-scale perturbation modes in the cosmological observation.

  1. Large-scale motions in a plane wall jet

    NASA Astrophysics Data System (ADS)

    Gnanamanickam, Ebenezer; Jonathan, Latim; Shibani, Bhatt

    2015-11-01

    The dynamic significance of large-scale motions in turbulent boundary layers have been the focus of several recent studies, primarily focussing on canonical flows - zero pressure gradient boundary layers, flows within pipes and channels. This work presents an investigation into the large-scale motions in a boundary layer that is used as the prototypical flow field for flows with large-scale mixing and reactions, the plane wall jet. An experimental investigation is carried out in a plane wall jet facility designed to operate at friction Reynolds numbers Reτ > 1000 , which allows for the development of a significant logarithmic region. The streamwise turbulent intensity across the boundary layer is decomposed into small-scale (less than one integral length-scale δ) and large-scale components. The small-scale energy has a peak in the near-wall region associated with the near-wall turbulent cycle as in canonical boundary layers. However, eddies of large-scales are the dominating eddies having significantly higher energy, than the small-scales across almost the entire boundary layer even at the low to moderate Reynolds numbers under consideration. The large-scales also appear to amplitude and frequency modulate the smaller scales across the entire boundary layer.

  2. Modification of chemical and physical factors in steamflood to increase heavy oil recovery

    SciTech Connect

    Yortsos, Y.C.

    1991-04-01

    Three aspects of vapor-liquid flow in porous media were addressed: (i) Extension of a previous vapor-liquid model for solution gas-drive to a water liquid-water vapor (steam) system in a pore network; (ii) Visualization of steam injection in Hele-Shaw cells and glass micromodels; and (iii) Macroscopic description of concurrent vapor-liquid flow in porous media. Significant progress was made in the study of reservoir heterogeneity and its effects on flow processes. The authors have considered three general areas: (i) The representation of naturally fractured systems; (ii) The large-scale averaging (derivation of pseudo-functions) for displacement in macroscopically heterogeneous systems; and (iii) The study of parallel flow, typically encountered in long and narrow reservoirs. The third area of research in this report involves chemical additives for the improvement of recovery efficiencies. The authors have been studying the following three aspects: (i) Caustic additives at elevated temperatures; (ii) Foam generation; and (iii) Non-Newtonian flow in porous media. The study of caustic injection at elevated temperatures, specifically the silica dissolution and caustic consumption, has been terminated. A technical report will summarize the results obtained. Here, the authors address the remaining aspects (ii) and (iii). 107 refs., 87 figs., 4 tabs.

  3. Surface modification via wet chemical etching of single-crystalline silicon for photovoltaic application.

    PubMed

    Reshak, A H; Shahimin, M M; Shaari, S; Johan, N

    2013-11-01

    The potential of solar cells have not been fully tapped due to the lack of energy conversion efficiency. There are three important mechanisms in producing high efficiency cells to harvest solar energy; reduction of light reflectance, enhancement of light trapping in the cell and increment of light absorption. The current work represent studies conducted in surface modification of single-crystalline silicon solar cells using wet chemical etching techniques. Two etching types are applied; alkaline etching (KOH:IPA:DI) and acidic etching (HF:HNO3:DI). The alkaline solution resulted in anisotropic profile that leads to the formation of inverted pyramids. While acidic solution formed circular craters along the front surface of silicon wafer. This surface modification will leads to the reduction of light reflectance via texturizing the surface and thereby increases the short circuit current and conversion rate of the solar cells. PMID:24139943

  4. Chemical modification of coating of Pinus halepensis pollen by ozone exposure.

    PubMed

    Naas, Oumsaad; Mendez, Maxence; Quijada, Melesio; Gosselin, Sylvie; Farah, Jinane; Choukri, Ali; Visez, Nicolas

    2016-07-01

    Pollen coating, located on the exine, includes an extractible lipid fraction. The modification of the pollen coating by air pollutants may have implications on the interactions of pollen with plant stigmas and human cells. Pinus halepensis pollen was exposed to ozone in vitro and the pollen coating was extracted with organic solvent and analyzed by GC-MS. Ozone has induced chemical changes in the coating as observed with an increase in dicarboxylic acids, short-chain fatty acids and aldehydes. 4-Hydroxybenzaldehyde was identified as the main reaction product and its formation was shown to occur both on native pollen and on defatted pollen. 4-Hydroxybenzaldehyde is very likely formed via the ozonolysis of acid coumaric-like monomers constitutive of the sporopollenin. Modification of pollen coating by air pollutants should be accounted for in further studies on effect of pollution on germination and on allergenicity. PMID:27155099

  5. Chemical modification of glass surface with a monolayer of nonchromophoric and chromophoric methacrylate terpolymer

    NASA Astrophysics Data System (ADS)

    Janik, Ryszard; Kucharski, Stanisław; Sobolewska, Anna; Barille, Regis

    2010-11-01

    The methacrylate terpolymers, a nonchromophoric and chromophoric one, containing 2-hydroxyethyl groups were reacted with 3-isocyanatopropyltriethoxysilane to obtain reactive polymers able to form covalent bonding with -SiOH groups of the glass surface via triethoxysilane group condensation. Chemical modification of the Corning 2949 glass plates treated in this way resulted in increase of wetting angle from 11° to ca. 70-73°. Determination of ellipsometric parameters revealed low value of the substrate refractive index as compared with that of bulk Corning 2949 glass suggesting roughness of the surface. The AFM image of the bare glass surface and that modified with terpolymer monolayer confirmed this phenomenon. Modification of the glass with the terpolymer monolayer made it possible to create the substrate surface well suited for deposition of familiar chromophore film by spin-coating. The chromophore polymer film deposited onto the modified glass surface was found to be resistant to come unstuck in aqueous solution.

  6. Physical, Chemical and Biochemical Modifications of Protein-Based Films and Coatings: An Extensive Review.

    PubMed

    Zink, Joël; Wyrobnik, Tom; Prinz, Tobias; Schmid, Markus

    2016-01-01

    Protein-based films and coatings are an interesting alternative to traditional petroleum-based materials. However, their mechanical and barrier properties need to be enhanced in order to match those of the latter. Physical, chemical, and biochemical methods can be used for this purpose. The aim of this article is to provide an overview of the effects of various treatments on whey, soy, and wheat gluten protein-based films and coatings. These three protein sources have been chosen since they are among the most abundantly used and are well described in the literature. Similar behavior might be expected for other protein sources. Most of the modifications are still not fully understood at a fundamental level, but all the methods discussed change the properties of the proteins and resulting products. Mastering these modifications is an important step towards the industrial implementation of protein-based films. PMID:27563881

  7. Robust Chemical Synthesis of Membrane Proteins through a General Method of Removable Backbone Modification.

    PubMed

    Zheng, Ji-Shen; He, Yao; Zuo, Chao; Cai, Xiao-Ying; Tang, Shan; Wang, Zhipeng A; Zhang, Long-Hua; Tian, Chang-Lin; Liu, Lei

    2016-03-16

    Chemical protein synthesis can provide access to proteins with post-translational modifications or site-specific labelings. Although this technology is finding increasing applications in the studies of water-soluble globular proteins, chemical synthesis of membrane proteins remains elusive. In this report, a general and robust removable backbone modification (RBM) method is developed for the chemical synthesis of membrane proteins. This method uses an activated O-to-N acyl transfer auxiliary to install in the Fmoc solid-phase peptide synthesis process a RBM group with switchable reactivity toward trifluoroacetic acid. The method can be applied to versatile membrane proteins because the RBM group can be placed at any primary amino acid. With RBM, the membrane proteins and their segments behave almost as if they were water-soluble peptides and can be easily handled in the process of ligation, purification, and mass characterizations. After the full-length protein is assembled, the RBM group can be readily removed by trifluoroacetic acid. The efficiency and usefulness of the new method has been demonstrated by the successful synthesis of a two-transmembrane-domain protein (HCV p7 ion channel) with site-specific isotopic labeling and a four-transmembrane-domain protein (multidrug resistance transporter EmrE). This method enables practical synthesis of small- to medium-sized membrane proteins or membrane protein domains for biochemical and biophysical studies. PMID:26943264

  8. Chemical modifications and bioconjugate reactions of nanomaterials for sensing, imaging, drug delivery and therapy.

    PubMed

    Biju, Vasudevanpillai

    2014-02-01

    As prepared nanomaterials of metals, semiconductors, polymers and carbon often need surface modifications such as ligand exchange, and chemical and bioconjugate reactions for various biosensor, bioanalytical, bioimaging, drug delivery and therapeutic applications. Such surface modifications help us to control the physico-chemical, toxicological and pharmacological properties of nanomaterials. Furthermore, introduction of various reactive functional groups on the surface of nanomaterials allows us to conjugate a spectrum of contrast agents, antibodies, peptides, ligands, drugs and genes, and construct multifunctional and hybrid nanomaterials for the targeted imaging and treatment of cancers. This tutorial review is intended to provide an introduction to newcomers about how chemical and bioconjugate reactions transform the surface of nanomaterials such as silica nanoparticles, gold nanoparticles, gold quantum clusters, semiconductor quantum dots, carbon nanotubes, fullerene and graphene, and accordingly formulate them for applications such as biosensing, bioimaging, drug and gene delivery, chemotherapy, photodynamic therapy and photothermal therapy. Nonetheless, controversial reports and our growing concerns about toxicity and pharmacokinetics of nanomaterials suggest the need for not only rigorous in vivo experiments in animal models but also novel nanomaterials for practical applications in the clinical settings. Further reading of original and review articles cited herein is necessary to buildup in-depth knowledge about the chemistry, bioconjugate chemistry and biological applications of individual nanomaterials. PMID:24220322

  9. The large-scale landslide risk classification in catchment scale

    NASA Astrophysics Data System (ADS)

    Liu, Che-Hsin; Wu, Tingyeh; Chen, Lien-Kuang; Lin, Sheng-Chi

    2013-04-01

    The landslide disasters caused heavy casualties during Typhoon Morakot, 2009. This disaster is defined as largescale landslide due to the casualty numbers. This event also reflects the survey on large-scale landslide potential is so far insufficient and significant. The large-scale landslide potential analysis provides information about where should be focused on even though it is very difficult to distinguish. Accordingly, the authors intend to investigate the methods used by different countries, such as Hong Kong, Italy, Japan and Switzerland to clarify the assessment methodology. The objects include the place with susceptibility of rock slide and dip slope and the major landslide areas defined from historical records. Three different levels of scales are confirmed necessarily from country to slopeland, which are basin, catchment, and slope scales. Totally ten spots were classified with high large-scale landslide potential in the basin scale. The authors therefore focused on the catchment scale and employ risk matrix to classify the potential in this paper. The protected objects and large-scale landslide susceptibility ratio are two main indexes to classify the large-scale landslide risk. The protected objects are the constructions and transportation facilities. The large-scale landslide susceptibility ratio is based on the data of major landslide area and dip slope and rock slide areas. Totally 1,040 catchments are concerned and are classified into three levels, which are high, medium, and low levels. The proportions of high, medium, and low levels are 11%, 51%, and 38%, individually. This result represents the catchments with high proportion of protected objects or large-scale landslide susceptibility. The conclusion is made and it be the base material for the slopeland authorities when considering slopeland management and the further investigation.

  10. In-Membrane Chemical Modification (IMCM) for Site-Specific Chromophore Labeling of GPCRs.

    PubMed

    Sušac, Lukas; O'Connor, Casey; Stevens, Raymond C; Wüthrich, Kurt

    2015-12-01

    We present in-membrane chemical modification (IMCM) for obtaining selective chromophore labeling of intracellular surface cysteines in G-protein-coupled receptors (GPCRs) with minimal mutagenesis. This method takes advantage of the natural protection of most cysteines by the membrane environment. Practical use of IMCM is illustrated with the site-specific introduction of chromophores for NMR and fluorescence spectroscopy in the human κ-opioid receptor (KOR) and the human A2A adenosine receptor (A2A AR). IMCM is applicable to a wide range of in vitro studies of GPCRs, including single-molecule spectroscopy, and is a promising platform for in-cell spectroscopy experiments. PMID:26545333

  11. [Bio-based pharmaceutical polymers, possibility of their chemical modification and the applicability of modified polymers].

    PubMed

    Sebe, István; Szabó, Barnabás; Zelkó, Romána

    2012-01-01

    Different types of polymers are widely used in biomedical, pharmaceutical and cosmetic purposes. Their applications are curbed, if the polymers can not break down by the body or if the polymer itself is harmful or decompose to harmful material. Authors provide an overview of different types of pharmaceutical polymers of various sources, of the structural characterization and possibilities of their chemical modification and of the classical and instrumental analytical examination methods. The paper deals with the limitations of the use of biopolymers, as well. PMID:23444721

  12. Chemical modification of B4C cap layers on Pd/B4C multilayers

    NASA Astrophysics Data System (ADS)

    Supruangnet, Ratchadaporn; Morawe, Christian; Peffen, Jean-Christophe; Nakajima, Hideki; Rattanasuporn, Surachet; Photongkam, Pat; Jearanaikoon, Nichada; Busayaporn, Wutthikri

    2016-03-01

    Chemical modifications of B4C cap layers on sputtered Pd/B4C multilayer coatings for X-ray optical applications were investigated using X-ray reflectivity, photoemission electron spectroscopy, photoemission electron microscopy, transmission electron microscopy, energy dispersive X-ray spectroscopy, and infrared spectroscopy. The results indicate oxidation down to probing depths of about 10 nm and strong evidence for the formation of B2O3 crystals at the sample surface, while B4C like compounds are absent.

  13. Unsaturated Hydraulic Conductivity for Evaporation in Large scale Heterogeneous Soils

    NASA Astrophysics Data System (ADS)

    Sun, D.; Zhu, J.

    2014-12-01

    In this study we aim to provide some practical guidelines of how the commonly used simple averaging schemes (arithmetic, geometric, or harmonic mean) perform in simulating large scale evaporation in a large scale heterogeneous landscape. Previous studies on hydraulic property upscaling focusing on steady state flux exchanges illustrated that an effective hydraulic property is usually more difficult to define for evaporation. This study focuses on upscaling hydraulic properties of large scale transient evaporation dynamics using the idea of the stream tube approach. Specifically, the two main objectives are: (1) if the three simple averaging schemes (i.e., arithmetic, geometric and harmonic means) of hydraulic parameters are appropriate in representing large scale evaporation processes, and (2) how the applicability of these simple averaging schemes depends on the time scale of evaporation processes in heterogeneous soils. Multiple realizations of local evaporation processes are carried out using HYDRUS-1D computational code (Simunek et al, 1998). The three averaging schemes of soil hydraulic parameters were used to simulate the cumulative flux exchange, which is then compared with the large scale average cumulative flux. The sensitivity of the relative errors to the time frame of evaporation processes is also discussed.

  14. EINSTEIN'S SIGNATURE IN COSMOLOGICAL LARGE-SCALE STRUCTURE

    SciTech Connect

    Bruni, Marco; Hidalgo, Juan Carlos; Wands, David

    2014-10-10

    We show how the nonlinearity of general relativity generates a characteristic nonGaussian signal in cosmological large-scale structure that we calculate at all perturbative orders in a large-scale limit. Newtonian gravity and general relativity provide complementary theoretical frameworks for modeling large-scale structure in ΛCDM cosmology; a relativistic approach is essential to determine initial conditions, which can then be used in Newtonian simulations studying the nonlinear evolution of the matter density. Most inflationary models in the very early universe predict an almost Gaussian distribution for the primordial metric perturbation, ζ. However, we argue that it is the Ricci curvature of comoving-orthogonal spatial hypersurfaces, R, that drives structure formation at large scales. We show how the nonlinear relation between the spatial curvature, R, and the metric perturbation, ζ, translates into a specific nonGaussian contribution to the initial comoving matter density that we calculate for the simple case of an initially Gaussian ζ. Our analysis shows the nonlinear signature of Einstein's gravity in large-scale structure.

  15. Simultaneous effect of modified gravity and primordial non-Gaussianity in large scale structure observations

    SciTech Connect

    Mirzatuny, Nareg; Khosravi, Shahram; Baghram, Shant; Moshafi, Hossein E-mail: khosravi@mail.ipm.ir E-mail: hosseinmoshafi@iasbs.ac.ir

    2014-01-01

    In this work we study the simultaneous effect of primordial non-Gaussianity and the modification of the gravity in f(R) framework on large scale structure observations. We show that non-Gaussianity and modified gravity introduce a scale dependent bias and growth rate functions. The deviation from ΛCDM in the case of primordial non-Gaussian models is in large scales, while the growth rate deviates from ΛCDM in small scales for modified gravity theories. We show that the redshift space distortion can be used to distinguish positive and negative f{sub NL} in standard background, while in f(R) theories they are not easily distinguishable. The galaxy power spectrum is generally enhanced in presence of non-Gaussianity and modified gravity. We also obtain the scale dependence of this enhancement. Finally we define galaxy growth rate and galaxy growth rate bias as new observational parameters to constrain cosmology.

  16. Analytic framework for peptidomics applied to large-scale neuropeptide identification.

    PubMed

    Secher, Anna; Kelstrup, Christian D; Conde-Frieboes, Kilian W; Pyke, Charles; Raun, Kirsten; Wulff, Birgitte S; Olsen, Jesper V

    2016-01-01

    Large-scale mass spectrometry-based peptidomics for drug discovery is relatively unexplored because of challenges in peptide degradation and identification following tissue extraction. Here we present a streamlined analytical pipeline for large-scale peptidomics. We developed an optimized sample preparation protocol to achieve fast, reproducible and effective extraction of endogenous peptides from sub-dissected organs such as the brain, while diminishing unspecific protease activity. Each peptidome sample was analysed by high-resolution tandem mass spectrometry and the resulting data set was integrated with publically available databases. We developed and applied an algorithm that reduces the peptide complexity for identification of biologically relevant peptides. The developed pipeline was applied to rat hypothalamus and identifies thousands of neuropeptides and their post-translational modifications, which is combined in a resource format for visualization, qualitative and quantitative analyses. PMID:27142507

  17. Analytic framework for peptidomics applied to large-scale neuropeptide identification

    PubMed Central

    Secher, Anna; Kelstrup, Christian D.; Conde-Frieboes, Kilian W.; Pyke, Charles; Raun, Kirsten; Wulff, Birgitte S.; Olsen, Jesper V.

    2016-01-01

    Large-scale mass spectrometry-based peptidomics for drug discovery is relatively unexplored because of challenges in peptide degradation and identification following tissue extraction. Here we present a streamlined analytical pipeline for large-scale peptidomics. We developed an optimized sample preparation protocol to achieve fast, reproducible and effective extraction of endogenous peptides from sub-dissected organs such as the brain, while diminishing unspecific protease activity. Each peptidome sample was analysed by high-resolution tandem mass spectrometry and the resulting data set was integrated with publically available databases. We developed and applied an algorithm that reduces the peptide complexity for identification of biologically relevant peptides. The developed pipeline was applied to rat hypothalamus and identifies thousands of neuropeptides and their post-translational modifications, which is combined in a resource format for visualization, qualitative and quantitative analyses. PMID:27142507

  18. Cell adhesive and antifouling polyvinyl chloride surfaces via wet chemical modification.

    PubMed

    Gabriel, Matthias; Strand, Dennis; Vahl, Christian-Friedrich

    2012-09-01

    Polyvinyl chloride (PVC) is one of the most frequently used polymers for the manufacturing of medical devices. Limitations for its usage are based upon unfavorable surface properties of the polymer including its hydrophobicity and lack of functionalities in order to increase its versatility. To address this issue, wet chemical modification of PVC was performed through surface amination using the bifunctional compound ethylene diamine. The reaction was conducted in order to achieve maximum surface amination while leaving the bulk material unaffected. The initial activation step was characterized by means of various methods including contact angle measurements, colorimetric amine quantification, infrared spectroscopy, and gel permeation chromatography. Depth profiles were obtained by a confocal microscopic method using fluorescence labeling. Exclusive surface modification was thus confirmed. To demonstrate biological applications of the presented technique, two examples were chosen: The covalent immobilization of the cell adhesive Asp-Gly-Asp-Ser-peptide (RGD) onto PVC samples yielded a surface that strongly supported cellular adhesion and proliferation of fibroblasts. In contrast, the decoration of PVC with the hydrophilic polymer polyethylene glycol prevented cellular adhesion to a large extent. The impact of these modifications was demonstrated by cell culture experiments. PMID:22747750

  19. Chemical modification studies on arginine kinase: essential cysteine and arginine residues at the active site.

    PubMed

    Zhu, Wen-Jing; Li, Miao; Wang, Xiao-Yun

    2007-12-01

    Chemical modification was used to elucidate the essential amino acids in the catalytic activity of arginine kinase (AK) from Migratoria manilensis. Among six cysteine (Cys) residues only one Cys residue was determined to be essential in the active site by Tsou's method. Furthermore, the AK modified by DTNB can be fully reactivated by dithiothreitol (DTT) in a monophasic kinetic course. At the same time, this reactivation can be slowed down in the presence of ATP, suggesting that the essential Cys is located near the ATP binding site. The ionizing groups at the AK active site were studied and the standard dissociation enthalpy (DeltaH degrees ) was 12.38kcal/mol, showing that the dissociation group may be the guanidino of arginine (Arg). Using the specific chemical modifier phenylglyoxal (PG) demonstrated that only one Arg, located near the ATP binding site, is essential for the activity of AK. PMID:17765964

  20. Chemical modification of carbohydrates in tissue sections may unmask mucin antigens.

    PubMed

    Kirkeby, S

    2013-01-01

    Expression of mucins in cells and tissues is of great diagnostic and prognostic importance, and immunohistochemistry frequently is used to detect them. Reports concerning mucin localization in sections sometimes are conflicting, however, partly because immunogenic regions of the mucin molecule may be masked and thus not available for binding to an antibody. We modified carbohydrates in tissue sections chemically to enhance the binding of monoclonal mucin antibodies and of the lectin, Vicia villosa B4, to human tissue. The immunohistochemical localization of MUC1 and the simple mucin-type antigens, Tn and sialyl-Tn, was influenced by oxidation with periodic acid and by β-elimination before incubation. In some epithelial cells the staining was prevented by these procedures while in other cells it was evident. It appears that chemical modification can either destroy some antigen binding sites or unmask cryptic antigen binding sites in the mucin molecule and thereby make them accessible for immunohistochemical detection. PMID:22998734

  1. The Evolution of Adenoviral Vectors through Genetic and Chemical Surface Modifications

    PubMed Central

    Capasso, Cristian; Garofalo, Mariangela; Hirvinen, Mari; Cerullo, Vincenzo

    2014-01-01

    A long time has passed since the first clinical trial with adenoviral (Ad) vectors. Despite being very promising, Ad vectors soon revealed their limitations in human clinical trials. The pre-existing immunity, the marked liver tropism and the high toxicity of first generation Ad (FG-Ad) vectors have been the main challenges for the development of new approaches. Significant effort toward the development of genetically and chemically modified adenoviral vectors has enabled researchers to create more sophisticated vectors for gene therapy, with an improved safety profile and a higher transduction ability of different tissues. In this review, we will describe the latest findings in the high-speed, evolving field of genetic and chemical modifications of adenoviral vectors, a field in which different disciplines, such as biomaterial research, virology and immunology, co-operate synergistically to create better gene therapy tools for modern challenges. PMID:24549268

  2. Chemical modification approaches for improved performance of Na-ion battery electrodes

    NASA Astrophysics Data System (ADS)

    Byles, Bryan; Clites, Mallory; Pomerantseva, Ekaterina

    2015-08-01

    Na-ion batteries have received considerable attention in recent years but still face performance challenges such as limited cycle lifetime and low capacities at high current rates. In this work, we propose novel combinations of preand post-synthesis treatments to modify known Na-ion battery electrode materials to achieve enhanced electrochemical performance. We work with two model metal oxide materials to demonstrate the effectiveness of the different treatments. First, wet chemical preintercalation is combined with post-synthesis aging, hydrothermal treatment, and annealing of α-V2O5, resulting in enhanced capacity retention in a Na-ion battery system. The hydrothermal treatment resulted in an increased specific capacity of nearly 300 mAh/g. Second, post-synthesis acid leaching is performed on α- MnO2, also resulting in improved electrochemical capacity. The chemical, structural, and morphological changes brought about by the modifications are fully characterized.

  3. Negative-tone block copolymer lithography by in situ surface chemical modification.

    PubMed

    Kim, Bong Hoon; Byeon, Kyeong-Jae; Kim, Ju Young; Kim, Jinseung; Jin, Hyeong Min; Cho, Joong-Yeon; Jeong, Seong-Jun; Shin, Jonghwa; Lee, Heon; Kim, Sang Ouk

    2014-10-29

    Negative-tone block copolymer (BCP) lithography based on in situ surface chemical modification is introduced as a highly efficient, versatile self-assembled nanopatterning. BCP blends films consisting of end-functionalized low molecular weight poly(styrene-ran-methyl methacrylate) and polystyrene-block-Poly(methyl methacylate) can produce surface vertical BCP nanodomains on various substrates without prior surface chemical treatment. Simple oxygen plasma treatment is employed to activate surface functional group formation at various substrates, where the end-functionalized polymers can be covalently bonded during the thermal annealing of BCP thin films. The covalently bonded brush layer mediates neutral interfacial condition for vertical BCP nanodomain alignment. This straightforward approach for high aspect ratio, vertical self-assembled nanodomain formation facilitates single step, site-specific BCP nanopatterning widely useful for various substrates. Moreover, this approach is compatible with directed self-assembly approaches to produce device oriented laterally ordered nanopatterns. PMID:24912807

  4. Mass transport and element mobilisation during large-scale metasomatism

    NASA Astrophysics Data System (ADS)

    Putnis, C. V.; Austrheim, H.; Jamtveit, B.; Engvik, A. K.; Putnis, A.

    2009-04-01

    Replacement textures commonly occur in relation to fluid-driven large scale metasomatism and metamorphism and these processes are often related to mineralisation. For example, the albitisation of gabbroic rocks in the Bamble District, southern Norway is associated with ore deposits. Similar albitised rocks are also characteristic of the Curnamona Province, Australia, which includes large areas of mineralisation such as the Pb, Zn, Ag of the Broken Hill deposits as well as Cu, Au and U deposits. The main question addressed here is the mechanism of mass transport and hence element mobilisation. An indication of the former presence of fluids within a rock can be seen in mineral textures, such as porosity, replacement rims, replacement induced fracturing and crystallographic continuity across sharp compositional boundaries. Such textural observations from natural rocks as well as experimental products show that during mineral-fluid interaction, the crystallographic relations between parent and product phases control the nucleation of the product, and hence a coupling between dissolution and reprecipitation. If the rate of nucleation and growth of the product equals the dissolution rate, a pseudomorphic replacement takes place. The degree of epitaxy (or lattice misfit) at the interface, the relative solubility of parent and product phases and the molar volume changes control the microstructure of the product phase. The key observation is that these factors control the generation of porosity as well as reaction induced fracturing ahead of the main reaction interface. Porosity is generated whenever the amount of parent dissolved is greater than the amount of product reprecipitated, irrespective of the molar volume changes of the solid reactants and products. This porosity is occupied by the fluid phase during the reaction, and provides a mechanism of mass transport and fluid movement between reaction interface and the surrounding phases. The reaction-induced fracturing

  5. Large-Scale Spray Releases: Initial Aerosol Test Results

    SciTech Connect

    Schonewill, Philip P.; Gauglitz, Phillip A.; Bontha, Jagannadha R.; Daniel, Richard C.; Kurath, Dean E.; Adkins, Harold E.; Billing, Justin M.; Burns, Carolyn A.; Davis, James M.; Enderlin, Carl W.; Fischer, Christopher M.; Jenks, Jeromy WJ; Lukins, Craig D.; MacFarlan, Paul J.; Shutthanandan, Janani I.; Smith, Dennese M.

    2012-12-01

    One of the events postulated in the hazard analysis at the Waste Treatment and Immobilization Plant (WTP) and other U.S. Department of Energy (DOE) nuclear facilities is a breach in process piping that produces aerosols with droplet sizes in the respirable range. The current approach for predicting the size and concentration of aerosols produced in a spray leak involves extrapolating from correlations reported in the literature. These correlations are based on results obtained from small engineered spray nozzles using pure liquids with Newtonian fluid behavior. The narrow ranges of physical properties on which the correlations are based do not cover the wide range of slurries and viscous materials that will be processed in the WTP and across processing facilities in the DOE complex. Two key technical areas were identified where testing results were needed to improve the technical basis by reducing the uncertainty due to extrapolating existing literature results. The first technical need was to quantify the role of slurry particles in small breaches where the slurry particles may plug and result in substantially reduced, or even negligible, respirable fraction formed by high-pressure sprays. The second technical need was to determine the aerosol droplet size distribution and volume from prototypic breaches and fluids, specifically including sprays from larger breaches with slurries where data from the literature are scarce. To address these technical areas, small- and large-scale test stands were constructed and operated with simulants to determine aerosol release fractions and generation rates from a range of breach sizes and geometries. The properties of the simulants represented the range of properties expected in the WTP process streams and included water, sodium salt solutions, slurries containing boehmite or gibbsite, and a hazardous chemical simulant. The effect of anti-foam agents was assessed with most of the simulants. Orifices included round holes and

  6. Low energy oxygen ion beam modification of the surface morphology and chemical structure of polyurethane fibers

    NASA Astrophysics Data System (ADS)

    Wong, K. H.; Zinke-Allmang, M.; Wan, W. K.; Zhang, J. Z.; Hu, P.

    2006-01-01

    Energetic O+ ions were implanted into polyurethane (PU) fiber filaments, at 60 and 100 keV with doses of 5 × 1014 and 1 × 1015 ions/cm2, to modify the near-surface fiber morphology. The implantations were performed at room temperature and at -197 °C, a temperature well below the glass transition temperature for this system. At room temperature, the lower energy implantation heats the fibers primarily near their surface, causing the fiber surface to smoothen and to develop a flattened shape. At the higher energy, the ion beam deposits its energy closer to the fiber core, heating the fiber more uniformly and causing them to re-solidify slowly. This favors a cylindrical equilibrium shape with a smooth fiber surface and no crack lines. The average fiber diameter reduced during 100 keV implantation from 3.1 to 2.3 μm. At -197 °C, the ion implantation does not provide enough heat to cause notable physical modifications, but the fibers crack and break during subsequent warming to room temperature. The dose dependence of the crack formation along the fiber intersections is presented. The ion beams further cause near-surface chemical modifications in the fibers, particularly introducing two new chemical functional groups (C-(Cdbnd O)-C and C-N-C).

  7. Chemical modification produces species-specific changes in cucurbitacin antifeedant effect.

    PubMed

    Lang, Karen Luise; Deagosto, Emilio; Zimmermann, Lara Almida; Machado, Vanessa Rocha; Campos Bernardes, Lílian Sibelle; Schenkel, Eloir Paulo; Duran, Fernando Javier; Palermo, Jorge; Rossini, Carmen

    2013-06-12

    Cucurbitacins are secondary metabolites that mediate insect plant interactions not only as allomones against generalists but also as kairomones for specialist herbivores. This study was undertaken to identify the potential of cucurbitacin derivatives as insect antifeedant agents. The antifeedant capacity against a Cucurbitaceae specialist [ Epilachna paenulata (Coleoptera: Coccinellidae)] and a polyphagous insect [ Pseudaletia adultera (Lepidoptera: Noctuidae)] was evaluated in preference tests in which the insects were given a choice between food plants either treated with the cucurbitacin derivatives or treated with the solvent. The activity was found not to be related to the basic cucurbitacin skeleton, as only 15 of the 28 tested cucurbitacin derivatives were active. Only one of the tested compounds was phagostimulant to the specialist insect (the hemissuccinate of 16-oxo-dihydrocucurbitacin B derivative), while all other active derivatives were deterrent against one of the insects (13 compounds) or both of them (3 compounds). Changes in ring A of the cucurbitacins, as well as in the side chain, modified the activity. As a general trend, when chemical modifications of the basic structure produced a change in activity, the response was opposite in both insects used as biodetectors, indicating that a selective variation in the activity may be achieved by chemical modifications of the cucurbitacin skeleton. PMID:23646892

  8. Review: Chemical and structural modifications of pulmonary collectins and their functional consequences.

    PubMed

    Atochina-Vasserman, Elena N; Beers, Michael F; Gow, Andrew J

    2010-06-01

    The lung is continuously exposed to inhaled pathogens (toxic pollutants, micro-organisms, environmental antigens, allergens) from the external environment. In the broncho-alveolar space, the critical balance between a measured protective response against harmful pathogens and an inappropriate inflammatory response to harmless particles is discerned by the innate pulmonary immune system. Among its many components, the surfactant proteins and specifically the pulmonary collectins (surfactant proteins A [SP-A] and D [SP-D]) appear to provide important contributions to the modulation of host defense and inflammation in the lung. Many studies have shown that multimerization of SP-A and SP-D are important for efficient local host defense including neutralization and opsonization of influenza A virus, binding Pneumocystis murina and inhibition of LPS-induced inflammatory cell responses. These observations strongly imply that oligomerization of collectins is a critical feature of its function. However, during the inflammatory state, despite normal pool sizes, chemical modification of collectins can result in alteration of their structure and function. Both pulmonary collectins can be altered through proteolytic inactivation, nitration, S-nitrosylation, oxidation and/or crosslinking as a consequence of the inflammatory milieu facilitated by cytokines, nitric oxide, proteases, and other chemical mediators released by inflammatory cells. Thus, this review will summarize recent developments in our understanding of the relationship between post-translational assembly of collectins and their modification by inflammation as an important molecular switch for the regulation of local innate host defense. PMID:20423921

  9. Surface topology of Minibody by selective chemical modifications and mass spectrometry.

    PubMed

    Zappacosta, F; Ingallinella, P; Scaloni, A; Pessi, A; Bianchi, E; Sollazzo, M; Tramontano, A; Marino, G; Pucci, P

    1997-09-01

    The surface topology of the Minibody, a small de novo-designed beta-protein, has been probed by a strategy that combines selective chemical modification with a variety of reagents and mass spectrometric analysis of the modified fragments. Under appropriate conditions, the susceptibility of individual residues primarily depends on their surface accessibility so that their relative reactivities can be correlated with their position in the tertiary structure of the protein. Moreover, this approach provides information on interacting residues, since intramolecular interactions might greatly affect the reactivity of individual side chains by altering their pKa values. The results of this study indicate that, while overall the Minibody model is correct, the beta-sheet formed by the N- and C-terminal segments is most likely distorted. This is also in agreement with previous results that were obtained using a similar approach where mass spectrometry was used to identify Minibody fragments from limited proteolysis (Zappacosta F, Pessi A, Bianchi E, Venturini S, Sollazzo M, Tramontano A. Marino G, Pucci P. 1996. Probing the tertiary structure of proteins by limited proteolysis and mass spectrometry: The case of Minibody. Protein Sci 5:802-813). The chemical modification approach, in combination with limited proteolysis procedures, can provide useful, albeit partial, structural information to complement simulation techniques. This is especially valuable when, as in the Minibody case, an NMR and/or X-ray structure cannot be obtained due to insufficient solubility of the molecule. PMID:9300490

  10. Recent Progress in Chemical Modifications of Chlorophylls and Bacteriochlorophylls for the Applications in Photodynamic Therapy.

    PubMed

    Staron, Jakub; Boron, Bożena; Karcz, Dariusz; Szczygieł, Małgorzata; Fiedor, Leszek

    2015-01-01

    Since photodynamic therapy emerged as a promising cancer treatment, the development of photosensitizers has gained great interest. In this context, the photosynthetic pigments, chlorophylls and bacteriochlorophylls, as excellent natural photosensitizers, attracted much attention. In effect, several (bacterio) chlorophyll-based phototherapeutic agents have been developed and (or are about to) enter the clinics. The aim of this review article is to give a survey of the advances in the synthetic chemistry of these pigments which have been made over the last decade, and which are pertinent to the application of their derivatives as photosensitizers for photodynamic therapy (PDT). The review focuses on the synthetic strategies undertaken to obtain novel derivatives of (bacterio)chlorophylls with both enhanced photosensitizing and tumorlocalizing properties, and also improved photo- and chemical stability. These include modifications of the C- 17-ester moiety, the isocyclic ring, the central binding pocket, and the derivatization of peripheral functionalities at the C-3 and C-7 positions with carbohydrate-, peptide-, and nanoparticle moieties or other residues. The effects of these modifications on essential features of the pigments are discussed, such as the efficiency of reactive oxygen species generation, photostability, phototoxicity and interactions with living organisms. The review is divided into several sections. In the first part, the principles of PDT and photosensitizer action are briefly described. Then the relevant photophysical features of (bacterio)chlorophylls and earlier approaches to their modification are summarized. Next, a more detailed overview of the progress in synthetic methods is given, followed by a discussion of the effects of these modifications on the photophysics of the pigments and on their biological activity. PMID:26282940

  11. Toward Improved Support for Loosely Coupled Large Scale Simulation Workflows

    SciTech Connect

    Boehm, Swen; Elwasif, Wael R; Naughton, III, Thomas J; Vallee, Geoffroy R

    2014-01-01

    High-performance computing (HPC) workloads are increasingly leveraging loosely coupled large scale simula- tions. Unfortunately, most large-scale HPC platforms, including Cray/ALPS environments, are designed for the execution of long-running jobs based on coarse-grained launch capabilities (e.g., one MPI rank per core on all allocated compute nodes). This assumption limits capability-class workload campaigns that require large numbers of discrete or loosely coupled simulations, and where time-to-solution is an untenable pacing issue. This paper describes the challenges related to the support of fine-grained launch capabilities that are necessary for the execution of loosely coupled large scale simulations on Cray/ALPS platforms. More precisely, we present the details of an enhanced runtime system to support this use case, and report on initial results from early testing on systems at Oak Ridge National Laboratory.

  12. A relativistic signature in large-scale structure

    NASA Astrophysics Data System (ADS)

    Bartolo, Nicola; Bertacca, Daniele; Bruni, Marco; Koyama, Kazuya; Maartens, Roy; Matarrese, Sabino; Sasaki, Misao; Verde, Licia; Wands, David

    2016-09-01

    In General Relativity, the constraint equation relating metric and density perturbations is inherently nonlinear, leading to an effective non-Gaussianity in the dark matter density field on large scales-even if the primordial metric perturbation is Gaussian. Intrinsic non-Gaussianity in the large-scale dark matter overdensity in GR is real and physical. However, the variance smoothed on a local physical scale is not correlated with the large-scale curvature perturbation, so that there is no relativistic signature in the galaxy bias when using the simplest model of bias. It is an open question whether the observable mass proxies such as luminosity or weak lensing correspond directly to the physical mass in the simple halo bias model. If not, there may be observables that encode this relativistic signature.

  13. Coupling between convection and large-scale circulation

    NASA Astrophysics Data System (ADS)

    Becker, T.; Stevens, B. B.; Hohenegger, C.

    2014-12-01

    The ultimate drivers of convection - radiation, tropospheric humidity and surface fluxes - are altered both by the large-scale circulation and by convection itself. A quantity to which all drivers of convection contribute is moist static energy, or gross moist stability, respectively. Therefore, a variance analysis of the moist static energy budget in radiative-convective equilibrium helps understanding the interaction of precipitating convection and the large-scale environment. In addition, this method provides insights concerning the impact of convective aggregation on this coupling. As a starting point, the interaction is analyzed with a general circulation model, but a model intercomparison study using a hierarchy of models is planned. Effective coupling parameters will be derived from cloud resolving models and these will in turn be related to assumptions used to parameterize convection in large-scale models.

  14. Large-scale current systems in the dayside Venus ionosphere

    NASA Technical Reports Server (NTRS)

    Luhmann, J. G.; Elphic, R. C.; Brace, L. H.

    1981-01-01

    The occasional observation of large-scale horizontal magnetic fields within the dayside ionosphere of Venus by the flux gate magnetometer on the Pioneer Venus orbiter suggests the presence of large-scale current systems. Using the measured altitude profiles of the magnetic field and the electron density and temperature, together with the previously reported neutral atmosphere density and composition, it is found that the local ionosphere can be described at these times by a simple steady state model which treats the unobserved quantities, such as the electric field, as parameters. When the model is appropriate, the altitude profiles of the ion and electron velocities and the currents along the satellite trajectory can be inferred. These results elucidate the configurations and sources of the ionospheric current systems which produce the observed large-scale magnetic fields, and in particular illustrate the effect of ion-neutral coupling in the determination of the current system at low altitudes.

  15. Do Large-Scale Topological Features Correlate with Flare Properties?

    NASA Astrophysics Data System (ADS)

    DeRosa, Marc L.; Barnes, Graham

    2016-05-01

    In this study, we aim to identify whether the presence or absence of particular topological features in the large-scale coronal magnetic field are correlated with whether a flare is confined or eruptive. To this end, we first determine the locations of null points, spine lines, and separatrix surfaces within the potential fields associated with the locations of several strong flares from the current and previous sunspot cycles. We then validate the topological skeletons against large-scale features in observations, such as the locations of streamers and pseudostreamers in coronagraph images. Finally, we characterize the topological environment in the vicinity of the flaring active regions and identify the trends involving their large-scale topologies and the properties of the associated flares.

  16. Magnetic Helicity and Large Scale Magnetic Fields: A Primer

    NASA Astrophysics Data System (ADS)

    Blackman, Eric G.

    2015-05-01

    Magnetic fields of laboratory, planetary, stellar, and galactic plasmas commonly exhibit significant order on large temporal or spatial scales compared to the otherwise random motions within the hosting system. Such ordered fields can be measured in the case of planets, stars, and galaxies, or inferred indirectly by the action of their dynamical influence, such as jets. Whether large scale fields are amplified in situ or a remnant from previous stages of an object's history is often debated for objects without a definitive magnetic activity cycle. Magnetic helicity, a measure of twist and linkage of magnetic field lines, is a unifying tool for understanding large scale field evolution for both mechanisms of origin. Its importance stems from its two basic properties: (1) magnetic helicity is typically better conserved than magnetic energy; and (2) the magnetic energy associated with a fixed amount of magnetic helicity is minimized when the system relaxes this helical structure to the largest scale available. Here I discuss how magnetic helicity has come to help us understand the saturation of and sustenance of large scale dynamos, the need for either local or global helicity fluxes to avoid dynamo quenching, and the associated observational consequences. I also discuss how magnetic helicity acts as a hindrance to turbulent diffusion of large scale fields, and thus a helper for fossil remnant large scale field origin models in some contexts. I briefly discuss the connection between large scale fields and accretion disk theory as well. The goal here is to provide a conceptual primer to help the reader efficiently penetrate the literature.

  17. The Evolution of Baryons in Cosmic Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Snedden, Ali; Arielle Phillips, Lara; Mathews, Grant James; Coughlin, Jared; Suh, In-Saeng; Bhattacharya, Aparna

    2015-01-01

    The environments of galaxies play a critical role in their formation and evolution. We study these environments using cosmological simulations with star formation and supernova feedback included. From these simulations, we parse the large scale structure into clusters, filaments and voids using a segmentation algorithm adapted from medical imaging. We trace the star formation history, gas phase and metal evolution of the baryons in the intergalactic medium as function of structure. We find that our algorithm reproduces the baryon fraction in the intracluster medium and that the majority of star formation occurs in cold, dense filaments. We present the consequences this large scale environment has for galactic halos and galaxy evolution.

  18. Corridors Increase Plant Species Richness at Large Scales

    SciTech Connect

    Damschen, Ellen I.; Haddad, Nick M.; Orrock,John L.; Tewksbury, Joshua J.; Levey, Douglas J.

    2006-09-01

    Habitat fragmentation is one of the largest threats to biodiversity. Landscape corridors, which are hypothesized to reduce the negative consequences of fragmentation, have become common features of ecological management plans worldwide. Despite their popularity, there is little evidence documenting the effectiveness of corridors in preserving biodiversity at large scales. Using a large-scale replicated experiment, we showed that habitat patches connected by corridors retain more native plant species than do isolated patches, that this difference increases over time, and that corridors do not promote invasion by exotic species. Our results support the use of corridors in biodiversity conservation.

  19. Large-scale ER-damper for seismic protection

    NASA Astrophysics Data System (ADS)

    McMahon, Scott; Makris, Nicos

    1997-05-01

    A large scale electrorheological (ER) damper has been designed, constructed, and tested. The damper consists of a main cylinder and a piston rod that pushes an ER-fluid through a number of stationary annular ducts. This damper is a scaled- up version of a prototype ER-damper which has been developed and extensively studied in the past. In this paper, results from comprehensive testing of the large-scale damper are presented, and the proposed theory developed for predicting the damper response is validated.

  20. Survey of decentralized control methods. [for large scale dynamic systems

    NASA Technical Reports Server (NTRS)

    Athans, M.

    1975-01-01

    An overview is presented of the types of problems that are being considered by control theorists in the area of dynamic large scale systems with emphasis on decentralized control strategies. Approaches that deal directly with decentralized decision making for large scale systems are discussed. It is shown that future advances in decentralized system theory are intimately connected with advances in the stochastic control problem with nonclassical information pattern. The basic assumptions and mathematical tools associated with the latter are summarized, and recommendations concerning future research are presented.

  1. Clearing and Labeling Techniques for Large-Scale Biological Tissues

    PubMed Central

    Seo, Jinyoung; Choe, Minjin; Kim, Sung-Yon

    2016-01-01

    Clearing and labeling techniques for large-scale biological tissues enable simultaneous extraction of molecular and structural information with minimal disassembly of the sample, facilitating the integration of molecular, cellular and systems biology across different scales. Recent years have witnessed an explosive increase in the number of such methods and their applications, reflecting heightened interest in organ-wide clearing and labeling across many fields of biology and medicine. In this review, we provide an overview and comparison of existing clearing and labeling techniques and discuss challenges and opportunities in the investigations of large-scale biological systems. PMID:27239813

  2. Large-scale liquid scintillation detectors for solar neutrinos

    NASA Astrophysics Data System (ADS)

    Benziger, Jay B.; Calaprice, Frank P.

    2016-04-01

    Large-scale liquid scintillation detectors are capable of providing spectral yields of the low energy solar neutrinos. These detectors require > 100 tons of liquid scintillator with high optical and radiopurity. In this paper requirements for low-energy neutrino detection by liquid scintillation are specified and the procedures to achieve low backgrounds in large-scale liquid scintillation detectors for solar neutrinos are reviewed. The designs, operations and achievements of Borexino, KamLAND and SNO+ in measuring the low-energy solar neutrino fluxes are reviewed.

  3. Contribution of peculiar shear motions to large-scale structure

    NASA Technical Reports Server (NTRS)

    Mueler, Hans-Reinhard; Treumann, Rudolf A.

    1994-01-01

    Self-gravitating shear flow instability simulations in a cold dark matter-dominated expanding Einstein-de Sitter universe have been performed. When the shear flow speed exceeds a certain threshold, self-gravitating Kelvin-Helmoholtz instability occurs, forming density voids and excesses along the shear flow layer which serve as seeds for large-scale structure formation. A possible mechanism for generating shear peculiar motions are velocity fluctuations induced by the density perturbations of the postinflation era. In this scenario, short scales grow earlier than large scales. A model of this kind may contribute to the cellular structure of the luminous mass distribution in the universe.

  4. Clearing and Labeling Techniques for Large-Scale Biological Tissues.

    PubMed

    Seo, Jinyoung; Choe, Minjin; Kim, Sung-Yon

    2016-06-30

    Clearing and labeling techniques for large-scale biological tissues enable simultaneous extraction of molecular and structural information with minimal disassembly of the sample, facilitating the integration of molecular, cellular and systems biology across different scales. Recent years have witnessed an explosive increase in the number of such methods and their applications, reflecting heightened interest in organ-wide clearing and labeling across many fields of biology and medicine. In this review, we provide an overview and comparison of existing clearing and labeling techniques and discuss challenges and opportunities in the investigations of large-scale biological systems. PMID:27239813

  5. Effects of small scale energy injection on large scales in turbulent reaction flows

    NASA Astrophysics Data System (ADS)

    Xuan, Yuan

    2014-11-01

    Turbulence causes the generation of eddies of various length scales. In turbulent non-reacting flows, most of the kinetic energy is contained in large scale turbulent structures and dissipated at small scales. This energy cascade process from large scales to small scales provides the foundation of a lot of turbulence models, especially for Large Eddy Simulations. However, in turbulent reacting flows, chemical energy is converted locally to heat and therefore deploys energy at the smallest scales. As such, effects of small scale energy injection due to combustion on large scale turbulent motion may become important. These effects are investigated in the case of auto-ignition under homogeneous isotropic turbulence. Impact of small scale heat release is examined by comparing various turbulent statistics (e.g. energy spectrum, two-point correlation functions, and structure functions) in the reacting case to the non-reacting case. Emphasis is placed on the identification of the most relevant turbulent quantities in reflecting such small-large scale interactions.

  6. Controlled synthesis of large-scale, uniform, vertically standing graphene for high-performance field emitters.

    PubMed

    Jiang, Lili; Yang, Tianzhong; Liu, Fei; Dong, Jing; Yao, Zhaohui; Shen, Chengmin; Deng, Shaozhi; Xu, Ningsheng; Liu, Yunqi; Gao, Hong-Jun

    2013-01-11

    Large-scale, uniform, vertically standing graphene with atomically thin edges are controllably synthesized on copper foil using a microwave-plasma chemical vapor deposition system. A growth mechanism for this system is proposed. This film shows excellent field-emission properties, with low turn-on field of 1.3 V μm(-1) , low threshold field of 3.0 V μm(-1) and a large field-enhancement factor more than 10 000. PMID:23135968

  7. Semiconductor Nanocrystal Quantum Dot Synthesis Approaches Towards Large-Scale Industrial Production for Energy Applications

    NASA Astrophysics Data System (ADS)

    Hu, Michael Z.; Zhu, Ting

    2015-12-01

    This paper reviews the experimental synthesis and engineering developments that focused on various green approaches and large-scale process production routes for quantum dots. Fundamental process engineering principles were illustrated. In relation to the small-scale hot injection method, our discussions focus on the non-injection route that could be scaled up with engineering stir-tank reactors. In addition, applications that demand to utilize quantum dots as "commodity" chemicals are discussed, including solar cells and solid-state lightings.

  8. The effect of chemical modification on the physico-chemical characteristics of halloysite: FTIR, XRF, and XRD studies

    NASA Astrophysics Data System (ADS)

    Szczepanik, Beata; Słomkiewicz, Piotr; Garnuszek, Magdalena; Czech, Kamil; Banaś, Dariusz; Kubala-Kukuś, Aldona; Stabrawa, Ilona

    2015-03-01

    The effect of chemical modification of halloysite from a Polish strip mine "Dunino" on the chemical composition and structure of this clay mineral was studied using infrared spectroscopy (ATR FT-IR), wavelength dispersive X-ray fluorescence (WDXRF), and X-ray powder diffraction (XRPD) methods. The results obtained by the WDXRF technique confirm that the content of silica and alumina was the highest for bleached halloysite samples and the lowest for acid-treated halloysite. A higher content of Fe2O3 in comparison to halloysite samples coming from other countries was observed for raw halloysite samples. XRPD diffraction pattern obtained for raw halloysite confirmed the presence of halloysite, kaolinite, hematite, and calcite minerals in the sample. Bleaching the halloysite removes (or significantly reduces) the content of other minerals present in the raw halloysite. The FT-IR spectra of the studied halloysite samples show in the 3700-3600 cm-1 region well-defined hydroxyl stretching bands characteristic for the kaolin-group minerals and bands associated with the vibrations of the aluminium-silicon skeleton in the 1400-1000 cm-1 region. Modifying halloysite with 4-chloro-aniline causes successive incorporation of amine into the BH sample.

  9. Sensitivity study of a large-scale air pollution model by using high-performance computations and Monte Carlo algorithms

    NASA Astrophysics Data System (ADS)

    Ostromsky, Tz.; Dimov, I.; Georgieva, R.; Marinov, P.; Zlatev, Z.

    2013-10-01

    In this paper we present some new results of our work on sensitivity analysis of a large-scale air pollution model, more specificly the Danish Eulerian Model (DEM). The main purpose of this study is to analyse the sensitivity of ozone concentrations with respect to the rates of some chemical reactions. The current sensitivity study considers the rates of six important chemical reactions and is done for the areas of several European cities with different geographical locations, climate, industrialization and population density. One of the most widely used variance-based techniques for sensitivity analysis, such as Sobol estimates and their modifications, have been used in this study. A vast number of numerical experiments with a specially adapted for the purpose version of the Danish Eulerian Model (SA-DEM) were carried out to compute global Sobol sensitivity measures. SA-DEM was implemented and run on two powerful cluster supercomputers: IBM Blue Gene/P, the most powerful parallel supercomputer in Bulgaria and IBM MareNostrum III, the most powerful parallel supercomputer in Spain. The refined (480 × 480) mesh version of the model was used in the experiments on MareNostrum III, which is a challenging computational problem even on such a powerful machine. Some optimizations of the code with respect to the parallel efficiency and the memory use were performed. Tables with performance results of a number of numerical experiments on IBM BlueGene/P and on IBM MareNostrum III are presented and analysed.

  10. Moon-based Earth Observation for Large Scale Geoscience Phenomena

    NASA Astrophysics Data System (ADS)

    Guo, Huadong; Liu, Guang; Ding, Yixing

    2016-07-01

    The capability of Earth observation for large-global-scale natural phenomena needs to be improved and new observing platform are expected. We have studied the concept of Moon as an Earth observation in these years. Comparing with manmade satellite platform, Moon-based Earth observation can obtain multi-spherical, full-band, active and passive information,which is of following advantages: large observation range, variable view angle, long-term continuous observation, extra-long life cycle, with the characteristics of longevity ,consistency, integrity, stability and uniqueness. Moon-based Earth observation is suitable for monitoring the large scale geoscience phenomena including large scale atmosphere change, large scale ocean change,large scale land surface dynamic change,solid earth dynamic change,etc. For the purpose of establishing a Moon-based Earth observation platform, we already have a plan to study the five aspects as follows: mechanism and models of moon-based observing earth sciences macroscopic phenomena; sensors' parameters optimization and methods of moon-based Earth observation; site selection and environment of moon-based Earth observation; Moon-based Earth observation platform; and Moon-based Earth observation fundamental scientific framework.

  11. Assuring Quality in Large-Scale Online Course Development

    ERIC Educational Resources Information Center

    Parscal, Tina; Riemer, Deborah

    2010-01-01

    Student demand for online education requires colleges and universities to rapidly expand the number of courses and programs offered online while maintaining high quality. This paper outlines two universities respective processes to assure quality in large-scale online programs that integrate instructional design, eBook custom publishing, Quality…

  12. Large-scale search for dark-matter axions

    SciTech Connect

    Hagmann, C.A., LLNL; Kinion, D.; Stoeffl, W.; Van Bibber, K.; Daw, E.J.; McBride, J.; Peng, H.; Rosenberg, L.J.; Xin, H.; Laveigne, J.; Sikivie, P.; Sullivan, N.S.; Tanner, D.B.; Moltz, D.M.; Powell, J.; Clarke, J.; Nezrick, F.A.; Turner, M.S.; Golubev, N.A.; Kravchuk, L.V.

    1998-01-01

    Early results from a large-scale search for dark matter axions are presented. In this experiment, axions constituting our dark-matter halo may be resonantly converted to monochromatic microwave photons in a high-Q microwave cavity permeated by a strong magnetic field. Sensitivity at the level of one important axion model (KSVZ) has been demonstrated.

  13. DESIGN OF LARGE-SCALE AIR MONITORING NETWORKS

    EPA Science Inventory

    The potential effects of air pollution on human health have received much attention in recent years. In the U.S. and other countries, there are extensive large-scale monitoring networks designed to collect data to inform the public of exposure risks to air pollution. A major crit...

  14. Over-driven control for large-scale MR dampers

    NASA Astrophysics Data System (ADS)

    Friedman, A. J.; Dyke, S. J.; Phillips, B. M.

    2013-04-01

    As semi-active electro-mechanical control devices increase in scale for use in real-world civil engineering applications, their dynamics become increasingly complicated. Control designs that are able to take these characteristics into account will be more effective in achieving good performance. Large-scale magnetorheological (MR) dampers exhibit a significant time lag in their force-response to voltage inputs, reducing the efficacy of typical controllers designed for smaller scale devices where the lag is negligible. A new control algorithm is presented for large-scale MR devices that uses over-driving and back-driving of the commands to overcome the challenges associated with the dynamics of these large-scale MR dampers. An illustrative numerical example is considered to demonstrate the controller performance. Via simulations of the structure using several seismic ground motions, the merits of the proposed control strategy to achieve reductions in various response parameters are examined and compared against several accepted control algorithms. Experimental evidence is provided to validate the improved capabilities of the proposed controller in achieving the desired control force levels. Through real-time hybrid simulation (RTHS), the proposed controllers are also examined and experimentally evaluated in terms of their efficacy and robust performance. The results demonstrate that the proposed control strategy has superior performance over typical control algorithms when paired with a large-scale MR damper, and is robust for structural control applications.

  15. Large-scale search for dark-matter axions

    SciTech Connect

    Kinion, D; van Bibber, K

    2000-08-30

    We review the status of two ongoing large-scale searches for axions which may constitute the dark matter of our Milky Way halo. The experiments are based on the microwave cavity technique proposed by Sikivie, and marks a ''second-generation'' to the original experiments performed by the Rochester-Brookhaven-Fermilab collaboration, and the University of Florida group.

  16. Large-Scale Innovation and Change in UK Higher Education

    ERIC Educational Resources Information Center

    Brown, Stephen

    2013-01-01

    This paper reflects on challenges universities face as they respond to change. It reviews current theories and models of change management, discusses why universities are particularly difficult environments in which to achieve large scale, lasting change and reports on a recent attempt by the UK JISC to enable a range of UK universities to employ…

  17. Global smoothing and continuation for large-scale molecular optimization

    SciTech Connect

    More, J.J.; Wu, Zhijun

    1995-10-01

    We discuss the formulation of optimization problems that arise in the study of distance geometry, ionic systems, and molecular clusters. We show that continuation techniques based on global smoothing are applicable to these molecular optimization problems, and we outline the issues that must be resolved in the solution of large-scale molecular optimization problems.

  18. The Large-Scale Structure of Scientific Method

    ERIC Educational Resources Information Center

    Kosso, Peter

    2009-01-01

    The standard textbook description of the nature of science describes the proposal, testing, and acceptance of a theoretical idea almost entirely in isolation from other theories. The resulting model of science is a kind of piecemeal empiricism that misses the important network structure of scientific knowledge. Only the large-scale description of…

  19. Individual Skill Differences and Large-Scale Environmental Learning

    ERIC Educational Resources Information Center

    Fields, Alexa W.; Shelton, Amy L.

    2006-01-01

    Spatial skills are known to vary widely among normal individuals. This project was designed to address whether these individual differences are differentially related to large-scale environmental learning from route (ground-level) and survey (aerial) perspectives. Participants learned two virtual environments (route and survey) with limited…

  20. Mixing Metaphors: Building Infrastructure for Large Scale School Turnaround

    ERIC Educational Resources Information Center

    Peurach, Donald J.; Neumerski, Christine M.

    2015-01-01

    The purpose of this analysis is to increase understanding of the possibilities and challenges of building educational infrastructure--the basic, foundational structures, systems, and resources--to support large-scale school turnaround. Building educational infrastructure often exceeds the capacity of schools, districts, and state education…

  1. Large-scale drift and Rossby wave turbulence

    NASA Astrophysics Data System (ADS)

    Harper, K. L.; Nazarenko, S. V.

    2016-08-01

    We study drift/Rossby wave turbulence described by the large-scale limit of the Charney–Hasegawa–Mima equation. We define the zonal and meridional regions as Z:= \\{{k} :| {k}y| \\gt \\sqrt{3}{k}x\\} and M:= \\{{k} :| {k}y| \\lt \\sqrt{3}{k}x\\} respectively, where {k}=({k}x,{k}y) is in a plane perpendicular to the magnetic field such that k x is along the isopycnals and k y is along the plasma density gradient. We prove that the only types of resonant triads allowed are M≤ftrightarrow M+Z and Z≤ftrightarrow Z+Z. Therefore, if the spectrum of weak large-scale drift/Rossby turbulence is initially in Z it will remain in Z indefinitely. We present a generalised Fjørtoft’s argument to find transfer directions for the quadratic invariants in the two-dimensional {k}-space. Using direct numerical simulations, we test and confirm our theoretical predictions for weak large-scale drift/Rossby turbulence, and establish qualitative differences with cases when turbulence is strong. We demonstrate that the qualitative features of the large-scale limit survive when the typical turbulent scale is only moderately greater than the Larmor/Rossby radius.

  2. Large Scale Field Campaign Contributions to Soil Moisture Remote Sensing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Large-scale field experiments have been an essential component of soil moisture remote sensing for over two decades. They have provided test beds for both the technology and science necessary to develop and refine satellite mission concepts. The high degree of spatial variability of soil moisture an...

  3. Large-scale V/STOL testing. [in wind tunnels

    NASA Technical Reports Server (NTRS)

    Koenig, D. G.; Aiken, T. N.; Aoyagi, K.; Falarski, M. D.

    1977-01-01

    Several facets of large-scale testing of V/STOL aircraft configurations are discussed with particular emphasis on test experience in the Ames 40- by 80-foot wind tunnel. Examples of powered-lift test programs are presented in order to illustrate tradeoffs confronting the planner of V/STOL test programs. It is indicated that large-scale V/STOL wind-tunnel testing can sometimes compete with small-scale testing in the effort required (overall test time) and program costs because of the possibility of conducting a number of different tests with a single large-scale model where several small-scale models would be required. The benefits of both high- and full-scale Reynolds numbers, more detailed configuration simulation, and number and type of onboard measurements increase rapidly with scale. Planning must be more detailed at large scale in order to balance the trade-offs between the increased costs, as number of measurements and model configuration variables increase and the benefits of larger amounts of information coming out of one test.

  4. Current Scientific Issues in Large Scale Atmospheric Dynamics

    NASA Technical Reports Server (NTRS)

    Miller, T. L. (Compiler)

    1986-01-01

    Topics in large scale atmospheric dynamics are discussed. Aspects of atmospheric blocking, the influence of transient baroclinic eddies on planetary-scale waves, cyclogenesis, the effects of orography on planetary scale flow, small scale frontal structure, and simulations of gravity waves in frontal zones are discussed.

  5. Large-Scale Machine Learning for Classification and Search

    ERIC Educational Resources Information Center

    Liu, Wei

    2012-01-01

    With the rapid development of the Internet, nowadays tremendous amounts of data including images and videos, up to millions or billions, can be collected for training machine learning models. Inspired by this trend, this thesis is dedicated to developing large-scale machine learning techniques for the purpose of making classification and nearest…

  6. Considerations for Managing Large-Scale Clinical Trials.

    ERIC Educational Resources Information Center

    Tuttle, Waneta C.; And Others

    1989-01-01

    Research management strategies used effectively in a large-scale clinical trial to determine the health effects of exposure to Agent Orange in Vietnam are discussed, including pre-project planning, organization according to strategy, attention to scheduling, a team approach, emphasis on guest relations, cross-training of personnel, and preparing…

  7. Ecosystem resilience despite large-scale altered hydro climatic conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Climate change is predicted to increase both drought frequency and duration, and when coupled with substantial warming, will establish a new hydroclimatological paradigm for many regions. Large-scale, warm droughts have recently impacted North America, Africa, Europe, Amazonia, and Australia result...

  8. Lessons from Large-Scale Renewable Energy Integration Studies: Preprint

    SciTech Connect

    Bird, L.; Milligan, M.

    2012-06-01

    In general, large-scale integration studies in Europe and the United States find that high penetrations of renewable generation are technically feasible with operational changes and increased access to transmission. This paper describes other key findings such as the need for fast markets, large balancing areas, system flexibility, and the use of advanced forecasting.

  9. Probabilistic Cuing in Large-Scale Environmental Search

    ERIC Educational Resources Information Center

    Smith, Alastair D.; Hood, Bruce M.; Gilchrist, Iain D.

    2010-01-01

    Finding an object in our environment is an important human ability that also represents a critical component of human foraging behavior. One type of information that aids efficient large-scale search is the likelihood of the object being in one location over another. In this study we investigated the conditions under which individuals respond to…

  10. Extracting Useful Semantic Information from Large Scale Corpora of Text

    ERIC Educational Resources Information Center

    Mendoza, Ray Padilla, Jr.

    2012-01-01

    Extracting and representing semantic information from large scale corpora is at the crux of computer-assisted knowledge generation. Semantic information depends on collocation extraction methods, mathematical models used to represent distributional information, and weighting functions which transform the space. This dissertation provides a…

  11. Efficient On-Demand Operations in Large-Scale Infrastructures

    ERIC Educational Resources Information Center

    Ko, Steven Y.

    2009-01-01

    In large-scale distributed infrastructures such as clouds, Grids, peer-to-peer systems, and wide-area testbeds, users and administrators typically desire to perform "on-demand operations" that deal with the most up-to-date state of the infrastructure. However, the scale and dynamism present in the operating environment make it challenging to…

  12. Large-Scale Environmental Influences on Aquatic Animal Health

    EPA Science Inventory

    In the latter portion of the 20th century, North America experienced numerous large-scale mortality events affecting a broad diversity of aquatic animals. Short-term forensic investigations of these events have sometimes characterized a causative agent or condition, but have rare...

  13. Newton iterative methods for large scale nonlinear systems

    SciTech Connect

    Walker, H.F.; Turner, K.

    1993-01-01

    Objective is to develop robust, efficient Newton iterative methods for general large scale problems well suited for discretizations of partial differential equations, integral equations, and other continuous problems. A concomitant objective is to develop improved iterative linear algebra methods. We first outline research on Newton iterative methods and then review work on iterative linear algebra methods. (DLC)

  14. Implicit solution of large-scale radiation diffusion problems

    SciTech Connect

    Brown, P N; Graziani, F; Otero, I; Woodward, C S

    2001-01-04

    In this paper, we present an efficient solution approach for fully implicit, large-scale, nonlinear radiation diffusion problems. The fully implicit approach is compared to a semi-implicit solution method. Accuracy and efficiency are shown to be better for the fully implicit method on both one- and three-dimensional problems with tabular opacities taken from the LEOS opacity library.

  15. Resilience of Florida Keys coral communities following large scale disturbances

    EPA Science Inventory

    The decline of coral reefs in the Caribbean over the last 40 years has been attributed to multiple chronic stressors and episodic large-scale disturbances. This study assessed the resilience of coral communities in two different regions of the Florida Keys reef system between 199...

  16. Large Scale Survey Data in Career Development Research

    ERIC Educational Resources Information Center

    Diemer, Matthew A.

    2008-01-01

    Large scale survey datasets have been underutilized but offer numerous advantages for career development scholars, as they contain numerous career development constructs with large and diverse samples that are followed longitudinally. Constructs such as work salience, vocational expectations, educational expectations, work satisfaction, and…

  17. Polymers in 2D Turbulence: Suppression of Large Scale Fluctuations

    NASA Astrophysics Data System (ADS)

    Amarouchene, Y.; Kellay, H.

    2002-08-01

    Small quantities of a long chain molecule or polymer affect two-dimensional turbulence in unexpected ways. Their presence inhibits the transfers of energy to large scales causing their suppression in the energy density spectrum. This also leads to the change of the spectral properties of a passive scalar which turns out to be highly sensitive to the presence of energy transfers.

  18. Creating a Large-Scale, Third Generation, Distance Education Course.

    ERIC Educational Resources Information Center

    Weller, Martin James

    2000-01-01

    Outlines the course development of an introductory large-scale distance education course offered via the World Wide Web at the Open University in the United Kingdom. Topics include developing appropriate student skills; maintaining quality control; facilitating easy updating of material; ensuring student interaction; and making materials…

  19. Cosmic strings and the large-scale structure

    NASA Technical Reports Server (NTRS)

    Stebbins, Albert

    1988-01-01

    A possible problem for cosmic string models of galaxy formation is presented. If very large voids are common and if loop fragmentation is not much more efficient than presently believed, then it may be impossible for string scenarios to produce the observed large-scale structure with Omega sub 0 = 1 and without strong environmental biasing.

  20. International Large-Scale Assessments: What Uses, What Consequences?

    ERIC Educational Resources Information Center

    Johansson, Stefan

    2016-01-01

    Background: International large-scale assessments (ILSAs) are a much-debated phenomenon in education. Increasingly, their outcomes attract considerable media attention and influence educational policies in many jurisdictions worldwide. The relevance, uses and consequences of these assessments are often the focus of research scrutiny. Whilst some…

  1. Measurement, Sampling, and Equating Errors in Large-Scale Assessments

    ERIC Educational Resources Information Center

    Wu, Margaret

    2010-01-01

    In large-scale assessments, such as state-wide testing programs, national sample-based assessments, and international comparative studies, there are many steps involved in the measurement and reporting of student achievement. There are always sources of inaccuracies in each of the steps. It is of interest to identify the source and magnitude of…

  2. A bibliographical surveys of large-scale systems

    NASA Technical Reports Server (NTRS)

    Corliss, W. R.

    1970-01-01

    A limited, partly annotated bibliography was prepared on the subject of large-scale system control. Approximately 400 references are divided into thirteen application areas, such as large societal systems and large communication systems. A first-author index is provided.

  3. Large-Scale Networked Virtual Environments: Architecture and Applications

    ERIC Educational Resources Information Center

    Lamotte, Wim; Quax, Peter; Flerackers, Eddy

    2008-01-01

    Purpose: Scalability is an important research topic in the context of networked virtual environments (NVEs). This paper aims to describe the ALVIC (Architecture for Large-scale Virtual Interactive Communities) approach to NVE scalability. Design/methodology/approach: The setup and results from two case studies are shown: a 3-D learning environment…

  4. Decomposition and coordination of large-scale operations optimization

    NASA Astrophysics Data System (ADS)

    Cheng, Ruoyu

    Nowadays, highly integrated manufacturing has resulted in more and more large-scale industrial operations. As one of the most effective strategies to ensure high-level operations in modern industry, large-scale engineering optimization has garnered a great amount of interest from academic scholars and industrial practitioners. Large-scale optimization problems frequently occur in industrial applications, and many of them naturally present special structure or can be transformed to taking special structure. Some decomposition and coordination methods have the potential to solve these problems at a reasonable speed. This thesis focuses on three classes of large-scale optimization problems: linear programming, quadratic programming, and mixed-integer programming problems. The main contributions include the design of structural complexity analysis for investigating scaling behavior and computational efficiency of decomposition strategies, novel coordination techniques and algorithms to improve the convergence behavior of decomposition and coordination methods, as well as the development of a decentralized optimization framework which embeds the decomposition strategies in a distributed computing environment. The complexity study can provide fundamental guidelines to practical applications of the decomposition and coordination methods. In this thesis, several case studies imply the viability of the proposed decentralized optimization techniques for real industrial applications. A pulp mill benchmark problem is used to investigate the applicability of the LP/QP decentralized optimization strategies, while a truck allocation problem in the decision support of mining operations is used to study the MILP decentralized optimization strategies.

  5. Response of Tradewind Cumuli to Large-Scale Processes.

    NASA Astrophysics Data System (ADS)

    Soong, S.-T.; Ogura, Y.

    1980-09-01

    The two-dimensional slab-symmetric numerical cloud model used by Soong and Ogura (1973) for studying the evolution of an isolated cumulus cloud is extended to investigate the statistical properties of cumulus clouds which would be generated under a given large-scale forcing composed of the horizontal advection of temperature and water vapor mixing ratio, vertical velocity, sea surface temperature and radiative cooling. Random disturbances of small amplitude are introduced into the model at low levels to provide random motion for cloud formation.The model is applied to a case of suppressed weather conditions during BOMEX for the period 22-23 June 1969 when a nearly steady state prevailed. The composited temperature and mixing ratio profiles of these two days are used as initial conditions and the time-independent large-scale forcing terms estimated from the observations are applied to the model. The result of numerical integration shows that a number of small clouds start developing after 1 h. Some of them decay quickly, but some of them develop and reach the tradewind inversion. After a few hours of simulation, the vertical profiles of the horizontally averaged temperature and moisture are found to deviate only slightly from the observed profiles, indicating that the large-scale effect and the feedback effects of clouds on temperature and mixing ratio reach an equilibrium state. The three major components of the cloud feedback effect, i.e., condensation, evaporation and vertical fluxes associated with the clouds, are determined from the model output. The vertical profiles of vertical heat and moisture fluxes in the subcloud layer in the model are found to be in general agreement with the observations.Sensitivity tests of the model are made for different magnitudes of the large-scale vertical velocity. The most striking result is that the temperature and humidity in the cloud layer below the inversion do not change significantly in spite of a relatively large

  6. FEASIBILITY OF LARGE-SCALE OCEAN CO2 SEQUESTRATION

    SciTech Connect

    Dr. Peter Brewer; Dr. James Barry

    2002-09-30

    We have continued to carry out creative small-scale experiments in the deep ocean to investigate the science underlying questions of possible future large-scale deep-ocean CO{sub 2} sequestration as a means of ameliorating greenhouse gas growth rates in the atmosphere. This project is closely linked to additional research funded by the DoE Office of Science, and to support from the Monterey Bay Aquarium Research Institute. The listing of project achievements here over the past year reflects these combined resources. Within the last project year we have: (1) Published a significant workshop report (58 pages) entitled ''Direct Ocean Sequestration Expert's Workshop'', based upon a meeting held at MBARI in 2001. The report is available both in hard copy, and on the NETL web site. (2) Carried out three major, deep ocean, (3600m) cruises to examine the physical chemistry, and biological consequences, of several liter quantities released on the ocean floor. (3) Carried out two successful short cruises in collaboration with Dr. Izuo Aya and colleagues (NMRI, Osaka, Japan) to examine the fate of cold (-55 C) CO{sub 2} released at relatively shallow ocean depth. (4) Carried out two short cruises in collaboration with Dr. Costas Tsouris, ORNL, to field test an injection nozzle designed to transform liquid CO{sub 2} into a hydrate slurry at {approx}1000m depth. (5) In collaboration with Prof. Jill Pasteris (Washington University) we have successfully accomplished the first field test of a deep ocean laser Raman spectrometer for probing in situ the physical chemistry of the CO{sub 2} system. (6) Submitted the first major paper on biological impacts as determined from our field studies. (7) Submitted a paper on our measurements of the fate of a rising stream of liquid CO{sub 2} droplets to Environmental Science & Technology. (8) Have had accepted for publication in Eos the first brief account of the laser Raman spectrometer success. (9) Have had two papers submitted for the

  7. A method of orbital analysis for large-scale first-principles simulations

    SciTech Connect

    Ohwaki, Tsukuru; Otani, Minoru; Ozaki, Taisuke

    2014-06-28

    An efficient method of calculating the natural bond orbitals (NBOs) based on a truncation of the entire density matrix of a whole system is presented for large-scale density functional theory calculations. The method recovers an orbital picture for O(N) electronic structure methods which directly evaluate the density matrix without using Kohn-Sham orbitals, thus enabling quantitative analysis of chemical reactions in large-scale systems in the language of localized Lewis-type chemical bonds. With the density matrix calculated by either an exact diagonalization or O(N) method, the computational cost is O(1) for the calculation of NBOs associated with a local region where a chemical reaction takes place. As an illustration of the method, we demonstrate how an electronic structure in a local region of interest can be analyzed by NBOs in a large-scale first-principles molecular dynamics simulation for a liquid electrolyte bulk model (propylene carbonate + LiBF{sub 4})

  8. The Revolution and Evolution of Shotgun Proteomics for Large-Scale Proteome Analysis

    PubMed Central

    Yates, John R.

    2013-01-01

    Mass spectrometry has evolved at an exponential rate over the last 100 years. Innovations in the development of mass spectrometers have created powerful instruments capable of analyzing a wide range of targets, from rare atoms and molecules to very large molecules such as a proteins, protein complexes and DNA. These performance gains have been driven by sustaining innovations, punctuated by the occasional disruptive innovation. The use of mass spectrometry for proteome analysis was driven by disruptive innovations that created a capability for large-scale analysis of proteins and modifications. PMID:23294060

  9. Physical and chemical basics of modification of poly(vinyl chloride) by means of polyisocyanate

    NASA Astrophysics Data System (ADS)

    Islamov, Anvar; Fakhrutdinova, Venera; Abdrakhmanova, Lyailya

    2016-01-01

    This research presents data relating to polyvinyl chloride (PVC) modification by means of reactive oligomer and measures technological, physical and mechanical properties of the modified composites. Polyisocyanate (PIC) has been chosen as the modifying reactive oligomer. It has been shown that insertion of the oligomer has a double effect on PVC. Primarily, PIC produces a plasticizing effect on PVC and in particular leads to an increase in thermal stability and melt flow index at the stage of processing. In addition, the molded PVC composites possess higher strength properties and lower deformability when exposed to temperature because of chemical transformations of PIC in polymer matrix and, as the result, the formation of cross-linked systems takes place. In this case, semi-interpenetrating structures are formed based on cross-linked products of PIC chemical transformations homogeneously distributed in the PVC matrix. It has been determined by means of IR-spectroscopy that the basic products of PIC curing are compounds with urea and biuret groups which leads to modifying effect on PVC especially: increase in strength, thermal and mechanical properties, and chemical resistance.

  10. Surface modification of porous poly(tetrafluoraethylene) film by a simple chemical oxidation treatment

    NASA Astrophysics Data System (ADS)

    Wang, Shifang; Li, Juan; Suo, Jinping; Luo, Tianzhi

    2010-01-01

    A simple, inexpensive and environmental chemical treatment process, i.e., treating porous poly(tetrafluoroethylene) (PTFE) films by a mixture of potassium permanganate solution and nitric acid, was proposed to improve the hydrophilicity of PTFE. To evaluate the effectiveness of this strong oxidation treatment, contact angle measurement was performed. The effects of treatment time and temperature on the contact angle of PTFE were studied as well. The results showed that the chemical modification decreased contact angle of as-received PTFE film from 133 ± 3° to 30 ± 4° treated at 100 °C for 3 h, effectively converting the hydrophobic PTFE to a hydrophilic PTFE matrix. The changes in chemical structure, surface compositions and crystal structure of PTFE were examined by attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR), X-ray photoelectron spectroscopy (XPS), environmental scanning electron microscopy (ESEM), X-ray diffraction (XRD), respectively. It was found that the F/C atomic ratio decreased from untreated 1.65-0.10 treated by the mixture at 100 °C for 3 h. Hydrophilic groups such as carbonyl (C dbnd O) and hydroxyl ( sbnd OH) were introduced on the surface of PTFE after treatment. Furthermore, hydrophilic compounds K 0.27MnO 2·0.54H 2O was absorbed on the surface of porous PTFE film. Both the introduction of hydrophilic groups and absorption of hydrophilic compounds contribute to the significantly decreased contact angle of PTFE.

  11. Identification of active site residues of Fenugreek β-amylase: chemical modification and in silico approach.

    PubMed

    Srivastava, Garima; Singh, Vinay K; Kayastha, Arvind M

    2014-10-01

    The amino acid sequence of Fenugreek β-amylase is not available in protein data bank. Therefore, an attempt has been made to identify the catalytic amino acid residues of enzyme by employing studies of pH dependence of enzyme catalysis, chemical modification and bioinformatics. Treatment of purified Fenugreek β-amylase with EDAC in presence of glycine methyl ester and sulfhydryl group specific reagents (IAA, NEM and p-CMB), followed a pseudo first-order kinetics and resulted in effective inactivation of enzyme. The reaction with EDAC in presence of NTEE (3-nitro-l-tyrosine ethylester) resulted into modification of two carboxyl groups per molecule of enzyme and presence of one accessible sulfhydryl group at the active site, per molecule of enzyme was ascertained by titration with DTNB. The above results were supported by the prevention of inactivation of enzyme in presence of substrate. Based on MALDI-TOF analysis of purified Fenugreek β-amylase and MASCOT search, β-amylase of Medicago sativa was found to be the best match. To further confirm the amino acid involved in catalysis, homology modelling of β-amylase of M. sativa was performed. The sequence alignment, superimposition of template and target models, along with study of interactions involved in docking of sucrose and maltose at the active site, led to identification of Glu187, Glu381 and Cys344 as active site residues. PMID:25179433

  12. Mass Spectrometric Quantification of Histone Post-translational Modifications by a Hybrid Chemical Labeling Method

    PubMed Central

    Maile, Tobias M.; Izrael-Tomasevic, Anita; Cheung, Tommy; Guler, Gulfem D.; Tindell, Charles; Masselot, Alexandre; Liang, Jun; Zhao, Feng; Trojer, Patrick; Classon, Marie; Arnott, David

    2015-01-01

    Mass spectrometry is a powerful alternative to antibody-based methods for the analysis of histone post-translational modifications (marks). A key development in this approach was the deliberate propionylation of histones to improve sequence coverage across the lysine-rich and hydrophilic tails that bear most modifications. Several marks continue to be problematic however, particularly di- and tri-methylated lysine 4 of histone H3 which we found to be subject to substantial and selective losses during sample preparation and liquid chromatography-mass spectrometry. We developed a new method employing a “one-pot” hybrid chemical derivatization of histones, whereby an initial conversion of free lysines to their propionylated forms under mild aqueous conditions is followed by trypsin digestion and labeling of new peptide N termini with phenyl isocyanate. High resolution mass spectrometry was used to collect qualitative and quantitative data, and a novel web-based software application (Fishtones) was developed for viewing and quantifying histone marks in the resulting data sets. Recoveries of 53 methyl, acetyl, and phosphoryl marks on histone H3.1 were improved by an average of threefold overall, and over 50-fold for H3K4 di- and tri-methyl marks. The power of this workflow for epigenetic research and drug discovery was demonstrated by measuring quantitative changes in H3K4 trimethylation induced by small molecule inhibitors of lysine demethylases and siRNA knockdown of epigenetic modifiers ASH2L and WDR5. PMID:25680960

  13. Surface modification of poly(ethylene terephthalate) fabric via photo-chemical reaction of dimethylaminopropyl methacrylamide

    NASA Astrophysics Data System (ADS)

    Mohamed, Nasser H.; Bahners, Thomas; Wego, Andreas; Gutmann, Jochen S.; Ulbricht, Mathias

    2012-10-01

    Photo-chemical reactions and surface modifications of poly(ethylene terephthalate) (PET) fabrics with the monomer dimethylaminopropyl methacrylamide (DMAPMA) and benzophenone (BP) as photo-initiator using a broad-band UV lamp source were investigated. The tertiary amino groups of the grafted poly(DMAPMA) chains were subsequently quaternized with alkyl bromides of different chain lengths to establish antibacterial activity. The surface composition, structure and morphology of modified PET fabrics were characterized by Fourier transform infrared spectroscopy (FTIR/ATR), X-ray photoelectron spectroscopy (XPS) and scanning electron microscopy (SEM). To evaluate the amount of quaternary and tertiary ammonium groups on the modified surface, PET was dyed with an acid dye which binds to the ammonium groups. Therefore, the color depth is a direct indicator of the amount of ammonium groups. The resulting antibacterial activity of the modified PET fabrics was tested with Escherichia coli. The results of all experiments show that a photochemical modification of PET is possible using DMAPMA, benzophenone and UV light. Also, the quaternization of tertiary amino groups as well as the increase in antibacterial activity of the modified PET by the established quaternary ammonium groups were successful.

  14. A Decentralized Multivariable Robust Adaptive Voltage and Speed Regulator for Large-Scale Power Systems

    NASA Astrophysics Data System (ADS)

    Okou, Francis A.; Akhrif, Ouassima; Dessaint, Louis A.; Bouchard, Derrick

    2013-05-01

    This papter introduces a decentralized multivariable robust adaptive voltage and frequency regulator to ensure the stability of large-scale interconnnected generators. Interconnection parameters (i.e. load, line and transormer parameters) are assumed to be unknown. The proposed design approach requires the reformulation of conventiaonal power system models into a multivariable model with generator terminal voltages as state variables, and excitation and turbine valve inputs as control signals. This model, while suitable for the application of modern control methods, introduces problems with regards to current design techniques for large-scale systems. Interconnection terms, which are treated as perturbations, do not meet the common matching condition assumption. A new adaptive method for a certain class of large-scale systems is therefore introduces that does not require the matching condition. The proposed controller consists of nonlinear inputs that cancel some nonlinearities of the model. Auxiliary controls with linear and nonlinear components are used to stabilize the system. They compensate unknown parametes of the model by updating both the nonlinear component gains and excitation parameters. The adaptation algorithms involve the sigma-modification approach for auxiliary control gains, and the projection approach for excitation parameters to prevent estimation drift. The computation of the matrix-gain of the controller linear component requires the resolution of an algebraic Riccati equation and helps to solve the perturbation-mismatching problem. A realistic power system is used to assess the proposed controller performance. The results show that both stability and transient performance are considerably improved following a severe contingency.

  15. Large-Scale Impact Cratering and Early Earth Evolution

    NASA Technical Reports Server (NTRS)

    Grieve, R. A. F.; Cintala, M. J.

    1997-01-01

    The surface of the Moon attests to the importance of large-scale impact in its early crustal evolution. Previous models of the effects of a massive bombardment on terrestrial crustal evolution have relied on analogies with the Moon, with allowances for the presence of water and a thinner lithosphere. It is now apparent that strict lunar-terrestrial analogies are incorrect because of the "differential scaling" of crater dimensions and melt volumes with event size and planetary gravity. Impact melt volumes and "ancient cavity dimensions for specific impacts were modeled according to previous procedures. In the terrestrial case, the melt volume (V(sub m)) exceeds that of the transient cavity (V(sub tc)) at diameters > or = 400 km. This condition is reached on the Moon only with transient cavity diameters > or = 3000 km, equivalent to whole Moon melting. The melt volumes in these large impact events are minimum estimates, since, at these sizes, the higher temperature of the target rocks at depth will increase melt production. Using the modification-scaling relation of Croft, a transient cavity diameter of about 400 km in the terrestrial environment corresponds to an expected final impact "basin" diameter of about 900 km. Such a "basin" would be comparable in dimensions to the lunar basin Orientale. This 900-km "basin" on the early Earth, however, would not have had the appearance of Orientale. It would have been essentially a melt pool, and, morphologically, would have had more in common with the palimpsests structures on Callisto and Ganymede. With the terrestrial equivalents to the large multiring basins of the Moon being manifested as muted palimpsest-like structures filled with impact melt, it is unlikely they played a role in establishing the freeboard on the early Earth. The composition of the massive impact melt sheets (> 10 (exp 7) cu km) produced in "basin-forming" events on the early Earth would have most likely ranged from basaltic to more mafic for the

  16. Use of hydrostatic pressure for modulation of protein chemical modification and enzymatic selectivity.

    PubMed

    Makarov, Alexey A; Helmy, Roy; Joyce, Leo; Reibarkh, Mikhail; Maust, Mathew; Ren, Sumei; Mergelsberg, Ingrid; Welch, Christopher J

    2016-05-11

    Using hydrostatic pressure to induce protein conformational changes can be a powerful tool for altering the availability of protein reactive sites and for changing the selectivity of enzymatic reactions. Using a pressure apparatus, it has been demonstrated that hydrostatic pressure can be used to modulate the reactivity of lysine residues of the protein ubiquitin with a water-soluble amine-specific homobifunctional coupling agent. Fewer reactive lysine residues were observed when the reaction was carried out under elevated pressure of 3 kbar, consistent with a pressure-induced conformational change of ubiquitin that results in fewer exposed lysine residues. Additionally, modulation of the stereoselectivity of an enzymatic transamination reaction was observed at elevated hydrostatic pressure. In one case, the minor diasteromeric product formed at atmospheric pressure became the major product at elevated pressure. Such pressure-induced alterations of protein reactivity may provide an important new tool for enzymatic reactions and the chemical modification of proteins. PMID:27088756

  17. Comparison of surface modifications of poly(ether urethanes) by chemical infusion and graft polymerization

    SciTech Connect

    Wrobleski, D.A.; Cash, D.L.; Hermes, R.E.

    1988-01-01

    Our approach to surface modification uses the chemical infusion process to introduce materials into the outermost layer of the polymeric material, thereby altering the surface without changing the bulk properties of the polymer. The infused materials may slowly diffuse out of the infusion layer if they are volatile or highly mobile. However, if polymeric infusant materials are employed, they may become chain entangled with the host polymer and result in a permanently modified surface. A second approach utilizes photo-initiated graft polymerization of poly(ether urethanes) with an appropriate monomer. We have explored both of these methods by examining the infusion of polyvinylpyrrolidone (PVP) and poly(ethylene glycol) (PEG) into commercially available poly(ether urethanes) and the graft polymerization of N-vinyl pyrrolidone onto poly(ether urethanes). Results are presented here. 7 refs., 1 tab.

  18. Direct tunneling through high-κ amorphous HfO{sub 2}: Effects of chemical modification

    SciTech Connect

    Wang, Yin Yu, Zhizhou; Zahid, Ferdows; Wang, Jian; Liu, Lei; Zhu, Yu; Guo, Hong

    2014-07-14

    We report first principles modeling of quantum tunneling through amorphous HfO{sub 2} dielectric layer of metal-oxide-semiconductor (MOS) nanostructures in the form of n-Si/HfO{sub 2}/Al. In particular, we predict that chemically modifying the amorphous HfO{sub 2} barrier by doping N and Al atoms in the middle region—far from the two interfaces of the MOS structure—can reduce the gate-to-channel tunnel leakage by more than one order of magnitude. Several other types of modification are found to enhance tunneling or induce substantial band bending in the Si, both are not desired from leakage point of view. By analyzing transmission coefficients and projected density of states, the microscopic physics of electron traversing the tunnel barrier with or without impurity atoms in the high-κ dielectric is revealed.

  19. Identification of Catalytic Amino Acid Residues by Chemical Modification in Dextranase.

    PubMed

    Ko, Jin-A; Nam, Seung-Hee; Kim, Doman; Lee, Jun-Ho; Kim, Young-Min

    2016-05-28

    A novel endodextranase isolated from Paenibacillus sp. was found to produce isomaltotetraose and small amounts of cycloisomaltooligosaccharides with a degree of polymerization of 7-14 from dextran. To determine the active site, the enzyme was modified with 1-ethyl-3-[3- (dimethylamino)-propyl]-carbodiimide (EDC) and α-epoxyalkyl α-glucosides (EAGs), an affinity labeling reagent. The inactivation followed pseudo first-order kinetics. Kinetic analysis and chemical modification using EDC and EAGs indicated that carboxyl groups are essential for the enzymatic activity. Three Asp and one Glu residues were identified as candidate catalytic amino acids, since these residues are completely conserved across the GH family of 66 enzymes. Replacement of Asp189, Asp340, or Glu412 completely abolished the enzyme activity, indicating that these residues are essential for catalytic activity. PMID:26907761

  20. Heat-induced Irreversible Denaturation of the Camelid Single Domain VHH Antibody Is Governed by Chemical Modifications

    PubMed Central

    Akazawa-Ogawa, Yoko; Takashima, Mizuki; Lee, Young-Ho; Ikegami, Takahisa; Goto, Yuji; Uegaki, Koichi; Hagihara, Yoshihisa

    2014-01-01

    The variable domain of camelid heavy chain antibody (VHH) is highly heat-resistant and is therefore ideal for many applications. Although understanding the process of heat-induced irreversible denaturation is essential to improve the efficacy of VHH, its inactivation mechanism remains unclear. Here, we showed that chemical modifications predominantly governed the irreversible denaturation of VHH at high temperatures. After heat treatment, the activity of VHH was dependent only on the incubation time at 90 °C and was insensitive to the number of heating (90 °C)-cooling (20 °C) cycles, indicating a negligible role for folding/unfolding intermediates on permanent denaturation. The residual activity was independent of concentration; therefore, VHH lost its activity in a unimolecular manner, not by aggregation. A VHH mutant lacking Asn, which is susceptible to chemical modifications, had significantly higher heat resistance than did the wild-type protein, indicating the importance of chemical modifications to VHH denaturation. PMID:24739391

  1. LARGE-SCALE MOTIONS IN THE PERSEUS GALAXY CLUSTER

    SciTech Connect

    Simionescu, A.; Werner, N.; Urban, O.; Allen, S. W.; Fabian, A. C.; Sanders, J. S.; Mantz, A.; Nulsen, P. E. J.; Takei, Y.

    2012-10-01

    By combining large-scale mosaics of ROSAT PSPC, XMM-Newton, and Suzaku X-ray observations, we present evidence for large-scale motions in the intracluster medium of the nearby, X-ray bright Perseus Cluster. These motions are suggested by several alternating and interleaved X-ray bright, low-temperature, low-entropy arcs located along the east-west axis, at radii ranging from {approx}10 kpc to over a Mpc. Thermodynamic features qualitatively similar to these have previously been observed in the centers of cool-core clusters, and were successfully modeled as a consequence of the gas sloshing/swirling motions induced by minor mergers. Our observations indicate that such sloshing/swirling can extend out to larger radii than previously thought, on scales approaching the virial radius.

  2. Generating Large-Scale Longitudinal Data Resources for Aging Research

    PubMed Central

    Hofer, Scott M.

    2011-01-01

    Objectives. The need for large studies and the types of large-scale data resources (LSDRs) are discussed along with their general scientific utility, role in aging research, and affordability. The diversification of approaches to large-scale data resourcing is described in order to facilitate their use in aging research. Methods. The need for LSDRs is discussed in terms of (a) large sample size; (b) longitudinal design; (c) as platforms for additional investigator-initiated research projects; and (d) broad-based access to core genetic, biological, and phenotypic data. Discussion. It is concluded that a “lite-touch, lo-tech, lo-cost” approach to LSDRs is a viable strategy for the development of LSDRs and would enhance the likelihood of LSDRs being established which are dedicated to the wide range of important aging-related issues. PMID:21743049

  3. Lagrangian space consistency relation for large scale structure

    NASA Astrophysics Data System (ADS)

    Horn, Bart; Hui, Lam; Xiao, Xiao

    2015-09-01

    Consistency relations, which relate the squeezed limit of an (N+1)-point correlation function to an N-point function, are non-perturbative symmetry statements that hold even if the associated high momentum modes are deep in the nonlinear regime and astrophysically complex. Recently, Kehagias & Riotto and Peloso & Pietroni discovered a consistency relation applicable to large scale structure. We show that this can be recast into a simple physical statement in Lagrangian space: that the squeezed correlation function (suitably normalized) vanishes. This holds regardless of whether the correlation observables are at the same time or not, and regardless of whether multiple-streaming is present. The simplicity of this statement suggests that an analytic understanding of large scale structure in the nonlinear regime may be particularly promising in Lagrangian space.

  4. Instrumentation Development for Large Scale Hypersonic Inflatable Aerodynamic Decelerator Characterization

    NASA Technical Reports Server (NTRS)

    Swanson, Gregory T.; Cassell, Alan M.

    2011-01-01

    Hypersonic Inflatable Aerodynamic Decelerator (HIAD) technology is currently being considered for multiple atmospheric entry applications as the limitations of traditional entry vehicles have been reached. The Inflatable Re-entry Vehicle Experiment (IRVE) has successfully demonstrated this technology as a viable candidate with a 3.0 m diameter vehicle sub-orbital flight. To further this technology, large scale HIADs (6.0 8.5 m) must be developed and tested. To characterize the performance of large scale HIAD technology new instrumentation concepts must be developed to accommodate the flexible nature inflatable aeroshell. Many of the concepts that are under consideration for the HIAD FY12 subsonic wind tunnel test series are discussed below.

  5. Large-scale processes in the solar nebula

    NASA Technical Reports Server (NTRS)

    Boss, A. P.

    1994-01-01

    Theoretical models of the structure of a minimum mass solar nebula should be able to provide the physical context to help evaluate the efficacy of any mechanism proposed for the formation of chondrules or Ca, Al-rich inclusions (CAI's). These models generally attempt to use the equations of radiative hydrodynamics to calculate the large-scale structure of the solar nebula throughout the planet-forming region. In addition, it has been suggested that chondrules and CAI's (=Ch&CAI's) may have been formed as a direct result of large-scale nebula processing such as passage of material through high-temperature regions associated with the global structure of the nebula. In this report we assess the status of global models of solar nebula structure and of various related mechanisms that have been suggested for Ch and CAI formation.

  6. Planar Doppler Velocimetry for Large-Scale Wind Tunnel Applications

    NASA Technical Reports Server (NTRS)

    McKenzie, Robert L.

    1998-01-01

    Planar Doppler Velocimetry (PDV) concepts using a pulsed laser are described and the obtainable minimum resolved velocities in large-scale wind tunnels are evaluated. Velocity-field measurements are shown to be possible at ranges of tens of meters and with single pulse resolutions as low as 2 m/s. Velocity measurements in the flow of a low-speed, turbulent jet are reported that demonstrate the ability of PDV to acquire both average velocity fields and their fluctuation amplitudes, using procedures that are compatible with large-scale facility operations. The advantages of PDV over current Laser Doppler Anemometry and Particle Image Velocimetry techniques appear to be significant for applications to large facilities.

  7. Large Scale Diffuse X-ray Emission from Abell 3571

    NASA Technical Reports Server (NTRS)

    Molnar, Sandor M.; White, Nicholas E. (Technical Monitor)

    2001-01-01

    Observations of the Luman alpha forest suggest that there are many more baryons at high redshift than we can find in the Universe nearby. The largest known concentration of baryons in the nearby Universe is the Shapley supercluster. We scanned the Shapley supercluster to search for large scale diffuse emission with the Rossi X-ray Timing Explorer (RXTE), and found some evidence for such emission. Large scale diffuse emission may be associated to the supercluster, or the clusters of galaxies within the supercluster. In this paper we present results of scans near Abell 3571. We found that the sum of a cooling flow and an isothermal beta model adequately describes the X-ray emission from the cluster. Our results suggest that diffuse emission from A3571 extends out to about two virial radii. We briefly discuss the importance of the determination of the cut off radius of the beta model.

  8. Large Scale Deformation of the Western US Cordillera

    NASA Technical Reports Server (NTRS)

    Bennett, Richard A.

    2001-01-01

    Destructive earthquakes occur throughout the western US Cordillera (WUSC), not just within the San Andreas fault zone. But because we do not understand the present-day large-scale deformations of the crust throughout the WUSC, our ability to assess the potential for seismic hazards in this region remains severely limited. To address this problem, we are using a large collection of Global Positioning System (GPS) networks which spans the WUSC to precisely quantify present-day large-scale crustal deformations in a single uniform reference frame. Our work can roughly be divided into an analysis of the GPS observations to infer the deformation field across and within the entire plate boundary zone and an investigation of the implications of this deformation field regarding plate boundary dynamics.

  9. Large scale meteorological influence during the Geysers 1979 field experiment

    SciTech Connect

    Barr, S.

    1980-01-01

    A series of meteorological field measurements conducted during July 1979 near Cobb Mountain in Northern California reveals evidence of several scales of atmospheric circulation consistent with the climatic pattern of the area. The scales of influence are reflected in the structure of wind and temperature in vertically stratified layers at a given observation site. Large scale synoptic gradient flow dominates the wind field above about twice the height of the topographic ridge. Below that there is a mixture of effects with evidence of a diurnal sea breeze influence and a sublayer of katabatic winds. The July observations demonstrate that weak migratory circulations in the large scale synoptic meteorological pattern have a significant influence on the day-to-day gradient winds and must be accounted for in planning meteorological programs including tracer experiments.

  10. Large-scale quantum effects in biological systems

    NASA Astrophysics Data System (ADS)

    Mesquita, Marcus V.; Vasconcellos, Áurea R.; Luzzi, Roberto; Mascarenhas, Sergio

    Particular aspects of large-scale quantum effects in biological systems, such as biopolymers and also microtubules in the cytoskeleton of neurons which can have relevance in brain functioning, are discussed. The microscopic (quantum mechanical) and macroscopic (quantum statistical mechanical) aspects, and the emergence of complex behavior, are described. This phenomena consists of the large-scale coherent process of Fröhlich-Bose-Einstein condensation in open and sufficiently far-from-equilibrium biopolymers. Associated with this phenomenon is the presence of Schrödinger-Davydov solitons, which propagate, undistorted and undamped, when embedded in the Fröhlich-Bose-Einstein condensate, thus allowing for the transmission of signals at long distances, involving a question relevant to bioenergetics.

  11. GAIA: A WINDOW TO LARGE-SCALE MOTIONS

    SciTech Connect

    Nusser, Adi; Branchini, Enzo; Davis, Marc E-mail: branchin@fis.uniroma3.it

    2012-08-10

    Using redshifts as a proxy for galaxy distances, estimates of the two-dimensional (2D) transverse peculiar velocities of distant galaxies could be obtained from future measurements of proper motions. We provide the mathematical framework for analyzing 2D transverse motions and show that they offer several advantages over traditional probes of large-scale motions. They are completely independent of any intrinsic relations between galaxy properties; hence, they are essentially free of selection biases. They are free from homogeneous and inhomogeneous Malmquist biases that typically plague distance indicator catalogs. They provide additional information to traditional probes that yield line-of-sight peculiar velocities only. Further, because of their 2D nature, fundamental questions regarding vorticity of large-scale flows can be addressed. Gaia, for example, is expected to provide proper motions of at least bright galaxies with high central surface brightness, making proper motions a likely contender for traditional probes based on current and future distance indicator measurements.

  12. Large-scale objective phenotyping of 3D facial morphology

    PubMed Central

    Hammond, Peter; Suttie, Michael

    2012-01-01

    Abnormal phenotypes have played significant roles in the discovery of gene function, but organized collection of phenotype data has been overshadowed by developments in sequencing technology. In order to study phenotypes systematically, large-scale projects with standardized objective assessment across populations are considered necessary. The report of the 2006 Human Variome Project meeting recommended documentation of phenotypes through electronic means by collaborative groups of computational scientists and clinicians using standard, structured descriptions of disease-specific phenotypes. In this report, we describe progress over the past decade in 3D digital imaging and shape analysis of the face, and future prospects for large-scale facial phenotyping. Illustrative examples are given throughout using a collection of 1107 3D face images of healthy controls and individuals with a range of genetic conditions involving facial dysmorphism. PMID:22434506

  13. Electron drift in a large scale solid xenon

    SciTech Connect

    Yoo, J.; Jaskierny, W. F.

    2015-08-21

    A study of charge drift in a large scale optically transparent solid xenon is reported. A pulsed high power xenon light source is used to liberate electrons from a photocathode. The drift speeds of the electrons are measured using a 8.7 cm long electrode in both the liquid and solid phase of xenon. In the liquid phase (163 K), the drift speed is 0.193 ± 0.003 cm/μs while the drift speed in the solid phase (157 K) is 0.397 ± 0.006 cm/μs at 900 V/cm over 8.0 cm of uniform electric fields. Furthermore, it is demonstrated that a factor two faster electron drift speed in solid phase xenon compared to that in liquid in a large scale solid xenon.

  14. Electron drift in a large scale solid xenon

    DOE PAGESBeta

    Yoo, J.; Jaskierny, W. F.

    2015-08-21

    A study of charge drift in a large scale optically transparent solid xenon is reported. A pulsed high power xenon light source is used to liberate electrons from a photocathode. The drift speeds of the electrons are measured using a 8.7 cm long electrode in both the liquid and solid phase of xenon. In the liquid phase (163 K), the drift speed is 0.193 ± 0.003 cm/μs while the drift speed in the solid phase (157 K) is 0.397 ± 0.006 cm/μs at 900 V/cm over 8.0 cm of uniform electric fields. Furthermore, it is demonstrated that a factor twomore » faster electron drift speed in solid phase xenon compared to that in liquid in a large scale solid xenon.« less

  15. Large-scale micropropagation system of plant cells.

    PubMed

    Honda, Hiroyuki; Kobayashi, Takeshi

    2004-01-01

    Plant micropropagation is an efficient method of propagating disease-free, genetically uniform and massive amounts of plants in vitro. The scale-up of the whole process for plant micropropagation should be established by an economically feasible technology for large-scale production of them in appropriate bioreactors. It is necessary to design suitable bioreactor configuration which can provide adequate mixing and mass transfer while minimizing the intensity of shear stress and hydrodynamic pressure. Automatic selection of embryogenic calli and regenerated plantlets using image analysis system should be associated with the system. The aim of this chapter is to identify the problems related to large-scale plant micropropagation via somatic embryogenesis, and to summarize the micropropagation technology and computer-aided image analysis. Viscous additive supplemented culture, which is including the successful results obtained by us for callus regeneration, is also introduced. PMID:15453194

  16. Individual skill differences and large-scale environmental learning.

    PubMed

    Fields, Alexa W; Shelton, Amy L

    2006-05-01

    Spatial skills are known to vary widely among normal individuals. This project was designed to address whether these individual differences are differentially related to large-scale environmental learning from route (ground-level) and survey (aerial) perspectives. Participants learned two virtual environments (route and survey) with limited exposure and tested on judgments about relative locations of objects. They also performed a series of spatial and nonspatial component skill tests. With limited learning, performance after route encoding was worse than performance after survey encoding. Furthermore, performance after route and survey encoding appeared to be preferentially linked to perspective and object-based transformations, respectively. Together, the results provide clues to how different skills might be engaged by different individuals for the same goal of learning a large-scale environment. PMID:16719662

  17. Quantum Noise in Large-Scale Coherent Nonlinear Photonic Circuits

    NASA Astrophysics Data System (ADS)

    Santori, Charles; Pelc, Jason S.; Beausoleil, Raymond G.; Tezak, Nikolas; Hamerly, Ryan; Mabuchi, Hideo

    2014-06-01

    A semiclassical simulation approach is presented for studying quantum noise in large-scale photonic circuits incorporating an ideal Kerr nonlinearity. A circuit solver is used to generate matrices defining a set of stochastic differential equations, in which the resonator field variables represent random samplings of the Wigner quasiprobability distributions. Although the semiclassical approach involves making a large-photon-number approximation, tests on one- and two-resonator circuits indicate satisfactory agreement between the semiclassical and full-quantum simulation results in the parameter regime of interest. The semiclassical model is used to simulate random errors in a large-scale circuit that contains 88 resonators and hundreds of components in total and functions as a four-bit ripple counter. The error rate as a function of on-state photon number is examined, and it is observed that the quantum fluctuation amplitudes do not increase as signals propagate through the circuit, an important property for scalability.

  18. Large-scale flow generation in turbulent convection

    PubMed Central

    Krishnamurti, Ruby; Howard, Louis N.

    1981-01-01

    In a horizontal layer of fluid heated from below and cooled from above, cellular convection with horizontal length scale comparable to the layer depth occurs for small enough values of the Rayleigh number. As the Rayleigh number is increased, cellular flow disappears and is replaced by a random array of transient plumes. Upon further increase, these plumes drift in one direction near the bottom and in the opposite direction near the top of the layer with the axes of plumes tilted in such a way that horizontal momentum is transported upward via the Reynolds stress. With the onset of this large-scale flow, the largest scale of motion has increased from that comparable to the layer depth to a scale comparable to the layer width. The conditions for occurrence and determination of the direction of this large-scale circulation are described. Images PMID:16592996

  19. Large-scale behavior and statistical equilibria in rotating flows

    NASA Astrophysics Data System (ADS)

    Mininni, P. D.; Dmitruk, P.; Matthaeus, W. H.; Pouquet, A.

    2011-01-01

    We examine long-time properties of the ideal dynamics of three-dimensional flows, in the presence or not of an imposed solid-body rotation and with or without helicity (velocity-vorticity correlation). In all cases, the results agree with the isotropic predictions stemming from statistical mechanics. No accumulation of excitation occurs in the large scales, although, in the dissipative rotating case, anisotropy and accumulation, in the form of an inverse cascade of energy, are known to occur. We attribute this latter discrepancy to the linearity of the term responsible for the emergence of inertial waves. At intermediate times, inertial energy spectra emerge that differ somewhat from classical wave-turbulence expectations and with a trace of large-scale excitation that goes away for long times. These results are discussed in the context of partial two dimensionalization of the flow undergoing strong rotation as advocated by several authors.

  20. Prototype Vector Machine for Large Scale Semi-Supervised Learning

    SciTech Connect

    Zhang, Kai; Kwok, James T.; Parvin, Bahram

    2009-04-29

    Practicaldataminingrarelyfalls exactlyinto the supervisedlearning scenario. Rather, the growing amount of unlabeled data poses a big challenge to large-scale semi-supervised learning (SSL). We note that the computationalintensivenessofgraph-based SSLarises largely from the manifold or graph regularization, which in turn lead to large models that are dificult to handle. To alleviate this, we proposed the prototype vector machine (PVM), a highlyscalable,graph-based algorithm for large-scale SSL. Our key innovation is the use of"prototypes vectors" for effcient approximation on both the graph-based regularizer and model representation. The choice of prototypes are grounded upon two important criteria: they not only perform effective low-rank approximation of the kernel matrix, but also span a model suffering the minimum information loss compared with the complete model. We demonstrate encouraging performance and appealing scaling properties of the PVM on a number of machine learning benchmark data sets.

  1. Large-Scale Optimization for Bayesian Inference in Complex Systems

    SciTech Connect

    Willcox, Karen; Marzouk, Youssef

    2013-11-12

    The SAGUARO (Scalable Algorithms for Groundwater Uncertainty Analysis and Robust Optimization) Project focused on the development of scalable numerical algorithms for large-scale Bayesian inversion in complex systems that capitalize on advances in large-scale simulation-based optimization and inversion methods. The project was a collaborative effort among MIT, the University of Texas at Austin, Georgia Institute of Technology, and Sandia National Laboratories. The research was directed in three complementary areas: efficient approximations of the Hessian operator, reductions in complexity of forward simulations via stochastic spectral approximations and model reduction, and employing large-scale optimization concepts to accelerate sampling. The MIT--Sandia component of the SAGUARO Project addressed the intractability of conventional sampling methods for large-scale statistical inverse problems by devising reduced-order models that are faithful to the full-order model over a wide range of parameter values; sampling then employs the reduced model rather than the full model, resulting in very large computational savings. Results indicate little effect on the computed posterior distribution. On the other hand, in the Texas--Georgia Tech component of the project, we retain the full-order model, but exploit inverse problem structure (adjoint-based gradients and partial Hessian information of the parameter-to-observation map) to implicitly extract lower dimensional information on the posterior distribution; this greatly speeds up sampling methods, so that fewer sampling points are needed. We can think of these two approaches as ``reduce then sample'' and ``sample then reduce.'' In fact, these two approaches are complementary, and can be used in conjunction with each other. Moreover, they both exploit deterministic inverse problem structure, in the form of adjoint-based gradient and Hessian information of the underlying parameter-to-observation map, to achieve their

  2. Analysis plan for 1985 large-scale tests. Technical report

    SciTech Connect

    McMullan, F.W.

    1983-01-01

    The purpose of this effort is to assist DNA in planning for large-scale (upwards of 5000 tons) detonations of conventional explosives in the 1985 and beyond time frame. Primary research objectives were to investigate potential means to increase blast duration and peak pressures. This report identifies and analyzes several candidate explosives. It examines several charge designs and identifies advantages and disadvantages of each. Other factors including terrain and multiburst techniques are addressed as are test site considerations.

  3. Large-scale Alfvén vortices

    NASA Astrophysics Data System (ADS)

    Onishchenko, O. G.; Pokhotelov, O. A.; Horton, W.; Scullion, E.; Fedun, V.

    2015-12-01

    The new type of large-scale vortex structures of dispersionless Alfvén waves in collisionless plasma is investigated. It is shown that Alfvén waves can propagate in the form of Alfvén vortices of finite characteristic radius and characterised by magnetic flux ropes carrying orbital angular momentum. The structure of the toroidal and radial velocity, fluid and magnetic field vorticity, the longitudinal electric current in the plane orthogonal to the external magnetic field are discussed.

  4. Large-Scale Weather Disturbances in Mars’ Southern Extratropics

    NASA Astrophysics Data System (ADS)

    Hollingsworth, Jeffery L.; Kahre, Melinda A.

    2015-11-01

    Between late autumn and early spring, Mars’ middle and high latitudes within its atmosphere support strong mean thermal gradients between the tropics and poles. Observations from both the Mars Global Surveyor (MGS) and Mars Reconnaissance Orbiter (MRO) indicate that this strong baroclinicity supports intense, large-scale eastward traveling weather systems (i.e., transient synoptic-period waves). These extratropical weather disturbances are key components of the global circulation. Such wave-like disturbances act as agents in the transport of heat and momentum, and generalized scalar/tracer quantities (e.g., atmospheric dust, water-vapor and ice clouds). The character of large-scale, traveling extratropical synoptic-period disturbances in Mars' southern hemisphere during late winter through early spring is investigated using a moderately high-resolution Mars global climate model (Mars GCM). This Mars GCM imposes interactively lifted and radiatively active dust based on a threshold value of the surface stress. The model exhibits a reasonable "dust cycle" (i.e., globally averaged, a dustier atmosphere during southern spring and summer occurs). Compared to their northern-hemisphere counterparts, southern synoptic-period weather disturbances and accompanying frontal waves have smaller meridional and zonal scales, and are far less intense. Influences of the zonally asymmetric (i.e., east-west varying) topography on southern large-scale weather are examined. Simulations that adapt Mars’ full topography compared to simulations that utilize synthetic topographies emulating key large-scale features of the southern middle latitudes indicate that Mars’ transient barotropic/baroclinic eddies are highly influenced by the great impact basins of this hemisphere (e.g., Argyre and Hellas). The occurrence of a southern storm zone in late winter and early spring appears to be anchored to the western hemisphere via orographic influences from the Tharsis highlands, and the Argyre

  5. The Phoenix series large scale LNG pool fire experiments.

    SciTech Connect

    Simpson, Richard B.; Jensen, Richard Pearson; Demosthenous, Byron; Luketa, Anay Josephine; Ricks, Allen Joseph; Hightower, Marion Michael; Blanchat, Thomas K.; Helmick, Paul H.; Tieszen, Sheldon Robert; Deola, Regina Anne; Mercier, Jeffrey Alan; Suo-Anttila, Jill Marie; Miller, Timothy J.

    2010-12-01

    The increasing demand for natural gas could increase the number and frequency of Liquefied Natural Gas (LNG) tanker deliveries to ports across the United States. Because of the increasing number of shipments and the number of possible new facilities, concerns about the potential safety of the public and property from an accidental, and even more importantly intentional spills, have increased. While improvements have been made over the past decade in assessing hazards from LNG spills, the existing experimental data is much smaller in size and scale than many postulated large accidental and intentional spills. Since the physics and hazards from a fire change with fire size, there are concerns about the adequacy of current hazard prediction techniques for large LNG spills and fires. To address these concerns, Congress funded the Department of Energy (DOE) in 2008 to conduct a series of laboratory and large-scale LNG pool fire experiments at Sandia National Laboratories (Sandia) in Albuquerque, New Mexico. This report presents the test data and results of both sets of fire experiments. A series of five reduced-scale (gas burner) tests (yielding 27 sets of data) were conducted in 2007 and 2008 at Sandia's Thermal Test Complex (TTC) to assess flame height to fire diameter ratios as a function of nondimensional heat release rates for extrapolation to large-scale LNG fires. The large-scale LNG pool fire experiments were conducted in a 120 m diameter pond specially designed and constructed in Sandia's Area III large-scale test complex. Two fire tests of LNG spills of 21 and 81 m in diameter were conducted in 2009 to improve the understanding of flame height, smoke production, and burn rate and therefore the physics and hazards of large LNG spills and fires.

  6. Cosmic string and formation of large scale structure.

    NASA Astrophysics Data System (ADS)

    Fang, L.-Z.; Xiang, S.-P.

    Cosmic string formed due to phase transition in the early universe may be the cause of galaxy formation and clustering. The advantage of string model is that it can give a consistent explanation of all observed results related to large scale structure, such as correlation functions of galaxies, clusters and superclusters, the existence of voids and/or bubbles, anisotropy of cosmic background radiation. A systematic review on string model has been done.

  7. Large-scale Alfvén vortices

    SciTech Connect

    Onishchenko, O. G.; Horton, W.; Scullion, E.; Fedun, V.

    2015-12-15

    The new type of large-scale vortex structures of dispersionless Alfvén waves in collisionless plasma is investigated. It is shown that Alfvén waves can propagate in the form of Alfvén vortices of finite characteristic radius and characterised by magnetic flux ropes carrying orbital angular momentum. The structure of the toroidal and radial velocity, fluid and magnetic field vorticity, the longitudinal electric current in the plane orthogonal to the external magnetic field are discussed.

  8. Climate: large-scale warming is not urban.

    PubMed

    Parker, David E

    2004-11-18

    Controversy has persisted over the influence of urban warming on reported large-scale surface-air temperature trends. Urban heat islands occur mainly at night and are reduced in windy conditions. Here we show that, globally, temperatures over land have risen as much on windy nights as on calm nights, indicating that the observed overall warming is not a consequence of urban development. PMID:15549087

  9. Relic vector field and CMB large scale anomalies

    SciTech Connect

    Chen, Xingang; Wang, Yi E-mail: yw366@cam.ac.uk

    2014-10-01

    We study the most general effects of relic vector fields on the inflationary background and density perturbations. Such effects are observable if the number of inflationary e-folds is close to the minimum requirement to solve the horizon problem. We show that this can potentially explain two CMB large scale anomalies: the quadrupole-octopole alignment and the quadrupole power suppression. We discuss its effect on the parity anomaly. We also provide analytical template for more detailed data comparison.

  10. Turbulent large-scale structure effects on wake meandering

    NASA Astrophysics Data System (ADS)

    Muller, Y.-A.; Masson, C.; Aubrun, S.

    2015-06-01

    This work studies effects of large-scale turbulent structures on wake meandering using Large Eddy Simulations (LES) over an actuator disk. Other potential source of wake meandering such as the instablility mechanisms associated with tip vortices are not treated in this study. A crucial element of the efficient, pragmatic and successful simulations of large-scale turbulent structures in Atmospheric Boundary Layer (ABL) is the generation of the stochastic turbulent atmospheric flow. This is an essential capability since one source of wake meandering is these large - larger than the turbine diameter - turbulent structures. The unsteady wind turbine wake in ABL is simulated using a combination of LES and actuator disk approaches. In order to dedicate the large majority of the available computing power in the wake, the ABL ground region of the flow is not part of the computational domain. Instead, mixed Dirichlet/Neumann boundary conditions are applied at all the computational surfaces except at the outlet. Prescribed values for Dirichlet contribution of these boundary conditions are provided by a stochastic turbulent wind generator. This allows to simulate large-scale turbulent structures - larger than the computational domain - leading to an efficient simulation technique of wake meandering. Since the stochastic wind generator includes shear, the turbulence production is included in the analysis without the necessity of resolving the flow near the ground. The classical Smagorinsky sub-grid model is used. The resulting numerical methodology has been implemented in OpenFOAM. Comparisons with experimental measurements in porous-disk wakes have been undertaken, and the agreements are good. While temporal resolution in experimental measurements is high, the spatial resolution is often too low. LES numerical results provide a more complete spatial description of the flow. They tend to demonstrate that inflow low frequency content - or large- scale turbulent structures - is

  11. Space transportation booster engine thrust chamber technology, large scale injector

    NASA Technical Reports Server (NTRS)

    Schneider, J. A.

    1993-01-01

    The objective of the Large Scale Injector (LSI) program was to deliver a 21 inch diameter, 600,000 lbf thrust class injector to NASA/MSFC for hot fire testing. The hot fire test program would demonstrate the feasibility and integrity of the full scale injector, including combustion stability, chamber wall compatibility (thermal management), and injector performance. The 21 inch diameter injector was delivered in September of 1991.

  12. Supporting large scale applications on networks of workstations

    NASA Technical Reports Server (NTRS)

    Cooper, Robert; Birman, Kenneth P.

    1989-01-01

    Distributed applications on networks of workstations are an increasingly common way to satisfy computing needs. However, existing mechanisms for distributed programming exhibit poor performance and reliability as application size increases. Extension of the ISIS distributed programming system to support large scale distributed applications by providing hierarchical process groups is discussed. Incorporation of hierarchy in the program structure and exploitation of this to limit the communication and storage required in any one component of the distributed system is examined.

  13. A screen of chemical modifications identifies position-specific modification by UNA to most potently reduce siRNA off-target effects

    PubMed Central

    Bramsen, Jesper B.; Pakula, Malgorzata M.; Hansen, Thomas B.; Bus, Claus; Langkjær, Niels; Odadzic, Dalibor; Smicius, Romualdas; Wengel, Suzy L.; Chattopadhyaya, Jyoti; Engels, Joachim W.; Herdewijn, Piet; Wengel, Jesper; Kjems, Jørgen

    2010-01-01

    Small interfering RNAs (siRNAs) are now established as the preferred tool to inhibit gene function in mammalian cells yet trigger unintended gene silencing due to their inherent miRNA-like behavior. Such off-target effects are primarily mediated by the sequence-specific interaction between the siRNA seed regions (position 2–8 of either siRNA strand counting from the 5′-end) and complementary sequences in the 3′UTR of (off-) targets. It was previously shown that chemical modification of siRNAs can reduce off-targeting but only very few modifications have been tested leaving more to be identified. Here we developed a luciferase reporter-based assay suitable to monitor siRNA off-targeting in a high throughput manner using stable cell lines. We investigated the impact of chemically modifying single nucleotide positions within the siRNA seed on siRNA function and off-targeting using 10 different types of chemical modifications, three different target sequences and three siRNA concentrations. We found several differently modified siRNAs to exercise reduced off-targeting yet incorporation of the strongly destabilizing unlocked nucleic acid (UNA) modification into position 7 of the siRNA most potently reduced off-targeting for all tested sequences. Notably, such position-specific destabilization of siRNA–target interactions did not significantly reduce siRNA potency and is therefore well suited for future siRNA designs especially for applications in vivo where siRNA concentrations, expectedly, will be low. PMID:20453030

  14. Ultrastructural demonstration of chemical modification of melanogenesis in hairless mouse skin

    SciTech Connect

    Nishimura, M.; Gellin, G.A.; Hoshino, S.; Epstein, J.H.; Epstein, W.L.; Fukuyama, K.

    1982-02-01

    We investigated chemical and physical modifications of the genetically determined ultrastructure of melanosomes. The flank skin of hairless mice was treated with ultraviolet energy (UV) shorter than 320 nm or with a combination of a photosensitizer and UV (PUVA treatment). All melanosomes in the induced melanocytes and those in resident melanocytes in the ear skin showed eumelanogenesis, although the degree of melanin deposition differed considerably according to the induction process. Eumelanogenesis was most advanced in the resident melanocytes while PUVA-induced melanocytes showed more immature premelanosomes. We then topically applied 4-tertiary butyl catechol on the skin. The depigmenting agent caused an appearance of pheomelanosomes. The alteration in melanogenesis was seen most distinctly in premelanosomes of the PUVA-induced cells. Altered ultrastructure was also observed in matured melanosomes; this change was most apparent in the resident melanocytes. These findings indicate that cells with eumelanogenesis may undergo pheomelanogenesis. The present study demonstrated effects of chemicals on genetically determined function of melanocytes by quantitative analysis of melanosome ultrastructure.

  15. Polymer Thin Films and Surface Modification by Chemical Vapor Deposition: Recent Progress.

    PubMed

    Chen, Nan; Kim, Do Han; Kovacik, Peter; Sojoudi, Hossein; Wang, Minghui; Gleason, Karen K

    2016-06-01

    Chemical vapor deposition (CVD) polymerization uses vapor phase monomeric reactants to synthesize organic thin films directly on substrates. These thin films are desirable as conformal surface engineering materials and functional layers. The facile tunability of the films and their surface properties allow successful integration of CVD thin films into prototypes for applications in surface modification, device fabrication, and protective films. CVD polymers also bridge microfabrication technology with chemical and biological systems. Robust coatings can be achieved via CVD methods as antifouling, anti-icing, and antihydrate surfaces, as well as stimuli-responsive or biocompatible polymers and novel nanostructures. Use of low-energy input, modest vacuum, and room-temperature substrates renders CVD polymerization compatible with thermally sensitive substrates and devices. Compared with solution-based methods, CVD is particularly useful for insoluble materials, such as electrically conductive polymers and controllably crosslinked networks, and has the potential to reduce environmental, health, and safety impacts associated with solvents. This review discusses the relevant background and selected applications of recent advances by two methods that display and use the high retention of the organic functional groups from their respective monomers, initiated CVD (iCVD) and oxidative CVD (oCVD) polymerization. PMID:27276550

  16. Characterization of a multi-metal binding biosorbent: Chemical modification and desorption studies.

    PubMed

    Abdolali, Atefeh; Ngo, Huu Hao; Guo, Wenshan; Zhou, John L; Du, Bin; Wei, Qin; Wang, Xiaochang C; Nguyen, Phuoc Dan

    2015-10-01

    This work attends to preparation and characterization of a novel multi-metal binding biosorbent after chemical modification and desorption studies. Biomass is a combination of tea waste, maple leaves and mandarin peels with a certain proportion to adsorb cadmium, copper, lead and zinc ions from aqueous solutions. The mechanism involved in metal removal was investigated by SEM, SEM/EDS and FTIR. SEM/EDS showed the presence of different chemicals and adsorbed heavy metal ions on the surface of biosorbent. FTIR of both unmodified and modified biosorbents revealed the important role of carboxylate groups in heavy metal biosorption. Desorption using different eluents and 0.1 M HCl showed the best desorption performance. The effectiveness of regeneration step by 1 M CaCl2 on five successive cycles of sorption and desorption displays this multi-metal binding biosorbent (MMBB) can effectively be utilized as an adsorbent to remove heavy metal ions from aqueous solutions in five cycles of sorption/desorption/regeneration. PMID:26162526

  17. Chemical surface modification of poly-ε-caprolactone improves Schwann cell proliferation for peripheral nerve repair.

    PubMed

    de Luca, Alba C; Terenghi, Giorgio; Downes, Sandra

    2014-02-01

    Poly-ε-caprolactone (PCL) is a biodegradable and biocompatible polymer used in tissue engineering for various clinical applications. Schwann cells (SCs) play an important role in nerve regeneration and repair. SCs attach and proliferate on PCL films but cellular responses are weak due to the hydrophobicity and neutrality of PCL. In this study, PCL films were hydrolysed and aminolysed to modify the surface with different functional groups and improve hydrophilicity. Hydrolysed films showed a significant increase in hydrophilicity while maintaining surface topography. A significant decrease in mechanical properties was also observed in the case of aminolysis. In vitro tests with Schwann cells (SCs) were performed to assess film biocompatibility. A short-time experiment showed improved cell attachment on modified films, in particular when amino groups were present on the material surface. Cell proliferation significantly increased when both treatments were performed, indicating that surface treatments are necessary for SC response. It was also demonstrated that cell morphology was influenced by physico-chemical surface properties. PCL can be used to make artificial conduits and chemical modification of the inner lumen improves biocompatibility. PMID:22508573

  18. Evaluation of electrode surface modification techniques for the development of chemical sensors

    SciTech Connect

    Galiatsatos, C.

    1988-01-01

    This thesis covers several aspects of electrode surface modification techniques. The successful application of gamma-radiation to create polymer-coated electrodes, where the polymers can be ion exchangers and consequently of great analytical interest by themselves (such as the polymer poly(diallyl) dimethyl ammonium chloride) or where some other neutral polymers can function as convenient matrices for the introduction of biomolecules and/or other electrochemically interesting species is reported. This is demonstrated by using the neutral polymer poly(vinyl alcohol) (PVAL) as a matrix for immobilization of the enzyme glucose oxidase and the mediator methyl viologen. The effect of {gamma}-radiation on PVAL is discussed, as well as swelling properties of the irradiated polymers and specific characteristics of the created chemical sensors. Results of an experiment where the various kinds of interactions between the ion-exchange polymer Nafion and some positively charged species are explored are reported, and a model system for competition (methyl viologen vs. ruthenium hexaamine) which increases significantly our understanding of the interaction is mentioned. The effect of {gamma}-radiation on Nafion and its ion-exchange compabilities is discussed also. A system of conduction polymers primarily polypyrrole, used as a detector of electroinactive anions due to their doping-undergoing in the film is discussed. Preliminary results on a new method that involves chemical cross-linking of a triisocyane molecule with -OH containing polymers in the presence of enzymes are reported.

  19. Homogenization of Large-Scale Movement Models in Ecology

    USGS Publications Warehouse

    Garlick, M.J.; Powell, J.A.; Hooten, M.B.; McFarlane, L.R.

    2011-01-01

    A difficulty in using diffusion models to predict large scale animal population dispersal is that individuals move differently based on local information (as opposed to gradients) in differing habitat types. This can be accommodated by using ecological diffusion. However, real environments are often spatially complex, limiting application of a direct approach. Homogenization for partial differential equations has long been applied to Fickian diffusion (in which average individual movement is organized along gradients of habitat and population density). We derive a homogenization procedure for ecological diffusion and apply it to a simple model for chronic wasting disease in mule deer. Homogenization allows us to determine the impact of small scale (10-100 m) habitat variability on large scale (10-100 km) movement. The procedure generates asymptotic equations for solutions on the large scale with parameters defined by small-scale variation. The simplicity of this homogenization procedure is striking when compared to the multi-dimensional homogenization procedure for Fickian diffusion,and the method will be equally straightforward for more complex models. ?? 2010 Society for Mathematical Biology.

  20. Dispersal Mutualism Incorporated into Large-Scale, Infrequent Disturbances

    PubMed Central

    Parker, V. Thomas

    2015-01-01

    Because of their influence on succession and other community interactions, large-scale, infrequent natural disturbances also should play a major role in mutualistic interactions. Using field data and experiments, I test whether mutualisms have been incorporated into large-scale wildfire by whether the outcomes of a mutualism depend on disturbance. In this study a seed dispersal mutualism is shown to depend on infrequent, large-scale disturbances. A dominant shrubland plant (Arctostaphylos species) produces seeds that make up a persistent soil seed bank and requires fire to germinate. In post-fire stands, I show that seedlings emerging from rodent caches dominate sites experiencing higher fire intensity. Field experiments show that rodents (Perimyscus californicus, P. boylii) do cache Arctostaphylos fruit and bury most seed caches to a sufficient depth to survive a killing heat pulse that a fire might drive into the soil. While the rodent dispersal and caching behavior itself has not changed compared to other habitats, the environmental transformation caused by wildfire converts the caching burial of seed from a dispersal process to a plant fire adaptive trait, and provides the context for stimulating subsequent life history evolution in the plant host. PMID:26151560

  1. Reliability assessment for components of large scale photovoltaic systems

    NASA Astrophysics Data System (ADS)

    Ahadi, Amir; Ghadimi, Noradin; Mirabbasi, Davar

    2014-10-01

    Photovoltaic (PV) systems have significantly shifted from independent power generation systems to a large-scale grid-connected generation systems in recent years. The power output of PV systems is affected by the reliability of various components in the system. This study proposes an analytical approach to evaluate the reliability of large-scale, grid-connected PV systems. The fault tree method with an exponential probability distribution function is used to analyze the components of large-scale PV systems. The system is considered in the various sequential and parallel fault combinations in order to find all realistic ways in which the top or undesired events can occur. Additionally, it can identify areas that the planned maintenance should focus on. By monitoring the critical components of a PV system, it is possible not only to improve the reliability of the system, but also to optimize the maintenance costs. The latter is achieved by informing the operators about the system component's status. This approach can be used to ensure secure operation of the system by its flexibility in monitoring system applications. The implementation demonstrates that the proposed method is effective and efficient and can conveniently incorporate more system maintenance plans and diagnostic strategies.

  2. Robust regression for large-scale neuroimaging studies.

    PubMed

    Fritsch, Virgile; Da Mota, Benoit; Loth, Eva; Varoquaux, Gaël; Banaschewski, Tobias; Barker, Gareth J; Bokde, Arun L W; Brühl, Rüdiger; Butzek, Brigitte; Conrod, Patricia; Flor, Herta; Garavan, Hugh; Lemaitre, Hervé; Mann, Karl; Nees, Frauke; Paus, Tomas; Schad, Daniel J; Schümann, Gunter; Frouin, Vincent; Poline, Jean-Baptiste; Thirion, Bertrand

    2015-05-01

    Multi-subject datasets used in neuroimaging group studies have a complex structure, as they exhibit non-stationary statistical properties across regions and display various artifacts. While studies with small sample sizes can rarely be shown to deviate from standard hypotheses (such as the normality of the residuals) due to the poor sensitivity of normality tests with low degrees of freedom, large-scale studies (e.g. >100 subjects) exhibit more obvious deviations from these hypotheses and call for more refined models for statistical inference. Here, we demonstrate the benefits of robust regression as a tool for analyzing large neuroimaging cohorts. First, we use an analytic test based on robust parameter estimates; based on simulations, this procedure is shown to provide an accurate statistical control without resorting to permutations. Second, we show that robust regression yields more detections than standard algorithms using as an example an imaging genetics study with 392 subjects. Third, we show that robust regression can avoid false positives in a large-scale analysis of brain-behavior relationships with over 1500 subjects. Finally we embed robust regression in the Randomized Parcellation Based Inference (RPBI) method and demonstrate that this combination further improves the sensitivity of tests carried out across the whole brain. Altogether, our results show that robust procedures provide important advantages in large-scale neuroimaging group studies. PMID:25731989

  3. Large-scale flow experiments for managing river systems

    USGS Publications Warehouse

    Konrad, C.P.; Olden, J.D.; Lytle, D.A.; Melis, T.S.; Schmidt, J.C.; Bray, E.N.; Freeman, Mary C.; Gido, K.B.; Hemphill, N.P.; Kennard, M.J.; McMullen, L.E.; Mims, M.C.; Pyron, M.; Robinson, C.T.; Williams, J.G.

    2011-01-01

    Experimental manipulations of streamflow have been used globally in recent decades to mitigate the impacts of dam operations on river systems. Rivers are challenging subjects for experimentation, because they are open systems that cannot be isolated from their social context. We identify principles to address the challenges of conducting effective large-scale flow experiments. Flow experiments have both scientific and social value when they help to resolve specific questions about the ecological action of flow with a clear nexus to water policies and decisions. Water managers must integrate new information into operating policies for large-scale experiments to be effective. Modeling and monitoring can be integrated with experiments to analyze long-term ecological responses. Experimental design should include spatially extensive observations and well-defined, repeated treatments. Large-scale flow manipulations are only a part of dam operations that affect river systems. Scientists can ensure that experimental manipulations continue to be a valuable approach for the scientifically based management of river systems. ?? 2011 by American Institute of Biological Sciences. All rights reserved.

  4. Large-scale flow experiments for managing river systems

    USGS Publications Warehouse

    Konrad, Christopher P.; Olden, Julian D.; Lytle, David A.; Melis, Theodore S.; Schmidt, John C.; Bray, Erin N.; Freeman, Mary C.; Gido, Keith B.; Hemphill, Nina P.; Kennard, Mark J.; McMullen, Laura E.; Mims, Meryl C.; Pyron, Mark; Robinson, Christopher T.; Williams, John G.

    2011-01-01

    Experimental manipulations of streamflow have been used globally in recent decades to mitigate the impacts of dam operations on river systems. Rivers are challenging subjects for experimentation, because they are open systems that cannot be isolated from their social context. We identify principles to address the challenges of conducting effective large-scale flow experiments. Flow experiments have both scientific and social value when they help to resolve specific questions about the ecological action of flow with a clear nexus to water policies and decisions. Water managers must integrate new information into operating policies for large-scale experiments to be effective. Modeling and monitoring can be integrated with experiments to analyze long-term ecological responses. Experimental design should include spatially extensive observations and well-defined, repeated treatments. Large-scale flow manipulations are only a part of dam operations that affect river systems. Scientists can ensure that experimental manipulations continue to be a valuable approach for the scientifically based management of river systems.

  5. Large-scale flow generation by inhomogeneous helicity

    NASA Astrophysics Data System (ADS)

    Yokoi, N.; Brandenburg, A.

    2016-03-01

    The effect of kinetic helicity (velocity-vorticity correlation) on turbulent momentum transport is investigated. The turbulent kinetic helicity (pseudoscalar) enters the Reynolds stress (mirror-symmetric tensor) expression in the form of a helicity gradient as the coupling coefficient for the mean vorticity and/or the angular velocity (axial vector), which suggests the possibility of mean-flow generation in the presence of inhomogeneous helicity. This inhomogeneous helicity effect, which was previously confirmed at the level of a turbulence- or closure-model simulation, is examined with the aid of direct numerical simulations of rotating turbulence with nonuniform helicity sustained by an external forcing. The numerical simulations show that the spatial distribution of the Reynolds stress is in agreement with the helicity-related term coupled with the angular velocity, and that a large-scale flow is generated in the direction of angular velocity. Such a large-scale flow is not induced in the case of homogeneous turbulent helicity. This result confirms the validity of the inhomogeneous helicity effect in large-scale flow generation and suggests that a vortex dynamo is possible even in incompressible turbulence where there is no baroclinicity effect.

  6. Dispersal Mutualism Incorporated into Large-Scale, Infrequent Disturbances.

    PubMed

    Parker, V Thomas

    2015-01-01

    Because of their influence on succession and other community interactions, large-scale, infrequent natural disturbances also should play a major role in mutualistic interactions. Using field data and experiments, I test whether mutualisms have been incorporated into large-scale wildfire by whether the outcomes of a mutualism depend on disturbance. In this study a seed dispersal mutualism is shown to depend on infrequent, large-scale disturbances. A dominant shrubland plant (Arctostaphylos species) produces seeds that make up a persistent soil seed bank and requires fire to germinate. In post-fire stands, I show that seedlings emerging from rodent caches dominate sites experiencing higher fire intensity. Field experiments show that rodents (Perimyscus californicus, P. boylii) do cache Arctostaphylos fruit and bury most seed caches to a sufficient depth to survive a killing heat pulse that a fire might drive into the soil. While the rodent dispersal and caching behavior itself has not changed compared to other habitats, the environmental transformation caused by wildfire converts the caching burial of seed from a dispersal process to a plant fire adaptive trait, and provides the context for stimulating subsequent life history evolution in the plant host. PMID:26151560

  7. Photorealistic large-scale urban city model reconstruction.

    PubMed

    Poullis, Charalambos; You, Suya

    2009-01-01

    The rapid and efficient creation of virtual environments has become a crucial part of virtual reality applications. In particular, civil and defense applications often require and employ detailed models of operations areas for training, simulations of different scenarios, planning for natural or man-made events, monitoring, surveillance, games, and films. A realistic representation of the large-scale environments is therefore imperative for the success of such applications since it increases the immersive experience of its users and helps reduce the difference between physical and virtual reality. However, the task of creating such large-scale virtual environments still remains a time-consuming and manual work. In this work, we propose a novel method for the rapid reconstruction of photorealistic large-scale virtual environments. First, a novel, extendible, parameterized geometric primitive is presented for the automatic building identification and reconstruction of building structures. In addition, buildings with complex roofs containing complex linear and nonlinear surfaces are reconstructed interactively using a linear polygonal and a nonlinear primitive, respectively. Second, we present a rendering pipeline for the composition of photorealistic textures, which unlike existing techniques, can recover missing or occluded texture information by integrating multiple information captured from different optical sensors (ground, aerial, and satellite). PMID:19423889

  8. Large scale structure in universes dominated by cold dark matter

    NASA Technical Reports Server (NTRS)

    Bond, J. Richard

    1986-01-01

    The theory of Gaussian random density field peaks is applied to a numerical study of the large-scale structure developing from adiabatic fluctuations in models of biased galaxy formation in universes with Omega = 1, h = 0.5 dominated by cold dark matter (CDM). The angular anisotropy of the cross-correlation function demonstrates that the far-field regions of cluster-scale peaks are asymmetric, as recent observations indicate. These regions will generate pancakes or filaments upon collapse. One-dimensional singularities in the large-scale bulk flow should arise in these CDM models, appearing as pancakes in position space. They are too rare to explain the CfA bubble walls, but pancakes that are just turning around now are sufficiently abundant and would appear to be thin walls normal to the line of sight in redshift space. Large scale streaming velocities are significantly smaller than recent observations indicate. To explain the reported 700 km/s coherent motions, mass must be significantly more clustered than galaxies with a biasing factor of less than 0.4 and a nonlinear redshift at cluster scales greater than one for both massive neutrino and cold models.

  9. Line segment extraction for large scale unorganized point clouds

    NASA Astrophysics Data System (ADS)

    Lin, Yangbin; Wang, Cheng; Cheng, Jun; Chen, Bili; Jia, Fukai; Chen, Zhonggui; Li, Jonathan

    2015-04-01

    Line segment detection in images is already a well-investigated topic, although it has received considerably less attention in 3D point clouds. Benefiting from current LiDAR devices, large-scale point clouds are becoming increasingly common. Most human-made objects have flat surfaces. Line segments that occur where pairs of planes intersect give important information regarding the geometric content of point clouds, which is especially useful for automatic building reconstruction and segmentation. This paper proposes a novel method that is capable of accurately extracting plane intersection line segments from large-scale raw scan points. The 3D line-support region, namely, a point set near a straight linear structure, is extracted simultaneously. The 3D line-support region is fitted by our Line-Segment-Half-Planes (LSHP) structure, which provides a geometric constraint for a line segment, making the line segment more reliable and accurate. We demonstrate our method on the point clouds of large-scale, complex, real-world scenes acquired by LiDAR devices. We also demonstrate the application of 3D line-support regions and their LSHP structures on urban scene abstraction.

  10. Geospatial Optimization of Siting Large-Scale Solar Projects

    SciTech Connect

    Macknick, J.; Quinby, T.; Caulfield, E.; Gerritsen, M.; Diffendorfer, J.; Haines, S.

    2014-03-01

    Recent policy and economic conditions have encouraged a renewed interest in developing large-scale solar projects in the U.S. Southwest. However, siting large-scale solar projects is complex. In addition to the quality of the solar resource, solar developers must take into consideration many environmental, social, and economic factors when evaluating a potential site. This report describes a proof-of-concept, Web-based Geographical Information Systems (GIS) tool that evaluates multiple user-defined criteria in an optimization algorithm to inform discussions and decisions regarding the locations of utility-scale solar projects. Existing siting recommendations for large-scale solar projects from governmental and non-governmental organizations are not consistent with each other, are often not transparent in methods, and do not take into consideration the differing priorities of stakeholders. The siting assistance GIS tool we have developed improves upon the existing siting guidelines by being user-driven, transparent, interactive, capable of incorporating multiple criteria, and flexible. This work provides the foundation for a dynamic siting assistance tool that can greatly facilitate siting decisions among multiple stakeholders.

  11. Large-scale data mining pilot project in human genome

    SciTech Connect

    Musick, R.; Fidelis, R.; Slezak, T.

    1997-05-01

    This whitepaper briefly describes a new, aggressive effort in large- scale data Livermore National Labs. The implications of `large- scale` will be clarified Section. In the short term, this effort will focus on several @ssion-critical questions of Genome project. We will adapt current data mining techniques to the Genome domain, to quantify the accuracy of inference results, and lay the groundwork for a more extensive effort in large-scale data mining. A major aspect of the approach is that we will be fully-staffed data warehousing effort in the human Genome area. The long term goal is strong applications- oriented research program in large-@e data mining. The tools, skill set gained will be directly applicable to a wide spectrum of tasks involving a for large spatial and multidimensional data. This includes applications in ensuring non-proliferation, stockpile stewardship, enabling Global Ecology (Materials Database Industrial Ecology), advancing the Biosciences (Human Genome Project), and supporting data for others (Battlefield Management, Health Care).

  12. How Large Scales Flows May Influence Solar Activity

    NASA Technical Reports Server (NTRS)

    Hathaway, D. H.

    2004-01-01

    Large scale flows within the solar convection zone are the primary drivers of the Sun's magnetic activity cycle and play important roles in shaping the Sun's magnetic field. Differential rotation amplifies the magnetic field through its shearing action and converts poloidal field into toroidal field. Poleward meridional flow near the surface carries magnetic flux that reverses the magnetic poles at about the time of solar maximum. The deeper, equatorward meridional flow can carry magnetic flux back toward the lower latitudes where it erupts through the surface to form tilted active regions that convert toroidal fields into oppositely directed poloidal fields. These axisymmetric flows are themselves driven by large scale convective motions. The effects of the Sun's rotation on convection produce velocity correlations that can maintain both the differential rotation and the meridional circulation. These convective motions can also influence solar activity directly by shaping the magnetic field pattern. While considerable theoretical advances have been made toward understanding these large scale flows, outstanding problems in matching theory to observations still remain.

  13. New Large-scale Control Strategies for Turbulent Boundary Layers

    NASA Astrophysics Data System (ADS)

    Schoppa, Wade; Hussain, Fazle

    1997-11-01

    Using direct numerical simulations of turbulent channel flow, we present robust strategies for drag reduction by prevention of streamwise vortex formation near the wall. Instability of lifted, vortex-free low-speed streaks is shown to generate new streamwise vortices, which dominate near-wall turbulence phenomena. The newly-found instability mechanism initiates streak waviness in the (x,z) plane which leads to ωx sheets. Streak waviness induces positive partial u/partial x (i.e. positive VISA) which causes these sheets to then collapse via stretching (rather than roll up) into streamwise vortices. Significantly, the 3D features of the (instantaneous) instability-generated vortices agree well with the coherent structures educed (i.e. ensemble-averaged) from fully turbulent flow, suggesting the prevalence of this instability mechanism. The new control via large-scale streak manipulation exploits this crucial role of streak instability in vortex generation. An x-independent forcing with a z wavelength of 4 streak spacings, with an amplitude of only 5% of the centerline velocity, produces a significant sustained drag reduction: 20% for imposed counterrotating large-scale swirls and 50% for colliding spanwise wall jet-like forcing. These results suggest promising drag reduction strategies, involving large-scale (hence more durable) actuation and requiring no wall sensors or feedback logic.

  14. Lateral stirring of large-scale tracer fields by altimetry

    NASA Astrophysics Data System (ADS)

    Dencausse, Guillaume; Morrow, Rosemary; Rogé, Marine; Fleury, Sara

    2014-01-01

    Ocean surface fronts and filaments have a strong impact on the global ocean circulation and biogeochemistry. Surface Lagrangian advection with time-evolving altimetric geostrophic velocities can be used to simulate the submesoscale front and filament structures in large-scale tracer fields. We study this technique in the Southern Ocean region south of Tasmania, a domain marked by strong meso- to submesoscale features such as the fronts of the Antarctic Circumpolar Current (ACC). Starting with large-scale surface tracer fields that we stir with altimetric velocities, we determine `advected' fields which compare well with high-resolution in situ or satellite tracer data. We find that fine scales are best represented in a statistical sense after an optimal advection time of ˜2 weeks, with enhanced signatures of the ACC fronts and better spectral energy. The technique works best in moderate to high EKE regions where lateral advection dominates. This technique may be used to infer the distribution of unresolved small scales in any physical or biogeochemical surface tracer that is dominated by lateral advection. Submesoscale dynamics also impact the subsurface of the ocean, and the Lagrangian advection at depth shows promising results. Finally, we show that climatological tracer fields computed from the advected large-scale fields display improved fine-scale mean features, such as the ACC fronts, which can be useful in the context of ocean modelling.

  15. Large scale anisotropy of UHECRs for the Telescope Array

    SciTech Connect

    Kido, E.

    2011-09-22

    The origin of Ultra High Energy Cosmic Rays (UHECRs) is one of the most interesting questions in astroparticle physics. Despite of the efforts by other previous measurements, there is no consensus of both of the origin and the mechanism of UHECRs generation and propagation yet. In this context, Telescope Array (TA) experiment is expected to play an important role as the largest detector in the northern hemisphere which consists of an array of surface particle detectors (SDs) and fluorescence detectors (FDs) and other important calibration devices. We searched for large scale anisotropy using SD data of TA. UHECRs are expected to be restricted in GZK horizon when the composition of UHECRs is proton, so the observed arrival directions are expected to exhibit local large scale anisotropy if UHECR sources are some astrophysical objects. We used the SD data set from 11 May 2008 to 7 September 2010 to search for large-scale anisotropy. The discrimination power between LSS and isotropy is not enough yet, but the statistics in TA is expected to discriminate between those in about 95% confidence level on average in near future.

  16. Large-scale functional connectivity networks in the rodent brain.

    PubMed

    Gozzi, Alessandro; Schwarz, Adam J

    2016-02-15

    Resting-state functional Magnetic Resonance Imaging (rsfMRI) of the human brain has revealed multiple large-scale neural networks within a hierarchical and complex structure of coordinated functional activity. These distributed neuroanatomical systems provide a sensitive window on brain function and its disruption in a variety of neuropathological conditions. The study of macroscale intrinsic connectivity networks in preclinical species, where genetic and environmental conditions can be controlled and manipulated with high specificity, offers the opportunity to elucidate the biological determinants of these alterations. While rsfMRI methods are now widely used in human connectivity research, these approaches have only relatively recently been back-translated into laboratory animals. Here we review recent progress in the study of functional connectivity in rodent species, emphasising the ability of this approach to resolve large-scale brain networks that recapitulate neuroanatomical features of known functional systems in the human brain. These include, but are not limited to, a distributed set of regions identified in rats and mice that may represent a putative evolutionary precursor of the human default mode network (DMN). The impact and control of potential experimental and methodological confounds are also critically discussed. Finally, we highlight the enormous potential and some initial application of connectivity mapping in transgenic models as a tool to investigate the neuropathological underpinnings of the large-scale connectional alterations associated with human neuropsychiatric and neurological conditions. We conclude by discussing the translational potential of these methods in basic and applied neuroscience. PMID:26706448

  17. Multiresolution comparison of precipitation datasets for large-scale models

    NASA Astrophysics Data System (ADS)

    Chun, K. P.; Sapriza Azuri, G.; Davison, B.; DeBeer, C. M.; Wheater, H. S.

    2014-12-01

    Gridded precipitation datasets are crucial for driving large-scale models which are related to weather forecast and climate research. However, the quality of precipitation products is usually validated individually. Comparisons between gridded precipitation products along with ground observations provide another avenue for investigating how the precipitation uncertainty would affect the performance of large-scale models. In this study, using data from a set of precipitation gauges over British Columbia and Alberta, we evaluate several widely used North America gridded products including the Canadian Gridded Precipitation Anomalies (CANGRD), the National Center for Environmental Prediction (NCEP) reanalysis, the Water and Global Change (WATCH) project, the thin plate spline smoothing algorithms (ANUSPLIN) and Canadian Precipitation Analysis (CaPA). Based on verification criteria for various temporal and spatial scales, results provide an assessment of possible applications for various precipitation datasets. For long-term climate variation studies (~100 years), CANGRD, NCEP, WATCH and ANUSPLIN have different comparative advantages in terms of their resolution and accuracy. For synoptic and mesoscale precipitation patterns, CaPA provides appealing performance of spatial coherence. In addition to the products comparison, various downscaling methods are also surveyed to explore new verification and bias-reduction methods for improving gridded precipitation outputs for large-scale models.

  18. Upscaling of elastic properties for large scale geomechanical simulations

    NASA Astrophysics Data System (ADS)

    Chalon, F.; Mainguy, M.; Longuemare, P.; Lemonnier, P.

    2004-09-01

    Large scale geomechanical simulations are being increasingly used to model the compaction of stress dependent reservoirs, predict the long term integrity of under-ground radioactive waste disposals, and analyse the viability of hot-dry rock geothermal sites. These large scale simulations require the definition of homogenous mechanical properties for each geomechanical cell whereas the rock properties are expected to vary at a smaller scale. Therefore, this paper proposes a new methodology that makes possible to define the equivalent mechanical properties of the geomechanical cells using the fine scale information given in the geological model. This methodology is implemented on a synthetic reservoir case and two upscaling procedures providing the effective elastic properties of the Hooke's law are tested. The first upscaling procedure is an analytical method for perfectly stratified rock mass, whereas the second procedure computes lower and upper bounds of the equivalent properties with no assumption on the small scale heterogeneity distribution. Both procedures are applied to one geomechanical cell extracted from the reservoir structure. The results show that the analytical and numerical upscaling procedures provide accurate estimations of the effective parameters. Furthermore, a large scale simulation using the homogenized properties of each geomechanical cell calculated with the analytical method demonstrates that the overall behaviour of the reservoir structure is well reproduced for two different loading cases. Copyright

  19. Design and Use of a Large-Scale Liquid Helium Conversion System

    NASA Technical Reports Server (NTRS)

    Knudsen, P. N.

    1999-01-01

    A large-scale liquid helium (LHe) to high-pressure (HP) gas conversion system has been implemented at the John F. Kennedy Space Center (KSC). Helium is used by the Space Shuttle, Titan, Atlas, and Delta programs for prelaunch processing, during launch count-down, and for postlaunch securing. The first phase of modifications to the Compressor Converter Facility (CCF), operational in April 1998, allowed the facility to accept bulk liquid helium from tanker containers and to off-load the helium at super-critical pressures. The second phase of modifications, planned to be operational by January 2001, will implement a 227-cubic-meter (m(sup 3)) on-site liquid helium storage system. This paper describes the design and operation of the current system and discusses the design and implementation for the second phase system.

  20. Impacts of tropical deforestation. Part II: The role of large-scale dynamics

    SciTech Connect

    Zhang, H.; Henderson-Sellers, A.; McGuffie, K.

    1996-10-01

    This is the second in a pair of papers in which the possible impacts of tropical deforestation are examined using a version of the NCAR CCM1. The emphasis in this paper is on the influence of tropical deforestation on the large-scale climate system. This influence is explored through the examination of the regional moisture budget and through an analysis of the Hadley and Walker circulations. Modification of the model surface parameters to simulate tropical deforestation produces significant modifications of both Hadley and Walker circulations, which result in changes distant from the region of deforestation. A mechanism for propagation to middle and high latitudes of disturbances arising form tropical deforestation is proposed based on Rossby wave propagation mechanisms. These mechanisms, which have also been associated with the extratropical influences of ENSO events, provide a pathway for the dispersion of the tropical disturbances to high latitudes. 27 refs., 20 figs., 1 tab.

  1. Simulation of large-scale rule-based models

    SciTech Connect

    Hlavacek, William S; Monnie, Michael I; Colvin, Joshua; Faseder, James

    2008-01-01

    Interactions of molecules, such as signaling proteins, with multiple binding sites and/or multiple sites of post-translational covalent modification can be modeled using reaction rules. Rules comprehensively, but implicitly, define the individual chemical species and reactions that molecular interactions can potentially generate. Although rules can be automatically processed to define a biochemical reaction network, the network implied by a set of rules is often too large to generate completely or to simulate using conventional procedures. To address this problem, we present DYNSTOC, a general-purpose tool for simulating rule-based models. DYNSTOC implements a null-event algorithm for simulating chemical reactions in a homogenous reaction compartment. The simulation method does not require that a reaction network be specified explicitly in advance, but rather takes advantage of the availability of the reaction rules in a rule-based specification of a network to determine if a randomly selected set of molecular components participates in a reaction during a time step. DYNSTOC reads reaction rules written in the BioNetGen language which is useful for modeling protein-protein interactions involved in signal transduction. The method of DYNSTOC is closely related to that of STOCHSIM. DYNSTOC differs from STOCHSIM by allowing for model specification in terms of BNGL, which extends the range of protein complexes that can be considered in a model. DYNSTOC enables the simulation of rule-based models that cannot be simulated by conventional methods. We demonstrate the ability of DYNSTOC to simulate models accounting for multisite phosphorylation and multivalent binding processes that are characterized by large numbers of reactions. DYNSTOC is free for non-commercial use. The C source code, supporting documentation and example input files are available at .

  2. Foundational perspectives on causality in large-scale brain networks.

    PubMed

    Mannino, Michael; Bressler, Steven L

    2015-12-01

    A profusion of recent work in cognitive neuroscience has been concerned with the endeavor to uncover causal influences in large-scale brain networks. However, despite the fact that many papers give a nod to the important theoretical challenges posed by the concept of causality, this explosion of research has generally not been accompanied by a rigorous conceptual analysis of the nature of causality in the brain. This review provides both a descriptive and prescriptive account of the nature of causality as found within and between large-scale brain networks. In short, it seeks to clarify the concept of causality in large-scale brain networks both philosophically and scientifically. This is accomplished by briefly reviewing the rich philosophical history of work on causality, especially focusing on contributions by David Hume, Immanuel Kant, Bertrand Russell, and Christopher Hitchcock. We go on to discuss the impact that various interpretations of modern physics have had on our understanding of causality. Throughout all this, a central focus is the distinction between theories of deterministic causality (DC), whereby causes uniquely determine their effects, and probabilistic causality (PC), whereby causes change the probability of occurrence of their effects. We argue that, given the topological complexity of its large-scale connectivity, the brain should be considered as a complex system and its causal influences treated as probabilistic in nature. We conclude that PC is well suited for explaining causality in the brain for three reasons: (1) brain causality is often mutual; (2) connectional convergence dictates that only rarely is the activity of one neuronal population uniquely determined by another one; and (3) the causal influences exerted between neuronal populations may not have observable effects. A number of different techniques are currently available to characterize causal influence in the brain. Typically, these techniques quantify the statistical

  3. Large-scale magnetic topologies of early M dwarfs

    NASA Astrophysics Data System (ADS)

    Donati, J.-F.; Morin, J.; Petit, P.; Delfosse, X.; Forveille, T.; Aurière, M.; Cabanac, R.; Dintrans, B.; Fares, R.; Gastine, T.; Jardine, M. M.; Lignières, F.; Paletou, F.; Ramirez Velez, J. C.; Théado, S.

    2008-10-01

    We present here additional results of a spectropolarimetric survey of a small sample of stars ranging from spectral type M0 to M8 aimed at investigating observationally how dynamo processes operate in stars on both sides of the full convection threshold (spectral type M4). The present paper focuses on early M stars (M0-M3), that is above the full convection threshold. Applying tomographic imaging techniques to time series of rotationally modulated circularly polarized profiles collected with the NARVAL spectropolarimeter, we determine the rotation period and reconstruct the large-scale magnetic topologies of six early M dwarfs. We find that early-M stars preferentially host large-scale fields with dominantly toroidal and non-axisymmetric poloidal configurations, along with significant differential rotation (and long-term variability); only the lowest-mass star of our subsample is found to host an almost fully poloidal, mainly axisymmetric large-scale field resembling those found in mid-M dwarfs. This abrupt change in the large-scale magnetic topologies of M dwarfs (occurring at spectral type M3) has no related signature on X-ray luminosities (measuring the total amount of magnetic flux); it thus suggests that underlying dynamo processes become more efficient at producing large-scale fields (despite producing the same flux) at spectral types later than M3. We suspect that this change relates to the rapid decrease in the radiative cores of low-mass stars and to the simultaneous sharp increase of the convective turnover times (with decreasing stellar mass) that models predict to occur at M3; it may also be (at least partly) responsible for the reduced magnetic braking reported for fully convective stars. Based on observations obtained at the Télescope Bernard Lyot (TBL), operated by the Institut National des Science de l'Univers of the Centre National de la Recherche Scientifique of France. E-mail: donati@ast.obs-mip.fr (J-FD); jmorin@ast.obs-mip.fr (JM); petit

  4. Foundational perspectives on causality in large-scale brain networks

    NASA Astrophysics Data System (ADS)

    Mannino, Michael; Bressler, Steven L.

    2015-12-01

    A profusion of recent work in cognitive neuroscience has been concerned with the endeavor to uncover causal influences in large-scale brain networks. However, despite the fact that many papers give a nod to the important theoretical challenges posed by the concept of causality, this explosion of research has generally not been accompanied by a rigorous conceptual analysis of the nature of causality in the brain. This review provides both a descriptive and prescriptive account of the nature of causality as found within and between large-scale brain networks. In short, it seeks to clarify the concept of causality in large-scale brain networks both philosophically and scientifically. This is accomplished by briefly reviewing the rich philosophical history of work on causality, especially focusing on contributions by David Hume, Immanuel Kant, Bertrand Russell, and Christopher Hitchcock. We go on to discuss the impact that various interpretations of modern physics have had on our understanding of causality. Throughout all this, a central focus is the distinction between theories of deterministic causality (DC), whereby causes uniquely determine their effects, and probabilistic causality (PC), whereby causes change the probability of occurrence of their effects. We argue that, given the topological complexity of its large-scale connectivity, the brain should be considered as a complex system and its causal influences treated as probabilistic in nature. We conclude that PC is well suited for explaining causality in the brain for three reasons: (1) brain causality is often mutual; (2) connectional convergence dictates that only rarely is the activity of one neuronal population uniquely determined by another one; and (3) the causal influences exerted between neuronal populations may not have observable effects. A number of different techniques are currently available to characterize causal influence in the brain. Typically, these techniques quantify the statistical

  5. Chemical modifications accompanying blueschist facies metamorphism of Franciscan conglomerates, Diablo Range, California

    USGS Publications Warehouse

    Moore, Diane E.; Liou, J.G.; King, B.-S.

    1981-01-01

    As part of an investigation of blueschist-facies mineral parageneses in pebbles and matrix of some Franciscan metaconglomerates of the Diablo Range, California, textural and major-element chemical analyses were conducted on a number of igneous pebbles that comprise a range of rock types from granite and dacite to gabbro and basalt. Compositions of the igneous pebbles differ significantly from common igneous rocks, particularly with respect to Ca, K, Na, Si and H2O. The SiO2 and H2O contents are characteristically high and the K2O contents low. The CaO and Na2O contents may be relatively enriched or reduced in different pebbles. The igneous pebbles show little evidence of alteration prior to their incorporation into the Franciscan conglomerates, and the chemical modifications are considered to have been produced during metamorphism of the conglomerates to (lawsonite + albite + aragonite ?? jadeite)-bearing assemblages. The observed variations in the pebbles are shown to be functions of: (1) bulk chemistry; (2) the igneous mineral assemblage; (3) the stable metamorphic mineral assemblage; and (4) the composition of pore fluids in the conglomerates. The relative proportions of Mg and Fe in most of the pebbles apparently have been unaffected by the metamorphism, and these parameters, along with other textural and chemical factors, were used to determine the petrogenetic affinities of the igneous pebbles. The plutonic and most of the volcanic pebbles correspond to calc-alkaline rock series, whereas a few volcanic pebbles show apparent Fe-enrichment characteristic of tholeiitic rocks. A continental margin arc-batholith complex would be the best source for these igneous detrital assemblages. Conglomerates in local areas differ in igneous lithologies from conglomerates in other areas and probably differ somewhat in age, perhaps reflecting varying degrees of unroofing of such a complex during deposition of Franciscan sediments. ?? 1981.

  6. PROPERTIES IMPORTANT TO MIXING FOR WTP LARGE SCALE INTEGRATED TESTING

    SciTech Connect

    Koopman, D.; Martino, C.; Poirier, M.

    2012-04-26

    Large Scale Integrated Testing (LSIT) is being planned by Bechtel National, Inc. to address uncertainties in the full scale mixing performance of the Hanford Waste Treatment and Immobilization Plant (WTP). Testing will use simulated waste rather than actual Hanford waste. Therefore, the use of suitable simulants is critical to achieving the goals of the test program. External review boards have raised questions regarding the overall representativeness of simulants used in previous mixing tests. Accordingly, WTP requested the Savannah River National Laboratory (SRNL) to assist with development of simulants for use in LSIT. Among the first tasks assigned to SRNL was to develop a list of waste properties that matter to pulse-jet mixer (PJM) mixing of WTP tanks. This report satisfies Commitment 5.2.3.1 of the Department of Energy Implementation Plan for Defense Nuclear Facilities Safety Board Recommendation 2010-2: physical properties important to mixing and scaling. In support of waste simulant development, the following two objectives are the focus of this report: (1) Assess physical and chemical properties important to the testing and development of mixing scaling relationships; (2) Identify the governing properties and associated ranges for LSIT to achieve the Newtonian and non-Newtonian test objectives. This includes the properties to support testing of sampling and heel management systems. The test objectives for LSIT relate to transfer and pump out of solid particles, prototypic integrated operations, sparger operation, PJM controllability, vessel level/density measurement accuracy, sampling, heel management, PJM restart, design and safety margin, Computational Fluid Dynamics (CFD) Verification and Validation (V and V) and comparison, performance testing and scaling, and high temperature operation. The slurry properties that are most important to Performance Testing and Scaling depend on the test objective and rheological classification of the slurry (i

  7. Reorganisation of the large-scale structures in turbulent boundary layers using highly ordered and directional surface roughness

    NASA Astrophysics Data System (ADS)

    Kevin, -; Nugroho, Bagus; Pathikonda, Gokul; Barros, Julio; Christensen, Kenneth; Monty, Jason; Hutchins, Nicholas; UoM-UIUC riblets study Collaboration

    2014-11-01

    The potential of riblet-type surface roughness with converging-diverging (herring-bone type) arrangements to reorganise the large-scale coherent structures that populate the logarithmic region of turbulent boundary layers is investigated at moderate Reynolds number. The ability of this transitionally rough surface to generate large-scale counter rotating roll-modes suggests that a preferential arrangement of the naturally occurring large-scale structures may have been introduced. Prior analysis of the pre-multiplied energy spectra of streamwise velocity fluctuation indicates an increase (or decrease) in the large-scale streamwise turbulence energy over the converging region (or diverging) of the riblets. In this study we examine this possible spanwise redistribution of the coherent structures using instantaneous planar Particle Image Velocimetry (PIV) in the wall-parallel plane (within the logarithmic region) as well as cross-plane Stereoscopic PIV. The characteristics of the large-scale structure over the converging-diverging surface are compared with those of the corresponding smooth-wall case, revealing pronounced modification of the size, strength and alignment of these features over the directional surface. Collaboration between University of Melbourne and University of Illinois on converging-diverging riblets study.

  8. Site-specific chemical modification of recombinant proteins produced in mammalian cells by using the genetically encoded aldehyde tag.

    PubMed

    Wu, Peng; Shui, Wenqing; Carlson, Brian L; Hu, Nancy; Rabuka, David; Lee, Julia; Bertozzi, Carolyn R

    2009-03-01

    The properties of therapeutic proteins can be enhanced by chemical modification. Methods for site-specific protein conjugation are critical to such efforts. Here, we demonstrate that recombinant proteins expressed in mammalian cells can be site-specifically modified by using a genetically encoded aldehyde tag. We introduced the peptide sequence recognized by the endoplasmic reticulum (ER)-resident formylglycine generating enzyme (FGE), which can be as short as 6 residues, into heterologous proteins expressed in mammalian cells. Cotranslational modification of the proteins by FGE produced products bearing a unique aldehyde group. Proteins bearing this "aldehyde tag" were chemically modified by selective reaction with hydrazide- or aminooxy-functionalized reagents. We applied the technique to site-specific modification of monoclonal antibodies, the fastest growing class of biopharmaceuticals, as well as membrane-associated and cytosolic proteins expressed in mammalian cells. PMID:19202059

  9. Large-scale smart passive system for civil engineering applications

    NASA Astrophysics Data System (ADS)

    Jung, Hyung-Jo; Jang, Dong-Doo; Lee, Heon-Jae; Cho, Sang-Won

    2008-03-01

    The smart passive system consisting of a magnetorheological (MR) damper and an electromagnetic induction (EMI) part has been recently proposed. An EMI part can generate the input current for an MR damper from vibration of a structure according to Faraday's law of electromagnetic induction. The control performance of the smart passive system has been demonstrated mainly by numerical simulations. It was verified from the numerical results that the system could be effective to reduce the structural responses in the cases of civil engineering structures such as buildings and bridges. On the other hand, the experimental validation of the system is not sufficiently conducted yet. In this paper, the feasibility of the smart passive system to real-scale structures is investigated. To do this, the large-scale smart passive system is designed, manufactured, and tested. The system consists of the large-capacity MR damper, which has a maximum force level of approximately +/-10,000N, a maximum stroke level of +/-35mm and the maximum current level of 3 A, and the large-scale EMI part, which is designed to generate sufficient induced current for the damper. The applicability of the smart passive system to large real-scale structures is examined through a series of shaking table tests. The magnitudes of the induced current of the EMI part with various sinusoidal excitation inputs are measured. According to the test results, the large-scale EMI part shows the possibility that it could generate the sufficient current or power for changing the damping characteristics of the large-capacity MR damper.

  10. Constraints on large-scale dark acoustic oscillations from cosmology

    NASA Astrophysics Data System (ADS)

    Cyr-Racine, Francis-Yan; de Putter, Roland; Raccanelli, Alvise; Sigurdson, Kris

    2014-03-01

    If all or a fraction of the dark matter (DM) were coupled to a bath of dark radiation (DR) in the early Universe, we expect the combined DM-DR system to give rise to acoustic oscillations of the dark matter until it decouples from the DR. Much like the standard baryon acoustic oscillations, these dark acoustic oscillations (DAO) imprint a characteristic scale, the sound horizon of dark matter, on the matter power spectrum. We compute in detail how the microphysics of the DM-DR interaction affects the clustering of matter in the Universe and show that the DAO physics also gives rise to unique signatures in the temperature and polarization spectra of the cosmic microwave background (CMB). We use cosmological data from the CMB, baryon acoustic oscillations, and large-scale structure to constrain the possible fraction of interacting DM as well as the strength of its interaction with DR. Like nearly all knowledge we have gleaned about DM since inferring its existence this constraint rests on the betrayal by gravity of the location of otherwise invisible DM. Although our results can be straightforwardly applied to a broad class of models that couple dark matter particles to various light relativistic species, in order to make quantitative predictions, we model the interacting component as dark atoms coupled to a bath of dark photons. We find that linear cosmological data and CMB lensing put strong constraints on the existence of DAO features in the CMB and the large-scale structure of the Universe. Interestingly, we find that at most ˜5% of all DM can be very strongly interacting with DR. We show that our results are surprisingly constraining for the recently proposed double-disk DM model, a novel example of how large-scale precision cosmological data can be used to constrain galactic physics and subgalactic structure.

  11. Solving large scale structure in ten easy steps with COLA

    NASA Astrophysics Data System (ADS)

    Tassev, Svetlin; Zaldarriaga, Matias; Eisenstein, Daniel J.

    2013-06-01

    We present the COmoving Lagrangian Acceleration (COLA) method: an N-body method for solving for Large Scale Structure (LSS) in a frame that is comoving with observers following trajectories calculated in Lagrangian Perturbation Theory (LPT). Unlike standard N-body methods, the COLA method can straightforwardly trade accuracy at small-scales in order to gain computational speed without sacrificing accuracy at large scales. This is especially useful for cheaply generating large ensembles of accurate mock halo catalogs required to study galaxy clustering and weak lensing, as those catalogs are essential for performing detailed error analysis for ongoing and future surveys of LSS. As an illustration, we ran a COLA-based N-body code on a box of size 100 Mpc/h with particles of mass ≈ 5 × 109Msolar/h. Running the code with only 10 timesteps was sufficient to obtain an accurate description of halo statistics down to halo masses of at least 1011Msolar/h. This is only at a modest speed penalty when compared to mocks obtained with LPT. A standard detailed N-body run is orders of magnitude slower than our COLA-based code. The speed-up we obtain with COLA is due to the fact that we calculate the large-scale dynamics exactly using LPT, while letting the N-body code solve for the small scales, without requiring it to capture exactly the internal dynamics of halos. Achieving a similar level of accuracy in halo statistics without the COLA method requires at least 3 times more timesteps than when COLA is employed.

  12. Large-Scale Hybrid Motor Testing. Chapter 10

    NASA Technical Reports Server (NTRS)

    Story, George

    2006-01-01

    Hybrid rocket motors can be successfully demonstrated at a small scale virtually anywhere. There have been many suitcase sized portable test stands assembled for demonstration of hybrids. They show the safety of hybrid rockets to the audiences. These small show motors and small laboratory scale motors can give comparative burn rate data for development of different fuel/oxidizer combinations, however questions that are always asked when hybrids are mentioned for large scale applications are - how do they scale and has it been shown in a large motor? To answer those questions, large scale motor testing is required to verify the hybrid motor at its true size. The necessity to conduct large-scale hybrid rocket motor tests to validate the burn rate from the small motors to application size has been documented in several place^'^^.^. Comparison of small scale hybrid data to that of larger scale data indicates that the fuel burn rate goes down with increasing port size, even with the same oxidizer flux. This trend holds for conventional hybrid motors with forward oxidizer injection and HTPB based fuels. While the reason this is occurring would make a great paper or study or thesis, it is not thoroughly understood at this time. Potential causes include the fact that since hybrid combustion is boundary layer driven, the larger port sizes reduce the interaction (radiation, mixing and heat transfer) from the core region of the port. This chapter focuses on some of the large, prototype sized testing of hybrid motors. The largest motors tested have been AMROC s 250K-lbf thrust motor at Edwards Air Force Base and the Hybrid Propulsion Demonstration Program s 250K-lbf thrust motor at Stennis Space Center. Numerous smaller tests were performed to support the burn rate, stability and scaling concepts that went into the development of those large motors.

  13. LARGE-SCALE CO2 TRANSPORTATION AND DEEP OCEAN SEQUESTRATION

    SciTech Connect

    Hamid Sarv

    1999-03-01

    Technical and economical feasibility of large-scale CO{sub 2} transportation and ocean sequestration at depths of 3000 meters or grater was investigated. Two options were examined for transporting and disposing the captured CO{sub 2}. In one case, CO{sub 2} was pumped from a land-based collection center through long pipelines laid on the ocean floor. Another case considered oceanic tanker transport of liquid carbon dioxide to an offshore floating structure for vertical injection to the ocean floor. In the latter case, a novel concept based on subsurface towing of a 3000-meter pipe, and attaching it to the offshore structure was considered. Budgetary cost estimates indicate that for distances greater than 400 km, tanker transportation and offshore injection through a 3000-meter vertical pipe provides the best method for delivering liquid CO{sub 2} to deep ocean floor depressions. For shorter distances, CO{sub 2} delivery by parallel-laid, subsea pipelines is more cost-effective. Estimated costs for 500-km transport and storage at a depth of 3000 meters by subsea pipelines and tankers were 1.5 and 1.4 dollars per ton of stored CO{sub 2}, respectively. At these prices, economics of ocean disposal are highly favorable. Future work should focus on addressing technical issues that are critical to the deployment of a large-scale CO{sub 2} transportation and disposal system. Pipe corrosion, structural design of the transport pipe, and dispersion characteristics of sinking CO{sub 2} effluent plumes have been identified as areas that require further attention. Our planned activities in the next Phase include laboratory-scale corrosion testing, structural analysis of the pipeline, analytical and experimental simulations of CO{sub 2} discharge and dispersion, and the conceptual economic and engineering evaluation of large-scale implementation.

  14. Solving large scale structure in ten easy steps with COLA

    SciTech Connect

    Tassev, Svetlin; Zaldarriaga, Matias; Eisenstein, Daniel J. E-mail: matiasz@ias.edu

    2013-06-01

    We present the COmoving Lagrangian Acceleration (COLA) method: an N-body method for solving for Large Scale Structure (LSS) in a frame that is comoving with observers following trajectories calculated in Lagrangian Perturbation Theory (LPT). Unlike standard N-body methods, the COLA method can straightforwardly trade accuracy at small-scales in order to gain computational speed without sacrificing accuracy at large scales. This is especially useful for cheaply generating large ensembles of accurate mock halo catalogs required to study galaxy clustering and weak lensing, as those catalogs are essential for performing detailed error analysis for ongoing and future surveys of LSS. As an illustration, we ran a COLA-based N-body code on a box of size 100 Mpc/h with particles of mass ≈ 5 × 10{sup 9}M{sub s}un/h. Running the code with only 10 timesteps was sufficient to obtain an accurate description of halo statistics down to halo masses of at least 10{sup 11}M{sub s}un/h. This is only at a modest speed penalty when compared to mocks obtained with LPT. A standard detailed N-body run is orders of magnitude slower than our COLA-based code. The speed-up we obtain with COLA is due to the fact that we calculate the large-scale dynamics exactly using LPT, while letting the N-body code solve for the small scales, without requiring it to capture exactly the internal dynamics of halos. Achieving a similar level of accuracy in halo statistics without the COLA method requires at least 3 times more timesteps than when COLA is employed.

  15. Infectious diseases in large-scale cat hoarding investigations.

    PubMed

    Polak, K C; Levy, J K; Crawford, P C; Leutenegger, C M; Moriello, K A

    2014-08-01

    Animal hoarders accumulate animals in over-crowded conditions without adequate nutrition, sanitation, and veterinary care. As a result, animals rescued from hoarding frequently have a variety of medical conditions including respiratory infections, gastrointestinal disease, parasitism, malnutrition, and other evidence of neglect. The purpose of this study was to characterize the infectious diseases carried by clinically affected cats and to determine the prevalence of retroviral infections among cats in large-scale cat hoarding investigations. Records were reviewed retrospectively from four large-scale seizures of cats from failed sanctuaries from November 2009 through March 2012. The number of cats seized in each case ranged from 387 to 697. Cats were screened for feline leukemia virus (FeLV) and feline immunodeficiency virus (FIV) in all four cases and for dermatophytosis in one case. A subset of cats exhibiting signs of upper respiratory disease or diarrhea had been tested for infections by PCR and fecal flotation for treatment planning. Mycoplasma felis (78%), calicivirus (78%), and Streptococcus equi subspecies zooepidemicus (55%) were the most common respiratory infections. Feline enteric coronavirus (88%), Giardia (56%), Clostridium perfringens (49%), and Tritrichomonas foetus (39%) were most common in cats with diarrhea. The seroprevalence of FeLV and FIV were 8% and 8%, respectively. In the one case in which cats with lesions suspicious for dermatophytosis were cultured for Microsporum canis, 69/76 lesional cats were culture-positive; of these, half were believed to be truly infected and half were believed to be fomite carriers. Cats from large-scale hoarding cases had high risk for enteric and respiratory infections, retroviruses, and dermatophytosis. Case responders should be prepared for mass treatment of infectious diseases and should implement protocols to prevent transmission of feline or zoonotic infections during the emergency response and when

  16. Statistical Modeling of Large-Scale Scientific Simulation Data

    SciTech Connect

    Eliassi-Rad, T; Baldwin, C; Abdulla, G; Critchlow, T

    2003-11-15

    With the advent of massively parallel computer systems, scientists are now able to simulate complex phenomena (e.g., explosions of a stars). Such scientific simulations typically generate large-scale data sets over the spatio-temporal space. Unfortunately, the sheer sizes of the generated data sets make efficient exploration of them impossible. Constructing queriable statistical models is an essential step in helping scientists glean new insight from their computer simulations. We define queriable statistical models to be descriptive statistics that (1) summarize and describe the data within a user-defined modeling error, and (2) are able to answer complex range-based queries over the spatiotemporal dimensions. In this chapter, we describe systems that build queriable statistical models for large-scale scientific simulation data sets. In particular, we present our Ad-hoc Queries for Simulation (AQSim) infrastructure, which reduces the data storage requirements and query access times by (1) creating and storing queriable statistical models of the data at multiple resolutions, and (2) evaluating queries on these models of the data instead of the entire data set. Within AQSim, we focus on three simple but effective statistical modeling techniques. AQSim's first modeling technique (called univariate mean modeler) computes the ''true'' (unbiased) mean of systematic partitions of the data. AQSim's second statistical modeling technique (called univariate goodness-of-fit modeler) uses the Andersen-Darling goodness-of-fit method on systematic partitions of the data. Finally, AQSim's third statistical modeling technique (called multivariate clusterer) utilizes the cosine similarity measure to cluster the data into similar groups. Our experimental evaluations on several scientific simulation data sets illustrate the value of using these statistical models on large-scale simulation data sets.

  17. Improving Design Efficiency for Large-Scale Heterogeneous Circuits

    NASA Astrophysics Data System (ADS)

    Gregerson, Anthony

    Despite increases in logic density, many Big Data applications must still be partitioned across multiple computing devices in order to meet their strict performance requirements. Among the most demanding of these applications is high-energy physics (HEP), which uses complex computing systems consisting of thousands of FPGAs and ASICs to process the sensor data created by experiments at particles accelerators such as the Large Hadron Collider (LHC). Designing such computing systems is challenging due to the scale of the systems, the exceptionally high-throughput and low-latency performance constraints that necessitate application-specific hardware implementations, the requirement that algorithms are efficiently partitioned across many devices, and the possible need to update the implemented algorithms during the lifetime of the system. In this work, we describe our research to develop flexible architectures for implementing such large-scale circuits on FPGAs. In particular, this work is motivated by (but not limited in scope to) high-energy physics algorithms for the Compact Muon Solenoid (CMS) experiment at the LHC. To make efficient use of logic resources in multi-FPGA systems, we introduce Multi-Personality Partitioning, a novel form of the graph partitioning problem, and present partitioning algorithms that can significantly improve resource utilization on heterogeneous devices while also reducing inter-chip connections. To reduce the high communication costs of Big Data applications, we also introduce Information-Aware Partitioning, a partitioning method that analyzes the data content of application-specific circuits, characterizes their entropy, and selects circuit partitions that enable efficient compression of data between chips. We employ our information-aware partitioning method to improve the performance of the hardware validation platform for evaluating new algorithms for the CMS experiment. Together, these research efforts help to improve the efficiency

  18. Solving Large-scale Eigenvalue Problems in SciDACApplications

    SciTech Connect

    Yang, Chao

    2005-06-29

    Large-scale eigenvalue problems arise in a number of DOE applications. This paper provides an overview of the recent development of eigenvalue computation in the context of two SciDAC applications. We emphasize the importance of Krylov subspace methods, and point out its limitations. We discuss the value of alternative approaches that are more amenable to the use of preconditioners, and report the progression using the multi-level algebraic sub-structuring techniques to speed up eigenvalue calculation. In addition to methods for linear eigenvalue problems, we also examine new approaches to solving two types of non-linear eigenvalue problems arising from SciDAC applications.

  19. Why large-scale seasonal streamflow forecasts are feasible

    NASA Astrophysics Data System (ADS)

    Bierkens, M. F.; Candogan Yossef, N.; Van Beek, L. P.

    2011-12-01

    Seasonal forecasts of precipitation and temperature, using either statistical or dynamic prediction, have been around for almost 2 decades. The skill of these forecasts differ both in space and time, with highest skill in areas heavily influenced by SST anomalies such as El Nino or areas where land surface properties have a major impact on e.g. Monsoon strength, such as the vegetation cover of the Sahel region or the snow cover of the Tibetan plateau. However, the skill of seasonal forecasts is limited in most regions, with anomaly correlation coefficients varying between 0.2 and 0.5 for 1-3 month precipitation totals. This raises the question whether seasonal hydrological forecasting is feasible. Here, we make the case that it is. Using the example of statistical forecasts of NAO-strength and related precipitation anomalies over Europe, we show that the skill of large-scale streamflow forecasts is generally much higher than the precipitation forecasts itself, provided that the initial state of the system is accurately estimated. In the latter case, even the precipitation climatology can produce skillful results. This is due to the inertia of the hydrological system rooted in the storage of soil moisture, groundwater and snow pack, as corroborated by a recent study using snow observations for seasonal streamflow forecasting in the Western US. These examples seem to suggest that for accurate seasonal hydrological forecasting, correct state estimation is more important than accurate seasonal meteorological forecasts. However, large-scale estimation of hydrological states is difficult and validation of large-scale hydrological models often reveals large biases in e.g. streamflow estimates. Fortunately, as shown with a validation study of the global model PCR-GLOBWB, these biases are of less importance when seasonal forecasts are evaluated in terms of their ability to reproduce anomalous flows and extreme events, i.e. by anomaly correlations or categorical quantile

  20. Quantum computation for large-scale image classification

    NASA Astrophysics Data System (ADS)

    Ruan, Yue; Chen, Hanwu; Tan, Jianing; Li, Xi

    2016-07-01

    Due to the lack of an effective quantum feature extraction method, there is currently no effective way to perform quantum image classification or recognition. In this paper, for the first time, a global quantum feature extraction method based on Schmidt decomposition is proposed. A revised quantum learning algorithm is also proposed that will classify images by computing the Hamming distance of these features. From the experimental results derived from the benchmark database Caltech 101, and an analysis of the algorithm, an effective approach to large-scale image classification is derived and proposed against the background of big data.

  1. UAV Data Processing for Large Scale Topographical Mapping

    NASA Astrophysics Data System (ADS)

    Tampubolon, W.; Reinhardt, W.

    2014-06-01

    Large scale topographical mapping in the third world countries is really a prominent challenge in geospatial industries nowadays. On one side the demand is significantly increasing while on the other hand it is constrained by limited budgets available for mapping projects. Since the advent of Act Nr.4/yr.2011 about Geospatial Information in Indonesia, large scale topographical mapping has been on high priority for supporting the nationwide development e.g. detail spatial planning. Usually large scale topographical mapping relies on conventional aerial survey campaigns in order to provide high resolution 3D geospatial data sources. Widely growing on a leisure hobby, aero models in form of the so-called Unmanned Aerial Vehicle (UAV) bring up alternative semi photogrammetric aerial data acquisition possibilities suitable for relatively small Area of Interest (AOI) i.e. <5,000 hectares. For detail spatial planning purposes in Indonesia this area size can be used as a mapping unit since it usually concentrates on the basis of sub district area (kecamatan) level. In this paper different camera and processing software systems will be further analyzed for identifying the best optimum UAV data acquisition campaign components in combination with the data processing scheme. The selected AOI is covering the cultural heritage of Borobudur Temple as one of the Seven Wonders of the World. A detailed accuracy assessment will be concentrated within the object feature of the temple at the first place. Feature compilation involving planimetric objects (2D) and digital terrain models (3D) will be integrated in order to provide Digital Elevation Models (DEM) as the main interest of the topographic mapping activity. By doing this research, incorporating the optimum amount of GCPs in the UAV photo data processing will increase the accuracy along with its high resolution in 5 cm Ground Sampling Distance (GSD). Finally this result will be used as the benchmark for alternative geospatial

  2. Inflation in de Sitter spacetime and CMB large scale anomaly

    NASA Astrophysics Data System (ADS)

    Zhao, Dong; Li, Ming-Hua; Wang, Ping; Chang, Zhe

    2015-09-01

    The influence of cosmological constant-type dark energy in the early universe is investigated. This is accommodated by a new dispersion relation in de Sitter spacetime. We perform a global fit to explore the cosmological parameter space by using the CosmoMC package with the recently released Planck TT and WMAP polarization datasets. Using the results from the global fit, we compute a new CMB temperature-temperature (TT) spectrum. The obtained TT spectrum has lower power compared with that based on the ACDM model at large scales. Supported by National Natural Science Foundation of China (11375203)

  3. Large scale obscuration and related climate effects open literature bibliography

    SciTech Connect

    Russell, N.A.; Geitgey, J.; Behl, Y.K.; Zak, B.D.

    1994-05-01

    Large scale obscuration and related climate effects of nuclear detonations first became a matter of concern in connection with the so-called ``Nuclear Winter Controversy`` in the early 1980`s. Since then, the world has changed. Nevertheless, concern remains about the atmospheric effects of nuclear detonations, but the source of concern has shifted. Now it focuses less on global, and more on regional effects and their resulting impacts on the performance of electro-optical and other defense-related systems. This bibliography reflects the modified interest.

  4. Large-scale sodium spray fire code validation (SOFICOV) test

    SciTech Connect

    Jeppson, D.W.; Muhlestein, L.D.

    1985-01-01

    A large-scale, sodium, spray fire code validation test was performed in the HEDL 850-m/sup 3/ Containment System Test Facility (CSTF) as part of the Sodium Spray Fire Code Validation (SOFICOV) program. Six hundred fifty eight kilograms of sodium spray was sprayed in an air atmosphere for a period of 2400 s. The sodium spray droplet sizes and spray pattern distribution were estimated. The containment atmosphere temperature and pressure response, containment wall temperature response and sodium reaction rate with oxygen were measured. These results are compared to post-test predictions using SPRAY and NACOM computer codes.

  5. Radiative shocks on large scale lasers. Preliminary results

    NASA Astrophysics Data System (ADS)

    Leygnac, S.; Bouquet, S.; Stehle, C.; Barroso, P.; Batani, D.; Benuzzi, A.; Cathala, B.; Chièze, J.-P.; Fleury, X.; Grandjouan, N.; Grenier, J.; Hall, T.; Henry, E.; Koenig, M.; Lafon, J. P. J.; Malka, V.; Marchet, B.; Merdji, H.; Michaut, C.; Poles, L.; Thais, F.

    2001-05-01

    Radiative shocks, those structure is strongly influenced by the radiation field, are present in various astrophysical objects (circumstellar envelopes of variable stars, supernovae ...). Their modeling is very difficult and thus will take benefit from experimental informations. This approach is now possible using large scale lasers. Preliminary experiments have been performed with the nanosecond LULI laser at Ecole Polytechnique (France) in 2000. A radiative shock has been obtained in a low pressure xenon cell. The preparation of such experiments and their interpretation is performed using analytical calculations and numerical simulations.

  6. On the analysis of large-scale genomic structures.

    PubMed

    Oiwa, Nestor Norio; Goldman, Carla

    2005-01-01

    We apply methods from statistical physics (histograms, correlation functions, fractal dimensions, and singularity spectra) to characterize large-scale structure of the distribution of nucleotides along genomic sequences. We discuss the role of the extension of noncoding segments ("junk DNA") for the genomic organization, and the connection between the coding segment distribution and the high-eukaryotic chromatin condensation. The following sequences taken from GenBank were analyzed: complete genome of Xanthomonas campestri, complete genome of yeast, chromosome V of Caenorhabditis elegans, and human chromosome XVII around gene BRCA1. The results are compared with the random and periodic sequences and those generated by simple and generalized fractal Cantor sets. PMID:15858230

  7. Floodplain management in Africa: Large scale analysis of flood data

    NASA Astrophysics Data System (ADS)

    Padi, Philip Tetteh; Baldassarre, Giuliano Di; Castellarin, Attilio

    2011-01-01

    To mitigate a continuously increasing flood risk in Africa, sustainable actions are urgently needed. In this context, we describe a comprehensive statistical analysis of flood data in the African continent. The study refers to quality-controlled, large and consistent databases of flood data, i.e. maximum discharge value and times series of annual maximum flows. Probabilistic envelope curves are derived for the African continent by means of a large scale regional analysis. Moreover, some initial insights on the statistical characteristics of African floods are provided. The results of this study are relevant and can be used to get some indications to support flood management in Africa.

  8. Novel algorithm of large-scale simultaneous linear equations.

    PubMed

    Fujiwara, T; Hoshi, T; Yamamoto, S; Sogabe, T; Zhang, S-L

    2010-02-24

    We review our recently developed methods of solving large-scale simultaneous linear equations and applications to electronic structure calculations both in one-electron theory and many-electron theory. This is the shifted COCG (conjugate orthogonal conjugate gradient) method based on the Krylov subspace, and the most important issue for applications is the shift equation and the seed switching method, which greatly reduce the computational cost. The applications to nano-scale Si crystals and the double orbital extended Hubbard model are presented. PMID:21386384

  9. Large Scale Composite Manufacturing for Heavy Lift Launch Vehicles

    NASA Technical Reports Server (NTRS)

    Stavana, Jacob; Cohen, Leslie J.; Houseal, Keth; Pelham, Larry; Lort, Richard; Zimmerman, Thomas; Sutter, James; Western, Mike; Harper, Robert; Stuart, Michael

    2012-01-01

    Risk reduction for the large scale composite manufacturing is an important goal to produce light weight components for heavy lift launch vehicles. NASA and an industry team successfully employed a building block approach using low-cost Automated Tape Layup (ATL) of autoclave and Out-of-Autoclave (OoA) prepregs. Several large, curved sandwich panels were fabricated at HITCO Carbon Composites. The aluminum honeycomb core sandwich panels are segments of a 1/16th arc from a 10 meter cylindrical barrel. Lessons learned highlight the manufacturing challenges required to produce light weight composite structures such as fairings for heavy lift launch vehicles.

  10. A multilevel optimization of large-scale dynamic systems

    NASA Technical Reports Server (NTRS)

    Siljak, D. D.; Sundareshan, M. K.

    1976-01-01

    A multilevel feedback control scheme is proposed for optimization of large-scale systems composed of a number of (not necessarily weakly coupled) subsystems. Local controllers are used to optimize each subsystem, ignoring the interconnections. Then, a global controller may be applied to minimize the effect of interconnections and improve the performance of the overall system. At the cost of suboptimal performance, this optimization strategy ensures invariance of suboptimality and stability of the systems under structural perturbations whereby subsystems are disconnected and again connected during operation.

  11. Design of a large-scale CFB boiler

    SciTech Connect

    Darling, S.; Li, S.

    1997-12-31

    Many CFB boilers sized 100--150 MWe are in operation, and several others sized 150--250 MWe are in operation or under construction. The next step for CFB technology is the 300--400 MWe size range. This paper will describe Foster Wheeler`s large-scale CFB boiler experience and the design for a 300 MWe CFB boiler. The authors will show how the design incorporates Foster Wheeler`s unique combination of extensive utility experience and CFB boiler experience. All the benefits of CFB technology which include low emissions, fuel flexibility, low maintenance and competitive cost are now available in the 300--400 MWe size range.

  12. [National Strategic Promotion for Large-Scale Clinical Cancer Research].

    PubMed

    Toyama, Senya

    2016-04-01

    The number of clinical research by clinical cancer study groups has been decreasing this year in Japan. They say the reason is the abolition of donations to the groups from the pharmaceutical companies after the Diovan scandal. But I suppose fundamental problem is that government-supported large-scale clinical cancer study system for evidence based medicine (EBM) has not been fully established. An urgent establishment of the system based on the national strategy is needed for the cancer patients and the public health promotion. PMID:27220800

  13. Large-Scale periodic solar velocities: An observational study

    NASA Technical Reports Server (NTRS)

    Dittmer, P. H.

    1977-01-01

    Observations of large-scale solar velocities were made using the mean field telescope and Babcock magnetograph of the Stanford Solar Observatory. Observations were made in the magnetically insensitive ion line at 5124 A, with light from the center (limb) of the disk right (left) circularly polarized, so that the magnetograph measures the difference in wavelength between center and limb. Computer calculations are made of the wavelength difference produced by global pulsations for spherical harmonics up to second order and of the signal produced by displacing the solar image relative to polarizing optics or diffraction grating.

  14. Laser Welding of Large Scale Stainless Steel Aircraft Structures

    NASA Astrophysics Data System (ADS)

    Reitemeyer, D.; Schultz, V.; Syassen, F.; Seefeld, T.; Vollertsen, F.

    In this paper a welding process for large scale stainless steel structures is presented. The process was developed according to the requirements of an aircraft application. Therefore, stringers are welded on a skin sheet in a t-joint configuration. The 0.6 mm thickness parts are welded with a thin disc laser, seam length up to 1920 mm are demonstrated. The welding process causes angular distortions of the skin sheet which are compensated by a subsequent laser straightening process. Based on a model straightening process parameters matching the induced welding distortion are predicted. The process combination is successfully applied to stringer stiffened specimens.

  15. Enabling Large-Scale Biomedical Analysis in the Cloud

    PubMed Central

    Lin, Ying-Chih; Yu, Chin-Sheng; Lin, Yen-Jen

    2013-01-01

    Recent progress in high-throughput instrumentations has led to an astonishing growth in both volume and complexity of biomedical data collected from various sources. The planet-size data brings serious challenges to the storage and computing technologies. Cloud computing is an alternative to crack the nut because it gives concurrent consideration to enable storage and high-performance computing on large-scale data. This work briefly introduces the data intensive computing system and summarizes existing cloud-based resources in bioinformatics. These developments and applications would facilitate biomedical research to make the vast amount of diversification data meaningful and usable. PMID:24288665

  16. Generation of Large-Scale Winds in Horizontally Anisotropic Convection.

    PubMed

    von Hardenberg, J; Goluskin, D; Provenzale, A; Spiegel, E A

    2015-09-25

    We simulate three-dimensional, horizontally periodic Rayleigh-Bénard convection, confined between free-slip horizontal plates and rotating about a distant horizontal axis. When both the temperature difference between the plates and the rotation rate are sufficiently large, a strong horizontal wind is generated that is perpendicular to both the rotation vector and the gravity vector. The wind is turbulent, large-scale, and vertically sheared. Horizontal anisotropy, engendered here by rotation, appears necessary for such wind generation. Most of the kinetic energy of the flow resides in the wind, and the vertical turbulent heat flux is much lower on average than when there is no wind. PMID:26451558

  17. Large-Scale Purification of Peroxisomes for Preparative Applications.

    PubMed

    Cramer, Jana; Effelsberg, Daniel; Girzalsky, Wolfgang; Erdmann, Ralf

    2015-09-01

    This protocol is designed for large-scale isolation of highly purified peroxisomes from Saccharomyces cerevisiae using two consecutive density gradient centrifugations. Instructions are provided for harvesting up to 60 g of oleic acid-induced yeast cells for the preparation of spheroplasts and generation of organellar pellets (OPs) enriched in peroxisomes and mitochondria. The OPs are loaded onto eight continuous 36%-68% (w/v) sucrose gradients. After centrifugation, the peak peroxisomal fractions are determined by measurement of catalase activity. These fractions are subsequently pooled and subjected to a second density gradient centrifugation using 20%-40% (w/v) Nycodenz. PMID:26330621

  18. Enabling large-scale biomedical analysis in the cloud.

    PubMed

    Lin, Ying-Chih; Yu, Chin-Sheng; Lin, Yen-Jen

    2013-01-01

    Recent progress in high-throughput instrumentations has led to an astonishing growth in both volume and complexity of biomedical data collected from various sources. The planet-size data brings serious challenges to the storage and computing technologies. Cloud computing is an alternative to crack the nut because it gives concurrent consideration to enable storage and high-performance computing on large-scale data. This work briefly introduces the data intensive computing system and summarizes existing cloud-based resources in bioinformatics. These developments and applications would facilitate biomedical research to make the vast amount of diversification data meaningful and usable. PMID:24288665

  19. Monochromatic waves induced by large-scale parametric forcing.

    PubMed

    Nepomnyashchy, A; Abarzhi, S I

    2010-03-01

    We study the formation and stability of monochromatic waves induced by large-scale modulations in the framework of the complex Ginzburg-Landau equation with parametric nonresonant forcing dependent on the spatial coordinate. In the limiting case of forcing with very large characteristic length scale, analytical solutions for the equation are found and conditions of their existence are outlined. Stability analysis indicates that the interval of existence of a monochromatic wave can contain a subinterval where the wave is stable. We discuss potential applications of the model in rheology, fluid dynamics, and optics. PMID:20365907

  20. Chemical modifications of polymer films induced by high energy heavy ions

    NASA Astrophysics Data System (ADS)

    Zhu, Zhiyong; Sun, Youmei; Liu, Changlong; Liu, Jie; Jin, Yunfan

    2002-06-01

    Polymer films including polyethylene terephthalate (PET), polystyrene (PS) and polycarbonate (PC) were irradiated at room temperature with ions of 35 MeV/u 40Ar, 25 MeV/u 84Kr, 15.1 MeV/u 136Xe and 11.4 MeV/u 238U to fluences ranging from 9×10 9 to 5.5×10 12 ions/cm 2. The radiation-induced chemical changes of the materials were investigated by Fourier-transform infrared (FTIR) and ultraviolet/visible spectroscopies. It is found that the absorbance in the ultraviolet and visible range induced by all irradiations follows a linear relationship with fluence. The radiation-induced absorbance normalized to one particle increases slowly with increasing of electronic energy loss below about 8 keV/nm followed by a sharp increase up to about 15 keV/nm above which saturation is reached. FTIR measurements reveal that the materials suffer serious degradation through bond breaking. The absorbance of the typical infrared bands decays exponentially with increase of ion fluence and the bond-disruption cross-section shows a sigmoid variation with electronic energy loss. In PET loss of crystallinity is attributed to the configuration transformation of the ethylene glycol residue from trans into the gauche. Alkyne end groups are induced in all the materials above certain electronic energy loss threshold, which is found to be about 0.8 keV/nm for PS and 0.4 keV/nm for PC. The production cross-section of alkyne end group increases with increasing of electronic energy loss and shows saturation at high electronic energy loss values. It is concluded that not only the physical processes but also the chemical processes of the energy deposition determine the modification of polymer.

  1. Mathematical modeling of chemical composition modification and etching of polymers under the atomic oxygen influence

    NASA Astrophysics Data System (ADS)

    Chirskaia, Natalia; Novikov, Lev; Voronina, Ekaterina

    2016-07-01

    Atomic oxygen (AO) of the upper atmosphere is one of the most important space factors that can cause degradation of spacecraft surface. In our previous mathematical model the Monte Carlo method and the "large particles" approximation were used for simulating processes of polymer etching under the influence of AO [1]. The interaction of enlarged AO particles with the polymer was described in terms of probabilities of reactions such as etching of polymer and specular and diffuse scattering of the AO particles on polymer. The effects of atomic oxygen on protected polymers and microfiller containing composites were simulated. The simulation results were in quite good agreement with the results of laboratory experiments on magnetoplasmadynamic accelerator of the oxygen plasma of SINP MSU [2]. In this paper we present a new model that describes the reactions of AO interactions with polymeric materials in more detail. Reactions of formation and further emission of chemical compounds such as CO, CO _{2}, H _{2}O, etc. cause the modification of the chemical composition of the polymer and change the probabilities of its consequent interaction with the AO. The simulation results are compared with the results of previous simulation and with the results of laboratory experiments. The reasons for the differences between the results of natural experiments on spacecraft, laboratory experiments and simulations are discussed. N. Chirskaya, M. Samokhina, Computer modeling of polymer structures degradation under the atomic oxygen exposure, WDS'12 Proceedings of Contributed Papers: Part III - Physics, Matfyzpress Prague, 2012, pp. 30-35. E. Voronina, L. Novikov, V. Chernik, N. Chirskaya, K. Vernigorov, G. Bondarenko, and A. Gaidar, Mathematical and experimental simulation of impact of atomic oxygen of the earth's upper atmosphere on nanostructures and polymer composites, Inorganic Materials: Applied Research, 2012, vol. 3, no. 2, pp. 95-101.

  2. Characterisation of waste derived biochar added biocomposites: chemical and thermal modifications.

    PubMed

    Das, Oisik; Sarmah, Ajit K; Zujovic, Zoran; Bhattacharyya, Debes

    2016-04-15

    A step towards sustainability was taken by incorporating waste based pyrolysed biochar in wood and polypropylene biocomposites. The effect of biochar particles on the chemistry and thermal makeup of the composites was determined by characterising them through an array of characterisation techniques such as 3D optical profiling, X-ray diffraction, transmission electron microscopy, electron spin/nuclear magnetic resonance spectroscopy, and differential scanning calorimetry. It was observed that addition of biochar increased the presence of free radicals in the composite while also improving its thermal conductivity. Biochar particles did not interfere with the melting behaviour of polymer in the thermal regime. However, wood and biochar acted as nucleation agents consequently increasing the crystallisation temperature. The crystal structure of polypropylene was not disrupted by biochar inclusion in composite. Transmission electron microscopy images illustrated the aggregated nature of the biochar particles at higher loading levels. Nuclear magnetic resonance studies revealed the aromatic nature of biochar and the broadening of peak intensities of composites with increasing biochar levels due to its amorphous nature and presence of free radicals. Thus, this insight into the chemical and thermal modification of biochar added composites would allow effective engineering to optimise their properties while simultaneously utilising wastes. PMID:26808404

  3. Biocatalyzed Chemical Gels for Permeability Modification in Injection and Production Wells

    SciTech Connect

    Scott A. Bailey

    2000-05-31

    Low oil production and excessive water production cause many domestic oil wells to reach their economic limit when they still contain one-half to two-thirds of the original oil. Gelled polymer systems traditionally used to treat these wells are highly toxic and technically difficult to use. Non-toxic gels are needed to treat these marginal wells so that domestic producers can economically recover additional oil. The research objective was to use biocatalysts to gel non-petroleum based chemical gelants. This eliminates toxic compounds from the gel systems and simplifies the gelation mechanism. The result is an environmentally friendly gel system that is applicable to more domestic oil wells. The gelant was formulated and the biocatalyst was optimized to drive the gelation reaction. Performance of the biocatalyzed gel for permeability modification was tested successfully in coreflood experiments. This technology can be used in waterfloods to improve injection profiles, increase sweep efficiency, and increase oil production from previously bypassed zones. It can be applied in production wells to decrease coning, shut off excess water production, and increase oil production.

  4. Negative thermal expansion in functional materials: controllable thermal expansion by chemical modifications.

    PubMed

    Chen, Jun; Hu, Lei; Deng, Jinxia; Xing, Xianran

    2015-06-01

    Negative thermal expansion (NTE) is an intriguing physical property of solids, which is a consequence of a complex interplay among the lattice, phonons, and electrons. Interestingly, a large number of NTE materials have been found in various types of functional materials. In the last two decades good progress has been achieved to discover new phenomena and mechanisms of NTE. In the present review article, NTE is reviewed in functional materials of ferroelectrics, magnetics, multiferroics, superconductors, temperature-induced electron configuration change and so on. Zero thermal expansion (ZTE) of functional materials is emphasized due to the importance for practical applications. The NTE functional materials present a general physical picture to reveal a strong coupling role between physical properties and NTE. There is a general nature of NTE for both ferroelectrics and magnetics, in which NTE is determined by either ferroelectric order or magnetic one. In NTE functional materials, a multi-way to control thermal expansion can be established through the coupling roles of ferroelectricity-NTE, magnetism-NTE, change of electron configuration-NTE, open-framework-NTE, and so on. Chemical modification has been proved to be an effective method to control thermal expansion. Finally, challenges and questions are discussed for the development of NTE materials. There remains a challenge to discover a "perfect" NTE material for each specific application for chemists. The future studies on NTE functional materials will definitely promote the development of NTE materials. PMID:25864730

  5. Advances in identification and validation of protein targets of natural products without chemical modification.

    PubMed

    Chang, J; Kim, Y; Kwon, H J

    2016-05-01

    Covering: up to February 2016Identification of the target proteins of natural products is pivotal to understanding the mechanisms of action to develop natural products for use as molecular probes and potential therapeutic drugs. Affinity chromatography of immobilized natural products has been conventionally used to identify target proteins, and has yielded good results. However, this method has limitations, in that labeling or tagging for immobilization and affinity purification often result in reduced or altered activity of the natural product. New strategies have recently been developed and applied to identify the target proteins of natural products and synthetic small molecules without chemical modification of the natural product. These direct and indirect methods for target identification of label-free natural products include drug affinity responsive target stability (DARTS), stability of proteins from rates of oxidation (SPROX), cellular thermal shift assay (CETSA), thermal proteome profiling (TPP), and bioinformatics-based analysis of connectivity. This review focuses on and reports case studies of the latest advances in target protein identification methods for label-free natural products. The integration of newly developed technologies will provide new insights and highlight the value of natural products for use as biological probes and new drug candidates. PMID:26964663

  6. Topographically Engineered Large Scale Nanostructures for Plasmonic Biosensing

    NASA Astrophysics Data System (ADS)

    Xiao, Bo; Pradhan, Sangram K.; Santiago, Kevin C.; Rutherford, Gugu N.; Pradhan, Aswini K.

    2016-04-01

    We demonstrate that a nanostructured metal thin film can achieve enhanced transmission efficiency and sharp resonances and use a large-scale and high-throughput nanofabrication technique for the plasmonic structures. The fabrication technique combines the features of nanoimprint and soft lithography to topographically construct metal thin films with nanoscale patterns. Metal nanogratings developed using this method show significantly enhanced optical transmission (up to a one-order-of-magnitude enhancement) and sharp resonances with full width at half maximum (FWHM) of ~15nm in the zero-order transmission using an incoherent white light source. These nanostructures are sensitive to the surrounding environment, and the resonance can shift as the refractive index changes. We derive an analytical method using a spatial Fourier transformation to understand the enhancement phenomenon and the sensing mechanism. The use of real-time monitoring of protein-protein interactions in microfluidic cells integrated with these nanostructures is demonstrated to be effective for biosensing. The perpendicular transmission configuration and large-scale structures provide a feasible platform without sophisticated optical instrumentation to realize label-free surface plasmon resonance (SPR) sensing.

  7. THE LARGE-SCALE MAGNETIC FIELDS OF THIN ACCRETION DISKS

    SciTech Connect

    Cao Xinwu; Spruit, Hendrik C. E-mail: henk@mpa-garching.mpg.de

    2013-03-10

    Large-scale magnetic field threading an accretion disk is a key ingredient in the jet formation model. The most attractive scenario for the origin of such a large-scale field is the advection of the field by the gas in the accretion disk from the interstellar medium or a companion star. However, it is realized that outward diffusion of the accreted field is fast compared with the inward accretion velocity in a geometrically thin accretion disk if the value of the Prandtl number P{sub m} is around unity. In this work, we revisit this problem considering the angular momentum of the disk to be removed predominantly by the magnetically driven outflows. The radial velocity of the disk is significantly increased due to the presence of the outflows. Using a simplified model for the vertical disk structure, we find that even moderately weak fields can cause sufficient angular momentum loss via a magnetic wind to balance outward diffusion. There are two equilibrium points, one at low field strengths corresponding to a plasma-beta at the midplane of order several hundred, and one for strong accreted fields, {beta} {approx} 1. We surmise that the first is relevant for the accretion of weak, possibly external, fields through the outer parts of the disk, while the latter one could explain the tendency, observed in full three-dimensional numerical simulations, of strong flux bundles at the centers of disk to stay confined in spite of strong magnetororational instability turbulence surrounding them.

  8. Development of large-scale functional brain networks in children.

    PubMed

    Supekar, Kaustubh; Musen, Mark; Menon, Vinod

    2009-07-01

    The ontogeny of large-scale functional organization of the human brain is not well understood. Here we use network analysis of intrinsic functional connectivity to characterize the organization of brain networks in 23 children (ages 7-9 y) and 22 young-adults (ages 19-22 y). Comparison of network properties, including path-length, clustering-coefficient, hierarchy, and regional connectivity, revealed that although children and young-adults' brains have similar "small-world" organization at the global level, they differ significantly in hierarchical organization and interregional connectivity. We found that subcortical areas were more strongly connected with primary sensory, association, and paralimbic areas in children, whereas young-adults showed stronger cortico-cortical connectivity between paralimbic, limbic, and association areas. Further, combined analysis of functional connectivity with wiring distance measures derived from white-matter fiber tracking revealed that the development of large-scale brain networks is characterized by weakening of short-range functional connectivity and strengthening of long-range functional connectivity. Importantly, our findings show that the dynamic process of over-connectivity followed by pruning, which rewires connectivity at the neuronal level, also operates at the systems level, helping to reconfigure and rebalance subcortical and paralimbic connectivity in the developing brain. Our study demonstrates the usefulness of network analysis of brain connectivity to elucidate key principles underlying functional brain maturation, paving the way for novel studies of disrupted brain connectivity in neurodevelopmental disorders such as autism. PMID:19621066

  9. Topographically Engineered Large Scale Nanostructures for Plasmonic Biosensing.

    PubMed

    Xiao, Bo; Pradhan, Sangram K; Santiago, Kevin C; Rutherford, Gugu N; Pradhan, Aswini K

    2016-01-01

    We demonstrate that a nanostructured metal thin film can achieve enhanced transmission efficiency and sharp resonances and use a large-scale and high-throughput nanofabrication technique for the plasmonic structures. The fabrication technique combines the features of nanoimprint and soft lithography to topographically construct metal thin films with nanoscale patterns. Metal nanogratings developed using this method show significantly enhanced optical transmission (up to a one-order-of-magnitude enhancement) and sharp resonances with full width at half maximum (FWHM) of ~15nm in the zero-order transmission using an incoherent white light source. These nanostructures are sensitive to the surrounding environment, and the resonance can shift as the refractive index changes. We derive an analytical method using a spatial Fourier transformation to understand the enhancement phenomenon and the sensing mechanism. The use of real-time monitoring of protein-protein interactions in microfluidic cells integrated with these nanostructures is demonstrated to be effective for biosensing. The perpendicular transmission configuration and large-scale structures provide a feasible platform without sophisticated optical instrumentation to realize label-free surface plasmon resonance (SPR) sensing. PMID:27072067

  10. NIC-based Reduction Algorithms for Large-scale Clusters

    SciTech Connect

    Petrini, F; Moody, A T; Fernandez, J; Frachtenberg, E; Panda, D K

    2004-07-30

    Efficient algorithms for reduction operations across a group of processes are crucial for good performance in many large-scale, parallel scientific applications. While previous algorithms limit processing to the host CPU, we utilize the programmable processors and local memory available on modern cluster network interface cards (NICs) to explore a new dimension in the design of reduction algorithms. In this paper, we present the benefits and challenges, design issues and solutions, analytical models, and experimental evaluations of a family of NIC-based reduction algorithms. Performance and scalability evaluations were conducted on the ASCI Linux Cluster (ALC), a 960-node, 1920-processor machine at Lawrence Livermore National Laboratory, which uses the Quadrics QsNet interconnect. We find NIC-based reductions on modern interconnects to be more efficient than host-based implementations in both scalability and consistency. In particular, at large-scale--1812 processes--NIC-based reductions of small integer and floating-point arrays provided respective speedups of 121% and 39% over the host-based, production-level MPI implementation.

  11. Alignment of quasar polarizations with large-scale structures

    NASA Astrophysics Data System (ADS)

    Hutsemékers, D.; Braibant, L.; Pelgrims, V.; Sluse, D.

    2014-12-01

    We have measured the optical linear polarization of quasars belonging to Gpc scale quasar groups at redshift z ~ 1.3. Out of 93 quasars observed, 19 are significantly polarized. We found that quasar polarization vectors are either parallel or perpendicular to the directions of the large-scale structures to which they belong. Statistical tests indicate that the probability that this effect can be attributed to randomly oriented polarization vectors is on the order of 1%. We also found that quasars with polarization perpendicular to the host structure preferentially have large emission line widths while objects with polarization parallel to the host structure preferentially have small emission line widths. Considering that quasar polarization is usually either parallel or perpendicular to the accretion disk axis depending on the inclination with respect to the line of sight, and that broader emission lines originate from quasars seen at higher inclinations, we conclude that quasar spin axes are likely parallel to their host large-scale structures. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under program ID 092.A-0221.Table 1 is available in electronic form at http://www.aanda.org

  12. Evaluating Unmanned Aerial Platforms for Cultural Heritage Large Scale Mapping

    NASA Astrophysics Data System (ADS)

    Georgopoulos, A.; Oikonomou, C.; Adamopoulos, E.; Stathopoulou, E. K.

    2016-06-01

    When it comes to large scale mapping of limited areas especially for cultural heritage sites, things become critical. Optical and non-optical sensors are developed to such sizes and weights that can be lifted by such platforms, like e.g. LiDAR units. At the same time there is an increase in emphasis on solutions that enable users to get access to 3D information faster and cheaper. Considering the multitude of platforms, cameras and the advancement of algorithms in conjunction with the increase of available computing power this challenge should and indeed is further investigated. In this paper a short review of the UAS technologies today is attempted. A discussion follows as to their applicability and advantages, depending on their specifications, which vary immensely. The on-board cameras available are also compared and evaluated for large scale mapping. Furthermore a thorough analysis, review and experimentation with different software implementations of Structure from Motion and Multiple View Stereo algorithms, able to process such dense and mostly unordered sequence of digital images is also conducted and presented. As test data set, we use a rich optical and thermal data set from both fixed wing and multi-rotor platforms over an archaeological excavation with adverse height variations and using different cameras. Dense 3D point clouds, digital terrain models and orthophotos have been produced and evaluated for their radiometric as well as metric qualities.

  13. Exploring Cloud Computing for Large-scale Scientific Applications

    SciTech Connect

    Lin, Guang; Han, Binh; Yin, Jian; Gorton, Ian

    2013-06-27

    This paper explores cloud computing for large-scale data-intensive scientific applications. Cloud computing is attractive because it provides hardware and software resources on-demand, which relieves the burden of acquiring and maintaining a huge amount of resources that may be used only once by a scientific application. However, unlike typical commercial applications that often just requires a moderate amount of ordinary resources, large-scale scientific applications often need to process enormous amount of data in the terabyte or even petabyte range and require special high performance hardware with low latency connections to complete computation in a reasonable amount of time. To address these challenges, we build an infrastructure that can dynamically select high performance computing hardware across institutions and dynamically adapt the computation to the selected resources to achieve high performance. We have also demonstrated the effectiveness of our infrastructure by building a system biology application and an uncertainty quantification application for carbon sequestration, which can efficiently utilize data and computation resources across several institutions.

  14. The combustion behavior of large scale lithium titanate battery

    PubMed Central

    Huang, Peifeng; Wang, Qingsong; Li, Ke; Ping, Ping; Sun, Jinhua

    2015-01-01

    Safety problem is always a big obstacle for lithium battery marching to large scale application. However, the knowledge on the battery combustion behavior is limited. To investigate the combustion behavior of large scale lithium battery, three 50 Ah Li(NixCoyMnz)O2/Li4Ti5O12 batteries under different state of charge (SOC) were heated to fire. The flame size variation is depicted to analyze the combustion behavior directly. The mass loss rate, temperature and heat release rate are used to analyze the combustion behavior in reaction way deeply. Based on the phenomenon, the combustion process is divided into three basic stages, even more complicated at higher SOC with sudden smoke flow ejected. The reason is that a phase change occurs in Li(NixCoyMnz)O2 material from layer structure to spinel structure. The critical temperatures of ignition are at 112–121°C on anode tab and 139 to 147°C on upper surface for all cells. But the heating time and combustion time become shorter with the ascending of SOC. The results indicate that the battery fire hazard increases with the SOC. It is analyzed that the internal short and the Li+ distribution are the main causes that lead to the difference. PMID:25586064

  15. Large scale reconstruction of the solar coronal magnetic field

    NASA Astrophysics Data System (ADS)

    Amari, T.; Aly, J.-J.; Chopin, P.; Canou, A.; Mikic, Z.

    2014-10-01

    It is now becoming necessary to access the global magnetic structure of the solar low corona at a large scale in order to understand its physics and more particularly the conditions of energization of the magnetic fields and the multiple connections between distant active regions (ARs) which may trigger eruptive events in an almost coordinated way. Various vector magnetographs, either on board spacecraft or ground-based, currently allow to obtain vector synoptic maps, composite magnetograms made of multiple interactive ARs, and full disk magnetograms. We present a method recently developed for reconstructing the global solar coronal magnetic field as a nonlinear force-free magnetic field in spherical geometry, generalizing our previous results in Cartesian geometry. This method is implemented in the new code XTRAPOLS, which thus appears as an extension of our active region scale code XTRAPOL. We apply our method by performing a reconstruction at a specific time for which we dispose of a set of composite data constituted of a vector magnetogram provided by SDO/HMI, embedded in a larger full disk vector magnetogram provided by the same instrument, finally embedded in a synoptic map provided by SOLIS. It turns out to be possible to access the large scale structure of the corona and its energetic contents, and also the AR scale, at which we recover the presence of a twisted flux rope in equilibrium.

  16. High Speed Networking and Large-scale Simulation in Geodynamics

    NASA Technical Reports Server (NTRS)

    Kuang, Weijia; Gary, Patrick; Seablom, Michael; Truszkowski, Walt; Odubiyi, Jide; Jiang, Weiyuan; Liu, Dong

    2004-01-01

    Large-scale numerical simulation has been one of the most important approaches for understanding global geodynamical processes. In this approach, peta-scale floating point operations (pflops) are often required to carry out a single physically-meaningful numerical experiment. For example, to model convective flow in the Earth's core and generation of the geomagnetic field (geodynamo), simulation for one magnetic free-decay time (approximately 15000 years) with a modest resolution of 150 in three spatial dimensions would require approximately 0.2 pflops. If such a numerical model is used to predict geomagnetic secular variation over decades and longer, with e.g. an ensemble Kalman filter assimilation approach, approximately 30 (and perhaps more) independent simulations of similar scales would be needed for one data assimilation analysis. Obviously, such a simulation would require an enormous computing resource that exceeds the capacity of a single facility currently available at our disposal. One solution is to utilize a very fast network (e.g. 10Gb optical networks) and available middleware (e.g. Globus Toolkit) to allocate available but often heterogeneous resources for such large-scale computing efforts. At NASA GSFC, we are experimenting with such an approach by networking several clusters for geomagnetic data assimilation research. We shall present our initial testing results in the meeting.

  17. Large-scale anisotropy in stably stratified rotating flows

    SciTech Connect

    Marino, R.; Mininni, P. D.; Rosenberg, D. L.; Pouquet, A.

    2014-08-28

    We present results from direct numerical simulations of the Boussinesq equations in the presence of rotation and/or stratification, both in the vertical direction. The runs are forced isotropically and randomly at small scales and have spatial resolutions of up to $1024^3$ grid points and Reynolds numbers of $\\approx 1000$. We first show that solutions with negative energy flux and inverse cascades develop in rotating turbulence, whether or not stratification is present. However, the purely stratified case is characterized instead by an early-time, highly anisotropic transfer to large scales with almost zero net isotropic energy flux. This is consistent with previous studies that observed the development of vertically sheared horizontal winds, although only at substantially later times. However, and unlike previous works, when sufficient scale separation is allowed between the forcing scale and the domain size, the total energy displays a perpendicular (horizontal) spectrum with power law behavior compatible with $\\sim k_\\perp^{-5/3}$, including in the absence of rotation. In this latter purely stratified case, such a spectrum is the result of a direct cascade of the energy contained in the large-scale horizontal wind, as is evidenced by a strong positive flux of energy in the parallel direction at all scales including the largest resolved scales.

  18. Online education in a large scale rehabilitation institution.

    PubMed

    Mazzoleni, M Cristina; Rognoni, Carla; Pagani, Marco; Imbriani, Marcello

    2012-01-01

    Large scale multiple venue institutions face problems when delivering educations to their healthcare staff. The present study is aimed at evaluating the feasibility of relying on e-learning for at least part of the training of the Salvatore Maugeri Foundation healthcare staff. The paper reports the results of the delivery of e-learning courses to the personnel during a span of time of 7 months in order to assess the attitude to online courses attendance, the proportion between administered online education and administered traditional education, the economic sustainability of the online education delivery process. 37% of the total healthcare staff have attended online courses and 46% of nurses have proved to be the very active. The ratio between total number of credits and total number of courses for online and traditional education are respectively 18268/5 and 20354/96. These results point out that eLearning is not at all a niche tool used (or usable) by a limited number of people. Economic sustainability, assessed via personnel work hour saving, has been demonstrated. When distance learning is appropriate, online education is an effective, sustainable, well accepted mean to support and promote healthcare staff's education in a large scale institution. PMID:22491113

  19. Systematic renormalization of the effective theory of Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Akbar Abolhasani, Ali; Mirbabayi, Mehrdad; Pajer, Enrico

    2016-05-01

    A perturbative description of Large Scale Structure is a cornerstone of our understanding of the observed distribution of matter in the universe. Renormalization is an essential and defining step to make this description physical and predictive. Here we introduce a systematic renormalization procedure, which neatly associates counterterms to the UV-sensitive diagrams order by order, as it is commonly done in quantum field theory. As a concrete example, we renormalize the one-loop power spectrum and bispectrum of both density and velocity. In addition, we present a series of results that are valid to all orders in perturbation theory. First, we show that while systematic renormalization requires temporally non-local counterterms, in practice one can use an equivalent basis made of local operators. We give an explicit prescription to generate all counterterms allowed by the symmetries. Second, we present a formal proof of the well-known general argument that the contribution of short distance perturbations to large scale density contrast δ and momentum density π(k) scale as k2 and k, respectively. Third, we demonstrate that the common practice of introducing counterterms only in the Euler equation when one is interested in correlators of δ is indeed valid to all orders.

  20. Semantic overlay network for large-scale spatial information indexing

    NASA Astrophysics Data System (ADS)

    Zou, Zhiqiang; Wang, Yue; Cao, Kai; Qu, Tianshan; Wang, Zhongmin

    2013-08-01

    The increased demand for online services of spatial information poses new challenges to the combined filed of Computer Science and Geographic Information Science. Amongst others, these include fast indexing of spatial data in distributed networks. In this paper we propose a novel semantic overlay network for large-scale multi-dimensional spatial information indexing, called SON_LSII, which has a hybrid structure integrating a semantic quad-tree and Chord ring. The SON_LSII is a small world overlay network that achieves a very competitive trade-off between indexing efficiency and maintenance overhead. To create SON_LSII, we use an effective semantic clustering strategy that considers two aspects, i.e., the semantic of spatial information that peer holds in overlay network and physical network performances. Based on SON_LSII, a mapping method is used to reduce the multi-dimensional features into a single dimension and an efficient indexing algorithm is presented to support complex range queries of the spatial information with a massive number of concurrent users. The results from extensive experiments demonstrate that SON_LSII is superior to existing overlay networks in various respects, including scalability, maintenance, rate of indexing hits, indexing logical hops, and adaptability. Thus, the proposed SON_LSII can be used for large-scale spatial information indexing.

  1. The large-scale morphology of IRAS galaxies

    NASA Technical Reports Server (NTRS)

    Babul, Arif; Starkman, Glenn D.; Strauss, Michael A.

    1993-01-01

    At present, visual inspection is the only method for comparing the large-scale morphologies in the distribution of galaxies to those in model universes generated by N-body simulations. To remedy the situation, we have developed a set of three structure functions (S1, S2, S3) that quantify the degree of large-scale prolateness, oblateness, and sphericity/uniformity of a 3-D particle distribution and have applied them to a volume-limited (less than = 4000 km/s) sample of 699 IRAS galaxies with f sub 60 greater than 1.2 Jy. To determine the structure functions, we randomly select 500 galaxies as origins of spherical windows of radius R sub w, locate the centroid of the galaxies in the window (assuming all galaxies have equal mass) and then, compute the principal moments of inertia (I sub 1, I sub 2, I sub 3) about the centroid. Each S sub i is a function of (I sub 2)/(I sub 1) and (I sub 3)/I sub 1). S1, S2, and S3 tend to unity for highly prolate, oblate, and uniform distributions, respectively and tend to zero otherwise. The resulting 500 values of S sub i at each scale R sub w are used to construct a histogram.

  2. Simulating the large-scale structure of HI intensity maps

    NASA Astrophysics Data System (ADS)

    Seehars, Sebastian; Paranjape, Aseem; Witzemann, Amadeus; Refregier, Alexandre; Amara, Adam; Akeret, Joel

    2016-03-01

    Intensity mapping of neutral hydrogen (HI) is a promising observational probe of cosmology and large-scale structure. We present wide field simulations of HI intensity maps based on N-body simulations of a 2.6 Gpc / h box with 20483 particles (particle mass 1.6 × 1011 Msolar / h). Using a conditional mass function to populate the simulated dark matter density field with halos below the mass resolution of the simulation (108 Msolar / h < Mhalo < 1013 Msolar / h), we assign HI to those halos according to a phenomenological halo to HI mass relation. The simulations span a redshift range of 0.35 lesssim z lesssim 0.9 in redshift bins of width Δ z ≈ 0.05 and cover a quarter of the sky at an angular resolution of about 7'. We use the simulated intensity maps to study the impact of non-linear effects and redshift space distortions on the angular clustering of HI. Focusing on the autocorrelations of the maps, we apply and compare several estimators for the angular power spectrum and its covariance. We verify that these estimators agree with analytic predictions on large scales and study the validity of approximations based on Gaussian random fields, particularly in the context of the covariance. We discuss how our results and the simulated maps can be useful for planning and interpreting future HI intensity mapping surveys.

  3. IP over optical multicasting for large-scale video delivery

    NASA Astrophysics Data System (ADS)

    Jin, Yaohui; Hu, Weisheng; Sun, Weiqiang; Guo, Wei

    2007-11-01

    In the IPTV systems, multicasting will play a crucial role in the delivery of high-quality video services, which can significantly improve bandwidth efficiency. However, the scalability and the signal quality of current IPTV can barely compete with the existing broadcast digital TV systems since it is difficult to implement large-scale multicasting with end-to-end guaranteed quality of service (QoS) in packet-switched IP network. China 3TNet project aimed to build a high performance broadband trial network to support large-scale concurrent streaming media and interactive multimedia services. The innovative idea of 3TNet is that an automatic switched optical networks (ASON) with the capability of dynamic point-to-multipoint (P2MP) connections replaces the conventional IP multicasting network in the transport core, while the edge remains an IP multicasting network. In this paper, we will introduce the network architecture and discuss challenges in such IP over Optical multicasting for video delivery.

  4. Maestro: an orchestration framework for large-scale WSN simulations.

    PubMed

    Riliskis, Laurynas; Osipov, Evgeny

    2014-01-01

    Contemporary wireless sensor networks (WSNs) have evolved into large and complex systems and are one of the main technologies used in cyber-physical systems and the Internet of Things. Extensive research on WSNs has led to the development of diverse solutions at all levels of software architecture, including protocol stacks for communications. This multitude of solutions is due to the limited computational power and restrictions on energy consumption that must be accounted for when designing typical WSN systems. It is therefore challenging to develop, test and validate even small WSN applications, and this process can easily consume significant resources. Simulations are inexpensive tools for testing, verifying and generally experimenting with new technologies in a repeatable fashion. Consequently, as the size of the systems to be tested increases, so does the need for large-scale simulations. This article describes a tool called Maestro for the automation of large-scale simulation and investigates the feasibility of using cloud computing facilities for such task. Using tools that are built into Maestro, we demonstrate a feasible approach for benchmarking cloud infrastructure in order to identify cloud Virtual Machine (VM)instances that provide an optimal balance of performance and cost for a given simulation. PMID:24647123

  5. Simulating subsurface heterogeneity improves large-scale water resources predictions

    NASA Astrophysics Data System (ADS)

    Hartmann, A. J.; Gleeson, T.; Wagener, T.; Wada, Y.

    2014-12-01

    Heterogeneity is abundant everywhere across the hydrosphere. It exists in the soil, the vadose zone and the groundwater. In large-scale hydrological models, subsurface heterogeneity is usually not considered. Instead average or representative values are chosen for each of the simulated grid cells, not incorporating any sub-grid variability. This may lead to unreliable predictions when the models are used for assessing future water resources availability, floods or droughts, or when they are used for recommendations for more sustainable water management. In this study we use a novel, large-scale model that takes into account sub-grid heterogeneity for the simulation of groundwater recharge by using statistical distribution functions. We choose all regions over Europe that are comprised by carbonate rock (~35% of the total area) because the well understood dissolvability of carbonate rocks (karstification) allows for assessing the strength of subsurface heterogeneity. Applying the model with historic data and future climate projections we show that subsurface heterogeneity lowers the vulnerability of groundwater recharge on hydro-climatic extremes and future changes of climate. Comparing our simulations with the PCR-GLOBWB model we can quantify the deviations of simulations for different sub-regions in Europe.

  6. Evaluating large scale orthophotos derived from high resolution satellite imagery

    NASA Astrophysics Data System (ADS)

    Ioannou, Maria Teresa; Georgopoulos, Andreas

    2013-08-01

    For the purposes of a research project, for the compilation of the archaeological and environmental digital map of the island of Antiparos, the production of updated large scale orthophotos was required. Hence suitable stereoscopic high resolution satellite imagery was acquired. Two Geoeye-1 stereopairs were enough to cover this small island of the Cyclades complex in the central Aegean. For the orientation of the two stereopairs numerous ground control points were determined using GPS observations. Some of them would also serve as check points. The images were processed using commercial stereophotogrammetric software suitable to process satellite stereoscopic imagery. The results of the orientations are evaluated and the digital terrain model was produced using automated and manual procedures. The DTM was checked both internally and externally with comparison to other available DTMs. In this paper the procedures for producing the desired orthophotography are critically presented and the final result is compared and evaluated for its accuracy, completeness and efficiency. The final product is also compared against the orthophotography produced by Ktimatologio S.A. using aerial images in 2007. The orthophotography produced has been evaluated metrically using the available check points, while qualitative evaluation has also been performed. The results are presented and a critical approach for the usability of satellite imagery for the production of large scale orthophotos is attempted.

  7. Large-Scale Low-Boom Inlet Test Overview

    NASA Technical Reports Server (NTRS)

    Hirt, Stefanie

    2011-01-01

    This presentation provides a high level overview of the Large-Scale Low-Boom Inlet Test and was presented at the Fundamental Aeronautics 2011 Technical Conference. In October 2010 a low-boom supersonic inlet concept with flow control was tested in the 8'x6' supersonic wind tunnel at NASA Glenn Research Center (GRC). The primary objectives of the test were to evaluate the inlet stability and operability of a large-scale low-boom supersonic inlet concept by acquiring performance and flowfield validation data, as well as evaluate simple, passive, bleedless inlet boundary layer control options. During this effort two models were tested: a dual stream inlet intended to model potential flight hardware and a single stream design to study a zero-degree external cowl angle and to permit surface flow visualization of the vortex generator flow control on the internal centerbody surface. The tests were conducted by a team of researchers from NASA GRC, Gulfstream Aerospace Corporation, University of Illinois at Urbana-Champaign, and the University of Virginia

  8. New methods for large scale local and global optimization

    NASA Astrophysics Data System (ADS)

    Byrd, Richard; Schnabel, Robert

    1994-07-01

    We have pursued all three topics described in the proposal during this research period. A large amount of effort has gone into the development of large scale global optimization methods for molecular configuration problems. We have developed new general purpose methods that combine efficient stochastic global optimization techniques with several new, more deterministic techniques that account for most of the computational effort, and the success, of the methods. We have applied our methods to Lennard-Jones problems with up to 75 atoms, to water clusters with up to 31, molecules, and polymers with up to 58 amino acids. The results appear to be the best so far by general purpose optimization methods, and appear to be leading to some interesting chemistry issues. Our research on the second topic, tensor methods, has addressed several areas. We have designed and implemented tensor methods for large sparse systems of nonlinear equations and nonlinear least squares, and have obtained excellent test results on a wide range of problems. We have also developed new tensor methods for nonlinearly constrained optimization problem, and have obtained promising theoretical and preliminary computational results. Finally, on the third topic, limited memory methods for large scale optimization, we have developed and implemented new, extremely efficient limited memory methods for bound constrained problems, and new limited memory trust regions methods, both using our-recently developed compact representations for quasi-Newton matrices. Computational test results for both methods are promising.

  9. Maestro: An Orchestration Framework for Large-Scale WSN Simulations

    PubMed Central

    Riliskis, Laurynas; Osipov, Evgeny

    2014-01-01

    Contemporary wireless sensor networks (WSNs) have evolved into large and complex systems and are one of the main technologies used in cyber-physical systems and the Internet of Things. Extensive research on WSNs has led to the development of diverse solutions at all levels of software architecture, including protocol stacks for communications. This multitude of solutions is due to the limited computational power and restrictions on energy consumption that must be accounted for when designing typical WSN systems. It is therefore challenging to develop, test and validate even small WSN applications, and this process can easily consume significant resources. Simulations are inexpensive tools for testing, verifying and generally experimenting with new technologies in a repeatable fashion. Consequently, as the size of the systems to be tested increases, so does the need for large-scale simulations. This article describes a tool called Maestro for the automation of large-scale simulation and investigates the feasibility of using cloud computing facilities for such task. Using tools that are built into Maestro, we demonstrate a feasible approach for benchmarking cloud infrastructure in order to identify cloud Virtual Machine (VM)instances that provide an optimal balance of performance and cost for a given simulation. PMID:24647123

  10. Power suppression at large scales in string inflation

    SciTech Connect

    Cicoli, Michele; Downes, Sean; Dutta, Bhaskar E-mail: sddownes@physics.tamu.edu

    2013-12-01

    We study a possible origin of the anomalous suppression of the power spectrum at large angular scales in the cosmic microwave background within the framework of explicit string inflationary models where inflation is driven by a closed string modulus parameterizing the size of the extra dimensions. In this class of models the apparent power loss at large scales is caused by the background dynamics which involves a sharp transition from a fast-roll power law phase to a period of Starobinsky-like slow-roll inflation. An interesting feature of this class of string inflationary models is that the number of e-foldings of inflation is inversely proportional to the string coupling to a positive power. Therefore once the string coupling is tuned to small values in order to trust string perturbation theory, enough e-foldings of inflation are automatically obtained without the need of extra tuning. Moreover, in the less tuned cases the sharp transition responsible for the power loss takes place just before the last 50-60 e-foldings of inflation. We illustrate these general claims in the case of Fibre Inflation where we study the strength of this transition in terms of the attractor dynamics, finding that it induces a pivot from a blue to a redshifted power spectrum which can explain the apparent large scale power loss. We compute the effects of this pivot for example cases and demonstrate how magnitude and duration of this effect depend on model parameters.

  11. Detecting differential protein expression in large-scale population proteomics

    SciTech Connect

    Ryu, Soyoung; Qian, Weijun; Camp, David G.; Smith, Richard D.; Tompkins, Ronald G.; Davis, Ronald W.; Xiao, Wenzhong

    2014-06-17

    Mass spectrometry-based high-throughput quantitative proteomics shows great potential in clinical biomarker studies, identifying and quantifying thousands of proteins in biological samples. However, methods are needed to appropriately handle issues/challenges unique to mass spectrometry data in order to detect as many biomarker proteins as possible. One issue is that different mass spectrometry experiments generate quite different total numbers of quantified peptides, which can result in more missing peptide abundances in an experiment with a smaller total number of quantified peptides. Another issue is that the quantification of peptides is sometimes absent, especially for less abundant peptides and such missing values contain the information about the peptide abundance. Here, we propose a Significance Analysis for Large-scale Proteomics Studies (SALPS) that handles missing peptide intensity values caused by the two mechanisms mentioned above. Our model has a robust performance in both simulated data and proteomics data from a large clinical study. Because varying patients’ sample qualities and deviating instrument performances are not avoidable for clinical studies performed over the course of several years, we believe that our approach will be useful to analyze large-scale clinical proteomics data.

  12. Large-scale anisotropy in stably stratified rotating flows

    DOE PAGESBeta

    Marino, R.; Mininni, P. D.; Rosenberg, D. L.; Pouquet, A.

    2014-08-28

    We present results from direct numerical simulations of the Boussinesq equations in the presence of rotation and/or stratification, both in the vertical direction. The runs are forced isotropically and randomly at small scales and have spatial resolutions of up tomore » $1024^3$ grid points and Reynolds numbers of $$\\approx 1000$$. We first show that solutions with negative energy flux and inverse cascades develop in rotating turbulence, whether or not stratification is present. However, the purely stratified case is characterized instead by an early-time, highly anisotropic transfer to large scales with almost zero net isotropic energy flux. This is consistent with previous studies that observed the development of vertically sheared horizontal winds, although only at substantially later times. However, and unlike previous works, when sufficient scale separation is allowed between the forcing scale and the domain size, the total energy displays a perpendicular (horizontal) spectrum with power law behavior compatible with $$\\sim k_\\perp^{-5/3}$$, including in the absence of rotation. In this latter purely stratified case, such a spectrum is the result of a direct cascade of the energy contained in the large-scale horizontal wind, as is evidenced by a strong positive flux of energy in the parallel direction at all scales including the largest resolved scales.« less

  13. Ecohydrological modeling for large-scale environmental impact assessment.

    PubMed

    Woznicki, Sean A; Nejadhashemi, A Pouyan; Abouali, Mohammad; Herman, Matthew R; Esfahanian, Elaheh; Hamaamin, Yaseen A; Zhang, Zhen

    2016-02-01

    Ecohydrological models are frequently used to assess the biological integrity of unsampled streams. These models vary in complexity and scale, and their utility depends on their final application. Tradeoffs are usually made in model scale, where large-scale models are useful for determining broad impacts of human activities on biological conditions, and regional-scale (e.g. watershed or ecoregion) models provide stakeholders greater detail at the individual stream reach level. Given these tradeoffs, the objective of this study was to develop large-scale stream health models with reach level accuracy similar to regional-scale models thereby allowing for impacts assessments and improved decision-making capabilities. To accomplish this, four measures of biological integrity (Ephemeroptera, Plecoptera, and Trichoptera taxa (EPT), Family Index of Biotic Integrity (FIBI), Hilsenhoff Biotic Index (HBI), and fish Index of Biotic Integrity (IBI)) were modeled based on four thermal classes (cold, cold-transitional, cool, and warm) of streams that broadly dictate the distribution of aquatic biota in Michigan. The Soil and Water Assessment Tool (SWAT) was used to simulate streamflow and water quality in seven watersheds and the Hydrologic Index Tool was used to calculate 171 ecologically relevant flow regime variables. Unique variables were selected for each thermal class using a Bayesian variable selection method. The variables were then used in development of adaptive neuro-fuzzy inference systems (ANFIS) models of EPT, FIBI, HBI, and IBI. ANFIS model accuracy improved when accounting for stream thermal class rather than developing a global model. PMID:26595397

  14. Large scale CMB anomalies from thawing cosmic strings

    NASA Astrophysics Data System (ADS)

    Ringeval, Christophe; Yamauchi, Daisuke; Yokoyama, Jun'ichi; Bouchet, François R.

    2016-02-01

    Cosmic strings formed during inflation are expected to be either diluted over super-Hubble distances, i.e., invisible today, or to have crossed our past light cone very recently. We discuss the latter situation in which a few strings imprint their signature in the Cosmic Microwave Background (CMB) Anisotropies after recombination. Being almost frozen in the Hubble flow, these strings are quasi static and evade almost all of the previously derived constraints on their tension while being able to source large scale anisotropies in the CMB sky. Using a local variance estimator on thousand of numerically simulated Nambu-Goto all sky maps, we compute the expected signal and show that it can mimic a dipole modulation at large angular scales while being negligible at small angles. Interestingly, such a scenario generically produces one cold spot from the thawing of a cosmic string loop. Mixed with anisotropies of inflationary origin, we find that a few strings of tension GU = Script O(1) × 10-6 match the amplitude of the dipole modulation reported in the Planck satellite measurements and could be at the origin of other large scale anomalies.

  15. The combustion behavior of large scale lithium titanate battery

    NASA Astrophysics Data System (ADS)

    Huang, Peifeng; Wang, Qingsong; Li, Ke; Ping, Ping; Sun, Jinhua

    2015-01-01

    Safety problem is always a big obstacle for lithium battery marching to large scale application. However, the knowledge on the battery combustion behavior is limited. To investigate the combustion behavior of large scale lithium battery, three 50 Ah Li(NixCoyMnz)O2/Li4Ti5O12 batteries under different state of charge (SOC) were heated to fire. The flame size variation is depicted to analyze the combustion behavior directly. The mass loss rate, temperature and heat release rate are used to analyze the combustion behavior in reaction way deeply. Based on the phenomenon, the combustion process is divided into three basic stages, even more complicated at higher SOC with sudden smoke flow ejected. The reason is that a phase change occurs in Li(NixCoyMnz)O2 material from layer structure to spinel structure. The critical temperatures of ignition are at 112-121°C on anode tab and 139 to 147°C on upper surface for all cells. But the heating time and combustion time become shorter with the ascending of SOC. The results indicate that the battery fire hazard increases with the SOC. It is analyzed that the internal short and the Li+ distribution are the main causes that lead to the difference.

  16. Large-scale magnetic fields in magnetohydrodynamic turbulence.

    PubMed

    Alexakis, Alexandros

    2013-02-22

    High Reynolds number magnetohydrodynamic turbulence in the presence of zero-flux large-scale magnetic fields is investigated as a function of the magnetic field strength. For a variety of flow configurations, the energy dissipation rate [symbol: see text] follows the scaling [Symbol: see text] proportional U(rms)(3)/ℓ even when the large-scale magnetic field energy is twenty times larger than the kinetic energy. A further increase of the magnetic energy showed a transition to the [Symbol: see text] proportional U(rms)(2) B(rms)/ℓ scaling implying that magnetic shear becomes more efficient at this point at cascading the energy than the velocity fluctuations. Strongly helical configurations form nonturbulent helicity condensates that deviate from these scalings. Weak turbulence scaling was absent from the investigation. Finally, the magnetic energy spectra support the Kolmogorov spectrum k(-5/3) while kinetic energy spectra are closer to the Iroshnikov-Kraichnan spectrum k(-3/2) as observed in the solar wind. PMID:23473153

  17. Exact-Differential Large-Scale Traffic Simulation

    SciTech Connect

    Hanai, Masatoshi; Suzumura, Toyotaro; Theodoropoulos, Georgios; Perumalla, Kalyan S

    2015-01-01

    Analyzing large-scale traffics by simulation needs repeating execution many times with various patterns of scenarios or parameters. Such repeating execution brings about big redundancy because the change from a prior scenario to a later scenario is very minor in most cases, for example, blocking only one of roads or changing the speed limit of several roads. In this paper, we propose a new redundancy reduction technique, called exact-differential simulation, which enables to simulate only changing scenarios in later execution while keeping exactly same results as in the case of whole simulation. The paper consists of two main efforts: (i) a key idea and algorithm of the exact-differential simulation, (ii) a method to build large-scale traffic simulation on the top of the exact-differential simulation. In experiments of Tokyo traffic simulation, the exact-differential simulation shows 7.26 times as much elapsed time improvement in average and 2.26 times improvement even in the worst case as the whole simulation.

  18. Large-scale mapping of mutations affecting zebrafish development

    PubMed Central

    Geisler, Robert; Rauch, Gerd-Jörg; Geiger-Rudolph, Silke; Albrecht, Andrea; van Bebber, Frauke; Berger, Andrea; Busch-Nentwich, Elisabeth; Dahm, Ralf; Dekens, Marcus PS; Dooley, Christopher; Elli, Alexandra F; Gehring, Ines; Geiger, Horst; Geisler, Maria; Glaser, Stefanie; Holley, Scott; Huber, Matthias; Kerr, Andy; Kirn, Anette; Knirsch, Martina; Konantz, Martina; Küchler, Axel M; Maderspacher, Florian; Neuhauss, Stephan C; Nicolson, Teresa; Ober, Elke A; Praeg, Elke; Ray, Russell; Rentzsch, Brit; Rick, Jens M; Rief, Eva; Schauerte, Heike E; Schepp, Carsten P; Schönberger, Ulrike; Schonthaler, Helia B; Seiler, Christoph; Sidi, Samuel; Söllner, Christian; Wehner, Anja; Weiler, Christian; Nüsslein-Volhard, Christiane

    2007-01-01

    Background Large-scale mutagenesis screens in the zebrafish employing the mutagen ENU have isolated several hundred mutant loci that represent putative developmental control genes. In order to realize the potential of such screens, systematic genetic mapping of the mutations is necessary. Here we report on a large-scale effort to map the mutations generated in mutagenesis screening at the Max Planck Institute for Developmental Biology by genome scanning with microsatellite markers. Results We have selected a set of microsatellite markers and developed methods and scoring criteria suitable for efficient, high-throughput genome scanning. We have used these methods to successfully obtain a rough map position for 319 mutant loci from the Tübingen I mutagenesis screen and subsequent screening of the mutant collection. For 277 of these the corresponding gene is not yet identified. Mapping was successful for 80 % of the tested loci. By comparing 21 mutation and gene positions of cloned mutations we have validated the correctness of our linkage group assignments and estimated the standard error of our map positions to be approximately 6 cM. Conclusion By obtaining rough map positions for over 300 zebrafish loci with developmental phenotypes, we have generated a dataset that will be useful not only for cloning of the affected genes, but also to suggest allelism of mutations with similar phenotypes that will be identified in future screens. Furthermore this work validates the usefulness of our methodology for rapid, systematic and inexpensive microsatellite mapping of zebrafish mutations. PMID:17212827

  19. The effective field theory of cosmological large scale structures

    SciTech Connect

    Carrasco, John Joseph M.; Hertzberg, Mark P.; Senatore, Leonardo

    2012-09-20

    Large scale structure surveys will likely become the next leading cosmological probe. In our universe, matter perturbations are large on short distances and small at long scales, i.e. strongly coupled in the UV and weakly coupled in the IR. To make precise analytical predictions on large scales, we develop an effective field theory formulated in terms of an IR effective fluid characterized by several parameters, such as speed of sound and viscosity. These parameters, determined by the UV physics described by the Boltzmann equation, are measured from N-body simulations. We find that the speed of sound of the effective fluid is c2s ≈ 10–6c2 and that the viscosity contributions are of the same order. The fluid describes all the relevant physics at long scales k and permits a manifestly convergent perturbative expansion in the size of the matter perturbations δ(k) for all the observables. As an example, we calculate the correction to the power spectrum at order δ(k)4. As a result, the predictions of the effective field theory are found to be in much better agreement with observation than standard cosmological perturbation theory, already reaching percent precision at this order up to a relatively short scale k ≃ 0.24h Mpc–1.

  20. Halo detection via large-scale Bayesian inference

    NASA Astrophysics Data System (ADS)

    Merson, Alexander I.; Jasche, Jens; Abdalla, Filipe B.; Lahav, Ofer; Wandelt, Benjamin; Jones, D. Heath; Colless, Matthew

    2016-08-01

    We present a proof-of-concept of a novel and fully Bayesian methodology designed to detect haloes of different masses in cosmological observations subject to noise and systematic uncertainties. Our methodology combines the previously published Bayesian large-scale structure inference algorithm, HAmiltonian Density Estimation and Sampling algorithm (HADES), and a Bayesian chain rule (the Blackwell-Rao estimator), which we use to connect the inferred density field to the properties of dark matter haloes. To demonstrate the capability of our approach, we construct a realistic galaxy mock catalogue emulating the wide-area 6-degree Field Galaxy Survey, which has a median redshift of approximately 0.05. Application of HADES to the catalogue provides us with accurately inferred three-dimensional density fields and corresponding quantification of uncertainties inherent to any cosmological observation. We then use a cosmological simulation to relate the amplitude of the density field to the probability of detecting a halo with mass above a specified threshold. With this information, we can sum over the HADES density field realisations to construct maps of detection probabilities and demonstrate the validity of this approach within our mock scenario. We find that the probability of successful detection of haloes in the mock catalogue increases as a function of the signal to noise of the local galaxy observations. Our proposed methodology can easily be extended to account for more complex scientific questions and is a promising novel tool to analyse the cosmic large-scale structure in observations.