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Sample records for latvian gdp vary

  1. Applications of the Time-Varying Multi-Hazard Index to Armed Conflicts and GDP Growth Rate

    NASA Astrophysics Data System (ADS)

    Isanuk, M.; Skorik, A.; Lerner-Lam, A.

    2004-12-01

    The time-varying Multi-Hazard Index has many potential applications for comparisons against quantitative measures of sustainable development. We have compared the time-varying severity of multiple natural hazards against time-varying socio-economic data for selected countries. Our analysis compares Gross Domestic Product (GDP) growth and armed conflict occurrence against multiple hazard severity as measured by an empirical time-varying multiple hazard index. The purpose of these analyses is to establish and characterize correlations between the Multi-Hazard Index and trends in GDP and conflicts over the past 25 years. To analyze the relationship between natural hazards and armed conflicts, the Multi-Hazard Index was correlated against the number of conflicts at each intensity level for individual countries. A preliminary analysis was performed studying the apparent relationship as well as the possible existence of time lags. In a similar although more quantitative analysis, the GDP data was correlated against the Multi-Hazard Index for a particular country at different time lags. Analysis involving the conflict datasets yielded varying results from country to country. Colombia shows the strongest correlation, with all positive values of the Multi-Hazard Index followed by an escalation in conflict intensity. The results for other countries are more difficult to interpret as certain years show increases in the number of conflicts at one intensity level and a decrease for other intensity levels. Some issues that need to be addressed include the coding of the intensity for the conflict data, the dating for both conflicts and hazards, and the use of national boundaries as geographic extents. The degree of correlation between GDP growth and the Multi-Hazard Index varies from country to country as well. Our calculations for Honduras show an extremely high correlation, for example, implying a strong economic sensitivity to natural hazards, whereas for China no significant

  2. Latvian Education Informatization System LIIS

    ERIC Educational Resources Information Center

    Bicevskis, Janis; Andzans, Agnis; Ikaunieks, Evalds; Medvedis, Inga; Straujums, Uldis; Vezis, Viesturs

    2004-01-01

    The Latvian Education Informatization System LIIS project covers the whole information grid: education content, management, information services, infrastructure and user training at several levels--schools, school boards and Ministry of Education and Science. Informatization is the maintained process of creating the technical, economical and…

  3. Paranormal beliefs of Latvian college students: a Latvian version of the revised paranormal belief scale.

    PubMed

    Utinans, A; Ancane, G; Tobacyk, J J; Boyraz, G; Livingston, M M; Tobacyk, J S

    2015-02-01

    A Latvian version of the Revised Paranormal Belief Scale (RPBS) was completed by 229 Latvian university students. Exploratory and confirmatory factor analyses revealed six relatively independent factors labeled Magical Abilities, Psychokinesis, Traditional Religious Belief, Superstition, Spirit Travel, and Extraordinary Life Forms. Based on the motivational-control model, it was hypothesized that the societal stressors affecting Latvian society during the last 50 yr. have led to a reduced sense of personal control which, in turn, has resulted in increased endorsement of paranormal beliefs to re-establish a sense of control. The motivational-control hypothesis was not supported. Results indicated that (except for Traditional Religious Belief in women), the majority of these students were disbelievers in paranormal phenomena. As hypothesized, Latvian women reported significantly greater paranormal belief than men. PMID:25621674

  4. Wave Energy Potential in the Latvian EEZ

    NASA Astrophysics Data System (ADS)

    Beriņš, J.; Beriņš, J.; Kalnačs, J.; Kalnačs, A.

    2016-06-01

    The present article deals with one of the alternative forms of energy - sea wave energy potential in the Latvian Exclusice Economic Zone (EEZ). Results have been achieved using a new method - VEVPP. Calculations have been performed using the data on wave parameters over the past five years (2010-2014). We have also considered wave energy potential in the Gulf of Riga. The conclusions have been drawn on the recommended methodology for the sea wave potential and power calculations for wave-power plant pre-design stage.

  5. Breaking Historical Silence through Cross-Cultural Collaboration: Latvian Curriculum Writers and United States Holocaust Memorial Museum Fellows

    ERIC Educational Resources Information Center

    Hamot, Gregory E.; Lindquist, David H.; Misco, Thomas J.

    2007-01-01

    In response to the need for Holocaust curricula in Latvia, Latvians and Americans worked collaboratively to overcome the historical silence surrounding this event. During their project, Latvian curriculum writers worked with teachers and scholars at the United States Holocaust Memorial Museum. This descriptive analysis of the Latvians' experience…

  6. Latvian scientists research into chemical uses of timber

    SciTech Connect

    Not Available

    1982-03-20

    Scientists of the Institute of Wood Chemistry of the Latvian Academy of Sciences have developed two highly efficient processes for producing furfural, a feedstock for varnishes, synthetic resins and plastics. It is made of production wastes, including branches and small-dimension timber. By one process, the raw material is chipped, treated first with diluted sulphuric acid and then with steam heated to 250 degrees C. The other uses concentrated sulphuric acid as a catalyst. Besides furfural, this process also yields sugar solutions used in alcohol and nutrient yeast production.

  7. Prediction of Malaysian monthly GDP

    NASA Astrophysics Data System (ADS)

    Hin, Pooi Ah; Ching, Soo Huei; Yeing, Pan Wei

    2015-12-01

    The paper attempts to use a method based on multivariate power-normal distribution to predict the Malaysian Gross Domestic Product next month. Letting r(t) be the vector consisting of the month-t values on m selected macroeconomic variables, and GDP, we model the month-(t+1) GDP to be dependent on the present and l-1 past values r(t), r(t-1),…,r(t-l+1) via a conditional distribution which is derived from a [(m+1)l+1]-dimensional power-normal distribution. The 100(α/2)% and 100(1-α/2)% points of the conditional distribution may be used to form an out-of sample prediction interval. This interval together with the mean of the conditional distribution may be used to predict the month-(t+1) GDP. The mean absolute percentage error (MAPE), estimated coverage probability and average length of the prediction interval are used as the criterions for selecting the suitable lag value l-1 and the subset from a pool of 17 macroeconomic variables. It is found that the relatively better models would be those of which 2 ≤ l ≤ 3, and involving one or two of the macroeconomic variables given by Market Indicative Yield, Oil Prices, Exchange Rate and Import Trade.

  8. Characterization of GDP-Fucose

    PubMed Central

    James, Douglas W.; Jones, Russell L.

    1979-01-01

    The peripheral root cap cells of corn (cv. SX-17A) secrete a fucose-rich, high molecular weight, polysaccharide slime via the dictyosome pathway. To study the synthesis of this polysaccharide, a technique for isolating and assaying GDP-fucose:polysaccharide fucosyl transferase activity was developed. Corn roots were excised from germinated seeds, incubated 12 hours at 10 C in water, and ground in 100 millimolar Tris or Pipes buffer (pH 7.0) with or without 0.5 molar sucrose. The membrane-bound enzyme was solubilized by sonication in the presence of 2 molar urea and 1.5% (v/v) Triton X-100 and assayed by monitoring the incorporation of GDP-[14C]fucose into endogenous acceptors. Optimum enzyme activity is expressed at pH 7.0 and 30 C in the presence of 0.8% (v/v) Triton X-100. The enzyme does not require divalent cations for activation and is inhibited by concentrations of MnCl2 or MgCl2 greater than 1 millimolar. Corn root cap slime will serve as an exogenous acceptor for the enzyme if it is first hydrolyzed in 5 millimolar trifluoroacetic acid for 60 minutes at 18 pounds per square inch, 121 C. This procedure prepares the acceptor by removing terminal fucose residues from the slime molecule. Kinetics of fucose release during hydrolysis of native slime and in vitro synthesized product suggests that the two polymers possess similar linkages to fucose. PMID:16661104

  9. Improvement of Latvian Geoid Model Using GNSS/Levelling, GOCE Data and Vertical Deflection Measurements

    NASA Astrophysics Data System (ADS)

    Janpaule, Inese; Haritonova, Diana; Balodis, Janis; Zarins, Ansis; Silabriedis, Gunars; Kaminskis, Janis

    2015-03-01

    Development of a digital zenith telescope prototype, improved zenith camera construction and analysis of experimental vertical deflection measurements for the improvement of the Latvian geoid model has been performed at the Institute of Geodesy and Geoinformatics (GGI), University of Latvia. GOCE satellite data was used to compute geoid model for the Riga region, and European gravimetric geoid model EGG97 and 102 data points of GNSS/levelling were used as input data in the calculations of Latvian geoid model.

  10. Bioaccumulation of hepatotoxins - a considerable risk in the Latvian environment.

    PubMed

    Barda, Ieva; Kankaanaää, Harri; Purina, Ingrida; Balode, Maija; Sjövall, Olli; Meriluoto, Jussi

    2015-01-01

    The Gulf of Riga, river Daugava and several interconnected lakes around the City of Riga, Latvia, form adynamic brackish-freshwater system favouring occurrence of toxic cyanobacteria. We examined bioaccumulation of microcystins and nodularin-R in aquatic organisms in Latvian lakes, the Gulf of Riga and west coast of open Baltic Sea in 2002-2007. The freshwater unionids accumulated toxins efficiently,followed by snails. In contrast, Dreissena polymorpha and most lake fishes (except roach) accumulated much less hepatotoxins. Significant nodularin-R concentrations were detected also in marine clams and flounders. No transfer of nodularin-R and microcystins between lake and brackish water systems took place. Lake mussels can transfer hepatotoxins to higher organisms, and also effectively remove toxins from the water column. Obvious health risks to aquatic organisms and humans are discussed. PMID:25463728

  11. Beyond GDP: Classifying Alternative Measures for Progress

    ERIC Educational Resources Information Center

    Bleys, Brent

    2012-01-01

    Both the potential pitfalls of macro-economic policies focused on stimulating economic growth and the problems involved in using GDP as a measure of well-being or economic welfare have long been recognized by economists and researchers from other social sciences. Therefore, it is no surprise that alternative measures for policy-making have been…

  12. Y-Chromosomal Lineages of Latvians in the Context of the Genetic Variation of the Eastern-Baltic Region.

    PubMed

    Pliss, Liana; Timša, Līga; Rootsi, Siiri; Tambets, Kristiina; Pelnena, Inese; Zole, Egija; Puzuka, Agrita; Sabule, Areta; Rozane, Sandra; Lace, Baiba; Kucinskas, Vaidutis; Krumina, Astrida; Ranka, Renate; Baumanis, Viesturs

    2015-11-01

    Variations of the nonrecombining Y-chromosomal region were investigated in 159 unrelated Baltic-speaking ethnic Latvians from four different geographic regions, using 28 biallelic markers and 12 short tandem repeats. Eleven different haplogroups (hgs) were detected in a regionally homogeneous Latvian population, among which N1c, R1a, and I1 cover more than 85% of its paternal lineages. When compared its closest geographic neighbors, the composition of the Latvian Y-chromosomal gene pool was found to be very similar to those of Lithuanians and Estonians. Despite the comparable frequency distribution of hg N1c in Latvians and Lithuanians with the Finno-Ugric-speaking populations from the Eastern coast of the Baltic Sea, the observed differences in allelic variances of N1c haplotypes between these two groups are in concordance with the previously stated hypothesis of different dispersal ways of this lineage in the region. More than a third of Latvian paternal lineages belong specifically to a recently defined R1a-M558 hg, indicating an influence from a common source within Eastern Slavic populations on the formation of the present-day Latvian Y-chromosome gene pool. PMID:26411886

  13. Democracy, GDP, and the Impact of Natural Disasters

    NASA Astrophysics Data System (ADS)

    van der Vink, G.; Brett, A. P.; Burgess, E.; Cecil-Cockwell, D.; Chicoine, A.; Difiore, P.; Harding, J.; Millian, C.; Olivi, E.; Piaskowy, S.; Sproat, J.; van der Hoop, H.; Walsh, P.; Warren, A.; West, L.; Wright, G.

    2007-05-01

    In 1998 Amartya Sen won the Nobel Prize in economics for the observation that there has never been a famine in a nation with a democratic form of government and a free press. We find that a similar relationship can be demonstrated for all natural disasters. Data from the United Nations Food Programme and the United States Office of Foreign Disaster Assistance is used to display strong correlations between the democracy index, GDP, and the humanitarian impact of natural disasters. We find that nations in which disasters have high humanitarian impact, approximated by lives lost, are also nations which are below the median per capita GDP and the median democracy level. While the response to natural disasters varies from country to country, several additional global trends are observed. Since 1964, the number of recorded natural disasters has increased by a factor of five. During this same time period the number of deaths has decreased significantly. In particular, the humanitarian impact of the 'typical' natural disaster has decreased by a factor of five. Post-disaster foreign aid is the common response from the international community when a natural disaster strikes. Our study also compares the history of foreign aid grants distributed by the US Office of Foreign Disaster Aid (OFDA) with the number of deaths worldwide from natural disasters. We find that the amount of aid given is responsive to the degree of global humanitarian impact.

  14. Short-Term Forecasting of Loads and Wind Power for Latvian Power System: Accuracy and Capacity of the Developed Tools

    NASA Astrophysics Data System (ADS)

    Radziukynas, V.; Klementavičius, A.

    2016-04-01

    The paper analyses the performance results of the recently developed short-term forecasting suit for the Latvian power system. The system load and wind power are forecasted using ANN and ARIMA models, respectively, and the forecasting accuracy is evaluated in terms of errors, mean absolute errors and mean absolute percentage errors. The investigation of influence of additional input variables on load forecasting errors is performed. The interplay of hourly loads and wind power forecasting errors is also evaluated for the Latvian power system with historical loads (the year 2011) and planned wind power capacities (the year 2023).

  15. Life Cycle Assessment of Biogas Production from Marine Macroalgae: a Latvian Scenario

    NASA Astrophysics Data System (ADS)

    Pilicka, Iluta; Blumberga, Dagnija; Romagnoli, Francesco

    2011-01-01

    There is potential environmental benefit to be gained from the use of algae because of their ability to fix CO2, no need for direct land use and utilization of bio-waste (rich in potassium, phosphate and nitrogen based compounds) as a nutrients. The aim of the research is to assess the impact of biogas production and the final use in a cogeneration unit system from a Life Cycle Assessment (LCA) in comparison with a similar reference system using a non-renewable source (e.g. natural gas). The paper is intended to be a preliminary study for understanding the implementation of this novel technology in a Latvian context.

  16. Risk factors for long-term mental and psychosomatic distress in Latvian Chernobyl liquidators.

    PubMed Central

    Viel, J F; Curbakova, E; Dzerve, B; Eglite, M; Zvagule, T; Vincent, C

    1997-01-01

    Epidemiologic studies on the health effects of the Chernobyl disaster have focused largely on physical health, whereas the psychological consequences have received little attention. The authors have assessed the associations of various exposure variables with mental and psychosomatic distress in a sample of 1412 Latvian liquidators drawn from the State Latvian Chernobyl Clean-up Workers Registry. The outcome was a mixed mental-psychosomatic disorder occurring during 1986 to 1995. Comparisons among subgroups of the cohort classified according to exposure type or level were based on the proportional hazards model. Length of work (> or = 28 days) in a 10-km radius from the reactor (relative risk [RR] = 1.39, 95% confidence interval [CI] 1.14-1.70), work (> 1 time) on the damaged reactor roof (RR = 1.46, 95% CI 1.02-2.09), forest work (RR = 1.41, 95% CI 1.19-1.68), fresh fruit consumption (> or = 1 time/day) (RR = 1.72, 95% CI 1.12-2.65) are risk factors for mixed mental-psychosomatic disorder. Construction of the sarcophagus (RR = 1.82, 95% CI 0.89-3.72) is also associated with this outcome, although nonsignificantly. Distinguishing stress-related from radiation-induced effects in this data set was difficult and these findings should provide a basis for later hypothesis testing in other cohorts. PMID:9467079

  17. Distributions of region size and GDP and their relation

    NASA Astrophysics Data System (ADS)

    Sen, Hu; Chunxia, Yang; Xueshuai, Zhu; Zhilai, Zheng; Ya, Cao

    2015-07-01

    We first analyze the distribution of metropolitan (city) size, the distribution of metropolitan (city) GDP and the relation of both distributions. It is found that (1) the tails of distributions of size and GDP both obey Pareto Law with the Pareto exponent 1; (2) compared with Pareto exponent in GDP, Pareto exponent in size is bigger. Then an agent model is built to study the underlying formation mechanism of distributions of region size and GDP. Our model presents the mechanism how economic factors flow between regions to reproduce the tail behavior and the difference between the Pareto exponents of size and those of GDP. At last, the simulated results agree with the real empirical well.

  18. Trends in nutrient concentrations in Latvian rivers and the response to the dramatic change in agriculture

    NASA Astrophysics Data System (ADS)

    Stålnacke, P.; Grimvall, A.; Libiseller, C.; Laznik, M.; Kokorite, I.

    2003-12-01

    In recent years, the use of fertilisers in the Baltic countries (Estonia, Latvia, and Lithuania) has decreased at an unprecedented rate. The import of mineral fertilisers and feed stuff became almost non-existent, and extensive slaughtering of livestock reduced the amount of manure. In Latvia, the purchase of mineral fertilisers decreased by a factor of 15 between 1987 and 1996 and the number of livestock decreased with a factor of almost 4 during the same time period. Such abrupt and comprehensive changes in land use have never before occurred in the history of modern European agriculture. Here, the impact that this dramatic reduction has had on concentrations of nutrients in Latvian rivers is examined. To discern temporal changes, statistical analyses were undertaken on time series of nutrient concentrations and relationships between concentrations and runoff at 12 sampling sites in ten Latvian rivers covering drainage areas from 334 to 64,000 km 2. Considering the study period 1987-1998, only four of the 12 sites showed statistically significant downward trends (one-sided test at the 5% level) in the dissolved inorganic nitrogen (DIN=NO 3-N+NO 2-N+NH 4-N) data. There are probably two main explanations for the weak DIN trends. Firstly, long water-transit times in the soilwater and groundwater may have caused substantial time lag between changes in input and output of nitrate in the studied catchments. Secondly, the loss of DIN might have been dominated by mineralisation of large pools of organic nitrogen that have accumulated over several years. These inferences are supported by (i) a hydrograph recession analysis and (ii) indications of DIN transformation processes, presumably denitrification, in smaller streams and channels, based on measurements in small agricultural catchments (1-4 km 2) in Estonia and Latvia. Formal testing of trends in phosphorus data revealed that marked drops occurred in riverine concentrations at six sites in 1987-1998. A joint analysis

  19. A reassessment of the relationship between GDP and life satisfaction.

    PubMed

    Proto, Eugenio; Rustichini, Aldo

    2013-01-01

    The scientific debate on the relation between Gross Domestic Product (GDP) and self reported indices of life satisfaction is still open. In a well-known finding, Easterlin reported no significant relationship between happiness and aggregate income in time-series analysis. However, life satisfaction appears to be strictly monotonically increasing with income when one studies this relation at a point in time across nations. Here, we analyze the relation between per capita GDP and life satisfaction without imposing a functional form and eliminating potentially confounding country-specific factors. We show that this relation clearly increases in country with a per capita GDP below 15,000 USD (2005 in Purchasing Power Parity), then it flattens for richer countries. The probability of reporting the highest level of life satisfaction is more than 12% lower in the poor countries with a per capita GDP below 5,600 USD than in the counties with a per capita GDP of about 15,000 USD. In countries with an income above 17,000 USD the probability of reporting the highest level of life satisfaction changes within a range of 2% maximum. Interestingly enough, life satisfaction seems to peak at around 30,000 USD and then slightly but significantly decline among the richest countries. These results suggest an explanation of the Easterlin paradox: life satisfaction increases with GDP in poor country, but this relation is approximately flat in richer countries. We explain this relation with aspiration levels. We assume that a gap between aspiration and realized income is negatively perceived; and aspirations to higher income increase with income. These facts together have a negative effect on life satisfaction, opposite to the positive direct effect of the income. The net effect is ambiguous. We predict a higher negative effect in individuals with higher sensitivity to losses (measured by their neuroticism score) and provide econometric support of this explanation. PMID:24312179

  20. A Reassessment of the Relationship between GDP and Life Satisfaction

    PubMed Central

    Proto, Eugenio; Rustichini, Aldo

    2013-01-01

    The scientific debate on the relation between Gross Domestic Product (GDP) and self reported indices of life satisfaction is still open. In a well-known finding, Easterlin reported no significant relationship between happiness and aggregate income in time-series analysis. However, life satisfaction appears to be strictly monotonically increasing with income when one studies this relation at a point in time across nations. Here, we analyze the relation between per capita GDP and life satisfaction without imposing a functional form and eliminating potentially confounding country-specific factors. We show that this relation clearly increases in country with a per capita GDP below 15,000 USD (2005 in Purchasing Power Parity), then it flattens for richer countries. The probability of reporting the highest level of life satisfaction is more than 12% lower in the poor countries with a per capita GDP below 5,600 USD than in the counties with a per capita GDP of about 15,000 USD. In countries with an income above 17,000 USD the probability of reporting the highest level of life satisfaction changes within a range of 2% maximum. Interestingly enough, life satisfaction seems to peak at around 30,000 USD and then slightly but significantly decline among the richest countries. These results suggest an explanation of the Easterlin paradox: life satisfaction increases with GDP in poor country, but this relation is approximately flat in richer countries. We explain this relation with aspiration levels. We assume that a gap between aspiration and realized income is negatively perceived; and aspirations to higher income increase with income. These facts together have a negative effect on life satisfaction, opposite to the positive direct effect of the income. The net effect is ambiguous. We predict a higher negative effect in individuals with higher sensitivity to losses (measured by their neuroticism score) and provide econometric support of this explanation. PMID:24312179

  1. Evaluation of the antibacterial and hemolytic activities of Latvian herbal preparation.

    PubMed

    Atroshi, F; Ali-Vehmas, T; Westermarck, T; Rizzo, A; Selga, G; Baltais, A; Linars, J; Saulite, V; Daukste, A

    2000-12-01

    Three extracts originating from a combination of various Latvian plant species were tested for their antibacterial activities by evaluating growth delays using a fully automated microturbidimetric method. Ten different human and bovine strains of the genera Staphylococcus and Micrococcus were used as test microorganisms. The inhibitory effect in vitro was defined as the difference between the growth rate without herbs and the growth rate in the presence of an extract. Among the tested strains, Staphylococcus aureus was found sensitive to all 3 extracts. However, extract I was the most effective in slowing the growth of all strains tested. Using appropriate tester strains it should be possible to set up a broad-range microtubidimetry assay for individual herb screening in vitro. The hemolytic effects of the individual extracts on human erythrocytes were also studied at different concentrations. Two of the herbal extracts had minimal lytic effects on eurocaryotic cells. An additional hemolysis test was conducted in the presence of coenzyme Q10 (CoQ10) as a free radical scavenger: CoQ10 had no effect on the hemolytic reaction. PMID:11111939

  2. [150th birth anniversary of Izidor Brennsohn, Latvian historian of medicine and researcher of Lithuanian anthropology].

    PubMed

    Andriusis, Aurimas; Viksna, Arnis

    2004-01-01

    This publication is dedicated to the 150th birth anniversary of a famous German-writing Latvian physician, historian of medicine, and anthropologist of Jewish descent Izidor Brennsohn, and to his ties with Lithuania. I. Brennsohn's works on physicians and the development of health care in Kurland, Livland, and Estland laid the foundations for the contemporary historiography of medicine in Latvia and Estonia. To a certain extent, these works could also be viewed as a digest of the sources of Lithuanian history of medicine, especially in regard to the regions on the boarder with Latvia, as well as to various personalities. However, Brennsohn's most important link with Lithuania was his doctoral thesis "On Lithuanian anthropology" ("Zur Anthropologie der Litauer"), defended at Dorpat (Tartu) University in 1883. It was one of the first works dealing with Lithuanian ethnic anthropology as a whole. Although, material of thesis could not be used for wider generalizations, still, it is one of rare and valuable 19th century sources of Lithuanian anthropology. Brennsohn's legacy deserves greater attention from people researching medical history in Lithuania. PMID:15456980

  3. Structures of NodZ α1,6-fucosyltransferase in complex with GDP and GDP-fucose

    SciTech Connect

    Brzezinski, Krzysztof; Dauter, Zbigniew; Jaskolski, Mariusz

    2012-02-01

    Crystal structures of the bacterial α1,6-fucosyltransferase NodZ in complex with GDP and GDP-fucose are presented. Rhizobial NodZ α1,6-fucosyltransferase (α1,6-FucT) catalyzes the transfer of the fucose (Fuc) moiety from guanosine 5′-diphosphate-β-l-fucose to the reducing end of the chitin oligosaccharide core during Nod-factor (NF) biosynthesis. NF is a key signalling molecule required for successful symbiosis with a legume host for atmospheric nitrogen fixation. To date, only two α1,6-FucT structures have been determined, both without any donor or acceptor molecule that could highlight the structural background of the catalytic mechanism. Here, the first crystal structures of α1,6-FucT in complex with its substrate GDP-Fuc and with GDP, which is a byproduct of the enzymatic reaction, are presented. The crystal of the complex with GDP-Fuc was obtained through soaking of native NodZ crystals with the ligand and its structure has been determined at 2.35 Å resolution. The fucose residue is exposed to solvent and is disordered. The enzyme–product complex crystal was obtained by cocrystallization with GDP and an acceptor molecule, penta-N-acetyl-l-glucosamine (penta-NAG). The structure has been determined at 1.98 Å resolution, showing that only the GDP molecule is present in the complex. In both structures the ligands are located in a cleft formed between the two domains of NodZ and extend towards the C-terminal domain, but their conformations differ significantly. The structures revealed that residues in three regions of the C-terminal domain, which are conserved among α1,2-, α1,6- and protein O-fucosyltransferases, are involved in interactions with the sugar-donor molecule. There is also an interaction with the side chain of Tyr45 in the N-terminal domain, which is very unusual for a GT-B-type glycosyltransferase. Only minor conformational changes of the protein backbone are observed upon ligand binding. The only exception is a movement of the loop

  4. CDKN2A and CDK4 variants in Latvian melanoma patients: analysis of a clinic-based population.

    PubMed

    Pjanova, Dace; Engele, Ludmila; Randerson-Moor, Juliette A; Harland, Mark; Bishop, D Timothy; Newton Bishop, Julia A; Taylor, Claire; Debniak, Tadeusz; Lubinski, Jan; Kleina, Regina; Heisele, Olita

    2007-06-01

    Germline mutations of the CDKN2A and CDK4 genes explain a significant proportion of familial melanoma. To date, there have been few published estimations of the prevalence of such mutations in sporadic melanoma patients. In this study, we investigated CDKN2A and CDK4 exon 2 for germline mutations in 125 consecutive cutaneous malignant melanoma patients recruited through the Latvian Oncological Center, using amplicon melting analysis and sequencing. No disease-related CDKN2A germline mutations were identified in any of the melanoma patients analysed but the previously described CDK4 mutation, Arg24His, was found in one patient with a family history of melanoma. CDKN2A polymorphisms were studied as putative low penetrance susceptibility genes. The proportion of cases with polymorphisms in this Latvian melanoma population was Ala148Thr (c.442G>A) (6%), 500 C/G (c.*29C>G) (18%), and 540 C/T (c.*69C>T) (20%); however, only the frequency of the Ala148Thr polymorphism was higher in melanoma patients than in 203 controls (6 versus 1%, P=0.03). Ala148Thr has also been reported in association with melanoma in a Polish series but not in an English series. We therefore examined the Ala148Thr carrier's haplotype in 10 Latvian and 39 Polish samples. No significant difference was seen between these populations and the predominant haplotype observed in English samples, giving no indication that the discrepancy could be explained by population differences in linkage disequilibrium. In summary, our results show that germline mutations at the CDKN2A locus are rare in sporadic melanoma in Latvia. The study does, however, provide some additional evidence for a role for the CDKN2A polymorphism Ala148Thr as a low penetrance susceptibility gene. The detected CDK4 exon 2 mutation was found in only the seventh family identified worldwide with a germline CDK4 mutation. PMID:17505264

  5. Association between CETP, MLXIPL, and TOMM40 polymorphisms and serum lipid levels in a Latvian population

    PubMed Central

    Radovica, I.; Fridmanis, D.; Silamikelis, I.; Nikitina-Zake, L.; Klovins, J.

    2014-01-01

    Background Abnormal lipid levels are considered one of the most significant risk factors for atherosclerosis and coronary artery disease, two of the main causes of death worldwide. Apart from monogenic cases of hypercholesterolemia, most of the common dyslipidemias are caused by a number of low-impact polymorphisms. It has recently been reported that frequent polymorphisms at a large number of loci are significantly associated with one or more blood lipid parameters in many populations. Identifying these associations in different populations and estimating the possible interactions between genetic models are necessary to explain the underlying genetic architecture of the associated loci and their ultimate impact on lipid-associated traits. Methods We estimated the association between 144 common single-nucleotide polymorphisms (SNPs) from published genome-wide association studies and the levels of total cholesterol, low- and high-density lipoprotein–cholesterol, and triglycerides in 1273 individuals from the Genome Database of the Latvian Population. We analyzed a panel of 144 common SNPs with Illumina GoldenGate Genotyping Assays on the Illumina BeadXpress System. Results Ten SNPs at the CETP locus and two at the MLXIPL locus were associated with reduced high-density lipoprotein–cholesterol levels; one SNP at the TOMM40 locus was associated with increased low-density lipoprotein–cholesterol; and four SNPs at the MLXIPL locus were associated with increased log triglyceride levels. There was also a significant correlation between the number of risk alleles and all the lipid parameters, suggesting that the coexistence of many low-impact SNPs has a greater effect on the dyslipidemia phenotype than the individual effects of found SNPs. Conclusion We conclude that the CETP, MLXIPL, and TOMM40 loci are the strongest genetic factors underlying the variability in lipid traits in our population. PMID:25606439

  6. Brown adipose tissue mitochondria: modulation by GDP and fatty acids depends on the respiratory substrates

    PubMed Central

    De Meis, Leopoldo; Ketzer, Luisa A.; Camacho-Pereira, Juliana; Galina, Antonio

    2011-01-01

    The UCP1 [first UCP (uncoupling protein)] that is found in the mitochondria of brown adipocytes [BAT (brown adipose tissue)] regulates the heat production, a process linked to non-shivering thermogenesis. The activity of UCP1 is modulated by GDP and fatty acids. In this report, we demonstrate that respiration and heat released by BAT mitochondria vary depending on the respiratory substrate utilized and the coupling state of the mitochondria. It has already been established that, in the presence of pyruvate/malate, BAT mitochondria are coupled by faf-BSA (fatty-acid-free BSA) and GDP, leading to an increase in ATP synthesis and mitochondrial membrane potential along with simultaneous decreases in both the rates of respiration and heat production. Oleate restores the uncoupled state, inhibiting ATP synthesis and increasing the rates of both respiration and heat production. We now show that in the presence of succinate: (i) the rates of uncoupled mitochondria respiration and heat production are five times slower than in the presence of pyruvate/malate; (ii) faf-BSA and GDP accelerate heat and respiration as a result and, in coupled mitochondria, these two rates are accelerated compared with pyruvate/malate; (iii) in spite of the differences in respiration and heat production noted with the two substrates, the membrane potential and the ATP synthesized were the same; and (iv) oleate promoted a decrease in heat production and respiration in coupled mitochondria, an effect different from that observed using pyruvate/malate. These effects are not related to the production of ROS (reactive oxygen species). We suggest that succinate could stimulate a new route to heat production in BAT mitochondria. PMID:21561434

  7. How Students Learn to Teach? A Case Study of Instrumental Lessons Given by Latvian Undergraduate Performer Students without Prior Teacher Training

    ERIC Educational Resources Information Center

    Fernandez Gonzalez, Manuel Joaquin

    2012-01-01

    The purpose of this study was to describe and discuss the way students of the Latvian Academy of Music teach before having entered a teacher training programme. Five hours of students' teaching work was video-taped, analysed and discussed with them between the spring of 2010 and the winter of 2011. The descriptive and analytic results of this…

  8. Association of BMP4 polymorphisms with non-syndromic cleft lip with or without cleft palate and isolated cleft palate in Latvian and Lithuanian populations.

    PubMed

    Kempa, Inga; Ambrozaitytė, Laima; Stavusis, Janis; Akota, Ilze; Barkane, Biruta; Krumina, Astrida; Matulevičienė, Aušra; Utkus, Algirdas; Kučinskas, Vaidutis; Lace, Baiba

    2014-01-01

    Cleft lip with or without cleft palate (CLP and CL, respectively) and isolated cleft palate (CP) represent one of the most common human birth defects, with a prevalence of approximately 1 in 300-2500 depending on the population. Formation of non-syndromic CL/CLP and CP arises from the interaction of environmental and genetic factors. The objective of this study was to investigate the association between the BMP4 gene (encoding bone morphogenetic protein 4) and non-syndromic CL/CLP and CP in order to clarify the role of this gene in the aetiology of the malformation in Latvian and Lithuanian populations. We genotyped three markers of the BMP4 gene (rs17563, rs2071047 and rs1957860) in order to perform single marker and haplotype association analyses for Latvian and Lithuanian non-syndromic CL/CLP and CP patients and controls. Transmission disequilibrium test was also conducted for Latvian and Lithuanian proband-parent trios. The case-control analysis revealed that SNP rs2071047 allele A was associated with a decreased risk of CL/CLP in the Latvian population, which was confirmed by the haplotype analysis. A modest association was detected between SNP rs1957860 and CP in the Lithuanian population, where allele C was associated with a decreased risk of this cleft phenotype, corroborating haplotype analysis data. Our findings support a role of the BMP4 gene in the aetiology of non-syndromic CL/CLP and CP in the studied populations. PMID:25471993

  9. Activation of brown adipose tissue mitochondrial GDP binding sites

    SciTech Connect

    Swick, A.G.

    1987-01-01

    The primary function of brown adipose tissue (BAT) is heat production. This ability is attributed to the existence of a unique inner mitochondrial membrane protein termed the uncoupling protein or thermogenin. This protein is permeable to H+ and thus allows respiration (and therefore thermogenesis) to proceed at a rapid rate, independent of ADP phosphorylation. Proton conductance can be inhibited by the binding of purine nucleotides to the uncoupling protein. The binding of (/sup 3/H)-GDP to BAT mitochondria is frequently used as a measure of BAT thermogenic activity. Rats fed a diet that was low but adequate in protein exhibited a decrease in feed efficiency. In addition, BAT thermogenesis was activated as indicated by an elevation in the level of GDP binding to BAT mitochondria. This phenomena occurred in older rats and persisted over time.

  10. Structures of NodZ [alpha]1,6-fucosyltransferase in complex with GDP and GDP-fucose

    SciTech Connect

    Brzezinski, Krzysztof; Dauter, Zbigniew; Jaskolski, Mariusz

    2012-03-26

    Rhizobial NodZ {alpha}1,6-fucosyltransferase ({alpha}1,6-FucT) catalyzes the transfer of the fucose (Fuc) moiety from guanosine 5'-diphosphate-{beta}-L-fucose to the reducing end of the chitin oligosaccharide core during Nod-factor (NF) biosynthesis. NF is a key signaling molecule required for successful symbiosis with a legume host for atmospheric nitrogen fixation. To date, only two {alpha}1,6-FucT structures have been determined, both without any donor or acceptor molecule that could highlight the structural background of the catalytic mechanism. Here, the first crystal structures of {alpha}1,6-FucT in complex with its substrate GDP-Fuc and with GDP, which is a byproduct of the enzymatic reaction, are presented. The crystal of the complex with GDP-Fuc was obtained through soaking of native NodZ crystals with the ligand and its structure has been determined at 2.35 {angstrom} resolution. The fucose residue is exposed to solvent and is disordered. The enzyme-product complex crystal was obtained by cocrystallization with GDP and an acceptor molecule, penta-N-acetyl-L-glucosamine (penta-NAG). The structure has been determined at 1.98 {angstrom} resolution, showing that only the GDP molecule is present in the complex. In both structures the ligands are located in a cleft formed between the two domains of NodZ and extend towards the C-terminal domain, but their conformations differ significantly. The structures revealed that residues in three regions of the C-terminal domain, which are conserved among {alpha}1,2-, {alpha}1,6- and protein O-fucosyltransferases, are involved in interactions with the sugar-donor molecule. There is also an interaction with the side chain of Tyr45 in the N-terminal domain, which is very unusual for a GT-B-type glycosyltransferase. Only minor conformational changes of the protein backbone are observed upon ligand binding. The only exception is a movement of the loop located between strand {beta}C2 and helix {alpha}C3. In addition, there is

  11. Labelled drug-related public expenditure in relation to gross domestic product (GDP) in Europe: a luxury good?

    PubMed

    Prieto, Luis

    2010-01-01

    "Labelled drug-related public expenditure" is the direct expenditure explicitly labelled as related to illicit drugs by the general government of the state. As part of the reporting exercise corresponding to 2005, the European Monitoring Centre for Drugs and Drug Addiction's network of national focal points set up in the 27 European Union (EU) Member States, Norway, and the candidates countries to the EU, were requested to identify labelled drug-related public expenditure, at the country level. This was reported by 10 countries categorised according to the functions of government, amounting to a total of EUR 2.17 billion. Overall, the highest proportion of this total came within the government functions of Health (66%), and Public Order and Safety (POS) (20%). By country, the average share of GDP was 0.023% for Health, and 0.013% for POS. However, these shares varied considerably across countries, ranging from 0.00033% in Slovakia, up to 0.053% of GDP in Ireland in the case of Health, and from 0.003% in Portugal, to 0.02% in the UK, in the case of POS; almost a 161-fold difference between the highest and the lowest countries for Health, and a 6-fold difference for POS. Why do Ireland and the UK spend so much in Health and POS, or Slovakia and Portugal so little, in GDP terms? To respond to this question and to make a comprehensive assessment of drug-related public expenditure across countries, this study compared Health and POS spending and GDP in the 10 reporting countries. Results found suggest GDP to be a major determinant of the Health and POS drug-related public expenditures of a country. Labelled drug-related public expenditure showed a positive association with the GDP across the countries considered: r = 0.81 in the case of Health, and r = 0.91 for POS. The percentage change in Health and POS expenditures due to a one percent increase in GDP (the income elasticity of demand) was estimated to be 1.78% and 1.23% respectively. Being highly income elastic

  12. Paramecium bursaria Chlorella virus 1 encodes two enzymes involved in the biosynthesis of GDP-L-fucose and GDP-D-rhamnose.

    PubMed

    Tonetti, Michela; Zanardi, Davide; Gurnon, James R; Fruscione, Floriana; Armirotti, Andrea; Damonte, Gianluca; Sturla, Laura; De Flora, Antonio; Van Etten, James L

    2003-06-13

    At least three structural proteins in Paramecium bursaria Chlorella virus (PBCV-1) are glycosylated, including the major capsid protein Vp54. However, unlike other glycoprotein-containing viruses that use host-encoded enzymes in the endoplasmic reticulum-Golgi to glycosylate their proteins, PBCV-1 encodes at least many, if not all, of the glycosyltransferases used to glycosylate its structural proteins. As described here, PBCV-1 also encodes two open reading frames that resemble bacterial and mammalian enzymes involved in de novo GDP-L-fucose biosynthesis. This pathway, starting from GDP-D-mannose, consists of two sequential steps catalyzed by GDP-D-mannose 4,6 dehydratase (GMD) and GDP-4-keto-6-deoxy-D-mannose epimerase/reductase, respectively. The two PBCV-1-encoded genes were expressed in Escherichia coli, and the recombinant proteins had the predicted enzyme activity. However, in addition to the dehydratase activity, PBCV-1 GMD also had a reductase activity, producing GDP-D-rhamnose. In vivo studies established that PBCV-1 GMD and GDP-4-keto-6-deoxy-D-mannose epimerase/reductase are expressed after virus infection and that both GDP-L-fucose and GDP-D-rhamnose are produced in virus-infected cells. Thus, PBCV-1 is the first virus known to encode enzymes involved in nucleotide sugar metabolism. Because fucose and rhamnose are components of the glycans attached to Vp54, the pathway could circumvent a limited supply of GDP sugars by the algal host. PMID:12679342

  13. LM-research opportunities and activities at the Latvian Academy of Sciences

    SciTech Connect

    Lielausis, O.

    1996-06-01

    In this presentation selected examples will be considered characterizing the breadth of their interests in LM applications. So, InGaSn eutectic was used as a modeling liquid for investigation of MHD effects typical to some LM-blanket configurations. LM coatings proposed for the protection of divertor plates were considered too. Experiments were performed on a superconducting magnet providing a 5.6 T magnetic field in a 30 liters bore. In a large vacuum chamber (12 m{sup 3}; 6.65 10{sup {minus}4} Pa) lithium cooling system for high temperature reactors was examined. Electromagnetic pumps and flowmeters able to work at lithium temperatures up to 960{degrees}C were tested. A Na loop, where two mounted in line electromagnetic pumps are delivering a 25 atm. pressure. The main Na loop equipped with em. pumps is based on a d=10 cm tubing. LM devices were installed in the Latvian 500 MW nuclear research reactor IRT-5000 too. First, a equipped with conductive e.m. pumps loop, where InGaSn serves as a {gamma}-carrier from activity generator (placed close to the core) to two outer 20 Mrad/h irradiators. Second, a LM system for rector control, where contained in InGaSn indium is used for neutron absorption and reactivity control. A closed cylindrical LM container was installed in the core instead of a traditional control rod. The container is divided in two chambers by means of elastic membranes. The one chamber contains InGaSn, the second GaSn (without In). By means of e.m. pumps the proportion between InGaSn and GaSn in the active zone can be changed ensuring a possibility to control the amount of introduced in the core absorbing material. Long term tests of the system were performed on a zero-power assembly. But for a shorter time the system was inserted in the core of the acting main reactor too and the efficiency of the control was confirmed.

  14. Performance Analysis of Air-to-Water Heat Pump in Latvian Climate Conditions

    NASA Astrophysics Data System (ADS)

    Kazjonovs, Janis; Sipkevics, Andrejs; Jakovics, Andris; Dancigs, Andris; Bajare, Diana; Dancigs, Leonards

    2014-12-01

    Strategy of the European Union in efficient energy usage demands to have a higher proportion of renewable energy in the energy market. Since heat pumps are considered to be one of the most efficient heating and cooling systems, they will play an important role in the energy consumption reduction in buildings aimed to meet the target of nearly zero energy buildings set out in the EU Directive 2010/31/EU. Unfortunately, the declared heat pump Coefficient of Performance (COP) corresponds to a certain outdoor temperature (+7 °C), therefore different climate conditions, building characteristics and settings result in different COP values during the year. The aim of this research is to investigate the Seasonal Performance factor (SPF) values of air-to-water heat pump which better characterize the effectiveness of heat pump in a longer selected period of time, especially during the winter season, in different types of residential buildings in Latvian climate conditions. Latvia has four pronounced seasons of near-equal length. Winter starts in mid-December and lasts until mid-March. Latvia is characterized by cold, maritime climate (duration of the average heating period being 203 days, the average outdoor air temperature during the heating period being 0.0 °C, the coldest five-day average temperature being -20.7 °C, the average annual air temperature being +6.2 °C, the daily average relative humidity being 79 %). The first part of this research consists of operational air-towater heat pump energy performance monitoring in different residential buildings during the winter season. The second part of the research takes place under natural conditions in an experimental construction stand which is located in an urban environment in Riga, Latvia. The inner area of this test stand, where air-to-water heat pump performance is analyzed, is 9 m2. The ceiling height is 3 m, all external wall constructions (U = 0.16 W/(m2K)) have ventilated facades. To calculate SPF, the

  15. Genotype and allele frequencies of isoniazid-metabolizing enzymes NAT2 and GSTM1 in Latvian tuberculosis patients.

    PubMed

    Igumnova, Viktorija; Capligina, Valentina; Krams, Alvils; Cirule, Andra; Elferts, Didzis; Pole, Ilva; Jansone, Inta; Bandere, Dace; Ranka, Renate

    2016-07-01

    Pharmacogenomic testing of tuberculosis drug-metabolizing enzyme genes was proposed as a strategy to identify patients at risk for suboptimal responses to medications. However, variations of the genotype frequencies among ethnic groups exist and new alleles are been identified. The aim of this study was to identify polymorphisms of genes encoding metabolic enzymes NAT2 and GSTM1 in tuberculosis patients in Latvia and to estimate the frequency of NAT2 slow acetylator and GSTM1 null genotypes. In total, 85 DNA samples were genotyped, all individuals were Caucasian. An ethnic heterogeneity reflecting the multiethnic population of the country was observed. 49 patients were Latvians, 30 were Russians and 6 of other ethnicity. In total, 7 NAT2 alleles were identified: *4, *5, *6, *7, *11, *12, * and *13. The most frequent was the slow acetylation allele NAT2*6 (frequency 0.388) followed by the slow acetylation allele NAT2*5 and the rapid acetylation allele NAT2*4 (frequencies 0.306 and 0.194, respectively). The predominance of slow (51.8%) and intermediate (43.5%) acetylators compared with rapid acetylators (4.7%) was observed. The GSTM1 null genotype was detected in 48.2% of tuberculosis patients. When subgroup analysis was performed according to ethnicity, the results showed that neither NAT2 allele frequencies nor GSTM1 null genotype frequency did not differ significantly in TB patients of Latvian or Russian ethnicity. Overall, genotyping results were similar with previous reports of a NAT2 gene variation and GSTM1 null genotype frequency in Caucasians. Our findings have a contribution for the pharmacogenetics-based tuberculosis therapy in Latvia in future. PMID:27236516

  16. Changes in GDP binding to brown adipose tissue mitochondria and the uncoupling protein

    SciTech Connect

    Swick, A.G.; Swick, R.W. )

    1988-12-01

    Incubation in vitro of brown adipose tissue (BAT) mitochondria with divalent cations, spermine, or alkaline phosphatase led to a marked increase in the binding of ({sup 3}H)GDP. The effect of Mg{sup 2+} appeared to be the most specific and led to the largest increase in GDP binding. A simplified method was developed for measuring GDP binding to purified uncoupling protein from rat BAT mitochondria. Application of this method indicates that uncoupling protein from cold-acclimated rats binds twice as much GDP as uncoupling protein from cold-acclimated rats that were briefly returned to thermoneutrality, paralleling changes in GDP binding to the mitochondria. Incubation of BAT mitochondria with Mg{sup 2+} led to a smaller increase in GDP binding to the subsequently purified uncoupling protein, suggesting that divalent cations may somehow participate in the regulation of the activity of the uncoupling protein.

  17. Roughness Optimization at High Modes for GDP CHx Microshells

    SciTech Connect

    Theobald, M.; Dumay, B.; Chicanne, C.; Barnouin, J.; Legaie, O.; Baclet, P.

    2004-03-15

    For the ''Megajoule'' Laser (LMJ) facility of the CEA, amorphous hydrogenated carbon (a-C:H) is the nominal ablator to be used for inertial confinement fusion (ICF) experiments. These capsules contain the fusible deuterium-tritium mixture to achieve ignition. Coatings are prepared by glow discharge polymerization (GDP) with trans-2-butene and hydrogen. The films properties have been investigated. Laser fusion targets must have optimized characteristics: a diameter of about 2.4 mm for LMJ targets, a thickness up to 175 {mu}m, a sphericity and a thickness concentricity better than 99% and an outer and an inner roughness lower than 20 nm at high modes. The surface finish of these laser fusion targets must be extremely smooth to minimize hydrodynamic instabilities.Movchan and Demchishin, and later Thornton introduced a structure zone model (SZM) based on both evaporated and sputtered metals. They investigated the influence of base temperature and the sputtering gas pressure on structure and properties of thick polycrystalline coatings of nickel, titanium, tungsten, aluminum oxide. An original cross-sectional analysis by atomic force microscopy (AFM) allows amorphous materials characterization and permits to make an analogy between the amorphous GDP material and the existing model (SZM). The purpose of this work is to understand the relationship between the deposition parameters, the growing structures and the surface roughness.The coating structure as a function of deposition parameters was first studied on plane silicon substrates and then optimized on PAMS shells. By adjusting the coating parameters, the structures are modified, and in some case, the high modes roughness decreases dramatically.

  18. Characterization of the GDP-D-mannose biosynthesis pathway in Coxiella burnetii: the initial steps for GDP-β-D-virenose biosynthesis.

    PubMed

    Narasaki, Craig T; Mertens, Katja; Samuel, James E

    2011-01-01

    Coxiella burnetii, the etiologic agent of human Q fever, is a gram-negative and naturally obligate intracellular bacterium. The O-specific polysaccharide chain (O-PS) of the lipopolysaccharide (LPS) of C. burnetii is considered a heteropolymer of the two unusual sugars β-D-virenose and dihydrohydroxystreptose and mannose. We hypothesize that GDP-D-mannose is a metabolic intermediate to GDP-β-D-virenose. GDP-D-mannose is synthesized from fructose-6-phosphate in 3 successive reactions; Isomerization to mannose-6-phosphate catalyzed by a phosphomannose isomerase (PMI), followed by conversion to mannose-1-phosphate mediated by a phosphomannomutase (PMM) and addition of GDP by a GDP-mannose pyrophosphorylase (GMP). GDP-D-mannose is then likely converted to GDP-6-deoxy-D-lyxo-hex-4-ulopyranose (GDP-Sug), a virenose intermediate, by a GDP-mannose-4,6-dehydratase (GMD). To test the validity of this pathway in C. burnetii, three open reading frames (CBU0671, CBU0294 and CBU0689) annotated as bifunctional type II PMI, as PMM or GMD were functionally characterized by complementation of corresponding E. coli mutant strains and in enzymatic assays. CBU0671, failed to complement an Escherichia coli manA (PMM) mutant strain. However, complementation of an E. coli manC (GMP) mutant strain restored capsular polysaccharide biosynthesis. CBU0294 complemented a Pseudomonas aeruginosa algC (GMP) mutant strain and showed phosphoglucomutase activity (PGM) in a pgm E. coli mutant strain. Despite the inability to complement a manA mutant, recombinant C. burnetii PMI protein showed PMM enzymatic activity in biochemical assays. CBU0689 showed dehydratase activity and determined kinetic parameters were consistent with previously reported data from other organisms. These results show the biological function of three C. burnetii LPS biosynthesis enzymes required for the formation of GDP-D-mannose and GDP-Sug. A fundamental understanding of C. burnetii genes that encode PMI, PMM and GMP is

  19. Effects of maternal mortality on gross domestic product (GDP) in the WHO African region.

    PubMed

    Kirigia, Joses M; Oluwole, Doyin; Mwabu, Germano M; Gatwiri, Doris; Kainyu, Lenity H

    2006-01-01

    WHO African region has got the highest maternal mortality rate compared to the other five regions. Maternal mortality is hypothesized to have significantly negative effect on the gross domestic product (GDP). The objective of the current study was to estimate the loss in GDP attributable to maternal mortality in the WHO African Region. The burden of maternal mortality on GDP was estimated using a double-log econometric model. The analysis is based on cross-sectional data for 45 of the 46 Member States in the WHO African Region. Data were obtained from UNDP and the World Bank publications. All the explanatory variables included in the double-log model were found to have statistically significant effect on per capita gross domestic product (GDP) at 5 % level in a t-distribution test. The coefficients for land (D), capital (K), educational enrollment (EN) and exports (X) had a positive sign; while labor (L), imports (M) and maternal mortality rate (MMR) were found to impact negatively on GDP. Maternal mortality of a single person was found to reduce per capita GDP by US $ 0.36 per year. The study has demonstrated that maternal mortality has a statistically significant negative effect on GDP. Thus, as policy-makers strive to increase GDP through land reform programs, capital investments, export promotion and increase in educational enrollment, they should always remember that investment in maternal mortality-reducing interventions promises significant economic returns. PMID:17348747

  20. MECHANICAL PROPERTIES OF THIN GDP SHELLS USED AS CRYOGENIC DIRECT DRIVE TARGETS AT OMEGA

    SciTech Connect

    NIKROO,A; CZECHOWICZ,D; CHEN,K.C; DICKEN,M; MORRIS,C; ANDREWS,R; GREENWOOD,A.L; CASTILLO,E

    2003-06-01

    OAK-B135 Thin glow discharge polymer (GDP) shells are currently used as the targets for cryogenic direct drive laser fusion experiments. These shells need to be filled with nearly 1000 atm of D{sub 2} and cooled to cryogenic temperatures without failing due to buckling and bursting pressures they experience in this process. Therefore, the mechanical and permeation properties of these shells are of utmost importance in successful and rapid filling with D{sub 2}. In this paper, they present an overview of buckle and burst pressures of several different types of GDP shells. These include those made using traditional GDP deposition parameters (standard GDP) using a high deposition pressure and using modified parameters (strong GDP) of low deposition pressure that leads to more robust shells.

  1. Biochemical characterization of GDP-L-fucose de novo synthesis pathway in fungus Mortierella alpina

    SciTech Connect

    Ren, Yan; Perepelov, Andrei V.; Wang, Haiyan; Zhang, Hao; Knirel, Yuriy A.; Wang, Lei; Chen, Wei

    2010-01-22

    Mortierella alpina is a filamentous fungus commonly found in soil, which is able to produce large amount of polyunsaturated fatty acids. L-Fucose is an important sugar found in a diverse range of organisms, playing a variety of biological roles. In this study, we characterized the de novo biosynthetic pathway of GDP-L-fucose (the nucleotide-activated form of L-fucose) in M. alpina. Genes encoding GDP-D-mannose 4,6-dehydratase (GMD) and GDP-keto-6-deoxymannose 3,5-epimerase/4-reductase (GMER) were expressed heterologously in Escherichia coli. The recombinant enzymes were produced as His-tagged fusion proteins. Conversion of GDP-mannose to GDP-4-keto-6-deoxy mannose by GMD and GDP-4-keto-6-deoxy mannose to GDP-L-fucose by GMER were analyzed by capillary electrophoresis, electro-spray ionization-mass spectrometry, and nuclear magnetic resonance spectroscopy. The k{sub m} values of GMD for GDP-mannose and GMER for GDP-4-keto-6-deoxy mannose were determined to be 0.77 mM and 1.047 mM, respectively. Both NADH and NADPH may be used by GMER as the coenzyme. The optimum temperature and pH were determined to be 37 {sup o}C and pH 9.0 (GMD) or pH 7.0 (GMER). Divalent cations are not required for GMD and GMER activity, and the activities of both enzymes may be enhanced by DTT. To our knowledge this is the first report on the characterization of GDP-L-fucose biosynthetic pathway in fungi.

  2. Biosynthesis of GDP-fucose and other sugar nucleotides in the blood stages of Plasmodium falciparum.

    PubMed

    Sanz, Sílvia; Bandini, Giulia; Ospina, Diego; Bernabeu, Maria; Mariño, Karina; Fernández-Becerra, Carmen; Izquierdo, Luis

    2013-06-01

    Carbohydrate structures play important roles in many biological processes, including cell adhesion, cell-cell communication, and host-pathogen interactions. Sugar nucleotides are activated forms of sugars used by the cell as donors for most glycosylation reactions. Using a liquid chromatography-tandem mass spectrometry-based method, we identified and quantified the pools of UDP-glucose, UDP-galactose, UDP-N-acetylglucosamine, GDP-mannose, and GDP-fucose in Plasmodium falciparum intraerythrocytic life stages. We assembled these data with the in silico functional reconstruction of the parasite metabolic pathways obtained from the P. falciparum annotated genome, exposing new active biosynthetic routes crucial for further glycosylation reactions. Fucose is a sugar present in glycoconjugates often associated with recognition and adhesion events. Thus, the GDP-fucose precursor is essential in a wide variety of organisms. P. falciparum presents homologues of GDP-mannose 4,6-dehydratase and GDP-L-fucose synthase enzymes that are active in vitro, indicating that most GDP-fucose is formed by a de novo pathway that involves the bioconversion of GDP-mannose. Homologues for enzymes involved in a fucose salvage pathway are apparently absent in the P. falciparum genome. This is in agreement with in vivo metabolic labeling experiments showing that fucose is not significantly incorporated by the parasite. Fluorescence microscopy of epitope-tagged versions of P. falciparum GDP-mannose 4,6-dehydratase and GDP-L-fucose synthase expressed in transgenic 3D7 parasites shows that these enzymes localize in the cytoplasm of P. falciparum during the intraerythrocytic developmental cycle. Although the function of fucose in the parasite is not known, the presence of GDP-fucose suggests that the metabolite may be used for further fucosylation reactions. PMID:23615908

  3. Biosynthesis of GDP-fucose and Other Sugar Nucleotides in the Blood Stages of Plasmodium falciparum*

    PubMed Central

    Sanz, Sílvia; Bandini, Giulia; Ospina, Diego; Bernabeu, Maria; Mariño, Karina; Fernández-Becerra, Carmen; Izquierdo, Luis

    2013-01-01

    Carbohydrate structures play important roles in many biological processes, including cell adhesion, cell-cell communication, and host-pathogen interactions. Sugar nucleotides are activated forms of sugars used by the cell as donors for most glycosylation reactions. Using a liquid chromatography-tandem mass spectrometry-based method, we identified and quantified the pools of UDP-glucose, UDP-galactose, UDP-N-acetylglucosamine, GDP-mannose, and GDP-fucose in Plasmodium falciparum intraerythrocytic life stages. We assembled these data with the in silico functional reconstruction of the parasite metabolic pathways obtained from the P. falciparum annotated genome, exposing new active biosynthetic routes crucial for further glycosylation reactions. Fucose is a sugar present in glycoconjugates often associated with recognition and adhesion events. Thus, the GDP-fucose precursor is essential in a wide variety of organisms. P. falciparum presents homologues of GDP-mannose 4,6-dehydratase and GDP-l-fucose synthase enzymes that are active in vitro, indicating that most GDP-fucose is formed by a de novo pathway that involves the bioconversion of GDP-mannose. Homologues for enzymes involved in a fucose salvage pathway are apparently absent in the P. falciparum genome. This is in agreement with in vivo metabolic labeling experiments showing that fucose is not significantly incorporated by the parasite. Fluorescence microscopy of epitope-tagged versions of P. falciparum GDP-mannose 4,6-dehydratase and GDP-l-fucose synthase expressed in transgenic 3D7 parasites shows that these enzymes localize in the cytoplasm of P. falciparum during the intraerythrocytic developmental cycle. Although the function of fucose in the parasite is not known, the presence of GDP-fucose suggests that the metabolite may be used for further fucosylation reactions. PMID:23615908

  4. Cloning and expression of murine enzymes involved in the salvage pathway of GDP-L-fucose.

    PubMed

    Niittymäki, Jaana; Mattila, Pirkko; Roos, Christophe; Huopaniemi, Laura; Sjöblom, Solveig; Renkonen, Risto

    2004-01-01

    In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalyzed by GDP-L-fucose pyrophosphorylase. We report here the cloning and expression of murine L-fucokinase and GDP-L-fucose pyrophosphorylase. Murine L-fucokinase is expressed as two transcripts of 3057 and 3270 base pairs, encoding proteins of 1019 and 1090 amino acids with predicted molecular masses of 111 kDa and 120 kDa respectively. Only the longer splice variant of L-fucokinase was enzymatically active when expressed in COS-7 cells. Murine GDP-L-fucose pyrophosphorylase has an open reading frame of 1773 base pairs encoding a protein of 591 amino acids with a predicted molecular mass of 65.5 kDa. GDP-L-fucose, the reaction product of GDP-L-pyrophosphorylase, was identified by HPLC and MALDI-TOF MS analysis. The tissue distribution of murine L-fucokinase and GDP-L-fucose pyrophosphorylase was investigated by quantitative real time PCR, which revealed high expression of L-fucokinase and GDP-L-fucose pyrophosphorylase in various tissues. The wide expression of both enzymes can also be observed from the large amount of data collected from a number of expressed sequence tag libraries, which indicate that not only the de novo pathway alone, but also the salvage pathway, could have a significant role in the synthesis of GDP-L-fucose in the cytosol. PMID:14686921

  5. U.S. Department of Energy physical protection upgrades at the Latvian Academy of Sciences Nuclear Research Center, Latvia

    SciTech Connect

    Haase, M.; Hine, C.; Robertson, C.

    1996-12-31

    Approximately five years ago, the Safe, Secure Dismantlement program was started between the US and countries of the Former Soviet Union (FSU). The purpose of the program is to accelerate progress toward reducing the risk of nuclear weapons proliferation, including such threats as theft, diversion, and unauthorized possession of nuclear materials. This would be accomplished by strengthening the material protection, control, and accounting systems within the FSU countries. Under the US Department of Energy`s program of providing cooperative assistance to the FSU countries in the areas of Material Protection, Control, and Accounting (MPC and A), the Latvian Academy of Sciences Nuclear Research Center (LNRC) near Riga, Latvia, was identified as a candidate site for a cooperative MPC and A project. The LNRC is the site of a 5-megawatt IRT-C pool-type research reactor. This paper describes: the process involved, from initial contracting to project completion, for the physical protection upgrades now in place at the LNRC; the intervening activities; and a brief overview of the technical aspects of the upgrades.

  6. Brominated, chlorinated and mixed brominated/chlorinated persistent organic pollutants in European eels (Anquilla anquilla) from Latvian lakes.

    PubMed

    Zacs, Dzintars; Rjabova, Jekaterina; Fernandes, Alwyn; Bartkevics, Vadims

    2016-03-01

    Fifty-eight European eel (Anquilla anquilla) specimens collected from five Latvian lakes were investigated for six groups of persistent organic pollutants (POPs), including polychlorinated, polybrominated and mixed bromo-chloro dibenzo-p-dioxins and dibenzofurans (PCDD/DFs, PBDD/DFs and PXDD/DFs), polychlorinated and mixed bromo-chloro biphenyls (PCBs and PXBs) and polybrominated diphenyl ethers (PBDEs). PCDD/DFs and PCBs were found to occur in the range 0.85-15.8 pg Total-WHO2005-TEQ g(-1) f.w., and concentrations in most of the samples were below the maximum levels specified in European Commission Regulation (EU) No. 1259/2011. The summed concentrations of 27 PBDEs (∑PBDE) and 16 non-dioxin-like PCBs (∑NDL-PCB) were in the ranges of 0.28-26.7 and 6.37-320 ng g(-1) f.w., respectively. PBDD/DFs, PXDD/DFs and PXBs show average upper-bound concentrations of 0.05, 0.06 and 0.01 pg TEQ f.w. and collectively contributed 3.4% to the sum TEQ of dioxin-like compounds. The highest contaminant concentrations were measured in samples from lakes near the Baltic Sea and the industrialised area near Riga (Liepajas and Kisezers lakes). A correlation of POP concentration with the length of collected specimens was observed. PMID:26730547

  7. Rapid changes in number of GDP binding sites on brown adipose tissue mitochondria

    SciTech Connect

    Swick, A.G.; Swick, R.W.

    1986-08-01

    (TH)GDP binding to brown adipose tissue (BAT) mitochondria increased more than twofold in 20 min when rats were moved from 27 to 4C. When animals housed at 4C for 2 h were returned to 27C, GDP binding decreased sharply in 20 min and returned to control levels in 2 h. These results are consistent with a rapid unmasking and remasking of GDP bindings sites. GDP binding to mitochondria from warm and acutely cold treated rats was not modified by prior swelling, by freeze-thawing, nor by sonication of the mitochondria before assay. GDP-inhibitable proton conductance, as measured by passive swelling, was unaffected by this brief exposure to cold but more than doubled in rats kept at 4C for 10 days. The authors hypothesize that the rate of GDP-inhibitable swelling may be a reflection of uncoupling protein concentration in the BAT mitochondria, whereas physiological thermogenic activity is more appropriately indicated by GDP binding. The alterations in binding activity appear not to be due to changes in the mitochondrial membrane integrity.

  8. PSMA6 (rs2277460, rs1048990), PSMC6 (rs2295826, rs2295827) and PSMA3 (rs2348071) genetic diversity in Latvians, Lithuanians and Taiwanese

    PubMed Central

    Sjakste, Tatjana; Paramonova, Natalia; Wu, Lawrence Shi-Shin; Zemeckiene, Zivile; Sitkauskiene, Brigita; Sakalauskas, Raimundas; Wang, Jiu-Yao; Sjakste, Nikolajs

    2014-01-01

    PSMA6 (rs2277460, rs1048990), PSMC6 (rs2295826, rs2295827) and PSMA3 (rs2348071) genetic diversity was investigated in 1438 unrelated subjects from Latvia, Lithuania and Taiwan. In general, polymorphism of each individual locus showed tendencies similar to determined previously in HapMap populations. Main differences concern Taiwanese and include presence of rs2277460 rare allele A not found before in Asians and absence of rs2295827 rare alleles homozygotes TT observed in all other human populations. Observed patterns of SNPs and haplotype diversity were compatible with expectation of neutral model of evolution. Linkage disequilibrium between the rs2295826 and rs2295827 was detected to be complete in Latvians and Lithuanians (D´ = 1; r2 = 1) and slightly disrupted in Taiwanese (D´ = 0.978; r2 = 0.901). Population differentiation (FST statistics) was estimated from pairwise population comparisons of loci variability, five locus haplotypes and PSMA6 and PSMC6 two locus haplotypes. Latvians were significantly different from all Asians at each of 5 SNPs and from Lithuanians at the rs1048990 and PSMC6 loci. Lithuanian and Asian populations exhibited similarities at the PSMC6 loci and were different at the PSMA6 and PSMA3 SNPs. Considering five locus haplotypes all European populations were significantly different from Asian; Lithuanian population was different from both Latvian and CEU. Allele specific patterns of transcription factor binding sites and splicing signals were predicted in silico and addressed to eventual functionality of nucleotide substitutions and their potential to be involved in human genome evolution and geographical adaptation. Current study represents a novel step toward a systematic analysis of the proteasomal gene genetic diversity in human populations. PMID:25606411

  9. Metabolic engineering of Corynebacterium glutamicum to produce GDP-L-fucose from glucose and mannose.

    PubMed

    Chin, Young-Wook; Park, Jin-Byung; Park, Yong-Cheol; Kim, Kyoung Heon; Seo, Jin-Ho

    2013-06-01

    Wild-type Corynebacterium glutamicum was metabolically engineered to convert glucose and mannose into guanosine 5'-diphosphate (GDP)-L-fucose, a precursor of fucosyl-oligosaccharides, which are involved in various biological and pathological functions. This was done by introducing the gmd and wcaG genes of Escherichia coli encoding GDP-D-mannose-4,6-dehydratase and GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase, respectively, which are known as key enzymes in the production of GDP-L-fucose from GDP-D-mannose. Coexpression of the genes allowed the recombinant C. glutamicum cells to produce GDP-L-fucose in a minimal medium containing glucose and mannose as carbon sources. The specific product formation rate was much higher during growth on mannose than on glucose. In addition, the specific product formation rate was further increased by coexpressing the endogenous phosphomanno-mutase gene (manB) and GTP-mannose-1-phosphate guanylyl-transferase gene (manC), which are involved in the conversion of mannose-6-phosphate into GDP-D-mannose. However, the overexpression of manA encoding mannose-6-phosphate isomerase, catalyzing interconversion of mannose-6-phosphate and fructose-6-phosphate showed a negative effect on formation of the target product. Overall, coexpression of gmd, wcaG, manB and manC in C. glutamicum enabled production of GDP-L-fucose at the specific rate of 0.11 mg g cell(-1) h(-1). The specific GDP-L-fucose content reached 5.5 mg g cell(-1), which is a 2.4-fold higher than that of the recombinant E. coli overexpressing gmd, wcaG, manB and manC under comparable conditions. Well-established metabolic engineering tools may permit optimization of the carbon and cofactor metabolisms of C. glutamicum to further improve their production capacity. PMID:23404100

  10. Identification and characterization of GDP-d-mannose 4,6-dehydratase and GDP-l-fucose snthetase in a GDP-l-fucose biosynthetic gene cluster from Helicobacter pylori.

    PubMed

    Wu, B; Zhang, Y; Wang, P G

    2001-07-13

    In this study two open reading frames, namely HP0044 and HP0045 from H. pylori, were cloned and overexpressed in E. coli. The two recombinant proteins were demonstrated to have GDP-d-mannose 4,6-dehydratase (GMD) and GDP-l-fucose synthetase (GFS) activities, respectively. The recombinant GMD was a tetramer and had an optimum pH of 6.5. Exogenous NADP(+) was essential for its activity. The K(m) and K(cat) for GDP-d-mannose were 117.3 microM and 0.27 s(-1), respectively. The recombinant GFS was a homodimer with an optimum pH of 8.0. The K(m) and K(cat) for GDP-4-keto-6-deoxy-d-mannose were 64.08 microM and 0.75 s(-1), respectively. It can use both NADPH and NADH, but less efficient with the latter. Amino acid sequence alignment and phylogenetic analysis showed that H. pylori GFS was highly homologous to the GFS of E. coli O111 and both of them were located on a separate phylogenetic branch from other GFS. The unique clustering and origin of the two genes were also discussed. PMID:11444851

  11. Cloning, expression, and mapping of GDP-D-mannose pyrophosphorylase cDNA from tomato (Lycopersicon esculentum).

    PubMed

    Zou, Li-Ping; Li, Han-Xia; Ouyang, Bo; Zhang, Jun-Hong; Ye, Zhi-Biao

    2006-08-01

    GDP-D-mannose pyrophosphorylase (GMP, EC 2.7.7.22) catalyzes the synthesis of GDP-D-mannose and represents the first committed step in plant ascorbic acid biosynthesis. Using potato GMP cDNA sequence as a querying probe, 65 highly homologous tomato ESTs were obtained from dbEST of GenBank and the putative cDNA sequence of tomato GMP was assembled. The full-length GMP cDNA of tomato was cloned by RACE-PCR with primers designed according to the assembled cDNA sequence. The full-length cDNA sequence contained a complete open reading frame (ORF) of 1,086 bp, which encoded 361 amino acid residues. This gene was designated as LeGMP (GenBank accession No. AY605668). Homology analysis of LeGMP showed a 96% identity with potato GMP and the deduced amino acid showed 99%, 97%, 91% and 89% homology with GMP from potato, tobacco, alfalfa and Arabidopsis thaliana, respectively. Northern blot analysis showed that LeGMP was constitutively expressed in roots, stems, leaves, flowers and fruits of tomato; but the expression levels varied. LeGMP was mapped to 3-D using 75 tomato introgression lines (ILs), each containing a single homozygous RFLP-defined chromosome segment from the green-fruited species Lycopersicon pennellii. PMID:16939010

  12. The Arabidopsis Golgi-localized GDP-L-fucose transporter is required for plant development

    PubMed Central

    Rautengarten, Carsten; Ebert, Berit; Liu, Lifeng; Stonebloom, Solomon; Smith-Moritz, Andreia M.; Pauly, Markus; Orellana, Ariel; Scheller, Henrik Vibe; Heazlewood, Joshua L.

    2016-01-01

    Nucleotide sugar transport across Golgi membranes is essential for the luminal biosynthesis of glycan structures. Here we identify GDP-fucose transporter 1 (GFT1), an Arabidopsis nucleotide sugar transporter that translocates GDP-L-fucose into the Golgi lumen. Using proteo-liposome-based transport assays, we show that GFT preferentially transports GDP-L-fucose over other nucleotide sugars in vitro, while GFT1-silenced plants are almost devoid of L-fucose in cell wall-derived xyloglucan and rhamnogalacturonan II. Furthermore, these lines display reduced L-fucose content in N-glycan structures accompanied by severe developmental growth defects. We conclude that GFT1 is the major nucleotide sugar transporter for import of GDP-L-fucose into the Golgi and is required for proper plant growth and development. PMID:27381418

  13. The Arabidopsis Golgi-localized GDP-L-fucose transporter is required for plant development.

    PubMed

    Rautengarten, Carsten; Ebert, Berit; Liu, Lifeng; Stonebloom, Solomon; Smith-Moritz, Andreia M; Pauly, Markus; Orellana, Ariel; Scheller, Henrik Vibe; Heazlewood, Joshua L

    2016-01-01

    Nucleotide sugar transport across Golgi membranes is essential for the luminal biosynthesis of glycan structures. Here we identify GDP-fucose transporter 1 (GFT1), an Arabidopsis nucleotide sugar transporter that translocates GDP-L-fucose into the Golgi lumen. Using proteo-liposome-based transport assays, we show that GFT preferentially transports GDP-L-fucose over other nucleotide sugars in vitro, while GFT1-silenced plants are almost devoid of L-fucose in cell wall-derived xyloglucan and rhamnogalacturonan II. Furthermore, these lines display reduced L-fucose content in N-glycan structures accompanied by severe developmental growth defects. We conclude that GFT1 is the major nucleotide sugar transporter for import of GDP-L-fucose into the Golgi and is required for proper plant growth and development. PMID:27381418

  14. Analysis of Latvian familial melanoma patients shows novel variants in the noncoding regions of CDKN2A and that the CDK4 mutation R24H is a founder mutation.

    PubMed

    Veinalde, Rūta; Ozola, Aija; Azarjana, Kristīne; Molven, Anders; Akslen, Lars A; Doniņa, Simona; Proboka, Guna; Cēma, Ingrīda; Baginskis, Ainārs; Pjanova, Dace

    2013-06-01

    Hereditary cutaneous melanoma is associated with mutations in the high-risk CDKN2A gene in about 40% of melanoma-prone families. Mutations in the CDK4 gene are the cause in only a few pedigrees. In this study, we analyzed 20 Latvian familial melanoma probands and carried out a comprehensive analysis of CDKN2A including sequencing of its promoter/intronic regions and deletion screening. We also analyzed the critical second exon of the CDK4 gene. One novel intronic variant (IVS2+82C>T) of the CDKN2A gene and a small deletion (c.-20677_-20682delGTACGC) in its promoter region were found. Genotyping of the novel variants in larger melanoma and control groups indicated that the deletion increases the risk of melanoma (odds ratio=6.353, 95% confidence interval: 1.34-30.22, P=0.0168). The CDK4 gene analysis showed a Latvian melanoma family with the mutation R24H carried on the same haplotype as in two previously described Latvian CDK4-positive families. Our study suggests that the main risk gene in Latvian families with a strong family history of melanoma is CDK4 and that most of the other cases analyzed could be sporadic or associated with low-penetrance risk genes. PMID:23546221

  15. Crystal structure of a tetrameric GDP-D-mannose 4,6-dehydratase from a bacterial GDP-D-rhamnose biosynthetic pathway

    SciTech Connect

    Webb, N.A.; Mulichak, A.M.; Lam, J.S.; Rocchetta, H.L.; Garavito, R.M.

    2010-03-08

    D-Rhamnose is a rare 6-deoxy monosaccharide primarily found in the lipopolysaccharide of pathogenic bacteria, where it is involved in host-bacterium interactions and the establishment of infection. The biosynthesis of D-rhamnose proceeds through the conversion of GDP-D-mannose by GDP-D-mannose 4,6-dehydratase (GMD) to GDP-4-keto-6-deoxymannose, which is subsequently reduced to GDP-D-rhamnose by a reductase. We have determined the crystal structure of GMD from Pseudomonas aeruginosa in complex with NADPH and GDP. GMD belongs to the NDP-sugar modifying subfamily of the short-chain dehydrogenase/reductase (SDR) enzymes, all of which exhibit bidomain structures and a conserved catalytic triad (Tyr-XXX-Lys and Ser/Thr). Although most members of this enzyme subfamily display homodimeric structures, this bacterial GMD forms a tetramer in the same fashion as the plant MUR1 from Arabidopsis thaliana. The cofactor binding sites are adjoined across the tetramer interface, which brings the adenosyl phosphate moieties of the adjacent NADPH molecules to within 7 {angstrom} of each other. A short peptide segment (Arg35-Arg43) stretches into the neighboring monomer, making not only protein-protein interactions but also hydrogen bonding interactions with the neighboring cofactor. The interface hydrogen bonds made by the Arg35-Arg43 segment are generally conserved in GMD and MUR1, and the interacting residues are highly conserved among the sequences of bacterial and eukaryotic GMDs. Outside of the Arg35-Arg43 segment, residues involved in tetrameric contacts are also quite conserved across different species. These observations suggest that a tetramer is the preferred, and perhaps functionally relevant, oligomeric state for most bacterial and eukaryotic GMDs.

  16. Different Effects of Guanine Nucleotides (GDP and GTP) on Protein-Mediated Mitochondrial Proton Leak

    PubMed Central

    Woyda-Ploszczyca, Andrzej M.; Jarmuszkiewicz, Wieslawa

    2014-01-01

    In this study, we compared the influence of GDP and GTP on isolated mitochondria respiring under conditions favoring oxidative phosphorylation (OXPHOS) and under conditions excluding this process, i.e., in the presence of carboxyatractyloside, an adenine nucleotide translocase inhibitor, and/or oligomycin, an FOF1-ATP synthase inhibitor. Using mitochondria isolated from rat kidney and human endothelial cells, we found that the action of GDP and GTP can differ diametrically depending on the conditions. Namely, under conditions favoring OXPHOS, both in the absence and presence of linoleic acid, an activator of uncoupling proteins (UCPs), the addition of 1 mM GDP resulted in the state 4 (non-phosphorylating respiration)-state 3 (phosphorylating respiration) transition, which is characteristic of ADP oxidative phosphorylation. In contrast, the addition of 1 mM GTP resulted in a decrease in the respiratory rate and an increase in the membrane potential, which is characteristic of UCP inhibition. The stimulatory effect of GDP, but not GTP, was also observed in inside-out submitochondrial particles prepared from rat kidney mitochondria. However, the effects of GDP and GTP were more similar in the presence of OXPHOS inhibitors. The importance of these observations in connection with the action of UCPs, adenine nucleotide translocase (or other carboxyatractyloside-sensitive carriers), carboxyatractyloside- and purine nucleotide-insensitive carriers, as well as nucleoside-diphosphate kinase (NDPK) are considered. Because the measurements favoring oxidative phosphorylation better reflect in vivo conditions, our study strongly supports the idea that GDP cannot be considered a significant physiological inhibitor of UCP. Moreover, it appears that, under native conditions, GTP functions as a more efficient UCP inhibitor than GDP and ATP. PMID:24904988

  17. Content of polychlorinated dibenzo-p-dioxins, dibenzofurans and dioxin-like polychlorinated biphenyls in fish from Latvian lakes.

    PubMed

    Zacs, D; Bartkevics, V; Viksna, A

    2013-04-01

    Seventeen polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDD/PCDFs) of the highest priority as well as twelve dioxin-like polychlorinated biphenyls (dl-PCBs) were analyzed in the muscle tissues of the following freshwater fish species sampled from eleven Latvian freshwater lakes: perch (Perca flavescens), carp (Cyprinus carpio), eel (Anguilla rostrata), bream (Abramis brama), chub (Leuciscus cephalus), pike (Esox lucius), sheatfish (Silurus glanis) and roach (Rutilus). To analyze the selected persistent organic pollutants in fish matrices, an optimization of EPA-1613 and EPA-1668A clean-up procedures was carried out, followed by validation of the analytical procedure according to Commission Regulation (EC) No 1883/2006. The adopted analytical procedure was in compliance with requirements of the more recent Commission Regulation (EU) No 252/2012. Modifications of carbon column chromatography clean-up and separation steps were used for treatment of the fish samples. Other clean-up procedure stages were performed according to the methods EPA-1613 and EPA-1668A and involved gel permeation chromatography (GPC), as well as manual acidic silica and Florisil column chromatography for purification and fractionation of the samples. An isotope dilution method was used for the qualitative and quantitative determination of individual congeners. Analytes of interest were separated and detected using gas chromatography - high resolution mass spectrometry. The concentration of PCDD/PCDFs and dl-PCBs in freshwater fish and eel samples ranged from 0.05 to 8.0 pg WHO(1998)-PCDD/PCDF-PCB-TEQ g(-1) fresh weight. These levels are below the EU maximum permissible limits although calculation of the content of these compounds relative to the weight of fat shows contamination levels similar to those found in Baltic herring and sprats, that are known to be highly contaminated. A difference in congener pattern between the Baltic Sea fish and freshwater fish was detected

  18. Modified GDP through health cost analysis of air pollution: The case of Turkey

    SciTech Connect

    Zaim, K.K.

    1999-02-01

    Economic growth and performance is monitored through the gross domestic product (GDP) of a nation. It has long been recognized that the traditionally computed GDP does not account for gains and losses observed due to the consumption of natural resources and environmental services. Hence, the objective of this study is to modify the Turkish GDP by taking social cost associated with air pollution into consideration. To this end health benefits and economic costs of air-quality improvement are estimated. The computations are based on the dose-response coefficients reported in several studies. The results indicate that a decrease in PM{sub 10} and SO{sub 2} levels to the WHO guideline would have resulted in a total of 48.309 {times} 10{sup 10} and 153.38 {times} 10{sup 10} Turkish lira savings in 1990 and 1993, respectively. These correspond to 0.12% and 0.08% of 1990 and 1993 GDPs, respectively.

  19. Systems GMM estimates of the health care spending and GDP relationship: a note.

    PubMed

    Kumar, Saten

    2013-06-01

    This paper utilizes the systems generalized method of moments (GMM) [Arellano and Bover (1995) J Econometrics 68:29-51; Blundell and Bond (1998) J Econometrics 87:115-143], and panel Granger causality [Hurlin and Venet (2001) Granger Causality tests in panel data models with fixed coefficients. Mime'o, University Paris IX], to investigate the health care spending and gross domestic product (GDP) relationship for organisation for economic co-operation and development countries over the period 1960-2007. The system GMM estimates confirm that the contribution of real GDP to health spending is significant and positive. The panel Granger causality tests imply that a bi-directional causality exists between health spending and GDP. To this end, policies aimed at raising health spending will eventually improve the well-being of the population in the long run. PMID:22581267

  20. Micronutrient deficiencies in early childhood can lower a country's GDP: The Myanmar example.

    PubMed

    Win, Aung Zaw

    2016-01-01

    Myanmar (Burma) is a developing country in South East Asia. While Myanmar is among the 20 countries where 80% of the world's malnourished children live, its military consumes the majority of the national budget. Children who are malnourished between conception and age two are at high risk for impaired physical and mental development, which adversely affects the country's productivity and growth. Myanmar is facing three major micronutrient deficiencies which are iodine, iron and vitamin A deficiencies. The three micronutrient deficiencies can cost about 2.4% of the country's GDP. Children are the future of Myanmar and persistent micronutrient deficiencies will hamper its economic growth and lower its GDP. PMID:26421387

  1. Sustainable Use Of Macro-Algae For Biogas Production In Latvian Conditions: A Preliminary Study Through An Integrated Mca And Lca Approach

    NASA Astrophysics Data System (ADS)

    Pastare, Laura; Romagnoli, Francesco; Lauka, Dace; Dzene, Ilze; Kuznecova, Tatjana

    2014-12-01

    The study focuses on sustainability evaluation of an algae-based energy system in Latvia with a holistic and integrated approach of multi-criteria analysis combined with life cycle assessment (including a practical side - biogas yield experiments of locally available algae). The study shows potential for sustainable use of algae in Latvian conditions and thus that algal biomass can be utilized for the production of biogas. The most sustainable and feasible scenario of using algae for biogas energy production foresees the collection of algae biomass from natural water bodies. Important beneficial effects through the use of algae are related to avoiding global warming potential (GWP) and eutrophication impacts. Biogas batch experiments carried out with the local macrophyte C.demersum have shown a methane yield of 554 l CH4/kg VS.

  2. Assessment of the Present and Future Offshore Wind Power Potential: A Case Study in a Target Territory of the Baltic Sea Near the Latvian Coast

    PubMed Central

    Teilans, Artis

    2013-01-01

    Offshore wind energy development promises to be a significant domestic renewable energy source in Latvia. The reliable prediction of present and future wind resources at offshore sites is crucial for planning and selecting the location for wind farms. The overall goal of this paper is the assessment of offshore wind power potential in a target territory of the Baltic Sea near the Latvian coast as well as the identification of a trend in the future wind energy potential for the study territory. The regional climate model CLM and High Resolution Limited Area Model (Hirlam) simulations were used to obtain the wind climatology data for the study area. The results indicated that offshore wind energy is promising for expanding the national electricity generation and will continue to be a stable resource for electricity generation in the region over the 21st century. PMID:23983619

  3. Assessment of the present and future offshore wind power potential: a case study in a target territory of the Baltic Sea near the Latvian coast.

    PubMed

    Lizuma, Lita; Avotniece, Zanita; Rupainis, Sergejs; Teilans, Artis

    2013-01-01

    Offshore wind energy development promises to be a significant domestic renewable energy source in Latvia. The reliable prediction of present and future wind resources at offshore sites is crucial for planning and selecting the location for wind farms. The overall goal of this paper is the assessment of offshore wind power potential in a target territory of the Baltic Sea near the Latvian coast as well as the identification of a trend in the future wind energy potential for the study territory. The regional climate model CLM and High Resolution Limited Area Model (Hirlam) simulations were used to obtain the wind climatology data for the study area. The results indicated that offshore wind energy is promising for expanding the national electricity generation and will continue to be a stable resource for electricity generation in the region over the 21st century. PMID:23983619

  4. An Empirical Analysis of Differences in GDP per Capita and the Role of Human Capital

    ERIC Educational Resources Information Center

    Sfakianakis, George; Magoutas, Anastasios I.; Georgopoulos, Demosthenes

    2010-01-01

    Using a generalized production function approach and insights from empirical research on the determinants of growth, this paper assesses the relative importance of specific factors in explaining differences in the levels of per capita GDP. Emphasis is placed on education, physical capital accumulation, the share of the public sector in economic…

  5. Identification of a GDP-mannose pyrophosphorylase gene from Sulfolobus solfataricus.

    PubMed

    Sacchetti, Silvana; Bartolucci, Simonetta; Rossi, Mosè; Cannio, Raffaele

    2004-05-12

    An open reading frame (ORF) encoding a putative GDP-mannose pyrophosphorylase (SsoGMPP) was identified on the genome sequence of Sulfolobus solfataricus P2, the predicted gene product showing high amino acid sequence homology to several archaeal, bacterial, and eukaryal GDP-mannose pyrophosphorylases such as guanidine diphosphomannose pyrophosphorylases (GMPPs) from Saccharomyces cerevisiae and Arabidopsis thaliana. The sequence was PCR amplified from genomic DNA of S. solfataricus P2 and heterologous gene expression obtained as a fusion to glutathione S-transferase in Escherichia coli, under conditions suitable to reduce the formation of inclusion bodies. Specific assays performed at 60 degrees C revealed the presence of the archaeal synthesizing GDP-mannose enzyme activity in the cell extracts of the transformed E. coli. As a positive control, the same assays were performed at the mesophilic enzyme optimum temperature on the already characterized yeast recombinant GMPP. The recombinant protein was purified to homogeneity by glutathione sepharose affinity chromatography and its thermophilic nature could be verified. The enzyme was definitively identified by demonstrating its capability to catalyze also the reverse reaction of pyrophosphorolysis and, most interestingly, its high specificity for synthesizing GDP-mannose. PMID:15145064

  6. Hydrogen bonding in the mechanism of GDP-mannose mannosyl hydrolase

    NASA Astrophysics Data System (ADS)

    Mildvan, A. S.; Xia, Z.; Azurmendi, H. F.; Legler, P. M.; Balfour, M. R.; Lairson, L. L.; Withers, S. G.; Gabelli, S. B.; Bianchet, M. A.; Amzel, L. M.

    2006-06-01

    GDP-mannose mannosyl hydrolase (GDPMH) from E. coli catalyzes the hydrolysis of GDP-α- D-sugars to GDP and β- D-sugars by nucleophilic substitution with inversion at the anomeric C1 of the sugar, with general base catalysis by His-124. The 1.3 Å X-ray structure of the GDPMH-Mg 2+-GDP complex was used to model the complete substrate, GDP-mannose into the active site. The substrate is linked to the enzyme by 12 hydrogen bonds, as well as by the essential Mg 2+. In addition, His-124 was found to participate in a hydrogen bonded triad: His-124-NδH⋯Tyr-127-OH⋯Pro-120(C dbnd6 O). The contributions of these hydrogen bonds to substrate binding and to catalysis were investigated by site-directed mutagenesis. The hydrogen bonded triad detected in the X-ray structure was found to contribute little to catalysis since the Y127F mutation of the central residue shows only 2-fold decreases in both kcat and Km. The GDP leaving group is activated by the essential Mg 2+ which contributes at least 10 5-fold to kcat, and by nine hydrogen bonds, including those from Tyr-103, Arg-37, Arg-52, and Arg-65 (via an intervening water), each of which contribute factors to kcat ranging from 24- to 309-fold. Both Arg-37 and Tyr-103 bind the β-phosphate of the leaving GDP and are only 5.0 Å apart. Accordingly, the R37Q/Y103F double mutant shows partially additive effects of the two single mutants on kcat, indicating cooperativity of Arg-37 and Tyr-103 in promoting catalysis. The extensive activation of the GDP leaving group suggests a mechanism with dissociative character with a cationic oxocarbenium-like transition state and a half-chair conformation of the sugar ring, as found with glycosidase enzymes. Accordingly, Asp-22 which contributes 10 2.1- to 10 2.6-fold to kcat, is positioned to both stabilize a developing cationic center at C1 and to accept a hydrogen bond from the C2-OH of the mannosyl group, and His-88, which contributes 10 2.3-fold to kcat, is positioned to accept

  7. A Second GDP-l-galactose Phosphorylase in Arabidopsis en Route to Vitamin C

    PubMed Central

    Linster, Carole L.; Adler, Lital N.; Webb, Kristofor; Christensen, Kathryn C.; Brenner, Charles; Clarke, Steven G.

    2008-01-01

    The Arabidopsis thaliana VTC2 gene encodes an enzyme that catalyzes the conversion of GDP-l-galactose to l-galactose 1-phosphate in the first committed step of the Smirnoff-Wheeler pathway to plant vitamin C synthesis. Mutations in VTC2 had previously been found to lead to only partial vitamin C deficiency. Here we show that the Arabidopsis gene At5g55120 encodes an enzyme with high sequence identity to VTC2. Designated VTC5, this enzyme displays substrate specificity and enzymatic properties that are remarkably similar to those of VTC2, suggesting that it may be responsible for residual vitamin C synthesis in vtc2 mutants. The exact nature of the reaction catalyzed by VTC2/VTC5 is controversial because of reports that kiwifruit and Arabidopsis VTC2 utilize hexose 1-phosphates as phosphorolytic acceptor substrates. Using liquid chromatography-mass spectroscopy and a VTC2-H238N mutant, we provide evidence that the reaction proceeds through a covalent guanylylated histidine residue within the histidine triad motif. Moreover, we show that both the Arabidopsis VTC2 and VTC5 enzymes catalyze simple phosphorolysis of the guanylylated enzyme, forming GDP and l-galactose 1-phosphate from GDP-l-galactose and phosphate, with poor reactivity of hexose 1-phosphates as phosphorolytic acceptors. Indeed, the endogenous activities from Japanese mustard spinach, lemon, and spinach have the same substrate requirements. These results show that Arabidopsis VTC2 and VTC5 proteins and their homologs in other plants are enzymes that guanylylate a conserved active site His residue with GDP-l-galactose, forming l-galactose 1-phosphate for vitamin C synthesis, and regenerate the enzyme with phosphate to form GDP. PMID:18463094

  8. The burden of natural and technological disaster-related mortality on gross domestic product (GDP) in the WHO African region.

    PubMed

    Kirigia, Joses M; Sambo, Luis G; Aldis, W; Mwabu, Germano M

    2002-01-01

    The WHO Africa region has the highest disaster mortality rate compared to the other five regions of the organization. Those deaths are hypothesized to have significantly negative effect on per capita gross domestic product (GDP). The objective of this study was to estimate the loss in GDP attributable to natural and technological disaster-related mortality in the WHO African Region. We estimated the impact of disaster-related mortality on GDP using double-log econometric model and cross-sectional data (from the UNDP and the World Bank publications) on 45 out of 46 countries in the WHO African Region. The coefficients for capital (K), educational enrolment (EN), life expectancy (LE) and exports (X) had a positive sign; while imports (M) and disaster mortality (DS) were found to impact negatively on GDP. The abovementioned explanatory variables were found to have statistically significant effect on GDP at 5% level in a t-distribution test. Disaster mortality of a single person was found to reduce GDP by US$0.018. We have demonstrated that disaster mortality has a significant negative effect on GDP. Thus, as policy-makers strive to increase GDP through capital investment, export promotion and increase in educational enrolment, they should always recall that investments in strengthening national capacity to mitigate the effects of national disasters expeditiously and effectively shall yield significant economic returns. PMID:17298162

  9. Dimensions of Well-Being in EU Regions: Do GDP and Unemployment Tell Us All We Need to Know?

    ERIC Educational Resources Information Center

    Stewart, Kitty

    2005-01-01

    Unemployment and GDP are widely used as proxies for a broader concept of well-being in the European Union, especially at regional level. This paper asks whether such an approach is reasonable. Using data from a range of sources, it examines the association between unemployment, GDP and a number of alternative well-being indicators in five…

  10. Varying constants quantum cosmology

    SciTech Connect

    Leszczyńska, Katarzyna; Balcerzak, Adam; Dabrowski, Mariusz P. E-mail: abalcerz@wmf.univ.szczecin.pl

    2015-02-01

    We discuss minisuperspace models within the framework of varying physical constants theories including Λ-term. In particular, we consider the varying speed of light (VSL) theory and varying gravitational constant theory (VG) using the specific ansätze for the variability of constants: c(a) = c{sub 0} a{sup n} and G(a)=G{sub 0} a{sup q}. We find that most of the varying c and G minisuperspace potentials are of the tunneling type which allows to use WKB approximation of quantum mechanics. Using this method we show that the probability of tunneling of the universe ''from nothing'' (a=0) to a Friedmann geometry with the scale factor a{sub t} is large for growing c models and is strongly suppressed for diminishing c models. As for G varying, the probability of tunneling is large for G diminishing, while it is small for G increasing. In general, both varying c and G change the probability of tunneling in comparison to the standard matter content (cosmological term, dust, radiation) universe models.

  11. Identification and Characterization of GONST1, a Golgi-Localized GDP-Mannose Transporter in Arabidopsis

    PubMed Central

    Baldwin, Timothy C.; Handford, Michael G.; Yuseff, Maria-Isabel; Orellana, Ariel; Dupree, Paul

    2001-01-01

    Transport of nucleotide sugars across the Golgi apparatus membrane is required for the luminal synthesis of a variety of plant cell surface components. We identified an Arabidopsis gene encoding a nucleotide sugar transporter (designated GONST1) that we have shown by transient gene expression to be localized to the Golgi. GONST1 complemented a GDP-mannose transport–defective yeast mutant (vrg4-2), and Golgi-rich vesicles from the complemented strain displayed increased GDP-mannose transport activity. GONST1 promoter::β-glucuronidase studies suggested that this gene is expressed ubiquitously. The identification of a Golgi-localized nucleotide sugar transporter from plants will allow the study of the importance of this class of proteins in the synthesis of plant cell surface components such as cell wall polysaccharides. PMID:11595802

  12. A hybrid group method of data handling with discrete wavelet transform for GDP forecasting

    NASA Astrophysics Data System (ADS)

    Isa, Nadira Mohamed; Shabri, Ani

    2013-09-01

    This study is proposed the application of hybridization model using Group Method of Data Handling (GMDH) and Discrete Wavelet Transform (DWT) in time series forecasting. The objective of this paper is to examine the flexibility of the hybridization GMDH in time series forecasting by using Gross Domestic Product (GDP). A time series data set is used in this study to demonstrate the effectiveness of the forecasting model. This data are utilized to forecast through an application aimed to handle real life time series. This experiment compares the performances of a hybrid model and a single model of Wavelet-Linear Regression (WR), Artificial Neural Network (ANN), and conventional GMDH. It is shown that the proposed model can provide a promising alternative technique in GDP forecasting.

  13. National GDP, Science Interest and Science Achievement: A Person-by-Nation Interaction

    PubMed Central

    Drob, Elliot M. Tucker; Cheung, Amanda K.; Briley, Daniel A.

    2014-01-01

    Maximizing science achievement is a critical target of educational policy, with important implications for national and international economic and technological competitiveness. Previous research has identified both science interest and socioeconomic status (SES) as robust predictors of science achievement, but little research has examined their joint effects. In a dataset drawn from approximately 400,000 high school students from 57 countries, we document large interest by SES and interest by per capita gross domestic product (GDP) interactions in the prediction of science achievement. Student interest in science is a substantially stronger predictor of science achievement in higher socioeconomic contexts and in higher GDP nations. Our results are consistent with the hypothesis that, in higher opportunity contexts, motivational factors play larger roles in learning and achievement. They add to the growing body of evidence indicating that substantial cross national differences in psychological effect sizes are not simply a logical possibility, but in many cases, an empirical reality. PMID:25304883

  14. The impact of the GDP and population on trade of COMESA using panel data approach

    NASA Astrophysics Data System (ADS)

    Hamzalouh, Lubna; Ismail, Mohd. Tahir; Rahman, Rosmanjawati Abd.

    2016-06-01

    The general consensus from a plethora of literature is that the estimates of variability for analyzing panel data models are precise and achieve accurate inferences. Panel data can also be used to control for heterogeneity through several models, such as the fixed effect model (FEM), the random effects model (REM), and the pooled regression model(PM). This study aims to uncover the increases in trade volume among the member countries of Common Market for Eastern and Southern Africa (COMESA) and identify the important factors that affect COMESA trade using panel data models. In addition, this study intends to investigate the independent variables and their effect on the export and import of COMESA member countries. Results show that in FEM, an increase in GDP leads to a 65% increase in imports, and in REM, an increase in GDP leads to an 86% increase in exports. These findings suggest that FEM and REM are appropriate for explaining the imports and exports of COMESA, respectively.

  15. Health Care Expenditure and GDP in Oil Exporting Countries: Evidence from OPEC Data, 1995-2012

    PubMed Central

    Fazaeli, Ali Akbar; Ghaderi, Hossein; Salehi, Masoud; Fazaeli, Ali Reza

    2016-01-01

    Background: There is a large body of literature examining income in relation to health expenditures. The share of expenditures in health sector from GDP in developed countries is often larger than in non-developed countries, suggesting that as the level of economic growth increases, health spending increase, too. Objectives: This paper estimates long-run relationships between health expenditures and GDP based on panel data of a sample of 12 countries of the Organization of the Petroleum Exporting Countries (OPEC), using data for the period 1995-2012. Patients & Methods: We use panel data unit root tests, cointegration analysis and ECM model to find long-run and short-run relation. This study examines whether health is a luxury or a necessity for OPEC countries within a unit root and cointegration framework. Results: Panel data analysis indicates that health expenditures and GDP are co-integrated and have Engle and Granger causality. In addition, in oil countries that have oil export income, the share of government expenditures in the health sector is often greater than in private health expenditures similar developed countries. Conclusions: The findings verify that health care is not a luxury good and income has a robust relationship to health expenditures in OPEC countries. PMID:26383195

  16. The Rabies Virus L Protein Catalyzes mRNA Capping with GDP Polyribonucleotidyltransferase Activity.

    PubMed

    Ogino, Minako; Ito, Naoto; Sugiyama, Makoto; Ogino, Tomoaki

    2016-01-01

    The large (L) protein of rabies virus (RABV) plays multiple enzymatic roles in viral RNA synthesis and processing. However, none of its putative enzymatic activities have been directly demonstrated in vitro. In this study, we expressed and purified a recombinant form of the RABV L protein and verified its guanosine 5'-triphosphatase and GDP polyribonucleotidyltransferase (PRNTase) activities, which are essential for viral mRNA cap formation by the unconventional mechanism. The RABV L protein capped 5'-triphosphorylated but not 5'-diphosphorylated RABV mRNA-start sequences, 5'-AACA(C/U), with GDP to generate the 5'-terminal cap structure G(5')ppp(5')A. The 5'-AAC sequence in the substrate RNAs was found to be strictly essential for RNA capping with the RABV L protein. Furthermore, site-directed mutagenesis showed that some conserved amino acid residues (G1112, T1170, W1201, H1241, R1242, F1285, and Q1286) in the PRNTase motifs A to E of the RABV L protein are required for cap formation. These findings suggest that the putative PRNTase domain in the RABV L protein catalyzes the rhabdovirus-specific capping reaction involving covalent catalysis of the pRNA transfer to GDP, thus offering this domain as a target for developing anti-viral agents. PMID:27213429

  17. The Rabies Virus L Protein Catalyzes mRNA Capping with GDP Polyribonucleotidyltransferase Activity

    PubMed Central

    Ogino, Minako; Ito, Naoto; Sugiyama, Makoto; Ogino, Tomoaki

    2016-01-01

    The large (L) protein of rabies virus (RABV) plays multiple enzymatic roles in viral RNA synthesis and processing. However, none of its putative enzymatic activities have been directly demonstrated in vitro. In this study, we expressed and purified a recombinant form of the RABV L protein and verified its guanosine 5′-triphosphatase and GDP polyribonucleotidyltransferase (PRNTase) activities, which are essential for viral mRNA cap formation by the unconventional mechanism. The RABV L protein capped 5′-triphosphorylated but not 5′-diphosphorylated RABV mRNA-start sequences, 5′-AACA(C/U), with GDP to generate the 5′-terminal cap structure G(5′)ppp(5′)A. The 5′-AAC sequence in the substrate RNAs was found to be strictly essential for RNA capping with the RABV L protein. Furthermore, site-directed mutagenesis showed that some conserved amino acid residues (G1112, T1170, W1201, H1241, R1242, F1285, and Q1286) in the PRNTase motifs A to E of the RABV L protein are required for cap formation. These findings suggest that the putative PRNTase domain in the RABV L protein catalyzes the rhabdovirus-specific capping reaction involving covalent catalysis of the pRNA transfer to GDP, thus offering this domain as a target for developing anti-viral agents. PMID:27213429

  18. Time-varying BRDFs.

    PubMed

    Sun, Bo; Sunkavalli, Kalyan; Ramamoorthi, Ravi; Belhumeur, Peter N; Nayar, Shree K

    2007-01-01

    The properties of virtually all real-world materials change with time, causing their bidirectional reflectance distribution functions (BRDFs) to be time varying. However, none of the existing BRDF models and databases take time variation into consideration; they represent the appearance of a material at a single time instance. In this paper, we address the acquisition, analysis, modeling, and rendering of a wide range of time-varying BRDFs (TVBRDFs). We have developed an acquisition system that is capable of sampling a material's BRDF at multiple time instances, with each time sample acquired within 36 sec. We have used this acquisition system to measure the BRDFs of a wide range of time-varying phenomena, which include the drying of various types of paints (watercolor, spray, and oil), the drying of wet rough surfaces (cement, plaster, and fabrics), the accumulation of dusts (household and joint compound) on surfaces, and the melting of materials (chocolate). Analytic BRDF functions are fit to these measurements and the model parameters' variations with time are analyzed. Each category exhibits interesting and sometimes nonintuitive parameter trends. These parameter trends are then used to develop analytic TVBRDF models. The analytic TVBRDF models enable us to apply effects such as paint drying and dust accumulation to arbitrary surfaces and novel materials. PMID:17356224

  19. Influence of GDP on interaction of transducin with cyclic nucleotide phosphodiesterase and rhodopsin from bovine retinal rods

    SciTech Connect

    Rybin, V.O.

    1986-12-20

    In the presence of guanine nucleotides and rhodopsin-containing membranes from bovine retinal rod outer segments transducin stimulates light-sensitive cyclic nucleotide phosphodiesterase 5.5- to 7-fold. The activation constant (K/sub act/) for GTP and Gpp(NH)p is equal to 0.25 ..mu..M, while that for GDP and GDP..beta..S is 14 and 110 ..mu..M, respectively. GDP free of admixtures of other nucleotides does not activate phosphodiesterase at concentrations up to 1 mM, but is bound to transducin and inhibits the Gpp(NH)p-dependent activation of phosphodiesterase. The nature of the interaction of transducin with depolarized rhodopsin also depends on the type of guanine nucleotide bound: in the presence of GDP rhodopsin-containing membranes bind 70-100% of the transducin, whereas in the presence of Gpp(NH)p only 13% of the protein is bound. The data obtained indicate that GDP and GTP convert transducin to two different functional states: the transducin-GTP complex is bound to phosphodiesterase and activates it, while the transducin-GDP complex is bound primarily to rhodopsin.

  20. A GDP-driven model for the binary and weighted structure of the International Trade Network

    NASA Astrophysics Data System (ADS)

    Almog, Assaf; Squartini, Tiziano; Garlaschelli, Diego

    2015-01-01

    Recent events such as the global financial crisis have renewed the interest in the topic of economic networks. One of the main channels of shock propagation among countries is the International Trade Network (ITN). Two important models for the ITN structure, the classical gravity model of trade (more popular among economists) and the fitness model (more popular among networks scientists), are both limited to the characterization of only one representation of the ITN. The gravity model satisfactorily predicts the volume of trade between connected countries, but cannot reproduce the missing links (i.e. the topology). On the other hand, the fitness model can successfully replicate the topology of the ITN, but cannot predict the volumes. This paper tries to make an important step forward in the unification of those two frameworks, by proposing a new gross domestic product (GDP) driven model which can simultaneously reproduce the binary and the weighted properties of the ITN. Specifically, we adopt a maximum-entropy approach where both the degree and the strength of each node are preserved. We then identify strong nonlinear relationships between the GDP and the parameters of the model. This ultimately results in a weighted generalization of the fitness model of trade, where the GDP plays the role of a ‘macroeconomic fitness’ shaping the binary and the weighted structure of the ITN simultaneously. Our model mathematically explains an important asymmetry in the role of binary and weighted network properties, namely the fact that binary properties can be inferred without the knowledge of weighted ones, while the opposite is not true.

  1. Projections of health care expenditures as a share of the GDP: actuarial and macroeconomic approaches.

    PubMed Central

    Warshawsky, M J

    1994-01-01

    STUDY QUESTION. Can the steady increases in health care expenditures as a share of GDP projected by widely cited actuarial models be rationalized by a macroeconomic model with sensible parameters and specification? DATA SOURCES. National Income and Product Accounts, and Social Security and Health Care Financing Administration are the data sources used in parameters estimates. STUDY DESIGN. Health care expenditures as a share of gross domestic product (GDP) are projected using two methodological approaches--actuarial and macroeconomic--and under various assumptions. The general equilibrium macroeconomic approach has the advantage of allowing an investigation of the causes of growth in the health care sector and its consequences for the overall economy. DATA COLLECTION METHODS. Simulations are used. PRINCIPAL FINDINGS. Both models unanimously project a continued increase in the ratio of health care expenditures to GDP. Under the most conservative assumptions, that is, robust economic growth, improved demographic trends, or a significant moderation in the rate of health care price inflation, the health care sector will consume more than a quarter of national output by 2065. Under other (perhaps more realistic) assumptions, including a continuation of current trends, both approaches predict that health care expenditures will comprise between a third and a half of national output. In the macroeconomic model, the increasing use of capital goods in the health care sector explains the observed rise in relative prices. Moreover, this "capital deepening" implies that a relatively modest fraction of the labor force is employed in health care and that the rest of the economy is increasingly starved for capital, resulting in a declining standard of living. PMID:8063567

  2. Projections of health care expenditures as a share of the GDP: actuarial and macroeconomic approaches.

    PubMed

    Warshawsky, M J

    1994-08-01

    STUDY QUESTION. Can the steady increases in health care expenditures as a share of GDP projected by widely cited actuarial models be rationalized by a macroeconomic model with sensible parameters and specification? DATA SOURCES. National Income and Product Accounts, and Social Security and Health Care Financing Administration are the data sources used in parameters estimates. STUDY DESIGN. Health care expenditures as a share of gross domestic product (GDP) are projected using two methodological approaches--actuarial and macroeconomic--and under various assumptions. The general equilibrium macroeconomic approach has the advantage of allowing an investigation of the causes of growth in the health care sector and its consequences for the overall economy. DATA COLLECTION METHODS. Simulations are used. PRINCIPAL FINDINGS. Both models unanimously project a continued increase in the ratio of health care expenditures to GDP. Under the most conservative assumptions, that is, robust economic growth, improved demographic trends, or a significant moderation in the rate of health care price inflation, the health care sector will consume more than a quarter of national output by 2065. Under other (perhaps more realistic) assumptions, including a continuation of current trends, both approaches predict that health care expenditures will comprise between a third and a half of national output. In the macroeconomic model, the increasing use of capital goods in the health care sector explains the observed rise in relative prices. Moreover, this "capital deepening" implies that a relatively modest fraction of the labor force is employed in health care and that the rest of the economy is increasingly starved for capital, resulting in a declining standard of living. PMID:8063567

  3. Improving health and well-being independently of GDP: dividends of greener and prosocial economies.

    PubMed

    Pretty, Jules; Barton, Jo; Bharucha, Zareen Pervez; Bragg, Rachel; Pencheon, David; Wood, Carly; Depledge, Michael H

    2016-01-01

    Increases in gross domestic product (GDP) beyond a threshold of basic needs do not lead to further increases in well-being. An explanation is that material consumption (MC) also results in negative health externalities. We assess how these externalities influence six factors critical for well-being: (i) healthy food; (ii) active body; (iii) healthy mind; (iv) community links; (v) contact with nature; and (vi) attachment to possessions. If environmentally sustainable consumption (ESC) were increasingly substituted for MC, thus improving well-being and stocks of natural and social capital, and sustainable behaviours involving non-material consumption (SBs-NMC) became more prevalent, then well-being would increase regardless of levels of GDP. In the UK, the individualised annual health costs of negative consumption externalities (NCEs) currently amount to £62 billion for the National Health Service, and £184 billion for the economy (for mental ill-health, dementia, obesity, physical inactivity, diabetes, loneliness and cardiovascular disease). A dividend is available if substitution by ESC and SBs-NMC could limit the prevalence of these conditions. PMID:25670173

  4. Cryptococcus neoformans Dual GDP-Mannose Transporters and Their Role in Biology and Virulence

    PubMed Central

    Wang, Zhuo A.; Griffith, Cara L.; Skowyra, Michael L.; Salinas, Nichole; Williams, Matthew; Maier, Ezekiel J.; Gish, Stacey R.; Liu, Hong; Brent, Michael R.

    2014-01-01

    Cryptococcus neoformans is an opportunistic yeast responsible for lethal meningoencephalitis in humans. This pathogen elaborates a polysaccharide capsule, which is its major virulence factor. Mannose constitutes over one-half of the capsule mass and is also extensively utilized in cell wall synthesis and in glycosylation of proteins and lipids. The activated mannose donor for most biosynthetic reactions, GDP-mannose, is made in the cytosol, although it is primarily consumed in secretory organelles. This compartmentalization necessitates specific transmembrane transporters to make the donor available for glycan synthesis. We previously identified two cryptococcal GDP-mannose transporters, Gmt1 and Gmt2. Biochemical studies of each protein expressed in Saccharomyces cerevisiae showed that both are functional, with similar kinetics and substrate specificities in vitro. We have now examined these proteins in vivo and demonstrate that cells lacking Gmt1 show significant phenotypic differences from those lacking Gmt2 in terms of growth, colony morphology, protein glycosylation, and capsule phenotypes. Some of these observations may be explained by differential expression of the two genes, but others suggest that the two proteins play overlapping but nonidentical roles in cryptococcal biology. Furthermore, gmt1 gmt2 double mutant cells, which are unexpectedly viable, exhibit severe defects in capsule synthesis and protein glycosylation and are avirulent in mouse models of cryptococcosis. PMID:24747214

  5. Inhibition of GDP/GTP exchange on G alpha subunits by proteins containing G-protein regulatory motifs.

    PubMed

    Natochin, M; Gasimov, K G; Artemyev, N O

    2001-05-01

    A novel Galpha binding consensus sequence, termed G-protein regulatory (GPR) or GoLoco motif, has been identified in a growing number of proteins, which are thought to modulate G-protein signaling. Alternative roles of GPR proteins as nucleotide exchange factors or as GDP dissociation inhibitors for Galpha have been proposed. We investigated the modulation of the GDP/GTP exchange of Gialpha(1), Goalpha, and Gsalpha by three proteins containing GPR motifs (GPR proteins), LGN-585-642, Pcp2, and RapIGAPII-23-131, to elucidate the mechanisms of GPR protein function. The GPR proteins displayed similar patterns of interaction with Gialpha(1) with the following order of affinities: Gialpha(1)GDP > Gialpha(1)GDPAlF(4)(-) > or = Gialpha(1)GTPgammaS. No detectable binding of the GPR proteins to Gsalpha was observed. LGN-585-642, Pcp2, and RapIGAPII-23-131 inhibited the rates of spontaneous GTPgammaS binding and blocked GDP release from Gialpha(1) and Goalpha. The inhibitory effects of the GPR proteins on Gialpha(1) were significantly more potent, indicating that Gi might be a preferred target for these modulators. Our results suggest that GPR proteins are potent GDP dissociation inhibitors for Gialpha-like Galpha subunits in vitro, and in this capacity they may inhibit GPCR/Gi protein signaling in vivo. PMID:11318657

  6. Carbon dioxide emissions, GDP, energy use, and population growth: a multivariate and causality analysis for Ghana, 1971-2013.

    PubMed

    Asumadu-Sarkodie, Samuel; Owusu, Phebe Asantewaa

    2016-07-01

    In this study, the relationship between carbon dioxide emissions, GDP, energy use, and population growth in Ghana was investigated from 1971 to 2013 by comparing the vector error correction model (VECM) and the autoregressive distributed lag (ARDL). Prior to testing for Granger causality based on VECM, the study tested for unit roots, Johansen's multivariate co-integration and performed a variance decomposition analysis using Cholesky's technique. Evidence from the variance decomposition shows that 21 % of future shocks in carbon dioxide emissions are due to fluctuations in energy use, 8 % of future shocks are due to fluctuations in GDP, and 6 % of future shocks are due to fluctuations in population. There was evidence of bidirectional causality running from energy use to GDP and a unidirectional causality running from carbon dioxide emissions to energy use, carbon dioxide emissions to GDP, carbon dioxide emissions to population, and population to energy use. Evidence from the long-run elasticities shows that a 1 % increase in population in Ghana will increase carbon dioxide emissions by 1.72 %. There was evidence of short-run equilibrium relationship running from energy use to carbon dioxide emissions and GDP to carbon dioxide emissions. As a policy implication, the addition of renewable energy and clean energy technologies into Ghana's energy mix can help mitigate climate change and its impact in the future. PMID:27030236

  7. A New Neutral-pH Low-GDP Peritoneal Dialysis Fluid

    PubMed Central

    Himmele, Rainer; Jensen, Lynn; Fenn, Dominik; Ho, Chih-Hu; Sawin, Dixie-Ann; Diaz-Buxo, Jose A.

    2012-01-01

    ♦ Background: Conventional peritoneal dialysis fluids (PDFs) consist of ready-to-use solutions with an acidic pH. Sterilization of these fluids is known to generate high levels of glucose degradation products (GDPs). Although several neutral-pH, low-GDP PD solutions have been developed, none are commercially available in the United States. We analyzed pH and GDPs in Delflex Neutral pH (Fresenius Medical Care North America, Waltham, MA, USA), the first neutral-pH PDF to be approved by the US Food and Drug Administration. ♦ Methods: We evaluated whether patients (n = 26; age range: 18 - 78 years) could properly mix the Delflex Neutral pH PDF after standardized initial training. We further analyzed the concentrations of 10 different glucose degradation products in Delflex Neutral pH PDF and compared the results with similar analyses in other commercially available biocompatible PDFs. ♦ Results: All pH measurements (n = 288) in the delivered Delflex Neutral pH solution consistently fell within the labeled range of 7.0 ± 0.4. Analysis of mixing errors showed no significant impact on the pH results. Delflex Neutral pH, Balance (Fresenius Medical Care, Bad Homburg, Germany), BicaVera (Fresenius Medical Care), and Gambrosol Trio (Gambro Lundia AB, Lund, Sweden) exhibited similar low total GDP concentrations, with maximums in the 4.25% solutions of 88 μmol/L, 74 μmol/L, 74 μmol/L, and 79 μmol/L respectively; the concentration in Physioneal (Baxter Healthcare Corporation, Deerfield, IL, USA) was considerably higher at 263.26 μmol/L. The total GDP concentration in Extraneal (Baxter Healthcare Corporation) was 63 μmol/L, being thus slightly lower than the concentrations in the 4.25% glucose solutions, but higher than the concentrations in the 1.5% and 2.5% glucose solutions. ♦ Conclusions: The new Delflex Neutral pH PDF consistently delivers neutral pH with minimal GDPs. PMID:22383632

  8. Crystal structure of the GTPase domain and the bundle signalling element of dynamin in the GDP state.

    PubMed

    Anand, Roopsee; Eschenburg, Susanne; Reubold, Thomas F

    2016-01-01

    Dynamin is the prototype of a family of large multi-domain GTPases. The 100 kDa protein is a key player in clathrin-mediated endocytosis, where it cleaves off vesicles from membranes using the energy from GTP hydrolysis. We have solved the high resolution crystal structure of a fusion protein of the GTPase domain and the bundle signalling element (BSE) of dynamin 1 liganded with GDP. The structure provides a hitherto missing snapshot of the GDP state of the hydrolytic cycle of dynamin and reveals how the switch I region moves away from the active site after GTP hydrolysis and release of inorganic phosphate. Comparing our structure of the GDP state with the known structures of the GTP state, the transition state and the nucleotide-free state of dynamin 1 we describe the structural changes through the hydrolytic cycle. PMID:26612256

  9. Relating traffic fatalities to GDP in Europe on the long term.

    PubMed

    Antoniou, Constantinos; Yannis, George; Papadimitriou, Eleonora; Lassarre, Sylvain

    2016-07-01

    Modeling road safety development can provide important insight into policies for the reduction of traffic fatalities. In order to achieve this goal, both the quantifiable impact of specific parameters, as well as the underlying trends that cannot always be measured or observed, need to be considered. One of the key relationships in road safety links fatalities with risk and exposure, where exposure reflects the amount of travel, which in turn translates to how much travelers are exposed to risk. In general two economic variables: GDP and unemployment rate are selected to analyse the statistical relationships with some indicators of road accident fatality risk. The objective of this research is to provide an overview of relevant literature on the topic and outline some recent developments in macro-panel data analysis that have resulted in ongoing research that has the potential to improve our ability to forecast traffic fatality trends, especially under turbulent financial situations. For this analysis, time series of the number of fatalities and GDP in 30 European countries for a period of 38 years (1975-2012) are used. This process relies on estimating long-term models (as captured by long term time-series models, which model each country separately). Based on these developments, utilizing state-of-the-art modelling and analysis techniques such as the Common Correlated Effects Mean Group estimator (Pesaran), the long-term elasticity mean value equals 0.63, and is significantly different from zero for 10 countries only. When we take away the countries, where the number of fatalities is stationary, the average elasticity takes a higher value of nearly 1. This shows the strong sensitivity of the estimate of the average elasticity over a panel of European countries and underlines the necessity to be aware of the underlying nature of the time series, to get a suitable regression model. PMID:27042989

  10. Interaction of Anesthetics with the Rho GTPase Regulator Rho GDP Dissociation Inhibitor†

    PubMed Central

    Ho, Cojen; Shanmugasundararaj, Sivananthaperumal; Miller, Keith W.; Malinowski, Steve A.; Cook, Anthony C.; Slater, Simon J.

    2015-01-01

    The physiological effects of anesthetics have been ascribed to their interaction with hydrophobic sites within functionally relevant CNS proteins. Studies have shown that volatile anesthetics compete for luciferin binding to the hydrophobic substrate binding site within firefly luciferase and inhibit its activity (Franks, N. P., and Lieb, W. R. (1984) Nature 310, 599–601). To assess whether anesthetics also compete for ligand binding to a mammalian signal transduction protein, we investigated the interaction of the volatile anesthetic, halothane, with the Rho GDP dissociation inhibitor (RhoGDIα), which binds the geranylgeranyl moiety of GDP-bound Rho GTPases. Consistent with the existence of a discrete halothane binding site, the intrinsic tryptophan fluorescence of RhoGDIα was quenched by halothane (2-bromo-2-chloro-1,1,1-trifluoroethane) in a saturable, concentration-dependent manner. Bromine quenching of tryptophan fluorescence is short range and W192 and W194 of the RhoGDIα are located within the geranylgeranyl binding pocket, suggesting that halothane binds within this region. Supporting this, N-acetyl-geranylgeranyl cysteine reversed tryptophan quenching by halothane. Short chain n-alcohols (n<6) also reversed tryptophan quenching, suggesting that RhoGDIα may also bind n-alkanols. Consistent with this, E193 was photo-labeled by 3-azibutanol. This residue is located in the vicinity of, but outside, the geranylgeranyl chain binding pocket, suggesting that the alcohol binding site is distinct from that occupied by halothane. Supporting this, N-acetyl-geranylgeranyl cysteine enhanced E193 photo-labeling by 3-azibutanol. Overall, the results suggest that halothane binds to a site within the geranylgeranyl chain binding pocket of RhoGDIα, whereas alcohols bind to a distal site that interacts allosterically with this pocket. PMID:18702520

  11. China's Pathways to Achieving 40% ~ 45% Reduction in CO{sub 2} Emissions per Unit of GDP in 2020: Sectoral Outlook and Assessment of Savings Potential

    SciTech Connect

    Zheng, Nina; Fridley, David; Zhou, Nan; Levine, Mark; Price, Lynn; Ke, Jing

    2011-09-30

    Achieving China’s goal of reducing its carbon intensity (CO{sub 2} per unit of GDP) by 40% to 45% percent below 2005 levels by 2020 will require the strengthening and expansion of energy efficiency policies across the buildings, industries and transport sectors. This study uses a bottom-up, end-use model and two scenarios -- an enhanced energy efficiency (E3) scenario and an alternative maximum technically feasible energy efficiency improvement (Max Tech) scenario – to evaluate what policies and technical improvements are needed to achieve the 2020 carbon intensity reduction target. The findings from this study show that a determined approach by China can lead to the achievement of its 2020 goal. In particular, with full success in deepening its energy efficiency policies and programs but following the same general approach used during the 11th Five Year Plan, it is possible to achieve 49% reduction in CO{sub 2} emissions per unit of GDP (CO{sub 2} emissions intensity) in 2020 from 2005 levels (E3 case). Under the more optimistic but feasible assumptions of development and penetration of advanced energy efficiency technology (Max Tech case), China could achieve a 56% reduction in CO{sub 2} emissions intensity in 2020 relative to 2005 with cumulative reduction of energy use by 2700 Mtce and of CO{sub 2} emissions of 8107 Mt CO{sub 2} between 2010 and 2020. Energy savings and CO{sub 2} mitigation potential varies by sector but most of the energy savings potential is found in energy-intensive industry. At the same time, electricity savings and the associated emissions reduction are magnified by increasing renewable generation and improving coal generation efficiency, underscoring the dual importance of end-use efficiency improvements and power sector decarbonization.

  12. Structure of Gαi1 bound to a GDP-selective peptide provides insight into guanine nucleotide exchange

    PubMed Central

    Johnston, Christopher A.; Willard, Francis S.; Jezyk, Mark R.; Fredericks, Zoey; Bodor, Erik T.; Jones, Miller B.; Blaesius, Rainer; Watts, Val J.; Harden, T. Kendall; Sondek, John; Ramer, J. Kevin; Siderovski, David P.

    2005-01-01

    Heterotrimeric G-proteins are molecular switches that regulate numerous signaling pathways involved in cellular physiology. This characteristic is achieved by the adoption of two principal states: an inactive, GDP-bound and an active, GTP-bound state. Under basal conditions G-proteins exist in the inactive GDP-bound state, thus nucleotide exchange is crucial to the onset of signaling. Despite our understanding of G-protein signaling pathways, the mechanism of nucleotide exchange remains elusive. We employed phage display technology to identify nucleotide-state-dependent Gα binding peptides. Herein, we report a GDP-selective Gα-binding peptide, KB-752, that enhances spontaneous nucleotide exchange of Gαi subunits. Structural determination of the Gαi1/peptide complex reveals unique changes in the Gα switch regions predicted to enhance nucleotide exchange by creating a GDP dissociation route. Our results cast light onto a potential mechanism by which Gα subunits adopt a conformation suitable for nucleotide exchange. PMID:16004878

  13. Book Review: "The Road to Sustainability, GDP and Future Generations" Pulselli et al, WIT Press, Southhampton, UK 197p 2008

    EPA Science Inventory

    “The Road to Sustainability, GDP and future generations” by Pulselli, F.M., Bastianoni, S., Marchettini, N. Tiezzi, E. was reviewed upon request by the journal’s editor. Briefly, this book presents the authors’ perspective on the complex and important topic of sustainability. Su...

  14. Concentration of rat brown adipose tissue uncoupling protein may not be correlated with /sup 3/H-GDP binding

    SciTech Connect

    Henningfield, M.F.; Swick, A.G.; Swick, R.W.

    1986-03-01

    Rats fed diets low in protein or exposed to cold show an increase in brown adipose tissue (BAT) mitochondrial /sup 3/H-GDP binding. To investigate this phenomenon further, the uncoupling protein associated with BAT function was measured immunochemically on nitrocellulose blots. Quantitation of uncoupling protein was achieved by densitometer scanning with a BioRad densitometer. Peaks were integrated with Chromatochart software and an Apple IIe computer. A standard curve of purified uncoupling protein (50 to 500 ng) was used to calculate uncoupling protein concentration. There is a 1.5-fold increase in uncoupling protein per mg of protein in BAT mitochondria from rats exposed to cold for 15 days. There was no decrease in uncoupling protein from rats exposed to the cold followed by 24 h at 27/sup 0/C although /sup 3/H-GDP binding had decreased by half. Rats fed diets containing either 5 or 15% lactalbumin for 3 weeks did not show differences in uncoupling protein concentration although /sup 3/H-GDP binding was 1.5-fold greater in BAT mitochondria from the low protein group. These results indicate that GDP binding does not necessarily reflect the concentration of uncoupling protein in BAT mitochondria.

  15. A Novel GDP-d-glucose Phosphorylase Involved in Quality Control of the Nucleoside Diphosphate Sugar Pool in Caenorhabditis elegans and Mammals*

    PubMed Central

    Adler, Lital N.; Gomez, Tara A.; Clarke, Steven G.; Linster, Carole L.

    2011-01-01

    The plant VTC2 gene encodes GDP-l-galactose phosphorylase, a rate-limiting enzyme in plant vitamin C biosynthesis. Genes encoding apparent orthologs of VTC2 exist in both mammals, which produce vitamin C by a distinct metabolic pathway, and in the nematode worm Caenorhabditis elegans where vitamin C biosynthesis has not been demonstrated. We have now expressed cDNAs of the human and worm VTC2 homolog genes (C15orf58 and C10F3.4, respectively) and found that the purified proteins also display GDP-hexose phosphorylase activity. However, as opposed to the plant enzyme, the major reaction catalyzed by these enzymes is the phosphorolysis of GDP-d-glucose to GDP and d-glucose 1-phosphate. We detected activities with similar substrate specificity in worm and mouse tissue extracts. The highest expression of GDP-d-glucose phosphorylase was found in the nervous and male reproductive systems. A C. elegans C10F3.4 deletion strain was found to totally lack GDP-d-glucose phosphorylase activity; this activity was also found to be decreased in human HEK293T cells transfected with siRNAs against the human C15orf58 gene. These observations confirm the identification of the worm C10F3.4 and the human C15orf58 gene expression products as the GDP-d-glucose phosphorylases of these organisms. Significantly, we found an accumulation of GDP-d-glucose in the C10F3.4 mutant worms, suggesting that the GDP-d-glucose phosphorylase may function to remove GDP-d-glucose formed by GDP-d-mannose pyrophosphorylase, an enzyme that has previously been shown to lack specificity for its physiological d-mannose 1-phosphate substrate. We propose that such removal may prevent the misincorporation of glucosyl residues for mannosyl residues into the glycoconjugates of worms and mammals. PMID:21507950

  16. A σD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP in Bacillus subtilis.

    PubMed

    Luo, Yun; Helmann, John D

    2012-11-01

    Cyclic-di-AMP (c-di-AMP) is an essential second messenger in Bacillus subtilis, and depletion leads to defects in the integrity of the cell wall. Levels of c-di-AMP are regulated by both the rates of synthesis (by diadenylate cyclases) and the rates of degradation (by the GdpP phosphodiesterase, formerly YybT). Little is known about the regulation of gdpP expression or GdpP activity, but mutations that inactivate GdpP lead to high-level resistance to β-lactam antibiotics. Here we demonstrate that expression of gdpP is regulated by a cis-acting antisense RNA (gdpP(as)) in vivo. Transcription of this antisense RNA is initiated in the middle of the gdp gene and is dependent on an alternative sigma factor, σ(D), previously associated with the expression of late flagellar genes, chemotaxis proteins and cell wall autolytic enzymes. Changes in σ(D) activity can modulate GdpP protein levels by ~2.5-fold, which may provide a mechanism for the cell to upregulate c-di-AMP levels in coordination with the activation of autolytic enzymes. PMID:22956758

  17. A σD-dependent antisense transcript modulates expression of the cyclic-di-AMP hydrolase GdpP in Bacillus subtilis

    PubMed Central

    Luo, Yun

    2012-01-01

    Cyclic-di-AMP (c-di-AMP) is an essential second messenger in Bacillus subtilis, and depletion leads to defects in the integrity of the cell wall. Levels of c-di-AMP are regulated by both the rates of synthesis (by diadenylate cyclases) and the rates of degradation (by the GdpP phosphodiesterase, formerly YybT). Little is known about the regulation of gdpP expression or GdpP activity, but mutations that inactivate GdpP lead to high-level resistance to β-lactam antibiotics. Here we demonstrate that expression of gdpP is regulated by a cis-acting antisense RNA (gdpPas) in vivo. Transcription of this antisense RNA is initiated in the middle of the gdp gene and is dependent on an alternative sigma factor, σD, previously associated with the expression of late flagellar genes, chemotaxis proteins and cell wall autolytic enzymes. Changes in σD activity can modulate GdpP protein levels by ~2.5-fold, which may provide a mechanism for the cell to upregulate c-di-AMP levels in coordination with the activation of autolytic enzymes. PMID:22956758

  18. Nuclear microbeam analysis of ICF target material made by GDP technique

    NASA Astrophysics Data System (ADS)

    Rong, C.; He, X.; Meng, J.; Gao, D.; Zhang, Y.; Li, X.; Lyu, H.; Zhu, Y.; Zheng, Y.; Wang, X.; Shen, H.

    2015-04-01

    Germanium doped carbon-hydrogen polymer (CH) by Glow Discharge Polymer (GDP) technique has become the preferred Inertial Confinement Fusion (ICF) target material. The nondestructive measurement of elements content in the ICF target has become a significant work in recent years. This paper presents the compositional and distributional results of the Germanium doped CH analysis. The Ge doped CH materials as thin film and as hollow sphere were investigated by the Rutherford Backscattering Spectroscopy (RBS) combined with the particle induced X-ray emission (PIXE) and the Elastic Recoil Detection Analysis (ERDA). The samples are thin film with 36 μm thickness and ICF target with 500-2000 μm diameter. The calibration and geometrical arrangement in the analysis of spherical target should be carefully considered in order to acquire accurate results. In the work, the uniformity of the sphere is shown and the ratio of carbon, hydrogen and germanium has been measured. The ratio values are in good agreement with the results obtained by the combustion method. In addition, the difference of the composition from thin film to hollow sphere is also discussed. This work demonstrates that nuclear microbeam analysis is an ideal method to evaluate the ICF target quality.

  19. Characterization of the gene coding for GDP-mannose dehydrogenase (algD) from Azotobacter vinelandii.

    PubMed Central

    Campos, M; Martínez-Salazar, J M; Lloret, L; Moreno, S; Núñez, C; Espín, G; Soberón-Chávez, G

    1996-01-01

    Azotobacter vinelandii presents a differentiation process leading to the formation of desiccation-resistant cysts. Alginate, the exopolysaccharide produced by this bacterium, has been postulated to have a role in cyst formation. Here, we report the cloning and characterization of the A. vinelandii gene coding for the enzyme GDP-mannose dehydrogenase (algD), which is the key enzyme for alginate synthesis in Pseudomonas aeruginosa. This gene has a high degree of similarity with the algD gene from P. aeruginosa, and similar proteins seem to be involved in algD regulation in both bacteria. We show the existence of two mRNA start sites; one of these sites corresponds to a promoter transcribed by RNA polymerase containing a sigma E subunit. An A. vinelandii algD mutant which is completely impaired in alginate production and which is unable to form desiccation-resistant cells was constructed. The effects of NH4, NO3, and NaCl concentrations on algD transcription for three A. vinelandii strains producing different alginate levels were evaluated. We found a strict correlation between alginate production and algD transcription for the three strains studied; however, the effects on algD transcription under the conditions studied were different for each strain. The nitrogen source regulates algD expression in the wild-type strain. PMID:8606150

  20. Arabidopsis VTC2 Encodes a GDP-l-Galactose Phosphorylase, the Last Unknown Enzyme in the Smirnoff-Wheeler Pathway to Ascorbic Acid in Plants*

    PubMed Central

    Linster, Carole L.; Gomez, Tara A.; Christensen, Kathryn C.; Adler, Lital N.; Young, Brian D.; Brenner, Charles; Clarke, Steven G.

    2008-01-01

    The first committed step in the biosynthesis of l-ascorbate from d-glucose in plants requires conversion of GDP-l-galactose to l-galactose 1-phosphate by a previously unidentified enzyme. Here we show that the protein encoded by VTC2, a gene mutated in vitamin C-deficient Arabidopsis thaliana strains, is a member of the GalT/Apa1 branch of the histidine triad protein superfamily that catalyzes the conversion of GDP-l-galactose to l-galactose 1-phosphate in a reaction that consumes inorganic phosphate and produces GDP. In characterizing recombinant VTC2 from Arabidopsis thaliana as a specific GDP-l-galactose/GDP-d-glucose phosphorylase, we conclude that enzymes catalyzing each of the ten steps of the Smirnoff-Wheeler pathway from glucose to ascorbate have been identified. Finally, we identify VTC2 homologs in plants, invertebrates, and vertebrates, suggesting that a similar reaction is used widely in nature. PMID:17462988

  1. Helix dipole movement and conformational variability contribute to allosteric GDP release in Galphai subunits.

    PubMed

    Preininger, Anita M; Funk, Michael A; Oldham, William M; Meier, Scott M; Johnston, Christopher A; Adhikary, Suraj; Kimple, Adam J; Siderovski, David P; Hamm, Heidi E; Iverson, Tina M

    2009-03-31

    Heterotrimeric G proteins (Galphabetagamma) transmit signals from activated G protein-coupled receptors (GPCRs) to downstream effectors through a guanine nucleotide signaling cycle. Numerous studies indicate that the carboxy-terminal alpha5 helix of Galpha subunits participates in Galpha-receptor binding, and previous EPR studies suggest this receptor-mediated interaction induces a rotation and translation of the alpha5 helix of the Galpha subunit [Oldham, W. M., et al. (2006) Nat. Struct. Mol. Biol. 13, 772-777]. On the basis of this result, an engineered disulfide bond was designed to constrain the alpha5 helix of Galpha(i1) into its EPR-measured receptor-associated conformation through the introduction of cysteines at position 56 in the alpha1 helix and position 333 in the alpha5 helix (I56C/Q333C Galpha(i1)). A functional mimetic of the EPR-measured alpha5 helix dipole movement upon receptor association was additionally created by introduction of a positive charge at the amino terminus of this helix, D328R Galpha(i1). Both proteins exhibit a dramatically elevated level of basal nucleotide exchange. The 2.9 A resolution crystal structure of I56C/Q333C Galpha(i1) in complex with GDP-AlF(4)(-) reveals the shift of the alpha5 helix toward the guanine nucleotide binding site that is anticipated by EPR measurements. The structure of the I56C/Q333C Galpha(i1) subunit further revealed altered positions for the switch regions and throughout the Galpha(i1) subunit, accompanied by significantly elevated crystallographic temperature factors. Combined with previous evidence in the literature, the structural analysis supports the critical role of electrostatics of the alpha5 helix dipole and overall conformational variability during nucleotide release. PMID:19222191

  2. Helix Dipole Movement and Conformational Variability Contribute to Allosteric GDP Release in G[alpha] Subunits

    SciTech Connect

    Preininger, Anita M.; Funk, Michael A.; Oldham, William M.; Meier, Scott M.; Johnston, Christopher A.; Adhikary, Suraj; Kimple, Adam J.; Siderovski, David P.; Hamm, Heidi E.; Iverson, Tina M.

    2009-06-01

    Heterotrimeric G proteins (Galphabetagamma) transmit signals from activated G protein-coupled receptors (GPCRs) to downstream effectors through a guanine nucleotide signaling cycle. Numerous studies indicate that the carboxy-terminal alpha5 helix of Galpha subunits participates in Galpha-receptor binding, and previous EPR studies suggest this receptor-mediated interaction induces a rotation and translation of the alpha5 helix of the Galpha subunit [Oldham, W. M., et al. (2006) Nat. Struct. Mol. Biol. 13, 772-777]. On the basis of this result, an engineered disulfide bond was designed to constrain the alpha5 helix of Galpha(i1) into its EPR-measured receptor-associated conformation through the introduction of cysteines at position 56 in the alpha1 helix and position 333 in the alpha5 helix (I56C/Q333C Galpha(i1)). A functional mimetic of the EPR-measured alpha5 helix dipole movement upon receptor association was additionally created by introduction of a positive charge at the amino terminus of this helix, D328R Galpha(i1). Both proteins exhibit a dramatically elevated level of basal nucleotide exchange. The 2.9 A resolution crystal structure of I56C/Q333C Galpha(i1) in complex with GDP-AlF(4)(-) reveals the shift of the alpha5 helix toward the guanine nucleotide binding site that is anticipated by EPR measurements. The structure of the I56C/Q333C Galpha(i1) subunit further revealed altered positions for the switch regions and throughout the Galpha(i1) subunit, accompanied by significantly elevated crystallographic temperature factors. Combined with previous evidence in the literature, the structural analysis supports the critical role of electrostatics of the alpha5 helix dipole and overall conformational variability during nucleotide release.

  3. Doublecortin Is Excluded from Growing Microtubule Ends and Recognizes the GDP-Microtubule Lattice.

    PubMed

    Ettinger, Andreas; van Haren, Jeffrey; Ribeiro, Susana A; Wittmann, Torsten

    2016-06-20

    Many microtubule (MT) functions are mediated by a diverse class of proteins (+TIPs) at growing MT plus ends that control intracellular MT interactions and dynamics and depend on end-binding proteins (EBs) [1]. Cryoelectron microscopy has recently identified the EB binding site as the interface of four tubulin dimers that undergoes a conformational change in response to β-tubulin GTP hydrolysis [2, 3]. Doublecortin (DCX), a MT-associated protein (MAP) required for neuronal migration during cortical development [4, 5], binds to the same site as EBs [6], and recent in vitro studies proposed DCX localization to growing MT ends independent of EBs [7]. Because this conflicts with observations in neurons [8, 9] and the molecular function of DCX is not well understood, we revisited intracellular DCX dynamics at low expression levels. Here, we report that DCX is not a +TIP in cells but, on the contrary, is excluded from the EB1 domain. In addition, we find that DCX-MT interactions are highly sensitive to MT geometry. In cells, DCX binding was greatly reduced at MT segments with high local curvature. Remarkably, this geometry-dependent binding to MTs was completely reversed in the presence of taxanes, which reconciles incompatible observations in cells [9] and in vitro [10]. We propose a model explaining DCX specificity for different MT geometries based on structural changes induced by GTP hydrolysis that decreases the spacing between adjacent tubulin dimers [11]. Our data are consistent with a unique mode of MT interaction in which DCX specifically recognizes this compacted GDP-like MT lattice. PMID:27238282

  4. A Rho GDP Dissociation Inhibitor Produced by Apoptotic T-Cells Inhibits Growth of Mycobacterium tuberculosis

    PubMed Central

    Venkatasubramanian, Sambasivan; Dhiman, Rohan; Paidipally, Padmaja; Cheekatla, Satyanarayana S.; Tripathi, Deepak; Welch, Elwyn; Tvinnereim, Amy R.; Jones, Brenda; Theodorescu, Dan; Barnes, Peter F.; Vankayalapati, Ramakrishna

    2015-01-01

    In this study, we found that a subpopulation of CD4+CD25+ (85% Foxp3+) cells from persons with latent tuberculosis infection (LTBI) inhibits growth of M. tuberculosis (M. tb) in human monocyte-derived macrophages (MDMs). A soluble factor, Rho GDP dissociation inhibitor (D4GDI), produced by apoptotic CD4+CD25+ (85% Foxp3+) cells is responsible for this inhibition of M. tb growth in human macrophages and in mice. M. tb-expanded CD4+CD25+Foxp3+D4GDI+ cells do not produce IL-10, TGF-β and IFN-γ. D4GDI inhibited growth of M. tb in MDMs by enhancing production of IL-1β, TNF-α and ROS, and by increasing apoptosis of M. tb-infected MDMs. D4GDI was concentrated at the site of disease in tuberculosis patients, with higher levels detected in pleural fluid than in serum. However, in response to M. tb, PBMC from tuberculosis patients produced less D4GDI than PBMC from persons with LTBI. M. tb-expanded CD4+CD25+ (85% Foxp3+) cells and D4GDI induced intracellular M. tb to express the dormancy survival regulator DosR and DosR-dependent genes, suggesting that D4GDI induces a non-replicating state in the pathogen. Our study provides the first evidence that a subpopulation of CD4+CD25+ (85% Foxp3+) cells enhances immunity to M. tb, and that production of D4GDI by this subpopulation inhibits M. tb growth. PMID:25659138

  5. GDP-D-mannose pyrophosphorylase from Pogonatherum paniceum enhances salinity and drought tolerance of transgenic tobacco.

    PubMed

    Ai, Taobo; Liao, Xuehong; Li, Rui; Fan, Linhong; Luo, Fengxue; Xu, Ying; Wang, Shenghua

    2016-01-01

    Pogonatherum paniceum is a highly drought- and salt-tolerant plant species that is typically used for ecological restoration and the conservation of soil and water in many countries. Understanding the molecular mechanisms underlying plant abiotic stress responses, especially to salinity and drought stresses, in species such as P. paniceum could be important to broader crop improvement efforts. GDP-D-mannose pyrophosphorylase (GMPase) is the limiting enzyme in the synthesis of L-ascorbic acid (AsA), which plays a crucial role in the detoxification of reactive oxygen species (ROS). We have cloned and characterized the cDNA of the PpGMP gene of P. paniceum encoding a GMPase. The full-length cDNA sequence contains 1411 nucleotides encoding a putative protein with 361 amino acid residues and an approximate molecular mass of 39.68 kDa. The GMPase transcript was up-regulated in P. paniceum plants subjected to salinity and drought stress, respectively. Transgenic tobacco expressing PpGMPase exhibited enhanced salinity and drought resistance, a higher seed germination rate, better growth performance, a higher AsA content, a more stable redox state, higher superoxide dismutase (SOD) activity, and lower levels of malonaldehyde (MDA) and H2O2 under drought and salinity stress. Taken together, expression of PpGMPase in tobacco conferred salinity and drought stress tolerance by increasing the content of AsA, thereby enhancing ROS-detoxifying functions. Thus, PpGMP is a potential candidate gene for crop improvement. PMID:27442366

  6. Molecular cloning and characterisation of a Rab-binding GDP-dissociation inhibitor from Medicago truncatula.

    PubMed

    Yaneva, Ivanka Asparuhova; Niehaus, Karsten

    2005-03-01

    We have isolated and sequenced the full-length cDNA of a GDP-dissociation inhibitor (GDI) from the model legume Medicago truncatula L. The cDNA (MtGDI) contains an open reading frame of 1335 bp, coding for a protein of 444 amino acids with a calculated molecular mass of 49,785 kDa. The deduced amino acid sequence shows significant homology to other plant GDIs, the highest homology being found to GDI from the legume Cicer arietinum (96% identity). The MtGDI was expressed as a N-terminal FLAG-fusion protein in Escherichia coli BL21 (DE3). Its direct interaction with a small G protein of Rab type from Medicago sativa, MsRab11f, was demonstrated in vitro by co-immunoprecipitation using a peptide-specific antibody raised against MtGDI. The dissociation constant of the MtGDI-MsRab11f complex (4 muM) was determined by a surface plasmon resonance (SPR) assay. Real-time RT-PCR and Western blot analyses suggested that MtGDI is ubiquitously expressed in M. truncatula. High levels of MtGDI mRNA were detected in uninfected roots, leaves and root nodules. In etiolated seedlings and cell cultures, the amount of MtGDI mRNA was much lower. In all tissues tested, the peptide-specific anti-MtGDI antibody detected the expected 50 kDa protein in the total protein extracts. MtGDI was found in the cytosol; however, a significant fraction was associated with the intracellular membranes in seedlings and roots indicating a membrane localisation of the protein. A second immunoreactive band was detected in leaves suggesting that more than one GDI isoform exist in M. truncatula. PMID:15854828

  7. Digital varying-frequency generator

    NASA Technical Reports Server (NTRS)

    Allen, M. J.

    1977-01-01

    Generator employs up/down counters, digital-to-analog converters, and integrator to determine frequency and time duration of output. Circuit can be used where varying signal must be controlled accurately over long period of time.

  8. Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

    SciTech Connect

    Simonetti, Angelita; Fabbretti, Attilio; Hazemann, Isabelle; Jenner, Lasse; Gualerzi, Claudio O.; Klaholz, Bruno P.

    2013-06-01

    The crystal structures of the eubacterial translation initiation factor 2 in apo form and with bound GDP and GTP reveal conformational changes upon nucleotide binding and hydrolysis, notably of the catalytically important histidine in the switch II region. Translation initiation factor 2 (IF2) is involved in the early steps of bacterial protein synthesis. It promotes the stabilization of the initiator tRNA on the 30S initiation complex (IC) and triggers GTP hydrolysis upon ribosomal subunit joining. While the structure of an archaeal homologue (a/eIF5B) is known, there are significant sequence and functional differences in eubacterial IF2, while the trimeric eukaryotic IF2 is completely unrelated. Here, the crystal structure of the apo IF2 protein core from Thermus thermophilus has been determined by MAD phasing and the structures of GTP and GDP complexes were also obtained. The IF2–GTP complex was trapped by soaking with GTP in the cryoprotectant. The structures revealed conformational changes of the protein upon nucleotide binding, in particular in the P-loop region, which extend to the functionally relevant switch II region. The latter carries a catalytically important and conserved histidine residue which is observed in different conformations in the GTP and GDP complexes. Overall, this work provides the first crystal structure of a eubacterial IF2 and suggests that activation of GTP hydrolysis may occur by a conformational repositioning of the histidine residue.

  9. Shock compression of glow discharge polymer (GDP): density functional theory (DFT) simulations and experiments on Sandia's Z-machine

    NASA Astrophysics Data System (ADS)

    Cochrane, K. R.; Ao, T.; Hamel, S.; Lemke, R. W.; Schoff, M. E.; Blue, B. E.; Herrmann, M. C.; Mattsson, T. R.

    2015-06-01

    Glow discharge polymer (GDP) is used extensively in inertial confinement fusion (ICF) capsules. Accurate knowledge of the equation of state (EOS) under shock and release is particularly important for high-fidelity design and analysis of ICF experiments since the capsule material is subject to several converging shocks as well as release towards the cryogenic fuel. We performed Density Functional Theory (DFT) based molecular dynamics simulations, to gain knowledge of the behavior of GDP - for example regarding the role of chemical dissociation during shock compression, we find that the dissociation regime along the Hugoniot extends from 50 GPa to 250 GPa. The shock pressures calculated from DFT are compared to experimental data taken on magnetically launched flyer plate impact experiments at Sandia's Z-machine. Large GDP samples were grown in a planar geometry to improve the sample quality and maintained in a nitrogen atmosphere following manufacturing, thus allowing for a direct comparison to the simulations. Sandia National Laboratories is a multi program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's NNSA under Contract DE-AC04-94AL85000

  10. Shock compression of glow discharge polymer (GDP): density functional theory (DFT) simulations and experiments on Sandia's Z-machine

    NASA Astrophysics Data System (ADS)

    Mattsson, Thomas R.; Cochrane, K. R.; Ao, T.; Lemke, R. W.; Flicker, D. G.; Schoff, M. E.; Blue, B. E.; Hamel, S.; Herrmann, M. C.

    2015-11-01

    Glow discharge polymer (GDP) is used extensively as capsule/ablation material in inertial confinement fusion (ICF) capsules. Accurate knowledge of the equation of state (EOS) under shock and release is particularly important for high-fidelity design, analysis, and optimization of ICF experiments since the capsule material is subject to several converging shocks as well as release towards the cryogenic fuel. We performed Density Functional Theory (DFT) based quantum molecular dynamics (QMD) simulations, to gain knowledge of the behavior of GDP - including the effect of changes in chemical composition. The shock pressures calculated from DFT are compared experimental data taken on magnetically launched flyer plate impact experiments on at Sandia's Z-machine. Large GDP samples were grown in a planar geometry to improve the sample quality and maintained in a nitrogen atmosphere following manufacturing, thus allowing for a direct comparison to the DFT/QMD simulations. Sandia National Laboratories is a multi program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's NNSA under contract DE-AC04-94AL85000.

  11. Insights into leukocyte adhesion deficiency type 2 from a novel mutation in the GDP-fucose transporter gene.

    PubMed

    Hidalgo, Andrés; Ma, Songhui; Peired, Anna J; Weiss, Linnea A; Cunningham-Rundles, Charlotte; Frenette, Paul S

    2003-03-01

    Leukocyte adhesion deficiency type 2 (LADII) is characterized by defective selectin ligand formation, recurrent infection, and mental retardation. This rare syndrome has only been described in 2 kindreds of Middle Eastern descent who have differentially responded to exogenous fucose treatment. The molecular defect was recently ascribed to single and distinct missense mutations in a putative Golgi guanosine diphosphate (GDP)-fucose transporter. Here, we describe a patient of Brazilian origin with features of LADII. Sequencing of the GDP-fucose transporter revealed a novel single nucleotide deletion producing a shift in the open-reading frame and severe truncation of the polypeptide. Overexpression of the mutant protein in the patient's fibroblasts did not rescue fucosylation, suggesting that the deletion ablated the activity of the transporter. Administration of oral L-fucose to the patient produced molecular and clinical responses, as measured by the appearance of selectin ligands, normalization of neutrophil counts, and prevention of infectious recurrence. The lower neutrophil counts paralleled improved neutrophil interactions with activated endothelium in cremasteric venules of nonobese diabetic/severe combined immunodeficiency (NOD/SCID) mice. However, fucose supplementation induced autoimmune neutropenia and the appearance of H antigen on erythrocytes, albeit without evidence of intravascular hemolysis. The robust response to fucose despite a severely truncated transporter suggests alternative means to transport GDP-fucose into the Golgi complex. PMID:12406889

  12. Crystal structure of a dynamin GTPase domain in both nucleotide-free and GDP-bound forms

    PubMed Central

    Niemann, Hartmut H.; Knetsch, Menno L.W.; Scherer, Anna; Manstein, Dietmar J.; Kull, F.Jon

    2001-01-01

    Dynamins form a family of multidomain GTPases involved in endocytosis, vesicle trafficking and maintenance of mitochondrial morphology. In contrast to the classical switch GTPases, a force-generating function has been suggested for dynamins. Here we report the 2.3 Å crystal structure of the nucleotide-free and GDP-bound GTPase domain of Dictyostelium discoideum dynamin A. The GTPase domain is the most highly conserved region among dynamins. The globular structure contains the G-protein core fold, which is extended from a six-stranded β-sheet to an eight-stranded one by a 55 amino acid insertion. This topologically unique insertion distinguishes dynamins from other subfamilies of GTP-binding proteins. An additional N-terminal helix interacts with the C-terminal helix of the GTPase domain, forming a hydrophobic groove, which could be occupied by C-terminal parts of dynamin not present in our construct. The lack of major conformational changes between the nucleotide-free and the GDP-bound state suggests that mechanochemical rearrangements in dynamin occur during GTP binding, GTP hydrolysis or phosphate release and are not linked to loss of GDP. PMID:11689422

  13. The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-d-rhamnose biosynthesis pathway

    PubMed Central

    Anderson, Erin M.; McNally, David J.; Brisson, Jean-Robert; Messner, Paul; Garavito, R. M.; Lam, Joseph S.

    2015-01-01

    The rare 6-deoxysugar d-rhamnose is a component of bacterial cell surface glycans, including the d-rhamnose homopolymer produced by Pseudomonas aeruginosa, called A-band O polysaccharide. GDP-d-rhamnose synthesis from GDP-d-mannose is catalyzed by two enzymes. The first is a GDP-d-mannose-4,6-dehydratase (GMD). The second enzyme, RMD, reduces the GMD product (GDP-6-deoxy-d-lyxo-hexos-4-ulose) to GDP-d-rhamnose. Genes encoding GMD and RMD are present in P. aeruginosa, and genetic evidence indicates they act in A-band O-polysaccharide biosynthesis. Details of their enzyme functions have not, however, been previously elucidated. We aimed to characterize these enzymes biochemically, and to determine the structure of RMD to better understand what determines substrate specificity and catalytic activity in these enzymes. We used capillary electrophoresis and NMR analysis of reaction products to precisely define P. aeruginosa GMD and RMD functions. P. aeruginosa GMD is bifunctional, and can catalyze both GDP-d-mannose 4,6-dehydration and the subsequent reduction reaction to produce GDP-d-rhamnose. RMD catalyzes the stereospecific reduction of GDP-6-deoxy-d-lyxo-hexos-4-ulose, as predicted. Reconstitution of GDP-d-rhamnose biosynthesis in vitro revealed that the P. aeruginosa pathway may be regulated by feedback inhibition in the cell. We determined the structure of RMD from Aneurinibacillus thermoaerophilus at 1.8 Å resolution. The structure of A. thermoaerophilus RMD is remarkably similar to that of P. aeruginosa GMD, which explains why P. aeruginosa GMD is also able to catalyze the RMD reaction. Comparison of the active sites and amino acid sequences suggests that a conserved amino acid side chain (Arg185 in P. aeruginosa GMD) may be crucial for orienting substrate and cofactor in GMD enzymes. PMID:19459932

  14. The Staphylococcus aureus Protein-Coding Gene gdpS Modulates sarS Expression via mRNA-mRNA Interaction

    PubMed Central

    Chen, Chuan; Zhang, Xu; Shang, Fei; Sun, Haipeng

    2015-01-01

    Staphylococcus aureus is an important Gram-positive pathogen responsible for numerous diseases ranging from localized skin infections to life-threatening systemic infections. The virulence of S. aureus is essentially determined by a wide spectrum of factors, including cell wall-associated proteins and secreted toxins that are precisely controlled in response to environmental changes. GGDEF domain protein from Staphylococcus (GdpS) is the only conserved staphylococcal GGDEF domain protein that is involved not in c-di-GMP synthesis but in the virulence regulation of S. aureus NCTC8325. Our previous study showed that the inactivation of gdpS generates an extensive change of virulence factors together with, in particular, a major Spa (protein A) surface protein. As reported, sarS is a direct positive regulator of spa. The decreased transcript levels of sarS in the gdpS mutant compared with the parental NCTC8325 strain suggest that gdpS affects spa through interaction with sarS. In this study, site mutation and complementary experiments showed that the translation product of gdpS was not involved in the regulation of transcript levels of sarS. We found that gdpS functioned through direct RNA-RNA base pairing with the 5′ untranslated region (5′UTR) of sarS mRNA and that a putative 18-nucleotide region played a significant role in the regulatory process. Furthermore, the mRNA half-life analysis of sarS in the gdpS mutant showed that gdpS positively regulates the mRNA levels of sarS by contributing to the stabilization of sarS mRNA, suggesting that gdpS mRNA may regulate spa expression in an RNA-dependent pathway. PMID:26056387

  15. Characterization of a novel GDP-mannose:Serine-protein mannose-1-phosphotransferase from Leishmania mexicana.

    PubMed

    Moss, J M; Reid, G E; Mullin, K A; Zawadzki, J L; Simpson, R J; McConville, M J

    1999-03-01

    Protozoan parasites of the genus Leishmania secrete a number of glycoproteins and mucin-like proteoglycans that appear to be important parasite virulence factors. We have previously proposed that the polypeptide backbones of these molecules are extensively modified with a complex array of phosphoglycan chains that are linked to Ser/Thr-rich domains via a common Manalpha1-PO4-Ser linkage (Ilg, T., Overath, P., Ferguson, M. A. J., Rutherford, T., Campbell, D. G., and McConville, M. J. (1994) J. Biol. Chem. 269, 24073-24081). In this study, we show that Leishmania mexicana promastigotes contain a peptide-specific mannose-1-phosphotransferase (pep-MPT) activity that adds Manalpha1-P to serine residues in a range of defined peptides. The presence and location of the Manalpha1-PO4-Ser linkage in these peptides were determined by electrospray ionization mass spectrometry and chemical and enzymatic treatments. The pep-MPT activity was solubilized in non-ionic detergents, was dependent on Mn2+, utilized GDP-Man as the mannose donor, and was expressed in all developmental stages of the parasite. The pep-MPT activity was maximal against peptides containing Ser/Thr-rich domains of the endogenous acceptors and, based on competition assays with oligosaccharide acceptors, was distinct from other leishmanial MPTs involved in the initiation and elongation of lipid-linked phosphoglycan chains. In subcellular fractionation experiments, pep-MPT was resolved from the endoplasmic reticulum marker BiP, but had an overlapping distribution with the cis-Golgi marker Rab1. Although Man-PO4 residues in the mature secreted glycoproteins are extensively modified with mannose oligosaccharides and phosphoglycan chains, similar modifications were not added to peptide-linked Man-PO4 residues in the in vitro assays. Similarly, Man-PO4 residues on endogenous polypeptide acceptors were also poorly extended, although the elongating enzymes were still active, suggesting that the pep-MPT activity and

  16. MinC Protein Shortens FtsZ Protofilaments by Preferentially Interacting with GDP-bound Subunits*

    PubMed Central

    Hernández-Rocamora, Víctor M.; García-Montañés, Concepción; Reija, Belén; Monterroso, Begoña; Margolin, William; Alfonso, Carlos; Zorrilla, Silvia; Rivas, Germán

    2013-01-01

    The interaction of MinC with FtsZ and its effects on FtsZ polymerization were studied under close to physiological conditions by a combination of biophysical methods. The Min system is a widely conserved mechanism in bacteria that ensures the correct placement of the division machinery at midcell. MinC is the component of this system that effectively interacts with FtsZ and inhibits the formation of the Z-ring. Here we report that MinC produces a concentration-dependent reduction in the size of GTP-induced FtsZ protofilaments (FtsZ-GTP) as demonstrated by analytical ultracentrifugation, dynamic light scattering, fluorescence correlation spectroscopy, and electron microscopy. Our experiments show that, despite being shorter, FtsZ protofilaments maintain their narrow distribution in size in the presence of MinC. The protein had the same effect regardless of its addition prior to or after FtsZ polymerization. Fluorescence anisotropy measurements indicated that MinC bound to FtsZ-GDP with a moderate affinity (apparent KD ∼10 μm at 100 mm KCl and pH 7.5) very close to the MinC concentration corresponding to the midpoint of the inhibition of FtsZ assembly. Only marginal binding of MinC to FtsZ-GTP protofilaments was observed by analytical ultracentrifugation and fluorescence correlation spectroscopy. Remarkably, MinC effects on FtsZ-GTP protofilaments and binding affinity to FtsZ-GDP were strongly dependent on ionic strength, being severely reduced at 500 mm KCl compared with 100 mm KCl. Our results support a mechanism in which MinC interacts with FtsZ-GDP, resulting in smaller protofilaments of defined size and having the same effect on both preassembled and growing FtsZ protofilaments. PMID:23853099

  17. Exploring Patterns of Soil Organic Matter Decomposition with Students and the Public Through the Global Decomposition Project (GDP)

    NASA Astrophysics Data System (ADS)

    Wood, J. H.; Natali, S.

    2014-12-01

    The Global Decomposition Project (GDP) is a program designed to introduce and educate students and the general public about soil organic matter and decomposition through a standardized protocol for collecting, reporting, and sharing data. This easy-to-use hands-on activity focuses on questions such as "How do environmental conditions control decomposition of organic matter in soil?" and "Why do some areas accumulate organic matter and others do not?" Soil organic matter is important to local ecosystems because it affects soil structure, regulates soil moisture and temperature, and provides energy and nutrients to soil organisms. It is also important globally because it stores a large amount of carbon, and when microbes "eat", or decompose organic matter they release greenhouse gasses such as carbon dioxide and methane into the atmosphere, which affects the earth's climate. The protocol describes a commonly used method to measure decomposition using a paper made of cellulose, a component of plant cell walls. Participants can receive pre-made cellulose decomposition bags, or make decomposition bags using instructions in the protocol and easily obtained materials (e.g., window screen and lignin-free paper). Individual results will be shared with all participants and the broader public through an online database. We will present decomposition bag results from a research site in Alaskan tundra, as well as from a middle-school-student led experiment in California. The GDP demonstrates how scientific methods can be extended to educate broader audiences, while at the same time, data collected by students and the public can provide new insight into global patterns of soil decomposition. The GDP provides a pathway for scientists and educators to interact and reach meaningful education and research goals.

  18. Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states

    PubMed Central

    Yatime, Laure; Mechulam, Yves; Blanquet, Sylvain; Schmitt, Emmanuelle

    2007-01-01

    Initiation of translation in eukaryotes and in archaea involves eukaryotic/archaeal initiation factor (e/aIF)1 and the heterotrimeric initiation factor e/aIF2. In its GTP-bound form, e/aIF2 provides the initiation complex with Met–tRNAiMet. After recognition of the start codon by initiator tRNA, e/aIF1 leaves the complex. Finally, e/aIF2, now in a GDP-bound form, loses affinity for Met–tRNAiMet and dissociates from the ribosome. Here, we report a 3D structure of an aIF2 heterotrimer from the archeon Sulfolobus solfataricus obtained in the presence of GDP. Our report highlights how the two-switch regions involved in formation of the tRNA-binding site on subunit γ exchange conformational information with α and β. The zinc-binding domain of β lies close to the guanine nucleotide and directly contacts the switch 1 region. As a result, switch 1 adopts a not yet described conformation. Moreover, unexpectedly for a GDP-bound state, switch 2 has the “ON” conformation. The stability of these conformations is accounted for by a ligand, most probably a phosphate ion, bound near the nucleotide binding site. The structure suggests that this GDP–inorganic phosphate (Pi) bound state of aIF2 may be proficient for tRNA binding. Recently, it has been proposed that dissociation of eIF2 from the initiation complex is closely coupled to that of Pi from eIF2γ upon start codon recognition. The nucleotide state of aIF2 shown here is indicative of a similar mechanism in archaea. Finally, we consider the possibility that release of Pi takes place after e/aIF2γ has been informed of e/aIF1 dissociation by e/aIF2β. PMID:18000047

  19. Impact of GDP, Spending on R&D, Number of Universities and Scientific Journals on Research Publications among Asian Countries

    PubMed Central

    Meo, Sultan Ayoub; Al Masri, Abeer A.; Usmani, Adnan Mahmood; Memon, Almas Naeem; Zaidi, Syed Ziauddin

    2013-01-01

    Objectives This study aimed to compare the impact of Gross Domestic Product (GDP) per capita, spending on Research and Development (R&D), number of universities, and Indexed Scientific Journals on total number of research documents (papers), citations per document and Hirsch index (H-index) in various science and social science subjects among Asian countries. Materials and Methods In this study, 40 Asian countries were included. The information regarding Asian countries, their GDP per capita, spending on R&D, total number of universities and indexed scientific journals were collected. We recorded the bibliometric indicators, including total number of research documents, citations per document and H-index in various science and social sciences subjects during the period 1996–2011. The main sources for information were World Bank, SCI-mago/Scopus and Web of Science; Thomson Reuters. Results The mean per capita GDP for all the Asian countries is 14448.31±2854.40 US$, yearly per capita spending on R&D 0.64±0.16 US$, number of universities 72.37±18.32 and mean number of ISI indexed journal per country is 17.97±7.35. The mean of research documents published in various science and social science subjects among all the Asian countries during the period 1996–2011 is 158086.92±69204.09; citations per document 8.67±0.48; and H-index 122.8±19.21. Spending on R&D, number of universities and indexed journals have a positive correlation with number of published documents, citations per document and H-index in various science and social science subjects. However, there was no association between the per capita GDP and research outcomes. Conclusion The Asian countries who spend more on R&D have a large number of universities and scientific indexed journals produced more in research outcomes including total number of research publication, citations per documents and H-index in various science and social science subjects. PMID:23840471

  20. A GPR-protein interaction surface of Gi(alpha): implications for the mechanism of GDP-release inhibition.

    PubMed

    Natochin, Michael; Gasimov, Karim G; Artemyev, Nikolai O

    2002-01-01

    Proteins containing G-protein regulatory (GPR) motifs represent a novel family of guanine nucleotide dissociation inhibitors (GDIs) for G(alpha) subunits from the Gi family. They selectively interact with the GDP-bound conformation of Gi(alpha) and transducin-alpha (Gt(alpha)), but not with Gs(alpha). A series of chimeric proteins between Gi(alpha)(1) and Gs(alpha) has been constructed to investigate GPR-contact sites on G(alpha) subunits and the mechanism of GPR-protein GDI activity. Analysis of the interaction of two GPR-proteins-AGS3GPR and Pcp2-with the chimeric G(alpha) subunits demonstrated that the GPR-Gi(alpha)(1) interface involves the Gi(alpha)(1) switch regions and Gi(alpha)(1)-144-151, a site within the helical domain. Residues within Gi(alpha)(1)-144-151 form conformation-sensitive contacts with switch III, and may directly interact with a GPR-protein or form a GPR-binding surface jointly with switch III. The helical domain site is critical to the ability of GPR-proteins to act as GDIs. Our data suggest that a mechanism of the GDI activity of GPR-proteins is different from that of GDIs for monomeric GTPases and from the GDI-like activity of G(betagamma) subunits. The GPR-proteins are likely to block a GDP-escape route on G(alpha) subunits. PMID:11772024

  1. A presynaptic role for the ADP ribosylation factor (ARF)-specific GDP/GTP exchange factor msec7-1

    PubMed Central

    Ashery, Uri; Koch, Henriette; Scheuss, Volker; Brose, Nils; Rettig, Jens

    1999-01-01

    ADP ribosylation factors (ARFs) represent a family of small monomeric G proteins that switch from an inactive, GDP-bound state to an active, GTP-bound state. One member of this family, ARF6, translocates on activation from intracellular compartments to the plasma membrane and has been implicated in regulated exocytosis in neuroendocrine cells. Because GDP release in vivo is rather slow, ARF activation is facilitated by specific guanine nucleotide exchange factors like cytohesin-1 or ARNO. Here we show that msec7-1, a rat homologue of cytohesin-1, translocates ARF6 to the plasma membrane in living cells. Overexpression of msec7-1 leads to an increase in basal synaptic transmission at the Xenopus neuromuscular junction. msec7-1-containing synapses have a 5-fold higher frequency of spontaneous synaptic currents than control synapses. On stimulation, the amplitudes of the resulting evoked postsynaptic currents of msec7-1-overexpressing neurons are increased as well. However, further stimulation leads to a decline in amplitudes approaching the values of control synapses. This transient effect on amplitude is strongly reduced on overexpression of msec7-1E157K, a mutant incapable of translocating ARFs. Our results provide evidence that small G proteins of the ARF family and activating factors like msec7-1 play an important role in synaptic transmission, most likely by making more vesicles available for fusion at the plasma membrane. PMID:9927699

  2. Hierarchical structure of the European countries based on debts as a percentage of GDP during the 2000-2011 period

    NASA Astrophysics Data System (ADS)

    Kantar, Ersin; Deviren, Bayram; Keskin, Mustafa

    2014-11-01

    We investigate hierarchical structures of the European countries by using debt as a percentage of Gross Domestic Product (GDP) of the countries as they change over a certain period of time. We obtain the topological properties among the countries based on debt as a percentage of GDP of European countries over the period 2000-2011 by using the concept of hierarchical structure methods (minimal spanning tree, (MST) and hierarchical tree, (HT)). This period is also divided into two sub-periods related to 2004 enlargement of the European Union, namely 2000-2004 and 2005-2011, in order to test various time-window and observe the temporal evolution. The bootstrap techniques is applied to see a value of statistical reliability of the links of the MSTs and HTs. The clustering linkage procedure is also used to observe the cluster structure more clearly. From the structural topologies of these trees, we identify different clusters of countries according to their level of debts. Our results show that by the debt crisis, the less and most affected Eurozone’s economies are formed as a cluster with each other in the MSTs and hierarchical trees.

  3. Macro determinants of cause-specific injury mortality in the OECD countries: an exploration of the importance of GDP and unemployment.

    PubMed

    Muazzam, Sana; Nasrullah, Muazzam

    2011-08-01

    Gross Domestic Product (GDP) and unemployment has a strong documented impact on injury mortality. The aim of our study is to investigate the relationship of GDP per capita and unemployment with gender- and cause-specific injury mortalities in the member nations of Organization for Economic Cooperation and Development (OECD). Country-based data on injury mortality per 100,000 population, including males and females aged 1-74, for the 4 year period 1996-1999, were gathered from the World Health Organization's Statistical Information System. We selected fourteen cause-specific injury mortalities. Data on GDP, unemployment rate and population growth were taken from World Development Indicators. GDP and unemployment rate per 100 separately were regressed on total and cause-specific injury mortality rate per 100,000 for males and females. Overall in the OECD countries, GDP per capita increased 12.5% during 1996-1999 (P = 0.03) where as unemployment rate decreased by 12.3% (P = 0.05). Among males, most cause-specific injury mortality rates decreased with increasing GDP except motor vehicle traffic crashes (MTC) that increased with increasing GDP (coefficient = 0.75; P < 0.001). Similar trend was found in females, except suicidal injury mortalities that also increased with increasing GDP (coefficient = 0.31; P = 0.04). When we modeled cause-specific injury mortality rates with unemployment, injuries due to firearm missiles (coefficient = 0.53; P < 0.001), homicide (coefficient = 0.36; P < 0.001), and other violence (coefficient = 0.41; P < 0.001) increased with increase in unemployment rate among males. However, among females only accidental falls (coefficient = 0.36; P = 0.01) were found significantly associated with increasing unemployment rate. GDP is more related to cause-specific injury mortality than unemployment. Injury mortality does not relate similarly to each diagnosis-specific cause among males and females. Further research on

  4. Exploring Patterns of Soil Organic Matter Decomposition with Students through the Global Decomposition Project (GDP) and the Interactive Model of Leaf Decomposition (IMOLD)

    NASA Astrophysics Data System (ADS)

    Steiner, S. M.; Wood, J. H.

    2015-12-01

    As decomposition rates are affected by climate change, understanding crucial soil interactions that affect plant growth and decomposition becomes a vital part of contributing to the students' knowledge base. The Global Decomposition Project (GDP) is designed to introduce and educate students about soil organic matter and decomposition through a standardized protocol for collecting, reporting, and sharing data. The Interactive Model of Leaf Decomposition (IMOLD) utilizes animations and modeling to learn about the carbon cycle, leaf anatomy, and the role of microbes in decomposition. Paired together, IMOLD teaches the background information and allows simulation of numerous scenarios, and the GDP is a data collection protocol that allows students to gather usable measurements of decomposition in the field. Our presentation will detail how the GDP protocol works, how to obtain or make the materials needed, and how results will be shared. We will also highlight learning objectives from the three animations of IMOLD, and demonstrate how students can experiment with different climates and litter types using the interactive model to explore a variety of decomposition scenarios. The GDP demonstrates how scientific methods can be extended to educate broader audiences, and data collected by students can provide new insight into global patterns of soil decomposition. Using IMOLD, students will gain a better understanding of carbon cycling in the context of litter decomposition, as well as learn to pose questions they can answer with an authentic computer model. Using the GDP protocols and IMOLD provide a pathway for scientists and educators to interact and reach meaningful education and research goals.

  5. Defect in cell wall integrity of the yeast saccharomyces cerevisiae caused by a mutation of the GDP-mannose pyrophosphorylase gene VIG9.

    PubMed

    Yoda, K; Kawada, T; Kaibara, C; Fujie, A; Abe, M; Hitoshi; Hashimoto; Shimizu, J; Tomishige, N; Noda, Y; Yamasaki, M

    2000-09-01

    The Saccharomyces cerevisiae VIG9 gene encodes GDP-mannose pyrophosphorylase, which synthesizes GDP-mannose from GTP and mannose-1-phosphate. Although the null mutant was lethal, the vig9 mutants so far obtained showed no growth defect but immature protein glycosylation and drug hypersensitivity. During our search for cell-wall mutants, we found a novel temperature-sensitive mutant, JS30, which required an osmotic stabilizer for viability. JS30 excreted cell surface proteins in the medium without any indication of cell lysis. Although conventional genetic analysis using mating was impossible, by detailed characterization of JS30 including an in vitro enzyme assay and nucleotide sequencing, we found the defect of JS30 was due to a mutation in the VIG9 gene. These results indicated a critical role of GDP-mannose in maintenance of cell-wall integrity. PMID:11055399

  6. Clusters in weighted macroeconomic networks: the EU case. Introducing the overlapping index of GDP/capita fluctuation correlations

    NASA Astrophysics Data System (ADS)

    Gligor, M.; Ausloos, M.

    2008-06-01

    GDP/capita correlations are investigated in various time windows (TW), for the time interval 1990 2005. The target group of countries is the set of 25 EU members, 15 till 2004 plus the 10 countries which joined EU later on. The TW-means of the statistical correlation coefficients are taken as the weights (links) of a fully connected network having the countries as nodes. Thereafter we define and introduce the overlapping index of weighted network nodes. A cluster structure of EU countries is derived from the statistically relevant eigenvalues and eigenvectors of the adjacency matrix. This may be considered to yield some information about the structure, stability and evolution of the EU country clusters in a macroeconomic sense.

  7. Mutation in GDP-fucose synthesis genes of Sinorhizobium fredii alters Nod factors and significantly decreases competitiveness to nodulate soybeans.

    PubMed

    Lamrabet, Y; Bellogín, R A; Cubo, T; Espuny, R; Gil, A; Krishnan, H B; Megias, M; Ollero, F J; Pueppke, S G; Ruiz-Sainz, J E; Spaink, H P; Tejero-Mateo, P; Thomas-Oates, J; Vinardell, J M

    1999-03-01

    We mutagenized Sinorhizobium fredii HH103-1 with Tn5-B20 and screened about 2,000 colonies for increased beta-galactosidase activity in the presence of the flavonoid naringenin. One mutant, designated SVQ287, produces lipochitooligosaccharide Nod factors (LCOs) that differ from those of the parental strain. The nonreducing N-acetylglucosamine residues of all of the LCOs of mutant SVQ287 lack fucose and 2-O-methylfucose substituents. In addition, SVQ287 synthesizes an LCO with an unusually long, C20:1 fatty acyl side chain. The transposon insertion of mutant SVQ287 lies within a 1.1-kb HindIII fragment. This and an adjacent 2.4-kb HindIII fragment were sequenced. The sequence contains the 3' end of noeK, nodZ, and noeL (the gene interrupted by Tn5-B20), and the 5' end of nolK, all in the same orientation. Although each of these genes has a similarly oriented counterpart on the symbiosis plasmid of the broad-host-range Rhizobium sp. strain NGR234, there are significant differences in the noeK/nodZ intergenic region. Based on amino acid sequence homology, noeL encodes GDP-D-mannose dehydratase, an enzyme involved in the synthesis of GDP-L-fucose, and nolK encodes a NAD-dependent nucleotide sugar epimerase/dehydrogenase. We show that expression of the noeL gene is under the control of NodD1 in S. fredii and is most probably mediated by the nod box that precedes nodZ. Transposon insertion into neoL has two impacts on symbiosis with Williams soybean: nodulation rate is reduced slightly and competitiveness for nodulation is decreased significantly. Mutant SVQ287 retains its ability to form nitrogen-fixing nodules on other legumes, but final nodule number is attenuated on Cajanus cajan. PMID:10065558

  8. The Structure of the MUR1 GDP-mannose 4,67-deydratase from A. thaliana: Implications for Ligand Binding Specificity

    SciTech Connect

    Mulichak, A.M.; Bonin, C.P.; Reiter, W.-D.; Garavito, R.M.

    2010-03-08

    GDP-D-mannose 4,6-dehydratase catalyzes the first step in the de novo synthesis of GDP-L-fucose, the activated form of L-fucose, which is a component of glycoconjugates in plants known to be important to the development and strength of stem tissues. We have determined the three-dimensional structure of the MUR1 dehydratase isoform from Arabidopsis thaliana complexed with its NADPH cofactor as well as with the ligands GDP and GDP-D-rhamnose. MUR1 is a member of the nucleoside-diphosphosugar modifying subclass of the short-chain dehydrogenase/reductase enzyme family, having homologous structures and a conserved catalytic triad of Lys, Tyr, and Ser/Thr residues. MUR1 is the first member of this subfamily to be observed as a tetramer, the interface of which reveals a close and intimate overlap of neighboring NADP{sup +}-binding sites. The GDP moiety of the substrate also binds in an unusual syn conformation. The protein-ligand interactions around the hexose moiety of the substrate support the importance of the conserved triad residues and an additional Glu side chain serving as a general base for catalysis. Phe and Arg side chains close to the hexose ring may serve to confer substrate specificity at the O2 position. In the MUR1/GDP-D-rhamnose complex, a single unique monomer within the protein tetramer that has an unoccupied substrate site highlights the conformational changes that accompany substrate binding and may suggest the existence of negative cooperativity in MUR1 function.

  9. Novel protein and Mg[superscript 2+] configurations in the Mg[superscript 2+] GDP Complex of the SRP GTPase ffh

    SciTech Connect

    Focia, Pamela J.; Alam, Hena; Lu, Thanh; Ramirez, Ursula D.; Freymann, Douglas M.

    2010-03-05

    Ffh is the signal sequence recognition and targeting subunit of the prokaryotic signal recognition particle (SRP). Previous structural studies of the NG GTPase domain of Ffh demonstrated magnesium-dependent and magnesium-independent binding conformations for GDP and GMPPNP that are believed to reflect novel mechanisms for exchange and activation in this member of the GTPase superfamily. The current study of the NG GTPase bound to Mg{sup 2+} GDP reveals two new binding conformations - in the first the magnesium interactions are similar to those seen previously, however, the protein undergoes a conformational change that brings a conserved aspartate into its second coordination sphere. In the second, the protein conformation is similar to that seen previously, but the magnesium coordination sphere is disrupted so that only five oxygen ligands are present. The loss of the coordinating water molecule, at the position that would be occupied by the oxygen of the {gamma}-phosphate of GTP, is consistent with that position being privileged for exchange during phosphate release. The available structures of the GDP-bound protein provide a series of structural snapshots that illuminate steps along the pathway of GDP release following GTP hydrolysis.

  10. Concurrent IMRT and weekly cisplatin followed by GDP chemotherapy in newly diagnosed, stage IE to IIE, nasal, extranodal NK/T-Cell lymphoma.

    PubMed

    Ke, Q-H; Zhou, S-Q; Du, W; Liang, G; Lei, Y; Luo, F

    2014-01-01

    On the basis of the benefits of frontline radiation in early-stage, extranodal natural killer (NK)/T-cell lymphoma (ENKTL), we conducted the trial of concurrent chemoradiotherapy (CCRT) followed by three cycles of gemcitabine, dexamethasone and cisplatin (GDP). Thirty-two patients with newly diagnosed, stage IE to IIE, nasal ENKTL received CCRT (that is, all patients received intensity-modulated radiotherapy 56 Gy and cisplatin 30 mg/m(2) weekly, 3-5 weeks). Three cycles of GDP (gemcitabine 1000 mg/m(2) intravenously (i.v.) on days 1 and 8, dexamethasone 40 mg orally on days 1-4 and cisplatin 75 mg/m(2) i.v. on day 1 (GDP), every 21 days as an outpatient were scheduled after CCRT. All patients completed CCRT, which resulted in 100% response that included 24 complete responses (CRs) and eight partial responses. The CR rate after CCRT was 75.0% (that is, 24 of 32 responses). Twenty-eight of the 32 patients completed the planned three cycles of GDP, whereas four patients did not because they withdrew (n = 1) or because they had an infection (n = 3). The overall response rate and the CR rate were 90.6% (that is, 29 of 32 responses) and 84.4% (that is, 27 of 32 responses), respectively. Only two patient experienced grade 3 toxicity during CCRT (nausea), whereas 13 of the 30 patients experienced grade 4 neutropenia. The estimated 3-year overall survival and progression-free rates were 87.50% and 84.38%, respectively. In conclusion, CCRT followed by GDP chemotherapy can be a feasible and effective treatment strategy for stage IE to IIE nasal ENKTL. PMID:25501024

  11. Structural Studies of the Nudix GDP-mannose Hydrolase from E. coli Reveals a New Motif for Mannose Recognition

    PubMed Central

    Boto, Agedi N.; Xu, Wenlian; Jakoncic, Jean; Pannuri, Archana; Romeo, Tony; Bessman, Maurice J.; Gabelli, Sandra B.; Amzel, L. Mario

    2011-01-01

    The Nudix hydrolase superfamily, characterized by the presence of the signature sequence GX5EX7REUXEEXGU (where U is I, L, or V), is a well studied family in which relations have been established between primary sequence and substrate specificity for many members. For example, enzymes that hydrolyze the diphosphate linkage of ADP-ribose are characterized by having a proline 15 amino acids C-terminal of the Nudix signature sequence. GDPMK is a Nudix enzyme that conserves this characteristic proline but uses GDP-mannose as the preferred substrate. By investigating the structure of the GDPMK alone, bound to magnesium, and bound to substrate, the structural basis for this divergent substrate specificity and a new rule was identified by which ADP-ribose pyrophosphatases can be distinguished from Purine-DP-mannose pyrophosphatases from primary sequence alone. Kinetic and mutagenesis studies showed that GDPMK hydrolysis does not rely on a single glutamate as the catalytic base. Instead, catalysis is dependent on residues that coordinate the magnesium ions and residues that position the substrate properly for catalysis. GDPMK was thought to play a role in biofilm formation due to its upregulation in response to RcsC signalling; however, GDPMK knockout strains show no defect in their capacity of forming biofilms. PMID:21638333

  12. Structural Studies of the Nudix GDP-mannose Hydrolase from E. coli Reveals a New Motif for Mannose Recognition

    SciTech Connect

    A Boto; W Xu; J Jakoncic; A Pannuri; T Romeo; M Bessman; S Gabelli; L Amzel

    2011-12-31

    The Nudix hydrolase superfamily, characterized by the presence of the signature sequence GX5EX7REUXEEXGU (where U is I, L, or V), is a well-studied family in which relations have been established between primary sequence and substrate specificity for many members. For example, enzymes that hydrolyze the diphosphate linkage of ADP-ribose are characterized by having a proline 15 amino acids C-terminal of the Nudix signature sequence. GDPMK is a Nudix enzyme that conserves this characteristic proline but uses GDP-mannose as the preferred substrate. By investigating the structure of the GDPMK alone, bound to magnesium, and bound to substrate, the structural basis for this divergent substrate specificity and a new rule was identified by which ADP-ribose pyrophosphatases can be distinguished from purine-DP-mannose pyrophosphatases from primary sequence alone. Kinetic and mutagenesis studies showed that GDPMK hydrolysis does not rely on a single glutamate as the catalytic base. Instead, catalysis is dependent on residues that coordinate the magnesium ions and residues that position the substrate properly for catalysis. GDPMK was thought to play a role in biofilm formation because of its upregulation in response to RcsC signaling; however, GDPMK knockout strains show no defect in their capacity of forming biofilms.

  13. Leishmania donovani lacking the Golgi GDP-Man transporter LPG2 exhibit attenuated virulence in mammalian hosts.

    PubMed

    Gaur, Upasna; Showalter, Melissa; Hickerson, Suzanne; Dalvi, Rahul; Turco, Salvatore J; Wilson, Mary E; Beverley, Stephen M

    2009-07-01

    Surface phosophoglycans such as lipophosphoglycan (LPG) or proteophosphoglycan (PPG) and glycosylinositol phospholipids (GIPLs) modulate essential interactions between Leishmania and mammalian macrophages. Phosphoglycan synthesis depends on the Golgi GDP-mannose transporter encoded by LPG2. LPG2-null (lpg2(-)) Leishmania major cannot establish macrophage infections or induce acute pathology, whereas lpg2(-)Leishmania mexicana retain virulence. lpg2(-)Leishmania donovani has been reported to survive poorly in cultured macrophages but in vivo survival has not been explored. Herein we discovered that, similar to lpg2(-)L. major, lpg2(-)L. donovani promastigotes exhibited diminished virulence in mice, but persisted at consistently low levels. lpg2(-)L. donovani promastigotes could not establish infection in macrophages and could not transiently inhibit phagolysosomal fusion. Furthermore, lpg2(-) promastigotes of L. major, L. donovani and L. mexicana were highly susceptible to complement-mediated lysis. We conclude that phosphoglycan assembly and expression mediated by L. donovani LPG2 are important for promastigote and amastigote virulence, unlike L. mexicana but similar to L. major. PMID:19328787

  14. Leishmania donovani lacking the Golgi GDP-Man transporter LPG2 exhibit attenuated virulence in mammalian hosts

    PubMed Central

    Gaur, Upasna; Showalter, Melissa; Hickerson, Suzanne; Dalvi, Rahul; Turco, Salvatore J.; Wilson, Mary E.; Beverley, Stephen M.

    2009-01-01

    Surface phosophoglycans such as lipophosphoglycan (LPG) or proteophosphoglycan (PPG) and glycosylinositol phospholipids (GIPLs) modulate essential interactions between Leishmania and mammalian macrophages. Phosphoglycan synthesis depends on the Golgi GDP-mannose transporter encoded by LPG2. LPG2-null (lpg2−) L. major cannot establish macrophage infections or induce acute pathology, whereas lpg2− L. mexicana retain virulence. lpg2− L. donovani has been reported to survive poorly in cultured macrophages but in vivo survival has not been explored. Herein we discovered that, similar to lpg2− L. major, lpg2− L. donovani promastigotes exhibited diminished virulence in mice, but persisted at consistently low levels. lpg2− L. donovani promastigotes could not establish infections macrophages and could not transiently inhibit phagolysosomal fusion. Furthermore, lpg2− promastigotes of L. major, L. donovani and L. mexicana were highly susceptible to complement mediated lysis. We conclude that phosphoglycan assembly and expression mediated by L. donovani LPG2 are important for promastigote and amastigote virulence, unlike L. mexicana but similar to L. major. PMID:19328787

  15. Varying electric charge in multiscale spacetimes

    NASA Astrophysics Data System (ADS)

    Calcagni, Gianluca; Magueijo, João; Fernández, David Rodríguez

    2014-01-01

    We derive the covariant equations of motion for Maxwell field theory and electrodynamics in multiscale spacetimes with weighted Laplacian. An effective spacetime-dependent electric charge of geometric origin naturally emerges from the theory, thus giving rise to a varying fine-structure constant. The theory is compared with other varying-coupling models, such as those with a varying electric charge or varying speed of light. The theory is also confronted with cosmological observations, which can place constraints on the characteristic scales in the multifractional measure. We note that the model considered here is fundamentally different from those previously proposed in the literature, either of the varying-e or varying-c persuasion.

  16. Genetic Evidence for Phospholipid-Mediated Regulation of the Rab GDP-Dissociation Inhibitor in Fission Yeast

    PubMed Central

    Ma, Yan; Kuno, Takayoshi; Kita, Ayako; Nabata, Toshiya; Uno, Satoshi; Sugiura, Reiko

    2006-01-01

    We have previously identified mutant alleles of genes encoding two Rab proteins, Ypt3 and Ryh1, through a genetic screen using the immunosuppressant drug FK506 in fission yeast. In the same screen, we isolated gdi1-i11, a mutant allele of the essential gdi1+ gene encoding Rab GDP-dissociation inhibitor. In gdi1-i11, a conserved Gly267 was substituted by Asp. The Gdi1G267D protein failed to extract Rabs from membrane and Rabs were depleted from the cytosolic fraction in the gdi1-i11 mutant cells. Consistently, the Gdi1G267D protein was found mostly in the membrane fraction, whereas wild-type Gdi1 was found in both the cytosolic and the membrane fraction. Notably, overexpression of spo20+, encoding a phosphatidylcholine/phosphatidylinositol transfer protein, rescued gdi1-i11 mutation, but not ypt3-i5 or ryh1-i6. The gdi1-i11 and spo20-KC104 mutations are synthetically lethal, and the wild-type Gdi1 failed to extract Rabs from the membrane in the spo20-KC104 mutant. The phosphatidylinositol-transfer activity of Spo20 is dispensable for the suppression of the gdi1-i11 mutation, suggesting that the phosphatidylcholine-transfer activity is important for the suppression. Furthermore, knockout of the pct1+ gene encoding a choline phosphate cytidyltransferase rescued the gdi1-i11 mutation. Together, our findings suggest that Spo20 modulates Gdi1 function via regulation of phospholipid metabolism of the membranes. PMID:16980382

  17. Distinct protein domains of the yeast Golgi GDP-mannose transporter mediate oligomer assembly and export from the endoplasmic reticulum.

    PubMed

    Gao, X D; Dean, N

    2000-06-01

    The substrates for glycan synthesis in the lumen of the Golgi are nucleotide sugars that must be transported from the cytosol by specific membrane-bound transporters. The principal nucleotide sugar used for glycosylation in the Golgi of the yeast Saccharomyces cerevisiae is GDP-mannose, whose lumenal transport is mediated by the VRG4 gene product. As the sole provider of lumenal mannose, the Vrg4 protein functions as a key regulator of glycosylation in the yeast Golgi. We have undertaken a functional analysis of Vrg4p as a model for understanding nucleotide sugar transport in the Golgi. Here, we analyzed epitope-tagged alleles of VRG4. Gel filtration chromatography and co-immunoprecipitation experiments demonstrate that the Vrg4 protein forms homodimers with specificity and high affinity. Deletion analyses identified two regions essential for Vrg4p function. Mutant Vrg4 proteins lacking the predicted C-terminal membrane-spanning domain fail to assemble into oligomers (Abe, M., Hashimoto, H., and Yoda, K. (1999) FEBS Lett. 458, 309-312) and are unstable, while proteins lacking the N-terminal cytosolic tail are stable and multimerize efficiently, but are mislocalized to the endoplasmic reticulum (ER). Fusion of the N terminus of Vrg4p to related ER membrane proteins promote their transport to the Golgi, suggesting that sequences in the N terminus supply information for ER export. The dominant negative phenotype resulting from overexpression of truncated Vrg4-DeltaN proteins provides strong genetic evidence for homodimer formation in vivo. These studies are consistent with a model in which Vrg4p oligomerizes in the ER and is subsequently transported to the Golgi via a mechanism that involves positive sorting rather than passive default. PMID:10748175

  18. The biosynthesis of GDP-L-colitose: C-3 deoxygenation is catalyzed by a unique coenzyme B6-dependent enzyme.

    PubMed

    Beyer, Noelle; Alam, Jenefer; Hallis, Tina M; Guo, Zhihong; Liu, Hung-wen

    2003-05-14

    l-Colitose (1) is a 3,6-dideoxyhexose found in the O-antigen of gram-negative lipopoly-saccharides. While the biosynthesis of many deoxysugars have previously been investigated, l-colitose is distinct in that it originates from GDP-d-mannose. In contrast, other 3,6-dideoxyhexoses arise from CDP-d-glucose. Therefore, the enzymes involved in the l-colitose biosynthetic pathway must be specifically tailored to utilize such a modified substrate. The mode for deoxygenation at C-3 of colitose is of particular interest because this conversion in other naturally occurring 3,6-dideoxyhexoses requires a pair of enzymes, E1 and E3, acting in concert. Interestingly, no E3 equivalent was identified in the five open reading frames of the col biosynthetic gene cluster from Yersinia pseudotuberculosis IVA. However, the gene product of colD showed moderate similarity with the E1 gene (ddhC/ascC) of the ascarylose pathway (27% identity and 42% similarity). Because E1 is a pyridoxamine 5'-phosphate (PMP)-dependent enzyme, it was thought that ColD might also utilize PMP. Indeed, turnover was observed during incubation of ColD with substrate in the presence of excess PMP, but not with pyridoxal 5'-phosphate (PLP). However, the rate of product formation increased by more than 40-fold when l-glutamate was included in the PLP incubation. The formation of alpha-ketoglutarate as a byproduct under these conditions clearly indicated that ColD functions as a transaminase, recognizing both PMP and PLP. In this paper, we propose a novel biosynthetic route for colitose, including the unprecedented C-3 deoxygenation performed solely by ColD. The utilization of PMP in a dehydration reaction is rare, but the combined deoxygenation-transamination activity makes ColD a unique enzyme. PMID:12733868

  19. Fractal analysis of time varying data

    DOEpatents

    Vo-Dinh, Tuan; Sadana, Ajit

    2002-01-01

    Characteristics of time varying data, such as an electrical signal, are analyzed by converting the data from a temporal domain into a spatial domain pattern. Fractal analysis is performed on the spatial domain pattern, thereby producing a fractal dimension D.sub.F. The fractal dimension indicates the regularity of the time varying data.

  20. EF-Tu dynamics during pre-translocation complex formation: EF-Tu·GDP exits the ribosome via two different pathways

    PubMed Central

    Liu, Wei; Chen, Chunlai; Kavaliauskas, Darius; Knudsen, Charlotte R.; Goldman, Yale E.; Cooperman, Barry S.

    2015-01-01

    The G-protein EF-Tu, which undergoes a major conformational change when EF-Tu·GTP is converted to EF-Tu·GDP, forms part of an aminoacyl(aa)-tRNA·EF-Tu·GTP ternary complex (TC) that accelerates the binding of aa-tRNA to the ribosome during peptide elongation. Such binding, placing a portion of EF-Tu in contact with the GTPase Associated Center (GAC), is followed by GTP hydrolysis and Pi release, and results in formation of a pretranslocation (PRE) complex. Although tRNA movement through the ribosome during PRE complex formation has been extensively studied, comparatively little is known about the dynamics of EF-Tu interaction with either the ribosome or aa-tRNA. Here we examine these dynamics, utilizing ensemble and single molecule assays employing fluorescent labeled derivatives of EF-Tu, tRNA, and the ribosome to measure changes in either FRET efficiency or fluorescence intensity during PRE complex formation. Our results indicate that ribosome-bound EF-Tu separates from the GAC prior to its full separation from aa-tRNA, and suggest that EF-Tu·GDP dissociates from the ribosome by two different pathways. These pathways correspond to either reversible EF-Tu·GDP dissociation from the ribosome prior to the major conformational change in EF-Tu that follows GTP hydrolysis, or irreversible dissociation after or concomitant with this conformational change. PMID:26338772

  1. UK and Twenty Comparable Countries GDP-Expenditure-on-Health 1980-2013: The Historic and Continued Low Priority of UK Health-Related Expenditure

    PubMed Central

    Harding, Andrew J.E.; Pritchard, Colin

    2016-01-01

    It is well-established that for a considerable period the United Kingdom has spent proportionally less of its gross domestic product (GDP) on health-related services than almost any other comparable country. Average European spending on health (as a % of GDP) in the period 1980 to 2013 has been 19% higher than the United Kingdom, indicating that comparable countries give far greater fiscal priority to its health services, irrespective of its actual fiscal value or configuration. While the UK National Health Service (NHS) is a comparatively lean healthcare system, it is often regarded to be at a ‘crisis’ point on account of low levels of funding. Indeed, many state that currently the NHS has a sizeable funding gap, in part due to its recently reduced GDP devoted to health but mainly the challenges around increases in longevity, expectation and new medical costs. The right level of health funding is a political value judgement. As the data in this paper outline, if the UK ‘afforded’ the same proportional level of funding as the mean average European country, total expenditure would currently increase by one-fifth.

  2. Mutations in GDP-Mannose Pyrophosphorylase B Cause Congenital and Limb-Girdle Muscular Dystrophies Associated with Hypoglycosylation of α-Dystroglycan

    PubMed Central

    Carss, Keren J.; Stevens, Elizabeth; Foley, A. Reghan; Cirak, Sebahattin; Riemersma, Moniek; Torelli, Silvia; Hoischen, Alexander; Willer, Tobias; van Scherpenzeel, Monique; Moore, Steven A.; Messina, Sonia; Bertini, Enrico; Bönnemann, Carsten G.; Abdenur, Jose E.; Grosmann, Carla M.; Kesari, Akanchha; Punetha, Jaya; Quinlivan, Ros; Waddell, Leigh B.; Young, Helen K.; Wraige, Elizabeth; Yau, Shu; Brodd, Lina; Feng, Lucy; Sewry, Caroline; MacArthur, Daniel G.; North, Kathryn N.; Hoffman, Eric; Stemple, Derek L.; Hurles, Matthew E.; van Bokhoven, Hans; Campbell, Kevin P.; Lefeber, Dirk J.; Lin, Yung-Yao; Muntoni, Francesco

    2013-01-01

    Congenital muscular dystrophies with hypoglycosylation of α-dystroglycan (α-DG) are a heterogeneous group of disorders often associated with brain and eye defects in addition to muscular dystrophy. Causative variants in 14 genes thought to be involved in the glycosylation of α-DG have been identified thus far. Allelic mutations in these genes might also cause milder limb-girdle muscular dystrophy phenotypes. Using a combination of exome and Sanger sequencing in eight unrelated individuals, we present evidence that mutations in guanosine diphosphate mannose (GDP-mannose) pyrophosphorylase B (GMPPB) can result in muscular dystrophy variants with hypoglycosylated α-DG. GMPPB catalyzes the formation of GDP-mannose from GTP and mannose-1-phosphate. GDP-mannose is required for O-mannosylation of proteins, including α-DG, and it is the substrate of cytosolic mannosyltransferases. We found reduced α-DG glycosylation in the muscle biopsies of affected individuals and in available fibroblasts. Overexpression of wild-type GMPPB in fibroblasts from an affected individual partially restored glycosylation of α-DG. Whereas wild-type GMPPB localized to the cytoplasm, five of the identified missense mutations caused formation of aggregates in the cytoplasm or near membrane protrusions. Additionally, knockdown of the GMPPB ortholog in zebrafish caused structural muscle defects with decreased motility, eye abnormalities, and reduced glycosylation of α-DG. Together, these data indicate that GMPPB mutations are responsible for congenital and limb-girdle muscular dystrophies with hypoglycosylation of α-DG. PMID:23768512

  3. GDP beta S enhances the activation of phospholipase C caused by thrombin in human platelets: evidence for involvement of an inhibitory GTP-binding protein

    SciTech Connect

    Oberdisse, E.; Lapetina, E.G.

    1987-05-14

    Guanosine 5'-O-thiotriphosphate (GTP gamma S) and thrombin stimulate the activity of phospholipase C in platelets that have been permeabilized with saponin and whose inositol phospholipids have been prelabeled with (/sup 3/H)inositol. Ca/sup 2 +/ has opposite effects on the formation of (/sup 3/H)inositol phosphates induced by thrombin or GTP gamma S. While the action of GTP gamma S on the formation of (/sup 3/H)inositol phosphates is inhibited by Ca/sup 2 +/, action of thrombin is stimulated by Ca/sup 2 +/. Guanosine 5'-O-(2-thiodiphosphate) (GDP beta S), which inhibits the function of GTP-binding proteins, also inhibits the effect of GTP gamma S on phospholipase C stimulation but, surprisingly, increases the effect of thrombin. Ca/sup 2 +/ increases the inhibitory effect of GDP beta S on GTP gamma S activation of phospholipase C, but Ca/sup 2 +/ further enhances the stimulatory effect of GDP beta S on the thrombin activation of phospholipase C. This indicates that two mechanisms are responsible for the activation of phospholipase C in platelets. A GTP-binding protein is responsible for regulation of phospholipase C induced by GTP gamma S, while the effect of thrombin on the stimulation of phospholipase C is independent of GTP-binding proteins. However, the effect of thrombin may be modulated by the action of an inhibitory GTP-binding protein.

  4. Statistical Methods with Varying Coefficient Models

    PubMed Central

    Fan, Jianqing; Zhang, Wenyang

    2008-01-01

    The varying coefficient models are very important tool to explore the dynamic pattern in many scientific areas, such as economics, finance, politics, epidemiology, medical science, ecology and so on. They are natural extensions of classical parametric models with good interpretability and are becoming more and more popular in data analysis. Thanks to their flexibility and interpretability, in the past ten years, the varying coefficient models have experienced deep and exciting developments on methodological, theoretical and applied sides. This paper gives a selective overview on the major methodological and theoretical developments on the varying coefficient models. PMID:18978950

  5. Childhood Sleep Guidelines Vary by Age

    MedlinePlus

    ... nih.gov/medlineplus/news/fullstory_159342.html Childhood Sleep Guidelines Vary by Age Right amount leads to ... June 13, 2016 (HealthDay News) -- A good night's sleep makes for perkier, better-behaved children. But how ...

  6. Childhood Sleep Guidelines Vary by Age

    MedlinePlus

    ... https://medlineplus.gov/news/fullstory_159342.html Childhood Sleep Guidelines Vary by Age Right amount leads to ... June 13, 2016 (HealthDay News) -- A good night's sleep makes for perkier, better-behaved children. But how ...

  7. GDP-L-fucose: .beta.-D-galactoside 2-.alpha.-L-fucosyltransferases, DNA sequences encoding the same, method for producing the same and a method of genotyping a person

    DOEpatents

    Lowe, John B.; Lennon, Gregory; Rouquier, Sylvie; Giorgi, Dominique; Kelly, Robert J.

    1998-01-01

    The gene encoding GDP-L-fucose: .beta.-D-Galactoside 2-.alpha.-L-fucosyltransferase has been cloned, and a mutation in this gene has been found to be responsible for an individual being a non-secretor.

  8. GDP-L-fucose: {beta}-D-galactoside 2-{alpha}-Lfucosyltransferases, DNA sequences encoding the same, method for producing the same and a method of genotyping a person

    DOEpatents

    Lowe, J.B.; Lennon, G.; Rouquier, S.; Giorgi, D.; Kelly, R.J.

    1998-09-15

    The gene encoding GDP-L-fucose: {beta}-D-Galactoside 2-{alpha}-Lfucosyltransferase has been cloned, and a mutation in this gene has been found to be responsible for an individual being a non-secretor. 30 figs.

  9. Effect modification by time-varying covariates.

    PubMed

    Robins, James M; Hernán, Miguel A; Rotnitzky, Andrea

    2007-11-01

    Marginal structural models (MSMs) allow estimation of effect modification by baseline covariates, but they are less useful for estimating effect modification by evolving time-varying covariates. Rather, structural nested models (SNMs) were specifically designed to estimate effect modification by time-varying covariates. In their paper, Petersen et al. (Am J Epidemiol 2007;166:985-993) describe history-adjusted MSMs as a generalized form of MSM and argue that history-adjusted MSMs allow a researcher to easily estimate effect modification by time-varying covariates. However, history-adjusted MSMs can result in logically incompatible parameter estimates and hence in contradictory substantive conclusions. Here the authors propose a more restrictive definition of history-adjusted MSMs than the one provided by Petersen et al. and compare the advantages and disadvantages of using history-adjusted MSMs, as opposed to SNMs, to examine effect modification by time-dependent covariates. PMID:17875581

  10. Varying G. [in Einstein gravitation theory

    NASA Technical Reports Server (NTRS)

    Canuto, V.; Hsieh, S.-H.; Owen, J. R.

    1979-01-01

    The problem of the variation of the gravitational constant with cosmological time is critically analyzed. Since Einstein's equation does not allow G to vary on any time scale, no observational data can be analyzed within the context of the standard theory. The recently proposed scale covariant theory, which allows (but does not demand) G to vary, and which has been shown to have passed several standard cosmological tests, is employed to discuss some recent nonnull observational results which indicate a time variation of G.

  11. Two tomato GDP-D-mannose epimerase isoforms involved in ascorbate biosynthesis play specific roles in cell wall biosynthesis and development

    PubMed Central

    Mounet-Gilbert, Louise; Dumont, Marie; Ferrand, Carine; Bournonville, Céline; Monier, Antoine; Jorly, Joana; Lemaire-Chamley, Martine; Mori, Kentaro; Atienza, Isabelle; Hernould, Michel; Stevens, Rebecca; Lehner, Arnaud; Mollet, Jean Claude; Rothan, Christophe; Lerouge, Patrice; Baldet, Pierre

    2016-01-01

    GDP-D-mannose epimerase (GME, EC 5.1.3.18) converts GDP-D-mannose to GDP-L-galactose, and is considered to be a central enzyme connecting the major ascorbate biosynthesis pathway to primary cell wall metabolism in higher plants. Our previous work demonstrated that GME is crucial for both ascorbate and cell wall biosynthesis in tomato. The aim of the present study was to investigate the respective role in ascorbate and cell wall biosynthesis of the two SlGME genes present in tomato by targeting each of them through an RNAi-silencing approach. Taken individually SlGME1 and SlGME2 allowed normal ascorbate accumulation in the leaf and fruits, thus suggesting the same function regarding ascorbate. However, SlGME1 and SlGME2 were shown to play distinct roles in cell wall biosynthesis, depending on the tissue considered. The RNAi-SlGME1 plants harbored small and poorly seeded fruits resulting from alterations of pollen development and of pollination process. In contrast, the RNAi-SlGME2 plants exhibited vegetative growth delay while fruits remained unaffected. Analysis of SlGME1- and SlGME2-silenced seeds and seedlings further showed that the dimerization state of pectin rhamnogalacturonan-II (RG-II) was altered only in the RNAi-SlGME2 lines. Taken together with the preferential expression of each SlGME gene in different tomato tissues, these results suggest sub-functionalization of SlGME1 and SlGME2 and their specialization for cell wall biosynthesis in specific tomato tissues. PMID:27382114

  12. National Income Inequality and Declining GDP Growth Rates Are Associated with Increases in HIV Diagnoses among People Who Inject Drugs in Europe: A Panel Data Analysis

    PubMed Central

    Nikolopoulos, Georgios K.; Fotiou, Anastasios; Kanavou, Eleftheria; Richardson, Clive; Detsis, Marios; Pharris, Anastasia; Suk, Jonathan E.; Semenza, Jan C.; Costa-Storti, Claudia; Paraskevis, Dimitrios; Sypsa, Vana; Malliori, Melpomeni-Minerva; Friedman, Samuel R.; Hatzakis, Angelos

    2015-01-01

    Background There is sparse evidence that demonstrates the association between macro-environmental processes and drug-related HIV epidemics. The present study explores the relationship between economic, socio-economic, policy and structural indicators, and increases in reported HIV infections among people who inject drugs (PWID) in the European Economic Area (EEA). Methods We used panel data (2003–2012) for 30 EEA countries. Statistical analyses included logistic regression models. The dependent variable was taking value 1 if there was an outbreak (significant increase in the national rate of HIV diagnoses in PWID) and 0 otherwise. Explanatory variables included the growth rate of Gross Domestic Product (GDP), the share of the population that is at risk for poverty, the unemployment rate, the Eurostat S80/S20 ratio, the Gini coefficient, the per capita government expenditure on health and social protection, and variables on drug control policy and drug-using population sizes. Lags of one to three years were investigated. Findings In multivariable analyses, using two-year lagged values, we found that a 1% increase of GDP was associated with approximately 30% reduction in the odds of an HIV outbreak. In GDP-adjusted analyses with three-year lagged values, the effect of the national income inequality on the likelihood of an HIV outbreak was significant [S80/S20 Odds Ratio (OR) = 3.89; 95% Confidence Interval (CI): 1.15 to 13.13]. Generally, the multivariable analyses produced similar results across three time lags tested. Interpretation Given the limitations of ecological research, we found that declining economic growth and increasing national income inequality were associated with an elevated probability of a large increase in the number of HIV diagnoses among PWID in EEA countries during the last decade. HIV prevention may be more effective if developed within national and European-level policy contexts that promote income equality, especially among vulnerable

  13. Two tomato GDP-D-mannose epimerase isoforms involved in ascorbate biosynthesis play specific roles in cell wall biosynthesis and development.

    PubMed

    Mounet-Gilbert, Louise; Dumont, Marie; Ferrand, Carine; Bournonville, Céline; Monier, Antoine; Jorly, Joana; Lemaire-Chamley, Martine; Mori, Kentaro; Atienza, Isabelle; Hernould, Michel; Stevens, Rebecca; Lehner, Arnaud; Mollet, Jean Claude; Rothan, Christophe; Lerouge, Patrice; Baldet, Pierre

    2016-08-01

    GDP-D-mannose epimerase (GME, EC 5.1.3.18) converts GDP-D-mannose to GDP-L-galactose, and is considered to be a central enzyme connecting the major ascorbate biosynthesis pathway to primary cell wall metabolism in higher plants. Our previous work demonstrated that GME is crucial for both ascorbate and cell wall biosynthesis in tomato. The aim of the present study was to investigate the respective role in ascorbate and cell wall biosynthesis of the two SlGME genes present in tomato by targeting each of them through an RNAi-silencing approach. Taken individually SlGME1 and SlGME2 allowed normal ascorbate accumulation in the leaf and fruits, thus suggesting the same function regarding ascorbate. However, SlGME1 and SlGME2 were shown to play distinct roles in cell wall biosynthesis, depending on the tissue considered. The RNAi-SlGME1 plants harbored small and poorly seeded fruits resulting from alterations of pollen development and of pollination process. In contrast, the RNAi-SlGME2 plants exhibited vegetative growth delay while fruits remained unaffected. Analysis of SlGME1- and SlGME2-silenced seeds and seedlings further showed that the dimerization state of pectin rhamnogalacturonan-II (RG-II) was altered only in the RNAi-SlGME2 lines. Taken together with the preferential expression of each SlGME gene in different tomato tissues, these results suggest sub-functionalization of SlGME1 and SlGME2 and their specialization for cell wall biosynthesis in specific tomato tissues. PMID:27382114

  14. Chiral Sensor for Enantiodiscrimination of Varied Acids.

    PubMed

    Huang, Huayin; Bian, Guangling; Zong, Hua; Wang, Yabai; Yang, Shiwei; Yue, Huifeng; Song, Ling; Fan, Hongjun

    2016-06-01

    A chiral thiophosphoroamide 4 derived from (1R,2R)-1,2-diaminocyclohexane is used as a highly effective chiral sensor for the chiral recognition of varied acids via ion-pairing and hydrogen-bonding interactions using (1)H, (19)F and (31)P NMR. PMID:27192021

  15. Regularizing cosmological singularities by varying physical constants

    SciTech Connect

    Dąbrowski, Mariusz P.; Marosek, Konrad E-mail: k.marosek@wmf.univ.szczecin.pl

    2013-02-01

    Varying physical constant cosmologies were claimed to solve standard cosmological problems such as the horizon, the flatness and the Λ-problem. In this paper, we suggest yet another possible application of these theories: solving the singularity problem. By specifying some examples we show that various cosmological singularities may be regularized provided the physical constants evolve in time in an appropriate way.

  16. Relaxation Assessment with Varied Structured Milieu (RELAX).

    ERIC Educational Resources Information Center

    Cassel, Russell N.; Cassel, Susie L.

    1983-01-01

    Describes Relaxation Assessment with Varied Structured Milieu (RELAX), a clinical program designed to assess the degree to which an individual is able to demonstrate self-control for overall general relaxation. The program is designed for use with the Cassel Biosensors biofeedback equipment. (JAC)

  17. The Varied Uses of Readability Measurement.

    ERIC Educational Resources Information Center

    Fry, Edward

    Readability formulas have varied uses. In education they are used to match children's reading ability to the difficulty level of material, select stories and books for classroom use and for individual students' particular needs, select textbooks and other reading materials, aid educational research, and check reading materials of newly literate…

  18. Components in time-varying graphs.

    PubMed

    Nicosia, Vincenzo; Tang, John; Musolesi, Mirco; Russo, Giovanni; Mascolo, Cecilia; Latora, Vito

    2012-06-01

    Real complex systems are inherently time-varying. Thanks to new communication systems and novel technologies, today it is possible to produce and analyze social and biological networks with detailed information on the time of occurrence and duration of each link. However, standard graph metrics introduced so far in complex network theory are mainly suited for static graphs, i.e., graphs in which the links do not change over time, or graphs built from time-varying systems by aggregating all the links as if they were concurrent in time. In this paper, we extend the notion of connectedness, and the definitions of node and graph components, to the case of time-varying graphs, which are represented as time-ordered sequences of graphs defined over a fixed set of nodes. We show that the problem of finding strongly connected components in a time-varying graph can be mapped into the problem of discovering the maximal-cliques in an opportunely constructed static graph, which we name the affine graph. It is, therefore, an NP-complete problem. As a practical example, we have performed a temporal component analysis of time-varying graphs constructed from three data sets of human interactions. The results show that taking time into account in the definition of graph components allows to capture important features of real systems. In particular, we observe a large variability in the size of node temporal in- and out-components. This is due to intrinsic fluctuations in the activity patterns of individuals, which cannot be detected by static graph analysis. PMID:22757508

  19. Components in time-varying graphs

    NASA Astrophysics Data System (ADS)

    Nicosia, Vincenzo; Tang, John; Musolesi, Mirco; Russo, Giovanni; Mascolo, Cecilia; Latora, Vito

    2012-06-01

    Real complex systems are inherently time-varying. Thanks to new communication systems and novel technologies, today it is possible to produce and analyze social and biological networks with detailed information on the time of occurrence and duration of each link. However, standard graph metrics introduced so far in complex network theory are mainly suited for static graphs, i.e., graphs in which the links do not change over time, or graphs built from time-varying systems by aggregating all the links as if they were concurrent in time. In this paper, we extend the notion of connectedness, and the definitions of node and graph components, to the case of time-varying graphs, which are represented as time-ordered sequences of graphs defined over a fixed set of nodes. We show that the problem of finding strongly connected components in a time-varying graph can be mapped into the problem of discovering the maximal-cliques in an opportunely constructed static graph, which we name the affine graph. It is, therefore, an NP-complete problem. As a practical example, we have performed a temporal component analysis of time-varying graphs constructed from three data sets of human interactions. The results show that taking time into account in the definition of graph components allows to capture important features of real systems. In particular, we observe a large variability in the size of node temporal in- and out-components. This is due to intrinsic fluctuations in the activity patterns of individuals, which cannot be detected by static graph analysis.

  20. The R6A-1 peptide binds to switch II of G{alpha}{sub i1} but is not a GDP-dissociation inhibitor

    SciTech Connect

    Willard, Francis S. . E-mail: fwillard@med.unc.edu; Siderovski, David P.

    2006-01-27

    Heterotrimeric G-proteins are molecular switches that convert signals from membrane receptors into changes in intracellular physiology. Recently, several peptides that bind heterotrimeric G-protein {alpha} subunits have been isolated including the novel G{alpha}{sub i1} . GDP binding peptides R6A and KB-752. The R6A peptide and its minimized derivative R6A-1 interact with G{alpha}{sub i1} . GDP. Based on spectroscopic analysis of BODIPYFL-GTP{gamma}S binding to G{alpha}{sub i1}, it has been reported that R6A-1 has guanine nucleotide dissociation inhibitor (GDI) activity against G{alpha}{sub i1} [W.W. Ja, R.W. Roberts, Biochemistry 43 (28) (2004) 9265-9275]. Using radioligand binding, we show that R6A-1 is not a GDI for G{alpha}{sub i1} subunits. Furthermore, we demonstrate that R6A-1 reduces the fluorescence quantum yield of the G{alpha}{sub i1}-BODIPYFL-GTP{gamma}S complex, thus explaining the previously reported GDI activity as a fluorescence artifact. We further show that R6A-1 has significant sequence similarity to the guanine nucleotide exchange factor peptide KB-752 that binds to switch II of G{alpha}{sub i1}. We use competitive binding analysis to show that R6A-1 also binds to switch II of G{alpha} subunits.

  1. Varying potential silicon carbide gas sensor

    NASA Technical Reports Server (NTRS)

    Shields, Virgil B. (Inventor); Ryan, Margaret A. (Inventor); Williams, Roger M. (Inventor)

    1997-01-01

    A hydrocarbon gas detection device operates by dissociating or electro-chemically oxidizing hydrocarbons adsorbed to a silicon carbide detection layer. Dissociation or oxidation are driven by a varying potential applied to the detection layer. Different hydrocarbon species undergo reaction at different applied potentials so that the device is able to discriminate among various hydrocarbon species. The device can operate at temperatures between 100.degree. C. and at least 650.degree. C., allowing hydrocarbon detection in hot exhaust gases. The dissociation reaction is detected either as a change in a capacitor or, preferably, as a change of current flow through an FET which incorporates the silicon carbide detection layers. The silicon carbide detection layer can be augmented with a pad of catalytic material which provides a signal without an applied potential. Comparisons between the catalytically produced signal and the varying potential produced signal may further help identify the hydrocarbon present.

  2. The Thermal Collector With Varied Glass Covers

    SciTech Connect

    Luminosu, I.; Pop, N.

    2010-08-04

    The thermal collector with varied glass covers represents an innovation realized in order to build a collector able to reach the desired temperature by collecting the solar radiation from the smallest surface, with the highest efficiency. In the case of the thermal collector with variable cover glasses, the number of the glass plates covering the absorber increases together with the length of the circulation pipe for the working fluid. The thermal collector with varied glass covers compared to the conventional collector better meet user requirements because: for the same temperature increase, has the collecting area smaller; for the same collection area, realizes the highest temperature increase and has the highest efficiency. This works is addressed to researchers in the solar energy and to engineers responsible with air-conditioning systems design or industrial and agricultural products drying.

  3. The Thermal Collector With Varied Glass Covers

    NASA Astrophysics Data System (ADS)

    Luminosu, I.; Pop, N.

    2010-08-01

    The thermal collector with varied glass covers represents an innovation realized in order to build a collector able to reach the desired temperature by collecting the solar radiation from the smallest surface, with the highest efficiency. In the case of the thermal collector with variable cover glasses, the number of the glass plates covering the absorber increases together with the length of the circulation pipe for the working fluid. The thermal collector with varied glass covers compared to the conventional collector better meet user requirements because: for the same temperature increase, has the collecting area smaller; for the same collection area, realizes the highest temperature increase and has the highest efficiency. This works is addressed to researchers in the solar energy and to engineers responsible with air-conditioning systems design or industrial and agricultural products drying.

  4. Force Measurements of a varying camber hydrofoil

    NASA Astrophysics Data System (ADS)

    Najdzin, Derek; Bardet, Philippe M.; Leftwich, Megan C.

    2013-11-01

    The swimming motion of cetaceans (dolphins, whales) is capable of producing large amounts of thrust as observed in nature. This project aims to determine the propulsive efficiency of this swimming motion through force and power measurements. A mechanism was constructed to replicate this motion by applying a combination of pitching and heaving motions to a varying camber hydrofoil. A novel force balance allows the measurement of three direction force and moments as the fin oscillates. A range of Reynolds and Strouhal numbers were tested to identify the most efficient conditions. Allowing the camber of the hydrofoil to vary has shown to increase lift generated, while generating similar thrust forces when compared to a constant camber hydrofoil.

  5. Learning Time-Varying Coverage Functions

    PubMed Central

    Du, Nan; Liang, Yingyu; Balcan, Maria-Florina; Song, Le

    2015-01-01

    Coverage functions are an important class of discrete functions that capture the law of diminishing returns arising naturally from applications in social network analysis, machine learning, and algorithmic game theory. In this paper, we propose a new problem of learning time-varying coverage functions, and develop a novel parametrization of these functions using random features. Based on the connection between time-varying coverage functions and counting processes, we also propose an efficient parameter learning algorithm based on likelihood maximization, and provide a sample complexity analysis. We applied our algorithm to the influence function estimation problem in information diffusion in social networks, and show that with few assumptions about the diffusion processes, our algorithm is able to estimate influence significantly more accurately than existing approaches on both synthetic and real world data. PMID:25960624

  6. Holographic dark energy with varying gravitational constant

    NASA Astrophysics Data System (ADS)

    Jamil, Mubasher; Saridakis, Emmanuel N.; Setare, M. R.

    2009-08-01

    We investigate the holographic dark energy scenario with a varying gravitational constant, in flat and non-flat background geometry. We extract the exact differential equations determining the evolution of the dark energy density-parameter, which include G-variation correction terms. Performing a low-redshift expansion of the dark energy equation of state, we provide the involved parameters as functions of the current density parameters, of the holographic dark energy constant and of the G-variation.

  7. Elliptical varied line-space (EVLS) gratings

    NASA Astrophysics Data System (ADS)

    Thomas, Roger J.

    2004-10-01

    Imaging spectroscopy at wavelengths below 2000 Å offers an especially powerful method for studying many extended high-temperature astronomical objects, like the Sun and its outer layers. But the technology to make such measurements is also especially challenging, because of the poor reflectance of all standard materials at these wavelengths, and because the observation must be made from above the absorbing effects of the Earth's atmosphere. To solve these problems, single-reflection stigmatic spectrographs for XUV wavelengths have bee flown on several space missions based on designs with toroidal uniform line-space (TULS) or spherical varied line-space (SVLS) gratings that operate at near normal-incidence. More recently, three solar EUV/UV instruments have been selected that use toroidal varied line-space (TVLS) gratings; these are SUMI and RAISE, both sounding rocket payloads, and NEXUS, a SMEX satellite-mission. The next logical extension to such designs is the use of elliptical surfaces for varied line-space (EVLS) rulings. In fact, EVLS designs are found to provide superior imaging even at very large spectrograph magnifications and beam-speeds, permitting extremely high-quality performance in remarkably compact instrument packages. In some cases, such designs may be optimized even further by using a hyperbolic surface for the feeding telescope. The optical characteristics of two solar EUV spectrometers based on these concepts are described: EUS and EUI, both being developed as possible instruments for ESA's Solar Orbiter mission by consortia led by RAL and by MSSL, respectively.

  8. Spatially varying dispersion to model breakthrough curves.

    PubMed

    Li, Guangquan

    2011-01-01

    Often the water flowing in a karst conduit is a combination of contaminated water entering at a sinkhole and cleaner water released from the limestone matrix. Transport processes in the conduit are controlled by advection, mixing (dilution and dispersion), and retention-release. In this article, a karst transport model considering advection, spatially varying dispersion, and dilution (from matrix seepage) is developed. Two approximate Green's functions are obtained using transformation of variables, respectively, for the initial-value problem and for the boundary-value problem. A numerical example illustrates that mixing associated with strong spatially varying conduit dispersion can cause strong skewness and long tailing in spring breakthrough curves. Comparison of the predicted breakthrough curve against that measured from a dye-tracing experiment between Ames Sink and Indian Spring, Northwest Florida, shows that the conduit dispersivity can be as large as 400 m. Such a large number is believed to imply strong solute interaction between the conduit and the matrix and/or multiple flow paths in a conduit network. It is concluded that Taylor dispersion is not dominant in transport in a karst conduit, and the complicated retention-release process between mobile- and immobile waters may be described by strong spatially varying conduit dispersion. PMID:21143474

  9. Protein synthesis in brine shrimp embryos and rabbit reticulocytes. The effect of Mg2+ on binary (eukaryotic initiation factor 2 X GDP) and ternary (eukaryotic initiation factor 2 X GTP X met-tRNAf) complex formation.

    PubMed

    Mehta, H B; Woodley, C L; Wahba, A J

    1983-03-25

    We have prepared eukaryotic initiation factor 2 (eIF-2) from rabbit reticulocytes and Artemia embryos and studied the effect of Mg2+ on binary (eIF-2 X GDP) and ternary (eIF-2 X GTP X Met-tRNAf) complex formation. Under conditions where Mg2+ inhibits Met-tRNAf binding to reticulocyte eIF-2, ternary complex formation with Artemia eIF-2 is not inhibited. Similarly, the formation of eIF-2 X GDP with Artemia eIF-2 is stimulated by Mg2+, whereas the corresponding reticulocyte binary complex is strongly inhibited. In the presence of 1 mM Mg2+, the isolated Artemia eIF-2 X GDP complex is stable in the absence of any added nucleotide, but readily exchanges bound GDP for free GTP. However, the reticulocyte eIF-2 X GDP complex is significantly more stable in the presence of GTP, and nucleotide exchange is dependent upon the addition of a factor isolated from either the postribosomal supernatant or the high salt wash of rabbit reticulocyte ribosomes. This factor also stimulates Met-tRNAf binding to both Artemia and reticulocyte eIF-2. PMID:6550599

  10. A time-varying magnetic flux concentrator

    NASA Astrophysics Data System (ADS)

    Kibret, B.; Premaratne, M.; Lewis, P. M.; Thomson, R.; Fitzgerald, P. B.

    2016-08-01

    It is known that diverse technological applications require the use of focused magnetic fields. This has driven the quest for controlling the magnetic field. Recently, the principles in transformation optics and metamaterials have allowed the realization of practical static magnetic flux concentrators. Extending such progress, here, we propose a time-varying magnetic flux concentrator cylindrical shell that uses electric conductors and ferromagnetic materials to guide magnetic flux to its center. Its performance is discussed based on finite-element simulation results. Our proposed design has potential applications in magnetic sensors, medical devices, wireless power transfer, and near-field wireless communications.

  11. Linear Parameter Varying Control for Actuator Failure

    NASA Technical Reports Server (NTRS)

    Shin, Jong-Yeob; Wu, N. Eva; Belcastro, Christine; Bushnell, Dennis M. (Technical Monitor)

    2002-01-01

    A robust linear parameter varying (LPV) control synthesis is carried out for an HiMAT vehicle subject to loss of control effectiveness. The scheduling parameter is selected to be a function of the estimates of the control effectiveness factors. The estimates are provided on-line by a two-stage Kalman estimator. The inherent conservatism of the LPV design is reducing through the use of a scaling factor on the uncertainty block that represents the estimation errors of the effectiveness factors. Simulations of the controlled system with the on-line estimator show that a superior fault-tolerance can be achieved.

  12. Controlling Contagion Processes in Time Varying Networks

    NASA Astrophysics Data System (ADS)

    Liu, Suyu; Perra, Nicola; Karsai, Marton; Vespignani, Alessandro

    2013-03-01

    The vast majority of strategies aimed at controlling contagion and spreading processes on networks consider the connectivity pattern of the system as quenched. In this paper, we consider the class of activity driven networks to analytically evaluate how different control strategies perform in time-varying networks. We consider the limit in which the evolution of the structure of the network and the spreading process are simultaneous yet independent. We analyze three control strategies based on node's activity patterns to decide the removal/immunization of nodes. We find that targeted strategies aimed at the removal of active nodes outperform by orders of magnitude the widely used random strategies. In time-varying networks however any finite time observation of the network dynamics provides only incomplete information on the nodes' activity and does not allow the precise ranking of the most active nodes as needed to implement targeted strategies. Here we develop a control strategy that focuses on targeting the egocentric time-aggregated network of a small control group of nodes.The presented strategy allows the control of spreading processes by removing a fraction of nodes much smaller than the random strategy while at the same time limiting the observation time on the system.

  13. Transient, spatially varied groundwater recharge modeling

    NASA Astrophysics Data System (ADS)

    Assefa, Kibreab Amare; Woodbury, Allan D.

    2013-08-01

    The objective of this work is to integrate field data and modeling tools in producing temporally and spatially varying groundwater recharge in a pilot watershed in North Okanagan, Canada. The recharge modeling is undertaken by using the Richards equation based finite element code (HYDRUS-1D), ArcGIS™, ROSETTA, in situ observations of soil temperature and soil moisture, and a long-term gridded climate data. The public version of HYDUS-1D and another version with detailed freezing and thawing module are first used to simulate soil temperature, snow pack, and soil moisture over a one year experimental period. Statistical analysis of the results show both versions of HYDRUS-1D reproduce observed variables to the same degree. After evaluating model performance using field data and ROSETTA derived soil hydraulic parameters, the HYDRUS-1D code is coupled with ArcGIS™ to produce spatially and temporally varying recharge maps throughout the Deep Creek watershed. Temporal and spatial analysis of 25 years daily recharge results at various representative points across the study watershed reveal significant temporal and spatial variations; average recharge estimated at 77.8 ± 50.8 mm/year. Previous studies in the Okanagan Basin used Hydrologic Evaluation of Landfill Performance without any attempt of model performance evaluation, notwithstanding its inherent limitations. Thus, climate change impact results from this previous study and similar others, such as Jyrkama and Sykes (2007), need to be interpreted with caution.

  14. Varying execution discipline to increase performance

    SciTech Connect

    Campbell, P.L.; Maccabe, A.B.

    1993-12-22

    This research investigates the relationship between execution discipline and performance. The hypothesis has two parts: 1. Different execution disciplines exhibit different performance for different computations, and 2. These differences can be effectively predicted by heuristics. A machine model is developed that can vary its execution discipline. That is, the model can execute a given program using either the control-driven, data-driven or demand-driven execution discipline. This model is referred to as a ``variable-execution-discipline`` machine. The instruction set for the model is the Program Dependence Web (PDW). The first part of the hypothesis will be tested by simulating the execution of the machine model on a suite of computations, based on the Livermore Fortran Kernel (LFK) Test (a.k.a. the Livermore Loops), using all three execution disciplines. Heuristics are developed to predict relative performance. These heuristics predict (a) the execution time under each discipline for one iteration of each loop and (b) the number of iterations taken by that loop; then the heuristics use those predictions to develop a prediction for the execution of the entire loop. Similar calculations are performed for branch statements. The second part of the hypothesis will be tested by comparing the results of the simulated execution with the predictions produced by the heuristics. If the hypothesis is supported, then the door is open for the development of machines that can vary execution discipline to increase performance.

  15. Isolation and analysis of a novel gene, HXC-26, adjacent to the rab GDP dissociation inhibitor gene located at human chromosome Xq28 region.

    PubMed

    Toyoda, A; Sakai, T; Sugiyama, Y; Kusuda, J; Hashimoto, K; Maeda, H

    1996-10-31

    We screened potential promoter regions from NotI-linking cosmid clones mapped on human chromosome Xq28 region with our constructed trapping vector and isolated six fragments containing transcription activity. Using one of the obtained fragments as a probe, a novel gene was isolated by screening a human skeletal muscle cDNA library. The isolated cDNA, termed HXC-26, contained an open reading frame of 975 nucleotides encoding 325 amino acids (38,848 Da). The HXC-26 gene was composed of 13 exons that span approximately 8 kb. Several potential GC boxes were found in the putative promoter region, but no typical TATA box. The HXC-26 gene associated with a CpG island was located adjacent to the rab GDP dissociation inhibitor (GDI) gene. PMID:9039504

  16. Varied Clinical Manifestations of Amebic Colitis.

    PubMed

    Cooper, Chad J; Fleming, Rhonda; Boman, Darius A; Zuckerman, Marc J

    2015-11-01

    Invasive amebiasis is common worldwide, but infrequently observed in the United States. It is associated with considerable morbidity in patients residing in or traveling to endemic areas. We review the clinical and endoscopic manifestations of amebic colitis to alert physicians to the varied clinical manifestations of this potentially life-threatening disease. Copyright ©Most patients present with watery or bloody diarrhea. Less common presentations of amebic colitis include abdominal pain, overt gastrointestinal bleeding, exacerbation of inflammatory bowel disease, or the incidental association with colon cancer. Amebic liver abscesses are the most frequent complication. Rectosigmoid involvement may be found on colonoscopy; however, most case series have reported that the cecum is the most commonly involved site, followed by the ascending colon. Endoscopic evaluation should be used to assist in the diagnosis, with attention to the observation of colonic inflammation, ulceration, and amebic trophozoites on histopathological examination. PMID:26539949

  17. Optical vortex array in spatially varying lattice

    NASA Astrophysics Data System (ADS)

    Kapoor, Amit; Kumar, Manish; Senthilkumaran, P.; Joseph, Joby

    2016-04-01

    We present an experimental method based on a modified multiple beam interference approach to generate an optical vortex array arranged in a spatially varying lattice. This method involves two steps which are: numerical synthesis of a consistent phase mask by using two-dimensional integrated phase gradient calculations and experimental implementation of produced phase mask by utilizing a phase only spatial light modulator in an optical 4f Fourier filtering setup. This method enables an independent variation of the orientation and period of the vortex lattice. As working examples, we provide the experimental demonstration of various spatially variant optical vortex lattices. We further confirm the existence of optical vortices by formation of fork fringes. Such lattices may find applications in size dependent trapping, sorting, manipulation and photonic crystals.

  18. Climate dynamics: Why does climate vary?

    NASA Astrophysics Data System (ADS)

    Schultz, Colin

    2011-08-01

    In recent years, climate change has become a major focus of public and political discussion. Ongoing scientific inquiry, revolving predominantly around understanding the anthropogenic effects of rising greenhouse gas levels, coupled with how successfully findings are communicated to the public, has made climate science both contentious and exigent. In the AGU monograph Climate Dynamics: Why Does Climate Vary?, editors De-Zheng Sun and Frank Bryan reinforce the importance of investigating the complex dynamics that underlie the natural variability of the climate system. Understanding this complexity—particularly how the natural variability of climate may enhance or mask anthropogenic warming—could have important consequences for the future. In this interview, Eos talks to De-Zheng Sun.

  19. Fractional diffusions with time-varying coefficients

    NASA Astrophysics Data System (ADS)

    Garra, Roberto; Orsingher, Enzo; Polito, Federico

    2015-09-01

    This paper is concerned with the fractionalized diffusion equations governing the law of the fractional Brownian motion BH(t). We obtain solutions of these equations which are probability laws extending that of BH(t). Our analysis is based on McBride fractional operators generalizing the hyper-Bessel operators L and converting their fractional power Lα into Erdélyi-Kober fractional integrals. We study also probabilistic properties of the random variables whose distributions satisfy space-time fractional equations involving Caputo and Riesz fractional derivatives. Some results emerging from the analysis of fractional equations with time-varying coefficients have the form of distributions of time-changed random variables.

  20. Experiences from a Varied Career in Physics

    NASA Astrophysics Data System (ADS)

    Frame, Katherine

    2006-04-01

    I received my doctorate in Experimental High Energy Physics from Michigan State Univeristy. My thesis was based on my work with QCD jet physics at the D0 collider experiment at Fermi National Laboratory. My first postdoctoral position was with Oxford University working on solar neutrino oscillations at the Sudbury Neutrino Observatory (SNO). Following this, I joined what is now the Nuclear Nonproliferation Safeguards, Science and Technology group (N-1) at Los Alamos National Laboratory. Over this time, I've worked on a wide range of physics topics in a wide range of physical and social environments. I would like to share some of the experiences I've had working in such varied environment and the thoughts that have guided me on my path that eventually led me from basic research to a more applied field.

  1. Varying ghost dark energy and particle creation

    NASA Astrophysics Data System (ADS)

    Khurshudyan, M.

    2016-02-01

    One of the models of dark energy is the ghost dark energy, which has a geometrical origin. Recently, a certain type of phenomenological modification of ghost dark energy has been suggested which motivated us for this work. The goal of this paper is twofold. First, we would like to study the cosmological scenario involving interacting varying ghost dark energy. A cosmographic analysis of a non-interacting model is also performed. Then, we study the particle creation following the straight analogy between quantization in Minkowski background and canonical quantization of a scalar field in curved dynamical backgrounds. Particular attention will be paid to massless-particle production from a radiation-dominated universe (according to our toy model) which evolves to our large-scale universe. Constraints on the parameters of the models obtained during the cosmographic analysis did allow to demonstrate the possibility of a massless-particle creation in a radiation-dominated universe.

  2. Random walk with an exponentially varying step

    NASA Astrophysics Data System (ADS)

    de La Torre, A. C.; Maltz, A.; Mártin, H. O.; Catuogno, P.; García-Mata, I.

    2000-12-01

    A random walk with exponentially varying step, modeling damped or amplified diffusion, is studied. Each step is equal to the previous one multiplied by a step factor s (01/s relating different processes. For s<1/2 and s>2, the process is retrodictive (i.e., every final position can be reached by a unique path) and the set of all possible final points after infinite steps is fractal. For step factors in the interval [1/2,2], some cases result in smooth density distributions, other cases present overlapping self-similarity and there are values of the step factor for which the distribution is singular without a density function.

  3. Motion Editing for Time-Varying Mesh

    NASA Astrophysics Data System (ADS)

    Xu, Jianfeng; Yamasaki, Toshihiko; Aizawa, Kiyoharu

    2008-12-01

    Recently, time-varying mesh (TVM), which is composed of a sequence of mesh models, has received considerable interest due to its new and attractive functions such as free viewpoint and interactivity. TVM captures the dynamic scene of the real world from multiple synchronized cameras. However, it is expensive and time consuming to generate a TVM sequence. In this paper, an editing system is presented to reuse the original data, which reorganizes the motions to obtain a new sequence based on the user requirements. Hierarchical motion structure is observed and parsed in TVM sequences. Then, the representative motions are chosen into a motion database, where a motion graph is constructed to connect those motions with smooth transitions. After the user selects some desired motions from the motion database, the best paths are searched by a modified Dijkstra algorithm to achieve a new sequence. Our experimental results demonstrate that the edited sequences are natural and smooth.

  4. Time varying arctic climate change amplification

    SciTech Connect

    Chylek, Petr; Dubey, Manvendra K; Lesins, Glen; Wang, Muyin

    2009-01-01

    During the past 130 years the global mean surface air temperature has risen by about 0.75 K. Due to feedbacks -- including the snow/ice albedo feedback -- the warming in the Arctic is expected to proceed at a faster rate than the global average. Climate model simulations suggest that this Arctic amplification produces warming that is two to three times larger than the global mean. Understanding the Arctic amplification is essential for projections of future Arctic climate including sea ice extent and melting of the Greenland ice sheet. We use the temperature records from the Arctic stations to show that (a) the Arctic amplification is larger at latitudes above 700 N compared to those within 64-70oN belt, and that, surprisingly; (b) the ratio of the Arctic to global rate of temperature change is not constant but varies on the decadal timescale. This time dependence will affect future projections of climate changes in the Arctic.

  5. Time varying, multivariate volume data reduction

    SciTech Connect

    Ahrens, James P; Fout, Nathaniel; Ma, Kwan - Liu

    2010-01-01

    Large-scale supercomputing is revolutionizing the way science is conducted. A growing challenge, however, is understanding the massive quantities of data produced by large-scale simulations. The data, typically time-varying, multivariate, and volumetric, can occupy from hundreds of gigabytes to several terabytes of storage space. Transferring and processing volume data of such sizes is prohibitively expensive and resource intensive. Although it may not be possible to entirely alleviate these problems, data compression should be considered as part of a viable solution, especially when the primary means of data analysis is volume rendering. In this paper we present our study of multivariate compression, which exploits correlations among related variables, for volume rendering. Two configurations for multidimensional compression based on vector quantization are examined. We emphasize quality reconstruction and interactive rendering, which leads us to a solution using graphics hardware to perform on-the-fly decompression during rendering. In this paper we present a solution which addresses the need for data reduction in large supercomputing environments where data resulting from simulations occupies tremendous amounts of storage. Our solution employs a lossy encoding scheme to acrueve data reduction with several options in terms of rate-distortion behavior. We focus on encoding of multiple variables together, with optional compression in space and time. The compressed volumes can be rendered directly with commodity graphics cards at interactive frame rates and rendering quality similar to that of static volume renderers. Compression results using a multivariate time-varying data set indicate that encoding multiple variables results in acceptable performance in the case of spatial and temporal encoding as compared to independent compression of variables. The relative performance of spatial vs. temporal compression is data dependent, although temporal compression has the

  6. Fundamental Investigation of Circumferentially Varying Stator Cascades

    NASA Astrophysics Data System (ADS)

    Farnsworth, John A. N.

    2011-12-01

    The fundamentals of circumferentially varying stator cascades and their interactions with a downstream fixed pitch propeller were investigated experimentally utilizing multiple measurement techniques. The flow physics associated with the isolated circumferentially varying, or cyclic, stator cascade was studied in a wind tunnel environment through string tuft flow visualization, 2-D PIV, Stereoscopic PIV, and static surface pressure measurements. The coupled wake physics of the cyclic stator cascade with propeller were then investigated in a water tunnel using Stereo PIV. Finally, the global performance of components and the coupled system were quantified through force and moment measurements on the model in the water tunnel. A cyclic distribution of the stators' deflections resulted in non-axisymmetric distributions of the surface pressure and the flow field downstream of the stator array. In the model near wake the flow field is associated with secondary flow patterns in the form of coherent streamwise vortical structures that can be described by potential flow mechanisms. The collective pitch distribution of the stators produces a flow field that resembles a potential Rankine vortex, whereas the cyclic pitch distribution generates a flow pattern that can be described by a potential vortex pair in a cross flow. The stator distribution alone produces a significant side force that increases linearly with stator pitch amplitude. When a propeller is incorporated downstream from the cyclic cascade the side force from the stator cascade is reduced, but a small vertical force and pitching moment are created. The generation of these secondary forces and moments can be related to the redistribution of the tangential flow from the cyclic cascade into the axial direction by the retreating and advancing blade states of the fixed pitch propeller.

  7. Does the Newtonian Gravity "Constant" G Vary?

    NASA Astrophysics Data System (ADS)

    Noerdlinger, Peter D.

    2015-08-01

    A series of measurements of Newton's gravity constant, G, dating back as far as 1893, yielded widely varying values, the variation greatly exceeding the stated error estimates (Gillies, 1997; Quinn, 2000, Mohr et al 2008). The value of G is usually said to be unrelated to other physics, but we point out that the 8B Solar Neutrino Rate ought to be very sensitive. Improved pulsar timing could also help settle the issue as to whether G really varies. We claim that the variation in measured values over time (1893-2014 C.E.) is a more serious problem than the failure of the error bars to overlap; it appears that challenging or adjusting the error bars hardly masks the underlying disagreement in central values. We have assessed whether variations in the gravitational potential due to (for example) local dark matter (DM) could explain the variations. We find that the required potential fluctuations could transiently accelerate the Solar System and nearby stars to speeds in excess of the Galactic escape speed. Previous theories for the variation in G generally deal with supposed secular variation on a cosmological timescale, or very rapid oscillations whose envelope changes on that scale (Steinhardt and Will 1995). Therefore, these analyses fail to support variations on the timescale of years or spatial scales of order parsecs, which would be required by the data for G. We note that true variations in G would be associated with variations in clock rates (Derevianko and Pospelov 2014; Loeb and Maoz 2015), which could mask changes in orbital dynamics. Geringer-Sameth et al (2014) studied γ-ray emission from the nearby Reticulum dwarf galaxy, which is expected to be free of "ordinary" (stellar, black hole) γ-ray sources and found evidence for DM decay. Bernabei et al (2003) also found evidence for DM penetrating deep underground at Gran Sasso. If, indeed, variations in G can be tied to variations in gravitational potential, we have a new tool to assess the DM density.

  8. Stratospheric Impact of Varying Sea Surface Temperatures

    NASA Technical Reports Server (NTRS)

    Newman, Paul A.; Nash, Eric R.; Nielsen, Jon E.; Waugh, Darryn; Pawson, Steven

    2004-01-01

    The Finite-Volume General Circulation Model (FVGCM) has been run in 50 year simulations with the: 1) 1949-1999 Hadley Centre sea surface temperatures (SST), and 2) a fixed annual cycle of SSTs. In this presentation we first show that the 1949-1999 FVGCM simulation produces a very credible stratosphere in comparison to an NCEP/NCAR reanalysis climatology. In particular, the northern hemisphere has numerous major and minor stratospheric warming, while the southern hemisphere has only a few over the 50-year simulation. During the northern hemisphere winter, temperatures are both warmer in the lower stratosphere and the polar vortex is weaker than is found in the mid-winter southern hemisphere. Mean temperature differences in the lower stratosphere are shown to be small (less than 2 K), and planetary wave forcing is found to be very consistent with the climatology. We then will show the differences between our varying SST simulation and the fixed SST simulation in both the dynamics and in two parameterized trace gases (ozone and methane). In general, differences are found to be small, with subtle changes in planetary wave forcing that lead to reduced temperatures in the SH and increased temperatures in the NH.

  9. Serotonin release varies with brain tryptophan levels

    NASA Technical Reports Server (NTRS)

    Schaechter, Judith D.; Wurtman, Richard J.

    1990-01-01

    This study examines directly the effects on serotonin release of varying brain tryptophan levels within the physiologic range. It also addresses possible interactions between tryptophan availability and the frequency of membrane depolarization in controlling serotonin release. We demonstrate that reducing tryptophan levels in rat hypothalamic slices (by superfusing them with medium supplemented with 100 microM leucine) decreases tissue serotonin levels as well as both the spontaneous and the electrically-evoked serotonin release. Conversely, elevating tissue tryptophan levels (by superfusing slices with medium supplemented with 2 microM tryptophan) increases both the tissue serotonin levels and the serotonin release. Serotonin release was found to be affected independently by the tryptophan availability and the frequency of electrical field-stimulation (1-5 Hz), since increasing both variables produced nearly additive increases in release. These observations demonstrate for the first time that both precursor-dependent elevations and reductions in brain serotonin levels produce proportionate changes in serotonin release, and that the magnitude of the tryptophan effect is unrelated to neuronal firing frequency. The data support the hypothesis that serotonin release is proportionate to intracellular serotonin levels.

  10. TIME-VARYING DYNAMICAL STAR FORMATION RATE

    SciTech Connect

    Lee, Eve J.; Chang, Philip; Murray, Norman

    2015-02-10

    We present numerical evidence of dynamic star formation in which the accreted stellar mass grows superlinearly with time, roughly as t {sup 2}. We perform simulations of star formation in self-gravitating hydrodynamic and magnetohydrodynamic turbulence that is continuously driven. By turning the self-gravity of the gas in the simulations on or off, we demonstrate that self-gravity is the dominant physical effect setting the mass accretion rate at early times before feedback effects take over, contrary to theories of turbulence-regulated star formation. We find that gravitational collapse steepens the density profile around stars, generating the power-law tail on what is otherwise a lognormal density probability distribution function. Furthermore, we find turbulent velocity profiles to flatten inside collapsing regions, altering the size-line width relation. This local flattening reflects enhancements of turbulent velocity on small scales, as verified by changes to the velocity power spectra. Our results indicate that gas self-gravity dynamically alters both density and velocity structures in clouds, giving rise to a time-varying star formation rate. We find that a substantial fraction of the gas that forms stars arrives via low-density flows, as opposed to accreting through high-density filaments.

  11. Microsatellites in varied arenas of research

    PubMed Central

    Remya, K. S.; Joseph, Sigimol; Lakshmi, P. K.; Akhila, S.

    2010-01-01

    Microsatellites known as simple-sequence repeats (SSRs) or short-tandem repeats (STRs), represent specific sequences of DNA consisting of tandemly repeated units of one to six nucleotides. The repetitive nature of microsatellites makes them particularly prone to grow or shrink in length and these changes can have both good and bad consequences for the organisms that possess them. They are responsible for various neurological diseases and hence the same cause is now utilized for the early detection of various diseases, such as, Schizophrenia and Bipolar Disorder, Congenital generalized Hypertrichosis, Asthma, and Bronchial Hyperresponsiveness. These agents are widely used for forensic identification and relatedness testing, and are predominant genetic markers in this area of application. The application of microsatellites is an extending web and covers the varied scenarios of science, such as, conservation biology, plant genetics, and population studies. At present, researches are progressing round the globe to extend the use of these genetic repeaters to unmask the hidden genetic secrets behind the creation of the world. PMID:21814449

  12. Device for varying engine valve timing

    SciTech Connect

    Hampton, K.

    1988-07-05

    A device is described for angularly displacing a camshaft relative to the crankshaft of an IC engine to vary the engine valve timing, comprising; a hub member; means to attach the hub member to the engine crankshaft; a drive member rotatably mounted on the hub member, and means connecting the drive member in driving relationship with the engine crankshaft; an advancing member; a first means interconnecting the advancing member with the hub member affecting limited axial movement of the advancing member relative to the hub member; a second means interconnecting the advancing member with the drive member which upon axial movement of the advancing member causes limited rotation of the drive member relative to the hub member; an annular means mounted on the hub member, the advancing member mounted on the annular means; coacting meshing means formed in part on the annular means for moving the advancing member axially relative to the hub upon limited rotation of the annular means relative to the hub; and a non-rotational retarder means which when actuated applies a retarding torque to the annular means causing limited rotation of the annular means relative to the hub and thus cause the advancing member to move axially of the hub whereby the drive member is moved a limited angular distance relative to the hub member.

  13. Vector curvaton with varying kinetic function

    SciTech Connect

    Dimopoulos, Konstantinos; Karciauskas, Mindaugas; Wagstaff, Jacques M.

    2010-01-15

    A new model realization of the vector curvaton paradigm is presented and analyzed. The model consists of a single massive Abelian vector field, with a Maxwell-type kinetic term. By assuming that the kinetic function and the mass of the vector field are appropriately varying during inflation, it is shown that a scale-invariant spectrum of superhorizon perturbations can be generated. These perturbations can contribute to the curvature perturbation of the Universe. If the vector field remains light at the end of inflation it is found that it can generate substantial statistical anisotropy in the spectrum and bispectrum of the curvature perturbation. In this case the non-Gaussianity in the curvature perturbation is predominantly anisotropic, which will be a testable prediction in the near future. If, on the other hand, the vector field is heavy at the end of inflation then it is demonstrated that particle production is approximately isotropic and the vector field alone can give rise to the curvature perturbation, without directly involving any fundamental scalar field. The parameter space for both possibilities is shown to be substantial. Finally, toy models are presented which show that the desired variation of the mass and kinetic function of the vector field can be realistically obtained, without unnatural tunings, in the context of supergravity or superstrings.

  14. Enhancement of fluoroscopic images with varying contrast.

    PubMed

    Ozanian, T O; Phillips, R

    2001-04-01

    A heuristic algorithm for enhancement of fluoroscopic images of varying contrast is proposed. The new technique aims at identifying a suitable type of enhancement for different locations in an image. The estimation relies on simple preliminary classification of image parts into one of the following types: uniform, sharp (with sufficient contrast), detail-containing (structure present) and unknown (for the cases where it is difficult to make a decision). Different smoothing techniques are applied locally in the different types of image parts. For those parts that are classified as detail-containing, probable object boundaries are identified and local sharpening is carried out to increase the contrast at these places. The adopted approach attempts to improve the quality of an image by reducing available noise and simultaneously increasing the contrast at probable object boundaries without increasing the overall dynamic range. In addition, it allows noise to be cleaned, that at some locations is stronger than the fine structure at other locations, whilst preserving the details. PMID:11223147

  15. Audibility of time-varying signals in time-varying backgrounds: Model and data

    NASA Astrophysics Data System (ADS)

    Moore, Brian C. J.; Glasberg, Brian R.

    2001-05-01

    We have described a model for calculating the partial loudness of a steady signal in the presence of a steady background sound [Moore et al., J. Audio Eng. Soc. 45, 224-240 (1997)]. We have also described a model for calculating the loudness of time-varying signals [B. R. Glasberg and B. C. J. Moore, J. Audio Eng. Soc. 50, 331-342 (2002)]. These two models have been combined to allow calculation of the partial loudness of a time-varying signal in the presence of a time-varying background. To evaluate the model, psychometric functions for the detection of a variety of time-varying signals (e.g., telephone ring tones) have been measured in a variety of background sounds sampled from everyday listening situations, using a two-alternative forced-choice task. The different signals and backgrounds were interleaved, to create stimulus uncertainty, as would occur in everyday life. The data are used to relate the detectability index, d', to the calculated partial loudness. In this way, the model can be used to predict the detectability of any signal, based on its calculated partial loudness. [Work supported by MRC (UK) and by Nokia.

  16. How specific halide adsorption varies hydrophobic interactions.

    PubMed

    Stock, Philipp; Müller, Melanie; Utzig, Thomas; Valtiner, Markus

    2016-03-01

    Hydrophobic interactions (HI) are driven by the water structure around hydrophobes in aqueous electrolytes. How water structures at hydrophobic interfaces and how this influences the HI was subject to numerous studies. However, the effect of specific ion adsorption on HI and hydrophobic interfaces remains largely unexplored or controversial. Here, the authors utilized atomic force microscopy force spectroscopy at well-defined nanoscopic hydrophobic interfaces to experimentally address how specific ion adsorption of halide ions as well as NH4 (+), Cs(+), and Na(+) cations alters interaction forces across hydrophobic interfaces. Our data demonstrate that iodide adsorption at hydrophobic interfaces profoundly varies the hydrophobic interaction potential. A long-range and strong hydration repulsion at distances D > 3 nm, is followed by an instability which could be explained by a subsequent rapid ejection of adsorbed iodides from approaching hydrophobic interfaces. In addition, the authors find only a weakly pronounced influence of bromide, and as expected no influence of chloride. Also, all tested cations do not have any significant influence on HI. Complementary, x-ray photoelectron spectroscopy and quartz-crystal-microbalance with dissipation monitoring showed a clear adsorption of large halide ions (Br(-)/I(-)) onto hydrophobic self-assembled monolayers (SAMs). Interestingly, iodide can even lead to a full disintegration of SAMs due to specific and strong interactions of iodide with gold. Our data suggest that hydrophobic surfaces are not intrinsically charged negatively by hydroxide adsorption, as it was generally believed. Hydrophobic surfaces rather interact strongly with negatively charged large halide ions, leading to a surface charging and significant variation of interaction forces. PMID:26753786

  17. Saccadic adaptation to a systematically varying disturbance.

    PubMed

    Cassanello, Carlos R; Ohl, Sven; Rolfs, Martin

    2016-08-01

    Saccadic adaptation maintains the correct mapping between eye movements and their targets, yet the dynamics of saccadic gain changes in the presence of systematically varying disturbances has not been extensively studied. Here we assessed changes in the gain of saccade amplitudes induced by continuous and periodic postsaccadic visual feedback. Observers made saccades following a sequence of target steps either along the horizontal meridian (Two-way adaptation) or with unconstrained saccade directions (Global adaptation). An intrasaccadic step-following a sinusoidal variation as a function of the trial number (with 3 different frequencies tested in separate blocks)-consistently displaced the target along its vector. The oculomotor system responded to the resulting feedback error by modifying saccade amplitudes in a periodic fashion with similar frequency of variation but lagging the disturbance by a few tens of trials. This periodic response was superimposed on a drift toward stronger hypometria with similar asymptotes and decay rates across stimulus conditions. The magnitude of the periodic response decreased with increasing frequency and was smaller and more delayed for Global than Two-way adaptation. These results suggest that-in addition to the well-characterized return-to-baseline response observed in protocols using constant visual feedback-the oculomotor system attempts to minimize the feedback error by integrating its variation across trials. This process resembles a convolution with an internal response function, whose structure would be determined by coefficients of the learning model. Our protocol reveals this fast learning process in single short experimental sessions, qualifying it for the study of sensorimotor learning in health and disease. PMID:27098027

  18. Time varied gain functions for pulsed sonars

    NASA Astrophysics Data System (ADS)

    MacLennan, D. N.

    1986-11-01

    The time varied gain (TVG) of a sonar is intended to remove the range dependence of echo strength. The conventional "40 log R" and "20 log R" TVG functions, which apply to single and distributed targets respectively, provide exact compensation only at infinite range. At short range, the conventional functions are inexact due to bandwidth related delays and the change in receiver gain over a pulse length. The theory of echo formation is used to derive exact gain functions which make the echo energy integral independent of the target range. In the case of randomly distributed targets, the linear form of the exact function is shown to be ( t)= ct exp (α ct/2)√{(1- T 1/t ) 2-( T 2/t ) 2}, for sound speed c and absorption coefficient α. T1 and T2 are constants for a given sonar and target. The ct exp ( αct/2) term is equivalent to "20 log R+2 αR". The single target function is similarly the conventional function multiplied by a polynomial expression in 1/ t. Analytic functions are derived for systems with simple transfer functions. As the pulse length bandwidth product increases, the exact function tends to that of the wideband ideal system for which T1= T/2 and T2 = T/√(12), T being the transmitter pulse length. Exact TVG functions are derived numerically for two echo sounders used in fishery research and are compared with the measured gain variation. The TVG function realized in sonars may depart considerably from the exact form. Delaying the start of the TVG ramp may reduce the error. The delay required for exact compensation depends upon the target range and is at least half the pulse length.

  19. Cancer survival rates and GDP expenditure on health: a comparison of England and Wales and the USA, Denmark, Netherlands, Finland, France, Germany, Italy, Spain and Switzerland in the 1990s.

    PubMed

    Evans, B T; Pritchard, C

    2000-09-01

    Health funding is central to public health planning and clinical practice, hence this comparison of GDP health expenditure and five year post-diagnostic cancer survival rates of England and Wales with the USA and eight European countries. The three lowest proportional GDP health expenditures over the period 1980-1990 were Denmark, England and Wales, and Spain. The USA had the highest proportional GDP expenditure, followed by France, Germany, and The Netherlands. Overall the USA had the best cancer survival rates in the 14 sites reviewed, followed by Switzerland, The Netherlands, and Germany. The least successful were Spain, England and Wales, and Italy. In respect to the high incidence cancers, colorectal, lung, and female breast cancers, England and Wales survival rates were the poorest of all ten countries, followed by Denmark and Spain. Higher GDP health expenditure and longer survival rates for each gender were significantly correlated indicating a possible association between fiscal input and clinical outcomes, which poses problems for the development of effective public health. PMID:11035452

  20. Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.

    PubMed

    Qin, Hua; Deng, Zaian; Zhang, Chuanyu; Wang, Yayun; Wang, Juan; Liu, Hai; Zhang, Zhili; Huang, Rongfeng; Zhang, Zhijin

    2016-02-01

    GDP-D-mannose pyrophosphorylase (GMPase) catalyzes the synthesis of GDP-D-mannose, which is a precursor for ascorbic acid (AsA) synthesis in plants. The rice genome encodes three GMPase homologs OsVTC1-1, OsVTC1-3 and OsVTC1-8, but their roles in AsA synthesis are unclear. The overexpression of OsVTC1-1 or OsVTC1-3 restored the AsA synthesis of vtc1-1 in Arabidopsis, while that of OsVTC1-8 did not, indicating that only OsVTC1-1 and OsVTC1-3 are involved in AsA synthesis in rice. Similar to Arabidopsis VTC1, the expression of OsVTC1-1 was high in leaves, induced by light, and inhibited by dark. Unlike OsVTC1-1, the expression level of OsVTC1-3 was high in roots and quickly induced by the dark, while the transcription level of OsVTC1-8 did not show obvious changes under constant light or dark treatments. In OsVTC1-1 RNAi plants, the AsA content of rice leaves decreased, and the AsA production induced by light was limited. In contrast, OsVTC1-3 RNAi lines altered AsA synthesis levels in rice roots, but not in the leaves or under the light/dark treatment. The enzyme activity showed that OsVTC1-1 and OsVTC1-3 had higher GMPase activities than OsVTC1-8 in vitro. Our data showed that, unlike in Arabidopsis, the rice GPMase homologous proteins illustrated a new model in AsA synthesis: OsVTC1-1 may be involved in the AsA synthesis, which takes place in leaves, while OsVTC1-3 may be responsible for AsA synthesis in roots. The different roles of rice GMPase homologous proteins in AsA synthesis may be due to their differences in transcript levels and enzyme activities. PMID:26715595

  1. GDP-Mannose-4,6-Dehydratase Is a Cytosolic Partner of Tankyrase 1 That Inhibits Its Poly(ADP-Ribose) Polymerase Activity

    PubMed Central

    Bisht, Kamlesh K.; Dudognon, Charles; Chang, William G.; Sokol, Ethan S.; Ramirez, Alejandro

    2012-01-01

    Tankyrase 1 is a poly(ADP-ribose) polymerase (PARP) that participates in a broad range of cellular activities due to interaction with multiple binding partners. Tankyrase 1 recognizes a linear six-amino-acid degenerate motif and, hence, has hundreds of potential target proteins. Binding of partner proteins to tankyrase 1 usually results in their poly(ADP-ribosyl)ation (PARsylation) and can lead to ubiquitylation and proteasomal degradation. However, it is not known how tankyrase 1 PARP activity is regulated. Here we identify GDP-mannose 4,6-dehydratase (GMD) as a binding partner of tankyrase 1. GMD is a cytosolic protein required for the first step of fucose synthesis. We show that GMD is complexed to tankyrase 1 in the cytosol throughout interphase, but its association with tankyrase 1 is reduced upon entry into mitosis, when tankyrase 1 binds to its other partners TRF1 (at telomeres) and NuMA (at spindle poles). In contrast to other binding partners, GMD is not PARsylated by tankyrase 1. Indeed, we show that GMD inhibits tankyrase 1 PARP activity in vitro, dependent on the GMD tankyrase 1 binding motif. In vivo, depletion of GMD led to degradation of tankyrase 1, dependent on the catalytic PARP activity of tankyrase 1. We speculate that association of tankyrase 1 with GMD in the cytosol sequesters tankyrase 1 in an inactive stable form that can be tapped by other target proteins as needed. PMID:22645305

  2. Genome mining of the sordarin biosynthetic gene cluster from Sordaria araneosa Cain ATCC 36386: characterization of cycloaraneosene synthase and GDP-6-deoxyaltrose transferase.

    PubMed

    Kudo, Fumitaka; Matsuura, Yasunori; Hayashi, Takaaki; Fukushima, Masayuki; Eguchi, Tadashi

    2016-07-01

    Sordarin is a glycoside antibiotic with a unique tetracyclic diterpene aglycone structure called sordaricin. To understand its intriguing biosynthetic pathway that may include a Diels-Alder-type [4+2]cycloaddition, genome mining of the gene cluster from the draft genome sequence of the producer strain, Sordaria araneosa Cain ATCC 36386, was carried out. A contiguous 67 kb gene cluster consisting of 20 open reading frames encoding a putative diterpene cyclase, a glycosyltransferase, a type I polyketide synthase, and six cytochrome P450 monooxygenases were identified. In vitro enzymatic analysis of the putative diterpene cyclase SdnA showed that it catalyzes the transformation of geranylgeranyl diphosphate to cycloaraneosene, a known biosynthetic intermediate of sordarin. Furthermore, a putative glycosyltransferase SdnJ was found to catalyze the glycosylation of sordaricin in the presence of GDP-6-deoxy-d-altrose to give 4'-O-demethylsordarin. These results suggest that the identified sdn gene cluster is responsible for the biosynthesis of sordarin. Based on the isolated potential biosynthetic intermediates and bioinformatics analysis, a plausible biosynthetic pathway for sordarin is proposed. PMID:27072286

  3. MERTK signaling in the retinal pigment epithelium regulates the tyrosine phosphorylation of GDP dissociation inhibitor alpha from the GDI/CHM family of RAB GTPase effectors.

    PubMed

    Shelby, Shameka J; Feathers, Kecia L; Ganios, Anna M; Jia, Lin; Miller, Jason M; Thompson, Debra A

    2015-11-01

    Photoreceptor outer segments (OS) in the vertebrate retina undergo a process of continual renewal involving shedding of disc membranes that are cleared by phagocytic uptake into the retinal pigment epithelium (RPE). In dystrophic Royal College of Surgeons (RCS) rats, OS phagocytosis is blocked by a mutation in the gene encoding the receptor tyrosine kinase MERTK. To identify proteins tyrosine-phosphorylated downstream of MERTK in the RPE, MALDI-mass spectrometry with peptide-mass fingerprinting was used in comparative studies of RCS congenic and dystrophic rats. At times corresponding to peak phagocytic activity, the RAB GTPase effector GDP dissociation inhibitor alpha (GDI1) was found to undergo tyrosine phosphorylation only in congenic rats. In cryosections of native RPE/choroid, GDI1 colocalized with MERTK and the intracellular tyrosine-kinase SRC. In cultured RPE-J cells, and in transfected heterologous cells, MERTK stimulated SRC-mediated tyrosine phosphorylation of GDI1. In OS-fed RPE-J cells, GDI1 colocalized with MERTK and SRC on apparent phagosomes located near the apical membrane. In addition, both GDI1 and RAB5, a regulator of vesicular transport, colocalized with ingested OS. Taken together, these findings identify a novel role of MERTK signaling in membrane trafficking in the RPE that is likely to subserve mechanisms of phagosome formation. PMID:26283020

  4. GTP but not GDP analogues promote association of ADP-ribosylation factors, 20-kDa protein activators of cholera toxin, with phospholipids and PC-12 cell membranes.

    PubMed

    Walker, M W; Bobak, D A; Tsai, S C; Moss, J; Vaughan, M

    1992-02-15

    ADP-ribosylation factors (ARFs) are a family of approximately 20-kDa guanine nucleotide-binding proteins initially identified by their ability to enhance cholera toxin ADP-ribosyltransferase activity in the presence of GTP. ARFs have been purified from both membrane and cytosolic fractions. ARF purified from bovine brain cytosol requires phospholipid plus detergent for high affinity guanine nucleotide binding and for optimal enhancement of cholera toxin ADP-ribosyltransferase activity. The phospholipid requirements, combined with a putative role for ARF in vesicular transport, suggested that the soluble protein might interact reversibly with membranes. A polyclonal antibody against purified bovine ARF (sARF II) was used to detect ARF by immunoblot in membrane and soluble fractions from rat pheochromocytoma (PC-12) cell homogenates. ARF was predominantly cytosolic but increased in membranes during incubation of homogenates with nonhydrolyzable GTP analogues guanosine 5'-O-(3-thiotriphosphate), guanylyl-(beta gamma-imido)-diphosphate, and guanylyl-(beta gamma-methylene)-diphosphate, and to a lesser extent, adenosine 5'-O-(3-thiotriphosphate). GTP, GDP, GMP, and ATP were inactive. Cytosolic ARF similarly associated with added phosphatidylserine, phosphatidylinositol, or cardiolipin in GTP gamma S-dependent fashion. ARF binding to phosphatidylserine was reversible and coincident with stimulation of cholera toxin-catalyzed ADP-ribosylation. These observations may reflect a mechanism by which ARF could cycle between soluble and membrane compartments in vivo. PMID:1737779

  5. Cloning and sequencing of the Candida albicans homologue of SRB1/PSA1/VIG9, the essential gene encoding GDP-mannose pyrophosphorylase in Saccharomyces cerevisiae.

    PubMed

    Warit, S; Walmsley, R M; Stateva, L I

    1998-09-01

    Two genomic fragments have been isolated from Candida albicans which strongly hybridize to SRB1/PSA1/VIG9, an essential gene which encodes GDP-mannose pyrophosphorylase in Saccharomyces cerevisiae. A common 2.5 kb Xbal-Pstl fragment has been identified, which Southern analysis suggests is most likely unique in the C. albicans genome. The fragment contains an ORF, which is 82% identical and 90% homologous to the Srb1p/Psa1p/Vig9p from S. cerevisiae, contains one additional amino acid at position 254 and is able to functionally complement the major phenotypic characteristics of S. cerevisiae srb1 null and conditional mutations. The authors therefore conclude that they have cloned and sequenced from C. albicans the bona fide homologue of SRB1/PSA1/VIG9, named hereafter CaSRB1. Northern analysis data indicate that the gene is expressed in C. albicans under conditions of growth in the yeast and hyphal form and suggest that its expression might be regulated. PMID:9782489

  6. Expression analysis of the VTC2 and VTC5 genes encoding GDP-L-galactose phosphorylase, an enzyme involved in ascorbate biosynthesis, in Arabidopsis thaliana.

    PubMed

    Gao, Yongshun; Badejo, Adebanjo Ayobamidele; Shibata, Hitoshi; Sawa, Yoshihiro; Maruta, Takanori; Shigeoka, Shigeru; Page, Mike; Smirnoff, Nicholas; Ishikawa, Takahiro

    2011-01-01

    Arabidopsis thaliana contains two GDP-L-galactose phosphorylase genes, VTC2 and VTC5, which are critical for ascorbate (AsA) biosynthesis. We investigated the expression levels of both VTC2 and VTC5 genes in wild-type A. thaliana and the AsA deficient mutants during early seedling growth. Ascorbate accumulated to an equal extent in all genotypes up to 5 d post-germination (DPG). The transcript level of VTC2 was dominant, and increased in parallel with AsA accumulation in the wild type. On the other hand, the expression of VTC5 compensated for the reduced VTC2 transcription levels in the AsA deficient mutant vtc2-1 in young seedlings. A luciferase activity assay indicated that the VTC5 promoter was more active in young (2 DPG) cotyledons and that the VTC2 and VTC5 promoters drove a day-to-night variation in expression. The present work provides clues to the precise roles of VTC2 and VTC5 in AsA biosynthesis in A. thaliana at the young seedling stage. PMID:21897033

  7. Analysis of GDP-D-mannose pyrophosphorylase gene promoter from acerola (Malpighia glabra) and increase in ascorbate content of transgenic tobacco expressing the acerola gene.

    PubMed

    Badejo, Adebanjo A; Tanaka, Nobukazu; Esaka, Muneharu

    2008-01-01

    GDP-D-mannose pyrophosphorylase (GMP) is an important enzyme in the Smirnoff-Wheeler's pathway for the biosynthesis of ascorbic acid (AsA) in plants. We have reported recently that the expression of the acerola (Malpighia glabra) GMP gene, designated MgGMP, correlates with the AsA content of the plant. The acerola plant has very high levels of AsA relative to better studied model plants such as Arabidopsis. Here we found that the GMP mRNA levels in acerola are higher than those from Arabidopsis and tomato. Also, the transient expression of the uidA reporter gene in the protoplasts of Nicotiana tabacum cultures showed the MgGMP gene promoter to have higher activity than the cauliflower mosaic virus 35S and Arabidopsis GMP promoters. The AsA content of transgenic tobacco plants expressing the MgGMP gene including its promoter was about 2-fold higher than that of the wild type. PMID:18037674

  8. Substance Use during Pregnancy Varies by Race and Ethnicity

    MedlinePlus

    ... 10, 2012 Substance Use during Pregnancy Varies by Race and Ethnicity When pregnant women use alcohol, tobacco, ... indicate that substance use during pregnancy varies by race and ethnicity and suggest that health care providers ...

  9. Comparison of Linear Microinstability Calculations of Varying Input Realism

    SciTech Connect

    G. Rewoldt

    2003-09-08

    The effect of varying ''input realism'' or varying completeness of the input data for linear microinstability calculations, in particular on the critical value of the ion temperature gradient for the ion temperature gradient mode, is investigated using gyrokinetic and gyrofluid approaches. The calculations show that varying input realism can have a substantial quantitative effect on the results.

  10. Heat resistance and salt hypersensitivity in Lactococcus lactis due to spontaneous mutation of llmg_1816 (gdpP) induced by high-temperature growth.

    PubMed

    Smith, William M; Pham, Thi Huong; Lei, Lin; Dou, Junchao; Soomro, Aijaz H; Beatson, Scott A; Dykes, Gary A; Turner, Mark S

    2012-11-01

    During construction of several gene deletion mutants in Lactococcus lactis MG1363 which involved a high-temperature (37.5°C) incubation step, additional spontaneous mutations were observed which resulted in stable heat resistance and in some cases salt-hypersensitive phenotypes. Whole-genome sequencing of one strain which was both heat resistant and salt hypersensitive, followed by PCR and sequencing of four other mutants which shared these phenotypes, revealed independent mutations in llmg_1816 in all cases. This gene encodes a membrane-bound stress signaling protein of the GdpP family, members of which exhibit cyclic dimeric AMP (c-di-AMP)-specific phosphodiesterase activity. Mutations were predicted to lead to single amino acid substitutions or protein truncations. An independent llmg_1816 mutant (Δ1816), created using a suicide vector, also displayed heat resistance and salt hypersensitivity phenotypes which could be restored to wild-type levels following plasmid excision. L. lactis Δ1816 also displayed improved growth in response to sublethal concentrations of penicillin G. High-temperature incubation of a wild-type industrial L. lactis strain also resulted in spontaneous mutation of llmg_1816 and heat-resistant and salt-hypersensitive phenotypes, suggesting that this is not a strain-specific phenomenon and that it is independent of a plasmid integration event. Acidification of milk by the llmg_1816-altered strain was inhibited by lower salt concentrations than the parent strain. This study demonstrates that spontaneous mutations can occur during high-temperature growth of L. lactis and that inactivation of llmg_1816 leads to temperature resistance and salt hypersensitivity. PMID:22923415

  11. TrkBT1 Induces Liver Metastasis of Pancreatic Cancer Cells by Sequestering Rho GDP Dissociation Inhibitor and Promoting RhoA Activation

    PubMed Central

    Li, Zhongkui; Chang, Zhe; Chiao, Lucia J.; Kang, Ya’an; Xia, Qianghua; Zhu, Cihui; Fleming, Jason B.; Evans, Douglas B.; Chiao, Paul J.

    2011-01-01

    Many genetic and molecular alterations, such as K-ras mutation and NF-κB activation, have been identified in pancreatic cancer. However, the mechanisms by which pancreatic cancer metastasizes still remain to be determined. Although we previously showed that the tropomyosin-related kinase B (TrkB) was significantly correlated with the development of liver metastasis, its function in pancreatic cancer metastasis remained unresolved. In the present study, we showed that overexpressed TrkB is an alternatively spliced transcript variant of TrkB (TrkBT1) with a unique COOH-terminal 12–amino acid sequence and is mainly localized in the cytoplasm. Our results showed that overexpression of Flag-tagged TrkBT1 but not a Flag-tagged TrkBT1 COOH-terminal deletion mutant (Flag-TrkBT1ΔC) in nonmetastatic pancreatic cancer cells enhanced cell proliferation, promoted formation of colonies in soft agar, stimulated tumor cell invasion, and induced liver metastasis in an orthotopic xenograft mouse model of pancreatic cancer. TrkBT1 interacted with Rho GDP dissociation inhibitor (GDI) in vivo, but Flag-TrkBT1ΔC did not. Furthermore, overexpression of Flag-TrkBT1 and knockdown of RhoGDI expression by RhoGDI short hairpin RNAs promoted RhoA activation, but Flag-TrkBT1ΔC overexpression did not. Therefore, our results showed that TrkBT1 overexpression induces liver metastasis of pancreatic cancer and uncovered a unique signaling mechanism by which TrkBT1 sequesters GDI and activates RhoA signaling. PMID:19773448

  12. Allelic variation in paralogs of GDP-L-galactose phosphorylase is a major determinant of vitamin C concentrations in apple fruit.

    PubMed

    Mellidou, Ifigeneia; Chagné, David; Laing, William A; Keulemans, Johan; Davey, Mark W

    2012-11-01

    To identify the genetic factors underlying the regulation of fruit vitamin C (L-ascorbic acid [AsA]) concentrations, quantitative trait loci (QTL) studies were carried out in an F1 progeny derived from a cross between the apple (Malus × domestica) cultivars Telamon and Braeburn over three years. QTL were identified for AsA, glutathione, total antioxidant activity in both flesh and skin tissues, and various quality traits, including flesh browning. Four regions on chromosomes 10, 11, 16, and 17 contained stable fruit AsA-QTL clusters. Mapping of AsA metabolic genes identified colocations between orthologs of GDP-L-galactose phosphorylase (GGP), dehydroascorbate reductase (DHAR), and nucleobase-ascorbate transporter within these QTL clusters. Of particular interest are the three paralogs of MdGGP, which all colocated within AsA-QTL clusters. Allelic variants of MdGGP1 and MdGGP3 derived from the cultivar Braeburn parent were also consistently associated with higher fruit total AsA concentrations both within the mapping population (up to 10-fold) and across a range of commercial apple germplasm (up to 6-fold). Striking differences in the expression of the cv Braeburn MdGGP1 allele between fruit from high- and low-AsA genotypes clearly indicate a key role for MdGGP1 in the regulation of fruit AsA concentrations, and this MdGGP allele-specific single-nucleotide polymorphism marker represents an excellent candidate for directed breeding for enhanced fruit AsA concentrations. Interestingly, colocations were also found between MdDHAR3-3 and a stable QTL for browning in the cv Telamon parent, highlighting links between the redox status of the AsA pool and susceptibility to flesh browning. PMID:23001142

  13. Heat Resistance and Salt Hypersensitivity in Lactococcus lactis Due to Spontaneous Mutation of llmg_1816 (gdpP) Induced by High-Temperature Growth

    PubMed Central

    Smith, William M.; Pham, Thi Huong; Lei, Lin; Dou, Junchao; Soomro, Aijaz H.; Beatson, Scott A.; Dykes, Gary A.

    2012-01-01

    During construction of several gene deletion mutants in Lactococcus lactis MG1363 which involved a high-temperature (37.5°C) incubation step, additional spontaneous mutations were observed which resulted in stable heat resistance and in some cases salt-hypersensitive phenotypes. Whole-genome sequencing of one strain which was both heat resistant and salt hypersensitive, followed by PCR and sequencing of four other mutants which shared these phenotypes, revealed independent mutations in llmg_1816 in all cases. This gene encodes a membrane-bound stress signaling protein of the GdpP family, members of which exhibit cyclic dimeric AMP (c-di-AMP)-specific phosphodiesterase activity. Mutations were predicted to lead to single amino acid substitutions or protein truncations. An independent llmg_1816 mutant (Δ1816), created using a suicide vector, also displayed heat resistance and salt hypersensitivity phenotypes which could be restored to wild-type levels following plasmid excision. L. lactis Δ1816 also displayed improved growth in response to sublethal concentrations of penicillin G. High-temperature incubation of a wild-type industrial L. lactis strain also resulted in spontaneous mutation of llmg_1816 and heat-resistant and salt-hypersensitive phenotypes, suggesting that this is not a strain-specific phenomenon and that it is independent of a plasmid integration event. Acidification of milk by the llmg_1816-altered strain was inhibited by lower salt concentrations than the parent strain. This study demonstrates that spontaneous mutations can occur during high-temperature growth of L. lactis and that inactivation of llmg_1816 leads to temperature resistance and salt hypersensitivity. PMID:22923415

  14. Identification of functional elements of the GDP-fucose transporter SLC35C1 using a novel Chinese hamster ovary mutant.

    PubMed

    Zhang, Peiqing; Haryadi, Ryan; Chan, Kah Fai; Teo, Gavin; Goh, John; Pereira, Natasha Ann; Feng, Huatao; Song, Zhiwei

    2012-07-01

    The GDP-fucose transporter SLC35C1 critically regulates the fucosylation of glycans. Elucidation of its structure-function relationships remains a challenge due to the lack of an appropriate mutant cell line. Here we report a novel Chinese hamster ovary (CHO) mutant, CHO-gmt5, generated by the zinc-finger nuclease technology, in which the Slc35c1 gene was knocked out from a previously reported CHO mutant that has a dysfunctional CMP-sialic acid transporter (CST) gene (Slc35a1). Consequently, CHO-gmt5 harbors double genetic defects in Slc35a1 and Slc35c1 and produces N-glycans deficient in both sialic acid and fucose. The structure-function relationships of SLC35C1 were studied using CHO-gmt5 cells. In contrast to the CST and UDP-galactose transporter, the C-terminal tail of SLC35C1 is not required for its Golgi localization but is essential for generating glycans that are recognized by a fucose-binding lectin, Aleuria aurantia lectin (AAL), suggesting an important role in the transport activity of SLC35C1. Furthermore, we found that this impact can be independently contributed by a cluster of three lysine residues and a Glu-Met (EM) sequence within the C terminus. We also showed that the conserved glycine residues at positions 180 and 277 of SLC35C1 have significant impacts on AAL binding to CHO-gmt5 cells, suggesting that these conserved glycine residues are required for the transport activity of Slc35 proteins. The absence of sialic acid and fucose on Fc N-glycan has been independently shown to enhance the antibody-dependent cellular cytotoxicity (ADCC) effect. By combining these features into one cell line, we postulate that CHO-gmt5 may represent a more advantageous cell line for the production of recombinant antibodies with enhanced ADCC effect. PMID:22492235

  15. Specific residues of the GDP/GTP exchange factor Bud5p are involved in establishment of the cell type-specific budding pattern in yeast.

    PubMed

    Kang, Pil Jung; Lee, Bongyong; Park, Hay-Oak

    2004-07-01

    Cells of the budding yeast undergo oriented cell division by choosing a specific site for growth depending on their cell type. Haploid a and alpha cells bud in an axial pattern whereas diploid a/alpha cells bud in a bipolar pattern. The Ras-like GTPase Rsr1p/Bud1p, its GDP-GTP exchange factor Bud5p, and its GTPase-activating protein Bud2p are essential for selecting the proper site for polarized growth in all cell types. Here we showed that specific residues at the N terminus and the C terminus of Bud5p were important for bipolar budding, while some residues were involved in both axial and bipolar budding. These bipolar-specific mutations of BUD5 disrupted proper localization of Bud5p in diploid a/alpha cells without affecting Bud5p localization in haploid alpha cells. In contrast, Bud5p expressed in the bud5 mutants defective in both budding patterns failed to localize in all cell types. Thus, these results identify specific residues of Bud5p that are likely to be involved in direct interaction with spatial landmarks, which recruit Bud5p to the proper bud site. Finally, we found a new start codon of BUD5, which extends the open reading frame to 210 bp upstream of the previously estimated start site, thus encoding a polypeptide of 608 amino acid residues. Bud5p with these additional N-terminal residues interacted with Bud8p, a potential bipolar landmark, suggesting that the N-terminal region is necessary for recognition of the spatial cues. PMID:15136576

  16. Cloning and characterization of bovine low molecular weight GTPases (Rac1 and Rac2) and rho GDP-dissociation inhibitor 2 (D4-GDI).

    PubMed

    Davis, A R; Clements, M K; Bunger, P L; Siemsen, D W; Quinn, M T

    2000-05-23

    GTPases of the Rho family play important roles in human leukocyte signal transduction pathways; however, little is known about the function of these proteins in bovine cells. In the present studies, we isolated molecular clones of bovine Rac1, Rac2, and the Rac/Rho GTPase regulatory protein D4-GDP dissociation inhibitor (D4-GDI) from a bovine bone marrow cDNA library. These clones contained complete open reading frames, encoding 192, 192, and 200 amino acids, respectively. Comparison of the bovine amino acid sequences with those of other species demonstrated a high degree of identity of these proteins across all species, suggesting that these proteins likely play conserved functional roles in bovine leukocyte signal transduction pathways. Comparative Western blotting of these proteins in human and bovine neutrophil cytosol demonstrated that Rac2 was the predominant Rac species and that D4-GDI was the predominant GDI species in bovine neutrophil cytosol. Despite the high degree of homology between human and bovine Rac2, some of the anti-peptide antibody probes prepared against human Rac2 failed to recognize the bovine homologue. We also showed by subcellular fractionation techniques that Rac2 is localized primarily to the cytosolic compartment of resting bovine neutrophils, but is translocated to the plasma membrane after stimulation with PMA. These findings suggest that Rac2 does play a role in bovine neutrophil activation. In addition, these data will be helpful in developing more specific probes for investigating the role of these proteins in bovine leukocyte signal transduction pathways and for studying various inflammatory diseases in cattle. PMID:10802295

  17. Cloning and expression of GDP-D-mannose pyrophosphorylase gene and ascorbic acid content of acerola (Malpighia glabra L.) fruit at ripening stages.

    PubMed

    Badejo, Adebanjo A; Jeong, Seok T; Goto-Yamamoto, Nami; Esaka, Muneharu

    2007-09-01

    Acerola (Malpighia glabra L.) is one of the richest natural sources of L-ascorbic acid (AsA; vitamin C). GDP-D-mannose pyrophosphorylase (GMP; EC 2.7.7.13) was found to play a major role in the proposed AsA biosynthetic pathway in plants, considering that Arabidopsis vtc1-1 mutant with point mutation in this gene has a highly reduced AsA content. GMP cDNA was isolated from acerola fruits, designated MgGMP, using rapid amplification of cDNA ends (RACE), and its expression was monitored during fruit ripening. The full-length cDNA was found to have an ORF of 1083bp encoding a polypeptide of 361 amino acids. In silico analysis of the predicted amino acid sequence showed a pI of 6.45 and molecular mass of 39.7kD. MgGMP showed over 80% amino acid sequence identity with other plant GMP homologues. The phylogenetic tree shows the close relation of MgGMP to the GMP of other plants as against those from parasite, yeasts and mammals. Southern analysis indicated that M. glabra contains not less than two copies of GMP genes. Northern blot analysis showed the transcript abundance of MgGMP in all the organs of acerola examined, with the fruit having the highest expression. The relative transcript abundance of MgGMP mRNA levels in the fruits changes as the ripening process progresses, with the unripe green fruits having the highest relative mRNA level, and the lowest was found in the fruits at advanced ripening stage. A strong correlation was also observed between the relative MgGMP mRNA levels and the AsA contents of acerola during fruit ripening. PMID:17764967

  18. Holographic cinematography of time-varying reflecting and time-varying phase objects using a Nd:YAG laser

    NASA Technical Reports Server (NTRS)

    Decker, A. J.

    1982-01-01

    The use of a Nd:YAG laser to record holographic motion pictures of time-varying reflecting objects and time-varying phase objects is discussed. Sample frames from both types of holographic motion pictures are presented. The holographic system discussed is intended for three-dimensional flow visualization of the time-varying flows that occur in jet-engine components.

  19. GDP (Gemcitabine, Dexamethasone, and Cisplatin) Is Highly Effective and Well-Tolerated for Newly Diagnosed Stage IV and Relapsed/Refractory Extranodal Natural Killer/T-Cell Lymphoma, Nasal Type

    PubMed Central

    Wang, Jing-jing; Dong, Mei; He, Xiao-hui; Li, Ye-xiong; Wang, Wei-hu; Liu, Peng; Yang, Jian-liang; Gui, Lin; Zhang, Chang-gong; Yang, Sheng; Zhou, Sheng-yu; Shi, Yuan-kai

    2016-01-01

    Abstract This study was conducted to evaluate the effectiveness and tolerance of GDP (gemcitabine, dexamethasone, and cisplatin) regimen in patients with newly diagnosed stage IV and relapsed/refractory extranodal natural killer/T-cell lymphoma, nasal type (ENKTL). The study enrolled 41 ENKTL patients who received GDP regimen at the Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College between January 2008 and January 2015. The disease status was newly diagnosed stage IV in 15 patients and relapsed/refractory in 26 patients. The median number of cycles of chemotherapy per patient was 6 (range, 2–8 cycles). The overall response rate and complete-remission rate were 83.0% (34/41) and 41.5% (17/41), respectively. After a median follow-up of 16.2 months, 1-year progression-free survival rate and 1-year overall survival rate for the whole cohort were 54.5% and 72.7%. Grade 3 to 4 adverse events included neutropenia (34.1%), thrombocytopenia (19.5%), and anemia (14.6%). Our study has suggested high efficacy and low toxicity profile of GDP regimen in patients with newly diagnosed stage IV and relapsed/refractory ENKTL. PMID:26871836

  20. DFT (B3LYP/LanL2DZ and B3LYP/6311G+(d,p)) comparative vibrational spectroscopic analysis of organic-inorganic compound bis(4-acetylanilinium) tetrachlorocuprate(II)

    NASA Astrophysics Data System (ADS)

    Abkari, A.; Chaabane, I.; Guidara, K.

    2016-07-01

    The organic-inorganic salt, bis(4-acetylanilinium) tetrachlorocuprate(II), was synthesized and characterized by means of FT-IR (4000-400 cm-1) and Raman (3500-50 cm-1) in solid phase. The structure of [C8H10NO]2CuCl4 compound which was optimized by density functional theory (DFT) using B3LYP method showed that the calculated values obtained by B3LYP with LanL2DZ and 6311G+(d,p) basis sets are in better agreement with the experimental data. The computed vibrational frequencies were scaled by different scale factors to yield a good agreement with the experimental vibrational frequencies. The latter have been discussed on the basis of quantum chemical DFT calculations using the B3LYP/6311G+(d,p) and B3LYP/LanL2DZ method approach in gas phase. Besides, the effects due to the substitutions and the intermolecular interactions were investigated. The comparative analysis of the Raman spectra of the title compound with that of the free ligand was also discussed. The geometries and normal modes of the vibrations obtained from B3LYP/6311G+(d,p) calculation are found to be in good agreement with the experimentally observed data. The complete vibrational assignments and analysis of the observed fundamental bands of molecule were carried out.

  1. GDP (Gemcitabine, Dexamethasone, and Cisplatin) Is Highly Effective and Well-Tolerated for Newly Diagnosed Stage IV and Relapsed/Refractory Extranodal Natural Killer/T-Cell Lymphoma, Nasal Type.

    PubMed

    Wang, Jing-Jing; Dong, Mei; He, Xiao-Hui; Li, Ye-Xiong; Wang, Wei-Hu; Liu, Peng; Yang, Jian-Liang; Gui, Lin; Zhang, Chang-Gong; Yang, Sheng; Zhou, Sheng-Yu; Shi, Yuan-Kai

    2016-02-01

    This study was conducted to evaluate the effectiveness and tolerance of GDP (gemcitabine, dexamethasone, and cisplatin) regimen in patients with newly diagnosed stage IV and relapsed/refractory extranodal natural killer/T-cell lymphoma, nasal type (ENKTL).The study enrolled 41 ENKTL patients who received GDP regimen at the Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College between January 2008 and January 2015.The disease status was newly diagnosed stage IV in 15 patients and relapsed/refractory in 26 patients. The median number of cycles of chemotherapy per patient was 6 (range, 2-8 cycles). The overall response rate and complete-remission rate were 83.0% (34/41) and 41.5% (17/41), respectively. After a median follow-up of 16.2 months, 1-year progression-free survival rate and 1-year overall survival rate for the whole cohort were 54.5% and 72.7%. Grade 3 to 4 adverse events included neutropenia (34.1%), thrombocytopenia (19.5%), and anemia (14.6%).Our study has suggested high efficacy and low toxicity profile of GDP regimen in patients with newly diagnosed stage IV and relapsed/refractory ENKTL. PMID:26871836

  2. Propagation of phase modulation signals in time-varying plasma

    NASA Astrophysics Data System (ADS)

    Yang, Min; Li, Xiaoping; Wang, Di; Liu, Yanming; He, Pan

    2016-05-01

    The effects of time-varying plasma to the propagation of phase modulation signals are investigated in this paper. Through theoretical analysis, the mechanism of the interaction between the time-varying plasma and the phase modulation signal is given. A time-varying plasma generator which could produce arbitrary time-varying plasma is built by adjusting the discharge power. A comparison of results from experiment and simulation prove that the time-varying plasma could cause the special rotation of QPSK (Quadrature Phase Shift Keying) constellation, and the mechanism of constellation point's rotation is analyzed. Additionally, the experimental results of the QPSK signals' EVM (Error Vector Magnitude) after time-varying and time-invariant plasma with different ωp/ω are given. This research could be used to improve the TT&C (Tracking Telemeter and Command) system of re-entry vehicles.

  3. Activation of the Regulator of G protein Signaling 14 (RGS14):Gαi1-GDP signaling complex is regulated by Resistance to Inhibitors of Cholinesterase-8A (Ric-8A)

    PubMed Central

    Vellano, Christopher P.; Shu, Feng-jue; Ramineni, Suneela; Yates, Cindee K.; Tall, Gregory G.; Hepler, John R.

    2011-01-01

    RGS14 is a brain scaffolding protein that integrates G protein and MAP kinase signaling pathways. Like other RGS proteins, RGS14 is a GTPase activating protein (GAP) that terminates Gαi/o signaling. Unlike other RGS proteins, RGS14 also contains a G protein regulatory (also known as GoLoco) domain that binds Gαi1/3-GDP in cells and in vitro. Here we report that Ric-8A, a non-receptor guanine nucleotide exchange factor (GEF), functionally interacts with the RGS14:Gαi1-GDP signaling complex to regulate its activation state. RGS14 and Ric-8A are recruited from the cytosol to the plasma membrane in the presence of co-expressed Gαi1 in cells, suggesting formation of a functional protein complex with Gαi1. Consistent with this idea, Ric-8A stimulates dissociation of the RGS14:Gαi1-GDP complex in cells and in vitro using purified proteins. Purified Ric-8A stimulates dissociation of the RGS14:Gαi1-GDP complex to form a stable Ric-8A:Gαi complex in the absence of GTP. In the presence of activating nucleotide, Ric-8A interacts with the RGS14:Gαi1-GDP complex to stimulate both the steady-state GTPase activity of Gαi1 and GTP binding to Gαi1. However, sufficiently high concentrations of RGS14 competitively reverse these stimulatory effects of Ric-8A on Gαi1 nucleotide binding and GTPase activity. This observation correlates with findings that show RGS14 and Ric-8A share an overlapping binding region within the last 11 amino acids of Gαi1. As further evidence that these proteins are functionally linked, native RGS14 and Ric-8A co-exist within the same hippocampal neurons. These findings demonstrate that RGS14 is a newly appreciated integrator of unconventional Ric-8A and Gαi1 signaling. PMID:21158412

  4. Biosynthesis of the Common Polysaccharide Antigen of Pseudomonas aeruginosa PAO1: Characterization and Role of GDP-d-Rhamnose:GlcNAc/GalNAc-Diphosphate-Lipid α1,3-d-Rhamnosyltransferase WbpZ

    PubMed Central

    Wang, Shuo; Hao, Youai; Lam, Joseph S.; Vlahakis, Jason Z.; Szarek, Walter A.; Vinnikova, Anna; Veselovsky, Vladimir V.

    2015-01-01

    ABSTRACT The opportunistic pathogen Pseudomonas aeruginosa produces two major cell surface lipopolysaccharides, characterized by distinct O antigens, called common polysaccharide antigen (CPA) and O-specific antigen (OSA). CPA contains a polymer of d-rhamnose (d-Rha) in α1-2 and α1-3 linkages. Three putative glycosyltransferase genes, wbpX, wbpY, and wbpZ, are part of the CPA biosynthesis cluster. To characterize the enzymatic function of the wbpZ gene product, we chemically synthesized the donor substrate GDP-d-Rha and enzymatically synthesized GDP-d-[3H]Rha. Using nuclear magnetic resonance (NMR) spectroscopy, we showed that WbpZ transferred one d-Rha residue from GDP-d-Rha in α1-3 linkage to both GlcNAc- and GalNAc-diphosphate-lipid acceptor substrates. WbpZ is also capable of transferring d-mannose (d-Man) to these acceptors. Therefore, WbpZ has a relaxed specificity with respect to both acceptor and donor substrates. The diphosphate group of the acceptor, however, is required for activity. WbpZ does not require divalent metal ion for activity and exhibits an unusually high pH optimum of 9. WbpZ from PAO1 is therefore a GDP-d-Rha:GlcNAc/GalNAc-diphosphate-lipid α1,3-d-rhamnosyltransferase that has significant activity of GDP-d-Man:GlcNAc/GalNAc-diphosphate-lipid α1,3-d-mannosyltransferase. We used site-directed mutagenesis to replace the Asp residues of the two DXD motifs with Ala. Neither of the mutant constructs of wbpZ (D172A or D254A) could be used to rescue CPA biosynthesis in the ΔwbpZ knockout mutant in a complementation assay. This suggested that D172 and D254 are essential for WbpZ function. This work is the first detailed characterization study of a d-Rha-transferase and a critical step in the development of CPA synthesis inhibitors. IMPORTANCE This is the first characterization of a d-rhamnosyltransferase and shows that it is essential in Pseudomonas aeruginosa for the synthesis of the common polysaccharide antigen. PMID:25845842

  5. Purification, cDNA cloning, and expression of GDP-L-Fuc:Asn-linked GlcNAc alpha1,3-fucosyltransferase from mung beans.

    PubMed

    Leiter, H; Mucha, J; Staudacher, E; Grimm, R; Glössl, J; Altmann, F

    1999-07-30

    Substitution of the asparagine-linked GlcNAc by alpha1,3-linked fucose is a widespread feature of plant as well as of insect glycoproteins, which renders the N-glycan immunogenic. We have purified from mung bean seedlings the GDP-L-Fuc:Asn-linked GlcNAc alpha1,3-fucosyltransferase (core alpha1,3-fucosyltransferase) that is responsible for the synthesis of this linkage. The major isoform had an apparent mass of 54 kDa and isoelectric points ranging from 6. 8 to 8.2. From that protein, four tryptic peptides were isolated and sequenced. Based on an approach involving reverse transcriptase-polymerase chain reaction with degenerate primers and rapid amplification of cDNA ends, core alpha1,3-fucosyltransferase cDNA was cloned from mung bean mRNA. The 2200-base pair cDNA contained an open reading frame of 1530 base pairs that encoded a 510-amino acid protein with a predicted molecular mass of 56.8 kDa. Analysis of cDNA derived from genomic DNA revealed the presence of three introns within the open reading frame. Remarkably, from the four exons, only exon II exhibited significant homology to animal and bacterial alpha1,3/4-fucosyltransferases which, though, are responsible for the biosynthesis of Lewis determinants. The recombinant fucosyltransferase was expressed in Sf21 insect cells using a baculovirus vector. The enzyme acted on glycopeptides having the glycan structures GlcNAcbeta1-2Manalpha1-3(GlcNAcbeta1-2Manalpha1- 6)Manbeta1-4GlcNAcbet a1-4GlcNAcbeta1-Asn, GlcNAcbeta1-2Manalpha1-3(GlcNAcbeta1-2Manalpha1- 6)Manbeta1-4GlcNAcbet a1-4(Fucalpha1-6)GlcNAcbeta1-Asn, and GlcNAcbeta1-2Manalpha1-3[Manalpha1-3(Manalpha1-6 )Manalpha1-6]Manbeta1 -4GlcNAcbeta1-4GlcNAcbeta1-Asn but not on, e.g. N-acetyllactosamine. The structure of the core alpha1,3-fucosylated product was verified by high performance liquid chromatography of the pyridylaminated glycan and by its insensitivity to N-glycosidase F as revealed by matrix-assisted laser desorption/ionization time of flight mass

  6. Modification of epidermal growth factor-like repeats with O-fucose. Molecular cloning and expression of a novel GDP-fucose protein O-fucosyltransferase.

    PubMed

    Wang, Y; Shao, L; Shi, S; Harris, R J; Spellman, M W; Stanley, P; Haltiwanger, R S

    2001-10-26

    The O-fucose modification is found on epidermal growth factor-like repeats of a number of cell surface and secreted proteins. O-Fucose glycans play important roles in ligand-induced receptor signaling. For example, elongation of O-fucose on Notch by the beta1,3-N-acetylglucosaminyltransferase Fringe modulates the ability of Notch to respond to its ligands. The enzyme that adds O-fucose to epidermal growth factor-like repeats, GDP-fucose protein O-fucosyltransferase (O-FucT-1), was purified previously from Chinese hamster ovary (CHO) cells. Here we report the isolation of a cDNA that encodes human O-FucT-1. A probe deduced from N-terminal sequence analysis of purified CHO O-FucT-1 was used to screen a human heart cDNA library and expressed sequence tag and genomic data bases. The cDNA contains an open reading frame encoding a protein of 388 amino acids with a predicted N-terminal transmembrane sequence typical of a type II membrane orientation. Likewise, the mouse homolog obtained from an expressed sequence tag and 5'-rapid amplification of cDNA ends of a mouse liver cDNA library encodes a type II transmembrane protein of 393 amino acids with 90.4% identity to human O-FucT-1. Homologs were also found in Drosophila and Caenorhabditis elegans with 41.2 and 29.4% identity to human O-FucT-1, respectively. The human gene (POFUT1) is on chromosome 20 between PLAGL2 and KIF3B, near the centromere at 20p11. The mouse gene (Pofut1) maps near Plagl2 on a homologous region of mouse chromosome 2. POFUT1 gene transcripts were expressed in all tissues examined, consistent with the widespread localization of the modification. Expression of a soluble form of human O-FucT-1 in insect cells yielded a protein of the predicted molecular weight with O-FucT-1 kinetic and enzymatic properties similar to those of O-FucT-1 purified from CHO cells. The identification of the gene encoding protein O-fucosyltransferase I now makes possible mutational strategies to examine the functions of the

  7. Common community structure in time-varying networks

    NASA Astrophysics Data System (ADS)

    Zhang, Shihua; Zhao, Junfei; Zhang, Xiang-Sun

    2012-05-01

    In this report we introduce the concept of common community structure in time-varying networks. We propose a novel optimization algorithm to rapidly detect common community structure in such networks. Both theoretical and numerical results show that the proposed method not only can resolve detailed common communities, but also can effectively identify the dynamical phenomena in time-varying networks.

  8. Specimen loading list for the varying temperature experiment

    SciTech Connect

    Qualls, A.L.; Sitterson, R.G.

    1998-09-01

    The varying temperature experiment HFIR-RB-13J has been assembled and inserted in the reactor. Approximately 5300 specimens were cleaned, inspected, matched, and loaded into four specimen holders. A listing of each specimen loaded into the steady temperature holder, its position in the capsule, and the identification of the corresponding specimen loaded into the varying temperature holder is presented in this report.

  9. How Do Parenting Concepts Vary within and between the Families?

    ERIC Educational Resources Information Center

    Roskam, Isabelle; Meunier, Jean Christophe

    2009-01-01

    How do parenting concepts vary within and between the families? The present study regards parenting as a complex family process by considering three concepts of parenting: styles, differential treatment and coparenting consistency. A main question was addressed: whether and how these parenting concepts vary within the families towards siblings or…

  10. Time varying voltage combustion control and diagnostics sensor

    DOEpatents

    Chorpening, Benjamin T.; Thornton, Jimmy D.; Huckaby, E. David; Fincham, William

    2011-04-19

    A time-varying voltage is applied to an electrode, or a pair of electrodes, of a sensor installed in a fuel nozzle disposed adjacent the combustion zone of a continuous combustion system, such as of the gas turbine engine type. The time-varying voltage induces a time-varying current in the flame which is measured and used to determine flame capacitance using AC electrical circuit analysis. Flame capacitance is used to accurately determine the position of the flame from the sensor and the fuel/air ratio. The fuel and/or air flow rate (s) is/are then adjusted to provide reduced flame instability problems such as flashback, combustion dynamics and lean blowout, as well as reduced emissions. The time-varying voltage may be an alternating voltage and the time-varying current may be an alternating current.

  11. Estimation of Time-Varying Pilot Model Parameters

    NASA Technical Reports Server (NTRS)

    Zaal, Peter M. T.; Sweet, Barbara T.

    2011-01-01

    Human control behavior is rarely completely stationary over time due to fatigue or loss of attention. In addition, there are many control tasks for which human operators need to adapt their control strategy to vehicle dynamics that vary in time. In previous studies on the identification of time-varying pilot control behavior wavelets were used to estimate the time-varying frequency response functions. However, the estimation of time-varying pilot model parameters was not considered. Estimating these parameters can be a valuable tool for the quantification of different aspects of human time-varying manual control. This paper presents two methods for the estimation of time-varying pilot model parameters, a two-step method using wavelets and a windowed maximum likelihood estimation method. The methods are evaluated using simulations of a closed-loop control task with time-varying pilot equalization and vehicle dynamics. Simulations are performed with and without remnant. Both methods give accurate results when no pilot remnant is present. The wavelet transform is very sensitive to measurement noise, resulting in inaccurate parameter estimates when considerable pilot remnant is present. Maximum likelihood estimation is less sensitive to pilot remnant, but cannot detect fast changes in pilot control behavior.

  12. 84. Mabry Mill. The varying roof lines and siding gives ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    84. Mabry Mill. The varying roof lines and siding gives the mill an interesting texture, increasing its photogenic value. Looking north. - Blue Ridge Parkway, Between Shenandoah National Park & Great Smoky Mountains, Asheville, Buncombe County, NC

  13. 253. Mabry Mill. The varying roof lines and siding gives ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    253. Mabry Mill. The varying roof lines and siding gives the mill an interesting texture, increasing its photogenic value. Looking north. - Blue Ridge Parkway, Between Shenandoah National Park & Great Smoky Mountains, Asheville, Buncombe County, NC

  14. Spatially Varying Index of Refraction: An Open Ended Undergraduate Topic.

    ERIC Educational Resources Information Center

    Krueger, David A.

    1980-01-01

    Presents an experiment on the bending of light in a medium with a continuously varying index of refraction. Several theoretical approaches for the analysis of this experiment, designed for college physics students, are also presented. (HM)

  15. Nonlinear Varying Coefficient Models with Applications to Studying Photosynthesis.

    PubMed

    Kürüm, Esra; Li, Runze; Wang, Yang; SEntürk, Damla

    2014-03-01

    Motivated by a study on factors affecting the level of photosynthetic activity in a natural ecosystem, we propose nonlinear varying coefficient models, in which the relationship between the predictors and the response variable is allowed to be nonlinear. One-step local linear estimators are developed for the nonlinear varying coefficient models and their asymptotic normality is established leading to point-wise asymptotic confidence bands for the coefficient functions. Two-step local linear estimators are also proposed for cases where the varying coefficient functions admit different degrees of smoothness; bootstrap confidence intervals are utilized for inference based on the two-step estimators. We further propose a generalized F test to study whether the coefficient functions vary over a covariate. We illustrate the proposed methodology via an application to an ecology data set and study the finite sample performance by Monte Carlo simulation studies. PMID:24976756

  16. Nonlinear Varying Coefficient Models with Applications to Studying Photosynthesis

    PubMed Central

    Kürüm, Esra; Li, Runze; Wang, Yang; ŞEntürk, Damla

    2014-01-01

    Motivated by a study on factors affecting the level of photosynthetic activity in a natural ecosystem, we propose nonlinear varying coefficient models, in which the relationship between the predictors and the response variable is allowed to be nonlinear. One-step local linear estimators are developed for the nonlinear varying coefficient models and their asymptotic normality is established leading to point-wise asymptotic confidence bands for the coefficient functions. Two-step local linear estimators are also proposed for cases where the varying coefficient functions admit different degrees of smoothness; bootstrap confidence intervals are utilized for inference based on the two-step estimators. We further propose a generalized F test to study whether the coefficient functions vary over a covariate. We illustrate the proposed methodology via an application to an ecology data set and study the finite sample performance by Monte Carlo simulation studies. PMID:24976756

  17. Molecular geometry, vibrational frequencies, infrared intensities and CN effective bond charges in a series of simple nitrile compounds: HF/6-31+G(d,p) molecular orbital study

    NASA Astrophysics Data System (ADS)

    Dudev, Todor; Bobadova-Parvanova, Petia; Pencheva, Daniela; Galabov, Boris

    1997-12-01

    The structural and vibrational spectroscopic parameters of a series of simple nitrile compounds were evaluated by HF/6-31+G(d,p) ab initio quantum mechanical calculations. The series includes HCN, FCN, CICN, CH 2FCN, CH 2CICN, CH 3CN, CF 3CN, CCl 3CN, HOCN, HSCN and NH 2CN. The theoretical infrared intensities were transformed into quantities associated with the charge distribution and dynamics in the molecules following the formalism of the effective bond charge method. Satisfactory linear relations were found between the effective bond charges and bond lengths, as well as between the bond charges and the molecular electrostatic potential at the nitrogen atom.

  18. Spatially Varying Coefficient Model for Neuroimaging Data with Jump Discontinuities

    PubMed Central

    Zhu, Hongtu; Fan, Jianqing; Kong, Linglong

    2014-01-01

    Motivated by recent work on studying massive imaging data in various neuroimaging studies, we propose a novel spatially varying coefficient model (SVCM) to capture the varying association between imaging measures in a three-dimensional (3D) volume (or 2D surface) with a set of covariates. Two stylized features of neuorimaging data are the presence of multiple piecewise smooth regions with unknown edges and jumps and substantial spatial correlations. To specifically account for these two features, SVCM includes a measurement model with multiple varying coefficient functions, a jumping surface model for each varying coefficient function, and a functional principal component model. We develop a three-stage estimation procedure to simultaneously estimate the varying coefficient functions and the spatial correlations. The estimation procedure includes a fast multiscale adaptive estimation and testing procedure to independently estimate each varying coefficient function, while preserving its edges among different piecewise-smooth regions. We systematically investigate the asymptotic properties (e.g., consistency and asymptotic normality) of the multiscale adaptive parameter estimates. We also establish the uniform convergence rate of the estimated spatial covariance function and its associated eigenvalues and eigenfunctions. Our Monte Carlo simulation and real data analysis have confirmed the excellent performance of SVCM. PMID:25435598

  19. Energy harvesting under excitations of time-varying frequency

    NASA Astrophysics Data System (ADS)

    Seuaciuc-Osório, Thiago; Daqaq, Mohammed F.

    2010-06-01

    The design and optimization of energy harvesters capable of scavenging energy efficiently from realistic environments require a deep understanding of their transduction under non-stationary and random excitations. Otherwise, their small energy outputs can be further decreased lowering their efficiency and rendering many critical and possibly life saving technologies inefficient. As a first step towards this critical understanding, this effort investigates the response of energy harvesters to harmonic excitations of time-varying frequency. Such excitations can be used to represent the behavior of realistic vibratory environments whose frequency varies or drifts with time. Specifically, we consider a piezoelectric stack-type harvester subjected to a harmonic excitation of constant amplitude and a sinusoidally varying frequency. We analyze the response of the harvester in the fixed-frequency scenario then use the Jacobi-Anger's expansion to analyze the response in the time-varying case. We obtain analytical expressions for the harvester's response, output voltage, and power. In-depth analysis of the attained results reveals that the solution to the more complex time-varying frequency can be understood through a process which "samples" the fixed-frequency response curve at a discrete and fixed frequency interval then multiplies the response by proper weights. Extensive discussions addressing the effect of the excitation parameters on the output power is presented leading to some initial suggestions pertinent to the harvester's design and optimization in the sinusoidally varying frequency case.

  20. Generalized semiparametric varying-coefficient models for longitudinal data

    NASA Astrophysics Data System (ADS)

    Qi, Li

    In this dissertation, we investigate the generalized semiparametric varying-coefficient models for longitudinal data that can flexibly model three types of covariate effects: time-constant effects, time-varying effects, and covariate-varying effects, i.e., the covariate effects that depend on other possibly time-dependent exposure variables. First, we consider the model that assumes the time-varying effects are unspecified functions of time while the covariate-varying effects are parametric functions of an exposure variable specified up to a finite number of unknown parameters. The estimation procedures are developed using multivariate local linear smoothing and generalized weighted least squares estimation techniques. The asymptotic properties of the proposed estimators are established. The simulation studies show that the proposed methods have satisfactory finite sample performance. ACTG 244 clinical trial of HIV infected patients are applied to examine the effects of antiretroviral treatment switching before and after HIV developing the 215-mutation. Our analysis shows benefit of treatment switching before developing the 215-mutation. The proposed methods are also applied to the STEP study with MITT cases showing that they have broad applications in medical research.

  1. Linear, Parameter-Varying Control of Aeroservoelastic Systems

    NASA Astrophysics Data System (ADS)

    Moreno Chicunque, Claudia Patricia

    Modern aircraft designers are adopting light-weight, high-aspect ratio flexible wings to improve performance and reduce operation costs. A technical challenge associated with these designs is that the large deformations in flight of the wings lead to adverse interactions between the aircraft aerodynamic forces and structural forces. These adverse interactions produce excessive vibrations that can degrade flying qualities and may result in severe structural damages or catastrophic failure. This dissertation is focused on the application of multivariable robust control techniques for suppression of these adverse interactions in flexible aircraft. Here, the aircraft coupled nonlinear equations of motion are represented in the linear, parameter-varying framework. These equations account for the coupled aerodynamics, rigid body dynamics, and deformable body dynamics of the aircraft. Unfortunately, the inclusion of this coupled dynamics results in high-order models that increase the computational complexity of linear, parameter-varying control techniques. This dissertation addresses three key technologies for linear, parameter-varying control of flexible aircraft: (i) linear, parameter-varying model reduction; (ii) selection of actuators and sensors for vibration suppression; and (iii) design of linear, parameter-varying controllers for vibration suppression. All of these three technologies are applied to an experimental research platform located at the University of Minnesota. The objective of this dissertation is to provide to the flight control community with a set of design methodologies to safely exploit the benefits of light-weight flexible aircraft.

  2. Signature motifs of GDP polyribonucleotidyltransferase, a non-segmented negative strand RNA viral mRNA capping enzyme, domain in the L protein are required for covalent enzyme–pRNA intermediate formation

    PubMed Central

    Neubauer, Julie; Ogino, Minako; Green, Todd J.; Ogino, Tomoaki

    2016-01-01

    The unconventional mRNA capping enzyme (GDP polyribonucleotidyltransferase, PRNTase; block V) domain in RNA polymerase L proteins of non-segmented negative strand (NNS) RNA viruses (e.g. rabies, measles, Ebola) contains five collinear sequence elements, Rx(3)Wx(3–8)ΦxGxζx(P/A) (motif A; Φ, hydrophobic; ζ, hydrophilic), (Y/W)ΦGSxT (motif B), W (motif C), HR (motif D) and ζxxΦx(F/Y)QxxΦ (motif E). We performed site-directed mutagenesis of the L protein of vesicular stomatitis virus (VSV, a prototypic NNS RNA virus) to examine participation of these motifs in mRNA capping. Similar to the catalytic residues in motif D, G1100 in motif A, T1157 in motif B, W1188 in motif C, and F1269 and Q1270 in motif E were found to be essential or important for the PRNTase activity in the step of the covalent L-pRNA intermediate formation, but not for the GTPase activity that generates GDP (pRNA acceptor). Cap defective mutations in these residues induced termination of mRNA synthesis at position +40 followed by aberrant stop–start transcription, and abolished virus gene expression in host cells. These results suggest that the conserved motifs constitute the active site of the PRNTase domain and the L-pRNA intermediate formation followed by the cap formation is essential for successful synthesis of full-length mRNAs. PMID:26602696

  3. Signature motifs of GDP polyribonucleotidyltransferase, a non-segmented negative strand RNA viral mRNA capping enzyme, domain in the L protein are required for covalent enzyme-pRNA intermediate formation.

    PubMed

    Neubauer, Julie; Ogino, Minako; Green, Todd J; Ogino, Tomoaki

    2016-01-01

    The unconventional mRNA capping enzyme (GDP polyribonucleotidyltransferase, PRNTase; block V) domain in RNA polymerase L proteins of non-segmented negative strand (NNS) RNA viruses (e.g. rabies, measles, Ebola) contains five collinear sequence elements, Rx(3)Wx(3-8)ΦxGxζx(P/A) (motif A; Φ, hydrophobic; ζ, hydrophilic), (Y/W)ΦGSxT (motif B), W (motif C), HR (motif D) and ζxxΦx(F/Y)QxxΦ (motif E). We performed site-directed mutagenesis of the L protein of vesicular stomatitis virus (VSV, a prototypic NNS RNA virus) to examine participation of these motifs in mRNA capping. Similar to the catalytic residues in motif D, G1100 in motif A, T1157 in motif B, W1188 in motif C, and F1269 and Q1270 in motif E were found to be essential or important for the PRNTase activity in the step of the covalent L-pRNA intermediate formation, but not for the GTPase activity that generates GDP (pRNA acceptor). Cap defective mutations in these residues induced termination of mRNA synthesis at position +40 followed by aberrant stop-start transcription, and abolished virus gene expression in host cells. These results suggest that the conserved motifs constitute the active site of the PRNTase domain and the L-pRNA intermediate formation followed by the cap formation is essential for successful synthesis of full-length mRNAs. PMID:26602696

  4. Time-varying Reeb Graphs: A Topological Framework Supporting the Analysis of Continuous Time-varying Data

    SciTech Connect

    Mascarenhas, A

    2006-11-28

    I present time-varying Reeb graphs as a topological framework to support the analysis of continuous time-varying data. Such data is captured in many studies, including computational fluid dynamics, oceanography, medical imaging, and climate modeling, by measuring physical processes over time, or by modeling and simulating them on a computer. Analysis tools are applied to these data sets by scientists and engineers who seek to understand the underlying physical processes. A popular tool for analyzing scientific datasets is level sets, which are the points in space with a fixed data value s. Displaying level sets allows the user to study their geometry, their topological features such as connected components, handles, and voids, and to study the evolution of these features for varying s. For static data, the Reeb graph encodes the evolution of topological features and compactly represents topological information of all level sets. The Reeb graph essentially contracts each level set component to a point. It can be computed efficiently, and it has several uses: as a succinct summary of the data, as an interface to select meaningful level sets, as a data structure to accelerate level set extraction, and as a guide to remove noise. I extend these uses of Reeb graphs to time-varying data. I characterize the changes to Reeb graphs over time, and develop an algorithm that can maintain a Reeb graph data structure by tracking these changes over time. I store this sequence of Reeb graphs compactly, and call it a time-varying Reeb graph. I augment the time-varying Reeb graph with information that records the topology of level sets of all level values at all times, that maintains the correspondence of level set components over time, and that accelerates the extraction of level sets for a chosen level value and time. Scientific data sampled in space-time must be extended everywhere in this domain using an interpolant. A poor choice of interpolant can create degeneracies that are

  5. Efficient Estimation of Time-Varying Intrinsic and Reflex Stiffness

    PubMed Central

    Ludvig, Daniel; Perreault, Eric J.; Kearney, Robert E.

    2013-01-01

    Dynamic joint stiffness defines the dynamic relationship between the position of the joint and the torque acting about it; hence it is important in the control of movement and posture. Joint stiffness consists of two components: intrinsic stiffness and reflex stiffness. Measuring intrinsic and reflex torques directly is not possible, thus estimating intrinsic and reflex stiffness is challenging. A further complication is that both intrinsic and reflex stiffness vary with joint position and torque. Thus, the measurement of dynamic joint stiffness during movement requires a time-varying algorithm. Recently we described an algorithm to estimate time-varying intrinsic and reflex stiffness and demonstrated its application. This paper describes modifications to that algorithm that significantly improves the accuracy of the estimates it generates while increasing its computational efficiency by a factor of seven. PMID:22255247

  6. Time varying networks and the weakness of strong ties

    NASA Astrophysics Data System (ADS)

    Karsai, Márton; Perra, Nicola; Vespignani, Alessandro

    2014-02-01

    In most social and information systems the activity of agents generates rapidly evolving time-varying networks. The temporal variation in networks' connectivity patterns and the ongoing dynamic processes are usually coupled in ways that still challenge our mathematical or computational modelling. Here we analyse a mobile call dataset and find a simple statistical law that characterize the temporal evolution of users' egocentric networks. We encode this observation in a reinforcement process defining a time-varying network model that exhibits the emergence of strong and weak ties. We study the effect of time-varying and heterogeneous interactions on the classic rumour spreading model in both synthetic, and real-world networks. We observe that strong ties severely inhibit information diffusion by confining the spreading process among agents with recurrent communication patterns. This provides the counterintuitive evidence that strong ties may have a negative role in the spreading of information across networks.

  7. Time varying networks and the weakness of strong ties.

    PubMed

    Karsai, Márton; Perra, Nicola; Vespignani, Alessandro

    2014-01-01

    In most social and information systems the activity of agents generates rapidly evolving time-varying networks. The temporal variation in networks' connectivity patterns and the ongoing dynamic processes are usually coupled in ways that still challenge our mathematical or computational modelling. Here we analyse a mobile call dataset and find a simple statistical law that characterize the temporal evolution of users' egocentric networks. We encode this observation in a reinforcement process defining a time-varying network model that exhibits the emergence of strong and weak ties. We study the effect of time-varying and heterogeneous interactions on the classic rumour spreading model in both synthetic, and real-world networks. We observe that strong ties severely inhibit information diffusion by confining the spreading process among agents with recurrent communication patterns. This provides the counterintuitive evidence that strong ties may have a negative role in the spreading of information across networks. PMID:24510159

  8. Varying duty operation of air-cooled condenser units

    NASA Astrophysics Data System (ADS)

    Milman, O. O.; Kondratev, A. V.; Ptakhin, A. V.; Dunaev, S. N.; Kirjukhin, A. V.

    2016-05-01

    Results of experimental investigations of operation modes of air-cooled condensers (ACC) under design and varying duty conditions are presented. ACCs with varying cooling airflow rates under constant heat load and with constant cooling airflow under varying heat load are examined. Diagrams of heat transfer coefficients and condensation pressures on the heat load and cooling airflow are obtained. It is found that, if the relative heat load is in the range from 0.6 to 1.0 of the nominal value, the ACC heat transfer coefficient varies insignificantly, unlike that of the water-cooled surface condensers. The results of the determination of "zero points" are given, i.e., the attainable pressure in air-cooled condensing units (ACCU), if there is no heat load for several values of working water temperature at the input of water-jet ejectors and liquid ring vacuum pump. The results of the experimental determination of atmospheric air suction into the ACC vacuum system. The effect of additional air suctions in the steam pipe on ACCU characteristics is analyzed. The thermal mapping of ACC heat exchange surfaces from the cooling air inlet is carried out. The dependence of the inefficient heat exchange zone on the additional air suction into the ACC vacuum system is given. It is shown that, if there is no additional air suction into the ACC vacuum system, the inefficient heat exchange zone is not located at the bottom of the first pass tubes, and their portion adjacent to the bottom steam pipe works efficiently. Design procedures for the ACC varying duty of capacitors are presented, and their adequacy for the ACCU varying duty estimation is analyzed.

  9. Simple ABCD matrix treatment for transversely varying saturable gain.

    PubMed

    Grace, E J; New, G H; French, P M

    2001-11-15

    We have developed an ABCD matrix that, for the first time to our knowledge, accurately describes the transformation of a Gaussian beam by a medium with transversely varying saturable gain. In contrast with the conventional ABCD matrix, the newly developed matrix is shown to be in excellent agreement with a full beam propagation code over a wide parameter range. Accurate treatment of transversely varying saturable gain in laser resonators is important for the optimization of end-pumped lasers, particularly for efficient diode-pumped solid-state and Kerr-lens mode-locked systems. PMID:18059695

  10. Graduate Students' Pay and Benefits Vary Widely, Survey Shows

    ERIC Educational Resources Information Center

    June, Audrey Williams

    2008-01-01

    Graduate students face an array of choices when evaluating compensation-and-benefits packages that make comparisons difficult. A "Chronicle" survey shows that the offers to teaching assistants and research assistants vary widely. Some institutions cover 100 percent of graduate students' tuition, while others waive only a portion. It is possible to…

  11. Faculty's Degrees, Experience and Research Vary with Specialty.

    ERIC Educational Resources Information Center

    Fedler, Fred; Counts, Tim; Carey, Arlen; Santana, Maria Cristina

    1998-01-01

    Examines issues of professional experience, degrees, research, and productivity for journalism and mass communication faculty members, separating and comparing different specialties. Finds that requirements regarding academic degrees and research vary from specialty to specialty and that 53% of those teaching in advertising, radio/television, and…

  12. Varying Instructional Strategies to Accommodate Diverse Thinking Skills. Curriculum Concerns.

    ERIC Educational Resources Information Center

    Hillis, Michael R.; Eschenbach, John F. von

    1996-01-01

    Proposes using instructional games as a means of reaching students with varying learning styles. Describes several games involving problem solving, role playing, and simulations. The games incorporate aspects of Sternberg's theory that intelligence can be conceptualized as analytic, creative, or practical. (MJP)

  13. Decoupling in linear time-varying multivariable systems

    NASA Technical Reports Server (NTRS)

    Sankaran, V.

    1973-01-01

    The necessary and sufficient conditions for the decoupling of an m-input, m-output, linear time varying dynamical system by state variable feedback is described. The class of feedback matrices which decouple the system are illustrated. Systems which do not satisfy these results are described and systems with disturbances are considered. Some examples are illustrated to clarify the results.

  14. Time varying market efficiency of the GCC stock markets

    NASA Astrophysics Data System (ADS)

    Charfeddine, Lanouar; Khediri, Karim Ben

    2016-02-01

    This paper investigates the time-varying levels of weak-form market efficiency for the GCC stock markets over the period spanning from May 2005 to September 2013. We use two empirical approaches: (1) the generalized autoregressive conditional heteroscedasticity in mean (GARCH-M) model with state space time varying parameter (Kalman filter), and (2) a rolling technique sample test of the fractional long memory parameter d. As long memory estimation methods, we use the detrended fluctuation analysis (DFA) technique, the modified R/S statistic, the exact local whittle (ELW) and the feasible Exact Local Whittle (FELW) methods. Moreover, we use the Bai and Perron (1998, 2003) multiple structural breaks technique to test and date the time varying behavior of stock market efficiency. Empirical results show that GCC markets have different degrees of time-varying efficiency, and also have experiencing periods of efficiency improvement. Results also show evidence of structural breaks in all GCC markets. Moreover, we observe that the recent financial shocks such as Arab spring and subprime crises have a significant impact on the time path evolution of market efficiency.

  15. Time-Varying Affective Response for Humanoid Robots

    NASA Astrophysics Data System (ADS)

    Moshkina, Lilia; Arkin, Ronald C.; Lee, Jamee K.; Jung, Hyunryong

    This paper describes the design of a complex time-varying affective architecture. It is an expansion of the TAME architecture (traits, attitudes, moods, and emotions) as applied to humanoid robotics. It particular it is intended to promote effective human-robot interaction by conveying the robot’s affective state to the user in an easy-to-interpret manner.

  16. Additional Surgery after Breast-Conserving Surgery Varies Widely

    Cancer.gov

    A study published in the Feb. 1, 2012, issue of JAMA found that the number of women who have one or more additional surgeries to remove suspected residual tumor tissue (re-excisions) following breast-conserving surgery (BCS) for breast cancer varies widely across surgeons and hospitals.

  17. Electro-optic device having a laterally varying region

    NASA Technical Reports Server (NTRS)

    Andrews, James T. (Inventor); Ladany, Ivan (Inventor)

    1989-01-01

    A distributed feedback laser comprising a semiconductor body having a channel which varies in width in the laterial direction and is periodic in the longitudinal direction. When the laser is electrically excited constructive interference of reflected light gives rise to a stable single wavelength output due to the periodic variations in the channel.

  18. EVALUATION OF RZWQM UNDER VARYING IRRIGATION LEVELS IN EASTERN COLORADO

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The ability to predict and manage crop growth under varying available water conditions are of vital importance to the agricultural community since water is the most important limiting factor for agricultural productivity in semi-arid regions. This study evaluated an agricultural system model, the US...

  19. Explicit Analytical Solution of a Pendulum with Periodically Varying Length

    ERIC Educational Resources Information Center

    Yang, Tianzhi; Fang, Bo; Li, Song; Huang, Wenhu

    2010-01-01

    A pendulum with periodically varying length is an interesting physical system. It has been studied by some researchers using traditional perturbation methods (for example, the averaging method). But due to the limitation of the conventional perturbation methods, the solutions are not valid for long-term prediction of the pendulum. In this paper,…

  20. Adolescent Sexual Behaviors at Varying Levels of Substance Use Frequency

    ERIC Educational Resources Information Center

    Floyd, Leah J.; Latimer, William

    2010-01-01

    Combining substance use and sex compounds the risk of contracting sexually transmitted diseases, including HIV. However, the association between substance use and sexual behaviors may vary by substance and sexual behavior. The current study sought to examine the relationship between alcohol and marijuana use frequency and specific sexual…

  1. Frontal Neurons Modulate Memory Retrieval across Widely Varying Temporal Scales

    ERIC Educational Resources Information Center

    Zhang, Wen-Hua; Williams, Ziv M.

    2015-01-01

    Once a memory has formed, it is thought to undergo a gradual transition within the brain from short- to long-term storage. This putative process, however, also poses a unique problem to the memory system in that the same learned items must also be retrieved across broadly varying time scales. Here, we find that neurons in the ventrolateral…

  2. Neuronal Mechanisms and Transformations Encoding Time-Varying Signals.

    PubMed

    Petkov, Christopher I; Bendor, Daniel

    2016-08-17

    Sensation in natural environments requires the analysis of time-varying signals. While previous work has uncovered how a signal's temporal rate is represented by neurons in sensory cortex, in this issue of Neuron, new evidence from Gao et al. (2016) provides insights on the underlying mechanisms. PMID:27537481

  3. Plating on aluminum: influence of varying zinc immersion treatment times

    SciTech Connect

    Overturf, G.E. III; Dini, J.W.

    1983-07-18

    Quantitative adhesion data are presented for copper electrodeposits applied to 1100, 6061 and 7075 aluminum alloys. The substrates were prepared for plating by the zinc immersion process. In all cases, a double zinc immersion treatment was used and the time of immersion for the first and second zincate steps was varied. Ring shear tests were used to measure adhesion.

  4. Transforming Universities: National Conditions of Their Varied Organisational Actorhood

    ERIC Educational Resources Information Center

    Whitley, Richard

    2012-01-01

    Despite major changes in the governance of universities overtly intended to transform them into authoritatively integrated collectivities, the extent of their organisational actorhood remains quite limited and varied between OECD countries. This is because of inherent limitations to the managerial direction and control of research and teaching…

  5. Improved multimodal admittance method in varying cross section waveguides.

    PubMed

    Maurel, Agnès; Mercier, Jean-François; Pagneux, Vincent

    2014-04-01

    An improved version of the multimodal admittance method in acoustic waveguides with varying cross sections is presented. This method aims at a better convergence with respect to the number of transverse modes that are taken into account. It is based on an enriched modal expansion of the pressure: the N first modes are the local transverse modes and a supplementary (N+1)th mode, called boundary mode, is a well-chosen transverse function orthogonal to the N first modes. This expansion leads to the classical form of the coupled mode equations where the component of the boundary mode is of evanescent character. Under this form, the multimodal admittance method based on the Riccati equation on the admittance matrix (the Dirichlet-to-Neumann operator) is straightforwardly implemented. With this supplementary mode, in addition to the improvement of the convergence of the pressure field, results show a superconvergence of the scattered field outside of the varying cross sections region. PMID:24711716

  6. A Symmetric Time-Varying Cluster Rate of Descent Model

    NASA Technical Reports Server (NTRS)

    Ray, Eric S.

    2015-01-01

    A model of the time-varying rate of descent of the Orion vehicle was developed based on the observed correlation between canopy projected area and drag coefficient. This initial version of the model assumes cluster symmetry and only varies the vertical component of velocity. The cluster fly-out angle is modeled as a series of sine waves based on flight test data. The projected area of each canopy is synchronized with the primary fly-out angle mode. The sudden loss of projected area during canopy collisions is modeled at minimum fly-out angles, leading to brief increases in rate of descent. The cluster geometry is converted to drag coefficient using empirically derived constants. A more complete model is under development, which computes the aerodynamic response of each canopy to its local incidence angle.

  7. Cell response to silica gels with varying mechanical properties

    NASA Astrophysics Data System (ADS)

    Lefebvre, Molly Ann

    Sol-gel encapsulation has a variety of applications in biotechnology and medicine: creating biosensors, biocatalysts, and bioartificial organs. However, encapsulated cell viability is a major challenge. Consequently, interactions between cells and their 3D microenvironment were studied through rheological, metabolic activity, and extraction studies to aid in the development of new gel protocols. The cells were encapsulated in variations of three silica sol-gels with varying stiffness. It was hypothesized that the cell viability and the amount of extracted cells would depend on gel stiffness. For two gels, there was no apparent correlation between the gel stiffness and the cell viability and extracted cell quantity. These gels did strongly depend on the varying gel ingredient, polyethylene glycol. The third gel appeared to follow the hypothesized correlation, but it was not statistically significant. Finally, one gel had a significantly longer period of cell viability and higher quantity of extracted cells than the other gels.

  8. Effects of varying interfacial surface tension on macroscopic polymer lenses

    NASA Astrophysics Data System (ADS)

    Zimmerman, Charlotte; White, Mason; Baylor, Martha-Elizabeth

    2015-09-01

    We investigate macroscopic polymer lenses (0.5- to 2.5-cm diameter) fabricated by dropping hydrophobic photocurable resin onto the surface of various hydrophilic liquid surfaces. Due to the intermolecular forces along the interface between the two liquids, a lens shape is formed. We find that we can vary the lens geometry by changing the region over which the resin is allowed to spread and the surface tension of the substrate to produce lenses with theoretically determined focal lengths ranging from 5 to 25 mm. These effects are varied by changing the container width, substrate composition, and substrate temperature. We present data for five different variants, demonstrating that we can control the lens dimensions for polymer lens applications that require high surface quality.

  9. Chimera states in time-varying complex networks

    NASA Astrophysics Data System (ADS)

    Buscarino, Arturo; Frasca, Mattia; Gambuzza, Lucia Valentina; Hövel, Philipp

    2015-02-01

    Chimera states have been recently found in a variety of different coupling schemes and geometries. In most cases, the underlying coupling structure is considered to be static, while many realistic systems display significant temporal changes in the pattern of connectivity. In this work we investigate a time-varying network made of two coupled populations of Kuramoto oscillators, where the links between the two groups are considered to vary over time. As a main result we find that the network may support stable, breathing, and alternating chimera states. We also find that, when the rate of connectivity changes is fast, compared to the oscillator dynamics, the network may be described by a low-dimensional system of equations. Unlike in the static heterogeneous case, the onset of alternating chimera states is due to the presence of fluctuations, which may be induced either by the finite size of the network or by large switching times.

  10. Hemolymph drop impact outcomes on surfaces with varying wettability

    NASA Astrophysics Data System (ADS)

    Milionis, Athanasios; Ghokulla Krishnan, K.; Loth, Eric

    2015-08-01

    Insect fouling from coagulated hemolymph and exoskeleton parts is a major challenge in the aerospace industry for the next generation of aerodynamic surfaces, which will employ laminar flow that requires extremely smooth surfaces. However, the wetting physics and dynamics of hemolymph (insect blood) on surfaces are not well understood. The present study seeks to gain a fundamental insight on the effect of surface wetting characteristics and dynamics resulting from a hemolymph drop impact, the first such study. In particular, hemolymph drops extracted from Acheta domesticus were dispensed from a range of heights to vary the kinetic impact on surfaces, which had widely varying water wetting behavior (from superhydrophilic to superhydrophobic). The impact dynamics were investigated with high-speed imaging while the dried residues were studied with optical microscopy. It was found that a superhydrophobic surface (based on thermoplastic with silica nano-particles) was able to significantly reduce hemolymph drop spreading, and even provide complete rebound when impacting on inclined surfaces.

  11. Fault detection in reciprocating compressor valves under varying load conditions

    NASA Astrophysics Data System (ADS)

    Pichler, Kurt; Lughofer, Edwin; Pichler, Markus; Buchegger, Thomas; Klement, Erich Peter; Huschenbett, Matthias

    2016-03-01

    This paper presents a novel approach for detecting cracked or broken reciprocating compressor valves under varying load conditions. The main idea is that the time frequency representation of vibration measurement data will show typical patterns depending on the fault state. The problem is to detect these patterns reliably. For the detection task, we make a detour via the two dimensional autocorrelation. The autocorrelation emphasizes the patterns and reduces noise effects. This makes it easier to define appropriate features. After feature extraction, classification is done using logistic regression and support vector machines. The method's performance is validated by analyzing real world measurement data. The results will show a very high detection accuracy while keeping the false alarm rates at a very low level for different compressor loads, thus achieving a load-independent method. The proposed approach is, to our best knowledge, the first automated method for reciprocating compressor valve fault detection that can handle varying load conditions.

  12. Stabilising compensators for linear time-varying differential systems

    NASA Astrophysics Data System (ADS)

    Oberst, Ulrich

    2016-04-01

    In this paper, we describe a constructive test to decide whether a given linear time-varying (LTV) differential system admits a stabilising compensator for the control tasks of tracking, disturbance rejection or model matching and construct and parametrise all of them if at least one exists. In analogy to the linear time-invariant (LTI) case, the ring of stable rational functions, noncommutative in the LTV situation, and the Kučera-Youla parametrisation play prominent parts in the theory. We transfer Blumthaler's thesis from the LTI to the LTV case and sharpen, complete and simplify the corresponding results in the book 'Linear Time-Varying Systems' by Bourlès and Marinescu.

  13. Flexural wave cloaking via embedded cylinders with systematically varying thicknesses.

    PubMed

    Cho, Sungjin; Yang, Wonseok; Lee, Sinyeob; Park, Junhong

    2016-06-01

    Simulations of flexural wave cloaking from multiple scattering events that are achieved by embedded cylinders in a thin plate are performed. Minimization of refraction is performed using small surrounding cylinders with varying thickness in radial and angular directions, respectively. The thickness variations render the effective wave speed lower in the radial direction and higher in the angular direction compared to the speed in the surrounding media, which results in the cloaking effect. In order to verify the feasibility of this approach, 15 layers of cylinders are placed around the blocked area. The multiple-scattering method is used to predict wave propagations and to take the interactions between cylinders into account. The effects of the thickness variation on the cloaking performance are analyzed. The results demonstrate that minimal scattering is achieved when the area of interest is surrounded by the thickness-varying cylinders. PMID:27369157

  14. Scaling properties in time-varying networks with memory

    NASA Astrophysics Data System (ADS)

    Kim, Hyewon; Ha, Meesoon; Jeong, Hawoong

    2015-12-01

    The formation of network structure is mainly influenced by an individual node's activity and its memory, where activity can usually be interpreted as the individual inherent property and memory can be represented by the interaction strength between nodes. In our study, we define the activity through the appearance pattern in the time-aggregated network representation, and quantify the memory through the contact pattern of empirical temporal networks. To address the role of activity and memory in epidemics on time-varying networks, we propose temporal-pattern coarsening of activity-driven growing networks with memory. In particular, we focus on the relation between time-scale coarsening and spreading dynamics in the context of dynamic scaling and finite-size scaling. Finally, we discuss the universality issue of spreading dynamics on time-varying networks for various memory-causality tests.

  15. Carbon Isotope Discrimination Varies Genetically in C4 Species

    PubMed Central

    Hubick, Kerry T.; Hammer, Graeme L.; Farquhar, Graham D.; Wade, Len J.; von Caemmerer, Susanne; Henderson, Sally A.

    1990-01-01

    Carbon-isotope discrimination (Δ) is used to distinguish between different photosynthetic pathways. It has also been shown that variation in Δ occurs among varieties of C3 species, but not as yet, in C4 species. We now report that Δ also varies among genotypes of sorghum (Sorghum bicolor Moench), a C4 species. The discrimination in leaves of field-grown plants of 12 diverse genotypes of sorghum was measured and compared with their grain yields. Discrimination varied significantly among genotypes, and there was a significant negative correlation between grain yield and Δ. The variation in Δ may be caused by genetic differences in either leakiness of the bundle-sheath cells or by differences in the ratio of assimilation rate to stomatal conductance. At the leaf level, the former should be related to light-use efficiency of carbon fixation and the latter should be related to transpiration efficiency. Both could relate to the yield of the crop. PMID:16667310

  16. Epidemic spread in coupled populations with seasonally varying migration rates

    NASA Astrophysics Data System (ADS)

    Muzyczyn, Adam; Shaw, Leah B.

    2009-03-01

    The H5N1 strain of avian influenza has spread worldwide, and this spread may be due to seasonal migration of birds and mixing of birds from different regions in the wintering grounds. We studied a multipatch model for avian influenza with seasonally varying migration rates. The bird population was divided into two spatially distinct patches, or subpopulations. Within each patch, the disease followed the SIR (susceptible-infected-recovered) model for epidemic spread. Migration rates were varied periodically, with a net flux toward the breeding grounds during the spring and towards the wintering grounds during the fall. The case of two symmetric patches reduced to single-patch SIR dynamics. However, asymmetry in the birth and contact rates in the breeding grounds and wintering grounds led to bifurcations to longer period orbits and chaotic dynamics. We studied the bifurcation structure of the model and the phase relationships between outbreaks in the two patches.

  17. Means for ultrasonic testing when material properties vary

    DOEpatents

    Beller, Laurence S.

    1979-01-01

    A device is provided for maintaining constant sensitivity in an ultrasonic testing device, despite varying attenuation due to the properties of the material being tested. The device includes a sensor transducer for transmitting and receiving a test signal and a monitor transducer positioned so as to receive ultrasonic energy transmitted through the material to be tested. The received signal of the monitor transducer is utilized in analyzing data obtained from the sensor transducer.

  18. Varying the effective buoyancy of cells using magnetic force

    NASA Astrophysics Data System (ADS)

    Guevorkian, Karine; Valles, James M.

    2004-06-01

    We introduce a magnetic force buoyancy variation (MFBV) technique that employs intense inhomogeneous magnetic fields to vary the effective buoyancy of cells and other diamagnetic systems in solution. Nonswimming Paramecia have been suspended, forced to sediment and driven to rise in solution using MFBV. Details of their response to MFBV have been used to determine the magnetic susceptibility of a single Paramecium. The use of MFBV as a means by which to suspend cell cultures indefinitely is also described.

  19. Spatially-varying IIR filter banks for image coding

    NASA Technical Reports Server (NTRS)

    Chung, Wilson C.; Smith, Mark J. T.

    1992-01-01

    This paper reports on the application of spatially variant infinite impulse response (IIR) filter banks to subband image coding. The new filter bank is based on computationally efficient recursive polyphase decompositions that dynamically change in response to the input signal. In the absence of quantization, reconstruction can be made exact. However, by proper choice of an adaptation scheme, we show that subband image coding based on time varying filter banks can yield improvement over the use of conventional filter banks.

  20. The Effects of Varying Target Hardness on Ricochet Angle

    NASA Astrophysics Data System (ADS)

    Majid, M. S. Abdul; Birch, R. S.; Jais, M. I.

    2007-05-01

    This project is a study on ricochet characteristics off wooden targets when fired upon by 22 calibre bolt action rifle. A series of experimental testing has been carried out on three different woods chosen to give range of hardness, ranked from the hardest to the softest. Each wood was fired upon at varying angles of incidence until ricochet was observed. In general, the ricochet angle was found to decrease with an increase in target hardness.

  1. Method and apparatus of prefetching streams of varying prefetch depth

    DOEpatents

    Gara, Alan; Ohmacht, Martin; Salapura, Valentina; Sugavanam, Krishnan; Hoenicke, Dirk

    2012-01-24

    Method and apparatus of prefetching streams of varying prefetch depth dynamically changes the depth of prefetching so that the number of multiple streams as well as the hit rate of a single stream are optimized. The method and apparatus in one aspect monitor a plurality of load requests from a processing unit for data in a prefetch buffer, determine an access pattern associated with the plurality of load requests and adjust a prefetch depth according to the access pattern.

  2. Varied morphology carbon nanotubes and method for their manufacture

    DOEpatents

    Li, Wenzhi; Wen, Jian Guo; Ren, Zhi Feng

    2007-01-02

    The present invention describes the preparation of carbon nanotubes of varied morphology, catalyst materials for their synthesis. The present invention also describes reactor apparatus and methods of optimizing and controlling process parameters for the manufacture carbon nanotubes with pre-determined morphologies in relatively high purity and in high yields. In particular, the present invention provides methods for the preparation of non-aligned carbon nanotubes with controllable morphologies, catalyst materials and methods for their manufacture.

  3. Interacting varying ghost dark energy models in general relativity

    NASA Astrophysics Data System (ADS)

    Khurshudyan, Martiros; Khurshudyan, Amalya; Myrzakulov, Ratbay

    2015-06-01

    Motivated by recent developments in Cosmology we would like to consider an extension of the Ghost DE which we will name as varying Ghost DE. Ghost DE like other models was introduced recently as a possible way to explain accelerated expansion of the Universe. For the phenomenological origin of the varying Ghost dark energy in our Universe we can suggest an existence of some unknown dynamics between the Ghost Dark energy and a fluid which evaporated completely making sense of the proposed effect. Moreover, we assume that this was in the epochs and scales which are unreachable by present-day experiments, like in very early Universe. In this study we will investigate the model for cosmological validity. We will apply observational and causality constraints to illuminate physically correct behavior of the model from the phenomenological one. We saw that an interaction between the varying Ghost DE and cold DM (CDM) also provides a solution to the cosmological coincidence problem. And we found that the Ghost DE behaves as a fluid-like matter in early Universe.

  4. Identifying structures of continuously-varying weighted networks

    PubMed Central

    Mei, Guofeng; Wu, Xiaoqun; Chen, Guanrong; Lu, Jun-an

    2016-01-01

    Identifying network structures from dynamical observations is a fundamental problem currently pervading scientific research on complex systems, as understanding and modeling the structure of a complex network will lead to greater knowledge of its evolutionary mechanisms and to a better understanding of its functional behaviors. Usually, one needs to identify a network’s structure through a limited number of observations. Particularly, couplings of many real-world networks are sparse and continuously varying with time. In this study, a new framework is developed via optimization for identifying structures of continuously-varying weighted networks formed by sparsely-connected dynamical systems. Furthermore, a regularization technique is employed to increase the numerical stability of the parameter estimation algorithm. Three numerical examples are provided to illustrate the feasibility and effectiveness of the proposed identification method. In comparison with other existing techniques, the main advantages of our method include its ability to identify structures of continuously-varying weighted networks in addition to static ones, as well as its requirement of a relatively small number of observations. The proposed method has a potential applicability to a variety of evolving complex dynamical networks. PMID:27241956

  5. Image Cross-Correlation Analysis of Time Varying Flows.

    PubMed

    Marquezin, Cassia A; Ceffa, Nicolò G; Cotelli, Franco; Collini, Maddalena; Sironi, Laura; Chirico, Giuseppe

    2016-07-19

    In vivo studies of blood circulation pathologies have great medical relevance and need methods for the characterization of time varying flows at high spatial and time resolution in small animal models. We test here the efficacy of the combination of image correlation techniques and single plane illumination microscopy (SPIM) in characterizing time varying flows in vitro and in vivo. As indicated by numerical simulations and by in vitro experiments on straight capillaries, the complex analytical form of the cross-correlation function for SPIM detection can be simplified, in conditions of interest for hemodynamics, to a superposition of Gaussian components, easily amenable to the analysis of variable flows. The possibility to select a wide field of view with a good spatial resolution along the collection optical axis and to compute the cross-correlation between regions of interest at varying distances on a single time stack of images allows one to single out periodic flow components from spurious peaks on the cross-correlation functions and to infer the duration of each flow component. We apply this cross-correlation analysis to the blood flow in Zebrafish embryos at 4 days after fertilization, measuring the average speed and the duration of the systolic and diastolic phases. PMID:27348197

  6. Efficient Encoding and Rendering of Time-Varying Volume Data

    NASA Technical Reports Server (NTRS)

    Ma, Kwan-Liu; Smith, Diann; Shih, Ming-Yun; Shen, Han-Wei

    1998-01-01

    Visualization of time-varying volumetric data sets, which may be obtained from numerical simulations or sensing instruments, provides scientists insights into the detailed dynamics of the phenomenon under study. This paper describes a coherent solution based on quantization, coupled with octree and difference encoding for visualizing time-varying volumetric data. Quantization is used to attain voxel-level compression and may have a significant influence on the performance of the subsequent encoding and visualization steps. Octree encoding is used for spatial domain compression, and difference encoding for temporal domain compression. In essence, neighboring voxels may be fused into macro voxels if they have similar values, and subtrees at consecutive time steps may be merged if they are identical. The software rendering process is tailored according to the tree structures and the volume visualization process. With the tree representation, selective rendering may be performed very efficiently. Additionally, the I/O costs are reduced. With these combined savings, a higher level of user interactivity is achieved. We have studied a variety of time-varying volume datasets, performed encoding based on data statistics, and optimized the rendering calculations wherever possible. Preliminary tests on workstations have shown in many cases tremendous reduction by as high as 90% in both storage space and inter-frame delay.

  7. Delivery of continuously-varying stimuli using channelrhodopsin-2

    PubMed Central

    Tchumatchenko, Tatjana; Newman, Jonathan P.; Fong, Ming-fai; Potter, Steve M.

    2013-01-01

    To study sensory processing, stimuli are delivered to the sensory organs of animals and evoked neural activity is recorded downstream. However, noise and uncontrolled modulatory input can interfere with repeatable delivery of sensory stimuli to higher brain regions. Here we show how channelrhodopsin-2 (ChR2) can be used to deliver continuous, subthreshold, time-varying currents to neurons at any point along the sensory-motor pathway. To do this, we first deduce the frequency response function of ChR2 using a Markov model of channel kinetics. We then confirm ChR2's frequency response characteristics using continuously-varying optical stimulation of neurons that express one of three ChR2 variants. We find that wild-type ChR2 and the E123T/H134R mutant (“ChETA”) can pass continuously-varying subthreshold stimuli with frequencies up to ~70 Hz. Additionally, we find that wild-type ChR2 exhibits a strong resonance at ~6–10 Hz. Together, these results indicate that ChR2-derived optogenetic tools are useful for delivering highly repeatable artificial stimuli that mimic in vivo synaptic bombardment. PMID:24367294

  8. Identifying structures of continuously-varying weighted networks

    NASA Astrophysics Data System (ADS)

    Mei, Guofeng; Wu, Xiaoqun; Chen, Guanrong; Lu, Jun-An

    2016-05-01

    Identifying network structures from dynamical observations is a fundamental problem currently pervading scientific research on complex systems, as understanding and modeling the structure of a complex network will lead to greater knowledge of its evolutionary mechanisms and to a better understanding of its functional behaviors. Usually, one needs to identify a network’s structure through a limited number of observations. Particularly, couplings of many real-world networks are sparse and continuously varying with time. In this study, a new framework is developed via optimization for identifying structures of continuously-varying weighted networks formed by sparsely-connected dynamical systems. Furthermore, a regularization technique is employed to increase the numerical stability of the parameter estimation algorithm. Three numerical examples are provided to illustrate the feasibility and effectiveness of the proposed identification method. In comparison with other existing techniques, the main advantages of our method include its ability to identify structures of continuously-varying weighted networks in addition to static ones, as well as its requirement of a relatively small number of observations. The proposed method has a potential applicability to a variety of evolving complex dynamical networks.

  9. Mass-varying massive gravity with k-essence

    NASA Astrophysics Data System (ADS)

    Tannukij, Lunchakorn; Wongjun, Pitayuth

    2016-01-01

    For a large class of mass-varying massive-gravity models, the graviton mass cannot provide the late-time cosmic expansion of the universe due to its vanishing at late time. In this work, we propose a new class of mass-varying massive gravity models, in which the graviton mass varies according to a kinetic term of a k-essence field. By using a more general form of the fiducial metric, we found a solution such that a non-vanishing graviton mass can drive the accelerated expansion of the universe at late time. We also perform dynamical analyses of such a model and find that without introducing the k-essence Lagrangian, the graviton mass can be responsible for both dark contents of the universe, namely dark energy, which drives the accelerated expansion of the universe, and non-relativistic matter, which plays the role of dark matter. Moreover, by including the k-essence Lagrangian, we find that it is possible to alleviate the so-called cosmic coincidence problem.

  10. Modeling Time Varying Effects with Generalized and Unsynchronized Longitudinal Data

    PubMed Central

    Şentürk, Damla; Dalrymple, Lorien S.; Mohammed, Sandra M.; Kaysen, George A.; Nguyen, Danh V.

    2013-01-01

    Summary We propose novel estimation approaches for generalized varying coefficient models that are tailored for unsynchronized, irregular and infrequent longitudinal designs/data. Unsynchronized longitudinal data refers to the time-dependent response and covariate measurements for each individual measured at distinct time points. The proposed methods are motivated by data from the Comprehensive Dialysis Study (CDS). We model the potential age-varying association between infection-related hospitalization status and the inflammatory marker, C-reactive protein (CRP), within the first two years from initiation of dialysis. Traditional longitudinal modeling cannot directly be applied to unsynchronized data and no method exists to estimate time- or age-varying effects for generalized outcomes (e.g., binary or count data) to date. In addition, through the analysis of the CDS data and simulation studies, we show that preprocessing steps, such as binning, needed to synchronize data to apply traditional modeling can lead to significant loss of information in this context. In contrast, the proposed approaches discard no observation; they exploit the fact that although there is little information in a single subject trajectory due to irregularity and infrequency, the moments of the underlying processes can be accurately and efficiently recovered by pooling information from all subjects using functional data analysis. Subject-specific mean response trajectory predictions are derived and finite sample properties of the estimators are studied. PMID:23335196

  11. A varying polytropic gas universe and phase space analysis

    NASA Astrophysics Data System (ADS)

    Khurshudyan, M.

    2016-05-01

    In this paper, we will consider a phenomenological model of a dark fluid that is able to explain an accelerated expansion of our low redshift universe and the phase transition to this accelerated expanding universe. Recent developments in modern cosmology towards understanding of the accelerated expansion of the large scale universe involve various scenarios and approaches. Among these approaches, one of well-known and accepted practice is modeling of the content of our universe via dark fluid. There are various models of dark energy fluid actively studied in recent literature and polytropic gas is among them. In this work, we will consider a varying polytropic gas which is a phenomenological modification of polytropic gas. Our model of varying polytropic dark fluid has been constructed to analogue to a varying Chaplygin gas actively discussed in the literature. We will consider interacting models, where dark matter is a pressureless fluid, to have a comprehensive picture. Phase space analysis is an elegant mathematical tool to earn general understanding of large scale universe and easily see an existence of a solution to cosmological coincidence problem. Imposing some constraints on parameters of the models, we found late time attractors for each case analytically. Cosmological consequences for the obtained late time attractors are discussed.

  12. Modeling maximum daily temperature using a varying coefficient regression model

    NASA Astrophysics Data System (ADS)

    Li, Han; Deng, Xinwei; Kim, Dong-Yun; Smith, Eric P.

    2014-04-01

    Relationships between stream water and air temperatures are often modeled using linear or nonlinear regression methods. Despite a strong relationship between water and air temperatures and a variety of models that are effective for data summarized on a weekly basis, such models did not yield consistently good predictions for summaries such as daily maximum temperature. A good predictive model for daily maximum temperature is required because daily maximum temperature is an important measure for predicting survival of temperature sensitive fish. To appropriately model the strong relationship between water and air temperatures at a daily time step, it is important to incorporate information related to the time of the year into the modeling. In this work, a time-varying coefficient model is used to study the relationship between air temperature and water temperature. The time-varying coefficient model enables dynamic modeling of the relationship, and can be used to understand how the air-water temperature relationship varies over time. The proposed model is applied to 10 streams in Maryland, West Virginia, Virginia, North Carolina, and Georgia using daily maximum temperatures. It provides a better fit and better predictions than those produced by a simple linear regression model or a nonlinear logistic model.

  13. Identifying structures of continuously-varying weighted networks.

    PubMed

    Mei, Guofeng; Wu, Xiaoqun; Chen, Guanrong; Lu, Jun-An

    2016-01-01

    Identifying network structures from dynamical observations is a fundamental problem currently pervading scientific research on complex systems, as understanding and modeling the structure of a complex network will lead to greater knowledge of its evolutionary mechanisms and to a better understanding of its functional behaviors. Usually, one needs to identify a network's structure through a limited number of observations. Particularly, couplings of many real-world networks are sparse and continuously varying with time. In this study, a new framework is developed via optimization for identifying structures of continuously-varying weighted networks formed by sparsely-connected dynamical systems. Furthermore, a regularization technique is employed to increase the numerical stability of the parameter estimation algorithm. Three numerical examples are provided to illustrate the feasibility and effectiveness of the proposed identification method. In comparison with other existing techniques, the main advantages of our method include its ability to identify structures of continuously-varying weighted networks in addition to static ones, as well as its requirement of a relatively small number of observations. The proposed method has a potential applicability to a variety of evolving complex dynamical networks. PMID:27241956

  14. Simulations of Dynamical Friction Including Spatially-Varying Magnetic Fields

    SciTech Connect

    Bell, G. I.; Bruhwiler, D. L.; Busby, R.; Abell, D. T.; Messmer, P.; Veitzer, S.; Litvinenko, V. N.; Cary, J. R.

    2006-03-20

    A proposed luminosity upgrade to the Relativistic Heavy Ion Collider (RHIC) includes a novel electron cooling section, which would use {approx}55 MeV electrons to cool fully-ionized 100 GeV/nucleon gold ions. We consider the dynamical friction force exerted on individual ions due to a relevant electron distribution. The electrons may be focussed by a strong solenoid field, with sensitive dependence on errors, or by a wiggler field. In the rest frame of the relativistic co-propagating electron and ion beams, where the friction force can be simulated for nonrelativistic motion and electrostatic fields, the Lorentz transform of these spatially-varying magnetic fields includes strong, rapidly-varying electric fields. Previous friction force simulations for unmagnetized electrons or error-free solenoids used a 4th-order Hermite algorithm, which is not well-suited for the inclusion of strong, rapidly-varying external fields. We present here a new algorithm for friction force simulations, using an exact two-body collision model to accurately resolve close interactions between electron/ion pairs. This field-free binary-collision model is combined with a modified Boris push, using an operator-splitting approach, to include the effects of external fields. The algorithm has been implemented in the VORPAL code and successfully benchmarked.

  15. Neural processing of reward magnitude under varying attentional demands.

    PubMed

    Stoppel, Christian Michael; Boehler, Carsten Nicolas; Strumpf, Hendrik; Heinze, Hans-Jochen; Hopf, Jens-Max; Schoenfeld, Mircea Ariel

    2011-04-01

    Central to the organization of behavior is the ability to represent the magnitude of a prospective reward and the costs related to obtaining it. Therein, reward-related neural activations are discounted in dependence of the effort required to resolve a given task. Varying attentional demands of the task might however affect reward-related neural activations. Here we employed fMRI to investigate the neural representation of expected values during a monetary incentive delay task with varying attentional demands. Following a cue, indicating at the same time the difficulty (hard/easy) and the reward magnitude (high/low) of the upcoming trial, subjects performed an attention task and subsequently received feedback about their monetary reward. Consistent with previous results, activity in anterior-cingulate, insular/orbitofrontal and mesolimbic regions co-varied with the anticipated reward-magnitude, but also with the attentional requirements of the task. These activations occurred contingent on action-execution and resembled the response time pattern of the subjects. In contrast, cue-related activations, signaling the forthcoming task-requirements, were only observed within attentional control structures. These results suggest that anticipated reward-magnitude and task-related attentional demands are concurrently processed in partially overlapping neural networks of anterior-cingulate, insular/orbitofrontal, and mesolimbic regions. PMID:21295019

  16. Deletion of plant-specific sugar residues in plant N-glycans by repression of GDP-D-mannose 4,6-dehydratase and β-1,2-xylosyltransferase genes.

    PubMed

    Matsuo, Kouki; Kagaya, Uiko; Itchoda, Noriko; Tabayashi, Noriko; Matsumura, Takeshi

    2014-10-01

    Production of pharmaceutical glycoproteins, such as therapeutic antibodies and cytokines, in plants has many advantages in safety and reduced costs. However, plant-made glycoproteins have N-glycans with plant-specific sugar residues (core β-1,2-xylose and α-1,3-fucose) and a Lewis a (Le(a)) epitope, Galβ(1-3)[Fucα(1-4)]GlcNAc. Because it is likely that these sugar residues and glycan structures are immunogenic, many attempts have been made to delete them. Previously, we reported the simultaneous deletion of the plant-specific core α-1,3-fucose and α-1,4-fucose residues in Le(a) epitopes by repressing the GDP-D-mannose 4,6-dehydratase (GMD) gene, which is associated with GDP-L-fucose biosynthesis, in Nicotiana benthamiana plants (rGMD plants, renamed to ΔGMD plants) (Matsuo and Matsumura, Plant Biotechnol. J., 9, 264-281, 2011). In the present study, we generated a core β-1,2-xylose residue-repressed transgenic N. benthamiana plant by co-suppression of β-1,2-xylosyltransferase (ΔXylT plant). By crossing ΔGMD and ΔXylT plants, we successfully generated plants in which plant-specific sugar residues were repressed (ΔGMDΔXylT plants). The proportion of N-glycans with deleted plant-specific sugar residues found in total soluble protein from ΔGMDΔXylT plants increased by 82.41%. Recombinant mouse granulocyte/macrophage-colony stimulating factor (mGM-CSF) and human monoclonal immunoglobulin G (hIgG) harboring N-glycans with deleted plant-specific sugar residues were successfully produced in ΔGMDΔXylT plants. Simultaneous repression of the GMD and XylT genes in N. benthamiana is thus very useful for deleting plant-specific sugar residues. PMID:24794851

  17. Legionella pneumophila Seropositivity-Associated Factors in Latvian Blood Donors

    PubMed Central

    Valciņa, Olga; Pūle, Daina; Lucenko, Irina; Krastiņa, Dita; Šteingolde, Žanete; Krūmiņa, Angelika; Bērziņš, Aivars

    2015-01-01

    Continuous environmental exposure of humans to Legionella may induce immune responses and generation of antibodies. The aim of this study was to investigate the seroprevalence of Legionella pneumophila serogroups (SG) 1–6 in the general healthy population and identify the associated host-related and environmental risk factors. L. pneumophila SG 1–6 seroprevalence among a total of 2007 blood samples collected from healthy donors was 4.8%. Seroprevalence was higher in women (5.9%) than men (3.3%) and in areas with a larger number of inhabitants, ranging from 3.5% in rural regions to 6.8% in the capital, Riga. Blood samples from inhabitants of apartment buildings tested positive for L. pneumophila in more cases (5.8%) compared to those from inhabitants of single-family homes (2.7%). Residents of buildings with a municipal hot water supply system were more likely to be seropositive for L. pneumophila (OR = 3.16, 95% CI 1.26–7.91). Previous episodes of fever were additionally identified as a risk factor (OR = 2.42, 95% CI 1.43–4.1). In conclusion, centralized hot water supply, female gender and previous episodes of fever were determined as the main factors associated with L. pneumophila seropositivity in our study population. PMID:26703696

  18. Analysis of Yearly Traffic Fluctuation on Latvian Highways

    NASA Astrophysics Data System (ADS)

    Freimanis, A.; Paeglı¯tis, A.

    2015-11-01

    Average annual daily traffic and average annual truck traffic are two most used metrics for road management decisions. They are calculated from data gathered by continuous counting stations embedded in road pavement, manual counting sessions or mobile counting devices. Last two usually do not last longer than a couple of weeks so the information gathered is influenced by yearly traffic fluctuations. Data containing a total of 8,186,871 vehicles or 1989 days from 4 WIM stations installed on highways in Latvia were used in this study. Each of the files was supposed to contain data from only 1 day and additional data were deleted. No other data cleaning steps were performed, which increased the number of vehicles as counting systems sometimes split vehicles into two. Weekly traffic and weekly truck traffic was normalized against respective average values. Each weekly value was then plotted against its number in a year for better visual perception. Weekly traffic amplitudes were used to assess differences between different locations and standard deviations for fluctuation comparison of truck and regular traffic at the same location. Results show that truck traffic fluctuates more than regular traffic during a year, especially around holidays. Differences between counting locations were larger for regular traffic than truck traffic. These results show that average annual daily traffic could be influenced more if short term counting results are adjusted by factors derived from unsuitable continuous counting stations, but truck traffic is more influenced by the time of year in which counting is done.

  19. Spatially Varying Coefficient Inequalities: Evaluating How the Impact of Patient Characteristics on Breast Cancer Survival Varies by Location

    PubMed Central

    Hsieh, Jeff Ching-Fu; Cramb, Susanna M.; McGree, James M.; Dunn, Nathan A. M.; Baade, Peter D.; Mengersen, Kerrie L.

    2016-01-01

    An increasing number of studies have identified spatial differences in breast cancer survival. However little is known about whether the structure and dynamics of this spatial inequality are consistent across a region. This study aims to evaluate the spatially varying nature of predictors of spatial inequality in relative survival for women diagnosed with breast cancer across Queensland, Australia. All Queensland women aged less than 90 years diagnosed with invasive breast cancer from 1997 to 2007 and followed up to the end of 2008 were extracted from linked Queensland Cancer Registry and BreastScreen Queensland data. Bayesian relative survival models were fitted using various model structures (a spatial regression model, a varying coefficient model and a finite mixture of regressions model) to evaluate the relative excess risk of breast cancer, with the use of Markov chain Monte Carlo computation. The spatially varying coefficient models revealed that some covariate effects may not be constant across the geographic regions of the study. The overall spatial patterns showed lower survival among women living in more remote areas, and higher survival among the urbanised south-east corner. Notwithstanding this, the spatial survival pattern for younger women contrasted with that for older women as well as single women. This complex spatial interplay may be indicative of different factors impacting on survival patterns for these women. PMID:27149274

  20. Constraints on global fire activity vary across a resource gradient.

    PubMed

    Krawchuk, Meg A; Moritz, Max A

    2011-01-01

    We provide an empirical, global test of the varying constraints hypothesis, which predicts systematic heterogeneity in the relative importance of biomass resources to burn and atmospheric conditions suitable to burning (weather/climate) across a spatial gradient of long-term resource availability. Analyses were based on relationships between monthly global wildfire activity, soil moisture, and mid-tropospheric circulation data from 2001 to 2007, synthesized across a gradient of long-term averages in resources (net primary productivity), annual temperature, and terrestrial biome. We demonstrate support for the varying constraints hypothesis, showing that, while key biophysical factors must coincide for wildfires to occur, the relative influence of resources to burn and moisture/weather conditions on fire activity shows predictable spatial patterns. In areas where resources are always available for burning during the fire season, such as subtropical/tropical biomes with mid-high annual long-term net primary productivity, fuel moisture conditions exert their strongest constraint on fire activity. In areas where resources are more limiting or variable, such as deserts, xeric shrublands, or grasslands/savannas, fuel moisture has a diminished constraint on wildfire, and metrics indicating availability of burnable fuels produced during the antecedent wet growing seasons reflect a more pronounced constraint on wildfire. This macro-scaled evidence for spatially varying constraints provides a synthesis with studies performed at local and regional scales, enhances our understanding of fire as a global process, and indicates how sensitivity to future changes in temperature and precipitation may differ across the world. PMID:21560682

  1. Size-varying small target detection for infrared image processing

    NASA Astrophysics Data System (ADS)

    Li, Miao; Zhu, Ran; Long, Yunli; An, Wei; Zhou, Yiyu

    2015-10-01

    IRST (Infrared Search and Track) has been applied to many military or civil fields such as precise guidance, aerospace, early warning. As a key technique, small target detection based on infrared image plays an important role. However, infrared targets have their own characteristics, such as target size variation, which make the detection work quite difficult. In practical application, the target size may vary due to many reasons, such as optic angle of sensors, imaging distance, environment and so on. For conventional detection methods, it is difficult to detect such size-varying targets, especially when the backgrounds have strong clutters. This paper presents a novel method to detect size-varying infrared targets in a cluttered background. It is easy to find that the target region is salient in infrared images. It means that target region have a signature of discontinuity with its neighboring regions and concentrates in a relatively small region, which can be considered as a homogeneous compact region, and the background is consistent with its neighboring regions. Motivated by the saliency feature and gradient feature, we introduce minimum target intensity (MTI) to measure the dissimilarity between different scales, and use mean gradient to restrict the target scale in a reasonable range. They are integrated to be multiscale MTI filter. The proposed detection method is designed based on multiscale MTI filter. Firstly, salient region is got by morphological low-pass filtering, where the potential target exists in. Secondly, the candidate target regions are extracted by multiscale minimum target intensity filter, which can effectively give the optimal target size. At last, signal-to-clutter ratio (SCR) is used to segment targets, which is computed based on optimal scale of candidate targets. The experimental results indicate that the proposed method can achieve both higher detection precision and robustness in complex background.

  2. Bayesian Variable Selection for Multivariate Spatially-Varying Coefficient Regression

    PubMed Central

    Reich, Brian J.; Fuentes, Montserrat; Herring, Amy H.; Evenson, Kelly R.

    2009-01-01

    Summary Physical activity has many well-documented health benefits for cardiovascular fitness and weight control. For pregnant women, the American College of Obstetricians and Gynecologists currently recommends 30 minutes of moderate exercise on most, if not all, days; however, very few pregnant women achieve this level of activity. Traditionally, studies have focused on examining individual or interpersonal factors to identify predictors of physical activity. There is a renewed interest in whether characteristics of the physical environment in which we live and work may also influence physical activity levels. We consider one of the first studies of pregnant women that examines the impact of characteristics of the built environment on physical activity levels. Using a socioecologic framework, we study the associations between physical activity and several factors including personal characteristics, meteorological/air quality variables, and neighborhood characteristics for pregnant women in four counties of North Carolina. We simultaneously analyze six types of physical activity and investigate cross-dependencies between these activity types. Exploratory analysis suggests that the associations are different in different regions. Therefore we use a multivariate regression model with spatially-varying regression coefficients. This model includes a regression parameter for each covariate at each spatial location. For our data with many predictors, some form of dimension reduction is clearly needed. We introduce a Bayesian variable selection procedure to identify subsets of important variables. Our stochastic search algorithm determines the probabilities that each covariate’s effect is null, non-null but constant across space, and spatially-varying. We found that individual level covariates had a greater influence on women’s activity levels than neighborhood environmental characteristics, and some individual level covariates had spatially-varying associations with

  3. Identification and robust control of linear parameter-varying systems

    NASA Astrophysics Data System (ADS)

    Lee, Lawton Hubert

    This dissertation deals with linear parameter-varying (LPV) systems: linear dynamic systems that depend on time-varying parameters. These systems appear in gain scheduling problems, and much recent research has been devoted to their prospective usefulness for systematic gain scheduling. We primarily focus on robust control of uncertain LPV systems and identification of LPV systems that are modelable as linear-fractional transformations (LFTs). Using parameter-dependent quadratic Lyapunov functions, linear matrix inequalities (LMIs), and scaled small-gain arguments, we define notions of stability and induced-{cal L}sb2 performance for uncertain LPV systems whose parameters and rates of parameter variation satisfy given bounds. The performance criterion involves integral quadratic constraints and implies naturally parameter-dependent induced-{cal L}sb2 norm bounds. We formulate and solve an {cal H}sb{infty}-like control problem for an LPV plant with measurable parameters and an "Output/State Feedback" structure: the feedback outputs include some noiselessly measured states. Necessary and sufficient solvability conditions reduce to LMIs that can be solved approximately using finite-dimensional convex programming. Reduced-order LPV controllers are constructed from the LMI solutions. A D-K iteration-like procedure provides robustness to structured, time-varying, parametric uncertainty. The design method is applied to a motivating example: flight control for the F-16 VISTA throughout its subsonic flight envelope. Parameter-dependent weights and {cal H}sb{infty} design principles describe the performance objectives. Closed-loop responses exhibited by nonlinear simulations indicate satisfactory flying qualities. Identification of linear-fractional LPV systems is treated using maximum-likelihood parameter estimation. Computing the gradient and Hessian of a maximum-likelihood cost function reduces to simulating one LPV filter per identified parameter. We use nonlinear

  4. Magnetoresistance of polycrystalline gadolinium with varying grain size

    SciTech Connect

    Chakravorty, Manotosh Raychaudhuri, A. K.

    2015-01-21

    In this paper, we report a study of evolution of low field magnetoresistance (MR) of Gadolinium as the grain size in the sample is changed from few microns (∼4 μm) to the nanoscopic regime (∼35 nm). The low field MR has a clear effect on varying grain size. In large grain sample (few μm), the magnetic domains are controlled by local anisotropy field determined mainly by the magnetocrystalline anisotropy. The low field MR clearly reflects the temperature dependence of the magnetocrystalline anisotropy. For decreasing gain size, the contribution of spin disorder at the grain boundary increases and enhances the local anisotropy field.

  5. Synthesis and Photochromic Properties of Configurationally Varied Azobenzene Glycosides

    PubMed Central

    Chandrasekaran, Vijayanand; Johannes, Eugen; Kobarg, Hauke; Sönnichsen, Frank D; Lindhorst, Thisbe K

    2014-01-01

    Spatial orientation of carbohydrates is a meaningful parameter in carbohydrate recognition processes. To vary orientation of sugars with temporal and spatial resolution, photosensitive glycoconjugates with favorable photochromic properties appear to be opportune. Here, a series of azobenzene glycosides were synthesized, employing glycoside synthesis and Mills reaction, to allow “switching” of carbohydrate orientation by reversible E/Z isomerization of the azobenzene N=N double bond. Their photochromic properties were tested and effects of azobenzene substitution as well as the effect of anomeric configuration and the orientation of the sugars 2-hydroxy group were evaluated. PMID:25050228

  6. Downdating a time-varying square root information filter

    NASA Technical Reports Server (NTRS)

    Muellerschoen, Ronald J.

    1990-01-01

    A new method to efficiently downdate an estimate and covariance generated by a discrete time Square Root Information Filter (SRIF) is presented. The method combines the QR factor downdating algorithm of Gill and the decentralized SRIF algorithm of Bierman. Efficient removal of either measurements or a priori information is possible without loss of numerical integrity. Moreover, the method includes features for detecting potential numerical degradation. Performance on a 300 parameter system with 5800 data points shows that the method can be used in real time and hence is a promising tool for interactive data analysis. Additionally, updating a time-varying SRIF filter with either additional measurements or a priori information proceeds analogously.

  7. Fast-varying envelope transient equation for supercontinuum generation

    NASA Astrophysics Data System (ADS)

    Huang, Jing

    2016-01-01

    The transient nonlinear Schrodinger equation in which the frequency is a function of time is established to describe the fast-varying field in the process of supercontinuum generation. It is solved with two methods and validated by comparing its simulation results with those of reported experiments. Based on the simulations of this extended equation, it is also demonstrated that the second-order differential of the field to longitude (z) can be ignored in the supercontinuum generation, and the additive item caused by the relationship between frequency and time will induce a homogeneous frequency shift.

  8. Axisymmetric vibrations of laminated composite conical shells with varying thickness

    SciTech Connect

    Shikanai, G.; Suzuki, K.; Kojima, M.

    1995-11-01

    An exact solution procedure is presented for solving axisymmetric free vibrations of laminated composite conical shells with varying thickness. Based on the classical lamination theory neglecting shear deformation and rotary inertia, equations of motion and boundary conditions are obtained from the stationary conditions of the Lagrangian. The equations of motion are solved exactly by using a power series expansion for symmetrically laminated, cross-ply conical shells. Numerical studies are made for conical shells having both ends clamped to show the effects of the number of laminae, stacking sequences and other parameters upon the frequencies.

  9. A von Bertalanffy growth model with a seasonally varying coefficient

    USGS Publications Warehouse

    Cloern, James E.; Nichols, Frederic H.

    1978-01-01

    The von Bertalanffy model of body growth is inappropriate for organisms whose growth is restricted to a seasonal period because it assumes that growth rate is invariant with time. Incorporation of a time-varying coefficient significantly improves the capability of the von Bertalanffy equation to describe changing body size of both the bivalve mollusc Macoma balthicain San Francisco Bay and the flathead sole, Hippoglossoides elassodon, in Washington state. This simple modification of the von Bertalanffy model should offer improved predictions of body growth for a variety of other aquatic animals.

  10. Bending of solitons in weak and slowly varying inhomogeneous plasma

    SciTech Connect

    Mukherjee, Abhik Janaki, M. S. Kundu, Anjan

    2015-12-15

    The bending of solitons in two dimensional plane is presented in the presence of weak and slowly varying inhomogeneous ion density for the propagation of ion acoustic soliton in unmagnetized cold plasma with isothermal electrons. Using reductive perturbation technique, a modified Kadomtsev-Petviashvili equation is obtained with a chosen unperturbed ion density profile. The exact solution of the equation shows that the phase of the solitary wave gets modified by a function related to the unperturbed inhomogeneous ion density causing the soliton to bend in the two dimensional plane, while the amplitude of the soliton remains constant.

  11. Recursive time-varying filter banks for subband image coding

    NASA Technical Reports Server (NTRS)

    Smith, Mark J. T.; Chung, Wilson C.

    1992-01-01

    Filter banks and wavelet decompositions that employ recursive filters have been considered previously and are recognized for their efficiency in partitioning the frequency spectrum. This paper presents an analysis of a new infinite impulse response (IIR) filter bank in which these computationally efficient filters may be changed adaptively in response to the input. The filter bank is presented and discussed in the context of finite-support signals with the intended application in subband image coding. In the absence of quantization errors, exact reconstruction can be achieved and by the proper choice of an adaptation scheme, it is shown that IIR time-varying filter banks can yield improvement over conventional ones.

  12. Adjusting Permittivity by Blending Varying Ratios of SWNTs

    NASA Technical Reports Server (NTRS)

    Tour, James M.; Stephenson, Jason J.; Higginbotham, Amanda

    2012-01-01

    A new composite material of singlewalled carbon nanotubes (SWNTs) displays radio frequency (0 to 1 GHz) permittivity properties that can be adjusted based upon the nanotube composition. When varying ratios of raw to functionalized SWNTs are blended into the silicone elastomer matrix at a total loading of 0.5 percent by weight, a target real permittivity value can be obtained between 70 and 3. This has particular use for designing materials for microwave lenses, microstrips, filters, resonators, high-strength/low-weight electromagnetic interference (EMI) shielding, antennas, waveguides, and low-loss magneto-dielectric products for applications like radome construction.

  13. A simple cosmology with a varying fine structure constant.

    PubMed

    Sandvik, Håvard Bunes; Barrow, John D; Magueijo, João

    2002-01-21

    We investigate the cosmological consequences of a theory in which the electric charge e can vary. In this theory the fine structure "constant," alpha, remains almost constant in the radiation era, undergoes a small increase in the matter era, but approaches a constant value when the universe starts accelerating because of a positive cosmological constant. This model satisfies geonuclear, nucleosynthesis, and cosmic microwave background constraints on time variation in alpha, while fitting the observed accelerating Universe and evidence for small alpha variations in quasar spectra. It also places specific restrictions on the nature of the dark matter. Further tests, involving stellar spectra and Eötvös experiments, are proposed. PMID:11801051

  14. Reaching a consensus: a discrete nonlinear time-varying case

    NASA Astrophysics Data System (ADS)

    Saburov, M.; Saburov, K.

    2016-07-01

    In this paper, we have considered a nonlinear protocol for a structured time-varying and synchronous multi-agent system. By means of cubic triple stochastic matrices, we present an opinion sharing dynamics of the multi-agent system as a trajectory of a non-homogeneous system of cubic triple stochastic matrices. We show that the multi-agent system eventually reaches to a consensus if either of the following two conditions is satisfied: (1) every member of the group people has a positive subjective distribution on the given task after some revision steps or (2) all entries of some cubic triple stochastic matrix are positive.

  15. Parallel Rendering of Large Time-Varying Volume Data

    NASA Technical Reports Server (NTRS)

    Garbutt, Alexander E.

    2005-01-01

    Interactive visualization of large time-varying 3D volume datasets has been and still is a great challenge to the modem computational world. It stretches the limits of the memory capacity, the disk space, the network bandwidth and the CPU speed of a conventional computer. In this SURF project, we propose to develop a parallel volume rendering program on SGI's Prism, a cluster computer equipped with state-of-the-art graphic hardware. The proposed program combines both parallel computing and hardware rendering in order to achieve an interactive rendering rate. We use 3D texture mapping and a hardware shader to implement 3D volume rendering on each workstation. We use SGI's VisServer to enable remote rendering using Prism's graphic hardware. And last, we will integrate this new program with ParVox, a parallel distributed visualization system developed at JPL. At the end of the project, we Will demonstrate remote interactive visualization using this new hardware volume renderer on JPL's Prism System using a time-varying dataset from selected JPL applications.

  16. Varying fine structure 'constant' and charged black holes

    SciTech Connect

    Bekenstein, Jacob D.; Schiffer, Marcelo

    2009-12-15

    Speculation that the fine-structure constant {alpha} varies in spacetime has a long history. We derive, in 4-D general relativity and in isotropic coordinates, the solution for a charged spherical black hole according to the framework for dynamical {alpha} J. D. Bekenstein, Phys. Rev. D 25, 1527 (1982).. This solution coincides with a previously known one-parameter extension of the dilatonic black hole family. Among the notable properties of varying-{alpha} charged black holes are adherence to a 'no hair' principle, the absence of the inner (Cauchy) horizon of the Reissner-Nordstroem black holes, the nonexistence of precisely extremal black holes, and the appearance of naked singularities in an analytic extension of the relevant metric. The exteriors of almost extremal electrically (magnetically) charged black holes have simple structures which makes their influence on applied magnetic (electric) fields transparent. We rederive the thermodynamic functions of the modified black holes; the otherwise difficult calculation of the electric potential is done by a shortcut. We confirm that variability of {alpha} in the wake of expansion of the universe does not threaten the generalized second law.

  17. Budgerigar flight in a varying environment: flight at distinct speeds?

    PubMed

    Schiffner, Ingo; Srinivasan, Mandyam V

    2016-06-01

    How do flying birds respond to changing environments? The behaviour of budgerigars, Melopsittacus undulatus, was filmed as they flew through a tapered tunnel. Unlike flying insects-which vary their speed progressively and continuously by holding constant the optic flow induced by the walls-the birds showed a tendency to fly at only two distinct, fixed speeds. They switched between a high speed in the wider section of the tunnel, and a low speed in the narrower section. The transition between the two speeds was abrupt, and anticipatory. The high speed was close to the energy-efficient, outdoor cruising speed for these birds, while the low speed was approximately half this value. This is the first observation of the existence of two distinct, preferred flight speeds in birds. A dual-speed flight strategy may be beneficial for birds that fly in varying environments, with the high speed set at an energy-efficient value for flight through open spaces, and the low speed suited to safe manoeuvring in a cluttered environment. The constancy of flight speed within each regime enables the distances of obstacles and landmarks to be directly calibrated in terms of optic flow, thus facilitating simple and efficient guidance of flight through changing environments. PMID:27330173

  18. Sensitivity of solar g-modes to varying G cosmologies

    NASA Technical Reports Server (NTRS)

    Guenther, D. B.; Sills, Ken; Demarque, Pierre; Krauss, Lawrence M.

    1995-01-01

    The sensitivity of the solar g-mode oscillation spectrum to variability in the universal gravitational constant G is described. Solar models in varying G cosmologies were constructed by evolving a zero-age main-sequence stellar model to the Sun's current age, while allowing the value of G to change according to the power law G(t) proportional to t(exp -beta), where Beta approximately equals delta G/GH and H is the Hubble constant. All solar models were constrained to the observed luminosity and radius at the current age of the Sun by adjusting the helium abundance and the mixing-length parameter of the models in the usual way for standard stellar models. Low-l g-mode oscillation periods were calculated for each of the models and compared to the claimed observation of the solar g-mode oscillation spectrum by Hill & Gu (1990). If one accepts Hill & Gu's claims, then within the uncertainties of the physics of the solar model calculation, our models rule out all but (delta G/GH) less than approximately 0.05. In other words, we conclude that G could not have varied by more than 2% over the past 4.5 Gyr, the lifetime of the present-day Sun. This result lends independent support to the validity of the standard solar model.

  19. Constitutive Equation with Varying Parameters for Superplastic Flow Behavior

    NASA Astrophysics Data System (ADS)

    Guan, Zhiping; Ren, Mingwen; Jia, Hongjie; Zhao, Po; Ma, Pinkui

    2014-03-01

    In this study, constitutive equations for superplastic materials with an extra large elongation were investigated through mechanical analysis. From the view of phenomenology, firstly, some traditional empirical constitutive relations were standardized by restricting some strain paths and parameter conditions, and the coefficients in these relations were strictly given new mechanical definitions. Subsequently, a new, general constitutive equation with varying parameters was theoretically deduced based on the general mechanical equation of state. The superplastic tension test data of Zn-5%Al alloy at 340 °C under strain rates, velocities, and loads were employed for building a new constitutive equation and examining its validity. Analysis results indicated that the constitutive equation with varying parameters could characterize superplastic flow behavior in practical superplastic forming with high prediction accuracy and without any restriction of strain path or deformation condition, showing good industrial or scientific interest. On the contrary, those empirical equations have low prediction capabilities due to constant parameters and poor applicability because of the limit of special strain path or parameter conditions based on strict phenomenology.

  20. Spatially Varying Nanoconfinement as a Probe of Polymer Physics

    NASA Astrophysics Data System (ADS)

    Klotz, Alexander; Reisner, Walter

    2012-02-01

    Complex nanofluidic systems have the capability to unveil a rich landscape of new polymer physics. One-dimensional channels and two-dimensional slits have been used for precise measurements of persistence length and to verify scaling laws. Recently, devices with spatially varying confinement have been used to gain further control over single molecule polymer conformation. We use a system consisting of a nanofluidic slit embedded with a lattice of pits acting as entropic traps. Single DNA polymers in this system self-organize into discrete conformational states. We have shown that this system can be used to define stable DNA configurations at equilibrium and to fine-tune diffusion to a local minimum corresponding to stable conformational states. Measurements of mean occupancy with varying device parameters can be fit to theory, giving information about the confinement free energy of DNA in a nanoslit (a subject of controversy) and the strength of excluded volume interactions. Measurements of the excluded volume interaction provide information about the strength of intersegmental repulsive electrostatic interactions, quantified by the notion of effective width. The scaling of width with respect to salt concentration is observed in single DNA molecules for the first time.

  1. Methane emissions from California rice paddies with varied treatments

    NASA Astrophysics Data System (ADS)

    Cicerone, R. J.; Delwiche, C. C.; Tyler, S. C.; Zimmerman, P. R.

    1992-09-01

    Two field experiments in California rice paddies are reported, one with a single treatment of a research plot and the other with varied treatments in a typical commercial rice field. Small total methane emissions, only 11 g CH4/m2, were measured for the entire growing season in the first experiment. In the second experiment, the addition of exogenous organic matter (rice straw), the presence or absence of vegetation, and the nitrogen fertilizer amounts were examined for their influence on methane emissions. The total methane emission over the growing season varied from 1.2 g CH4/m2 (with no added organic matter) to 58.2 g CH4/m2 (with largest organic matter treatments). Added organic matter was the major factor affecting methane emissions. Vegetation did not greatly affect total methane fluxes, but it did influence the mode and timing of release. Nitrogen fertilizer did not greatly affect the amount of methane emitted, but it influenced slightly the time course of the process. A diurnal effect in methane emission was observed during the early ontogeny of the crop. The variation of methane emission with time during the course of the growing season was very unusual in this experiment; only one peak was observed, and it was early in the season. During the period of largest emissions, δ13C values of the methane were measured to be -55.7 ±1.8‰ in plots with added organic matter.

  2. Stochastic analysis of epidemics on adaptive time varying networks

    NASA Astrophysics Data System (ADS)

    Kotnis, Bhushan; Kuri, Joy

    2013-06-01

    Many studies investigating the effect of human social connectivity structures (networks) and human behavioral adaptations on the spread of infectious diseases have assumed either a static connectivity structure or a network which adapts itself in response to the epidemic (adaptive networks). However, human social connections are inherently dynamic or time varying. Furthermore, the spread of many infectious diseases occur on a time scale comparable to the time scale of the evolving network structure. Here we aim to quantify the effect of human behavioral adaptations on the spread of asymptomatic infectious diseases on time varying networks. We perform a full stochastic analysis using a continuous time Markov chain approach for calculating the outbreak probability, mean epidemic duration, epidemic reemergence probability, etc. Additionally, we use mean-field theory for calculating epidemic thresholds. Theoretical predictions are verified using extensive simulations. Our studies have uncovered the existence of an “adaptive threshold,” i.e., when the ratio of susceptibility (or infectivity) rate to recovery rate is below the threshold value, adaptive behavior can prevent the epidemic. However, if it is above the threshold, no amount of behavioral adaptations can prevent the epidemic. Our analyses suggest that the interaction patterns of the infected population play a major role in sustaining the epidemic. Our results have implications on epidemic containment policies, as awareness campaigns and human behavioral responses can be effective only if the interaction levels of the infected populace are kept in check.

  3. Shrinkage Estimation of Varying Covariate Effects Based On Quantile Regression

    PubMed Central

    Peng, Limin; Xu, Jinfeng; Kutner, Nancy

    2013-01-01

    Varying covariate effects often manifest meaningful heterogeneity in covariate-response associations. In this paper, we adopt a quantile regression model that assumes linearity at a continuous range of quantile levels as a tool to explore such data dynamics. The consideration of potential non-constancy of covariate effects necessitates a new perspective for variable selection, which, under the assumed quantile regression model, is to retain variables that have effects on all quantiles of interest as well as those that influence only part of quantiles considered. Current work on l1-penalized quantile regression either does not concern varying covariate effects or may not produce consistent variable selection in the presence of covariates with partial effects, a practical scenario of interest. In this work, we propose a shrinkage approach by adopting a novel uniform adaptive LASSO penalty. The new approach enjoys easy implementation without requiring smoothing. Moreover, it can consistently identify the true model (uniformly across quantiles) and achieve the oracle estimation efficiency. We further extend the proposed shrinkage method to the case where responses are subject to random right censoring. Numerical studies confirm the theoretical results and support the utility of our proposals. PMID:25332515

  4. Optimal transport in time-varying small-world networks

    NASA Astrophysics Data System (ADS)

    Chen, Qu; Qian, Jiang-Hai; Zhu, Liang; Han, Ding-Ding

    2016-03-01

    The time-order of interactions, which is regulated by some intrinsic activity, surely plays a crucial role regarding the transport efficiency of transportation systems. Here we study the optimal transport structure by measure of the length of time-respecting paths. Our network is built from a two-dimensional regular lattice, and long-range connections are allocated with probability Pi j˜rij -α , where ri j is the Manhattan distance. By assigning each shortcut an activity rate subjected to its geometric distance τi j˜rij -C , long-range links become active intermittently, leading to the time-varying dynamics. We show that for 0 varying transportation networks. Empirical studies on British Airways and Austrian Airlines provide consistent evidence with our conclusion.

  5. Study of selected phenotype switching strategies in time varying environment

    NASA Astrophysics Data System (ADS)

    Horvath, Denis; Brutovsky, Branislav

    2016-03-01

    Population heterogeneity plays an important role across many research, as well as the real-world, problems. The population heterogeneity relates to the ability of a population to cope with an environment change (or uncertainty) preventing its extinction. However, this ability is not always desirable as can be exemplified by an intratumor heterogeneity which positively correlates with the development of resistance to therapy. Causation of population heterogeneity is therefore in biology and medicine an intensively studied topic. In this paper the evolution of a specific strategy of population diversification, the phenotype switching, is studied at a conceptual level. The presented simulation model studies evolution of a large population of asexual organisms in a time-varying environment represented by a stochastic Markov process. Each organism disposes with a stochastic or nonlinear deterministic switching strategy realized by discrete-time models with evolvable parameters. We demonstrate that under rapidly varying exogenous conditions organisms operate in the vicinity of the bet-hedging strategy, while the deterministic patterns become relevant as the environmental variations are less frequent. Statistical characterization of the steady state regimes of the populations is done using the Hellinger and Kullback-Leibler functional distances and the Hamming distance.

  6. Varying Coefficient Models for Sparse Noise-contaminated Longitudinal Data

    PubMed Central

    2014-01-01

    Summary In this paper we propose a varying coefficient model for highly sparse longitudinal data that allows for error-prone time-dependent variables and time-invariant covariates. We develop a new estimation procedure, based on covariance representation techniques, that enables effective borrowing of information across all subjects in sparse and irregular longitudinal data observed with measurement error, a challenge in which there is no adequate solution currently. More specifically, sparsity is addressed via a functional analysis approach that considers the observed longitudinal data as noise contaminated realizations of a random process that produces smooth trajectories. This approach allows for estimation based on pooled data, borrowing strength from all subjects, in targeting the mean functions and auto- and cross-covariances to overcome sparse noisy designs. The resulting estimators are shown to be uniformly consistent. Consistent prediction for the response trajectories are also obtained via conditional expectation under Gaussian assumptions. Asymptotic distribution of the predicted response trajectories are derived, allowing for construction of asymptotic pointwise confidence bands. Efficacy of the proposed method is investigated in simulation studies and compared to the commonly used local polynomial smoothing method. The proposed method is illustrated with a sparse longitudinal data set, examining the age-varying relationship between calcium absorption and dietary calcium. Prediction of individual calcium absorption curves as a function of age are also examined. PMID:25589822

  7. Fractional domain varying-order differential denoising method

    NASA Astrophysics Data System (ADS)

    Zhang, Yan-Shan; Zhang, Feng; Li, Bing-Zhao; Tao, Ran

    2014-10-01

    Removal of noise is an important step in the image restoration process, and it remains a challenging problem in image processing. Denoising is a process used to remove the noise from the corrupted image, while retaining the edges and other detailed features as much as possible. Recently, denoising in the fractional domain is a hot research topic. The fractional-order anisotropic diffusion method can bring a less blocky effect and preserve edges in image denoising, a method that has received much interest in the literature. Based on this method, we propose a new method for image denoising, in which fractional-varying-order differential, rather than constant-order differential, is used. The theoretical analysis and experimental results show that compared with the state-of-the-art fractional-order anisotropic diffusion method, the proposed fractional-varying-order differential denoising model can preserve structure and texture well, while quickly removing noise, and yields good visual effects and better peak signal-to-noise ratio.

  8. Evaluating multivariate visualizations on time-varying data

    NASA Astrophysics Data System (ADS)

    Livingston, Mark A.; Decker, Jonathan W.; Ai, Zhuming

    2013-01-01

    Multivariate visualization techniques have been applied to a wide variety of visual analysis tasks and a broad range of data types and sources. Their utility has been evaluated in a modest range of simple analysis tasks. In this work, we extend our previous task to a case of time-varying data. We implemented ve visualizations of our synthetic test data: three previously evaluated techniques (Data-driven Spots, Oriented Slivers, and Attribute Blocks), one hybrid of the rst two that we call Oriented Data-driven Spots, and an implementation of Attribute Blocks that merges the temporal slices. We conducted a user study of these ve techniques. Our previous nding (with static data) was that users performed best when the density of the target (as encoded in the visualization) was either highest or had the highest ratio to non-target features. The time-varying presentations gave us a wider range of density and density gains from which to draw conclusions; we now see evidence for the density gain as the perceptual measure, rather than the absolute density.

  9. Integrated Sachs-Wolfe effect in time varying vacuum model

    SciTech Connect

    Wang, Y. T.; Gui, Y. X.; Xu, L. X.; Lu, J. B.

    2010-04-15

    The integrated Sachs-Wolfe (ISW) effect is an important implication for dark energy. In this paper, we have calculated the power spectrum of the ISW effect in the time varying vacuum cosmological model, where the model parameter {beta}=4.407 is obtained by the observational constraint of the growth rate. It is found that the source of the ISW effect is not only affected by the different evolutions of the Hubble function H(a) and the dimensionless matter density {Omega}{sub m}(a), but also by the different growth function D{sub +}(a), all of which are changed due to the presence of a matter production term in the time varying vacuum model. However, the difference of the ISW effect in the {Lambda}(t)CDM model and the {Lambda}CDM model is lessened to a certain extent because of the integration from the time of last scattering to the present. It is implied that the observations of the galaxies with high redshift are required to distinguish the two models.

  10. Optimal color temperature adjustment for mobile devices under varying illuminants

    NASA Astrophysics Data System (ADS)

    Choi, Kyungah; Suk, Hyeon-Jeong

    2014-01-01

    With the wide use of mobile devices, display color reproduction has become extremely important. The purpose of this study is to investigate the optimal color temperature for mobile displays under varying illuminants. The effect of the color temperature and the illuminance of ambient lighting on user preferences were observed. For a visual examination, a total of 19 nuanced whites were examined under 20 illuminants. A total of 19 display stimuli with different color temperatures (2,500 K ~ 19,600 K) were presented on an iPad3 (New iPad). The ambient illuminants ranged in color temperature from 2,500 K to 19,800 K and from 0 lx to 3,000 lx in illuminance. Supporting previous studies of color reproduction, there was found to be a positive correlation between the color temperature of illuminants and that of optimal whites. However, the relationship was not linear. Based on assessments by 56 subjects, a regression equation was derived to predict the optimal color temperature adjustment under varying illuminants, as follows: [Display Tcp = 5138.93 log(Illuminant Tcp) - 11956.59, p<.001, R2=0.94]. Moreover, the influence of an illuminant was positively correlated with the illuminance level, confirming the findings of previous studies. It is expected that the findings of this study can be used as the theoretical basis when designing a color strategy for mobile display devices.

  11. Study of W/WC Coatings Varying the Substrate Temperature

    NASA Astrophysics Data System (ADS)

    Ospina, R.; Restrepo, E.; Arango, Y. C.; Castillo, H.; Devia, A.

    2006-12-01

    Tungsten carbide is considered a very important material used for industrial applications due to their high hardness. In this work the production of W/WC coatings used a repetitive pulsed arc system is employed. During the grown process, the substrate temperature is varied in order to identify the influence of this parameter in the structure, composition and morphology of the coatings. The layer of W is grown to improve the adherence of the WC material on the stainless steel 304. To grown the coatings, it was used a W target in the cathode. The gas of work is methane and as it is knew, to use a gas as precursor for WC production causes the apparition of different phases as WC and W2C. The power supply allows varying the active and passive time of pulses, which in this case have a value of 1 s. the coatings produced are characterized by X-ray diffraction (XRD), X-photoelectron spectroscopy (XPS) and scanning probe microscopy (SPM). All of these techniques allow determining properties such as chemical composition, structure, stoichiometry, thickness and grain size.

  12. Linear parameter varying battery model identification using subspace methods

    NASA Astrophysics Data System (ADS)

    Hu, Y.; Yurkovich, S.

    2011-03-01

    The advent of hybrid and plug-in hybrid electric vehicles has created a demand for more precise battery pack management systems (BMS). Among methods used to design various components of a BMS, such as state-of-charge (SoC) estimators, model based approaches offer a good balance between accuracy, calibration effort and implementability. Because models used for these approaches are typically low in order and complexity, the traditional approach is to identify linear (or slightly nonlinear) models that are scheduled based on operating conditions. These models, formally known as linear parameter varying (LPV) models, tend to be difficult to identify because they contain a large amount of coefficients that require calibration. Consequently, the model identification process can be very laborious and time-intensive. This paper describes a comprehensive identification algorithm that uses linear-algebra-based subspace methods to identify a parameter varying state variable model that can describe the input-to-output dynamics of a battery under various operating conditions. Compared with previous methods, this approach is much faster and provides the user with information on the order of the system without placing an a priori structure on the system matrices. The entire process and various nuances are demonstrated using data collected from a lithium ion battery, and the focus is on applications for energy storage in automotive applications.

  13. Contagion dynamics in time-varying metapopulation networks

    NASA Astrophysics Data System (ADS)

    Baronchelli, Andrea; Liu, Suyu; Perra, Nicola

    2013-03-01

    The metapopulation framework is adopted in a wide array of disciplines to describe systems of well separated yet connected subpopulations. The subgroups/patches are often represented as nodes in a network whose links represent the migration routes among them. The connections are usually considered as static, an approximation that is appropriate for the description of many systems, such as cities connected by human mobility, but it is obviously inadequate in those real systems where links evolve in time on a faster timescale. In the case of farmed animals, for example, the connections between each farm/node vary in time according to the different stages of production. Here we address this case by investigating simple contagion processes on temporal metapopulation networks. We focus on the SIR process, and we determine the mobility threshold for the onset of an epidemic spreading in the framework of activity-driven network models. Remarkably, we find profound differences from the case of static networks, determined by the crucial role played by the dynamical parameters defining the average number of instantaneously migrating individuals. Our results confirm the importance of addressing the time-varying properties of complex networks pointed out by the recent literature.

  14. Flexible Demand Management under Time-Varying Prices

    NASA Astrophysics Data System (ADS)

    Liang, Yong

    In this dissertation, the problem of flexible demand management under time-varying prices is studied. This generic problem has many applications, which usually have multiple periods in which decisions on satisfying demand need to be made, and prices in these periods are time-varying. Examples of such applications include multi-period procurement problem, operating room scheduling, and user-end demand scheduling in the Smart Grid, where the last application is used as the main motivating story throughout the dissertation. The current grid is experiencing an upgrade with lots of new designs. What is of particular interest is the idea of passing time-varying prices that reflect electricity market conditions to end users as incentives for load shifting. One key component, consequently, is the demand management system at the user-end. The objective of the system is to find the optimal trade-off between cost saving and discomfort increment resulted from load shifting. In this dissertation, we approach this problem from the following aspects: (1) construct a generic model, solve for Pareto optimal solutions, and analyze the robust solution that optimizes the worst-case payoffs, (2) extend to a distribution-free model for multiple types of demand (appliances), for which an approximate dynamic programming (ADP) approach is developed, and (3) design other efficient algorithms for practical purposes of the flexible demand management system. We first construct a novel multi-objective flexible demand management model, in which there are a finite number of periods with time-varying prices, and demand arrives in each period. In each period, the decision maker chooses to either satisfy or defer outstanding demand to minimize costs and discomfort over a certain number of periods. We consider both the deterministic model, models with stochastic demand or prices, and when only partial information about the stochastic demand or prices is known. We first analyze the stochastic

  15. A hierarchical nest survival model integrating incomplete temporally varying covariates

    PubMed Central

    Converse, Sarah J; Royle, J Andrew; Adler, Peter H; Urbanek, Richard P; Barzen, Jeb A

    2013-01-01

    Nest success is a critical determinant of the dynamics of avian populations, and nest survival modeling has played a key role in advancing avian ecology and management. Beginning with the development of daily nest survival models, and proceeding through subsequent extensions, the capacity for modeling the effects of hypothesized factors on nest survival has expanded greatly. We extend nest survival models further by introducing an approach to deal with incompletely observed, temporally varying covariates using a hierarchical model. Hierarchical modeling offers a way to separate process and observational components of demographic models to obtain estimates of the parameters of primary interest, and to evaluate structural effects of ecological and management interest. We built a hierarchical model for daily nest survival to analyze nest data from reintroduced whooping cranes (Grus americana) in the Eastern Migratory Population. This reintroduction effort has been beset by poor reproduction, apparently due primarily to nest abandonment by breeding birds. We used the model to assess support for the hypothesis that nest abandonment is caused by harassment from biting insects. We obtained indices of blood-feeding insect populations based on the spatially interpolated counts of insects captured in carbon dioxide traps. However, insect trapping was not conducted daily, and so we had incomplete information on a temporally variable covariate of interest. We therefore supplemented our nest survival model with a parallel model for estimating the values of the missing insect covariates. We used Bayesian model selection to identify the best predictors of daily nest survival. Our results suggest that the black fly Simulium annulus may be negatively affecting nest survival of reintroduced whooping cranes, with decreasing nest survival as abundance of S. annulus increases. The modeling framework we have developed will be applied in the future to a larger data set to evaluate the

  16. Lichen Persistence and Recovery in Response to Varied Volcanic Disturbances

    NASA Astrophysics Data System (ADS)

    Nelson, P.; Wheeler, T. B.

    2015-12-01

    Volcanic eruptions produce many ecological disturbances that structure vegetation. While lichens are sensitive to disturbances, little is known about their responses to volcanic disturbances, except for colonization of lava. We examined lichen community responses through time to different disturbances produced by the May 1, 2008 eruption of Volcan Chaiten in south-central Chile. Pre-eruption vegetation near the volcano was old-growth Valdivian temperate rainforest dominated by closed-canopy Nothofagus sp... In 2012, we installed thirteen 1-acre plots across volcanic disturbance zones on which a time-constrained search was done for all macrolichen species, each of which was assigned an approximate log10 categorical abundance. We also installed a 0.2 m2 quadrat on two representative trees per plot for repeat photography of lichen cover. We remeasured at least one plot per disturbance zone in 2014 and re-photographed tree quadrats in 2013 and 2014. We then analyzed species composition and abundance differences among disturbance zones. In 2012, the blast (pyroclastic density flow), scorch (standing scorched forest at the edge of the blast) and deep tephra (>10 cm) zones had the lowest lichen species richness (5-13 species), followed by reference (unimpacted) and shallow (<10 cm) tephra (17-20 species). Gravel rain (preexisting rock ejected by eruption initiation), gravel rain + pumice and flooded forests (fluvially reworked volcanic material entrained by heavy rains) were species-rich (25-42 species). In 2014, the blast and deep tephra had regained 2-3 times the number of lichen species since 2012 while the light tephra and reference were essentially unchanged. Gravel rain, gravel rain + pumice and flooded forest plots all had about the same number of species in 2014 as 2012. Lichen colonization and growth in tree quadrats varied widely, from very little colonization in the blast to prolific colonization in the gravel rain + pumice zone. Lichen's varied responses to

  17. A hierarchical nest survival model integrating incomplete temporally varying covariates

    USGS Publications Warehouse

    Converse, Sarah J.; Royle, J. Andrew; Adler, Peter H.; Urbanek, Richard P.; Barzan, Jeb A.

    2013-01-01

    Nest success is a critical determinant of the dynamics of avian populations, and nest survival modeling has played a key role in advancing avian ecology and management. Beginning with the development of daily nest survival models, and proceeding through subsequent extensions, the capacity for modeling the effects of hypothesized factors on nest survival has expanded greatly. We extend nest survival models further by introducing an approach to deal with incompletely observed, temporally varying covariates using a hierarchical model. Hierarchical modeling offers a way to separate process and observational components of demographic models to obtain estimates of the parameters of primary interest, and to evaluate structural effects of ecological and management interest. We built a hierarchical model for daily nest survival to analyze nest data from reintroduced whooping cranes (Grus americana) in the Eastern Migratory Population. This reintroduction effort has been beset by poor reproduction, apparently due primarily to nest abandonment by breeding birds. We used the model to assess support for the hypothesis that nest abandonment is caused by harassment from biting insects. We obtained indices of blood-feeding insect populations based on the spatially interpolated counts of insects captured in carbon dioxide traps. However, insect trapping was not conducted daily, and so we had incomplete information on a temporally variable covariate of interest. We therefore supplemented our nest survival model with a parallel model for estimating the values of the missing insect covariates. We used Bayesian model selection to identify the best predictors of daily nest survival. Our results suggest that the black fly Simulium annulus may be negatively affecting nest survival of reintroduced whooping cranes, with decreasing nest survival as abundance of S. annulus increases. The modeling framework we have developed will be applied in the future to a larger data set to evaluate the

  18. A hierarchical nest survival model integrating incomplete temporally varying covariates.

    PubMed

    Converse, Sarah J; Royle, J Andrew; Adler, Peter H; Urbanek, Richard P; Barzen, Jeb A

    2013-11-01

    Nest success is a critical determinant of the dynamics of avian populations, and nest survival modeling has played a key role in advancing avian ecology and management. Beginning with the development of daily nest survival models, and proceeding through subsequent extensions, the capacity for modeling the effects of hypothesized factors on nest survival has expanded greatly. We extend nest survival models further by introducing an approach to deal with incompletely observed, temporally varying covariates using a hierarchical model. Hierarchical modeling offers a way to separate process and observational components of demographic models to obtain estimates of the parameters of primary interest, and to evaluate structural effects of ecological and management interest. We built a hierarchical model for daily nest survival to analyze nest data from reintroduced whooping cranes (Grus americana) in the Eastern Migratory Population. This reintroduction effort has been beset by poor reproduction, apparently due primarily to nest abandonment by breeding birds. We used the model to assess support for the hypothesis that nest abandonment is caused by harassment from biting insects. We obtained indices of blood-feeding insect populations based on the spatially interpolated counts of insects captured in carbon dioxide traps. However, insect trapping was not conducted daily, and so we had incomplete information on a temporally variable covariate of interest. We therefore supplemented our nest survival model with a parallel model for estimating the values of the missing insect covariates. We used Bayesian model selection to identify the best predictors of daily nest survival. Our results suggest that the black fly Simulium annulus may be negatively affecting nest survival of reintroduced whooping cranes, with decreasing nest survival as abundance of S. annulus increases. The modeling framework we have developed will be applied in the future to a larger data set to evaluate the

  19. Formulating Spatially Varying Performance in the Statistical Fusion Framework

    PubMed Central

    Landman, Bennett A.

    2012-01-01

    To date, label fusion methods have primarily relied either on global (e.g. STAPLE, globally weighted vote) or voxelwise (e.g. locally weighted vote) performance models. Optimality of the statistical fusion framework hinges upon the validity of the stochastic model of how a rater errs (i.e., the labeling process model). Hitherto, approaches have tended to focus on the extremes of potential models. Herein, we propose an extension to the STAPLE approach to seamlessly account for spatially varying performance by extending the performance level parameters to account for a smooth, voxelwise performance level field that is unique to each rater. This approach, Spatial STAPLE, provides significant improvements over state-of-the-art label fusion algorithms in both simulated and empirical data sets. PMID:22438513

  20. Spall Strength Measurements of Concrete for Varying Aggregate Sizes

    SciTech Connect

    Chhabildas, Lalit C.; Kipp, Marlin E.; Reinhart, William D.; Wilson, Leonard T.

    1999-05-05

    Controlled impact experiments have been performed to determine the spall strength of four different concrete compositions. The four concrete compositions are identified as, `SAC-5, CSPC', ("3/4") large, and ("3/8") small, Aggregate. They differ primarily in aggregate size but with average densities varying by less than five percent. Wave profiles from sixteen experiments, with shock amplitudes of 0.07 to 0.55 GPa, concentrate primarily within the elastic regime. Free-surface particle velocity measurements indicate consistent pullback signals in the release profiles, denoting average span strength of approximately 40 MPa. It is the purpose of this paper to present spall measurements under uniaxial strain loading. Notwithstanding considerable wave structure that is a unique characteristic to the heterogeneous nature of the scaled concrete, the spall amplitudes appear reproducible and consistent over the pressure range reported in this study.

  1. Does Uptake of Pharmaceuticals Vary Across Earthworm Species?

    PubMed

    Carter, Laura J; Ryan, Jim J; Boxall, Alistair B A

    2016-09-01

    This study compared the uptake and depuration of four commonly used pharmaceuticals (carbamazepine, diclofenac, fluoxetine and orlistat) in two earthworm species (Lumbricus terrestris and Eisenia fetida). L. terrestris are a larger species and often found in deep burrows whereas E. fetida prefer to reside near the soil surface. Species burrowing habits and sizes may alter uptake by earthworms. All four pharmaceuticals were taken up into both L. terrestris and E. fetida tissue after 21 days exposure to spiked soil. Bioconcentration factors (BCFs) ranged between 1.72 and 29.83 for L. terrestris and 1.14 and 63.03 for E. fetida. For carbamazepine and diclofenac, BCFs were similar whereas for fluoxetine and orlistat, BCFs in E. fetida were more than double those seen in L. terrestris. Results indicate that uptake into earthworms cannot be generalised between species and that the influence of species traits can vary depending on the nature of the study chemical. PMID:27443341

  2. Controlling Contagion Processes in Time-Varying Networks

    NASA Astrophysics Data System (ADS)

    Perra, Nicola; Liu, Suyu; Karsai, Marton; Vespignani, Alessandro

    2014-03-01

    The vast majority of strategies aimed at controlling contagion processes on networks considers the connectivity pattern of the system as either quenched or annealed. However, in the real world many networks are highly dynamical and evolve in time concurrently to the contagion process. Here, we derive an analytical framework for the study of control strategies specifically devised for time-varying networks. We consider the removal/immunization of individual nodes according the their activity in the network and develop a block variable mean-field approach that allows the derivation of the equations describing the evolution of the contagion process concurrently to the network dynamic. We derive the critical immunization threshold and assess the effectiveness of the control strategies. Finally, we validate the theoretical picture by simulating numerically the information spreading process and control strategies in both synthetic networks and a large-scale, real-world mobile telephone call dataset.

  3. Calving rates at tidewater glaciers vary strongly with ocean temperature

    PubMed Central

    Luckman, Adrian; Benn, Douglas I.; Cottier, Finlo; Bevan, Suzanne; Nilsen, Frank; Inall, Mark

    2015-01-01

    Rates of ice mass loss at the calving margins of tidewater glaciers (frontal ablation rates) are a key uncertainty in sea level rise projections. Measurements are difficult because mass lost is replaced by ice flow at variable rates, and frontal ablation incorporates sub-aerial calving, and submarine melt and calving. Here we derive frontal ablation rates for three dynamically contrasting glaciers in Svalbard from an unusually dense series of satellite images. We combine ocean data, ice-front position and terminus velocity to investigate controls on frontal ablation. We find that frontal ablation is not dependent on ice dynamics, nor reduced by glacier surface freeze-up, but varies strongly with sub-surface water temperature. We conclude that calving proceeds by melt undercutting and ice-front collapse, a process that may dominate frontal ablation where submarine melt can outpace ice flow. Our findings illustrate the potential for deriving simple models of tidewater glacier response to oceanographic forcing. PMID:26450063

  4. Epidemic spreading in time-varying community networks

    SciTech Connect

    Ren, Guangming E-mail: ren-guang-ming@163.com; Wang, Xingyuan E-mail: ren-guang-ming@163.com

    2014-06-15

    The spreading processes of many infectious diseases have comparable time scale as the network evolution. Here, we present a simple networks model with time-varying community structure, and investigate susceptible-infected-susceptible epidemic spreading processes in this model. By both theoretic analysis and numerical simulations, we show that the efficiency of epidemic spreading in this model depends intensively on the mobility rate q of the individuals among communities. We also find that there exists a mobility rate threshold q{sub c}. The epidemic will survive when q > q{sub c} and die when q < q{sub c}. These results can help understanding the impacts of human travel on the epidemic spreading in complex networks with community structure.

  5. Gravity effects of polyhedral bodies with linearly varying density

    NASA Astrophysics Data System (ADS)

    D'Urso, M. G.

    2014-12-01

    We extend a recent approach for computing the gravity effects of polyhedral bodies with uniform density by the case of bodies with linearly varying density and by consistently taking into account the relevant singularities. We show in particular that the potential and the gravity vector can be given an expression in which singularities are ruled out, thus avoiding the introduction of small positive numbers advocated by some authors in order to circumvent undefined operations. We also prove that the entries of the second derivative exhibit a singularity if and only if the observation point is aligned with an edge of a face of the polyhedron. The formulas presented in the paper have been numerically checked with alternative ones derived on the basis of different approaches, already established in the literature, and intensively tested by computing the gravity effects induced by real asteroids with arbitrarily assigned density variations.

  6. Parameterized modeling and estimation of spatially varying optical blur

    NASA Astrophysics Data System (ADS)

    Simpkins, Jonathan D.; Stevenson, Robert L.

    2015-02-01

    Optical blur can display significant spatial variation across the image plane, even for constant camera settings and object depth. Existing solutions to represent this spatially varying blur requires a dense sampling of blur kernels across the image, where each kernel is defined independent of the neighboring kernels. This approach requires a large amount of data collection, and the estimation of the kernels is not as robust as if it were possible to incorporate knowledge of the relationship between adjacent kernels. A novel parameterized model is presented which relates the blur kernels at different locations across the image plane. The model is motivated by well-established optical models, including the Seidel aberration model. It is demonstrated that the proposed model can unify a set of hundreds of blur kernel observations across the image plane under a single 10-parameter model, and the accuracy of the model is demonstrated with simulations and measurement data collected by two separate research groups.

  7. Optical waveguide device with an adiabatically-varying width

    DOEpatents

    Watts; Michael R. , Nielson; Gregory N.

    2011-05-10

    Optical waveguide devices are disclosed which utilize an optical waveguide having a waveguide bend therein with a width that varies adiabatically between a minimum value and a maximum value of the width. One or more connecting members can be attached to the waveguide bend near the maximum value of the width thereof to support the waveguide bend or to supply electrical power to an impurity-doped region located within the waveguide bend near the maximum value of the width. The impurity-doped region can form an electrical heater or a semiconductor junction which can be activated with a voltage to provide a variable optical path length in the optical waveguide. The optical waveguide devices can be used to form a tunable interferometer (e.g. a Mach-Zehnder interferometer) which can be used for optical modulation or switching. The optical waveguide devices can also be used to form an optical delay line.

  8. Time-varying priority queuing models for human dynamics.

    PubMed

    Jo, Hang-Hyun; Pan, Raj Kumar; Kaski, Kimmo

    2012-06-01

    Queuing models provide insight into the temporal inhomogeneity of human dynamics, characterized by the broad distribution of waiting times of individuals performing tasks. We theoretically study the queuing model of an agent trying to execute a task of interest, the priority of which may vary with time due to the agent's "state of mind." However, its execution is disrupted by other tasks of random priorities. By considering the priority of the task of interest either decreasing or increasing algebraically in time, we analytically obtain and numerically confirm the bimodal and unimodal waiting time distributions with power-law decaying tails, respectively. These results are also compared to the updating time distribution of papers in arXiv.org and the processing time distribution of papers in Physical Review journals. Our analysis helps to understand human task execution in a more realistic scenario. PMID:23005156

  9. Cold fission description with constant and varying mass asymmetries

    NASA Astrophysics Data System (ADS)

    Duarte, S. B.; Rodríguez, O.; Tavares, O. A. P.; Gonçalves, M.; García, F.; Guzmán, F.

    1998-05-01

    Different descriptions for varying the mass asymmetry in the fragmentation process are used to calculate the cold fission barrier penetrability. The relevance of the appropriate choice for both the description of the prescission phase and inertia coefficient to unify alpha decay, cluster radioactivity, and spontaneous cold fission processes in the same theoretical framework is explicitly shown. We calculate the half-life of all possible partition modes of nuclei of A>200 following the most recent Mass Table by Audi and Wapstra. It is shown that if one uses the description in which the mass asymmetry is maintained constant during the fragmentation process, the experimental half-life values and mass yield of 234U cold fission are satisfactorily reproduced.

  10. Attitudes as Object-Evaluation Associations of Varying Strength

    PubMed Central

    Fazio, Russell H.

    2009-01-01

    Historical developments regarding the attitude concept are reviewed, and set the stage for consideration of a theoretical perspective that views attitude, not as a hypothetical construct, but as evaluative knowledge. A model of attitudes as object-evaluation associations of varying strength is summarized, along with research supporting the model’s contention that at least some attitudes are represented in memory and activated automatically upon the individual’s encountering the attitude object. The implications of the theoretical perspective for a number of recent discussions related to the attitude concept are elaborated. Among these issues are the notion of attitudes as “constructions,” the presumed malleability of automatically-activated attitudes, correspondence between implicit and explicit measures of attitude, and postulated dual or multiple attitudes. PMID:19424447

  11. Hemophagocytic Lymphohistiocytosis Associated with Visceral Leishmaniasis: Varied Presentation.

    PubMed

    Ranjan, Piyush; Kumar, Vivek; Ganguly, Shuvadeep; Sukumar, M; Sharma, Sanchit; Singh, Neha; Vikram, Naval K; Pati, Hara Prasad; Sood, Rita

    2016-06-01

    Visceral leishmaniasis (VL) is endemic in many parts of India. Rarely, it may be complicated by hemophagocytic lymphohistiocytosis (HLH) that has varied presentation and course. We describe two cases of VL complicated by HLH that were markedly different in clinical presentation, course and management. First case presented with Fever of unknown origin whereas second case had fever with severe bleeding manifestations. VL was diagnosed by bone marrow aspiration and serum rk39 immunodiagnostic test respectively in these cases. HLH was diagnosed by HLH 2004 diagnostic criteria. VL was treated by intravenous amphotericin B in both cases. HLH was managed by treating primary disease in the first case whereas steroid was given for management in the second case. High index of suspicion is crucial for early diagnosis of HLH to reduce morbidity and mortality. PMID:27408434

  12. Low redshift universe and a varying ghost dark energy

    NASA Astrophysics Data System (ADS)

    Khurshudyan, M.

    2016-03-01

    Recently, a phenomenological modification of ghost dark energy has been suggested and appropriate models of low redshift universe have been constructed. In this paper, we will consider a model of low redshift universe in General Relativity containing another model of varying ghost dark energy. In this model, an effective fluid is a radiation-like fluid in an early universe and evolves to quintessence dark energy in large scale universe. Cosmographic analysis of new model is performed and appropriate constraints on the parameters of the model are obtained. We have a look at suggested model via statefinder hierarchy in addition to thermodynamical description of it. We also study massless particle creation possibility in a radiation dominated universe of our cosmological model. According to our theoretical results, massless particle production is possible. To study particle creation, a straight analogy between quantization in Minkowski background and canonical quantization of a scalar field in curved dynamical backgrounds is taken into account.

  13. Child-Langmuir flow with periodically varying anode voltage

    SciTech Connect

    Rokhlenko, A.

    2015-02-15

    Using the Lagrangian technique, we study settled Child-Langmuir flows in a one dimensional planar diodes whose anode voltages periodically vary around given positive values. Our goal is to find analytically if the average currents in these systems can exceed the famous Child-Langmuir limit found for the stationary current a long time ago. The main result of our study is that in a periodic quasi-stationary regime the average current can be larger than the Child-Langmuir maximum even by 50% compared with its adiabatic average value. The cathode current in this case has the form of rectangular pulses which are formed by a very special triangular voltage modulation. This regime, i.e., periodicity, shape of pulses, and their amplitude, needs to be carefully chosen for the best performance.

  14. Local non-Gaussianity from rapidly varying sound speeds

    SciTech Connect

    Emery, Jon; Tasinato, Gianmassimo; Wands, David E-mail: gianmassimo.tasinato@port.ac.uk

    2012-08-01

    We study the effect of non-trivial sound speeds on local-type non-Gaussianity during multiple-field inflation. To this end, we consider a multiple-DBI model and use the δN formalism to track the super-horizon evolution of perturbations. By adopting a sum separable Hubble parameter we derive analytic expressions for the relevant quantities in the two-field case, valid beyond slow variation. We find that non-trivial sound speeds can, in principle, curve the trajectory in such a way that significant local-type non-Gaussianity is produced. Deviations from slow variation, such as rapidly varying sound speeds, enhance this effect. To illustrate our results we consider two-field inflation in the tip regions of two warped throats and find large local-type non-Gaussianity produced towards the end of the inflationary process.

  15. Systems and methods of varying charged particle beam spot size

    SciTech Connect

    Chen, Yu-Jiuan

    2014-09-02

    Methods and devices enable shaping of a charged particle beam. A modified dielectric wall accelerator includes a high gradient lens section and a main section. The high gradient lens section can be dynamically adjusted to establish the desired electric fields to minimize undesirable transverse defocusing fields at the entrance to the dielectric wall accelerator. Once a baseline setting with desirable output beam characteristic is established, the output beam can be dynamically modified to vary the output beam characteristics. The output beam can be modified by slightly adjusting the electric fields established across different sections of the modified dielectric wall accelerator. Additional control over the shape of the output beam can be excreted by introducing intentional timing de-synchronization offsets and producing an injected beam that is not fully matched to the entrance of the modified dielectric accelerator.

  16. Radiometric correction of SAR images of varying terrain heights

    NASA Technical Reports Server (NTRS)

    Freeman, A.; Moghaddam, M.; Zink, M.; Zebker, H.

    1992-01-01

    The advantages and disadvantages of three different approaches to solving the problem of the radiometric correction of synthetic aperture radar (SAR) images of varying terrain heights are presented. The first approach involves registration of a digital elevation model (DEM) of the terrain to the image, determination of the local elevation and incidence angles, and appropriate radiometric correction. The second approach uses a DEM generated from interferometric SAR data to derive the elevation and incidence angle maps. In the third approach, a monopulse technique is employed to determine the elevation angle only. The relative errors in radiometric correction between these approaches are assessed. Calibration errors are estimated using corner reflectors deployed within some of the scenes imaged by the Jet Propulsion Laboratory airborne SAR (JPL AIRSAR).

  17. Viscous drop collisions on surfaces of varying wettability

    NASA Astrophysics Data System (ADS)

    Bolleddula, Daniel; Berchielli, Al; Aliseda, Alberto

    2010-11-01

    We present an experimental study of increasingly viscous acetone rich and Newtonian equivalent liquid drops colliding on surfaces of varying wettability. This class of liquids applies directly to spray coating processes in pharmaceutical industries. The results from this study will elucidate the physics in a regime where resisting viscous forces and the restoring forces of capillarity are balanced, Oh˜ 1. Early spreading dynamics τ=Ut/D 1 indicate negligible dependence on contact angles while longer times demonstrate deviations from Tanner's law, D˜t^1/10. We will compare our results with recent theory to demonstrate the feasibility of modelling complex rheology spreading characteristics over short and long time scales. Preliminary results indicate an intermediate spreading regime following the inertial phase where the diameter, D˜t^n with 1/7 < n < 1/5.

  18. Constraining PCP Violating Varying Alpha Theory through Laboratory Experiments

    SciTech Connect

    Maity, Debaprasad; Chen, Pisin; /NCTS, Taipei /Taiwan, Natl. Taiwan U. /KIPAC, Menlo Park /SLAC

    2012-06-06

    In this report we have studied the implication of a parity and charge-parity (PCP) violating interaction in varying alpha theory. Due to this interaction, the state of photon polarization can change when it passes through a strong background magnetic field. We have calculated the optical rotation and ellipticity of the plane of polarization of an electromagnetic wave and tested our results against different laboratory experiments. Our model contains a PCP violating parameter {beta} and a scale of alpha variation {omega}. By analyzing the laboratory experimental data, we found the most stringent constraints on our model parameters to be 1 {le} {omega} {le} 10{sup 13} GeV{sup 2} and -0.5 {le} {beta} {le} 0.5. We also found that with the existing experimental input parameters it is very difficult to detect the ellipticity in the near future.

  19. Reconstructing the dark energy equation of state with varying couplings

    SciTech Connect

    Avelino, P. P.; Martins, C. J. A. P.; Nunes, N. J.; Olive, K. A.

    2006-10-15

    We revisit the idea of using varying couplings to probe the nature of dark energy, in particular, by reconstructing its equation of state. We show that for the class of models studied this method can be far superior to the standard methods (using type Ia supernovae or weak lensing). We also show that the simultaneous use of measurements of the fine-structure constant {alpha} and the electron-to-proton mass ratio {mu} allows a direct probe of grand unification scenarios. We present forecasts for the sensitivity of this method, both for the near future and for the next generation of spectrographs--for the latter we focus on the planned CODEX instrument for ESO's Extremely Large Telescope (formerly known as OWL). A high-accuracy reconstruction of the equation of state may be possible all the way up to redshift z{approx}4.

  20. THE VARIED INFLUENCE OF SES ON ENVIRONMENTAL CONCERN

    PubMed Central

    Pampel, Fred C.

    2013-01-01

    Objective Cross-national studies have found positive relationships of socioeconomic status (SES) with environmental concern at the individual level but have not systematically examined how the relationships may differ across nations. Such comparisons have relevance to identifying the generality of theories of postmaterialism, affluence, and global environmentalism. Methods This study specifies how the individual-level influence of SES varies across national contexts and tests predictions using four waves of the World Values Survey on up to 96 nations. Results The results show that SES is associated only weakly with environmental concern in lower income nations with poor environmental conditions but is associated strongly and positively in higher income nations with better environmental conditions. Conclusion SES has a contingent relationship with environmental concern such that the global environmentalism theory receives support for lower income nations, while the postmaterialism and affluence theories receive support for higher income nations. PMID:24678128

  1. Frontal neurons modulate memory retrieval across widely varying temporal scales.

    PubMed

    Zhang, Wen-Hua; Williams, Ziv M

    2015-06-01

    Once a memory has formed, it is thought to undergo a gradual transition within the brain from short- to long-term storage. This putative process, however, also poses a unique problem to the memory system in that the same learned items must also be retrieved across broadly varying time scales. Here, we find that neurons in the ventrolateral prefrontal cortex (VLPFC) of monkeys, an area interconnected with both temporal and frontal associative neocortical regions, signaled the need to alter between retrieval of memories formed at different times. These signals were most closely related to the time interval between initial learning and later retrieval, and did not correlate with task switch demands, novelty, or behavioral response. Consistent with these physiological findings, focal inactivation of the VLPFC led to a marked degradation in retrieval performance. These findings suggest that the VLPFC plays a necessary regulatory role in retrieving memories over different temporal scales. PMID:25979992

  2. Calculation of trajectories using constant and slowly varying functions

    NASA Technical Reports Server (NTRS)

    Culpepper, B. K.

    1971-01-01

    A method is presented for calculating trajectories for the restricted problem of three bodies which utilizes conic propagation of the state vector with frequency correction of position and velocity by means of a constant or slowly varying function. This method of calculating trajectories was applied to the planar circular restricted three body problem, the planar elliptic restricted problem, and the ephemeral restricted problem. Two methods (the refined method and the straight forward method) of determining the direction of the position correction are presented for the circular restricted problem and the elliptic restricted problem of three bodies. Only the straight forward method was used with the ephemeral restricted problem. The earth, the moon, and a space vehicle comprise the restricted three body model that is used.

  3. Calving rates at tidewater glaciers vary strongly with ocean temperature

    NASA Astrophysics Data System (ADS)

    Luckman, Adrian; Benn, Douglas I.; Cottier, Finlo; Bevan, Suzanne; Nilsen, Frank; Inall, Mark

    2015-10-01

    Rates of ice mass loss at the calving margins of tidewater glaciers (frontal ablation rates) are a key uncertainty in sea level rise projections. Measurements are difficult because mass lost is replaced by ice flow at variable rates, and frontal ablation incorporates sub-aerial calving, and submarine melt and calving. Here we derive frontal ablation rates for three dynamically contrasting glaciers in Svalbard from an unusually dense series of satellite images. We combine ocean data, ice-front position and terminus velocity to investigate controls on frontal ablation. We find that frontal ablation is not dependent on ice dynamics, nor reduced by glacier surface freeze-up, but varies strongly with sub-surface water temperature. We conclude that calving proceeds by melt undercutting and ice-front collapse, a process that may dominate frontal ablation where submarine melt can outpace ice flow. Our findings illustrate the potential for deriving simple models of tidewater glacier response to oceanographic forcing.

  4. Calving rates at tidewater glaciers vary strongly with ocean temperature.

    PubMed

    Luckman, Adrian; Benn, Douglas I; Cottier, Finlo; Bevan, Suzanne; Nilsen, Frank; Inall, Mark

    2015-01-01

    Rates of ice mass loss at the calving margins of tidewater glaciers (frontal ablation rates) are a key uncertainty in sea level rise projections. Measurements are difficult because mass lost is replaced by ice flow at variable rates, and frontal ablation incorporates sub-aerial calving, and submarine melt and calving. Here we derive frontal ablation rates for three dynamically contrasting glaciers in Svalbard from an unusually dense series of satellite images. We combine ocean data, ice-front position and terminus velocity to investigate controls on frontal ablation. We find that frontal ablation is not dependent on ice dynamics, nor reduced by glacier surface freeze-up, but varies strongly with sub-surface water temperature. We conclude that calving proceeds by melt undercutting and ice-front collapse, a process that may dominate frontal ablation where submarine melt can outpace ice flow. Our findings illustrate the potential for deriving simple models of tidewater glacier response to oceanographic forcing. PMID:26450063

  5. Bianchi Type V Cosmological Models with Varying Cosmological Term

    NASA Astrophysics Data System (ADS)

    Tiwari, R. K.; Singh, Rameshwar

    2015-05-01

    We have analyzed a new class of spatially homogeneous and anisotropic Bianchi type-V cosmological models with perfect fluid distribution in presence of time varying cosmological and gravitational constants in the framework of general relativity. Exact solutions of Einstein's field equations are obtained for two types of cosmologies viz. m ≠ 3 and m = 3 respectively. We propose an alternate variation law in which the anisotropy ( σ/ 𝜃) per unit expansion scalar ( 𝜃) is proportional to a function of scale factor R i.e. (where σ is a shear scalar) Tiwari (The African Review of Physics, 8, 437-447 2013). Physical properties of the models are discussed in detail. The models isotropize at late times. Some cosmological distance parameters for both the models have also been presented. We also discussed state finder parameters and observe that our solutions favor Λ C D M model.

  6. Flux Control in Glycolysis Varies Across the Tree of Life.

    PubMed

    Orlenko, Alena; Hermansen, Russell A; Liberles, David A

    2016-03-01

    Biochemical thought posits that rate-limiting steps (defined here as points of flux control) are strongly selected as points of pathway regulation and control and are thus expected to be evolutionarily conserved. Conversely, population genetic thought based upon the concepts of mutation-selection-drift balance at the pathway level might suggest variation in flux controlling steps over evolutionary time. Glycolysis, as one of the most conserved and best characterized pathways, was studied to evaluate its evolutionary conservation. The flux controlling step in glycolysis was found to vary over the tree of life. Further, phylogenetic analysis suggested at least 60 events of gene duplication and additional events of putative positive selection that might alter pathway kinetic properties. Together, these results suggest that even with presumed largely negative selection on pathway output on glycolysis, the co-evolutionary process under the hood is dynamic. PMID:26920685

  7. Pascual Jordan, Varying Gravity, and the Expanding Earth

    NASA Astrophysics Data System (ADS)

    Kragh, Helge

    2015-06-01

    In the 1950s, surprising links were proposed between cosmological theory and the geological and paleontological sciences. These links were mainly provided by Paul Dirac's hypothesis of 1937 that the gravitational constant G decreases with cosmic time. Pascual Jordan, famous for his pioneering contributions to quantum theory, took up Dirac's hypothesis; after the end of World War II, Jordan developed its geophysical consequences, concluding that the Earth is expanding. Much of Jordan's later scientific work focused on the expanding Earth and other aspects of the earth sciences relating to the varying- G hypothesis. This chapter in the history of science has received almost no attention from either scientists or historians. The article analyzes Jordan's cosmo-geological work in relation to the somewhat similar efforts of other "expansionists" in the period that led to the plate tectonic revolution in the earth sciences.

  8. Simulations of stretching a flexible polyelectrolyte with varying charge separation

    NASA Astrophysics Data System (ADS)

    Stevens, M. J.; Saleh, O. A.

    2016-07-01

    We calculated the force-extension curves for a flexible polyelectrolyte chain with varying charge separations by performing Monte Carlo simulations of a 5000 bead chain using a screened Coulomb interaction. At all charge separations, the force-extension curves exhibit a Pincus-like scaling regime at intermediate forces and a logarithmic regime at large forces. As the charge separation increases, the Pincus regime shifts to a larger range of forces and the logarithmic regime starts are larger forces. We also found that force-extension curve for the corresponding neutral chain has a logarithmic regime. Decreasing the diameter of bead in the neutral chain simulations removed the logarithmic regime, and the force-extension curve tends to the freely jointed chain limit. This result shows that only excluded volume is required for the high force logarithmic regime to occur.

  9. Time-varying priority queuing models for human dynamics

    NASA Astrophysics Data System (ADS)

    Jo, Hang-Hyun; Pan, Raj Kumar; Kaski, Kimmo

    2012-06-01

    Queuing models provide insight into the temporal inhomogeneity of human dynamics, characterized by the broad distribution of waiting times of individuals performing tasks. We theoretically study the queuing model of an agent trying to execute a task of interest, the priority of which may vary with time due to the agent's “state of mind.” However, its execution is disrupted by other tasks of random priorities. By considering the priority of the task of interest either decreasing or increasing algebraically in time, we analytically obtain and numerically confirm the bimodal and unimodal waiting time distributions with power-law decaying tails, respectively. These results are also compared to the updating time distribution of papers in arXiv.org and the processing time distribution of papers in Physical Review journals. Our analysis helps to understand human task execution in a more realistic scenario.

  10. Hybrid Percolation Transition in Cluster Merging Processes: Continuously Varying Exponents.

    PubMed

    Cho, Y S; Lee, J S; Herrmann, H J; Kahng, B

    2016-01-15

    Consider growing a network, in which every new connection is made between two disconnected nodes. At least one node is chosen randomly from a subset consisting of g fraction of the entire population in the smallest clusters. Here we show that this simple strategy for improving connection exhibits a more unusual phase transition, namely a hybrid percolation transition exhibiting the properties of both first-order and second-order phase transitions. The cluster size distribution of finite clusters at a transition point exhibits power-law behavior with a continuously varying exponent τ in the range 2<τ(g)≤2.5. This pattern reveals a necessary condition for a hybrid transition in cluster aggregation processes, which is comparable to the power-law behavior of the avalanche size distribution arising in models with link-deleting processes in interdependent networks. PMID:26824550

  11. Wildland-urban interface maps vary with purpose and context

    USGS Publications Warehouse

    Stewart, S.I.; Wilmer, B.; Hammer, R.B.; Aplet, G.H.; Hawbaker, T.J.; Miller, C.; Radeloff, V.C.

    2009-01-01

    Maps of the wildland-urban interface (WUI) are both policy tools and powerful visual images. Although the growing number of WUI maps serve similar purposes, this article indicates that WUI maps derived from the same data sets can differ in important ways related to their original intended application. We discuss the use of ancillary data in modifying census data to improve WUI maps and offer a cautionary note about this practice. A comparison of two WUI mapping approaches suggests that no single map is "best" because users' needs vary. The analysts who create maps are responsible for ensuring that users understand their purpose, data, and methods; map users are responsible for paying attention to these features and using each map accordingly. These considerations should apply to any analysis but are especially important to analyses of the WUI on which policy decisions will be made.

  12. Impacts of Varying Penetration of Distributed Resources with & without Volt/Var Control: Case Study of Varying Load Types

    SciTech Connect

    Rizy, D Tom; Li, Huijuan; Li, Fangxing; Xu, Yan; Adhikari, Sarina; Irminger, Philip

    2011-01-01

    This paper provides a follow-up to an earlier one on impacts of distributed energy resources (DR) on distribution feeders. As DR penetration level on the feeder increases, there can be impacts to distribution system/feeder capacity, line losses, and voltage regulation. These can vary as the penetration level reaches the capacity of the distribution feeder/system or loading. The question is how high of a DR level can be accommodated without any major changes to system operation, system design and protection. Our objective for this work was to address the question of how the DR impacts vary in regards to both DR voltage regulation capability and load mix. A dynamic analysis was used to focus on the impacts of DR with and without volt/var control with different load composition on the distribution feeder. The study considered an example 10MVA distribution feeder in which two inverter-based DRs were used to provide voltage regulation. The results due to DR without voltage regulation capability are compared with DR capable of providing local (at its bus) voltage regulation. The analysis was repeated for four different feeder load compositions consisting of (1) constant power, (2) constant impedance, (3) constant current and (4) ZIP (equal combination of previous three).

  13. CKD Prevalence Varies across the European General Population.

    PubMed

    Brück, Katharina; Stel, Vianda S; Gambaro, Giovanni; Hallan, Stein; Völzke, Henry; Ärnlöv, Johan; Kastarinen, Mika; Guessous, Idris; Vinhas, José; Stengel, Bénédicte; Brenner, Hermann; Chudek, Jerzy; Romundstad, Solfrid; Tomson, Charles; Gonzalez, Alfonso Otero; Bello, Aminu K; Ferrieres, Jean; Palmieri, Luigi; Browne, Gemma; Capuano, Vincenzo; Van Biesen, Wim; Zoccali, Carmine; Gansevoort, Ron; Navis, Gerjan; Rothenbacher, Dietrich; Ferraro, Pietro Manuel; Nitsch, Dorothea; Wanner, Christoph; Jager, Kitty J

    2016-07-01

    CKD prevalence estimation is central to CKD management and prevention planning at the population level. This study estimated CKD prevalence in the European adult general population and investigated international variation in CKD prevalence by age, sex, and presence of diabetes, hypertension, and obesity. We collected data from 19 general-population studies from 13 European countries. CKD stages 1-5 was defined as eGFR<60 ml/min per 1.73 m(2), as calculated by the CKD-Epidemiology Collaboration equation, or albuminuria >30 mg/g, and CKD stages 3-5 was defined as eGFR<60 ml/min per 1.73 m(2) CKD prevalence was age- and sex-standardized to the population of the 27 Member States of the European Union (EU27). We found considerable differences in both CKD stages 1-5 and CKD stages 3-5 prevalence across European study populations. The adjusted CKD stages 1-5 prevalence varied between 3.31% (95% confidence interval [95% CI], 3.30% to 3.33%) in Norway and 17.3% (95% CI, 16.5% to 18.1%) in northeast Germany. The adjusted CKD stages 3-5 prevalence varied between 1.0% (95% CI, 0.7% to 1.3%) in central Italy and 5.9% (95% CI, 5.2% to 6.6%) in northeast Germany. The variation in CKD prevalence stratified by diabetes, hypertension, and obesity status followed the same pattern as the overall prevalence. In conclusion, this large-scale attempt to carefully characterize CKD prevalence in Europe identified substantial variation in CKD prevalence that appears to be due to factors other than the prevalence of diabetes, hypertension, and obesity. PMID:26701975

  14. Performance predicting factors in prolonged exhausting exercise of varying intensity.

    PubMed

    Björklund, Glenn; Pettersson, Sofia; Schagatay, Erika

    2007-03-01

    Several endurance sports, e.g. road cycling, have a varying intensity profile during competition. At present, few laboratory tests take this intensity profile into consideration. Thus, the purpose of this study was to examine the prognostic value of heart rate (HR), lactate (La(-1)), potassium (K(+)), and respiratory exchange ratio (RER) performance at an exhausting cycling exercise with varying intensity. Eight national level cyclists performed two cycle tests each on a cycle ergometer: (1) a incremental test to establish VO(2max), maximum power (W (max)), and lactate threshold (VO(2LT)), and (2) a variable intensity protocol (VIP). Exercise intensity for the VIP was based upon the VO(2max) obtained during the incremental test. The VIP consisted of six high intense (HI) workloads at 90% of VO(2max) for 3 min each, interspersed by five middle intense (MI) workloads at 70% of VO(2max )for 6 min each. VO(2 )and HR were continuously measured throughout the tests. Venous blood samples were taken before, during, and after the test. Increases in HR, La(-), K(+), and RER were observed when workload changed from MI to HI workload (P < 0.05). Potassium and RER decreased after transition from HI to MI workloads (P < 0.05). There was a negative correlation between time to exhaustion and decrease in La(-) concentration during the first MI (r = -0.714; P = 0.047). Furthermore, time to exhaustion correlated with VO(2LT )calculated from the ramp test (r = 0.738; P = 0.037). Our results suggest that the magnitude of decrease of La(-1) between the first HI workload and the consecutive MI workload could predict performance during prolonged exercise with variable intensity. PMID:17186302

  15. Spall behavior of cast iron with varying microstructures

    NASA Astrophysics Data System (ADS)

    Plume, Gifford; Rousseau, Carl-Ernst

    2014-07-01

    The spall strength of cast iron with varying microstructures has been investigated using plate impact at moderate speed. Stress history measurements were made with manganin stress gauges embedded between the back face of the specimen and a low impedance polycarbonate backing. Five separate cast irons were tested. Four of these consisted of gray cast iron with graphite in flake form, with three classified as Type VII A2 and the fourth containing a bimodal distribution of Types VII A4 and VII D8. The fifth casting consisted of ductile cast iron with graphite in nodular form, classified as Type I, size class 5. The spall strength for the Type VII A2 gray cast irons varied between 40 and 370 MPa, and that of the additional gray cast iron, between 410 and 490 MPa. The spall strength of the ductile cast iron fell within the range of 0.94-1.2 GPa. It is shown that the spall strength is linked to the damage level at the spall plane, where an increased level of tensile stress is required to generate higher levels of damage. Post mortem analysis was performed on the recovered samples, revealing the graphite phase to be the primary factor governing the spall fracture of cast irons, where crack nucleation is directly correlated to the debonding of graphite from the metal matrix. The average length of graphite found within a casting is linked to the material's strength, where strength increases as a function of decreasing length. The morphology and mean free path of graphite precipitates further govern the subsequent coalescence of initiated cracks to form a complete fracture plane. In cases where graphite spacing is large, increased energy level is required to complete the fracture process. A secondary factor governing the spall fracture of cast irons has also been linked to the microstructure of the metal matrix, with pearlite yielding higher spall strengths than free ferrite.

  16. Modeling Motu Profile Response to Varying Wave and Storm Climate

    NASA Astrophysics Data System (ADS)

    Ortiz, A. C.; Ashton, A. D.; Donnelly, J. P.

    2014-12-01

    The atolls of the Pacific Ocean are low-lying landforms (less than 5m in elevation), typically consisting of reef-building corals often mounted by subaerial islets, or motu, which encircle a central lagoon. These motu, perched atop old coral reefs, typically consist of sand and gravel, and are sometimes anchored by relict geologic features (highstand coral reefs). Despite the vital role these islets play as home to terrestrial ecosystems and human infrastructure, the morphologic processes responsible for their formation and maintenance remain poorly understood. For example, although extreme events are hypothesized as a formation mechanism, motu are found in regions where hurricanes or tropical cyclones rarely occur and across varying storm gradients and frequency tracks. Here we use hydrodynamic and event-based morphodynamic modeling to better understand the role of storm events on the formation and evolution of motu. Using XBeach, a two-dimensional model of infragravity wave propagation and sediment transport, coupled with the coastal wave model, SWAN (Simulating WAves Nearshore), we simulate the hydrodynamic and morphodynamic impacts of storm events on the nearshore, beach, and backbarrier portions of atolls. We investigate the effect of different representative profile morphology, for example motu height or the distance from the reef edge to the motu, on storm response. We further test the effect of storm intensity and inundation scenarios (i.e. difference in elevated water levels of the lagoon and ocean) on storm hydrodynamics and morphologic change. Model scenarios are informed and compared to basin-wide analysis of the variation of atoll and motu characteristics, such as reef width, motu width, and motu spacing across the Pacific Ocean. Atoll morphologies and storm responses are affected by both geographic location and, locally, the shoreline orientation (compared to storm tracks). Combining these different model scenarios with measured morphometrics allows

  17. Slowly Varying Dilaton Cosmologies and Their Field Theory Duals

    SciTech Connect

    Awad, Adel; Das, Sumit R.; Ghosh, Archisman; Oh, Jae-Hyuk; Trivedi, Sandip P.; /Tata Inst. /Stanford U., ITP /SLAC

    2011-06-28

    We consider a deformation of the AdS{sub 5} x S{sup 5} solution of IIB supergravity obtained by taking the boundary value of the dilaton to be time dependent. The time dependence is taken to be slowly varying on the AdS scale thereby introducing a small parameter {epsilon}. The boundary dilaton has a profile which asymptotes to a constant in the far past and future and attains a minimum value at intermediate times. We construct the sugra solution to first non-trivial order in {epsilon}, and find that it is smooth, horizon free, and asymptotically AdS{sub 5} x S{sup 5} in the far future. When the intermediate values of the dilaton becomes small enough the curvature becomes of order the string scale and the sugra approximation breaks down. The resulting dynamics is analysed in the dual SU(N) gauge theory on S{sup 3} with a time dependent coupling constant which varies slowly. When N{epsilon} << 1, we find that a quantum adiabatic approximation is applicable, and use it to argue that at late times the geometry becomes smooth AdS{sub 5} x S{sup 5} again. When N{epsilon} >> 1, we formulate a classical adiabatic perturbation theory based on coherent states which arises in the large N limit. For large values of the tHooft coupling this reproduces the supergravity results. For small 'tHooft coupling the coherent state calculations become involved and we cannot reach a definite conclusion. We argue that the final state should have a dual description which is mostly smooth AdS5 space with the possible presence of a small black hole.

  18. Circular motion analysis of time-varying bioimpedance.

    PubMed

    Sanchez, B; Louarroudi, E; Rutkove, S B; Pintelon, R

    2015-11-01

    This paper presents a step forward towards the analysis of a linear periodically time-varying (PTV) bioimpedance ZPTV(jw, t), which is an important subclass of a linear time-varying (LTV) bioimpedance. Similarly to the Fourier coefficients of a periodic signal, a PTV impedance can be decomposed into frequency dependent impedance phasors, [Formula: see text], that are rotating with an angular speed of wr = 2πr/TZ. The vector length of these impedance phasors corresponds to the amplitude of the rth-order harmonic impedance |Zr( jw)| and the initial phase is given by Φr(w, t0) = [Symbol: see text]Zr( jw) + 2πrt0/TZ, with t0∈[0, T] being a time instant within the measurement time T. The impedance period TZ stands for the cycle length of the bio-system under investigation; for example, the elapsed time between two consecutive R-waves in the electrocardiogram or the breathing periodicity in case of the heart or lungs, respectively. First, it is demonstrated that the harmonic impedance phasor [Formula: see text], at a particular measured frequency k, can be represented by a rotating phasor, leading to the so-called circular motion analysis technique. Next, the two dimensional (2D) representation of the harmonic impedance phasors is then extended to a three-dimensional (3D) coordinate system by taking into account the frequency dependence. Finally, we introduce a new visualizing tool to summarize the frequency response behavior of ZPTV( jw, t) into a single 3D plot using the local Frenet-Serret frame. This novel 3D impedance representation is then compared with the 3D Nyquist representation of a PTV impedance. The concepts are illustrated through real measurements conducted on a PTV RC-circuit. PMID:26489699

  19. Product Binding Varies Dramatically between Processive and Nonprocessive Cellulase Enzymes

    SciTech Connect

    Bu, L.; Nimlos, M. R.; Shirts, M. R.; Stahlberg, J.; Himmel, M. E.; Crowley, M. F.; Beckham, G. T.

    2012-07-13

    Cellulases hydrolyze {beta}-1,4 glycosidic linkages in cellulose, which are among the most prevalent and stable bonds in Nature. Cellulases comprise many glycoside hydrolase families and exist as processive or nonprocessive enzymes. Product inhibition negatively impacts cellulase action, but experimental measurements of product-binding constants vary significantly, and there is little consensus on the importance of this phenomenon. To provide molecular level insights into cellulase product inhibition, we examine the impact of product binding on processive and nonprocessive cellulases by calculating the binding free energy of cellobiose to the product sites of catalytic domains of processive and nonprocessive enzymes from glycoside hydrolase families 6 and 7. The results suggest that cellobiose binds to processive cellulases much more strongly than nonprocessive cellulases. We also predict that the presence of a cellodextrin bound in the reactant site of the catalytic domain, which is present during enzymatic catalysis, has no effect on product binding in nonprocessive cellulases, whereas it significantly increases product binding to processive cellulases. This difference in product binding correlates with hydrogen bonding between the substrate-side ligand and the cellobiose product in processive cellulase tunnels and the additional stabilization from the longer tunnel-forming loops. The hydrogen bonds between the substrate- and product-side ligands are disrupted by water in nonprocessive cellulase clefts, and the lack of long tunnel-forming loops results in lower affinity of the product ligand. These findings provide new insights into the large discrepancies reported for binding constants for cellulases and suggest that product inhibition will vary significantly based on the amount of productive binding for processive cellulases on cellulose.

  20. Spectral Imaging from Uavs Under Varying Illumination Conditions

    NASA Astrophysics Data System (ADS)

    Hakala, T.; Honkavaara, E.; Saari, H.; Mäkynen, J.; Kaivosoja, J.; Pesonen, L.; Pölönen, I.

    2013-08-01

    Rapidly developing unmanned aerial vehicles (UAV) have provided the remote sensing community with a new rapidly deployable tool for small area monitoring. The progress of small payload UAVs has introduced greater demand for light weight aerial payloads. For applications requiring aerial images, a simple consumer camera provides acceptable data. For applications requiring more detailed spectral information about the surface, a new Fabry-Perot interferometer based spectral imaging technology has been developed. This new technology produces tens of successive images of the scene at different wavelength bands in very short time. These images can be assembled in spectral data cubes with stereoscopic overlaps. On field the weather conditions vary and the UAV operator often has to decide between flight in sub optimal conditions and no flight. Our objective was to investigate methods for quantitative radiometric processing of images taken under varying illumination conditions, thus expanding the range of weather conditions during which successful imaging flights can be made. A new method that is based on insitu measurement of irradiance either in UAV platform or in ground was developed. We tested the methods in a precision agriculture application using realistic data collected in difficult illumination conditions. Internal homogeneity of the original image data (average coefficient of variation in overlapping images) was 0.14-0.18. In the corrected data, the homogeneity was 0.10-0.12 with a correction based on broadband irradiance measured in UAV, 0.07-0.09 with a correction based on spectral irradiance measurement on ground, and 0.05-0.08 with a radiometric block adjustment based on image data. Our results were very promising, indicating that quantitative UAV based remote sensing could be operational in diverse conditions, which is prerequisite for many environmental remote sensing applications.

  1. Slowly varying dilaton cosmologies and their field theory duals

    SciTech Connect

    Awad, Adel; Das, Sumit R.; Ghosh, Archisman; Oh, Jae-Hyuk; Trivedi, Sandip P.

    2009-12-15

    We consider a deformation of the AdS{sub 5}xS{sup 5} solution of IIB supergravity obtained by taking the boundary value of the dilaton to be time dependent. The time dependence is taken to be slowly varying on the anti-de Sitter (AdS) scale thereby introducing a small parameter {epsilon}. The boundary dilaton has a profile which asymptotes to a constant in the far past and future and attains a minimum value at intermediate times. We construct the supergravity (sugra) solution to first nontrivial order in {epsilon}, and find that it is smooth, horizon-free, and asymptotically AdS{sub 5}xS{sup 5} in the far future. When the intermediate values of the dilaton becomes small enough the curvature becomes of order the string scale and the sugra approximation breaks down. The resulting dynamics is analyzed in the dual SU(N) gauge theory on S{sup 3} with a time dependent coupling constant which varies slowly. When N{epsilon}<<1, we find that a quantum adiabatic approximation is applicable, and use it to argue that at late times the geometry becomes smooth AdS{sub 5}xS{sup 5} again. When N{epsilon}>>1, we formulate a classical adiabatic perturbation theory based on coherent states which arises in the large N limit. For large values of the 't Hooft coupling this reproduces the supergravity results. For small 't Hooft coupling the coherent state calculations become involved and we cannot reach a definite conclusion. We argue that the final state should have a dual description which is mostly smooth AdS{sub 5} space with the possible presence of a small black hole.

  2. Spall behavior of cast iron with varying microstructures

    SciTech Connect

    Plume, Gifford; Rousseau, Carl-Ernst

    2014-07-21

    The spall strength of cast iron with varying microstructures has been investigated using plate impact at moderate speed. Stress history measurements were made with manganin stress gauges embedded between the back face of the specimen and a low impedance polycarbonate backing. Five separate cast irons were tested. Four of these consisted of gray cast iron with graphite in flake form, with three classified as Type VII A2 and the fourth containing a bimodal distribution of Types VII A4 and VII D8. The fifth casting consisted of ductile cast iron with graphite in nodular form, classified as Type I, size class 5. The spall strength for the Type VII A2 gray cast irons varied between 40 and 370 MPa, and that of the additional gray cast iron, between 410 and 490 MPa. The spall strength of the ductile cast iron fell within the range of 0.94–1.2 GPa. It is shown that the spall strength is linked to the damage level at the spall plane, where an increased level of tensile stress is required to generate higher levels of damage. Post mortem analysis was performed on the recovered samples, revealing the graphite phase to be the primary factor governing the spall fracture of cast irons, where crack nucleation is directly correlated to the debonding of graphite from the metal matrix. The average length of graphite found within a casting is linked to the material's strength, where strength increases as a function of decreasing length. The morphology and mean free path of graphite precipitates further govern the subsequent coalescence of initiated cracks to form a complete fracture plane. In cases where graphite spacing is large, increased energy level is required to complete the fracture process. A secondary factor governing the spall fracture of cast irons has also been linked to the microstructure of the metal matrix, with pearlite yielding higher spall strengths than free ferrite.

  3. Transient, spatially-varied recharge for groundwater modeling

    NASA Astrophysics Data System (ADS)

    Assefa, K.; Woodbury, A. D.

    2012-12-01

    This study is aimed at producing spatially and temporally varying groundwater recharge for transient groundwater modeling in a pilot watershed in the North Okanagan, Canada. The recharge modeling is undertaken by using a Richard's equation based finite element code (HYDRUS-1D) [Simunek et al., 2002], ArcGISTM [ESRI, 2011], ROSETTA [Schaap et al., 2001], in situ observations of soil temperature and soil moisture and a long term gridded climate data [Nielsen et al., 2010]. The public version of HYDUS-1D [Simunek et al., 2002] and another beta version with a detailed freezing and thawing module [Hansson et al., 2004] are first used to simulate soil temperature, snow pack and soil moisture over a one year experimental period. Statistical analysis of the results show both versions of HYDRUS-1D reproduce observed variables to the same degree. Correlation coefficients for soil temperature simulation were estimated at 0.9 and 0.8, at depths of 10 cm and 50 cm respectively; and for soil moisture, 0.8 and 0.6 at 10 cm and 50 cm respectively. This and other standard measures of model performance (root mean square error and average error) showed a promising performance of the HYDRUS-1D code in our pilot watershed. After evaluating model performance using field data and ROSETTA derived soil hydraulic parameters, the HYDRUS-1D code is coupled with ArcGISTM to produce spatially and temporally varying recharge maps throughout the Deep Creek watershed. Temporal and spatial analysis of 25 years daily recharge results at various representative points across the study watershed reveal significant temporal and spatial variations; average recharge estimated at 77.8 ± 50.8mm /year. This significant variation over the years, caused by antecedent soil moisture condition and climatic condition, illustrates the common flaw of assigning a constant percentage of precipitation throughout the simulation period. Groundwater recharge modeling has previously been attempted in the Okanagan Basin

  4. Transient,spatially-varied recharge for groundwater modeling

    NASA Astrophysics Data System (ADS)

    Assefa, Kibreab; Woodbury, Allan

    2013-04-01

    This study is aimed at producing spatially and temporally varying groundwater recharge for transient groundwater modeling in a pilot watershed in the North Okanagan, Canada. The recharge modeling is undertaken by using a Richard's equation based finite element code (HYDRUS-1D) [Simunek et al., 2002], ArcGISTM [ESRI, 2011], ROSETTA [Schaap et al., 2001], in situ observations of soil temperature and soil moisture and a long term gridded climate data [Nielsen et al., 2010]. The public version of HYDUS-1D [Simunek et al., 2002] and another beta version with a detailed freezing and thawing module [Hansson et al., 2004] are first used to simulate soil temperature, snow pack and soil moisture over a one year experimental period. Statistical analysis of the results show both versions of HYDRUS-1D reproduce observed variables to the same degree. Correlation coefficients for soil temperature simulation were estimated at 0.9 and 0.8, at depths of 10 cm and 50 cm respectively; and for soil moisture, 0.8 and 0.6 at 10 cm and 50 cm respectively. This and other standard measures of model performance (root mean square error and average error) showed a promising performance of the HYDRUS-1D code in our pilot watershed. After evaluating model performance using field data and ROSETTA derived soil hydraulic parameters, the HYDRUS-1D code is coupled with ArcGISTM to produce spatially and temporally varying recharge maps throughout the Deep Creek watershed. Temporal and spatial analysis of 25 years daily recharge results at various representative points across the study watershed reveal significant temporal and spatial variations; average recharge estimated at 77.8 ± 50.8mm /year. This significant variation over the years, caused by antecedent soil moisture condition and climatic condition, illustrates the common flaw of assigning a constant percentage of precipitation throughout the simulation period. Groundwater recharge modeling has previously been attempted in the Okanagan Basin

  5. Vibration condition monitoring of planetary gearbox under varying external load

    NASA Astrophysics Data System (ADS)

    Bartelmus, W.; Zimroz, R.

    2009-01-01

    The paper shows that for condition monitoring of planetary gearboxes it is important to identify the external varying load condition. In the paper, systematic consideration has been taken of the influence of many factors on the vibration signals generated by a system in which a planetary gearbox is included. These considerations give the basis for vibration signal interpretation, development of the means of condition monitoring, and for the scenario of the degradation of the planetary gearbox. Real measured vibration signals obtained in the industrial environment are processed. The signals are recorded during normal operation of the diagnosed objects, namely planetary gearboxes, which are a part of the driving system used in a bucket wheel excavator, used in lignite mines. It is found that a planetary gearbox in bad condition is more susceptible to load than a gearbox in good condition. The estimated load time traces obtained by a demodulation process of the vibration acceleration signal for a planetary gearbox in good and bad conditions are given. It has been found that the most important factor of the proper planetary gearbox condition is connected with perturbation of arm rotation, where an arm rotation gives rise to a specific vibration signal whose properties are depicted by a short-time Fourier transform (STFT) and Wigner-Ville distribution presented as a time frequency map. The paper gives evidence that there are two dominant low-frequency causes that influence vibration signal modulation, i.e. the varying load, which comes from the nature of the bucket wheel digging process, and the arm/carrier rotation. These two causes determine the condition of the planetary gearboxes considered. Typical local faults such as cracking or breakage of a gear tooth, or local faults in rolling element bearings, have not been found in the cases considered. In real practice, local faults of planetary gearboxes have not occurred, but heavy destruction of planetary gearboxes have

  6. Time-varying coherence function for atrial fibrillation detection.

    PubMed

    Lee, Jinseok; Nam, Yunyoung; McManus, David D; Chon, Ki H

    2013-10-01

    We introduce a novel method for the automatic detection of atrial fibrillation (AF) using time-varying coherence functions (TVCF). The TVCF is estimated by the multiplication of two time-varying transfer functions (TVTFs). The two TVTFs are obtained using two adjacent data segments with one data segment as the input signal and the other data segment as the output to produce the first TVTF; the second TVTF is produced by reversing the input and output signals. We found that the resultant TVCF between two adjacent normal sinus rhythm (NSR) segments shows high coherence values (near 1) throughout the entire frequency range. However, if either or both segments partially or fully contain AF, the resultant TVCF is significantly lower than 1. When TVCF was combined with Shannon entropy (SE), we obtained even more accurate AF detection rate of 97.9% for the MIT-BIH atrial fibrillation (AF) database (n = 23) with 128 beat segments. The detection algorithm was tested on four databases using 128 beat segments: the MIT-BIH AF database, the MIT-BIH NSR database ( n = 18), the MIT-BIH Arrhythmia database ( n = 48), and a clinical 24-h Holter AF database ( n = 25). Using the receiver operating characteristic curves from the combination of TVCF and SE, we obtained a sensitivity of 98.2% and specificity of 97.7% for the MIT-BIH AF database. For the MIT-BIH NSR database, we found a specificity of 99.7%. For the MIT-BIH Arrhythmia database, the sensitivity and specificity were 91.1% and 89.7%, respectively. For the clinical database (24-h Holter data), the sensitivity and specificity were 92.3% and 93.6%, respectively. We also found that a short segment (12 beats) also provided accurate AF detection for all databases: sensitivity of 94.7% and specificity of 90.4% for the MIT-BIH AF, specificity of 94.4% for the MIT-BIH-NSR, the sensitivity of 92.4% and specificity of 84.1% for the MIT-BIH arrhythmia, and sensitivity of 93.9% and specificity of 84.4% for the clinical database. The

  7. Economic strategies of plant absorptive roots vary with root diameter

    NASA Astrophysics Data System (ADS)

    Kong, D. L.; Wang, J. J.; Kardol, P.; Wu, H. F.; Zeng, H.; Deng, X. B.; Deng, Y.

    2016-01-01

    Plant roots typically vary along a dominant ecological axis, the root economics spectrum, depicting a tradeoff between resource acquisition and conservation. For absorptive roots, which are mainly responsible for resource acquisition, we hypothesized that root economic strategies differ with increasing root diameter. To test this hypothesis, we used seven plant species (a fern, a conifer, and five angiosperms from south China) for which we separated absorptive roots into two categories: thin roots (thickness of root cortex plus epidermis < 247 µm) and thick roots. For each category, we analyzed a range of root traits related to resource acquisition and conservation, including root tissue density, different carbon (C), and nitrogen (N) fractions (i.e., extractive, acid-soluble, and acid-insoluble fractions) as well as root anatomical traits. The results showed significant relationships among root traits indicating an acquisition-conservation tradeoff for thin absorptive roots while no such trait relationships were found for thick absorptive roots. Similar results were found when reanalyzing data of a previous study including 96 plant species. The contrasting economic strategies between thin and thick absorptive roots, as revealed here, may provide a new perspective on our understanding of the root economics spectrum.

  8. Evolutionary patterns of genic DNA methylation vary across land plants.

    PubMed

    Takuno, Shohei; Ran, Jin-Hua; Gaut, Brandon S

    2016-01-01

    Little is known about patterns of genic DNA methylation across the plant kingdom or about the evolutionary processes that shape them. To characterize gene-body methylation (gbM) within exons, we have gathered single-base resolution methylome data that span the phylogenetic breadth of land plants. We find that a basal land plant, Marchantia polymorpha, lacks any evident signal of gbM within exons, but conifers have high levels of both CG and CHG (where H is A, C or T) methylation in expressed genes. To begin to understand the evolutionary forces that shape gbM, we first tested for correlations in methylation levels across orthologues(1,2). Genic CG methylation levels, but not CHG or CHH levels, are correlated across orthologues for species as distantly related as ferns and angiosperms. Hence, relative levels of CG methylation are a consistent property across genes, even for species that diverged ∼400 million years ago(3,4). In contrast, genic CHG methylation correlates with genome size, suggesting that the host epigenetic response to transposable elements also affects genes. Altogether, our data indicate that the evolutionary forces acting on DNA methylation vary substantially across species, genes and methylation contexts. PMID:27249194

  9. Acoustic thermometric reconstruction of a time-varying temperature profile

    NASA Astrophysics Data System (ADS)

    Anosov, A. A.; Kazanskii, A. S.; Mansfel'd, A. D.; Sharakshane, A. S.

    2016-03-01

    The time-varying temperature profiles were reconstructed in an experiment using a thermal acoustic radiation receiving array containing 14 sensors. The temperature was recovered by performing similar experiments using plasticine, as well as in vivo with a human hand. Plasticine preliminarily heated up to 36.5°C and a human hand were placed into water for 50 s at a temperature of 20°C. The core temperature of the plasticine was independently measured using thermocouples. The spatial resolution of the reconstruction in the lateral direction was determined by the distance between neighboring sensors and was equal to10 mm; the averaging time was 10 s. The error in reconstructing the core temperature determined in the experiment with plasticine was 0.5 K. The core temperature of the hand changed with time (in 50 s it decreased from 35 to 34°C) and space (the mean square deviation was 1.5 K). The experiment with the hand revealed that multichannel detection of thermal acoustic radiation using a compact 45 × 36 mm array to reconstruct the temperature profile could be performed during medical procedures.

  10. Ultrasound Background Cancellation Based on Time-Varying Synthesis

    NASA Astrophysics Data System (ADS)

    Mijares-Chan, Jose Juan; Thomas, Gabriel

    Fault detection based on ultrasonic imaging is a common technique used in non destructive testing. Correct interpretation of the scans requires training so that responses from unwanted echoes such as the background are discriminated from echoes corresponding to faults. Thus, enhancement in the form of displaying the desired echoes without the background response can offer an advantage for detection or further quantification of the fault. A fast way to achieve this goal and detect the background signatures and isolate them from the fault ones is to use time-frequency analysis. When time-varying filtering is used, the tendency is to recover the echoes coming from the faults. These echoes are reconstructed with no phase distortion because the system is linear and the scans c in which the background was cancelled in different specimens where faults were located very close to the surface buried within the initial pulse response and close to each other deeper in the specimen. This technique uses a single reference scan fast enough so that to finish the processing earlier than the time required to acquire a new scan.

  11. Spatially Varying Spectrally Thresholds for MODIS Cloud Detection

    NASA Technical Reports Server (NTRS)

    Haines, S. L.; Jedlovec, G. J.; Lafontaine, F.

    2004-01-01

    The EOS science team has developed an elaborate global MODIS cloud detection procedure, and the resulting MODIS product (MOD35) is used in the retrieval process of several geophysical parameters to mask out clouds. While the global application of the cloud detection approach appears quite robust, the product has some shortcomings on the regional scale, often over determining clouds in a variety of settings, particularly at night. This over-determination of clouds can cause a reduction in the spatial coverage of MODIS derived clear-sky products. To minimize this problem, a new regional cloud detection method for use with MODIS data has been developed at NASA's Global Hydrology and Climate Center (GHCC). The approach is similar to that used by the GHCC for GOES data over the continental United States. Several spatially varying thresholds are applied to MODIS spectral data to produce a set of tests for detecting clouds. The thresholds are valid for each MODIS orbital pass, and are derived from 20-day composites of GOES channels with similar wavelengths to MODIS. This paper and accompanying poster will introduce the GHCC MODIS cloud mask, provide some examples, and present some preliminary validation.

  12. Magnetic field components in a sinusoidally varying helical wiggler

    SciTech Connect

    Caspi, S.

    1994-07-27

    One may be interested in a pure multipole magnetic field (i.e., proportional to sin(n{theta}) or cos(n{theta}) whose strength varies purely as a Fourier sinusoidal series of the longitudinal coordinate z (say proportional to cos{sub L}/{sup (2m-1){pi}z}), where L denotes the half-period of the wiggler and m=1,2,3{hor_ellipsis}). Associated with such a z variation, there necessarily will be presented a z component of magnetic field which in the source-free region, in fact, will give rise to both normal and skew transverse fields associated with the functions A{sub n}(z) and {Angstrom}{sub n}(z) as expressed in Reference{sup bc}. In this note the field components and expression for the scalar potential both inside and outside a thin pure winding surface are included with additional contributions from a possible high permeable shield. It is also shown that for a pure dipole case of n=1 and pure axial variation of m=1 the transverse field can be derived from a simple two dimensional field.

  13. NARAC SOFTWARE QUALITY ASSURANCE: ADAPTING FORMALISM TO MEET VARYING NEEDS

    SciTech Connect

    Walker, H; Nasstrom, J S; Homann, S G

    2007-11-20

    The National Atmospheric Release Advisory Center (NARAC) provides tools and services that predict and map the spread of hazardous material accidentally or intentionally released into the atmosphere. NARAC is a full function system that can meet a wide range of needs with a particular focus on emergency response. The NARAC system relies on computer software in the form of models of the atmosphere and related physical processes supported by a framework for data acquisition and management, user interface, visualization, communications and security. All aspects of the program's operations and research efforts are predicated to varying degrees on the reliable and correct performance of this software. Consequently, software quality assurance (SQA) is an essential component of the NARAC program. The NARAC models and system span different levels of sophistication, fidelity and complexity. These different levels require related but different approaches to SQA. To illustrate this, two different levels of software complexity are considered in this paper. As a relatively simple example, the SQA procedures that are being used for HotSpot, a straight-line Gaussian model focused on radiological releases, are described. At the other extreme, the SQA issues that must be considered and balanced for the more complex NARAC system are reviewed.

  14. Deblurring for spatial and temporal varying motion with optical computing

    NASA Astrophysics Data System (ADS)

    Xiao, Xiao; Xue, Dongfeng; Hui, Zhao

    2016-05-01

    A way to estimate and remove spatially and temporally varying motion blur is proposed, which is based on an optical computing system. The translation and rotation motion can be independently estimated from the joint transform correlator (JTC) system without iterative optimization. The inspiration comes from the fact that the JTC system is immune to rotation motion in a Cartesian coordinate system. The work scheme of the JTC system is designed to keep switching between the Cartesian coordinate system and polar coordinate system in different time intervals with the ping-pang handover. In the ping interval, the JTC system works in the Cartesian coordinate system to obtain a translation motion vector with optical computing speed. In the pang interval, the JTC system works in the polar coordinate system. The rotation motion is transformed to the translation motion through coordinate transformation. Then the rotation motion vector can also be obtained from JTC instantaneously. To deal with continuous spatially variant motion blur, submotion vectors based on the projective motion path blur model are proposed. The submotion vectors model is more effective and accurate at modeling spatially variant motion blur than conventional methods. The simulation and real experiment results demonstrate its overall effectiveness.

  15. Partial migration: growth varies between resident and migratory fish.

    PubMed

    Gillanders, Bronwyn M; Izzo, Christopher; Doubleday, Zoë A; Ye, Qifeng

    2015-03-01

    Partial migration occurs in many taxa and ecosystems and may confer survival benefits. Here, we use otolith chemistry data to determine whether fish from a large estuarine system were resident or migratory, and then examine whether contingents display differences in modelled growth based on changes in width of otolith growth increments. Sixty-three per cent of fish were resident based on Ba : Ca of otoliths, with the remainder categorized as migratory, with both contingents distributed across most age/size classes and both sexes, suggesting population-level bet hedging. Migrant fish were in slightly better condition than resident fish based on Fulton's K condition index. Migration type (resident versus migratory) was 56 times more likely to explain variation in growth than a model just incorporating year- and age-related growth trends. While average growth only varied slightly between resident and migratory fish, year-to-year variation was significant. Such dynamism in growth rates likely drives persistence of both life-history types. The complex relationships in growth between contingents suggest that management of species exhibiting partial migration is challenging, especially in a world subject to a changing climate. PMID:25788490

  16. Fluctuation-Dissipation Relation for Systems with Spatially Varying Friction

    NASA Astrophysics Data System (ADS)

    Farago, Oded; Grønbech-Jensen, Niels

    2014-09-01

    When a particle diffuses in a medium with spatially dependent friction coefficient at constant temperature , it drifts toward the low friction end of the system even in the absence of any real physical force . This phenomenon, which has been previously studied in the context of non-inertial Brownian dynamics, is termed "spurious drift", although the drift is real and stems from an inertial effect taking place at the short temporal scales. Here, we study the diffusion of particles in inhomogeneous media within the framework of the inertial Langevin equation. We demonstrate that the quantity which characterizes the dynamics with non-uniform is not the displacement of the particle (where is the initial position), but rather , where is the primitive function of . We derive expressions relating the mean and variance of to , , and the duration of the dynamics . For a constant friction coefficient , these expressions reduce to the well known forms of the force-drift and fluctuation-dissipation relations. We introduce a very accurate method for Langevin dynamics simulations in systems with spatially varying , and use the method to validate the newly derived expressions.

  17. Innovation diffusion on time-varying activity driven networks

    NASA Astrophysics Data System (ADS)

    Rizzo, Alessandro; Porfiri, Maurizio

    2016-01-01

    Since its introduction in the 1960s, the theory of innovation diffusion has contributed to the advancement of several research fields, such as marketing management and consumer behavior. The 1969 seminal paper by Bass [F.M. Bass, Manag. Sci. 15, 215 (1969)] introduced a model of product growth for consumer durables, which has been extensively used to predict innovation diffusion across a range of applications. Here, we propose a novel approach to study innovation diffusion, where interactions among individuals are mediated by the dynamics of a time-varying network. Our approach is based on the Bass' model, and overcomes key limitations of previous studies, which assumed timescale separation between the individual dynamics and the evolution of the connectivity patterns. Thus, we do not hypothesize homogeneous mixing among individuals or the existence of a fixed interaction network. We formulate our approach in the framework of activity driven networks to enable the analysis of the concurrent evolution of the interaction and individual dynamics. Numerical simulations offer a systematic analysis of the model behavior and highlight the role of individual activity on market penetration when targeted advertisement campaigns are designed, or a competition between two different products takes place.

  18. Temporal-varying failures of nodes in networks

    NASA Astrophysics Data System (ADS)

    Knight, Georgie; Cristadoro, Giampaolo; Altmann, Eduardo G.

    2015-08-01

    We consider networks in which random walkers are removed because of the failure of specific nodes. We interpret the rate of loss as a measure of the importance of nodes, a notion we denote as failure centrality. We show that the degree of the node is not sufficient to determine this measure and that, in a first approximation, the shortest loops through the node have to be taken into account. We propose approximations of the failure centrality which are valid for temporal-varying failures, and we dwell on the possibility of externally changing the relative importance of nodes in a given network by exploiting the interference between the loops of a node and the cycles of the temporal pattern of failures. In the limit of long failure cycles we show analytically that the escape in a node is larger than the one estimated from a stochastic failure with the same failure probability. We test our general formalism in two real-world networks (air-transportation and e-mail users) and show how communities lead to deviations from predictions for failures in hubs.

  19. Modeling spectrally varying resolution in broadband imaging systems

    NASA Astrophysics Data System (ADS)

    Cota, Stephen A.; Schnee, Scott L.; Loverro, Adam L.

    2015-09-01

    The remote sensing system engineering process often makes use of modeling and simulation tools to flow down specifications to subsystems and components, and/or to predict performance given a particular set of defined capabilities. A persistent question in the development and use of such tools is that of appropriate level of fidelity. In this paper we look at one problem area encountered in the simulation of panchromatic and other broadband imaging systems, that of accounting for spectrally varying resolution over the band. An established method for treating this variation is that of the polychromatic optical transfer function (OTF), but this technique imposes a measure of complexity on the simulation tool software architecture, as well as on users who must subsequently interact with it. We present a methodology for assessing the required level of fidelity for this problem and show that under some conditions it appears possible to forgo the polychromatic OTF formalism, or else to treat it with less than full rigor, with minimal loss in accuracy.

  20. Size matters: Perceived depth magnitude varies with stimulus height.

    PubMed

    Tsirlin, Inna; Wilcox, Laurie M; Allison, Robert S

    2016-06-01

    Both the upper and lower disparity limits for stereopsis vary with the size of the targets. Recently, Tsirlin, Wilcox, and Allison (2012) suggested that perceived depth magnitude from stereopsis might also depend on the vertical extent of a stimulus. To test this hypothesis we compared apparent depth in small discs to depth in long bars with equivalent width and disparity. We used three estimation techniques: a virtual ruler, a touch-sensor (for haptic estimates) and a disparity probe. We found that depth estimates were significantly larger for the bar stimuli than for the disc stimuli for all methods of estimation and different configurations. In a second experiment, we measured perceived depth as a function of the height of the bar and the radius of the disc. Perceived depth increased with increasing bar height and disc radius suggesting that disparity is integrated along the vertical edges. We discuss size-disparity correlation and inter-neural excitatory connections as potential mechanisms that could account for these results. PMID:27180656

  1. Modeling of Time Varying Slag Flow in Coal Gasifiers

    SciTech Connect

    Pilli, Siva Prasad; Johnson, Kenneth I.; Williford, Ralph E.; Sundaram, S. K.; Korolev, Vladimir N.; Crum, Jarrod V.

    2008-08-30

    There is considerable interest within government agencies and the energy industries across the globe to further advance the clean and economical conversion of coal into liquid fuels to reduce our dependency on imported oil. To date, advances in these areas have been largely based on experimental work. Although there are some detailed systems level performance models, little work has been done on numerical modeling of the component level processes. If accurate models are developed, then significant R&D time might be saved, new insights into the process might be gained, and some good predictions of process or performance can be made. One such area is the characterization of slag deposition and flow on the gasifier walls. Understanding slag rheology and slag-refractory interactions is critical to design and operation of gasifiers with extended refractory lifetimes and also to better control of operating parameters so that the overall gasifier performance with extended service life can be optimized. In the present work, the literature on slag flow modeling was reviewed and a model similar to Seggiani’s was developed to simulate the time varying slag accumulation and flow on the walls of a Prenflo coal gasifier. This model was further extended and modified to simulate a refractory wall gasifier including heat transfer through the refractory wall with flowing slag in contact with the refractory. The model was used to simulate temperature dependent slag flow using rheology data from our experimental slag testing program. These modeling results as well as experimental validation are presented.

  2. External Field QED on Cauchy Surfaces for Varying Electromagnetic Fields

    NASA Astrophysics Data System (ADS)

    Deckert, D.-A.; Merkl, F.

    2016-03-01

    The Shale-Stinespring Theorem (J Math Mech 14:315-322, 1965) together with Ruijsenaar's criterion (J Math Phys 18(4):720-737, 1977) provide a necessary and sufficient condition for the implementability of the evolution of external field quantum electrodynamics between constant-time hyperplanes on standard Fock space. The assertion states that an implementation is possible if and only if the spatial components of the external electromagnetic four-vector potential {A_μ} are zero. We generalize this result to smooth, space-like Cauchy surfaces and, for general {A_μ} , show how the second-quantized Dirac evolution can always be implemented as a map between varying Fock spaces. Furthermore, we give equivalence classes of polarizations, including an explicit representative, that give rise to those admissible Fock spaces. We prove that the polarization classes only depend on the tangential components of {A_μ} w.r.t. the particular Cauchy surface, and show that they behave naturally under Lorentz and gauge transformations.

  3. Pollinator effectiveness varies with experimental shifts in flowering time

    PubMed Central

    Rafferty, Nicole E.; Ives, Anthony R.

    2013-01-01

    The earlier flowering times exhibited by many plant species are a conspicuous sign of climate change. Altered phenologies have caused concern that species could suffer population declines if they flower at times when effective pollinators are unavailable. For two perennial wildflowers, Tradescantia ohiensis and Asclepias incarnata, we used an experimental approach to explore how changing phenology affects the taxonomic composition of the pollinator assemblage and the effectiveness of individual pollinator taxa. After finding in the previous year that fruit set varied with flowering time, we manipulated flowering onset in greenhouses, placed plants in the field over the span of five weeks, and measured pollinator effectiveness as the number of seeds produced after a single visit to a flower. The average effectiveness of pollinators and the expected rates of pollination success were lower for plants of both species flowering earlier than for plants flowering at historical times, suggesting there could be reproductive costs to earlier flowering. Whereas for A. incarnata, differences in average seed set among weeks were due primarily to changes in the composition of the pollinator assemblage, the differences for T. ohiensis were driven by the combined effects of compositional changes and increases over time in the effectiveness of some pollinator taxa. Both species face the possibility of temporal mismatch between the availability of the most effective pollinators and the onset of flowering, and changes in the effectiveness of individual pollinator taxa through time may add an unexpected element to the reproductive consequences of such mismatches. PMID:22690631

  4. Instability of low viscosity elliptic jets with varying aspect ratio

    NASA Astrophysics Data System (ADS)

    Kulkarni, Varun

    2011-11-01

    In this work an analytical description of capillary instability of liquid elliptic jets with varying aspect ratio is presented. Linear stability analysis in the long wave approximation with negligible gravitational effects is employed. Elliptic cylindrical coordinate system is used and perturbation velocity potential substituted in the Laplace equation to yield Mathieu and Modified Mathieu differential equations. The dispersion relation for elliptical orifices of any aspect ratio is derived and validated for axisymmetric disturbances with m = 0, in the limit of aspect ratio, μ = 1 , i.e. the case of a circular jet. As Mathieu functions and Modified Mathieu function solutions converge to Bessel's functions in this limit the Rayleigh-Plateau instability criterion is met. Also, stability of solutions corresponding to asymmetric disturbances for the kink mode, m = 1 and flute modes corresponding to m >= 2 is discussed. Experimental data from earlier works is used to compare observations made for elliptical orifices with μ ≠ 1 . This novel approach aims at generalizing the results pertaining to cylindrical jets with circular cross section leading to better understanding of breakup in liquid jets of various geometries.

  5. Lumbar spinal loads vary with body height and weight.

    PubMed

    Han, Kap-Soo; Rohlmann, Antonius; Zander, Thomas; Taylor, William R

    2013-07-01

    Knowledge about spinal loading is required for designing and preclinical testing of spinal implants. It is assumed that loading of the spine depends upon body weight and height, as well as on the spine level, but a direct measurement of the loading conditions throughout the spine is not yet possible. Here, computer models can allow an estimation of the forces and moments acting in the spine. The objective of the present study was to calculate spinal loads for different postures and activities at several levels of the thoracolumbar spine for various combinations of body height and weight. A validated musculoskeletal model, together with commercially available software (AnyBody Technology), were used to calculate the segmental loads acting on the centre of the upper endplate of the vertebrae T12 to L5. The body height was varied between 150 and 200 cm and the weight between 50 and 120 kg. The loads were determined for five standard static postures and three lifting tasks. The resultant forces and moments increased approximately linearly with increasing body weight. The body height had a nearly linear effect on the spinal loads, but in almost all loading cases, the effect on spinal loads was stronger for variation of body weight than of body height. Spinal loads generally increased from cranial to caudal. The presented data now allow the estimation of the spinal load during activities of daily living on a subject specific basis, if body height and weight are known. PMID:23040051

  6. Device for producing a fluid stream of varying composition

    DOEpatents

    Moss, Owen R.; Clark, Mark L.; Rossignol, E. John

    1982-01-01

    A device for producing a fluid stream of varying composition comprises a chamber having an inlet at one end and outlet at the other. Between the inlet and outlet there are substantially planar pans or baffles positioned normal to the bulk flow of fluid between the inlet and the outlet. These pans are arranged in pairs. Each pan, except those of the pair most remote from the inlet, is spaced from the walls of the chamber to permit air to flow past it. The pans of each pair are also spaced from each other, in a direction parallel to their planes, leaving an empty space along the mid-plane of the chamber. This produces a circulation and mixing of fluid between the pairs of pans or baffles. A secondary stream of fluid is introduced between two pairs of baffles in the intermediate portion of the chamber, so that the composition of the fluid is different in the portion adjacent to the outlet and the portion adjacent to the inlet. In a specific embodiment, the device is an exposure chamber for experimental animals, and the pans or baffles are catch pans for excrement.

  7. Strawberry Cultivars Vary in their Resistance to Northern Lesion Nematode

    PubMed Central

    Dale, Adam; Potter, John W.

    1998-01-01

    The genetic diversity of commercial cultivars of strawberry Fragaria x ananassa from various parentages, as expressed by their resistance to the northem lesion nematode Pratylenchus penetrans, was evaluated in nematode-infested field plots for two growing seasons. Data taken for each plant in each season included soil nematode Pi and Pf, end-of-season nematode numbers in each entire root system, and end-of-season fresh and dry top weight and whole root system weight. Resistance was estimated using an index of the nematode load on the plant: Nematode load = {n(root) + (200 × n[soil])}/{root dry weight} where n (root) = number of nematodes in the root, n [soil] = number of nematodes in 50 g of nonfumigated soil, and 200 is a multiplier to convert the soil nematode count to a 10-kg basis. Nineteen strawberry cultivars varied in their resistance to the northern lesion nematode, from a mean load of 382 nematodes/plant for Pajaro to 1,818 nematodes/plant for Veestar. This variability could be related to the original family groupings, with the most resistant cultivars related to Lassen and the least resistant to Sparkle x Valentine. PMID:19274249

  8. Thickness-varying flexible plunging fins swim more efficiently

    NASA Astrophysics Data System (ADS)

    Li, Yuanda; Yeh, Peter; Alexeev, Alexander

    2015-11-01

    We use three dimensional computer simulations to probe the hydrodynamics of oscillating flexible fins with varying thickness. The fin is modeled as an elastic rectangular plate with the thickest section at the leading edge, decreasing linearly until the trailing edge. The plate is modeled as infinitely thin, and we assume that the thickest part of the fin is much smaller compared to its other length scales. Therefore, we simulate the swimmer as two dimensional plate and introduce the effect of the thickness gradient by including an appropriate mass gradient and stiffness gradient along the length of the plate. The flexible fin is actuated by a plunging motion at its leading edge. We evaluate the performance of the swimmer by measuring the steady state thrust, free swimming velocity, input power, and swimming economy as a function of driving frequency and the magnitude of the thickness gradient. We find a wideband frequency range in which the swimming economy is increased as compared to a uniformly thick swimmer. These findings may shed insight into some of the physical mechanisms that allow fish to have high swimming efficiency.

  9. Invited Commentary: Taking Advantage of Time-Varying Neighborhood Environments

    PubMed Central

    Lovasi, Gina S.; Goldsmith, Jeff

    2014-01-01

    Neighborhood built environment characteristics may encourage physical activity, but previous literature on the topic has been critiqued for its reliance on cross-sectional data. In this issue of the Journal, Knuiman et al. (Am J Epidemiol. 2014;180(5):453–461) present longitudinal analyses of built environment characteristics as predictors of neighborhood transportation walking. We take this opportunity to comment on self-selection, exposure measurement, outcome form, analyses, and future directions. The Residential Environments (RESIDE) Study follows individuals as they relocate into new housing. The outcome, which is neighborhood transportation walking, has several important limitations with regards to public health relevance, dichotomization, and potential bias. Three estimation strategies were pursued: marginal modeling, random-effects modeling, and fixed-effects modeling. Knuiman et al. defend fixed-effects modeling as the one that most effectively controls for unmeasured time-invariant confounders, and it will do so as long as confounders have a constant effect over time. Fixed-effects modeling requires no distributional assumptions regarding the heterogeneity of subject-specific effects. Associations of time-varying neighborhood characteristics with walking are interpreted at the subject level for both fixed- and random-effects models. Cross-sectional data have set the stage for the next generation of neighborhood research, which should leverage longitudinal changes in both place and health behaviors. Careful interpretation is warranted as longitudinal data become available for analysis. PMID:25117659

  10. Varied line-space gratings: past, present and future

    SciTech Connect

    Hettrick, M.C.

    1985-08-01

    A classically ruled diffraction grating consists of grooves which are equidistant, straight and parallel. Conversely, the so-called ''holographic'' grating (formed by the interfering waves of coherent visible light), although severely constrained by the recording wavelength and recording geometry, has grooves which are typically neither equidistant, straight nor parallel. In contrast, a varied line-space (VLS) grating, in common nomenclature, is a design in which the groove positions are relatively unconstrained yet possess sufficient symmetry to permit mechanical ruling. Such seemingly exotic gratings are no longer only a theoretical curiosity, but have been ruled and used in a wide variety of applications. These include: (1) aberration-corrected normal incidence concave gratings for Seya-Namioka monochromators and optical de-multiplexers, (2) flat-field grazing incidence concave gratings for plasma diagnostics, (3) aberration-corrected grazing incidence plane gratings for space-borne spectrometers, (4) focusing grazing incidence plane grating for synchrotron radiation monochromators, and (5) wavefront generators for visible interferometry of optical surfaces (particularly aspheres). Future prospects of VLS gratings as dispersing elements, wavefront correctors and beamsplitters appear promising. The author discusses the history of VLS gratings, their present applications, and their potential in the future. 61 refs., 24 figs.

  11. Equestrian trauma: injury patterns vary among age groups.

    PubMed

    Bilaniuk, Jaroslaw W; Adams, John M; DiFazio, Louis T; Siegel, Brian K; Allegra, John R; Luján, Juan J; Durling-Grover, Renay; Pawar, Joanne; Rolandelli, Rolando H; Németh, Zoltán H

    2014-04-01

    Patients with equestrian injuries were identified in the trauma registry from 2004 to 2007. We a priori divided patients into three groups: 0 to 18 years, 19 to 49 years, and 50 years old or older. There were 284 patients identified with equestrian-related trauma. Injury Severity Score for the three major age categories 0 to 18 years, 19 to 49 years, and 50 years or older, were 3.47, 5.09, and 6.27, respectively. The most common body region injured among all patients was the head (26.1%). The most common injuries by age group were: 0 to 18 years, upper extremity fractures; 19 to 49 year olds, concussions; and 50 years or older, rib fractures. Significant differences were observed among the three age groups in terms of percent of patients with rib fractures: percent of patients with rib fractures was 2, 8, and 22 per cent in age groups 0 to 18, 19 to 49, and 50 years or older, respectively. We found different patterns of injuries associated with equestrian accidents by age. Head injuries were commonly seen among participants in equestrian activities and helmet use should be promoted to minimize the severity of closed head injuries. Injury patterns also seem to vary among the various age groups that ride horses. This information could be used to better target injury prevention efforts among these patients. PMID:24887673

  12. Robust algorithm for estimation of time-varying transfer functions.

    PubMed

    Zou, Rui; Chon, Ki H

    2004-02-01

    We introduce a new method to estimate reliable time-varying (TV) transfer functions (TFs) and TV impulse response functions. The method is based on TV autoregressive moving average models in which the TV parameters are accurately obtained using the optimal parameter search method which we have previously developed. The new method is more accurate than the recursive least-squares (RLS), and remains robust even in the case of significant noise contamination. Furthermore, the new method is able to track dynamics that change abruptly, which is certainly a deficiency of the RLS. Application of the new method to renal blood pressure and flow revealed that hypertensive rats undergo more complex and TV autoregulation in maintaining stable blood flow than do normotensive rats. This observation has not been previously revealed using time-invariant TF analyses. The newly developed approach may promote the broader use of TV system identification in studies of physiological systems and makes linear and nonlinear TV modeling possible in certain cases previously thought intractable. PMID:14765694

  13. Observational constraints on holographic dark energy with varying gravitational constant

    SciTech Connect

    Lu, Jianbo; Xu, Lixin; Saridakis, Emmanuel N.; Setare, M.R. E-mail: msaridak@phys.uoa.gr E-mail: lxxu@dlut.edu.cn

    2010-03-01

    We use observational data from Type Ia Supernovae (SN), Baryon Acoustic Oscillations (BAO), Cosmic Microwave Background (CMB) and observational Hubble data (OHD), and the Markov Chain Monte Carlo (MCMC) method, to constrain the cosmological scenario of holographic dark energy with varying gravitational constant. We consider both flat and non-flat background geometry, and we present the corresponding constraints and contour-plots of the model parameters. We conclude that the scenario is compatible with observations. In 1σ we find Ω{sub Λ0} = 0.72{sup +0.03}{sub −0.03}, Ω{sub k0} = −0.0013{sup +0.0130}{sub −0.0040}, c = 0.80{sup +0.19}{sub −0.14} and Δ{sub G}≡G'/G = −0.0025{sup +0.0080}{sub −0.0050}, while for the present value of the dark energy equation-of-state parameter we obtain w{sub 0} = −1.04{sup +0.15}{sub −0.20}.

  14. External Field QED on Cauchy Surfaces for Varying Electromagnetic Fields

    NASA Astrophysics Data System (ADS)

    Deckert, D.-A.; Merkl, F.

    2016-08-01

    The Shale-Stinespring Theorem (J Math Mech 14:315-322, 1965) together with Ruijsenaar's criterion (J Math Phys 18(4):720-737, 1977) provide a necessary and sufficient condition for the implementability of the evolution of external field quantum electrodynamics between constant-time hyperplanes on standard Fock space. The assertion states that an implementation is possible if and only if the spatial components of the external electromagnetic four-vector potential {A_μ} are zero. We generalize this result to smooth, space-like Cauchy surfaces and, for general {A_μ}, show how the second-quantized Dirac evolution can always be implemented as a map between varying Fock spaces. Furthermore, we give equivalence classes of polarizations, including an explicit representative, that give rise to those admissible Fock spaces. We prove that the polarization classes only depend on the tangential components of {A_μ} w.r.t. the particular Cauchy surface, and show that they behave naturally under Lorentz and gauge transformations.

  15. Inactivation of GDP-fucose transporter gene (Slc35c1) in CHO cells by ZFNs, TALENs and CRISPR-Cas9 for production of fucose-free antibodies.

    PubMed

    Chan, Kah Fai; Shahreel, Wahyu; Wan, Corrine; Teo, Gavin; Hayati, Noor; Tay, Shi Jie; Tong, Wen Han; Yang, Yuansheng; Rudd, Pauline M; Zhang, Peiqing; Song, Zhiwei

    2016-03-01

    Removal of core fucose from N-glycans attached to human IgG1 significantly enhances its affinity for the receptor FcγRIII and thereby dramatically improves its antibody-dependent cellular cytotoxicity activity. While previous works have shown that inactivation of fucosyltransferase 8 results in mutants capable of producing fucose-free antibodies, we report here the use of genome editing techniques, namely ZFNs, TALENs and the CRISPR-Cas9, to inactivate the GDP-fucose transporter (SLC35C1) in Chinese hamster ovary (CHO) cells. A FACS approach coupled with a fucose-specific lectin was developed to rapidly isolate SLC35C1-deficient cells. Mass spectrometry analysis showed that both EPO-Fc produced in mutants arising from CHO-K1 and anti-Her2 antibody produced in mutants arising from a pre-existing antibody-producing CHO-HER line lacked core fucose. Lack of functional SLC35C1 in these cells does not affect cell growth or antibody productivity. Our data demonstrate that inactivating Slc35c1 gene represents an alternative approach to generate CHO cells for production of fucose-free antibodies. PMID:26471004

  16. Radon diffusion coefficients in soils of varying moisture content

    NASA Astrophysics Data System (ADS)

    Papachristodoulou, C.; Ioannides, K.; Pavlides, S.

    2009-04-01

    Radon is a naturally occurring radioactive gas that is generated in the Earth's crust and is free to migrate through soil and be released to the atmosphere. Due to its unique properties, soil gas radon has been established as a powerful tracer used for a variety of purposes, such as exploring uranium ores, locating geothermal resources and hydrocarbon deposits, mapping geological faults, predicting seismic activity or volcanic eruptions and testing atmospheric transport models. Much attention has also been given to the radiological health hazard posed by increased radon concentrations in the living and working environment. In order to exploit radon profiles for geophysical purposes and also to predict its entry indoors, it is necessary to study its transport through soils. Among other factors, the importance of soil moisture in such studies has been largely highlighted and it is widely accepted that any measurement of radon transport parameters should be accompanied by a measurement of the soil moisture content. In principle, validation of transport models in the field is encountered by a large number of uncontrollable and varying parameters; laboratory methods are therefore preferred, allowing for experiments to be conducted under well-specified and uniform conditions. In this work, a laboratory technique has been applied for studying the effect of soil moisture content on radon diffusion. A vertical diffusion chamber was employed, in which radon was produced from a 226Ra source, was allowed to diffuse through a soil column and was finally monitored using a silicon surface barrier detector. By solving the steady-state radon diffusion equation, diffusion coefficients (D) were determined for soil samples of varying moisture content (m), from null (m=0) to saturation (m=1). For dry soil, a D value of 4.1×10-7 m2s-1 was determined, which increased moderately by a factor of ~3 for soil with low moisture content, i.e. up to m ~0.2. At higher water fractions, a decrease

  17. Development of the Spittlebug Mahanarva fimbriolata under Varying Photophase Conditions

    PubMed Central

    Simões, Amanda Daniela; Lima, Eraldo Rodrigues; Auad, Alexander Machado; Resende, Tiago Teixeira; Leite, Melissa Vieira

    2013-01-01

    The effects of varying photophase conditions on biological parameters of Mahanarva fimbriolata (Stal) (Hemiptera: Cercopidae), nymphs and adults were evaluated. Eggs of a late developmental stage were placed near sugarcane roots (cultivar RB739735) maintained in a greenhouse (21 ± 7° C, 90 ± 10% RH). Nymphs and adults were exposed to the following photophase conditions: a) 13:11 L:D as nymphs and adults, b) 13:11 as nymphs and 12:12 as adults, c) 12:12 as nymphs and adults, and d) 12:12 as nymphs and 13:11 as adults. Exposure of nymphs to 13 hr of light significantly reduced the duration of the nymphal stage and the number of nymphs that matured to adults. The duration of the nymphal stage was longer in individuals developing into females than in those developing into males. There was an increase in the longevity of adults kept at 13 hr of light since the nymphal stage. The average longevity of adult males and females was approximately the same. The sex ratio was similar under all photophase conditions. The life cycle of insects kept at 12 and 13 hr of light during nymphal and adult stages respectively was extended. The total life cycle was significantly longer in M. fimbriolata females than males. The different photophase conditions did not affect the reproductive potential of M. fimbriolata. Females produced more diapausing than non-diapausing eggs, except when under 13- and 12-hr light conditions. There was no significant difference in the number of diapausing and non-diapausing eggs produced by females under the other photophase conditions. PMID:24735047

  18. Development of the spittlebug Mahanarva fimbriolata under varying photophase conditions.

    PubMed

    Simões, Amanda Daniela; Lima, Eraldo Rodrigues; Auad, Alexander Machado; Resende, Tiago Teixeira; Leite, Melissa Vieira

    2013-01-01

    The effects of varying photophase conditions on biological parameters of Mahanarva fimbriolata (Stal) (Hemiptera: Cercopidae), nymphs and adults were evaluated. Eggs of a late developmental stage were placed near sugarcane roots (cultivar RB739735) maintained in a greenhouse (21 ± 7 °C, 90 ± 10% RH). Nymphs and adults were exposed to the following photophase conditions: (a) 13:11 L:D as nymphs and adults, (b) 13:11 as nymphs and 12:12 as adults, (c) 12:12 as nymphs and adults, and d) 12:12 as nymphs and 13:11 as adults. Exposure of nymphs to 13 hr of light significantly reduced the duration of the nymphal stage and the number of nymphs that matured to adults. The duration of the nymphal stage was longer in individuals developing into females than in those developing into males. There was an increase in the longevity of adults kept at 13 hr of light since the nymphal stage. The average longevity of adult males and females was approximately the same. The sex ratio was similar under all photophase conditions. The life cycle of insects kept at 12 and 13 hr of light during nymphal and adult stages respectively was extended. The total life cycle was significantly longer in M. fimbriolata females than males. The different photophase conditions did not affect the reproductive potential of M. fimbriolata. Females produced more diapausing than non-diapausing eggs, except when under 13- and 12-hr light conditions. There was no significant difference in the number of diapausing and non-diapausing eggs produced by females under the other photophase conditions. PMID:24735047

  19. TDR Using Autocorrelation and Varying-Duration Pulses

    NASA Technical Reports Server (NTRS)

    Lucena, Angel; Mullinex, Pam; Huang, PoTien; Santiago, Josephine; Mata, Carlos; Zavala, Carlos; Lane, John

    2008-01-01

    In an alternative to a prior technique of time-domain-reflectometry (TDR) in which very short excitation pulses are used, the pulses have very short rise and fall times and the pulse duration is varied continuously between a minimum and a maximum value. In both the present and prior techniques, the basic idea is to (1) measure the times between the generation of excitation pulses and the reception of reflections of the pulses as indications of the locations of one or more defects along a cable and (2) measure the amplitudes of the reflections as indication of the magnitudes of the defects. In general, an excitation pulse has a duration T. Each leading and trailing edge of an excitation pulse generates a reflection from a defect, so that a unique pair of reflections is associated with each defect. In the present alternative technique, the processing of the measured reflection signal includes computation of the autocorrelation function R(tau) identical with fx(t)x(t-tau)dt where t is time, x(t) is the measured reflection signal at time t, and taus is the correlation interval. The integration is performed over a measurement time interval short enough to enable identification and location of a defect within the corresponding spatial interval along the cable. Typically, where there is a defect, R(tau) exhibits a negative peak having maximum magnitude for tau in the vicinity of T. This peak can be used as a means of identifying a leading-edge/trailing-edge reflection pair. For a given spatial interval, measurements are made and R(tau) computed, as described above, for pulse durations T ranging from the minimum to the maximum value. The advantage of doing this is that the effective signal-to-noise ratio may be significantly increased over that attainable by use of a fixed pulse duration T.

  20. Extremely varied phenotypes in granular corneal dystrophy type 2 heterozygotes

    PubMed Central

    Han, Kyung Eun; Choi, Seung-il; Chung, Woo Suk; Jung, Se Hwan; Katsanis, Nicholas; Kim, Tae-im

    2012-01-01

    Purpose To investigate the phenotypic variability of patients bearing the heterozygous R124H mutation in the TGFBI (transforming growth factor-beta-induced) gene that causes granular corneal dystrophy type 2 (GCD2). Methods We describe the phenotypic range of GCD2 heterozygotes for the common R124H mutation in TGFBI; seven with an extremely mild phenotype and six with an extremely severe phenotype. Detailed slit-lamp photographs of these patients were generated. All patients had no history of ocular surgery and were diagnosed as being heterozygous for GCD2 by DNA analysis from peripheral blood. Expression levels of transforming growth factor-beta-induced protein (TGFBIp) were compared among cultured corneal fibroblasts from ten normal donors. Results We report profound differences in the severity of the phenotype across our case series. Two patients with a mild phenotype were diagnosed as unaffected at presentation; however follow-up examinations revealed granular deposits. Importantly, we also observed familial clustering of phenotypic variance; five patients from two families with a mild phenotype showed a similarly mild phenotype within family members. Similarly, six patients from two families with severe phenotypes showed corneal deposits with similar patterns and severity within each distinct family, but distinct patterns between families. TGFBIp expressions from different donor derived cultured corneal fibroblasts were different between one another. Conclusions GCD2 heterozygotes have extremely varied phenotypes between individual patients. However phenotypes were broadly consistent within families, suggesting that the observed variable expressivity might be regulated by other genetic factors that could influence the abundance of TGFBIp or the function of the pathway. From a clinical perspective, our data also highlighted that genetic analysis and meticulous slit-lamp examination in both eyes at multiple time intervals is necessary. PMID:22815629

  1. Escalation Patterns of Varying Periods of Heroin Access

    PubMed Central

    Vendruscolo, Leandro F.; Schlosburg, Joel E.; Misra, Kaushik K.; Chen, Scott A.; Greenwell, Thomas N.; Koob, George F.

    2011-01-01

    The prevalence of opioid abuse and dependence has been on the rise in just the past few years. Animal studies indicate that extended access to heroin produces escalation of intake over time, whereas stable intake is observed under limited-access conditions. Escalation of drug intake has been suggested to model the transition from controlled drug use to compulsive drug seeking and taking. Here, we directly compared the pattern of heroin intake in animals with varying periods of heroin access. Food intake was also monitored over the course of escalation. Rats were allowed to lever press on a fixed-ratio 1 schedule of reinforcement to receive intravenous infusions of heroin for 1, 6, 12, or 23 h per day for 14 sessions. The results showed that heroin intake in the 12 and 23 h groups markedly increased over time, whereas heroin intake in the 1 h group was stable. The 6 h group showed a significant but modest escalation of intake. Total heroin intake was similar in the 12 and 23 h groups, but the rate of heroin self-administration was two-fold higher in the 12 h group compared with the 23 h group. Food intake decreased over sessions only in the 12 h group. The 12 and 23 h groups showed marked physical signs of naloxone-precipitated withdrawal. These findings suggest that 12 h heroin access per day may be the optimal access time for producing escalation of heroin intake. The advantages of this model and the potential relevance for studying drug addiction are discussed. PMID:21406200

  2. Vehicle Walks on Varied Terrain, Can Assist Handicapped Persons

    NASA Technical Reports Server (NTRS)

    1964-01-01

    The problem: Designing a vehicle capable of traversing varied terrain at moderate speeds (up to 4 miles per hour). Development of such a vehicle was originally undertaken to meet NASA requirements for a remotely controlled instrument carrier to be used for unmanned exploration of lunar and planetary surfaces. The solution: A battery-powered motorized vehicle with three pairs of legs that are connected to push rods and a series of linkages. How it's done: Locomotion of the basic vehicle is accomplished by three pairs of legs, one pair in the front and two pairs in the rear. Each leg consists of an upper horizontal portion, a middle vertical portion, and a foot. Two cams connected to the drive mechanism (a small motor, gearbox, and push rods) control the motion of the legs. The two outer rear legs move in unison with the right front leg, and the two inner rear legs move in unison with the left front leg. Each set of three legs is lifted to clear or rest on any expected obstacle on the terrain to be traversed by the vehicle and advanced a fixed distance for the succeeding step. A system of spring-loaded vertical-motion linkages permits obstacles (within design limitations) to be traversed with a minimum disturbance of the vehicle's axes. The linkages are arranged to permit the legs to be folded when the vehicle is stored. Steering is accomplished by a small motor, which swings the front pair of legs to the desired angle. The rear legs are connected by a differential linkage to compensate for the required variation in step length or speed between the right and left pairs of rear legs when turns are made.

  3. Strong coupling problem with time-varying sound speed

    NASA Astrophysics Data System (ADS)

    Joyce, Austin; Khoury, Justin

    2011-10-01

    For a single scalar field with unit sound speed minimally coupled to Einstein gravity, there are exactly three distinct cosmological solutions which produce a scale invariant spectrum of curvature perturbations in a dynamical attractor background, assuming vacuum initial conditions: slow-roll inflation; a slowly contracting adiabatic ekpyrotic phase, described by a rapidly-varying equation of state; and an adiabatic ekpyrotic phase on a slowly expanding background. Of these three, only inflation remains weakly coupled over a wide range of modes, while the other scenarios can produce at most 12 e-folds of scale invariant and Gaussian modes. In this paper, we investigate how allowing the speed of sound of fluctuations to evolve in time affects this classification. While in the presence of a variable sound speed there are many more scenarios which are scale invariant at the level of the two-point function, they generically suffer from strong coupling problems similar to those in the canonical case. There is, however, an exceptional case with superluminal sound speed, which suppresses non-Gaussianities and somewhat alleviates strong coupling issues. We focus on a particular realization of this limit and show these scenarios are constrained and only able to produce at most 28 e-folds of scale invariant and Gaussian perturbations. A similar bound should hold more generally—the condition results from the combined requirements of matching the observed amplitude of curvature perturbations, demanding that the Hubble parameter remain sub-Planckian and keeping non-Gaussianities under control. We therefore conclude that inflation remains the unique cosmological scenario, assuming a single degree of freedom on an attractor background, capable of producing arbitrarily many scale invariant modes while remaining weakly coupled. Alternative mechanisms must inevitably be unstable or rely on multiple degrees of freedom.

  4. Reconciling sensory cues and varied consequences of avian repellents.

    PubMed

    Werner, Scott J; Provenza, Frederick D

    2011-02-01

    We learned previously that red-winged blackbirds (Agelaius phoeniceus) use affective processes to shift flavor preference, and cognitive associations (colors) to avoid food, subsequent to avoidance conditioning. We conducted three experiments with captive red-winged blackbirds to reconcile varied consequences of treated food with conditioned sensory cues. In Experiment 1, we compared food avoidance conditioned with lithium chloride (LiCl) or naloxone hydrochloride (NHCl) to evaluate cue-consequence specificity. All blackbirds conditioned with LiCl (gastrointestinal toxin) avoided the color (red) and flavor (NaCl) of food experienced during conditioning; birds conditioned with NHCl (opioid antagonist) avoided only the color (not the flavor) of food subsequent to conditioning. In Experiment 2, we conditioned experimentally naïve blackbirds using free choice of colored (red) and flavored (NaCl) food paired with an anthraquinone- (postingestive, cathartic purgative), methiocarb- (postingestive, cholinesterase inhibitor), or methyl anthranilate-based repellent (preingestive, trigeminal irritant). Birds conditioned with the postingestive repellents avoided the color and flavor of foods experienced during conditioning; methyl anthranilate conditioned only color (not flavor) avoidance. In Experiment 3, we used a third group of blackbirds to evaluate effects of novel comparison cues (blue, citric acid) subsequent to conditioning with red and NaCl paired with anthraquinone or methiocarb. Birds conditioned with the postingestive repellents did not avoid conditioned color or flavor cues when novel comparison cues were presented during the test. Thus, blackbirds cognitively associate pre- and postingestive consequences with visual cues, and reliably integrate visual and gustatory experience with postingestive consequences to procure nutrients and avoid toxins. PMID:20971129

  5. The Effects of Varying Cosmological Parameters on Halo Substructure

    NASA Astrophysics Data System (ADS)

    Dooley, Gregory A.; Griffen, Brendan F.; Zukin, Phillip; Ji, Alexander P.; Vogelsberger, Mark; Hernquist, Lars E.; Frebel, Anna

    2014-05-01

    We investigate how different cosmological parameters, such as those delivered by the WMAP and Planck missions, affect the nature and evolution of the dark matter halo substructure. We use a series of flat Λ cold dark matter cosmological N-body simulations of structure formation, each with a different power spectrum but with the same initial white noise field. Our fiducial simulation is based on parameters from the WMAP seventh year cosmology. We then systematically vary the spectral index, ns ; matter density, Ω M ; and normalization of the power spectrum, σ8, for seven unique simulations. Across these, we study variations in the subhalo mass function, mass fraction, maximum circular velocity function, spatial distribution, concentration, formation times, accretion times, and peak mass. We eliminate dependence of subhalo properties on host halo mass and average the values over many hosts to reduce variance. While the "same" subhalos from identical initial overdensity peaks in higher σ8, ns , and Ω m simulations accrete earlier and end up less massive and closer to the halo center at z = 0, the process of continuous subhalo accretion and destruction leads to a steady state distribution of these properties across all subhalos in a given host. This steady state mechanism eliminates cosmological dependence on all of the properties listed above except for subhalo concentration and V max, which remain greater for higher σ8, ns , and Ω m simulations, and subhalo formation time, which remains earlier. We also find that the numerical technique for computing the scale radius and the halo finder that were used can significantly affect the concentration-mass relationship as computed for a simulation.

  6. The effects of varying cosmological parameters on halo substructure

    SciTech Connect

    Dooley, Gregory A.; Griffen, Brendan F.; Ji, Alexander P.; Vogelsberger, Mark; Frebel, Anna; Zukin, Phillip; Hernquist, Lars E.

    2014-05-01

    We investigate how different cosmological parameters, such as those delivered by the WMAP and Planck missions, affect the nature and evolution of the dark matter halo substructure. We use a series of flat Λ cold dark matter cosmological N-body simulations of structure formation, each with a different power spectrum but with the same initial white noise field. Our fiducial simulation is based on parameters from the WMAP seventh year cosmology. We then systematically vary the spectral index, n{sub s} ; matter density, Ω {sub M}; and normalization of the power spectrum, σ{sub 8}, for seven unique simulations. Across these, we study variations in the subhalo mass function, mass fraction, maximum circular velocity function, spatial distribution, concentration, formation times, accretion times, and peak mass. We eliminate dependence of subhalo properties on host halo mass and average the values over many hosts to reduce variance. While the 'same' subhalos from identical initial overdensity peaks in higher σ{sub 8}, n{sub s} , and Ω {sub m} simulations accrete earlier and end up less massive and closer to the halo center at z = 0, the process of continuous subhalo accretion and destruction leads to a steady state distribution of these properties across all subhalos in a given host. This steady state mechanism eliminates cosmological dependence on all of the properties listed above except for subhalo concentration and V {sub max}, which remain greater for higher σ{sub 8}, n{sub s} , and Ω {sub m} simulations, and subhalo formation time, which remains earlier. We also find that the numerical technique for computing the scale radius and the halo finder that were used can significantly affect the concentration-mass relationship as computed for a simulation.

  7. Bacterial Communities Vary between Sinuses in Chronic Rhinosinusitis Patients

    PubMed Central

    Joss, Tom V.; Burke, Catherine M.; Hudson, Bernard J.; Darling, Aaron E.; Forer, Martin; Alber, Dagmar G.; Charles, Ian G.; Stow, Nicholas W.

    2016-01-01

    Chronic rhinosinusitis (CRS) is a common and potentially debilitating disease characterized by inflammation of the sinus mucosa for longer than 12 weeks. Bacterial colonization of the sinuses and its role in the pathogenesis of this disease is an ongoing area of research. Recent advances in culture-independent molecular techniques for bacterial identification have the potential to provide a more accurate and complete assessment of the sinus microbiome, however there is little concordance in results between studies, possibly due to differences in the sampling location and techniques. This study aimed to determine whether the microbial communities from one sinus could be considered representative of all sinuses, and examine differences between two commonly used methods for sample collection, swabs, and tissue biopsies. High-throughput DNA sequencing of the bacterial 16S rRNA gene was applied to both swab and tissue samples from multiple sinuses of 19 patients undergoing surgery for treatment of CRS. Results from swabs and tissue biopsies showed a high degree of similarity, indicating that swabbing is sufficient to recover the microbial community from the sinuses. Microbial communities from different sinuses within individual patients differed to varying degrees, demonstrating that it is possible for distinct microbiomes to exist simultaneously in different sinuses of the same patient. The sequencing results correlated well with culture-based pathogen identification conducted in parallel, although the culturing missed many species detected by sequencing. This finding has implications for future research into the sinus microbiome, which should take this heterogeneity into account by sampling patients from more than one sinus. PMID:26834708

  8. Song Trait Similarity in Great Tits Varies with Social Structure

    PubMed Central

    Snijders, Lysanne; van der Eijk, Jerine; van Rooij, Erica P.; de Goede, Piet; van Oers, Kees; Naguib, Marc

    2015-01-01

    For many animals, long-range signalling is essential to maintain contact with conspecifics. In territorial species, individuals often have to balance signalling towards unfamiliar potential competitors (to solely broadcast territory ownership) with signalling towards familiar immediate neighbours (to also maintain so-called “dear enemy” relations). Hence, to understand how signals evolve due to these multilevel relationships, it is important to understand how general signal traits vary in relation to the overall social environment. For many territorial songbirds dawn is a key signalling period, with several neighbouring individuals singing simultaneously without immediate conflict. In this study we tested whether sharing a territory boundary, rather than spatial proximity, is related to similarity in dawn song traits between territorial great tits (Parus major) in a wild personality-typed population. We collected a large dataset of automatized dawn song recordings from 72 unique male great tits, during the fertile period of their mate, and compared specific song traits between neighbours and non-neighbours. We show here that both song rate and start time of dawn song were repeatable song traits. Moreover, neighbours were significantly more dissimilar in song rate compared to non-neighbours, while there was no effect of proximity on song rate similarity. Additionally, similarity in start time of dawn song was unrelated to sharing a territory boundary, but birds were significantly more similar in start time of dawn song when they were breeding in close proximity of each other. We suggest that the dissimilarity in dawn song rate between neighbours is either the result of neighbouring great tits actively avoiding similar song rates to possibly prevent interference, or a passive consequence of territory settlement preferences relative to the types of neighbours. Neighbourhood structuring is therefore likely to be a relevant selection pressure shaping variation in

  9. Latitudinal gradients in ecosystem engineering by oysters vary across habitats.

    PubMed

    McAfee, Dominic; Cole, Victoria J; Bishop, Melanie J

    2016-04-01

    Ecological theory predicts that positive interactions among organisms will increase across gradients of increasing abiotic stress or consumer pressure. This theory has been supported by empirical studies examining the magnitude of ecosystem engineering across environmental gradients and between habitat settings at local scale. Predictions that habitat setting, by modifying both biotic and abiotic factors, will determine large-scale gradients in ecosystem engineering have not been tested, however. A combination of manipulative experiments and field surveys assessed whether along the east Australian coastline: (1) facilitation of invertebrates by the oyster Saccostrea glomerata increased across a latitudinal gradient in temperature; and (2) the magnitude of this effect varied between intertidal rocky shores and mangrove forests. It was expected that on rocky shores, where oysters are the primary ecosystem engineer, they would play a greater role in ameliorating latitudinal gradients in temperature than in mangroves, where they are a secondary ecosystem engineer living under the mangrove canopy. On rocky shores, the enhancement of invertebrate abundance in oysters as compared to bare microhabitat decreased with latitude, as the maximum temperatures experienced by intertidal organisms diminished. By contrast, in mangrove forests, where the mangrove canopy resulted in maximum temperatures that were cooler and of greater humidity than on rocky shores, we found no evidence of latitudinal gradients of oyster effects on invertebrate abundance. Contrary to predictions, the magnitude by which oysters enhanced biodiversity was in many instances similar between mangroves and rocky shores. Whether habitat-context modifies patterns of spatial variation in the effects of ecosystem engineers on community structure will depend, in part, on the extent to which the environmental amelioration provided by an ecosystem engineer replicates that of other co-occurring ecosystem engineers

  10. Development of a Linear Stirling Model with Varying Heat Inputs

    NASA Technical Reports Server (NTRS)

    Regan, Timothy F.; Lewandowski, Edward J.

    2007-01-01

    The linear model of the Stirling system developed by NASA Glenn Research Center (GRC) has been extended to include a user-specified heat input. Previously developed linear models were limited to the Stirling convertor and electrical load. They represented the thermodynamic cycle with pressure factors that remained constant. The numerical values of the pressure factors were generated by linearizing GRC s non-linear System Dynamic Model (SDM) of the convertor at a chosen operating point. The pressure factors were fixed for that operating point, thus, the model lost accuracy if a transition to a different operating point were simulated. Although the previous linear model was used in developing controllers that manipulated current, voltage, and piston position, it could not be used in the development of control algorithms that regulated hot-end temperature. This basic model was extended to include the thermal dynamics associated with a hot-end temperature that varies over time in response to external changes as well as to changes in the Stirling cycle. The linear model described herein includes not only dynamics of the piston, displacer, gas, and electrical circuit, but also the transient effects of the heater head thermal inertia. The linear version algebraically couples two separate linear dynamic models, one model of the Stirling convertor and one model of the thermal system, through the pressure factors. The thermal system model includes heat flow of heat transfer fluid, insulation loss, and temperature drops from the heat source to the Stirling convertor expansion space. The linear model was compared to a nonlinear model, and performance was very similar. The resulting linear model can be implemented in a variety of computing environments, and is suitable for analysis with classical and state space controls analysis techniques.

  11. The Activity of Antimicrobial Surfaces Varies by Testing Protocol Utilized

    PubMed Central

    Campos, Matias D.; Zucchi, Paola C.; Phung, Ann; Leonard, Steven N.; Hirsch, Elizabeth B.

    2016-01-01

    Background Contaminated hospital surfaces are an important source of nosocomial infections. A major obstacle in marketing antimicrobial surfaces is a lack of efficacy data based on standardized testing protocols. Aim We compared the efficacy of multiple testing protocols against several “antimicrobial” film surfaces. Methods Four clinical isolates were used: one Escherichia coli, one Klebsiella pneumoniae, and two Staphylococcus aureus strains. Two industry methods (modified ISO 22196 and ASTM E2149), a “dried droplet”, and a “transfer” method were tested against two commercially available antimicrobial films, one film in development, an untreated control, and a positive (silver) control film. At 2 (only ISO) and 24 hours following inoculation, bacteria were collected from film surfaces and enumerated. Results Compared to untreated films in all protocols, there were no significant differences in recovery on either commercial brand at 2 or 24 hours after inoculation. The silver surface demonstrated significant microbicidal activity (mean loss 4.9 Log10 CFU/ml) in all methods and time points with the exception of 2 hours in the ISO protocol and the transfer method. Using our novel droplet method, no differences between placebo and active surfaces were detected. The surface in development demonstrated variable activity depending on method, organism, and time point. The ISO demonstrated minimal activity at 2 hours but significant activity at 24 hours (mean 4.5 Log10 CFU/ml difference versus placebo). The ASTEM protocol exhibited significant differences in recovery of staphylococci (mean 5 Log10 CFU/ml) but not Gram-negative isolates (10 fold decrease). Minimal activity was observed with this film in the transfer method. Conclusions Varying results between protocols suggested that efficacy of antimicrobial surfaces cannot be easily and reproducibly compared. Clinical use should be considered and further development of representative methods is needed. PMID

  12. The Influence of Amazonian Deforestation under Varied Rainfall Regimes

    NASA Astrophysics Data System (ADS)

    Bagley, J. E.; Desai, A. R.; Harding, K. J.; Snyder, P. K.; Foley, J. A.

    2011-12-01

    In the past six years the Amazon basin has experienced two "once in a century" level droughts. The impacts of the 2005 and 2010 droughts ranged from large increases in fire frequency to a reversal of the Amazon region from a net carbon sink of ~.4 Pg C year-1 in normal years to a source of 1.8 Pg C year-1 for 2010. Coupled with impacts from deforestation in the region, these droughts strongly altered the services provided by local ecosystems including the biogeophysical regulation of energy and water flow between the land and the atmosphere. We investigated how the biogeophysical impacts of land cover change (LCC) in the Amazon Basin differ under drought versus pluvial conditions, and how the differences may enhance or diminish those conditions by altering precipitation patterns and intensity. In particular, we focus on how changes in evapotranspiration due to LCC influence both surface energy balance and local/downstream precipitation differently under varying rainfall regimes. We utilized a series of twelve simulations of the Weather Research and Forecasting (WRF) mesoscale atmospheric model coupled to the Noah land surface model to model the influence of deforestation on regional precipitation. These simulations represent three drought years (including 2005 and 2010) and three pluvial years, with land cover set as both potential and actual for each year. Using the precipitation backtrajectory approach of Dirmeyer and Brubaker (2007) we identify where evapotranspired moisture from the Amazon falls as precipitation during the region's dry season. This allows us to calculate how the dual influences of deforestation and natural variability alter the location, magnitude, and recycling ratio of rainfall originating from Amazonian evapotranspiration, all of which are key metrics for both ecological services and productivity in the region.

  13. Does the availability of snack foods in supermarkets vary internationally?

    PubMed Central

    2013-01-01

    Background Cross-country differences in dietary behaviours and obesity rates have been previously reported. Consumption of energy-dense snack foods and soft drinks are implicated as contributing to weight gain, however little is known about how the availability of these items within supermarkets varies internationally. This study assessed variations in the display of snack foods and soft drinks within a sample of supermarkets across eight countries. Methods Within-store audits were used to evaluate and compare the availability of potato chips (crisps), chocolate, confectionery and soft drinks. Displays measured included shelf length and the proportion of checkouts and end-of-aisle displays containing these products. Audits were conducted in a convenience sample of 170 supermarkets across eight developed nations (Australia, Canada, Denmark, Netherlands, New Zealand, Sweden, United Kingdom (UK), and United States of America (US)). Results The mean total aisle length of snack foods (adjusted for store size) was greatest in supermarkets from the UK (56.4 m) and lowest in New Zealand (21.7 m). When assessed by individual item, the greatest aisle length devoted to chips, chocolate and confectionery was found in UK supermarkets while the greatest aisle length dedicated to soft drinks was in Australian supermarkets. Only stores from the Netherlands (41%) had less than 70% of checkouts featuring displays of snack foods or soft drinks. Conclusion Whilst between-country variations were observed, overall results indicate high levels of snack food and soft drinks displays within supermarkets across the eight countries. Exposure to snack foods is largely unavoidable within supermarkets, increasing the likelihood of purchases and particularly those made impulsively. PMID:23672409

  14. Attributing varying ENSO amplitudes in climate model ensembles

    NASA Astrophysics Data System (ADS)

    Watanabe, M.; Kug, J.-S.; Jin, F.-F.; Collins, M.; Ohba, M.; Wittenberg, A.

    2012-04-01

    Realistic simulation of the El Niño-Southern Oscillation (ENSO) phenomenon, which has a great impact on the global weather and climate, is of primary importance in the coupled atmosphere-ocean modeling. Nevertheless, the ENSO amplitude is known to vary considerably in a multi-model ensemble (MME) archived in the coupled model inter-comparison project phase 3 (CMIP3). Given a large uncertainty in the atmospheric processes having a substantial influence to the models' ENSO intensity, we constructed physics parameter ensembles (PPEs) based on four climate models (two of them are included in the CMIP5 archive) in which parameters in the atmospheric parameterization schemes have been perturbed. Analysis to the 33-member PPEs reveals a positive relationship between the ENSO amplitude and the mean precipitation over the eastern equatorial Pacific in each model. This relationship is explained by the mean state difference controling the ENSO activity but not by the ENSO rectification of the mean state. The wetter mean state in the eastern equatorial Pacific favors an eastward shift in the equatorial zonal wind stress response to El Niño/La Niña, which acts to increase the ENSO amplitude due to enhanced coupled instability. Such a relationship, however, cannot be seen in both CMIP3 and CMIP5 MMEs, indicating that the above mechanism does not explain the diversity in ENSO amplitude across the models. Yet, ensemble historical runs available for some of the CMIP5 models show the positive relationship between the ENSO amplitude and the mean precipitation, providing a useful insight into the ENSO changes under the global warming in individual models.

  15. Titanium (IV) sol-gel chemistry in varied gravity environments

    NASA Astrophysics Data System (ADS)

    Hales, Matthew; Martens, Wayde; Steinberg, Theodore

    Sol-gel synthesis in reduced gravity is a relatively new topic in the literature and further inves-tigation is essential to realise its potential and application to other sol-gel systems. The sol-gel technique has been successfully applied to the synthesis of silica systems of varying porosity for many diverse applications [1-5]. It is proposed that current methods for the synthesis of silica sol-gels in reduced gravity may be applied to titanium sol-gel processing in order to enhance desirable physical and chemical characteristics of the final materials. The physical and chemical formation mechanisms for titanium alkoxide based sol-gels, to date, is not fully understood. However, various authors [6-9] have described potential methods to control the hydrolysis and condensation reactions of titanium alkoxides through the use of chemical inhibitors. A preliminary study of the reaction kinetics of titanium alkoxide sol-gel reaction in normal gravity was undertaken in order to determine reactant mixtures suitable for further testing under varied gravity conditions of limited duration. Through the use of 1H Nuclear Magnetic Resonance spectroscopy (NMR) for structural analysis of precursor materials, Ultra-Violet-Visible spectroscopy (UV-VIS) and viscosity measurements, it was demonstrated that not only could the rate of the chemical reaction could be controlled, but directed linear chain growth within the resulting gel structure was achievable through the use of increased inhibitor concentrations. Two unique test systems have been fabricated to study the effects of varied gravity (reduced, normal, high) on the formation of titanium sol-gels. Whilst the first system is to be used in conjunction with the recently commissioned drop tower facility at Queensland University of Technology in Brisbane, Australia to produce reduced gravity conditions. The second system is a centrifuge capable of providing high gravity environments of up to 70 G's for extended periods of time

  16. Elk (Cervus Canadensis) preference for feeds varying in selenium concentration.

    PubMed

    Pfister, J A; Davis, T Z; Hall, J O; Stegelmeier, B L; Panter, K E

    2015-07-01

    Selenium-accumulator plants are reputed to be unpalatable to large ungulates. Elk (Cervus canadensis) populations in southeastern Idaho overlap with populations of Se-rich plants, but there is no information on the influence of plant Se concentration on elk dietary preferences. The objective of this study was to determine, under controlled conditions, the preference of elk for feeds varying in Se concentrations. Seven yearling female elk (128 ± 5 kg) were purchased from a commercial elk farm in southeastern Idaho and adapted to low-Se alfalfa pellets. Three feeding trials using pellets with predetermined Se concentrations were conducted. Alfalfa pellets were commercially made with the addition of Symphyotrichum ascendens (western aster) so that the pellets contained 0.4, 5, 20, 50, or 100 mg/kg (DM basis) Se. In trial 1, 5 Se-containing alfalfa pellets (0.4, 5, 20, 50, and 100 mg/kg Se) were offered for 10 d; trial 2 used 4 Se-containing alfalfa pellet choices (0.4, 20, 50, and 100 mg/kg), and trial 3 used 3 pellet choices (0.4, 50, and 100 mg/kg) for 6 d. In trial 1, consumption of the control pellets by elk was greater than each of the other pellet choices (P < 0.001). Similarly, consumption of the 5-mg/kg Se pellet differed from control pellet and all other Se-containing pellets (P < 0.0001). There were no differences (P > 0.50) in consumption of the 20-, 50-, or 100-mg/kg Se pellets. In trial 2, elk consumed more (P < 0.0001) of the control pellet than the 20-, 50-, and 100-mg/kg Se pellets. Similarly, elk consumed more (P < 0.0001) of the 20-mg/kg Se pellet than the 50- and 100-mg/kg Se pellets. There were no differences (P > 0.99) in elk consumption of the 50- and 100-mg/kg Se pellets. In trial 3, elk consumption of the control and 50- and 100-mg/kg Se pellets differed (P ≤ 0.03) from one another each day except that on d 1 and 2, where elk consumption of the 50- and 100-mg/kg Se pellets did not differ (P ≥ 0.32). Elk clearly discriminated against

  17. Biodegradation of a Light NAPL under Varying Soil Environmental Conditions

    NASA Astrophysics Data System (ADS)

    Yadav, B. K.; Hassanizadeh, S. M.; Kleingeld, P. J.

    2009-12-01

    To see the impact of different soil environmental conditions on LNAPL biodegradation, a series of batch, microcosm, column and 2-D tank experiments under controlled conditions have been planned. Microcosms along with batch experiments have been designed for five different moisture contents ranging from residual to saturated, and under varying temperature condition. The batches are being used for two saturated soils containing toluene. For the unsaturated cases, fifteen microcosms are designed to mimic natural conditions more closely. The microcosms consist of a transparent outer column and an air permeable, but watertight, inner tube comprised of toluene phobic material. The space between the outer column and the inner porous tube is filled with a soil having a particular moisture content with a known amount of toluene. The inner porous tube is filled with air at atmospheric pressure, providing sufficient oxygen for the degradation of considered light NAPL. A special sampling mechanism has been fabricated to enable airtight soil sampling. Four columns have been designed for studying the impact of water table fluctuation on the LNAPL fate and transport in variably-saturated soil. Water table in two columns will be static and remaining two will be subjected to a fluctuation. Finally a 2-D tank setup, made of a steel box and a glass cover, has been refurbished for bioremediation process of LNAPL from start to finish. The main body is constructed of one piece of 1.5 mm thick stainless steel formed into a box with inner dimensions of 200cm-long x 94cm-high x 4cm-deep. The front cover is made of glass wall having 19-mm thickness. The soil is going to be packed between the two walls. The groundwater will be flowing horizontally from left to right and the water table level in the tank will be controlled by two end chambers. The chambers are separated from the soil by a fine meshed stainless steel sheet. The spatial and the temporal distributions of the LNAPL and its

  18. Does a slowly varying component of solar irradiance exist?

    NASA Astrophysics Data System (ADS)

    Foukal, P.

    2003-04-01

    Fluctuations of total irradiance, S, caused by sunspots and faculae, are too small (˜0.1%) to force current climate models. Recent reconstructions of S incorporate an additional, slowly varying component, which follows the smoothed spot or group number, or the cycle period. But evidence for this larger (0.2--0.5%) variation, originally based on photometry of sun-like stars, is weakened by recent findings that true solar analog stars are difficult to find. Also, disappearance of the chromospheric network in the early 20th century, implied by these reconstructions, is not observed in archival solar images. I will show some new evidence for an additional component, suggested by the high correlation found between global temperature and the (small-amplitude) variation of S reconstructed using recently digitized facular areas between 1915--1999.The UV irradiance variation modeled from the same data exhibits much lower correlation with global warming, so it is less likely to account for a solar activity signature in 20th century climate. This indirect evidence suggests a mechanism that might amplify the small modulation of S caused specifically by the net effect of bright faculae and dark spots. We now recognize that amplification on multi-decadal time scales could only operate in near- photospheric layers, given the enormous thermal inertia of the deeper solar atmosphere. Also, increasingly tight constraints on such a mechanism are placed by solar photometry and radiometry, by spectro-photometric monitoring of the quiet photospheric effective temperature, and by absence of detectable solar diameter variations. The shrinking set of mechanisms that might satisfy these constraints deserves closer study, and I will discuss some interesting new observational diagnostics, such as bolometric imaging of the photosphere, planned to search for such processes. But at present, little direct evidence exists for a large-amplitude, multi-decadal variation of S (or of UV flux). A

  19. Flow boiling test of GDP replacement coolants

    SciTech Connect

    Park, S.H.

    1995-08-01

    The tests were part of the CFC replacement program to identify and test alternate coolants to replace CFC-114 being used in the uranium enrichment plants at Paducah and Portsmouth. The coolants tested, C{sub 4}F{sub 10} and C{sub 4}F{sub 8}, were selected based on their compatibility with the uranium hexafluoride process gas and how well the boiling temperature and vapor pressure matched that of CFC-114. However, the heat of vaporization of both coolants is lower than that of CFC-114 requiring larger coolant mass flow than CFC-114 to remove the same amount of heat. The vapor pressure of these coolants is higher than CFC-114 within the cascade operational range, and each coolant can be used as a replacement coolant with some limitation at 3,300 hp operation. The results of the CFC-114/C{sub 4}F{sub 10} mixture tests show boiling heat transfer coefficient degraded to a minimum value with about 25% C{sub 4}F{sub 10} weight mixture in CFC-114 and the degree of degradation is about 20% from that of CFC-114 boiling heat transfer coefficient. This report consists of the final reports from Cudo Technologies, Ltd.

  20. WHEN DOES IMPROVING HEALTH RAISE GDP?

    PubMed Central

    Ashraf, Quamrul H.; Lester, Ashley; Weil, David N.

    2013-01-01

    We assess quantitatively the effect of exogenous health improvements on output per capita. Our simulation model allows for a direct effect of health on worker productivity, as well as indirect effects that run through schooling, the size and age-structure of the population, capital accumulation, and crowding of fixed natural resources. The model is parameterized using a combination of microeconomic estimates, data on demographics, disease burdens, and natural resource income in developing countries, and standard components of quantitative macroeconomic theory. We consider both changes in general health, proxied by improvements in life expectancy, and changes in the prevalence of two particular diseases: malaria and tuberculosis. We find that the effects of health improvements on income per capita are substantially lower than those that are often quoted by policy-makers, and may not emerge at all for three decades or more after the initial improvement in health. The results suggest that proponents of efforts to improve health in developing countries should rely on humanitarian rather than economic arguments. PMID:24347816

  1. Molecular cloning, sequence, and expression of a human GDP-L-fucose:. beta. -D-galactoside 2-. alpha. -L-fucosyltransferase cDNA that can form the H blood group antigen

    SciTech Connect

    Larsen, R.D.; Ernst, L.K.; Nair, R.P.; Lowe, J.B. )

    1990-09-01

    The authors have previously used a gene-transfer scheme to isolate a human genomic DNA fragment that determines expression of a GDP-L-fucose:{beta}D-galactoside 2-{alpha}-L-fucosyltransferase. Although this fragment determined expression of an {alpha}(1,2)FT whose kinetic properties mirror those of the human H blood group {alpha}(1,2)FT, their precise nature remained undefined. They describe here the molecular cloning, sequence, and expression of a human of cDNA corresponding to these human genomic sequences. When expressed in COS-1 cells, the cDNA directs expression of cell surface H structures and a cognate {alpha}(1,2)FT activity with properties analogous to the human H blood group {alpha}(1,2)FT. The cDNA sequence predicts a 365-amino acid polypeptide characteristic of a type II transmembrane glycoprotein with a domain structure analogous to that of other glycosyltransferases but without significant primary sequence similarity to these or other known proteins. To directly demonstrate that the cDNA encodes an {alpha}(1,2)FT, the COOH-terminal domain predicted to be Golgi-resident was expressed in COS-1 cells as a catalytically active, secreted, and soluble protein A fusion peptide. Southern blot analysis showed that this cDNA identified DNA sequences syntenic to the human H locus on chromosome 19. These results strongly suggest that this cloned {alpha}(1,2)FT cDNA represents the product of the human H blood group locus.

  2. VariOtator, a Software Tool for Variation Annotation with the Variation Ontology.

    PubMed

    Schaafsma, Gerard C P; Vihinen, Mauno

    2016-04-01

    The Variation Ontology (VariO) is used for describing and annotating types, effects, consequences, and mechanisms of variations. To facilitate easy and consistent annotations, the online application VariOtator was developed. For variation type annotations, VariOtator is fully automated, accepting variant descriptions in Human Genome Variation Society (HGVS) format, and generating VariO terms, either with or without full lineage, that is, all parent terms. When a coding DNA variant description with a reference sequence is provided, VariOtator checks the description first with Mutalyzer and then generates the predicted RNA and protein descriptions with their respective VariO annotations. For the other sublevels, function, structure, and property, annotations cannot be automated, and VariOtator generates annotation based on provided details. For VariO terms relating to structure and property, one can use attribute terms as modifiers and evidence code terms for annotating experimental evidence. There is an online batch version, and stand-alone batch versions to be used with a Leiden Open Variation Database (LOVD) download file. A SOAP Web service allows client programs to access VariOtator programmatically. Thus, systematic variation effect and type annotations can be efficiently generated to allow easy use and integration of variations and their consequences. PMID:26773573

  3. Identification of Time-Varying Pilot Control Behavior in Multi-Axis Control Tasks

    NASA Technical Reports Server (NTRS)

    Zaal, Peter M. T.; Sweet, Barbara T.

    2012-01-01

    Recent developments in fly-by-wire control architectures for rotorcraft have introduced new interest in the identification of time-varying pilot control behavior in multi-axis control tasks. In this paper a maximum likelihood estimation method is used to estimate the parameters of a pilot model with time-dependent sigmoid functions to characterize time-varying human control behavior. An experiment was performed by 9 general aviation pilots who had to perform a simultaneous roll and pitch control task with time-varying aircraft dynamics. In 8 different conditions, the axis containing the time-varying dynamics and the growth factor of the dynamics were varied, allowing for an analysis of the performance of the estimation method when estimating time-dependent parameter functions. In addition, a detailed analysis of pilots adaptation to the time-varying aircraft dynamics in both the roll and pitch axes could be performed. Pilot control behavior in both axes was significantly affected by the time-varying aircraft dynamics in roll and pitch, and by the growth factor. The main effect was found in the axis that contained the time-varying dynamics. However, pilot control behavior also changed over time in the axis not containing the time-varying aircraft dynamics. This indicates that some cross coupling exists in the perception and control processes between the roll and pitch axes.

  4. Study of photoemission mechanism for varied doping GaN photocathode

    NASA Astrophysics Data System (ADS)

    Qiao, Jianliang; Xu, Yuan; Niu, Jun; Gao, Youtang; Chang, Benkang

    2015-10-01

    Negative electron affinity (NEA) GaN photocathode has many virtues, such as high quantum efficiency, low dark current, concentrated electrons energy distribution and angle distribution, adjustive threshold and so on. The quantum efficiency is an important parameter for the preparation and evaluation of NEA GaN photocathode. The varied doping GaN photocathode has the directional inside electric field within the material, so the higher quantum efficiency can be obtained. The varied doping NEA GaN photocathode has better photoemission performance. According to the photoemission theory of NEA GaN photocathode, the quantum efficiency formulas for uniform doping and varied doping NEA GaN photocathodes were given. In the certain condition, the quantum efficiency formula for varied doping GaN photocathode consists with the uniform doping. The activation experiment was finished for varied doping GaN photocathode. The cleaning method and technics for varied doping GaN photocathode were given in detail. To get an atom clean surface, the heat cleaning must be done after the chemical cleaning. Using the activation and evaluation system for NEA photocathode, the varied doping GaN photocathode was activated with Cs and O, and the photocurrent curve for varied doping GaN photocathode was gotten.

  5. Release of native and amended boron from arid zone soils after varying incubation times

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In this study we evaluated the boron (B) release from soils containing elevated native B and examined the extent to which incubation time affected B release. Five soils varying in initial pH and clay content were selected for the study. The soils were spiked with five varying doses of B as H3BO3 (...

  6. Sense of Community and Interethnic Relations: Comparing Local Communities Varying in Ethnic Heterogeneity

    ERIC Educational Resources Information Center

    Castellini, Federica; Colombo, Monica; Maffeis, Daniele; Montali, Lorenzo

    2011-01-01

    This study investigates the sense of community and interethnic relations in two different metropolitan areas that vary in ethnic heterogeneity. The study was conducted in Milan, Italy using a sample of 318 participants living in different city districts that vary in ethnic heterogeneity (low vs. high). The participants completed a questionnaire…

  7. Human Newborn Color Vision: Measurement with Chromatic Stimuli Varying in Excitation Purity.

    ERIC Educational Resources Information Center

    Adams, Russell J.; Courage, Mary L.

    1998-01-01

    Habituated 180 neonates to white lights of varying luminance and tested for recovery of habituation to green, yellow, or red lights varying in excitation purity. Found that newborns discriminated chromatic stimuli from white only when excitation purity exceeded levels much higher than those for adults. Results reinforce view that neonates' vision…

  8. The Effects of Varying Pictorial Detail and Presentation Strategy on Concept Formation.

    ERIC Educational Resources Information Center

    Gorman, Don A.

    The purpose of this study is to determine the effects of varying pictorial detail and presentation strategy on learners of varying grade levels in a visually transmitted concept formation task. Specifically, line drawings containing only relevant details and halftones containing relevant and irrelevant detail were presented successively and…

  9. The Effects of Constant versus Varied Reinforcers on Preference and Resistance to Change

    ERIC Educational Resources Information Center

    Milo, Jessie-Sue; Mace, F. Charles; Nevin, John A.

    2010-01-01

    Previous research has demonstrated that factors such as reinforcer frequency, amount, and delay have similar effects on resistance to change and preference. In the present study, 4 boys with autism made choices between a constant reinforcer (one that was the same food item every trial) and a varied food reinforcer (one that varied randomly between…

  10. Fast space-varying convolution using matrix source coding with applications to camera stray light reduction.

    PubMed

    Wei, Jianing; Bouman, Charles A; Allebach, Jan P

    2014-05-01

    Many imaging applications require the implementation of space-varying convolution for accurate restoration and reconstruction of images. Here, we use the term space-varying convolution to refer to linear operators whose impulse response has slow spatial variation. In addition, these space-varying convolution operators are often dense, so direct implementation of the convolution operator is typically computationally impractical. One such example is the problem of stray light reduction in digital cameras, which requires the implementation of a dense space-varying deconvolution operator. However, other inverse problems, such as iterative tomographic reconstruction, can also depend on the implementation of dense space-varying convolution. While space-invariant convolution can be efficiently implemented with the fast Fourier transform, this approach does not work for space-varying operators. So direct convolution is often the only option for implementing space-varying convolution. In this paper, we develop a general approach to the efficient implementation of space-varying convolution, and demonstrate its use in the application of stray light reduction. Our approach, which we call matrix source coding, is based on lossy source coding of the dense space-varying convolution matrix. Importantly, by coding the transformation matrix, we not only reduce the memory required to store it; we also dramatically reduce the computation required to implement matrix-vector products. Our algorithm is able to reduce computation by approximately factoring the dense space-varying convolution operator into a product of sparse transforms. Experimental results show that our method can dramatically reduce the computation required for stray light reduction while maintaining high accuracy. PMID:24710398

  11. New method for deriving the topside ionospheric Vary-Chap scale height

    NASA Astrophysics Data System (ADS)

    Wang, Sicheng; Huang, Sixun; Fang, Hanxian

    2015-09-01

    An α-Chapman function with a continuously varying scale height H(h) can be used to describe the topside ionosphere electron density profile that seamlessly connects the ionosphere with the plasmasphere. Huang and Reinisch have derived the analytic expression of the scale height from the Vary-Chap function, which can be applied to the topside F2 region. However, the H(h) is still difficult to obtain because H(h) is a function of the unknown value H(h) at hmF2. In this paper, the maximum entropy method is introduced to solve this ill-posed problem, and the Vary-Chap scale height for each electron density profile is derived. Then the average percentage errors that defined as the differences between the measured electron density profiles and the Vary-Chap profiles obtained from the Vary-Chap scale heights are calculated with the Alouette/ISIS satellites topside sounder database. The results reveal that the average percentage errors are generally less than 5% and the Vary-Chap profiles can well represent the topside electron density profiles. What is more, the local time, seasonal, solar cycle, and latitudinal variations of the Vary-Chap scale height are preliminarily analyzed.

  12. Holographic Dark Energy in Higher Derivative Gravity with Varying Gravitational Constant

    NASA Astrophysics Data System (ADS)

    Borah, Bharat; Ansari, M.

    2013-09-01

    In this paper we investigate the holographic dark energy scenario in higher derivative gravity with a varying gravitational constant. We introduce a kind of energy density from higher derivative gravity which has role of the same as holographic dark energy. We obtain the exact differential equation , which determine the evolution of the dark energy density based on varying gravitational constant G. We also find out a cosmological application of our work by evaluating a relation for the equation of state of dark energy for low redshifts containing varying G correction.

  13. A new image encryption algorithm based on logistic chaotic map with varying parameter.

    PubMed

    Liu, Lingfeng; Miao, Suoxia

    2016-01-01

    In this paper, we proposed a new image encryption algorithm based on parameter-varied logistic chaotic map and dynamical algorithm. The parameter-varied logistic map can cure the weaknesses of logistic map and resist the phase space reconstruction attack. We use the parameter-varied logistic map to shuffle the plain image, and then use a dynamical algorithm to encrypt the image. We carry out several experiments, including Histogram analysis, information entropy analysis, sensitivity analysis, key space analysis, correlation analysis and computational complexity to evaluate its performances. The experiment results show that this algorithm is with high security and can be competitive for image encryption. PMID:27066326

  14. A statefinder luminosity distance formula in varying speed of light cosmology

    SciTech Connect

    Balcerzak, Adam; Dabrowski, Mariusz P. E-mail: mpdabfz@wmf.univ.szczecin.pl

    2014-06-01

    We derive a luminosity distance formula for the varying speed of light (VSL) theory which involves higher order characteristics of expansion such as jerk, snap and lerk which can test the impact of varying c onto the evolution of the universe. We show that the effect of varying c is possible to be isolated due to the relations connecting observational parameters already by measuring the second-order term in redshift z unless there is a redundancy between the curvature and an exotic fluid of cosmic strings scaling the same way as the curvature.

  15. Exact reconstruction analysis/synthesis filter banks with time-varying filters

    NASA Technical Reports Server (NTRS)

    Arrowood, J. L., Jr.; Smith, M. J. T.

    1993-01-01

    This paper examines some of the analysis/synthesis issues associated with FIR time-varying filter banks where the filter bank coefficients are allowed to change in response to the input signal. Several issues are identified as being important in order to realize performance gains from time-varying filter banks in image coding applications. These issues relate to the behavior of the filters as transition from one set of filter banks to another occurs. Lattice structure formulations for the time varying filter bank problem are introduced and discussed in terms of their properties and transition characteristics.

  16. JOINT STRUCTURE SELECTION AND ESTIMATION IN THE TIME-VARYING COEFFICIENT COX MODEL

    PubMed Central

    Xiao, Wei; Lu, Wenbin; Zhang, Hao Helen

    2016-01-01

    Time-varying coefficient Cox model has been widely studied and popularly used in survival data analysis due to its flexibility for modeling covariate effects. It is of great practical interest to accurately identify the structure of covariate effects in a time-varying coefficient Cox model, i.e. covariates with null effect, constant effect and truly time-varying effect, and estimate the corresponding regression coefficients. Combining the ideas of local polynomial smoothing and group nonnegative garrote, we develop a new penalization approach to achieve such goals. Our method is able to identify the underlying true model structure with probability tending to one and simultaneously estimate the time-varying coefficients consistently. The asymptotic normalities of the resulting estimators are also established. We demonstrate the performance of our method using simulations and an application to the primary biliary cirrhosis data. PMID:27540275

  17. Clinical Trial Results Vary Widely, But Always Advance Research | NIH MedlinePlus the Magazine

    MedlinePlus

    ... of this page please turn Javascript on. Feature: Clinical Trials Clinical Trial Results Vary Widely, But Always Advance Research Past ... very emotional." Should You Be Interested in a Clinical Trial People volunteer to take part in clinical trials ...

  18. A shortest path algorithm for satellite time-varying topological network

    NASA Astrophysics Data System (ADS)

    Zhang, Tao; Liu, Zhongkan; Zhuang, Jun

    2005-11-01

    Mobile satellite network is a special time-varying network. It is different from the classical fixed network and other time-dependent networks which have been studied. Therefore some classical network theories, such as the shortest path algorithm, can not be applied to it availably. However, no study about its shortest path problem has been done. In this paper, based on the proposed model of satellite time-varying topological network, the classical shortest path algorithm of fixed network, such as the Dijkstra algorithm, is proved to be restrictive when it is applied in satellite network. Here, a novel shortest path algorithm for satellite time-varying topological network is given and optimized. Correlative simulation indicates that this algorithm can be effectively applied to the satellite time-varying topological network.

  19. Synthesis procedure for linear time-varying feedback systems with large parameter ignorance

    NASA Technical Reports Server (NTRS)

    Mcdonald, T. E., Jr.

    1972-01-01

    The development of synthesis procedures for linear time-varying feedback systems is considered. It is assumed that the plant can be described by linear differential equations with time-varying coefficients; however, ignorance is associated with the plant in that only the range of the time-variations are known instead of exact functional relationships. As a result of this plant ignorance the use of time-varying compensation is ineffective so that only time-invariant compensation is employed. In addition, there is a noise source at the plant output which feeds noise through the feedback elements to the plant input. Because of this noise source the gain of the feedback elements must be as small as possible. No attempt is made to develop a stability criterion for time-varying systems in this work.

  20. Clinical Trial Results Vary Widely, But Always Advance Research | NIH MedlinePlus the Magazine

    MedlinePlus

    ... of this page please turn Javascript on. Feature: Clinical Trials Clinical Trial Results Vary Widely, But Always Advance Research ... very emotional." Should You Be Interested in a Clinical Trial People volunteer to take part in clinical ...

  1. Wave Propagation in Exponentially Varying Cross-Section Rods and Vibration Analysis

    SciTech Connect

    Nikkhah-Bahrami, Mansour; Loghmani, Masih; Pooyanfar, Mostafa

    2008-09-01

    In this paper vibration as propagating waves is used to calculate frequencies of exponentially varying cross-section rods with various boundary conditions. From wave standpoint, vibrations propagate, reflect and transmit in structures. The propagation and reflection matrices are combined to provide a concise and systematic approach to free longitudinal vibration analysis of exponentially varying cross-section rods. The results are compared with another method.

  2. Geometrical threshold zones and Gaussian modes in lasers with radially varying gain.

    PubMed

    Gatz, S; Hermann, J

    1994-11-01

    The effect of a radially varying gain in tightly focused lasers is investigated with a generalized ABCD matrix formalism in a nonparabolic approximation. It is shown that the beam sizes can differ strongly from the theoretical with a constant gain or with radially varying gain in a parabolic approximation. Geometrical threshold zones are defined and studied and, instead of the stability zones, determine the possibility of a laser action for a given cavity design. PMID:19855625

  3. Users manual for linear Time-Varying Helicopter Simulation (Program TVHIS)

    NASA Technical Reports Server (NTRS)

    Burns, M. R.

    1979-01-01

    A linear time-varying helicopter simulation program (TVHIS) is described. The program is designed as a realistic yet efficient helicopter simulation. It is based on a linear time-varying helicopter model which includes rotor, actuator, and sensor models, as well as a simulation of flight computer logic. The TVHIS can generate a mean trajectory simulation along a nominal trajectory, or propagate covariance of helicopter states, including rigid-body, turbulence, control command, controller states, and rigid-body state estimates.

  4. Two restrictions in the theories that include G( t) and c( t) varying with time

    NASA Astrophysics Data System (ADS)

    Fullana i Alfonso, Màrius Josep; Alfonso-Faus, Antonio

    2014-04-01

    Much work has been done taking into account the possibility that the gravitational constant G may vary with cosmological time t (or with the cosmological scale factor a( t)). The same may be said about the speed of light c. We present here two important remarks on these subject. These remarks include G( t) and c( t) varying with time with the restriction 8 πG/ c 4=constant.

  5. Arbitrary eigenvalue assignments for linear time-varying multivariable control systems

    NASA Technical Reports Server (NTRS)

    Nguyen, Charles C.

    1987-01-01

    The problem of eigenvalue assignments for a class of linear time-varying multivariable systems is considered. Using matrix operators and canonical transformations, it is shown that a time-varying system that is 'lexicography-fixedly controllable' can be made via state feedback to be equivalent to a time-invariant system whose eigenvalues are arbitrarily assignable. A simple algorithm for the design of the state feedback is provided.

  6. Holographic dark energy with varying gravitational constant in Hořava-Lifshitz cosmology

    SciTech Connect

    Setare, M.R.; Jamil, Mubasher E-mail: mjamil@camp.nust.edu.pk

    2010-02-01

    We investigate the holographic dark energy scenario with a varying gravitational constant in a flat background in the context of Hořava-Lifshitz gravity. We extract the exact differential equation determining the evolution of the dark energy density parameter, which includes G variation term. Also we discuss a cosmological implication of our work by evaluating the dark energy equation of state for low redshifts containing varying G corrections.

  7. Empirical mode decomposition as a time-varying multirate signal processing system

    NASA Astrophysics Data System (ADS)

    Yang, Yanli

    2016-08-01

    Empirical mode decomposition (EMD) can adaptively split composite signals into narrow subbands termed intrinsic mode functions (IMFs). Although an analytical expression of IMFs extracted by EMD from signals is introduced in Yang et al. (2013) [1], it is only used for the case of extrema spaced uniformly. In this paper, the EMD algorithm is analyzed from digital signal processing perspective for the case of extrema spaced nonuniformly. Firstly, the extrema extraction is represented by a time-varying extrema decimator. The nonuniform extrema extraction is analyzed through modeling the time-varying extrema decimation at a fixed time point as a time-invariant decimation. Secondly, by using the impulse/summation approach, spline interpolation for knots spaced nonuniformly is shown as two basic operations, time-varying interpolation and filtering by a time-varying spline filter. Thirdly, envelopes of signals are written as the output of the time-varying spline filter. An expression of envelopes of signals in both time and frequency domain is presented. The EMD algorithm is then described as a time-varying multirate signal processing system. Finally, an equation to model IMFs is derived by using a matrix formulation in time domain for the general case of extrema spaced nonuniformly.

  8. The VariLift® Interbody Fusion System: expandable, standalone interbody fusion

    PubMed Central

    Emstad, Erik; del Monaco, Diana Cardenas; Fielding, Louis C; Block, Jon E

    2015-01-01

    Intervertebral fusion cages have been in clinical use since the 1990s. Cages offer the benefits of bone graft containment, restored intervertebral and foraminal height, and a more repeatable, stable procedure compared to interbody fusion with graft material alone. Due to concerns regarding postoperative stability, loss of lordosis, and subsidence or migration of the implant, interbody cages are commonly used with supplemental fixation such as pedicle screw systems or anterior plates. While providing additional stability, supplemental fixation techniques increase operative time, exposure, cost, and morbidity. The VariLift® Interbody Fusion System (VariLift® system) has been developed as a standalone solution to provide the benefits of intervertebral fusion cages without the requirement of supplemental fixation. The VariLift® system, FDA-cleared for standalone use in both the cervical and lumbar spine, is implanted in a minimal profile and then expanded in situ to provide segmental stability, restored lordosis, and a large graft chamber. Preclinical testing and analyses have found that the VariLift® System is durable, and reduces stresses that may contribute to subsidence and migration of other standalone interbody cages. Fifteen years of clinical development with the VariLift® system have demonstrated positive clinical outcomes, continued patient maintenance of segmental stability and lordosis, and no evidence of implant migration. The purpose of this report is to describe the VariLift® system, including implant characteristics, principles of operation, indications for use, patient selection criteria, surgical technique, postoperative care, preclinical testing, and clinical experience. The VariLift® System represents an improved surgical option for a stable interbody fusion without requiring supplemental fixation. PMID:26060414

  9. Study on photoemission surface of varied doping GaN photocathode

    NASA Astrophysics Data System (ADS)

    Qiao, Jianliang; Du, Ruijuan; Ding, Huan; Gao, Youtang; Chang, Benkang

    2014-09-01

    For varied doping GaN photocathode, from bulk to surface the doping concentrations are distributed from high to low. The varied doping GaN photocathode may produce directional inside electric field within the material, so the higher quantum efficiency can be obtained. The photoemission surface of varied doping GaN photocathode is very important to the high quantum efficiency, but the forming process of the surface state after Cs activation or Cs/O activation has been not known completely. Encircling the photoemission mechanism of varied GaN photocathode, considering the experiment phenomena during the activation and the successful activation results, the varied GaN photocathode surface model [GaN(Mg):Cs]:O-Cs after activation with cesium and oxygen was given. According to GaN photocathode activation process and the change of electronic affinity, the comparatively ideal NEA property can be achieved by Cs or Cs/O activation, and higher quantum efficiency can be obtained. The results show: The effective NEA characteristic of GaN can be gotten only by Cs. [GaN(Mg):Cs] dipoles form the first dipole layer, the positive end is toward the vacuum side. In the activation processing with Cs/O, the second dipole layer is formed by O-Cs dipoles, A O-Cs dipole includes one oxygen atom and two Cs atoms, and the positive end is also toward the vacuum side thus the escape of electrons can be promoted.

  10. Opinion formation in time-varying social networks: The case of the naming game

    NASA Astrophysics Data System (ADS)

    Maity, Suman Kalyan; Manoj, T. Venkat; Mukherjee, Animesh

    2012-09-01

    We study the dynamics of the naming game as an opinion formation model on time-varying social networks. This agent-based model captures the essential features of the agreement dynamics by means of a memory-based negotiation process. Our study focuses on the impact of time-varying properties of the social network of the agents on the naming game dynamics. In particular, we perform a computational exploration of this model using simulations on top of real networks. We investigate the outcomes of the dynamics on two different types of time-varying data: (1) the networks vary on a day-to-day basis and (2) the networks vary within very short intervals of time (20 sec). In the first case, we find that networks with strong community structure hinder the system from reaching global agreement; the evolution of the naming game in these networks maintains clusters of coexisting opinions indefinitely leading to metastability. In the second case, we investigate the evolution of the naming game in perfect synchronization with the time evolution of the underlying social network shedding new light on the traditional emergent properties of the game that differ largely from what has been reported in the existing literature.

  11. Isosurface Extraction in Time-Varying Fields Using a Temporal Hierarchical Index Tree

    NASA Technical Reports Server (NTRS)

    Shen, Han-Wei; Gerald-Yamasaki, Michael (Technical Monitor)

    1998-01-01

    Many high-performance isosurface extraction algorithms have been proposed in the past several years as a result of intensive research efforts. When applying these algorithms to large-scale time-varying fields, the storage overhead incurred from storing the search index often becomes overwhelming. this paper proposes an algorithm for locating isosurface cells in time-varying fields. We devise a new data structure, called Temporal Hierarchical Index Tree, which utilizes the temporal coherence that exists in a time-varying field and adoptively coalesces the cells' extreme values over time; the resulting extreme values are then used to create the isosurface cell search index. For a typical time-varying scalar data set, not only does this temporal hierarchical index tree require much less storage space, but also the amount of I/O required to access the indices from the disk at different time steps is substantially reduced. We illustrate the utility and speed of our algorithm with data from several large-scale time-varying CID simulations. Our algorithm can achieve more than 80% of disk-space savings when compared with the existing techniques, while the isosurface extraction time is nearly optimal.

  12. Stochastic Modeling and Power Control of Time-Varying Wireless Communication Networks

    SciTech Connect

    Olama, Mohammed M; Djouadi, Seddik M; Charalambous, Prof. Charalambos

    2014-01-01

    Wireless networks are characterized by nodes mobility, which makes the propagation environment time-varying and subject to fading. As a consequence, the statistical characteristics of the received signal vary continuously, giving rise to a Doppler power spectral density (DPSD) that varies from one observation instant to the next. This paper is concerned with dynamical modeling of time-varying wireless fading channels, their estimation and parameter identification, and optimal power control from received signal measurement data. The wireless channel is characterized using a stochastic state-space form and derived by approximating the time-varying DPSD of the channel. The expected maximization and Kalman filter are employed to recursively identify and estimate the channel parameters and states, respectively, from online received signal strength measured data. Moreover, we investigate a centralized optimal power control algorithm based on predictable strategies and employing the estimated channel parameters and states. The proposed models together with the estimation and power control algorithms are tested using experimental measurement data and the results are presented.

  13. Probabilistic multi-item inventory model with varying mixture shortage cost under restrictions.

    PubMed

    Fergany, Hala A

    2016-01-01

    This paper proposed a new general probabilistic multi-item, single-source inventory model with varying mixture shortage cost under two restrictions. One of them is on the expected varying backorder cost and the other is on the expected varying lost sales cost. This model is formulated to analyze how the firm can deduce the optimal order quantity and the optimal reorder point for each item to reach the main goal of minimizing the expected total cost. The demand is a random variable and the lead time is a constant. The demand during the lead time is a random variable that follows any continuous distribution, for example; the normal distribution, the exponential distribution and the Chi square distribution. An application with real data is analyzed and the goal of minimization the expected total cost is achieved. Two special cases are deduced. PMID:27588244

  14. Adaptive dynamic surface control for MIMO nonlinear time-varying systems with prescribed tracking performance

    NASA Astrophysics Data System (ADS)

    Wang, Chenliang; Lin, Yan

    2015-04-01

    In this paper, an adaptive dynamic surface control scheme is proposed for a class of multi-input multi-output (MIMO) nonlinear time-varying systems. By fusing a bound estimation approach, a smooth function and a time-varying matrix factorisation, the obstacle caused by unknown time-varying parameters is circumvented. The proposed scheme is free of the problem of explosion of complexity and needs only one updated parameter at each design step. Moreover, all tracking errors can converge to predefined arbitrarily small residual sets with a prescribed convergence rate and maximum overshoot. Such features result in a simple adaptive controller which can be easily implemented in applications with less computational burden and satisfactory tracking performance. Simulation results are presented to illustrate the effectiveness of the proposed scheme.

  15. Robust state estimation for uncertain neural networks with time-varying delay.

    PubMed

    Huang, He; Feng, Gang; Cao, Jinde

    2008-08-01

    The robust state estimation problem for a class of uncertain neural networks with time-varying delay is studied in this paper. The parameter uncertainties are assumed to be norm bounded. Based on a new bounding technique, a sufficient condition is presented to guarantee the existence of the desired state estimator for the uncertain delayed neural networks. The criterion is dependent on the size of the time-varying delay and on the size of the time derivative of the time-varying delay. It is shown that the design of the robust state estimator for such neural networks can be achieved by solving a linear matrix inequality (LMI), which can be easily facilitated by using some standard numerical packages. Finally, two simulation examples are given to demonstrate the effectiveness of the developed approach. PMID:18701365

  16. Holographic Dark Energy Model with Time Varying G as Well as c 2 Parameter

    NASA Astrophysics Data System (ADS)

    Borah, Bharat; Ansari, M.

    2014-04-01

    In this paper, we study a holographic dark energy model with time varying gravitational constant G as well as holographic parameter c 2 in flat FRW space-time geometry. We obtain the evolution of equation of state parameter and the exact differential equation, which determine the evolution of the dark energy density based on varying G and c 2 parameter. Also, we determine the deceleration parameter to explain the expansion of the universe. Further, we study the validity of the generalized second law of thermodynamics in this scenario. Finally, we find out a cosmological implication of our work by evaluating the holographic dark energy equation of state for low red-shifts containing both varying G and c 2 parameter corrections.

  17. Do Men Vary More than Women in Personality? A Study in 51 Cultures.

    PubMed

    Borkenau, Peter; McCrae, Robert R; Terracciano, Antonio

    2013-04-01

    Do men vary more than women in personality? Evolutionary, genetic, and cultural arguments suggest that hypothesis. In this study we tested it using 12,156 college student raters from 51 cultures who described a person they knew well on the 3rd-person version of the Revised NEO Personality Inventory. In most cultures, male targets varied more than female targets, and ratings by female informants varied more than ratings by male informants, which may explain why higher variances for men are not found in self-reports. Variances were higher in more developed, and effects of target sex were stronger in more individualistic societies. It seems that individualistic cultures enable a less restricted expression of personality, resulting in larger variances and particularly so among men. PMID:23559686

  18. Effects of Simultaneous Script Training on Use of Varied Mand Frames by Preschoolers with Autism.

    PubMed

    Sellers, Tyra P; Kelley, Kristen; Higbee, Thomas S; Wolfe, Katie

    2016-06-01

    Young children with autism may fail to mand using a range of frames (e.g., "I want," "May I have," "Please give me"). We examined the effects of simultaneous script training and script fading on acquisition and maintenance of varied mand frames with six preschool children with autism. For participants who did not demonstrate increased mand variability under fixed-ratio (FR) 1 conditions, we assessed the effects of post script-training extinction on response variability. Following training of up to four different mand frames, three of six participants emitted more varied mands under FR1 conditions relative to baseline. Posttraining extinction resulted in increased mand variability for two of the three remaining participants. Results are discussed in terms of considerations for both establishing and ensuring the persistence of varied verbal behavior among children with autism. PMID:27606217

  19. Dynamic analysis of hoisting viscous damping string with time-varying length

    NASA Astrophysics Data System (ADS)

    Zhang, P.; Bao, J. H.; Zhu, C. M.

    2013-07-01

    The nonlinear dynamic analysis of a hoisting viscous damping string with time-varying length is investigated. The hoisting string is modeled as a taut translating string with a rigid body attached at its low end. A systematic procedure for deriving the system model of hoisting viscoelastic string with time-varying is presented. The governing equations are developed employing the extended Hamilton's principle considering coupling of axial movement and flexural deformation of string. The Galerkin's method and the 4th Runge-Kutta method are employed to numerically analyze the resulting equations. The motions of elevator hoisting system are presented to illustrate the proposed mathematical models. The results of simulation show that the material viscous damping helps stabilize the transverse vibration. The modeling methods can represent the transverse vibration of hoisting viscous damping string with time-varying length.

  20. Characterization of spatially varying aberrations for wide field-of-view microscopy

    PubMed Central

    Zheng, Guoan; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2013-01-01

    We describe a simple and robust approach for characterizing the spatially varying pupil aberrations of microscopy systems. In our demonstration with a standard microscope, we derive the location-dependent pupil transfer functions by first capturing multiple intensity images at different defocus settings. Next, a generalized pattern search algorithm is applied to recover the complex pupil functions at ~350 different spatial locations over the entire field-of-view. Parameter fitting transforms these pupil functions into accurate 2D aberration maps. We further demonstrate how these aberration maps can be applied in a phase-retrieval based microscopy setup to compensate for spatially varying aberrations and to achieve diffraction-limited performance over the entire field-of-view. We believe that this easy-to-use spatially-varying pupil characterization method may facilitate new optical imaging strategies for a variety of wide field-of-view imaging platforms. PMID:23842300

  1. Experimental Demonstration of Frequency Autolocking an Optical Cavity Using a Time-Varying Kalman Filter

    NASA Astrophysics Data System (ADS)

    Schütte, Dirk; Hassen, S. Z. Sayed; Karvinen, Kai S.; Boyson, Toby K.; Kallapur, Abhijit G.; Song, Hongbin; Petersen, Ian R.; Huntington, Elanor H.; Heurs, Michèle

    2016-01-01

    We propose and demonstrate a new autolocking scheme using a three-mirror ring cavity consisting of a linear quadratic regulator and a time-varying Kalman filter. Our technique does not require a frequency scan to acquire resonance. We utilize the singular perturbation method to simplify our system dynamics and to permit the application of linear control techniques. The error signal combined with the transmitted power is used to estimate the cavity detuning. This estimate is used by a linear time-varying Kalman filter which enables the implementation of an optimal controller. The experimental results validate the controller design, and we demonstrate improved robustness to disturbances and a faster locking time than a traditional proportional-integral controller. More important, the time-varying Kalman filtering approach automatically reacquires lock for large detunings, where the error signal leaves its linear capture range, a feat which linear time-invariant controllers cannot achieve.

  2. Containment consensus with measurement noises and time-varying communication delays

    NASA Astrophysics Data System (ADS)

    Zhou, Feng; Wang, Zheng-Jie; Fan, Ning-Jun

    2015-02-01

    In this paper, we consider the containment consensus control problem for multi-agent systems with measurement noises and time-varying communication delays under directed networks. By using stochastic analysis tools and algebraic graph theory, we prove that the followers can converge to the convex hull spanned by the leaders in the sense of mean square if the allowed upper bound of the time-varying delays satisfies a certain sufficient condition. Moreover, the time-varying delays are asymmetric for each follower agent, and the time-delay-dependent consensus condition is derived. Finally, numerical simulations are provided to illustrate the effectiveness of the obtained theoretical results. Project supported by the National Natural Science Foundation of China (Grant No. 11102019), the Aeronautical Science Foundation of China (Grant No. 2013ZC72006), and the Research Foundation of Beijing Institute of Technology, China.

  3. Do Men Vary More than Women in Personality? A Study in 51 Cultures

    PubMed Central

    Borkenau, Peter; McCrae, Robert R.; Terracciano, Antonio

    2013-01-01

    Do men vary more than women in personality? Evolutionary, genetic, and cultural arguments suggest that hypothesis. In this study we tested it using 12,156 college student raters from 51 cultures who described a person they knew well on the 3rd-person version of the Revised NEO Personality Inventory. In most cultures, male targets varied more than female targets, and ratings by female informants varied more than ratings by male informants, which may explain why higher variances for men are not found in self-reports. Variances were higher in more developed, and effects of target sex were stronger in more individualistic societies. It seems that individualistic cultures enable a less restricted expression of personality, resulting in larger variances and particularly so among men. PMID:23559686

  4. Domain selection for the varying coefficient model via local polynomial regression

    PubMed Central

    Kong, Dehan; Bondell, Howard; Wu, Yichao

    2014-01-01

    In this article, we consider the varying coefficient model, which allows the relationship between the predictors and response to vary across the domain of interest, such as time. In applications, it is possible that certain predictors only affect the response in particular regions and not everywhere. This corresponds to identifying the domain where the varying coefficient is nonzero. Towards this goal, local polynomial smoothing and penalized regression are incorporated into one framework. Asymptotic properties of our penalized estimators are provided. Specifically, the estimators enjoy the oracle properties in the sense that they have the same bias and asymptotic variance as the local polynomial estimators as if the sparsity is known as a priori. The choice of appropriate bandwidth and computational algorithms are discussed. The proposed method is examined via simulations and a real data example. PMID:25506112

  5. Parasitic modulation of electromagnetic signals caused by time-varying plasma

    SciTech Connect

    Yang, Min Li, Xiaoping; Xie, Kai; Liu, Yanming

    2015-02-15

    An experiment on the propagation of electromagnetic (EM) signals in continuous time-varying plasma is described. The time-varying characteristics of plasma are considered to cause a parasitic modulation in both amplitude and phase, and the strength of this modulation, which carries the information of the electron density profile, is closely related to the plasma frequency and the incident wave frequency. Through theoretical analysis, we give an explanation and mechanism of the interaction between the continuous time-varying plasma and EM waves, which is verified by a comparative analysis with experiments performed under the same conditions. The effects of this modulation on the EM signals in the plasma sheath cannot be ignored.

  6. Simulating a charged spherical pendulum in time-varying electric and magnetic fields

    NASA Astrophysics Data System (ADS)

    Wellons, Mark; King, Frank; McAlpine, Todd

    2008-03-01

    We simulate and analyze the dynamics of a charged spherical pendulum in time-varying electric and magnetic fields. The time-varying electric field is directed perpendicular to the gravitational field and serves as a driving force for the pendulum. The time-varying magnetic field is directed parallel to the gravitational field and serves to deflect the motion of the pendulum. We analyze the dynamics of the system to determine the conditions for which chaotic behavior is observed. We also include viscosity to look for strange attractors. The equations of motion are integrated using Objective C and the graphical user interface, including the three dimensional graphical representation of the system, is developed using Cocoa.

  7. An example of slip instability resulting from displacement-varying strength

    USGS Publications Warehouse

    Lockner, D.; Byerlee, J.

    1990-01-01

    A rock cylinder, containing a clay-filled sawcut making an angle of 30?? to the sample axis, was deformed at constant confining and pore pressures and constant remote shortening rate. The sawcut surfaces contained a series of regularly spaced ridges and grooves oriented perpendicular to the direction of shear. The interaction of these grooved surfaces resulted in a sliding strength which varied periodically with displacement. By varying the effective machine stiffness through the use of an electronic feedback circuit, a range of stable and unstable slip behavior was achieved. In this way, we examined fault slip behavior which was dominated by displacement-dependent strength. ?? 1990 Birkha??user Verlag.

  8. H ∞ synchronization of the coronary artery system with input time-varying delay

    NASA Astrophysics Data System (ADS)

    Xiao-Meng, Li; Zhan-Shan, Zhao; Jing, Zhang; Lian-Kun, Sun

    2016-06-01

    This paper investigates the H ∞ synchronization of the coronary artery system with input delay and disturbance. We focus on reducing the conservatism of existing synchronization strategies. Base on the triple integral forms of the Lyapunov–Krasovskii functional (LKF), we utilize single and double integral forms of Wirtinger-based inequality to guarantee that the synchronization feedback controller has good performance against time-varying delay and external disturbance. The effectiveness of our strategy can be exhibited by simulations under the different time-varying delays and different disturbances. Project supported by the National Natural Science Foundation of China (Grant Nos. 61503280, 61403278, and 61272006).

  9. Orbites coadjointes et variétés caractéristiques

    NASA Astrophysics Data System (ADS)

    Baklouti, Ali; Dhieb, Sami; Manchon, Dominique

    2005-05-01

    The purpose of the present work is to describe a dequantization procedure for topological modules over a deformed algebra. We define the characteristic variety of a topological module as the common zeroes of the annihilator of the representation obtained by setting the deformation parameter to zero. On the other hand, the Poisson characteristic variety is defined as the common zeroes of the ideal obtained by considering the annihilator of the deformed representation, and only then setting the deformation parameter to zero. Using Gabber's theorem, we show the involutivity of the characteristic variety. The Poisson characteristic variety is indeed a Poisson subvariety of the underlying Poisson manifold. We compute explicitly the characteristic variety in several examples in the Poisson-linear case, including the dual of any exponential solvable Lie algebra. In the nilpotent case, we show that any coadjoint orbit appears as the Poisson characteristic variety of a well chosen topological module. Résumé:Nous présentons dans ce travail un procédé de déquantification pour des modules topologiques sur une algèbre déformée. Nous définissons la variété caractéristique d'un module topologique comme l'ensemble des zéros communs de l'annulateur de la représentation obtenue en annulant le paramètre de déformation. Nous définissons par ailleurs la variété de Poisson caractéristique comme l'ensemble des zéros communs de l'idéal obtenu par quotient en annulant le paramètre de déformation dans l'annulateur de la représentation déformée. Nous montrons à l'aide du théorème de Gabber l'involutivité de la variété caractéristique. La variété de Poisson caractéristique est une sous-variété de Poisson de la variété de Poisson sous-jacente. Nous explicitons la variété caractéristique dans plusieurs exemples, incluant le dual des algèbres de Lie résolubles exponentielles. Dans le cas nilpotent nous montrons que toute orbite coadjointe est la

  10. A new switching parameter varying optoelectronic delayed feedback model with computer simulation

    PubMed Central

    Liu, Lingfeng; Miao, Suoxia; Cheng, Mengfan; Gao, Xiaojing

    2016-01-01

    In this paper, a new switching parameter varying optoelectronic delayed feedback model is proposed and analyzed by computer simulation. This model is switching between two parameter varying optoelectronic delayed feedback models based on chaotic pseudorandom sequences. Complexity performance results show that this model has a high complexity compared to the original model. Furthermore, this model can conceal the time delay effectively against the auto-correlation function, delayed mutual information and permutation information analysis methods, and can extent the key space, which greatly improve its security. PMID:26923101

  11. Synchronization of Memristor-Based Coupling Recurrent Neural Networks With Time-Varying Delays and Impulses.

    PubMed

    Zhang, Wei; Li, Chuandong; Huang, Tingwen; He, Xing

    2015-12-01

    Synchronization of an array of linearly coupled memristor-based recurrent neural networks with impulses and time-varying delays is investigated in this brief. Based on the Lyapunov function method, an extended Halanay differential inequality and a new delay impulsive differential inequality, some sufficient conditions are derived, which depend on impulsive and coupling delays to guarantee the exponential synchronization of the memristor-based recurrent neural networks. Impulses with and without delay and time-varying delay are considered for modeling the coupled neural networks simultaneously, which renders more practical significance of our current research. Finally, numerical simulations are given to verify the effectiveness of the theoretical results. PMID:26054076

  12. Propagation of thickness-twist waves in elastic plates with periodically varying thickness and phononic crystals.

    PubMed

    Zhu, Jun; Chen, Weiqiu; Yang, Jiashi

    2014-09-01

    We study the propagation of thickness-twist (TT) waves in a crystal plate of AT-cut quartz with periodically varying, piecewise constant thickness. The scalar differential equation by Tiersten and Smythe is employed. The problem is found to be mathematically equivalent to the motion of an electron in a periodic potential field governed by Schrodinger's equation. An analytical solution is obtained. Numerical results show that the eigenvalue (frequency) spectrum of the waves has a band structure with allowed and forbidden bands. Therefore, for TT waves, plates with periodically varying thickness can be considered as phononic crystals. The effects of various parameters on the frequency spectrum are examined. PMID:24924785

  13. A new switching parameter varying optoelectronic delayed feedback model with computer simulation

    NASA Astrophysics Data System (ADS)

    Liu, Lingfeng; Miao, Suoxia; Cheng, Mengfan; Gao, Xiaojing

    2016-02-01

    In this paper, a new switching parameter varying optoelectronic delayed feedback model is proposed and analyzed by computer simulation. This model is switching between two parameter varying optoelectronic delayed feedback models based on chaotic pseudorandom sequences. Complexity performance results show that this model has a high complexity compared to the original model. Furthermore, this model can conceal the time delay effectively against the auto-correlation function, delayed mutual information and permutation information analysis methods, and can extent the key space, which greatly improve its security.

  14. Time-varying long term memory in the European Union stock markets

    NASA Astrophysics Data System (ADS)

    Sensoy, Ahmet; Tabak, Benjamin M.

    2015-10-01

    This paper proposes a new efficiency index to model time-varying inefficiency in stock markets. We focus on European stock markets and show that they have different degrees of time-varying efficiency. We observe that the 2008 global financial crisis has an adverse effect on almost all EU stock markets. However, the Eurozone sovereign debt crisis has a significant adverse effect only on the markets in France, Spain and Greece. For the late members, joining EU does not have a uniform effect on stock market efficiency. Our results have important implications for policy makers, investors, risk managers and academics.

  15. Classical-quantum arbitrarily varying wiretap channel: Ahlswede dichotomy, positivity, resources, super-activation

    NASA Astrophysics Data System (ADS)

    Boche, Holger; Cai, Minglai; Deppe, Christian; Nötzel, Janis

    2016-08-01

    We establish the Ahlswede dichotomy for arbitrarily varying classical-quantum wiretap channels, i.e., either the deterministic secrecy capacity of the channel is zero, or it equals its randomness-assisted secrecy capacity. We analyze the secrecy capacity of these channels when the sender and the receiver use various resources. It turns out that randomness, common randomness, and correlation as resources are very helpful for achieving a positive secrecy capacity. We prove the phenomenon "super-activation" for arbitrarily varying classical-quantum wiretap channels, i.e., two channels, both with zero deterministic secrecy capacity, if used together allow perfect secure transmission.

  16. Dynamic topography and gravity anomalies for fluid layers whose viscosity varies exponentially with depth

    NASA Technical Reports Server (NTRS)

    Revenaugh, Justin; Parsons, Barry

    1987-01-01

    Adopting the formalism of Parsons and Daly (1983), analytical integral equations (Green's function integrals) are derived which relate gravity anomalies and dynamic boundary topography with temperature as a function of wavenumber for a fluid layer whose viscosity varies exponentially with depth. In the earth, such a viscosity profile may be found in the asthenosphere, where the large thermal gradient leads to exponential decrease of viscosity with depth, the effects of a pressure increase being small in comparison. It is shown that, when viscosity varies rapidly, topography kernels for both the surface and bottom boundaries (and hence the gravity kernel) are strongly affected at all wavelengths.

  17. Generalized Projective Synchronization between Two Complex Networks with Time-Varying Coupling Delay

    NASA Astrophysics Data System (ADS)

    Sun, Mei; Zeng, Chang-Yan; Tian, Li-Xin

    2009-01-01

    Generalized projective synchronization (GPS) between two complex networks with time-varying coupling delay is investigated. Based on the Lyapunov stability theory, a nonlinear controller and adaptive updated laws are designed. Feasibility of the proposed scheme is proven in theory. Moreover, two numerical examples are presented, using the energy resource system and Lü's system [Physica A 382 (2007) 672] as the nodes of the networks. GPS between two energy resource complex networks with time-varying coupling delay is achieved. This study can widen the application range of the generalized synchronization methods and will be instructive for the demand-supply of energy resource in some regions of China.

  18. A new switching parameter varying optoelectronic delayed feedback model with computer simulation.

    PubMed

    Liu, Lingfeng; Miao, Suoxia; Cheng, Mengfan; Gao, Xiaojing

    2016-01-01

    In this paper, a new switching parameter varying optoelectronic delayed feedback model is proposed and analyzed by computer simulation. This model is switching between two parameter varying optoelectronic delayed feedback models based on chaotic pseudorandom sequences. Complexity performance results show that this model has a high complexity compared to the original model. Furthermore, this model can conceal the time delay effectively against the auto-correlation function, delayed mutual information and permutation information analysis methods, and can extent the key space, which greatly improve its security. PMID:26923101

  19. Varied line spacing plane holographic grating recorded by using uniform line spacing plane gratings.

    PubMed

    Qing, Ling; Gang, Wu; Bin, Liu; Qiuping, Wang

    2006-07-20

    Uniform line spacing plane gratings are introduced into a recording system to generate aspherical wavefronts for recording varied line spacing plane holographic gratings. Analytical expressions of groove parameters are derived to the fourth order. A ray-tracing validation algorithm is provided based on Fermat's principle and a local search method. The recording parameters are optimized to record a varied line spacing plane holographic grating with the aid of derived analytical expressions. A design example demonstrates the exactness of the analytical expressions and the superiority of recording optics with auxiliary gratings. PMID:16826244

  20. On controller tuning for a flexible-link manipulator with varying payload

    NASA Technical Reports Server (NTRS)

    Yurkovich, Stephen; Pachecho, Fernando E.

    1989-01-01

    In this article experimental results are presented for system identification and control of a single-link flexible manipulator carrying an unknown, varying payload. The control objective is to maintain endpoint position accuracy in the presence of flexure effects after rapid movement due to a rigid body slew-angle commanded position. Various time-domain parameter estimation techniques are used to identify ARMA model representations to be employed in controller tuning schemes for vibration compensation. Only endpoint acceleration measurements and motor shaft angle measurements are utilized in relatively simple PID control schemes, which are tuned as dictated by a varying, unknown payload.