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Sample records for ld map comparison

  1. A Review of Story Mapping Instruction for Secondary Students with LD

    ERIC Educational Resources Information Center

    Boon, Richard T.; Paal, Michael; Hintz, Anna-Maria; Cornelius-Freyre, Melissa

    2015-01-01

    The purpose of this article is to provide a review on the effectiveness of story mapping to improve the reading comprehension skills of middle and high school (Grades 6-12) students with learning disabilities (LD). An extensive review of the special education research-base revealed twelve (N = 12) story mapping intervention studies that met our…

  2. Distinct Linkage Disequilibrium (LD) Runs of Single Nucleotide Polymorphisms and Microsatellite Markers; Implications for Use of Mixed Marker Haplotypes in LD-based Mapping

    PubMed Central

    Lee, Kyung-A; Sohn, Kwang-Min; Cho, Seung-Hee; Hwang, Hyokkee; Kim, Sun Woo; Won, Hong-Hee; Kim, Hee-Jin; Kim, Min Ji; Cho, Sang Sun; Park, Jun Hee

    2007-01-01

    It has been suggested that the haplotypic relationship between microsatellite markers and single nucleotide polymorphisms (SNPs) is of considerable importance, as microsatellite markers can potentially be incorporated into haplotypes containing SNPs to increase marker density across a region of interest. However, SNPs and microsatellite markers have different mutation rates and durations, and it is conceivable that the linkage disequilibrium (LD) patterns between the genetic markers may considerably differ. We assessed the LD patterns using 1,661 SNPs and 65 microsatellite markers along chromosome 22 and investigated whether common patterns of LD between the two genetic markers are deduced from the results. The results demonstrated that the patterns of LD among microsatellite markers varied considerably and the LD runs of SNPs and microsatellite markers showed distinct patterns. Microsatellite markers have a much higher mutation rate and the evolution of microsatellite markers is a more complex process which has distinct mutation properties from those of SNPs. We consider that these might contribute to the different LD patterns between the two genetic markers. Therefore, it would seem inadvisable to make assumptions about persistence of LD across even a relatively small genetic distance among microsatellite markers and to construct mixed marker haplotypes/LD maps employing microsatellite markers. PMID:17596648

  3. Constructing a Genome-Wide LD Map of Wild A. gambiae Using Next-Generation Sequencing

    PubMed Central

    Wang, Xiaohong; Afrane, Yaw A.; Yan, Guiyun; Li, Jun

    2015-01-01

    Anopheles gambiae is the major malaria vector in Africa. Examining the molecular basis of A. gambiae traits requires knowledge of both genetic variation and genome-wide linkage disequilibrium (LD) map of wild A. gambiae populations from malaria-endemic areas. We sequenced the genomes of nine wild A. gambiae mosquitoes individually using next-generation sequencing technologies and detected 2,219,815 common single nucleotide polymorphisms (SNPs), 88% of which are novel. SNPs are not evenly distributed across A. gambiae chromosomes. The low SNP-frequency regions overlay heterochromatin and chromosome inversion domains, consistent with the lower recombinant rates at these regions. Nearly one million SNPs that were genotyped correctly in all individual mosquitoes with 99.6% confidence were extracted from these high-throughput sequencing data. Based on these SNP genotypes, we constructed a genome-wide LD map for wild A. gambiae from malaria-endemic areas in Kenya and made it available through a public Website. The average size of LD blocks is less than 40 bp, and several large LD blocks were also discovered clustered around the para gene, which is consistent with the effect of insecticide selective sweeps. The SNPs and the LD map will be valuable resources for scientific communities to dissect the A. gambiae genome. PMID:26421280

  4. Comparison study on effectiveness of pentoxifyllin with LD to prevent recurrent endometriosis

    PubMed Central

    Ghahiri, Ataollah; Najafian, Aida; Ghasemi, Mojdeh; Najafian, Alireza

    2012-01-01

    Background: About 75% of the symptomatic patients who involved with endometriosis have pelvic pain and dysmenorrhea. Pentoxifyllin is one of the drugs that according to its mechanism could be effective for pain relief of endometriosis which has been used for endometriosis treatment recently. Objective: We conducted a comparative study for detecting the effect of pentoxifylin (as an immonomodelator) in preventing recurrence endometriotic pain with pentoxifylin plus a combined contraceptive pill with low dose estrogen (LD) and also the LD pill alone. Materials and Methods: This was a comparative clinical trial on 83 patients with the chief complaint (CC) of pain (dysmenorrheal /or pelvic pain) and with the end diagnosis of endometriosis, in an operative laparoscopy. Patients, dividing to 3 groups, were treated with pentoxifylin, pentoxifylin+LD and LD alone for 10 months. The severity of pain (dismenorhea and/or pelvic pain) was detected by visual analogue scale (VAS) before and after the treatment. The severity of endometriosis in the patients was: I in class I and II in class II and III in class III. The groups were matched for the pain. The number of the patients in group 1, 2 and 3 were 28, 28 and 27 respectively. Results: The pain was reduced in the groups of pentoxifylin+LD (p<0.001) and LD alone (p=0.00). The pain relief was not significant in the group of pentoxifylin alone (p=0.136). After treatment, the severity of pain was not significantly different between the LD group and the LD+penthoxyfillin group, but there was difference between these two groups and the group of penthoxyfillin alone. Conclusion: This study showed that penthoxyfillin actually could not have any effect on the pain relief of endometriosis. It also made it clear that penthoxyfillin could not increase the efficacy of LD when used with this medication. PMID:25242996

  5. Metrics for comparison of crystallographic maps

    SciTech Connect

    Urzhumtsev, Alexandre; Afonine, Pavel V.; Lunin, Vladimir Y.; Terwilliger, Thomas C.; Adams, Paul D.

    2014-10-01

    Numerical comparison of crystallographic contour maps is used extensively in structure solution and model refinement, analysis and validation. However, traditional metrics such as the map correlation coefficient (map CC, real-space CC or RSCC) sometimes contradict the results of visual assessment of the corresponding maps. This article explains such apparent contradictions and suggests new metrics and tools to compare crystallographic contour maps. The key to the new methods is rank scaling of the Fourier syntheses. The new metrics are complementary to the usual map CC and can be more helpful in map comparison, in particular when only some of their aspects, such as regions of high density, are of interest.

  6. Comparison of ASAT, CK, CK-MB, and LD for the estimation of acute myocardial infarct size in man.

    PubMed

    Grande, P; Christiansen, C; Alstrup, K

    1983-03-14

    The purpose of this study was to set up a simple and reliable procedure for estimating acute myocardial infarct (AMI) size by measuring serum enzymes in a few daily blood samples. Peak enzyme values and estimated infarct size from one, two, or three daily samples of aspartate aminotransferase (ASAT), creatine kinase (CK), CK-MB, and lactate dehydrogenase (LD) were compared with the extent of myocardial necrosis measured at autopsy in 22 patients who died from AMI. The correlation between the extent of the necrosis measured and peak serum enzymes from one daily blood sample was highest for CK-MB (r = 0.78) and LD (r = 0.73) compared to CK (r = 0.68) and ASAT (r = 0.67). To obtain a significant correlation, however, two patients had to be excluded from the ASAT and LD analyses. No significant improvement was obtained by more frequent blood sampling. Estimation of infarct size did not improve the correlation significantly for any enzyme, although the coefficient of correlation for CK-MB increased slightly (r = 0.83). Serum CK-MB determination provides a semiquantitative estimate of infarct size, but the other enzymes may give erroneous estimates owing to lesser cardiospecificity. PMID:6851141

  7. Identification of putative candidate genes for red rot resistance in sugarcane (Saccharum species hybrid) using LD-based association mapping.

    PubMed

    Singh, Ram K; Banerjee, Nandita; Khan, M S; Yadav, Sonia; Kumar, Sanjeev; Duttamajumder, S K; Lal, Ram Ji; Patel, Jinesh D; Guo, H; Zhang, Dong; Paterson, Andrew H

    2016-06-01

    Red rot is a serious disease of sugarcane caused by the fungus Colletotrichum falcatum that has a colossal damage potential. The fungus, prevalent mainly in the Indian sub-continent, keeps on producing new pathogenic strains leading to breakdown of resistance in newly released varieties and hence the deployment of linked markers for marker-assisted selection for resistance to this disease can fine tune the breeding programme. This study based on a panel of 119 sugarcane genotypes fingerprinted for 944 SSR alleles was undertaken with an aim to identify marker-trait associations (MTAs) for resistance to red rot. Mixed linear model containing population structure and kinship as co-factor detected four MTAs that were able to explain 10-16 % of the trait variation, individually. Among the four MTAs, EST sequences diagnostic of three could be BLAST searched to the sorghum genome with significant sequence homology. Several genes encoding important plant defence related proteins, viz., cytochrome P450, Glycerol-3-phosphate transporter-1, MAP Kinase-4, Serine/threonine-protein kinase, Ring finger domain protein and others were localized to the vicinity of these MTAs. These positional candidate genes are worth of further investigation and possibly these could contribute directly to red rot resistance, and may find a potential application in marker-assisted sugarcane breeding. PMID:26961118

  8. Metrics for comparison of crystallographic maps

    DOE PAGESBeta

    Urzhumtsev, Alexandre; Afonine, Pavel V.; Lunin, Vladimir Y.; Terwilliger, Thomas C.; Adams, Paul D.

    2014-10-01

    Numerical comparison of crystallographic contour maps is used extensively in structure solution and model refinement, analysis and validation. However, traditional metrics such as the map correlation coefficient (map CC, real-space CC or RSCC) sometimes contradict the results of visual assessment of the corresponding maps. This article explains such apparent contradictions and suggests new metrics and tools to compare crystallographic contour maps. The key to the new methods is rank scaling of the Fourier syntheses. The new metrics are complementary to the usual map CC and can be more helpful in map comparison, in particular when only some of their aspects,more » such as regions of high density, are of interest.« less

  9. LD or Not?

    ERIC Educational Resources Information Center

    Bullock, Lyndal; And Others

    The booklet, designed to accompany a videotape, explains the similarities and differences among students with learning problems, specific learning disabilities (LD), mild mental retardation, or behavioral disorders. Specific implications for special education in Illinois are outlined. The underlying problem of over-identification of LD students is…

  10. Large-Scale East-Asian eQTL Mapping Reveals Novel Candidate Genes for LD Mapping and the Genomic Landscape of Transcriptional Effects of Sequence Variants

    PubMed Central

    Narahara, Maiko; Higasa, Koichiro; Nakamura, Seiji; Tabara, Yasuharu; Kawaguchi, Takahisa; Ishii, Miho; Matsubara, Kenichi; Matsuda, Fumihiko; Yamada, Ryo

    2014-01-01

    Profiles of sequence variants that influence gene transcription are very important for understanding mechanisms that affect phenotypic variation and disease susceptibility. Using genotypes at 1.4 million SNPs and a comprehensive transcriptional profile of 15,454 coding genes and 6,113 lincRNA genes obtained from peripheral blood cells of 298 Japanese individuals, we mapped expression quantitative trait loci (eQTLs). We identified 3,804 cis-eQTLs (within 500 kb from target genes) and 165 trans-eQTLs (>500 kb away or on different chromosomes). Cis-eQTLs were often located in transcribed or adjacent regions of genes; among these regions, 5′ untranslated regions and 5′ flanking regions had the largest effects. Epigenetic evidence for regulatory potential accumulated in public databases explained the magnitude of the effects of our eQTLs. Cis-eQTLs were often located near the respective target genes, if not within genes. Large effect sizes were observed with eQTLs near target genes, and effect sizes were obviously attenuated as the eQTL distance from the gene increased. Using a very stringent significance threshold, we identified 165 large-effect trans-eQTLs. We used our eQTL map to assess 8,069 disease-associated SNPs identified in 1,436 genome-wide association studies (GWAS). We identified genes that might be truly causative, but GWAS might have failed to identify for 148 out of the GWAS-identified SNPs; for example, TUFM (P = 3.3E-48) was identified for inflammatory bowel disease (early onset); ZFP90 (P = 4.4E-34) for ulcerative colitis; and IDUA (P = 2.2E-11) for Parkinson's disease. We identified four genes (P<2.0E-14) that might be related to three diseases and two hematological traits; each expression is regulated by trans-eQTLs on a different chromosome than the gene. PMID:24956270

  11. Large-scale East-Asian eQTL mapping reveals novel candidate genes for LD mapping and the genomic landscape of transcriptional effects of sequence variants.

    PubMed

    Narahara, Maiko; Higasa, Koichiro; Nakamura, Seiji; Tabara, Yasuharu; Kawaguchi, Takahisa; Ishii, Miho; Matsubara, Kenichi; Matsuda, Fumihiko; Yamada, Ryo

    2014-01-01

    Profiles of sequence variants that influence gene transcription are very important for understanding mechanisms that affect phenotypic variation and disease susceptibility. Using genotypes at 1.4 million SNPs and a comprehensive transcriptional profile of 15,454 coding genes and 6,113 lincRNA genes obtained from peripheral blood cells of 298 Japanese individuals, we mapped expression quantitative trait loci (eQTLs). We identified 3,804 cis-eQTLs (within 500 kb from target genes) and 165 trans-eQTLs (>500 kb away or on different chromosomes). Cis-eQTLs were often located in transcribed or adjacent regions of genes; among these regions, 5' untranslated regions and 5' flanking regions had the largest effects. Epigenetic evidence for regulatory potential accumulated in public databases explained the magnitude of the effects of our eQTLs. Cis-eQTLs were often located near the respective target genes, if not within genes. Large effect sizes were observed with eQTLs near target genes, and effect sizes were obviously attenuated as the eQTL distance from the gene increased. Using a very stringent significance threshold, we identified 165 large-effect trans-eQTLs. We used our eQTL map to assess 8,069 disease-associated SNPs identified in 1,436 genome-wide association studies (GWAS). We identified genes that might be truly causative, but GWAS might have failed to identify for 148 out of the GWAS-identified SNPs; for example, TUFM (P = 3.3E-48) was identified for inflammatory bowel disease (early onset); ZFP90 (P = 4.4E-34) for ulcerative colitis; and IDUA (P = 2.2E-11) for Parkinson's disease. We identified four genes (P<2.0E-14) that might be related to three diseases and two hematological traits; each expression is regulated by trans-eQTLs on a different chromosome than the gene. PMID:24956270

  12. LD in AD 2000.

    ERIC Educational Resources Information Center

    Smith, Bert Kruger

    The author discusses potential problems and benefits for learning disabled (LD) students in the year 2000. Considered are developments in three areas: human engineering (such as the role of amniocentesis in prevention of disabilities), education (including new audiovisual technology and a restructuring of secondary education), and human…

  13. Wage Differentials between College Graduates with and without LD.

    ERIC Educational Resources Information Center

    Dickinson, David L.; Verbeek, Roelant L.

    2002-01-01

    This study compared employment and wage figures for 97 college graduates previously diagnosed with learning disabilities (LD) and 1,130 comparison adults. The observed lower wages for individuals with LD were found to be primarily due to differences in productivity, although the possibility that some of this differential is due to discrimination…

  14. [Why should LD be discussed now?].

    PubMed

    Futakami, S

    1999-05-01

    The term learning disability was first used in 1962 by Kirk S A in his textbook. In Japan the term was adopted as a substitute term for MBD in the 1970s. At present many professionals, especially on education and psychology, are interested with LD. The role of child neurologist is discussed here from three viewpoint: the term and definition, LD as a brain dysfunction, and LD in the child neurology. For collaboration with education and psychology, child neurologist should know more about LD and make efforts to find the etiology and mechanism of LD. PMID:10355261

  15. Complement binding to Leishmania donovani promastigotes (LD)

    SciTech Connect

    Puentes, S.M.; Bates, P.A.; Dwyer, D.M.; Joiner, K.A.

    1986-03-01

    To study the binding and processing of C3 on LD, parasites in various phases of growth were incubated in human serum deficient in complement component 8 containing /sup 125/I-C3. Uptake of /sup 125/I-C3 is rapid, peaking at 1.7-2.1 x 10/sup 6/ C3 molecules bound per parasite at 15 minutes for all growth phases, and decreases thereafter with continued incubation. One half of total C3 bound is spontaneously released by 90 minutes of incubation with all LD phases and occurs at a similar rate for LD washed free of serum and incubated at 37/sup 0/ C in buffer. As assessed by SDS-PAGE autoradiography, C3 on the surface of LD is present as C3b (36 to 50%) and iC3b (50 to 65%), linked covalently via a bond resistant to hydroxylamine treatment, presumably an amide linkage. Immunoblot analysis of purified membranes from serum-incubated LD, using rabbit antibody to C3 and LD surface constituents, strongly suggests that a major C3 acceptor is the LD acid phosphatase (AP). These results, in conjunction with recent studies, suggest a previously unrecognized role of AP as a C3 acceptor and, thus, as a molecule potentially involved in parasite binding and uptake.

  16. Comparison of genome-wide variation between Malawians and African ancestry HapMap populations.

    PubMed

    Joubert, Bonnie R; North, Kari E; Wang, Yunfei; Mwapasa, Victor; Franceschini, Nora; Meshnick, Steven R; Lange, Ethan M

    2010-06-01

    Understanding genetic variation between populations is important because it affects the portability of human genome-wide analytical methods. We compared genetic variation and substructure between Malawians and other African and non-African HapMap populations. Allele frequencies and adjacent linkage disequilibrium (LD) were measured for 617 715 single nucleotide polymorphisms (SNPs) across subject genomes. Allele frequencies in the Malawian population (N=226) were highly correlated with allele frequencies in HapMap populations of African ancestry (AFA, N=376), namely Yoruban in Ibadan, Nigeria (Spearman's r(2)=0.97), Luhya in Webuye, Kenya (r(2)=0.97), African Americans in the southwest United States (r(2)=0.94) and Maasai in Kinyawa, Kenya (r(2)=0.91). This correlation was much lower between Malawians and other ancestry populations (r(2)<0.52). LD correlations between Malawians and HapMap populations were strongest for the populations of AFA (AFA r(2)>0.82, other ancestries r(2)<0.57). Principal components analyses revealed little population substructure within our Malawi sample but provided clear distinction between Malawians, AFA populations and two European populations. Five SNPs within the lactase gene (LCT) had substantially different allele frequencies between the Malawi population and Maasai in Kenyawa, Kenya (rs3769013, rs730005, rs3769012, rs2304370; P-values <1 x 10(-33)). PMID:20485449

  17. Comparison of Mixed-Model Approaches for Association Mapping

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Association-mapping methods promise to overcome the limitations of linkage-mapping methods. The main objectives of this study were to (i) evaluate various methods for association mapping in the autogamous species wheat using an empirical data set, (ii) determine a marker-based kinship matrix using a...

  18. Maize centromere mapping: A comparison of physical and genetic strategies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The location of chromosome centromeres in various maize genetic maps relative to physical maps has not been consistently and clearly identified due to the paucity of markers and low recombination in the highly heterochromatic centromeric and flanking regions. Centromere positions on seven maize chro...

  19. Accuracy, resolution, and cost comparisons between small format and mapping cameras for environmental mapping

    NASA Technical Reports Server (NTRS)

    Clegg, R. H.; Scherz, J. P.

    1975-01-01

    Successful aerial photography depends on aerial cameras providing acceptable photographs within cost restrictions of the job. For topographic mapping where ultimate accuracy is required only large format mapping cameras will suffice. For mapping environmental patterns of vegetation, soils, or water pollution, 9-inch cameras often exceed accuracy and cost requirements, and small formats may be better. In choosing the best camera for environmental mapping, relative capabilities and costs must be understood. This study compares resolution, photo interpretation potential, metric accuracy, and cost of 9-inch, 70mm, and 35mm cameras for obtaining simultaneous color and color infrared photography for environmental mapping purposes.

  20. Comparison and quantitative verification of mapping algorithms for whole genome bisulfite sequencing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Coupling bisulfite conversion with next-generation sequencing (Bisulfite-seq) enables genome-wide measurement of DNA methylation, but poses unique challenges for mapping. However, despite a proliferation of Bisulfite-seq mapping tools, no systematic comparison of their genomic coverage and quantitat...

  1. Mare Crisium area topography - A comparison of earth-based radar and Apollo mapping camera results

    NASA Technical Reports Server (NTRS)

    Zisk, S.

    1978-01-01

    An earth-based radar topography (ERT) map has been constructed of the Mare Crisium area. Systematic and random sources of error are discussed. A comparison between the ERT map and Lunar Topographic Orthophotomaps shows a random mean discrepancy of less than 100 m between the two maps, except for small-scale (20 km or less in diameter) features, where systematic smoothing reduces the ERT elevation contrast

  2. DNA sequence of a gene encoding a BALB/c mouse Ld transplantation antigen.

    PubMed

    Moore, K W; Sher, B T; Sun, Y H; Eakle, K A; Hood, L

    1982-02-01

    The sequence of a gene, denoted 27.5, encoding a transplantation antigen for the BALB/c mouse has been determined. Gene transfer studies and comparison of the translated sequence with the partial amino acid sequence of the Ld transplantation antigen establish that gene 27.5 encodes an Ld polypeptide. A comparison of the gene 27.5 sequence with several complementary DNA sequences suggests that the BALB/c mouse may contain a number of closely related L-like genes. Gene 27.5 has eight exons that correlate with the structural domains of the transplantation antigen. PMID:7058332

  3. Uncertainties in ecosystem service maps: a comparison on the European scale.

    PubMed

    Schulp, Catharina J E; Burkhard, Benjamin; Maes, Joachim; Van Vliet, Jasper; Verburg, Peter H

    2014-01-01

    Safeguarding the benefits that ecosystems provide to society is increasingly included as a target in international policies. To support such policies, ecosystem service maps are made. However, there is little attention for the accuracy of these maps. We made a systematic review and quantitative comparison of ecosystem service maps on the European scale to generate insights in the uncertainty of ecosystem service maps and discuss the possibilities for quantitative validation. Maps of climate regulation and recreation were reasonably similar while large uncertainties among maps of erosion protection and flood regulation were observed. Pollination maps had a moderate similarity. Differences among the maps were caused by differences in indicator definition, level of process understanding, mapping aim, data sources and methodology. Absence of suitable observed data on ecosystem services provisioning hampers independent validation of the maps. Consequently, there are, so far, no accurate measures for ecosystem service map quality. Policy makers and other users need to be cautious when applying ecosystem service maps for decision-making. The results illustrate the need for better process understanding and data acquisition to advance ecosystem service mapping, modelling and validation. PMID:25337913

  4. Uncertainties in Ecosystem Service Maps: A Comparison on the European Scale

    PubMed Central

    Schulp, Catharina J. E.; Burkhard, Benjamin; Maes, Joachim; Van Vliet, Jasper; Verburg, Peter H.

    2014-01-01

    Safeguarding the benefits that ecosystems provide to society is increasingly included as a target in international policies. To support such policies, ecosystem service maps are made. However, there is little attention for the accuracy of these maps. We made a systematic review and quantitative comparison of ecosystem service maps on the European scale to generate insights in the uncertainty of ecosystem service maps and discuss the possibilities for quantitative validation. Maps of climate regulation and recreation were reasonably similar while large uncertainties among maps of erosion protection and flood regulation were observed. Pollination maps had a moderate similarity. Differences among the maps were caused by differences in indicator definition, level of process understanding, mapping aim, data sources and methodology. Absence of suitable observed data on ecosystem services provisioning hampers independent validation of the maps. Consequently, there are, so far, no accurate measures for ecosystem service map quality. Policy makers and other users need to be cautious when applying ecosystem service maps for decision-making. The results illustrate the need for better process understanding and data acquisition to advance ecosystem service mapping, modelling and validation. PMID:25337913

  5. Comparison IBEX Maps 1 and 2 - Duration: 62 seconds.

    NASA Video Gallery

    The IBEX science team compares the first and second maps to reveal whether there are time variations in the Ribbon or the more distributed emissions around the ribbon. This animation fades between ...

  6. Coronal Modeling with Flux-Evolved Maps: Comparison with Observations

    NASA Astrophysics Data System (ADS)

    Linker, J.; Downs, C.; Lionello, R.; Caplan, R. M.; Mikic, Z.; Riley, P.; Henney, C. J.; Arge, C. N.

    2014-12-01

    MHD simulations of the solar corona rely on maps of the solar magnetic field for input as boundary conditions. These "synoptic" maps (available from a number of ground-based and space-based solar observatories) are built up over a solar rotation. A well-known problem with this approach is that the maps contain data that is as much as 27 days old. The Sun's magnetic flux is always evolving, and these changes in the flux affect coronal and heliospheric structure. Flux evolution models can in principle provide a more accurate specification, by estimating the likely state of the photospheric magnetic field on unobserved portions of the Sun. The Air Force Data Assimilative Photospheric flux Transport (ADAPT) model (Arge et al. 2010) is especially well suited for this purpose. ADAPT can also incorporate information from helioseismic acoustic images to estimate the emergence of new active regions on the Sun's far side. In this presentation we describe MHD models with boundary conditions derived from ADAPT maps. We investigate the June-August 2010 time period, when there was significant coronal hole evolution observed by the STEREO and SDO spacecraft. We compare model results using ADAPT maps, including those with far side data, as well as models using traditional synoptic maps, to STEREO EUVI and SDO AIA data. Research supported by AFOSR & NASA.

  7. A comparison of contour maps derived from independent methods of measuring lunar magnetic fields

    NASA Technical Reports Server (NTRS)

    Lichtenstein, B. R.; Coleman, P. J., Jr.; Russell, C. T.

    1978-01-01

    Computer-generated contour maps of strong lunar remanent magnetic fields are presented and discussed. The maps, obtained by previously described (Eliason and Soderblom, 1977) techniques, are derived from a variety of direct and indirect measurements from Apollo 15 and 16 and Explorer 35 magnetometer and electron reflection data. A common display format is used to facilitate comparison of the maps over regions of overlapping coverage. Most large scale features of either weak or strong magnetic field regions are found to correlate fairly well on all the maps considered.

  8. Biochemical Properties and Mechanism of Action of Enterocin LD3 Purified from Enterococcus hirae LD3.

    PubMed

    Gupta, Aabha; Tiwari, Santosh Kumar; Netrebov, Victoria; Chikindas, Michael L

    2016-09-01

    Enterocin LD3 was purified using activity-guided multistep chromatography techniques such as cation-exchange and gel-filtration chromatography. The preparation's purity was tested using reverse-phase ultra-performance liquid chromatography. The specific activity was tested to be 187.5 AU µg(-1) with 13-fold purification. Purified enterocin LD3 was heat stable up to 121 °C (at 15 psi pressure) and pH 2-6. The activity was lost in the presence of papain, reduced by proteinase K, pepsin and trypsin, but was unaffected by amylase and lipase, suggesting proteinaceous nature of the compound and no role of carbohydrate and lipid moieties in the activity. MALDI-TOF/MS analysis of purified enterocin LD3 resolved m/z 4114.6, and N-terminal amino acid sequence was found to be H2NQGGQANQ-COOH suggesting a new bacteriocin. Dissipation of membrane potential, loss of internal ATP and bactericidal effect were recorded when indicator strain Micrococcus luteus was treated with enterocin LD3. It inhibited Gram-positive and Gram-negative bacteria including human pathogens such as Staphylococcus aureus, Pseudomonas fluorescens, Pseudomonas aeruginosa, Salmonella typhi, Shigella flexneri, Listeria monocytogenes, Escherichia coli O157:H7, E. coli (urogenic, a clinical isolate) and Vibrio sp. These properties of purified enterocin LD3 suggest its applications as a food biopreservative and as an alternative to clinical antibiotics. PMID:27145777

  9. Maps as Representations: Expert Novice Comparison of Projection Understanding.

    ERIC Educational Resources Information Center

    Anderson, Kathleen C.; Leinhardt, Gaea

    2002-01-01

    Examined how varying levels of geographic expertise facilitated reasoning with maps as representations of the earth's surface. Found that geography experts performed significantly better than novices and preservice teachers, and experts' performance was differentiated by the reasoning in which they engaged. Explored implications for understanding…

  10. Understanding Metaphorical Expressions: Conventionality, Mappings, and Comparison Processes

    ERIC Educational Resources Information Center

    Lai, Vicky Tzuyin

    2009-01-01

    Metaphorical expressions appear once every twenty words in everyday language, and play a central role in communication. Some cognitive linguistic theories propose that understanding metaphorical expressions requires mappings from one conceptual domain to the other. My research uses Event-Related Potentials to examine the processing, the…

  11. Comparison of mapping approaches of design annual maximum daily precipitation

    NASA Astrophysics Data System (ADS)

    Szolgay, J.; Parajka, J.; Kohnová, S.; Hlavčová, K.

    2009-05-01

    In this study 2-year and 100-year annual maximum daily precipitation for rainfall-runoff studies and estimating flood hazard were mapped. The daily precipitation measurements at 23 climate stations from 1961-2000 were used in the upper Hron basin in central Slovakia. The choice of data preprocessing and interpolation methods was guided by their practical applicability and acceptance in the engineering hydrologic community. The main objective was to discuss the quality and properties of maps of design precipitation with a given return period with respect to the expectations of the end user. Four approaches to the preprocessing of annual maximum 24-hour precipitation data were used, and three interpolation methods employed. The first approach is the direct mapping of at-site estimates of distribution function quantiles; the second is the direct mapping of local estimates of the three parameters of the GEV distribution. In the third, the daily precipitation totals were interpolated into a regular grid network, and then the time series of the maximum daily precipitation totals in each grid point of the selected region were statistically analysed. In the fourth, the spatial distribution of the design precipitation was modeled by quantiles predicted by regional precipitation frequency analysis using the Hosking and Wallis procedure. The three interpolation methods used were the inverse distance weighting, nearest neighbor and the kriging method. Visual inspection and jackknife cross-validation were used to compare the combination of approaches.

  12. The Leishmania donovani histidine acid ecto-phosphatase LdMAcP: insight into its structure and function

    PubMed Central

    Papadaki, Amalia; Politou, Anastasia S.; Smirlis, Despina; Kotini, Maria P.; Kourou, Konstadina; Papamarcaki, Thomais; Boleti, Haralabia

    2015-01-01

    Acid ecto-phosphatase activity has been implicated in Leishmania donovani promastigote virulence. In the present study, we report data contributing to the molecular/structural and functional characterization of the L. donovani LdMAcP (L. donovani membrane acid phosphatase), member of the histidine acid phosphatase (HAcP) family. LdMAcP is membrane-anchored and shares high sequence identity with the major secreted L. donovani acid phosphatases (LdSAcPs). Sequence comparison of the LdMAcP orthologues in Leishmania sp. revealed strain polymorphism and species specificity for the L. donovani complex, responsible for visceral leishmaniasis (Khala azar), proposing thus a potential value of LdMAcP as an epidemiological or diagnostic tool. The extracellular orientation of the LdMAcP catalytic domain was confirmed in L. donovani promastigotes, wild-type (wt) and transgenic overexpressing a recombinant LdMAcP–mRFP1 (monomeric RFP1) chimera, as well as in transiently transfected mammalian cells expressing rLdMAcP–His. For the first time it is demonstrated in the present study that LdMAcP confers tartrate resistant acid ecto-phosphatase activity in live L. donovani promastigotes. The latter confirmed the long sought molecular identity of at least one enzyme contributing to this activity. Interestingly, the L. donovani rLdMAcP–mRFP1 promastigotes generated in this study, showed significantly higher infectivity and virulence indexes than control parasites in the infection of J774 mouse macrophages highlighting thereby a role for LdMAcP in the parasite's virulence. PMID:25695743

  13. The Leishmania donovani histidine acid ecto-phosphatase LdMAcP: insight into its structure and function.

    PubMed

    Papadaki, Amalia; Politou, Anastasia S; Smirlis, Despina; Kotini, Maria P; Kourou, Konstadina; Papamarcaki, Thomais; Boleti, Haralabia

    2015-05-01

    Acid ecto-phosphatase activity has been implicated in Leishmania donovani promastigote virulence. In the present study, we report data contributing to the molecular/structural and functional characterization of the L. donovani LdMAcP (L. donovani membrane acid phosphatase), member of the histidine acid phosphatase (HAcP) family. LdMAcP is membrane-anchored and shares high sequence identity with the major secreted L. donovani acid phosphatases (LdSAcPs). Sequence comparison of the LdMAcP orthologues in Leishmania sp. revealed strain polymorphism and species specificity for the L. donovani complex, responsible for visceral leishmaniasis (Khala azar), proposing thus a potential value of LdMAcP as an epidemiological or diagnostic tool. The extracellular orientation of the LdMAcP catalytic domain was confirmed in L. donovani promastigotes, wild-type (wt) and transgenic overexpressing a recombinant LdMAcP-mRFP1 (monomeric RFP1) chimera, as well as in transiently transfected mammalian cells expressing rLdMAcP-His. For the first time it is demonstrated in the present study that LdMAcP confers tartrate resistant acid ecto-phosphatase activity in live L. donovani promastigotes. The latter confirmed the long sought molecular identity of at least one enzyme contributing to this activity. Interestingly, the L. donovani rLdMAcP-mRFP1 promastigotes generated in this study, showed significantly higher infectivity and virulence indexes than control parasites in the infection of J774 mouse macrophages highlighting thereby a role for LdMAcP in the parasite's virulence. PMID:25695743

  14. Syntactic Complexity in Written Expression of LD College Writers.

    ERIC Educational Resources Information Center

    Vogel, Susan A.

    1985-01-01

    Thirty-three college students in a Learning Disabilities (LD) program were compared with thirty-three non-LD peers in syntactic complexity of their writing. LD Ss did not differ significantly on the Syntactic Density Scoring (SDS) procedure for the corrected SDS (CSDS) score, but they did differ on two variables thought to be more sensitive…

  15. Morphological mapping of Martian outflow channels. [to facilitate terrestrial landform comparisons

    NASA Technical Reports Server (NTRS)

    Baker, V. R.; Kochel, R. C.

    1978-01-01

    Geomorphic mapping of selected portions of Martian outflow channels was performed in order to facilitate comparisons to terrestrial landforms. We interpret the maps to illustrate a correspondence between Martian channel features and terrestrial landforms developed by catastrophic flood erosion in the Channeled Scabland. The following features all occur in remarkably similar arrangements on the flood-channel floors of both planets: streamlined uplands, longitudinal grooves, scour marks, inner channel cataracts, etched zones, and possible pendant bars.

  16. Comparison of biometrical models for joint linkage association mapping

    PubMed Central

    Würschum, T; Liu, W; Gowda, M; Maurer, H P; Fischer, S; Schechert, A; Reif, J C

    2012-01-01

    Joint linkage association mapping (JLAM) combines the advantages of linkage mapping and association mapping, and is a powerful tool to dissect the genetic architecture of complex traits. The main goal of this study was to use a cross-validation strategy, resample model averaging and empirical data analyses to compare seven different biometrical models for JLAM with regard to the correction for population structure and the quantitative trait loci (QTL) detection power. Three linear models and four linear mixed models with different approaches to control for population stratification were evaluated. Models A, B and C were linear models with either cofactors (Model-A), or cofactors and a population effect (Model-B), or a model in which the cofactors and the single-nucleotide polymorphism effect were modeled as nested within population (Model-C). The mixed models, D, E, F and G, included a random population effect (Model-D), or a random population effect with defined variance structure (Model-E), a kinship matrix defining the degree of relatedness among the genotypes (Model-F), or a kinship matrix and principal coordinates (Model-G). The tested models were conceptually different and were also found to differ in terms of power to detect QTL. Model-B with the cofactors and a population effect, effectively controlled population structure and possessed a high predictive power. The varying allele substitution effects in different populations suggest as a promising strategy for JLAM to use Model-B for the detection of QTL and then to estimate their effects by applying Model-C. PMID:21878984

  17. Maps of averaged spectral deviations from soil lines and their comparison with traditional soil maps

    NASA Astrophysics Data System (ADS)

    Rukhovich, D. I.; Rukhovich, A. D.; Rukhovich, D. D.; Simakova, M. S.; Kulyanitsa, A. L.; Bryzzhev, A. V.; Koroleva, P. V.

    2016-07-01

    The analysis of 34 cloudless fragments of Landsat 5, 7, and 8 images (1985-2014) on the territory of Plavsk, Arsen'evsk, and Chern districts of Tula oblast has been performed. It is shown that bare soil surface on the RED-NIR plots derived from the images cannot be described in the form of a sector of spectral plane as it can be done for the NDVI values. The notion of spectral neighborhood of soil line (SNSL) is suggested. It is defined as the sum of points of the RED-NIR spectral space, which are characterized by spectral characteristics of the bare soil applied for constructing soil lines. The way of the SNSL separation along the line of the lowest concentration density of points on the RED-NIR spectral space is suggested. This line separates bare soil surface from vegetating plants. The SNSL has been applied to construct soil line (SL) for each of the 34 images and to delineate bare soil surface on them. Distances from the points with averaged RED-NIR coordinates to the SL have been calculated using the method of moving window. These distances can be referred to as averaged spectral deviations (ASDs). The calculations have been performed strictly for the SNSL areas. As a result, 34 maps of ASDs have been created. These maps contain ASD values for 6036 points of a grid used in the study. Then, the integral map of normalized ASD values has been built with due account for the number of points participating in the calculation (i.e., lying in the SNSL) within the moving window. The integral map of ASD values has been compared with four traditional soil maps on the studied territory. It is shown that this integral map can be interpreted in terms of soil taxa: the areas of seven soil subtypes (soddy moderately podzolic, soddy slightly podzolic, light gray forest. gray forest, dark gray forest, podzolized chernozems, and leached chernozems) belonging to three soil types (soddy-podzolic, gray forest, and chernozemic soils) can be delineated on it.

  18. A Comparison of Association Methods for Cytotoxicity Mapping in Pharmacogenomics

    PubMed Central

    Brown, Chad; Havener, Tammy M.; Everitt, Lorraine; McLeod, Howard; Motsinger-Reif, Alison A.

    2011-01-01

    Cytotoxicity assays of immortalized lymphoblastoid cell lines (LCLs) represent a promising new in vitro approach in pharmacogenomics research. However, previous studies employing LCLs in gene mapping have used simple association methods, which may not adequately capture the true differences in non-linear response profiles between genotypes. Two common approaches summarize each dose-response curve with either the IC50 or the slope parameter estimates from a hill slope fit and treat these estimates as the response in a linear model. The current study investigates these two methods, as well as four novel methods, and compares their power to detect differences between the response profiles of genotypes under a variety of different alternatives. The four novel methods include two methods that summarize each dose-response by its area under the curve, one method based off of an analysis of variance (ANOVA) design, and one method that compares hill slope fits for all individuals of each genotype. The power of each method was found to depend not only on the choice of alternative, but also on the choice for the set of dosages used in cytotoxicity measurements. The ANOVA-based method was found to be the most robust across alternatives and dosage sets for power in detecting differences between genotypes. PMID:22303380

  19. Comparison of some isoparametric mappings for curved triangular spectral elements

    NASA Astrophysics Data System (ADS)

    Pasquetti, Richard

    2016-07-01

    Using the spectral element method (SEM), or more generally hp-finite elements (hp-FEM), it is possible to solve with high accuracy various kinds of problems governed by partial differential equations (PDEs), see e.g. [1,2]. However, as soon as the physical domain is not polygonal, the accuracy quickly deteriorates if curved elements are not implemented. This is the reason why various methods have been developed during the last decades, starting from the celebrated transfinite interpolation proposed for quadrangular elements in [3]. In this note we revisit this problem for triangular elements, based on the use of Fekete points for interpolations and of Gauss points for quadratures, i.e. when using the so-called Fekete-Gauss approximation. As detailed in [4], such an approach shows the so-called spectral accuracy. However, differently to the quadrangles based SEM, it does not involve diagonal mass matrices, see e.g. [5-7] and references herein for works trying to preserve this nice property that is especially useful when addressing evolution problems with an explicit time marching. In the frame of the Fekete-Gauss TSEM (T, for triangle), the present study clearly points out the importance of a good choice of the bending procedure by comparing different isoparametric mappings for the Poisson and Grad-Shafranov PDEs.

  20. Quantitative comparison of genome-wide DNA methylation mapping technologies.

    PubMed

    Bock, Christoph; Tomazou, Eleni M; Brinkman, Arie B; Müller, Fabian; Simmer, Femke; Gu, Hongcang; Jäger, Natalie; Gnirke, Andreas; Stunnenberg, Hendrik G; Meissner, Alexander

    2010-10-01

    DNA methylation plays a key role in regulating eukaryotic gene expression. Although mitotically heritable and stable over time, patterns of DNA methylation frequently change in response to cell differentiation, disease and environmental influences. Several methods have been developed to map DNA methylation on a genomic scale. Here, we benchmark four of these approaches by analyzing two human embryonic stem cell lines derived from genetically unrelated embryos and a matched pair of colon tumor and adjacent normal colon tissue obtained from the same donor. Our analysis reveals that methylated DNA immunoprecipitation sequencing (MeDIP-seq), methylated DNA capture by affinity purification (MethylCap-seq), reduced representation bisulfite sequencing (RRBS) and the Infinium HumanMethylation27 assay all produce accurate DNA methylation data. However, these methods differ in their ability to detect differentially methylated regions between pairs of samples. We highlight strengths and weaknesses of the four methods and give practical recommendations for the design of epigenomic case-control studies. PMID:20852634

  1. Generative Topographic Mapping (GTM): Universal Tool for Data Visualization, Structure-Activity Modeling and Dataset Comparison.

    PubMed

    Kireeva, N; Baskin, I I; Gaspar, H A; Horvath, D; Marcou, G; Varnek, A

    2012-04-01

    Here, the utility of Generative Topographic Maps (GTM) for data visualization, structure-activity modeling and database comparison is evaluated, on hand of subsets of the Database of Useful Decoys (DUD). Unlike other popular dimensionality reduction approaches like Principal Component Analysis, Sammon Mapping or Self-Organizing Maps, the great advantage of GTMs is providing data probability distribution functions (PDF), both in the high-dimensional space defined by molecular descriptors and in 2D latent space. PDFs for the molecules of different activity classes were successfully used to build classification models in the framework of the Bayesian approach. Because PDFs are represented by a mixture of Gaussian functions, the Bhattacharyya kernel has been proposed as a measure of the overlap of datasets, which leads to an elegant method of global comparison of chemical libraries. PMID:27477099

  2. ERP evidence for conceptual mappings and comparison processes during the comprehension of conventional and novel metaphors.

    PubMed

    Lai, Vicky Tzuyin; Curran, Tim

    2013-12-01

    Cognitive linguists suggest that understanding metaphors requires activation of conceptual mappings between the involved concepts. We tested whether mappings are indeed in use during metaphor comprehension, and what mapping means as a cognitive process with Event-Related Potentials. Participants read literal, conventional metaphorical, novel metaphorical, and anomalous target sentences preceded by primes with related or unrelated mappings. Experiment 1 used sentence-primes to activate related mappings, and Experiment 2 used simile-primes to induce comparison thinking. In the unprimed conditions of both experiments, metaphors elicited N400s more negative than the literals. In Experiment 1, related sentence-primes reduced the metaphor-literal N400 difference in conventional, but not in novel metaphors. In Experiment 2, related simile-primes reduced the metaphor-literal N400 difference in novel, but not clearly in conventional metaphors. We suggest that mapping as a process occurs in metaphors, and the ways in which it can be facilitated by comparison differ between conventional and novel metaphors. PMID:24182839

  3. Plantaricin LD1: a bacteriocin produced by food isolate of Lactobacillus plantarum LD1.

    PubMed

    Gupta, Aabha; Tiwari, Santosh Kumar

    2014-04-01

    Plantaricin LD1, a bacteriocin produced by Lactobacillus plantarum LD1, was characterized for biochemical and antimicrobial properties. Bacteriocin showed stability at high temperatures (100 °C for 20 min and 121 °C for 15 min under 15 psi pressure), in a pH range of 2.0-8.0 and also in the presence of organic solvents, surfactants and detergents. The crude preparation was not affected by catalase, amylase and lipase but activity was reduced in the presence of pepsin, trypsin and proteinase K showing proteinaceous nature of the compound. The molecular weight of bacteriocin was found to be ∼6.5 kDa, and antimicrobial activity was confirmed by bioassay. It inhibited not only related strains but also other Gram-positive and Gram-negative bacteria such as Lactobacillus curvatus NRRL B-4562, Lactococcus lactis subsp. lactis NRRL B-1821, Enterococcus faecium NRRL B-2354, Enterobacter cloacae NRRL B-14298, Micrococcus luteus, Staphylococcus aureus, urogenic Escherichia coli, Pseudomonas aeruginosa, Salmonella typhi, Shigella flexneri and Vibrio sp. These properties of plantaricin LD1 suggest its applications not only in food safety but in therapeutics as well. PMID:24522411

  4. Space Borne Swath Mapping Laser Altimeters - Comparison of Measurement Approaches

    NASA Astrophysics Data System (ADS)

    Sun, X.; Abshire, J. B.; Harding, D. J.

    2007-12-01

    Laser altimetry is an important technique for studying the surface topography of the planets and the Earth from orbit. Presently orbital laser altimeters profile surface height along a single ground track, such as the Geoscience Laser Altimeter System (GLAS) on Ice, Cloud, and land Elevation Satellite (ICESat). NASA is developing new technologies for an orbiting swath mapping laser altimeter with faster pulse rate and smaller footprint size to provide an instantaneous 3-dimentional measurement of the of icesheets, land topography and vegetation structure. The goal is to provide a greater than 200 m wide swath with 5 to 10 m diameter laser footprint from a 400 km altitude orbit. To achieve these goals, we have to use more efficient laser transmitters and more sensitive detectors to allow simultaneous multi-channel measurement with a reasonable instrument size and electrical power requirement. The measurement efficiency in terms of electrical energy needed per laser ranging measurement needs to be improved by more than an order of magnitude. Several different approaches were considered, including the use of fiber lasers, shorter laser pulse widths, lower noise analog detectors and photon counting detectors. The receiver sensitivity was further improved by averaging the results from a number of laser pulse measurements. Different laser pulse modulation formats, such as the pseudo random noise code modulation used in the Global Position System (GPS), were investigated to give more flexibility in laser selection and to further improve the ranging performance. We have analyzed and compared measurement performance for several different approaches using the receiver models that was validated with GLAS in orbit measurement data. We compared measurement performance with the traditional high-power low-pulse-rate laser transmitters to those with low-energy high-pulse-rate laser transmitters. For this work we considered laser characteristics representative of Microchip lasers

  5. Coastal and submarine features on MSS imagery of Southeastern Massachusetts: Comparison with conventional maps

    NASA Technical Reports Server (NTRS)

    Williams, R. S., Jr.

    1973-01-01

    Three ERTS-1, MSS images of southeastern Massachusetts, including Cape Cod Bay, Cape Cod, and Nantucket Sound, show a variety of dynamic geologic and hydrologic phenomena. Coastal features imaged include the coastline at different time in the tidal cycle, harbors, lakes and ponds, marshes (wetlands), and beach and dune areas; submarine features include tidal flats, shoals, dredged and natural channels, and bars. Comparison with conventional maps at 1:1,000,000 and 1:250,000 scales show many inaccuracies between the ERTS imagery and the two map scales. The ERTS-1 imagery can be used to increase the accuracy of these maps, portray additional environmental information, and provide the capability for frequent updating of maps at such scales. ERTS-1 imagery provides a very cost effective method for provision of certain types of environmental data for Cape Cod and environs.

  6. Integration Options For The OSI LD1200

    NASA Astrophysics Data System (ADS)

    Edwards, Louis G.

    1987-01-01

    Optical drives have unique characteristics that lend themselves to applications that previously were difficult or impossible to satisfy. Obvious examples are: a. Removable storage of huge volumes of data - Transportability - Jukebox use - Security b. Write once - Audit trails that cannot be erased c. Long lasting archives - Do not need to be rewritten every few years - Not vulnerable to magnetic fields - Randomly accessible This paper identifies some features and algorithms that provide high efficiency in achieving the benefits listed above. These features are used in some of the subsystems in which the OSI LD1200 is integrated. Gaining the benefits of optical disks by integrating them into an existing computer system was hampered because existing software drivers were designed for magnetic disk drives. Existing drivers assume the ability to update a file--including the directory--by rewriting in the same sector. The requirement for new and/or modified host adapters and software drivers has provided opportunities for existing adapter houses as well as for new entrepreneurs. This has led to subsystems in which different characteristics of optical drives are emphasized and has resulted in a wide variety of capabilities available for use in applications.

  7. Comparison of universal kriging and regression tree modelling for soil property mapping

    NASA Astrophysics Data System (ADS)

    Kempen, Bas

    2013-04-01

    Geostatistical modelling approaches have been dominating the field of digital soil mapping (DSM) since its inception in the early 1980s. In recent years, however, machine learning methods such as classification and regression trees, random forests, and neural networks have quickly gained popularity among researchers in the DSM community. The increased use of these methods has largely gone at the cost of geostatistical approaches. Despite the apparent shift in the application of DSM methods from geostatistics to machine learning, quantitative comparisons of the prediction performance of these methods are largely lacking. The aims of this research, therefore, are: i) to map two soil properties (topsoil organic matter content and thickness of the peat layer in the soil profile) using regression tree (RT) modelling and universal kriging (UK), and ii) to compare the prediction performance of these methods with independent data obtained by probability sampling. Using such data for validation does not only yield a statistically valid and unbiased estimates of the map accuracy, but it also allows a statistical comparison of the accuracies of the maps generated by the two methods. The topsoil organic matter content and the thickness of the peat layer were mapped for a 14,000 ha area in the province of Drenthe, The Netherlands. The calibration dataset contained soil property observations at 1,715 sites. The covariates used include layers derived from soil and paleogeography maps, land cover, relative elevation, drainage class, land reclamation period, elevation change, and historic land use. The validation dataset contained 125 observations selected by stratified simple random sampling of the study area. The root mean squared error (RMSE) of the soil organic matter map obtained by RT modelling was 0.603 log(%), that of the map obtained by UK 0.595 log(%). The difference in map accuracy was not significant (p = 0.377). The RMSE of the peat thickness map obtained by RT

  8. Mapping biomass with remote sensing: a comparison of methods for the case study of Uganda

    PubMed Central

    2011-01-01

    Background Assessing biomass is gaining increasing interest mainly for bioenergy, climate change research and mitigation activities, such as reducing emissions from deforestation and forest degradation and the role of conservation, sustainable management of forests and enhancement of forest carbon stocks in developing countries (REDD+). In response to these needs, a number of biomass/carbon maps have been recently produced using different approaches but the lack of comparable reference data limits their proper validation. The objectives of this study are to compare the available maps for Uganda and to understand the sources of variability in the estimation. Uganda was chosen as a case-study because it presents a reliable national biomass reference dataset. Results The comparison of the biomass/carbon maps show strong disagreement between the products, with estimates of total aboveground biomass of Uganda ranging from 343 to 2201 Tg and different spatial distribution patterns. Compared to the reference map based on country-specific field data and a national Land Cover (LC) dataset (estimating 468 Tg), maps based on biome-average biomass values, such as the Intergovernmental Panel on Climate Change (IPCC) default values, and global LC datasets tend to strongly overestimate biomass availability of Uganda (ranging from 578 to 2201 Tg), while maps based on satellite data and regression models provide conservative estimates (ranging from 343 to 443 Tg). The comparison of the maps predictions with field data, upscaled to map resolution using LC data, is in accordance with the above findings. This study also demonstrates that the biomass estimates are primarily driven by the biomass reference data while the type of spatial maps used for their stratification has a smaller, but not negligible, impact. The differences in format, resolution and biomass definition used by the maps, as well as the fact that some datasets are not independent from the reference data to which they

  9. [Acute toxicity testing (LD50) of Chinese mineral drugs].

    PubMed

    Yue, W; Liu, W H; Wang, L F; Fu, S X; Li, Y S; Kong, Z K; Tang, Z X; Chen, Z L

    1989-02-01

    Acute toxicity and LD50 of 62 mineral drugs were determined by ig, ip or iv in mice, in order to provide some guidelines for safety in clinical use, as well as for pharmacological and toxicological studies. In the present investigation, the difference in the acute toxicity and LD50 between raw drugs and medicines prepared by roasting is explained. PMID:2506896

  10. Social Information Processing and Emotional Understanding in Children with LD

    ERIC Educational Resources Information Center

    Bauminger, Nirit; Edelsztein, Hany Schorr; Morash, Janice

    2005-01-01

    The present study aimed to comprehensively examine social cognition processes in children with and without learning disabilities (LD), focusing on social information processing (SIP) and complex emotional understanding capabilities such as understanding complex, mixed, and hidden emotions. Participants were 50 children with LD (age range 9.4-12.7;…

  11. Common Core State Standards, Writing, and Students with LD: Recommendations

    ERIC Educational Resources Information Center

    Graham, Steve; Harris, Karen R.

    2013-01-01

    This article examines the Common Core State Standards as they apply to writing and students with learning disabilities (LD). We first consider why the implementation of these standards is advantageous to writing instruction for students with LD as well as the challenges in implementing them. Next, we make the following four recommendations in…

  12. Explanatory Style and College Students with ADHD and LD

    ERIC Educational Resources Information Center

    Shmulsky, Solvegi; Gobbo, Ken

    2007-01-01

    Objective: This study uses the Attribution Style Questionnaire (ASQ) to measure the causal thinking of 42 college students with diagnosed language-based learning disabilities (LD), ADHD, or co-occurring ADHD and LD. Attribution style, or explanatory style, is a term used to describe the tendencies of individuals to think that the causes of…

  13. 7 CFR 1737.32 - Loan Design (LD).

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Studies-Area Coverage Survey and Loan Design § 1737.32 Loan Design (LD). (a) A loan application requires... plan, see 7 CFR part 1751, subpart B). (b) Because of the importance and complexity of the engineering... to perform both services. See 7 CFR 1753.17. (c) An LD for initial loans or for any exchange...

  14. One method to uniformize LD Gaussian beam

    NASA Astrophysics Data System (ADS)

    Liu, Xu

    2001-10-01

    The uniformization of Gaussian beam intensity is necessary in many applications. In active night-vision, monitoring targets especially requires this. IR semiconductor laser is widely used in the area because of its low power-consumption and small size. But the effects of the product are restrained due to system output Gaussian beam of ununiform intensity. The essay discusses a former system design and then gives an improved experimental scheme with some exciting results. The previous structure was as follows. High power SQW-LD beam was coupled to a plastic optical fiber (POF) directly, and then output through a lens. With its angle varied, targets ranged from 60 to 100 meters can be monitored. But unfortunately there were interference speckles folded on the target. An experimental system based on the thoughts of fiber transmission and complex filter was designed to improve the distribution of Gaussian beam intensity, with the result that the relatively well-distributed beam was got. Laser wavefront propagated through a very small pinhole whose diameter was 20 micrometers or so. The pinhole acted as an amplitude filter. Then the beam was coupled directly into a multi-mode quartz fiber whose core/cladding layer diameter parameter was 50/125micrometers . It conveyed laser beam about 200 mm. At the end of the fiber, several phase plates stood. Laser beam transmitted through the fiber was then phase-filtered and at last beam-expanded by a lens to illuminate the target. The more plates you used, the more uniform the illuminated picture was on condition the beam intensity was so strong that the CCD device could respond to.

  15. Comparison of three methods for materials identification and mapping with imaging spectroscopy

    NASA Technical Reports Server (NTRS)

    Clark, Roger N.; Swayze, Gregg; Boardman, Joe; Kruse, Fred

    1993-01-01

    We are comparing three methods of mapping analysis tools for imaging spectroscopy data. The purpose of this comparison is to understand the advantages and disadvantages of each algorithm so others would be better able to choose the best algorithm or combinations of algorithms for a particular problem. The three algorithms are: (1) the spectralfeature modified least squares mapping algorithm of Clark et al (1990, 1991): programs mbandmap and tricorder; (2) the Spectral Angle Mapper Algorithm(Boardman, 1993) found in the CU CSES SIPS package; and (3) the Expert System of Kruse et al. (1993). The comparison uses a ground-calibrated 1990 AVIRIS scene of 400 by 410 pixels over Cuprite, Nevada. Along with the test data set is a spectral library of 38 minerals. Each algorithm is tested with the same AVIRIS data set and spectral library. Field work has confirmed the presence of many of these minerals in the AVIRIS scene (Swayze et al. 1992).

  16. Comparison of event-based landslide inventory maps obtained interpreting satellite images and aerial photographs

    NASA Astrophysics Data System (ADS)

    Fiorucci, Federica; Cardinali, Mauro; Carlà Roberto; Mondini, Alessandro; Santurri, Leonardo; Guzzetti, Fausto

    2010-05-01

    high-resolution satellite. The comparison was executed considering: (i) descriptive landslide statistics, (ii) cartographic matching or mismatching, to quantify positional and dimensional errors (over-estimated or under-estimated landslide size), and (iii) differences in the frequency-area statistics, that quantify the number of landslides in different size classes. We discuss the results obtained in view of their importance for the production of landslide inventory maps. We emphasize advantages and limitations of the different information used, and of the adopted approaches and techniques.

  17. Comparison between the recent U.S. composite magnetic anomaly map and Magsat anomaly data

    NASA Technical Reports Server (NTRS)

    Schnetzler, C. C.; Taylor, P. T.; Langel, R. A.; Hinze, W. J.; Phillips, J. D.

    1985-01-01

    The present investigation is concerned with a comparison of Magsat data with a Composite Magnetic Anomaly Map (CMAM) of the conterminous U.S. reported by Zietz (1982). The investigation was initiated to test the validity of the satellite measurements, and to provide insights into error or problems in either data set. It is found that upward continuation of the digital CMAM data is not in qualitative agreement with the Magsat map. However, if a least squares fit polynomial surface is taken out prior to upward continuation, there is improved quantitative agreement between a residual CMAM and Magsat. Causes for the remaining differences between the residual, upward continued CMAM and the Magsat map are also considered.

  18. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.

    PubMed

    Kunde-Ramamoorthy, Govindarajan; Coarfa, Cristian; Laritsky, Eleonora; Kessler, Noah J; Harris, R Alan; Xu, Mingchu; Chen, Rui; Shen, Lanlan; Milosavljevic, Aleksandar; Waterland, Robert A

    2014-04-01

    Coupling bisulfite conversion with next-generation sequencing (Bisulfite-seq) enables genome-wide measurement of DNA methylation, but poses unique challenges for mapping. However, despite a proliferation of Bisulfite-seq mapping tools, no systematic comparison of their genomic coverage and quantitative accuracy has been reported. We sequenced bisulfite-converted DNA from two tissues from each of two healthy human adults and systematically compared five widely used Bisulfite-seq mapping algorithms: Bismark, BSMAP, Pash, BatMeth and BS Seeker. We evaluated their computational speed and genomic coverage and verified their percentage methylation estimates. With the exception of BatMeth, all mappers covered >70% of CpG sites genome-wide and yielded highly concordant estimates of percentage methylation (r(2) ≥ 0.95). Fourfold variation in mapping time was found between BSMAP (fastest) and Pash (slowest). In each library, 8-12% of genomic regions covered by Bismark and Pash were not covered by BSMAP. An experiment using simulated reads confirmed that Pash has an exceptional ability to uniquely map reads in genomic regions of structural variation. Independent verification by bisulfite pyrosequencing generally confirmed the percentage methylation estimates by the mappers. Of these algorithms, Bismark provides an attractive combination of processing speed, genomic coverage and quantitative accuracy, whereas Pash offers considerably higher genomic coverage. PMID:24391148

  19. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing

    PubMed Central

    Kunde-Ramamoorthy, Govindarajan; Coarfa, Cristian; Laritsky, Eleonora; Kessler, Noah J.; Harris, R. Alan; Xu, Mingchu; Chen, Rui; Shen, Lanlan; Milosavljevic, Aleksandar; Waterland, Robert A.

    2014-01-01

    Coupling bisulfite conversion with next-generation sequencing (Bisulfite-seq) enables genome-wide measurement of DNA methylation, but poses unique challenges for mapping. However, despite a proliferation of Bisulfite-seq mapping tools, no systematic comparison of their genomic coverage and quantitative accuracy has been reported. We sequenced bisulfite-converted DNA from two tissues from each of two healthy human adults and systematically compared five widely used Bisulfite-seq mapping algorithms: Bismark, BSMAP, Pash, BatMeth and BS Seeker. We evaluated their computational speed and genomic coverage and verified their percentage methylation estimates. With the exception of BatMeth, all mappers covered >70% of CpG sites genome-wide and yielded highly concordant estimates of percentage methylation (r2 ≥ 0.95). Fourfold variation in mapping time was found between BSMAP (fastest) and Pash (slowest). In each library, 8–12% of genomic regions covered by Bismark and Pash were not covered by BSMAP. An experiment using simulated reads confirmed that Pash has an exceptional ability to uniquely map reads in genomic regions of structural variation. Independent verification by bisulfite pyrosequencing generally confirmed the percentage methylation estimates by the mappers. Of these algorithms, Bismark provides an attractive combination of processing speed, genomic coverage and quantitative accuracy, whereas Pash offers considerably higher genomic coverage. PMID:24391148

  20. A Comparison of Spatial Analysis Methods for the Construction of Topographic Maps of Retinal Cell Density

    PubMed Central

    Garza-Gisholt, Eduardo; Hemmi, Jan M.; Hart, Nathan S.; Collin, Shaun P.

    2014-01-01

    Topographic maps that illustrate variations in the density of different neuronal sub-types across the retina are valuable tools for understanding the adaptive significance of retinal specialisations in different species of vertebrates. To date, such maps have been created from raw count data that have been subjected to only limited analysis (linear interpolation) and, in many cases, have been presented as iso-density contour maps with contour lines that have been smoothed ‘by eye’. With the use of stereological approach to count neuronal distribution, a more rigorous approach to analysing the count data is warranted and potentially provides a more accurate representation of the neuron distribution pattern. Moreover, a formal spatial analysis of retinal topography permits a more robust comparison of topographic maps within and between species. In this paper, we present a new R-script for analysing the topography of retinal neurons and compare methods of interpolating and smoothing count data for the construction of topographic maps. We compare four methods for spatial analysis of cell count data: Akima interpolation, thin plate spline interpolation, thin plate spline smoothing and Gaussian kernel smoothing. The use of interpolation ‘respects’ the observed data and simply calculates the intermediate values required to create iso-density contour maps. Interpolation preserves more of the data but, consequently includes outliers, sampling errors and/or other experimental artefacts. In contrast, smoothing the data reduces the ‘noise’ caused by artefacts and permits a clearer representation of the dominant, ‘real’ distribution. This is particularly useful where cell density gradients are shallow and small variations in local density may dramatically influence the perceived spatial pattern of neuronal topography. The thin plate spline and the Gaussian kernel methods both produce similar retinal topography maps but the smoothing parameters used may affect

  1. Description and comparison of geologic maps with FRAGSTATS - A spatial statistics program

    USGS Publications Warehouse

    Raines, G.L.

    2002-01-01

    FRAGSTATS is a public-domain GIS implementation of a set of spatial statistics that address a fundamental problem in GIS applications, description and comparison of maps. The spatial statistics from the 1:2,500,000-scale United States geologic map of Nevada, the central United States, and the northeastern United States quantify the differences in complexity and variability between these three geologic terranes. Nevada is defined by a large number of patches of small size and low size variability, whereas the Central area has a small number of patches with smaller relative size variability. All three areas have similar map-unit shape complexity with Nevada having the lowest. Based on the density of edges, the areas can be ranked from highest to lowest, as Nevada, Central, and Northeast. The Shannon diversity index ranks the areas from highest to lowest, as Northeast, Nevada, and Central, but the Shannon evenness index ranks them from highest to lowest, as Northeast, Central, and Nevada. These rankings may reflect the influence of folding in the Northeast and Central areas as opposed to basin and range extension in Nevada. The core areas statistic ranks the areas for spatial accuracy from highest to lowest, as Central, Northeast, and Nevada, with Northeast and Nevada being similar. For a scale comparison, the FRAGSTATS statistics quantify the increased complexity and spatial accuracy that is inherent in going from small- to larger-scale maps. For example for 1:2,500,000-1:500,000-scale maps of Nevada, respectively, the area weighted fractal dimension increase from 1.1 to 1.18, and the total core areas index almost doubles from 39.09 to 63.38. In addition, the fractal dimensions discriminate gross lithology and tectonic terranes. ?? 2002 Elsevier Science Ltd. All rights reserved.

  2. Mapping.

    ERIC Educational Resources Information Center

    Kinney, Douglas M.; McIntosh, Willard L.

    1979-01-01

    The area of geological mapping in the United States in 1978 increased greatly over that reported in 1977; state geological maps were added for California, Idaho, Nevada, and Alaska last year. (Author/BB)

  3. Validating Flood Mapping Products Using a Digital Elevation Model Comparison Technique

    NASA Astrophysics Data System (ADS)

    Fayne, J.

    2014-12-01

    This preliminary study assessed the validity of a pixel analysis elevation comparison technique and determined necessary steps for improvement. The pixel analysis sought to assess the probability of a flood occurring in a particular area by comparing the spatial extent of flood mapping products to the local elevation. The method was developed to determine if the physical relationship between elevation and floods as shown in satellite images is accurately represented in a flood mapping product. The data incorporated in this study are raster digital elevation model (DEM) tiles, a scene from Landsat 5 during a flood period, and a scene from the NASA DEVELOP Flood Disasters Team Flood Product. Pixels representing flooded areas were compared to the elevation height pixels using horizontal transect lines to create pixel value profiles across a 727 km transect of Vietnam and Cambodia. The elevation model comparison validates the Flood Product by depicting water presence in alignment with areas of low elevation. Initial findings indicate that the technique can be used to improve the assessment of flood mapping products in transects less than 10 km. Future research will focus on streamlining the pixel analysis process to yield comprehensive results for larger areas.

  4. a Comparison of Sub-Pixel Mapping Methods for Coastal Areas

    NASA Astrophysics Data System (ADS)

    Liu, Qingxiang; Trinder, John; Turner, Ian

    2016-06-01

    This paper presents the comparisons of three soft classification methods and three sub-pixel mapping methods for the classification of coastal areas at sub-pixel level. Specifically, SPOT-7 multispectral images covering the coastal area of Perth are selected as the experiment dataset. For the soft classification, linear spectral unmixing model, supervised fully-fuzzy classification method and the support vector machine are applied to generate the fraction map. Then for the sub-pixel mapping, the sub-pixel/pixel attraction model, pixel swapping and wavelets method are compared. Besides, the influence of the correct fraction constraint is explored. Moreover, a post-processing step is implemented according to the known spatial knowledge of coastal areas. The accuracy assessment of the fraction values indicates that support vector machine generates the most accurate fraction result. For sub-pixel mapping, wavelets method outperforms the other two methods with overall classification accuracy of 91.79% and Kappa coefficient of 0.875 after the post-processing step and it also performs best for waterline extraction with mean distance of 0.71m to the reference waterline. In this experiment, the use of correct fraction constraint decreases the classification accuracy of sub-pixel mapping methods and waterline extraction. Finally, the post-processing step improves the accuracy of sub-pixel mapping methods, especially for those with correct coefficient constraint. The most significant improvement of overall accuracy is as much as 4% for the sub-pixel/pixel attraction model with correct coefficient constraint.

  5. High resolution sub-millimetre mapping of starburst galaxies: Comparison with CO emission

    NASA Technical Reports Server (NTRS)

    Smith, P. A.; Brand, P. W. J. L.; Puxley, Phil J.; Mountain, C. M.; Nakai, Naomasa

    1990-01-01

    Researchers present first results from a program of submillimeter continuum mapping of starburst galaxies, and comparison of their dust and CO emission. This project was prompted by surprising results from the first target, the nearby starburst M82, which shows in the dust continuum a morphology quite unlike that of its CO emission, in contrast to what might be expected if both CO and dust are accurately tracing the molecular hydrogen. Possible explanations for this striking difference are discussed. In the light of these results, the program has been extended to include sub-mm mapping of the nearby, vigorously star forming spirals, M83 and Maffei 2. The latter were also observed extensively in CO, in order to study excitation conditions in its central regions. The James Clerk Maxwell Telescope was used in these studies.

  6. Comparison of CT-derived Ventilation Maps with Deposition Patterns of Inhaled Microspheres in Rats

    SciTech Connect

    Jacob, Rick E.; Lamm, W. J.; Einstein, Daniel R.; Krueger, Melissa; Glenny, Robb W.; Corley, Richard A.

    2015-04-01

    Purpose: Computer models for inhalation toxicology and drug-aerosol delivery studies rely on ventilation pattern inputs for predictions of particle deposition and vapor uptake. However, changes in lung mechanics due to disease can impact airflow dynamics and model results. It has been demonstrated that non-invasive, in vivo, 4DCT imaging (3D imaging at multiple time points in the breathing cycle) can be used to map heterogeneities in ventilation patterns under healthy and disease conditions. The purpose of this study was to validate ventilation patterns measured from CT imaging by exposing the same rats to an aerosol of fluorescent microspheres (FMS) and examining particle deposition patterns using cryomicrotome imaging. Materials and Methods: Six male Sprague-Dawley rats were intratracheally instilled with elastase to a single lobe to induce a heterogeneous disease. After four weeks, rats were imaged over the breathing cycle by CT then immediately exposed to an aerosol of ~1µm FMS for ~5 minutes. After the exposure, the lungs were excised and prepared for cryomicrotome imaging, where a 3D image of FMS deposition was acquired using serial sectioning. Cryomicrotome images were spatially registered to match the live CT images to facilitate direct quantitative comparisons of FMS signal intensity with the CT-based ventilation maps. Results: Comparisons of fractional ventilation in contiguous, non-overlapping, 3D regions between CT-based ventilation maps and FMS images showed strong correlations in fractional ventilation (r=0.888, p<0.0001). Conclusion: We conclude that ventilation maps derived from CT imaging are predictive of the 1µm aerosol deposition used in ventilation-perfusion heterogeneity inhalation studies.

  7. Comparison of brass alloys composition by laser-induced breakdown spectroscopy and self-organizing maps

    NASA Astrophysics Data System (ADS)

    Pagnotta, Stefano; Grifoni, Emanuela; Legnaioli, Stefano; Lezzerini, Marco; Lorenzetti, Giulia; Palleschi, Vincenzo

    2015-01-01

    In this paper we face the problem of assessing similarities in the composition of different metallic alloys, using the laser-induced breakdown spectroscopy technique. The possibility of determining the degree of similarity through the use of artificial neural networks and self-organizing maps is discussed. As an example, we present a case study involving the comparison of two historical brass samples, very similar in their composition. The results of the paper can be extended to many other situations, not necessarily associated with cultural heritage and archeological studies, where objects with similar composition have to be compared.

  8. Comparison of Signals from Gravitational Wave Detectors with Instantaneous Time-Frequency Maps

    NASA Technical Reports Server (NTRS)

    Stroeer, A.; Blackburn, L.; Camp, J.

    2011-01-01

    Gravitational wave astronomy relies on the use of multiple detectors, so that coincident detections may distinguish real signals from instrumental artifacts, and also so that relative timing of signals can provide the sky position of sources. We show that the comparison of instantaneous time-frequency and time-amplitude maps provided by the Hilbert-Huang Transform (HHT) can be used effectively for relative signal timing of common signals, to discriminate between the case of identical coincident signals and random noise coincidences and to provide a classification of signals based on their time-frequency trajectories. The comparison is done with a X(sup 2) goodness-offit method which includes contributions from both the instantaneous amplitude and frequency components of the HHT to match two signals in the time domain. This approach naturally allows the analysis of waveforms with strong frequency modulation.

  9. Geological Mapping of Fortuna Tessera (V-2): Venus and Earth's Archean Process Comparisons

    NASA Technical Reports Server (NTRS)

    Head, James W.; Hurwitz,D. M.; Ivanov, M. A.; Basilevsky, A. T.; Kumar, P. Senthil

    2008-01-01

    The geological features, structures, thermal conditions, interpreted processes, and outstanding questions related to both the Earth's Archean and Venus share many similarities and we are using a problem-oriented approach to Venus mapping, guided by insight from the Archean record of the Earth, to gain new insight into the evolution of Venus and Earth's Archean. The Earth's preserved and well-documented Archean record provides important insight into high heat-flux tectonic and magmatic environments and structures and the surface of Venus reveals the current configuration and recent geological record of analogous high-temperature environments unmodified by subsequent several billion years of segmentation and overprinting, as on Earth. Elsewhere we have addressed the nature of the Earth's Archean, the similarities to and differences from Venus, and the specific Venus and Earth-Archean problems on which progress might be made through comparison. Here we present the major goals of the Venus-Archean comparison and show how preliminary mapping of the geology of the V-2 Fortuna Tessera quadrangle is providing insight on these problems. We have identified five key themes and questions common to both the Archean and Venus, the assessment of which could provide important new insights into the history and processes of both planets.

  10. Lo/Ld phase coexistence modulation induced by GM1.

    PubMed

    Puff, Nicolas; Watanabe, Chiho; Seigneuret, Michel; Angelova, Miglena I; Staneva, Galya

    2014-08-01

    Lipid rafts are assumed to undergo biologically important size-modulations from nanorafts to microrafts. Due to the complexity of cellular membranes, model systems become important tools, especially for the investigation of the factors affecting "raft-like" Lo domain size and the search for Lo nanodomains as precursors in Lo microdomain formation. Because lipid compositional change is the primary mechanism by which a cell can alter membrane phase behavior, we studied the effect of the ganglioside GM1 concentration on the Lo/Ld lateral phase separation in PC/SM/Chol/GM1 bilayers. GM1 above 1mol % abolishes the formation of the micrometer-scale Lo domains observed in GUVs. However, the apparently homogeneous phase observed in optical microscopy corresponds in fact, within a certain temperature range, to a Lo/Ld lateral phase separation taking place below the optical resolution. This nanoscale phase separation is revealed by fluorescence spectroscopy, including C12NBD-PC self-quenching and Laurdan GP measurements, and is supported by Gaussian spectral decomposition analysis. The temperature of formation of nanoscale Lo phase domains over an Ld phase is determined, and is shifted to higher values when the GM1 content increases. A "morphological" phase diagram could be made, and it displays three regions corresponding respectively to Lo/Ld micrometric phase separation, Lo/Ld nanometric phase separation, and a homogeneous Ld phase. We therefore show that a lipid only-based mechanism is able to control the existence and the sizes of phase-separated membrane domains. GM1 could act on the line tension, "arresting" domain growth and thereby stabilizing Lo nanodomains. PMID:24835016

  11. Comparison of the Reliability and Validity of Scores from Two Concept-Mapping Techniques.

    ERIC Educational Resources Information Center

    Ruiz-Primo, Maria Araceli; Schultz, Susan E.; Li, Min; Shavelson, Richard J.

    2001-01-01

    Reports the results of a study that compared two concept-mapping techniques, one high-directed, "fill-in-the-map" and one low-directed, "construct-a-map-from-scratch". Examines whether: (1) skeleton map scores were sensitive to the sample; (2) the two types of skeleton maps were equivalent; and (3) the two mapping techniques provided similar…

  12. Accuracy of Class.LD2: An Expert System for Classifying Learning Disabled Students.

    ERIC Educational Resources Information Center

    Martindale, Elizabeth S.; And Others

    The study evaluated the accuracy of Class.LD2, a computerized expert system for classifying learning disabled (LD) students. Of 264 student files, 78 files were chosen based on disagreement between multidisciplinary team and Class.LD2 decisions regarding eligibility for LD placement. These 78 cases were evaluated by three individuals expert in LD…

  13. A study of an orbital radar mapping mission to Venus. Volume 2: Configuration comparisons and systems evaluation

    NASA Technical Reports Server (NTRS)

    1973-01-01

    Configuration comparisons and systems evaluation for the orbital radar mapping mission of the planet Venus are discussed. Designs are recommended which best satisfy the science objectives of the Venus radar mapping concept. Attention is given to the interaction and integration of those specific mission-systems recommendations with one another, and the final proposed designs are presented. The feasibility, cost, and scheduling of these configurations are evaluated against assumptions of reasonable state-of-the-art growth and space funding expectations.

  14. A study of an orbital radar mapping mission to Venus. Volume 3: Parametric studies and subsystem comparisons

    NASA Technical Reports Server (NTRS)

    1973-01-01

    Parametric studies and subsystem comparisons for the orbital radar mapping mission to planet Venus are presented. Launch vehicle requirements and primary orbiter propulsion system requirements are evaluated. The systems parametric analysis indicated that orbit size and orientation interrelated with almost all of the principal spacecraft systems and influenced significantly the definition of orbit insertion propulsion requirements, weight in orbit capability, radar system design, and mapping strategy.

  15. A third-generation microsatellite-based linkage map of the honey bee, Apis mellifera, and its comparison with the sequence-based physical map

    PubMed Central

    Solignac, Michel; Mougel, Florence; Vautrin, Dominique; Monnerot, Monique; Cornuet, Jean-Marie

    2007-01-01

    Background: The honey bee is a key model for social behavior and this feature led to the selection of the species for genome sequencing. A genetic map is a necessary companion to the sequence. In addition, because there was originally no physical map for the honey bee genome project, a meiotic map was the only resource for organizing the sequence assembly on the chromosomes. Results: We present the genetic (meiotic) map here and describe the main features that emerged from comparison with the sequence-based physical map. The genetic map of the honey bee is saturated and the chromosomes are oriented from the centromeric to the telomeric regions. The map is based on 2,008 markers and is about 40 Morgans (M) long, resulting in a marker density of one every 2.05 centiMorgans (cM). For the 186 megabases (Mb) of the genome mapped and assembled, this corresponds to a very high average recombination rate of 22.04 cM/Mb. Honey bee meiosis shows a relatively homogeneous recombination rate along and across chromosomes, as well as within and between individuals. Interference is higher than inferred from the Kosambi function of distance. In addition, numerous recombination hotspots are dispersed over the genome. Conclusion: The very large genetic length of the honey bee genome, its small physical size and an almost complete genome sequence with a relatively low number of genes suggest a very promising future for association mapping in the honey bee, particularly as the existence of haploid males allows easy bulk segregant analysis. PMID:17459148

  16. Optimization with artificial neural network systems - A mapping principle and a comparison to gradient based methods

    NASA Technical Reports Server (NTRS)

    Leong, Harrison Monfook

    1988-01-01

    General formulae for mapping optimization problems into systems of ordinary differential equations associated with artificial neural networks are presented. A comparison is made to optimization using gradient-search methods. The performance measure is the settling time from an initial state to a target state. A simple analytical example illustrates a situation where dynamical systems representing artificial neural network methods would settle faster than those representing gradient-search. Settling time was investigated for a more complicated optimization problem using computer simulations. The problem was a simplified version of a problem in medical imaging: determining loci of cerebral activity from electromagnetic measurements at the scalp. The simulations showed that gradient based systems typically settled 50 to 100 times faster than systems based on current neural network optimization methods.

  17. Comparison of synoptic and climatologically mapped sections in the south Pacific ocean

    SciTech Connect

    Bindoff, N.L.; Wunsch, C. )

    1992-06-01

    To understand the extent to which oceanic climate shifts could be detected, a South Pacific climatology has been used to create pseudosections of temperature, salinity, and other tracers along a zonal and meridional lines at 15[degrees]S and 90[degrees]W, respectively. Interpolations from the climatology were made using combined empirical orthogonal functions and objective mapping. Comparisons are made with independent measurements, taken in 1987, of temperature and salinity at 15[degrees]S. Temperature and salinity fields between the surface and 300 db along the 15[degrees]S section are predicted with an uncertainty sufficiently small to display significant differences in temperature and salinity related to El Nino of 1987. The 90[degrees]W pseudosection is a forecast of a synoptic section to be obtained as part of WOCE in 1992. Explicit values for the smallest temperature shift with depth that could be detected are produced. 17 refs., 10 figs.

  18. Comparison of in situ stratospheric ozone measurements obtained during the MAP/GLOBUS 1983 campaign

    NASA Technical Reports Server (NTRS)

    Aimedieu, P.; Matthews, W. A.; Attmannspacher, W.; Hartmannsgruber, R.; Cisneros, J.; Komhyr, W.; Robbins, D. E.

    1987-01-01

    Data from five types of in situ ozone sensors flown aboard ballons during the MAP/GLOBUS 1983 campaign were found to agree to within 5 percent uncertainty throughout the middle atmosphere. A description of the individual techniques and the error budget is given in addition to explanations for the discrepancies found at higher and lower altitudes. In comparison to UV photometry values, results from two electrochemical techniques were found to be greater in the lower atmosphere and to be lower in the upper atmosphere. In general, olefin chemiluminescence results were within 8 percent of the UV photometry results. Ozone column contents measured by the indigo colorization technique for two altitude regions of about 6 km height were greater than measurements from other techniques by 52 and 17 percent, respectively.

  19. New vegetation type map of India prepared using satellite remote sensing: Comparison with global vegetation maps and utilities

    NASA Astrophysics Data System (ADS)

    Roy, P. S.; Behera, M. D.; Murthy, M. S. R.; Roy, Arijit; Singh, Sarnam; Kushwaha, S. P. S.; Jha, C. S.; Sudhakar, S.; Joshi, P. K.; Reddy, Ch. Sudhakar; Gupta, Stutee; Pujar, Girish; Dutt, C. B. S.; Srivastava, V. K.; Porwal, M. C.; Tripathi, Poonam; Singh, J. S.; Chitale, Vishwas; Skidmore, A. K.; Rajshekhar, G.; Kushwaha, Deepak; Karnatak, Harish; Saran, Sameer; Giriraj, A.; Padalia, Hitendra; Kale, Manish; Nandy, Subrato; Jeganathan, C.; Singh, C. P.; Biradar, C. M.; Pattanaik, Chiranjibi; Singh, D. K.; Devagiri, G. M.; Talukdar, Gautam; Panigrahy, Rabindra K.; Singh, Harnam; Sharma, J. R.; Haridasan, K.; Trivedi, Shivam; Singh, K. P.; Kannan, L.; Daniel, M.; Misra, M. K.; Niphadkar, Madhura; Nagabhatla, Nidhi; Prasad, Nupoor; Tripathi, O. P.; Prasad, P. Rama Chandra; Dash, Pushpa; Qureshi, Qamer; Tripathi, S. K.; Ramesh, B. R.; Gowda, Balakrishnan; Tomar, Sanjay; Romshoo, Shakil; Giriraj, Shilpa; Ravan, Shirish A.; Behera, Soumit Kumar; Paul, Subrato; Das, Ashesh Kumar; Ranganath, B. K.; Singh, T. P.; Sahu, T. R.; Shankar, Uma; Menon, A. R. R.; Srivastava, Gaurav; Neeti; Sharma, Subrat; Mohapatra, U. B.; Peddi, Ashok; Rashid, Humayun; Salroo, Irfan; Krishna, P. Hari; Hajra, P. K.; Vergheese, A. O.; Matin, Shafique; Chaudhary, Swapnil A.; Ghosh, Sonali; Lakshmi, Udaya; Rawat, Deepshikha; Ambastha, Kalpana; Malik, Akhtar H.; Devi, B. S. S.; Gowda, Balakrishna; Sharma, K. C.; Mukharjee, Prashant; Sharma, Ajay; Davidar, Priya; Raju, R. R. Venkata; Katewa, S. S.; Kant, Shashi; Raju, Vatsavaya S.; Uniyal, B. P.; Debnath, Bijan; Rout, D. K.; Thapa, Rajesh; Joseph, Shijo; Chhetri, Pradeep; Ramachandran, Reshma M.

    2015-07-01

    A seamless vegetation type map of India (scale 1: 50,000) prepared using medium-resolution IRS LISS-III images is presented. The map was created using an on-screen visual interpretation technique and has an accuracy of 90%, as assessed using 15,565 ground control points. India has hitherto been using potential vegetation/forest type map prepared by Champion and Seth in 1968. We characterized and mapped further the vegetation type distribution in the country in terms of occurrence and distribution, area occupancy, percentage of protected area (PA) covered by each vegetation type, range of elevation, mean annual temperature and precipitation over the past 100 years. A remote sensing-amenable hierarchical classification scheme that accommodates natural and semi-natural systems was conceptualized, and the natural vegetation was classified into forests, scrub/shrub lands and grasslands on the basis of extent of vegetation cover. We discuss the distribution and potential utility of the vegetation type map in a broad range of ecological, climatic and conservation applications from global, national and local perspectives. We used 15,565 ground control points to assess the accuracy of products available globally (i.e., GlobCover, Holdridge's life zone map and potential natural vegetation (PNV) maps). Hence we recommend that the map prepared herein be used widely. This vegetation type map is the most comprehensive one developed for India so far. It was prepared using 23.5 m seasonal satellite remote sensing data, field samples and information relating to the biogeography, climate and soil. The digital map is now available through a web portal (http://bis.iirs.gov.in).

  20. Classroom Behavior Patterns of EMH, LD, and EH Students.

    ERIC Educational Resources Information Center

    McKinney, James D.; Forman, Susan G.

    1982-01-01

    Investigated whether classroom teachers could differentiate among educable mentally handicapped (EMH), learning disabled (LD), and emotionally handicapped (EH) students based on perceptions of classroom behavior patterns. Ratings from classroom behavior inventory scales revealed that EMH students were distinguished by low intelligence, creativity,…

  1. 7 CFR 1737.32 - Loan Design (LD).

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... plan, see 7 CFR part 1751, subpart B). (b) Because of the importance and complexity of the engineering... to perform both services. See 7 CFR 1753.17. (c) An LD for initial loans or for any exchange areas... first financed facilities to serve the community, see 7 CFR 1735.13(d). (ix) Prior loan project....

  2. 7 CFR 1737.32 - Loan Design (LD).

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 11 2014-01-01 2014-01-01 false Loan Design (LD). 1737.32 Section 1737.32 Agriculture Regulations of the Department of Agriculture (Continued) RURAL UTILITIES SERVICE, DEPARTMENT OF AGRICULTURE PRE-LOAN POLICIES AND PROCEDURES COMMON TO INSURED AND GUARANTEED TELECOMMUNICATIONS LOANS Preloan Studies-Area Coverage Survey and...

  3. 7 CFR 1737.32 - Loan Design (LD).

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... plan, see 7 CFR part 1751, subpart B). (b) Because of the importance and complexity of the engineering... to perform both services. See 7 CFR 1753.17. (c) An LD for initial loans or for any exchange areas... first financed facilities to serve the community, see 7 CFR 1735.13(d). (ix) Prior loan project....

  4. 7 CFR 1737.32 - Loan Design (LD).

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... plan, see 7 CFR part 1751, subpart B). (b) Because of the importance and complexity of the engineering... to perform both services. See 7 CFR 1753.17. (c) An LD for initial loans or for any exchange areas... first financed facilities to serve the community, see 7 CFR 1735.13(d). (ix) Prior loan project....

  5. Visualization of Learning Scenarios with UML4LD

    ERIC Educational Resources Information Center

    Laforcade, Pierre

    2007-01-01

    Present Educational Modelling Languages are used to formally specify abstract learning scenarios in a machine-interpretable format. Current tooling does not provide teachers/designers with some graphical facilities to help them in reusing existent scenarios. They need human-readable representations. This paper discusses the UML4LD experimental…

  6. Comparison of Different EO Sensors for Mapping Tree Species- A Case Study in Southwest Germany

    NASA Astrophysics Data System (ADS)

    Enβle, Fabian; Kattenborn, Teja; Koch, Barbara

    2014-11-01

    The variety of different remote sensing sensors and thus the types of data specifications which are available is increasing continuously. Especially the differences in geometric, radiometric and temporal resolutions of different platforms affect their ability for the mapping of forests. These differences hinder the comparability and application of uniform methods of different remotely sensed data across the same region of interest. The quality and quantity of retrieved forest parameters is directly dependent on the data source, and therefore the objective of this project is to analyse the relationship between the data source and its derived parameters. A comparison of different optical EO-data (e.g. spatial resolution and spectral resolution of specific bands) will help to define the optimum data sets to produce a reproducible method to provide additional inputs to the Dragon cooperative project, specifically to method development for woody biomass estimation and biodiversity assessment services. This poster presents the first results on tree species mapping in a mixed temperate forest by satellite imagery taken from four different sensors. Tree species addressed in this pilot study are: Scots pine (Pinus sylvestris), sessile oak (Quercus petraea) and red oak (Quercus rubra). The spatial resolution varies from 2m to 30m and the spectral resolutions range from 8bands up to 155bands.

  7. SPIRAL field mapping on NSTX for comparison to divertor RF heat deposition

    NASA Astrophysics Data System (ADS)

    Hosea, J. C.; Perkins, R.; Jaworski, M. A.; Kramer, G. J.; Ahn, J.-W.; Bertelli, N.; Gerhardt, S.; Gray, T. K.; LeBlanc, B. P.; Maingi, R.; Phillips, C. K.; Roquemore, L.; Ryan, P. M.; Sabbagh, S.; Taylor, G.; Tritz, K.; Wilson, J. R.; NSTX Team

    2014-02-01

    Field-aligned losses of HHFW power in the SOL of NSTX have been studied with IR cameras and probes, but the interpretation of the data depends somewhat on the magnetic equilibrium reconstruction. Both EFIT02 and LRDFIT04 magnetic equilibria have been used with the SPIRAL code to provide field mappings in the scrape off layer (SOL) on NSTX from the midplane SOL in front of the HHFW antenna to the divertor regions, where the heat deposition spirals are measured. The field-line mapping spiral produced at the divertor plate with LRDFIT04 matches the HHFW-produced heat deposition best, in general. An independent method for comparing the field-line strike patterns on the outer divertor for the two equilibria is provided by measuring Langmuir probe characteristics in the vicinity of the outer vessel strike radius (OVSR) and observing the effect on floating potential, saturation current, and zero-probe-voltage current (IV=0) with the crossing of the OVSR over the probe. Interestingly, these comparisons also reveal that LRDFIT04 gives the more accurate location of the predicted OVSR, and confirm that the RF power flow in the SOL is essentially along the magnetic field lines. Also, the probe characteristics and IV=0 data indicate that current flows under the OVSR in the divertor tiles in most cases studied.

  8. Oxygen extraction fraction measurement using quantitative susceptibility mapping: Comparison with positron emission tomography.

    PubMed

    Kudo, Kohsuke; Liu, Tian; Murakami, Toshiyuki; Goodwin, Jonathan; Uwano, Ikuko; Yamashita, Fumio; Higuchi, Satomi; Wang, Yi; Ogasawara, Kuniaki; Ogawa, Akira; Sasaki, Makoto

    2016-08-01

    The purposes of this study are to establish oxygen extraction fraction (OEF) measurements using quantitative susceptibility mapping (QSM) of magnetic resonance imaging (MRI), and to compare QSM-OEF data with the gold standard (15)O positron emission tomography (PET). Twenty-six patients with chronic unilateral internal carotid artery or middle cerebral artery stenosis or occlusion, and 15 normal subjects were included. MRI scans were conducted using a 3.0 Tesla scanner with a three-dimensional spoiled gradient recalled sequence. QSM images were created using the morphology-enabled dipole inversion method, and OEF maps were generated from QSM images using extraction of venous susceptibility induced by deoxygenated hemoglobin. Significant correlation of relative OEF ratio to contra-lateral hemisphere between QSM-OEF and PET-OEF was observed (r = 0.62, p < 0.001). The local (intra-section) correlation was also significant (r = 0.52, p < 0.001) in patients with increased PET-OEF. The sensitivity and specificity of OEF increase in QSM was 0.63 (5/8) and 0.89 (16/18), respectively, in comparison with PET. In conclusion, good correlation was achieved between QSM-OEF and PET-OEF in the identification of elevated OEF in affected hemispheres of patients with unilateral chronic steno-occlusive disease. PMID:26661168

  9. Comparison of peptide mass mapping and electron capture dissociation as assays for histone posttranslational modifications

    NASA Astrophysics Data System (ADS)

    Zhang, Liwen; Freitas, Michael A.

    2004-05-01

    Posttranslational modifications of core histones play a critical role in the structure of chromatin and the regulation of gene activities. Improved techniques for determining these modification sites may lead to a better understanding of histone regulation at the molecular level. LC-MS peptide mass mapping was performed on pepsin, trypsin and Glu-C digests of bovine thymus H4 using a QqTOF instrument. The well established modification sites of H4 (acetylation of K8, 12, 16 and methylation of K20) were observed in addition to several recently discovered modifications including: methylation of K31, 44, 59 and acetylation of K20, 77, 79. For comparison, electron capture dissociation (ECD) was performed on intact H4 along with several peptides from enzymatic digestion. The results from the ECD experiments of histone H4 indicated the acetylation of K5, 12, 16, 31, 91 and the methylation of K20 and 59 in good agreement with the result from peptide mapping. The work is dedicated to Alan G. Marshall on his 60th birthday. His endeavors in the advancement of FT-ICR facilitated experiments reported herein.

  10. Comparison of ArcToolbox and Terrain Tiles processing procedures for inundation mapping in mountainous terrain.

    PubMed

    Darnell, Andrew; Wise, Richard; Quaranta, John

    2013-01-01

    Floodplain management consists of efforts to reduce flood damage to critical infrastructure and to protect the life and health of individuals from flooding. A major component of this effort is the monitoring of flood control structures such as dams because the potential failure of these structures may have catastrophic consequences. To prepare for these threats, engineers use inundation maps that illustrate the flood resulting from high river stages. To create the maps, the structure and river systems are modeled using engineering software programs, and hydrologic events are used to simulate the conditions leading to the failure of the structure. The output data are then exported to other software programs for the creation of inundation maps. Although the computer programs for this process have been established, the processing procedures vary and yield inconsistent results. Thus, these processing methods need to be examined to determine the functionality of each in floodplain management practices. The main goal of this article is to present the development of a more integrated, accurate, and precise graphical interface tool for interpretation by emergency managers and floodplain engineers. To accomplish this purpose, a potential dam failure was simulated and analyzed for a candidate river system using two processing methods: ArcToolbox and Terrain Tiles. The research involved performing a comparison of the outputs, which revealed that both procedures yielded similar inundations for single river reaches. However, the results indicated key differences when examining outputs for large river systems. On the basis of criteria involving the hydrologic accuracy and effects on infrastructure, the Terrain Tiles inundation surpassed the ArcToolbox inundation in terms of following topography and depicting flow rates and flood extents at confluences, bends, and tributary streams. Thus, the Terrain Tiles procedure is a more accurate representation of flood extents for use by

  11. An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae.

    PubMed Central

    Philipp, W J; Poulet, S; Eiglmeier, K; Pascopella, L; Balasubramanian, V; Heym, B; Bergh, S; Bloom, B R; Jacobs, W R; Cole, S T

    1996-01-01

    An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis, was constructed by using a twin-pronged approach. Pulsed-field gel electrophoretic analysis enabled cleavage sites for Asn I and Dra I to be positioned on the 4.4-Mb circular chromosome, while, in parallel, clones from two cosmid libraries were ordered into contigs by means of fingerprinting and hybridization mapping. The resultant contig map was readily correlated with the physical map of the genome via the landmarked restriction sites. Over 165 genes and markers were localized on the integrated map, thus enabling comparisons with the leprosy bacillus, Mycobacterium leprae, to be undertaken. Mycobacterial genomes appear to have evolved as mosaic structures since extended segments with conserved gene order and organization are interspersed with different flanking regions. Repetitive sequences and insertion elements are highly abundant in M. tuberculosis, but the distribution of IS6110 is apparently nonrandom. Images Fig. 1 Fig. 2 PMID:8610181

  12. The Reliability, Sensitivity and Criterion-Related Validity of Concept Comparisons and Concept Maps for Assessing Reading Comprehension.

    ERIC Educational Resources Information Center

    Parker, Richard; Tindal, Gerald

    The reliability, sensitivity, and criterion-related validity of concept comparison (CC) ratings and computer-derived multidimensional scaling (MDS) maps were studied as ways of assessing reading comprehension. Fifteen experts (2 district coordinators and 13 reading specialists/special education teachers) were included in this study. Reliability…

  13. A Comparison of Web-Based Concept Mapping Tasks for Alternative Assessment in Distance Teacher Education

    ERIC Educational Resources Information Center

    Oliver, Kevin

    2008-01-01

    Three sections of the same distance education class completed a series of Web-based concept map assessments using one of two methods. Open-ended maps applied in section 1 led students to conduct more relational thinking overall, but variance in map items was very high introducing more subjectivity in scoring. Pre-selected term mapping applied in…

  14. AOTV Low L/D Preliminary Aeroheating Design Environment

    NASA Technical Reports Server (NTRS)

    Engel, C. D.

    1983-01-01

    The aerothermal environment to a configuration with a brake face which exhibits a low lift to drag ratio (L/D) of below 0.75 is emphasized. The five times geosynchronous (5 x Geo) orbit entry was selected as the design trajectory. The available data base and math model is discussed. The resulting preliminary design environment is documented. Recommendations as to how the design environment may be improved through technological advances are given.

  15. Substrate-Driven Mapping of the Degradome by Comparison of Sequence Logos

    PubMed Central

    Fuchs, Julian E.; von Grafenstein, Susanne; Huber, Roland G.; Kramer, Christian; Liedl, Klaus R.

    2013-01-01

    Sequence logos are frequently used to illustrate substrate preferences and specificity of proteases. Here, we employed the compiled substrates of the MEROPS database to introduce a novel metric for comparison of protease substrate preferences. The constructed similarity matrix of 62 proteases can be used to intuitively visualize similarities in protease substrate readout via principal component analysis and construction of protease specificity trees. Since our new metric is solely based on substrate data, we can engraft the protease tree including proteolytic enzymes of different evolutionary origin. Thereby, our analyses confirm pronounced overlaps in substrate recognition not only between proteases closely related on sequence basis but also between proteolytic enzymes of different evolutionary origin and catalytic type. To illustrate the applicability of our approach we analyze the distribution of targets of small molecules from the ChEMBL database in our substrate-based protease specificity trees. We observe a striking clustering of annotated targets in tree branches even though these grouped targets do not necessarily share similarity on protein sequence level. This highlights the value and applicability of knowledge acquired from peptide substrates in drug design of small molecules, e.g., for the prediction of off-target effects or drug repurposing. Consequently, our similarity metric allows to map the degradome and its associated drug target network via comparison of known substrate peptides. The substrate-driven view of protein-protein interfaces is not limited to the field of proteases but can be applied to any target class where a sufficient amount of known substrate data is available. PMID:24244149

  16. The construction of a tetraploid cotton genome-wide comprehensive reference map and the comparison with cotton physical mapping information

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The integration of multiple genomic maps provides a higher density of markers and greater genome coverage, which not only facilitates the identification and positioning of QTLs and candidate genes, but also provides a basic structure for the genome sequence assembly. However, the diversity in marke...

  17. ReVeaLD: a user-driven domain-specific interactive search platform for biomedical research.

    PubMed

    Kamdar, Maulik R; Zeginis, Dimitris; Hasnain, Ali; Decker, Stefan; Deus, Helena F

    2014-02-01

    Bioinformatics research relies heavily on the ability to discover and correlate data from various sources. The specialization of life sciences over the past decade, coupled with an increasing number of biomedical datasets available through standardized interfaces, has created opportunities towards new methods in biomedical discovery. Despite the popularity of semantic web technologies in tackling the integrative bioinformatics challenge, there are many obstacles towards its usage by non-technical research audiences. In particular, the ability to fully exploit integrated information needs using improved interactive methods intuitive to the biomedical experts. In this report we present ReVeaLD (a Real-time Visual Explorer and Aggregator of Linked Data), a user-centered visual analytics platform devised to increase intuitive interaction with data from distributed sources. ReVeaLD facilitates query formulation using a domain-specific language (DSL) identified by biomedical experts and mapped to a self-updated catalogue of elements from external sources. ReVeaLD was implemented in a cancer research setting; queries included retrieving data from in silico experiments, protein modeling and gene expression. ReVeaLD was developed using Scalable Vector Graphics and JavaScript and a demo with explanatory video is available at http://www.srvgal78.deri.ie:8080/explorer. A set of user-defined graphic rules controls the display of information through media-rich user interfaces. Evaluation of ReVeaLD was carried out as a game: biomedical researchers were asked to assemble a set of 5 challenge questions and time and interactions with the platform were recorded. Preliminary results indicate that complex queries could be formulated under less than two minutes by unskilled researchers. The results also indicate that supporting the identification of the elements of a DSL significantly increased intuitiveness of the platform and usability of semantic web technologies by domain users

  18. Comparison of stochastic and deterministic methods for mapping groundwater level spatial variability in sparsely monitored basins.

    PubMed

    Varouchakis, Epsilon A; Hristopulos, D T

    2013-01-01

    In sparsely monitored basins, accurate mapping of the spatial variability of groundwater level requires the interpolation of scattered data. This paper presents a comparison of deterministic interpolation methods, i.e. inverse distance weight (IDW) and minimum curvature (MC), with stochastic methods, i.e. ordinary kriging (OK), universal kriging (UK) and kriging with Delaunay triangulation (DK). The study area is the Mires Basin of Mesara Valley in Crete (Greece). This sparsely sampled basin has limited groundwater resources which are vital for the island's economy; spatial variations of the groundwater level are important for developing management and monitoring strategies. We evaluate the performance of the interpolation methods with respect to different statistical measures. The Spartan variogram family is applied for the first time to hydrological data and is shown to be optimal with respect to stochastic interpolation of this dataset. The three stochastic methods (OK, DK and UK) perform overall better than the deterministic counterparts (IDW and MC). DK, which is herein for the first time applied to hydrological data, yields the most accurate cross-validation estimate for the lowest value in the dataset. OK and UK lead to smooth isolevel contours, whilst DK and IDW generate more edges. The stochastic methods deliver estimates of prediction uncertainty which becomes highest near the southeastern border of the basin. PMID:22311559

  19. Evaluation of multiple comparison correction procedures in drug assessment studies using LORETA maps.

    PubMed

    Alonso, Joan Francesc; Romero, Sergio; Mañanas, Miguel Ángel; Rojas, Mónica; Riba, Jordi; Barbanoj, Manel José

    2015-10-01

    The identification of the brain regions involved in the neuropharmacological action is a potential procedure for drug development. These regions are commonly determined by the voxels showing significant statistical differences after comparing placebo-induced effects with drug-elicited effects. LORETA is an electroencephalography (EEG) source imaging technique frequently used to identify brain structures affected by the drug. The aim of the present study was to evaluate different methods for the correction of multiple comparisons in the LORETA maps. These methods which have been commonly used in neuroimaging and also simulated studies have been applied on a real case of pharmaco-EEG study where the effects of increasing benzodiazepine doses on the central nervous system measured by LORETA were investigated. Data consisted of EEG recordings obtained from nine volunteers who received single oral doses of alprazolam 0.25, 0.5, and 1 mg, and placebo in a randomized crossover double-blind design. The identification of active regions was highly dependent on the selected multiple test correction procedure. The combined criteria approach known as cluster mass was useful to reveal that increasing drug doses led to higher intensity and spread of the pharmacologically induced changes in intracerebral current density. PMID:26040586

  20. Cerebral glucose metabolism in corticobasal degeneration comparison with progressive supranuclear palsy using statistical mapping analysis.

    PubMed

    Juh, Rahyeong; Pae, Chi-Un; Kim, Tae-Suk; Lee, Chang-Uk; Choe, Boyoung; Suh, Taesuk

    This study measured the cerebral glucose metabolism in patients suffering from corticobasal degeneration (CBD) and progressive supranuclear palsy (PSP). The aim was to determine if there is a different metabolic pattern using (18)F-labeled 2-deoxyglucose ((18)F-FDG) positron emission tomography (PET). The regional cerebral glucose metabolism was examined in 8 patients diagnosed clinically with CBD (mean age 69.6 +/- 7.8 years; male/female: 5/3), 8 patients with probable PSP (mean age 67.8 +/- 4.5 years; male/female: 4/4) and 22 healthy controls. The regional cerebral glucose metabolism between the three groups was compared using statistical parametric mapping (SPM) with a voxel-by-voxel approach (p < 0.001, 200-voxel level). Compared with the normal controls, asymmetry in the regional glucose metabolism was observed in the parietal, frontal and cingulate in the CBD patients. In the PSP patients, the glucose metabolism was lower in the orbitofrontal, middle frontal, cingulate, thalamus and mid-brain than their age matched normal controls. A comparison of the two patient groups demonstrated relative hypometabolism in the thalamus, the mid-brain in the PSP patients and the parietal lobe in CBD patients. These results suggest that when making a differential diagnosis of CBD and PSP, voxel-based analysis of the (18)F-FDG PET images using a SPM might be a useful tool in clinical examinations. PMID:15936506

  1. Improving Protocols for Protein Mapping through Proper Comparison to Crystallography Data

    PubMed Central

    Lexa, Katrina W.; Carlson, Heather A.

    2013-01-01

    Computational approaches to fragment-based drug design (FBDD) can complement experiments and facilitate the identification of potential hot spots along the protein surface. However, the evaluation of computational methods for mapping binding sites frequently focuses upon the ability to reproduce crystallographic coordinates to within a low RMSD threshold. This dependency on the deposited coordinate data overlooks the original electron density from the experiment, thus techniques may be developed based upon subjective - or even erroneous - atomic coordinates. This can become a significant drawback in applications to systems where the location of hot spots is unknown. Based on comparison to crystallographic density, we previously showed that mixed-solvent molecular dynamics (MixMD) accurately identifies the active site for HEWL, with acetonitrile as an organic solvent. Here, we concentrated on the influence of protic solvent on simulation and refined the optimal MixMD approach for extrapolation of the method to systems without established sites. Our results establish an accurate approach for comparing simulations to experiment. We have outlined the most efficient strategy for MixMD, based on simulation length and number of runs. The development outlined here makes MixMD a robust method which should prove useful across a broad range of target structures. Lastly, our results with MixMD match experimental data so well that consistency between simulations and density may be a useful way to aid the identification of probes vs waters during the refinement of future MSCS crystallographic structures. PMID:23327200

  2. Improving protocols for protein mapping through proper comparison to crystallography data.

    PubMed

    Lexa, Katrina W; Carlson, Heather A

    2013-02-25

    Computational approaches to fragment-based drug design (FBDD) can complement experiments and facilitate the identification of potential hot spots along the protein surface. However, the evaluation of computational methods for mapping binding sites frequently focuses upon the ability to reproduce crystallographic coordinates to within a low RMSD threshold. This dependency on the deposited coordinate data overlooks the original electron density from the experiment, thus techniques may be developed based upon subjective-or even erroneous-atomic coordinates. This can become a significant drawback in applications to systems where the location of hot spots is unknown. On the basis of comparison to crystallographic density, we previously showed that mixed-solvent molecular dynamics (MixMD) accurately identifies the active site for HEWL, with acetonitrile as an organic solvent. Here, we concentrated on the influence of protic solvent on simulation and refined the optimal MixMD approach for extrapolation of the method to systems without established sites. Our results establish an accurate approach for comparing simulations to experiment. We have outlined the most efficient strategy for MixMD, based on simulation length and number of runs. The development outlined here makes MixMD a robust method which should prove useful across a broad range of target structures. Lastly, our results with MixMD match experimental data so well that consistency between simulations and density may be a useful way to aid the identification of probes vs waters during the refinement of future multiple solvent crystallographic structures. PMID:23327200

  3. Construction of the physical map for three loci in chromosome band 13q14: comparison to the genetic map.

    PubMed Central

    Higgins, M J; Turmel, C; Noolandi, J; Neumann, P E; Lalande, M

    1990-01-01

    Pulsed-field gel electrophoresis (PFGE) and deletion mapping are being used to construct a physical map of the long arm of human chromosome 13. The present study reports a 2700-kilobase (kb) Not I long-range restriction map encompassing the 13q14-specific loci D13S10, D13S21, and D13S22, which are detected by the cloned DNA markers p7D2, pG24E2.4, and pG14E1.9, respectively. Analysis of a panel of seven cell lines that showed differential methylation at a Not I site between D13S10 and D13S21 proved physical linkage of the two loci to the same 875-kb Not I fragment. D13S22 mapped to a different Not I fragment, precluding the possibility that D13S22 is located between D13S10 and D13S21. PFGE analysis of Not I partial digests placed the 1850-kb Not I fragment containing D13S22 immediately adjacent to the 875-kb fragment containing the other two loci. The proximal rearrangement breakpoint in a cell line carrying a del13(q14.1q21.2) was detected by D13S21 but not by D13S10, demonstrating that D13S21 lies proximal to D13S10. Quantitative analysis of hybridization signals of the three DNA probes to DNA from the same cell line indicated that only D13S10 was deleted, establishing the order of these loci to be cen-D13S22-D13S21-D13S10-tel. Surprisingly, this order was estimated to be 35,000 times less likely than that favored by genetic linkage analysis. Images PMID:1970636

  4. Marine habitat mapping of the Milford Haven Waterway, Wales, UK: Comparison of facies mapping and EUNIS classification for monitoring sediment habitats in an industrialized estuary

    NASA Astrophysics Data System (ADS)

    Carey, Drew A.; Hayn, Melanie; Germano, Joseph D.; Little, David I.; Bullimore, Blaise

    2015-06-01

    A detailed map and dataset of sedimentary habitats of the Milford Haven Waterway (MHW) was compiled for the Milford Haven Waterway Environmental Surveillance Group (MHWESG) from seafloor images collected in May, 2012 using sediment-profile and plan-view imaging (SPI/PV) survey techniques. This is the most comprehensive synoptic assessment of sediment distribution and benthic habitat composition available for the MHW, with 559 stations covering over 40 km2 of subtidal habitats. In the context of the MHW, an interpretative framework was developed that classified each station within a 'facies' that included information on the location within the waterway and inferred sedimentary and biological processes. The facies approach provides critical information on landscape-scale habitats including relative location and inferred sediment transport processes and can be used to direct future monitoring activities within the MHW and to predict areas of greatest potential risk from contaminant transport. Intertidal sediment 'facies' maps have been compiled in the past for MHW; this approach was expanded to map the subtidal portions of the waterway. Because sediment facies can be projected over larger areas than individual samples (due to assumptions based on physiography, or landforms) they represent an observational model of the distribution of sediments in an estuary. This model can be tested over time and space through comparison with additional past or future sample results. This approach provides a means to evaluate stability or change in the physical and biological conditions of the estuarine system. Initial comparison with past results for intertidal facies mapping and grain size analysis from grab samples showed remarkable stability over time for the MHW. The results of the SPI/PV mapping effort were cross-walked to the European Nature Information System (EUNIS) classification to provide a comparison of locally derived habitat mapping with European-standard habitat

  5. Comparison of the Kriging and neural network methods for modeling foF2 maps over North China region

    NASA Astrophysics Data System (ADS)

    Jiang, Chunhua; Zhou, Chen; Liu, Jing; Lan, Ting; Yang, Guobin; Zhao, Zhengyu; Zhu, Peng; Sun, Hengqing; Cui, Xiao

    2015-07-01

    The F2 layer critical frequency of the ionosphere (foF2) is one of the most significant parameters for studying the ionosphere. To investigate the large-scale characteristics of the ionosphere over particular regions, modeling foF2 is an effective method. In this paper, we use both the Kriging (KG) and neural network (NN) methods to reconstruct foF2 maps over North China. The neural network is trained by the genetic algorithm (GA) to avoid the 'local minimum' phenomenon in most NN applications. We then carry out a comparison between foF2 provided by both the KG and NN methods with vertical model operation of ionosonde data including Beijing, Qingdao, Suzhou, and Changchun. All of the foF2 data used in the comparison are obtained from the oblique and vertical mode operation of ionosonde from the China Ground-based Seismo-ionospheric Monitoring Network. To allow for a possible seasonal and diurnal variation, data obtained from summer, winter, and equinox months are applied in the present comparison. In addition, we make a comparison during a magnetic storm period. The results of our comparisons demonstrate that both the KG and NN methods are appropriate tools for modeling foF2 maps. However, when the data set is spare, the performance of the NN method is better than the KG method. On the other hand, the KG method is more robust than the NN method during a magnetic storm.

  6. Comparisons of Four Approximation Algorithms for Large-Scale Linkage Map Construction

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Efficient construction of large-scale linkage maps is highly desired in current gene mapping projects. To evaluate the performance of available approaches in the literature, four published methods, the insertion, seriation (SER), neighbor mapping (NM), and unidirectional growth (UG) were compared on...

  7. Comparison of peanut gentics and physical maps provided insights on collinearity, reversions and translocations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genetic and physical maps are the valuable resources for peanut research community in understanding genome organization and serving as the basis for map-based cloning and marker-assisted selection. Physical maps of two diploid wild peanut progenitor species, Arachis duranensis (A genome) and A. ipae...

  8. Analysis and mapping of mountain permafrost data: a comparison between two machine learning algorithms

    NASA Astrophysics Data System (ADS)

    Deluigi, Nicola; Lambiel, Christophe; Kanevski, Mikhail

    2015-04-01

    , producing results less optimistic than other simple topo-climatic model simulations (and more consistent with the field reality). The present research deals with the analysis and mapping of alpine permafrost patterns at the micro-scale for data gathered in the Western part of the Alps (Valais, Switzerland). An input dataset was constructed using local topographic variables derived from a digital elevation model, geology, climate data, etc. The permafrost data were taken from rock glacier inventories and completed by the geophysical and thermal data collected during the field campaigns. As poor permafrost evidences are available for rockwalls, we mainly focused the prediction in loose sediments. A comparison between RF and SVM algorithms will be presented as well as the classification results (distribution maps) along with corresponding model uncertainties.

  9. Two phase choke flow in tubes with very large L/D

    NASA Technical Reports Server (NTRS)

    Hendricks, R. C.; Simoneau, R. J.

    1977-01-01

    Data were obtained for two phase and gaseous choked flow nitrogen in a long constant area duct of 16200 L/D with a diverging diffuser attached to the exit. Flow rate data were taken along five isotherms (reduced temperature of 0.81, 0.96, 1.06, 1.12, and 2.34) for reduced pressures to 3. The flow rate data were mapped in the usual manner using stagnation conditions at the inlet mixing chamber upstream of the entrance length. The results are predictable by a two phase homogeneous equilibrium choking flow model which includes wall friction. A simplified theory which in essence decouples the long tube region from the high acceleration choking region also appears to predict the data resonably well, but about 15 percent low.

  10. Two phase choke flow in tubes with very large L/D

    NASA Technical Reports Server (NTRS)

    Hendricks, R. C.; Simoneau, R. J.

    1977-01-01

    Two phase and gaseous choked flow data for fluid nitrogen were obtained for a test section which was a long constant area duct of 16 200 L/D with a diverging diffuser attached to the exit. Flow rate data were taken along five isotherms (reduced temperature of 0.81, 0.96, 1.06, 1.12, and 2.34) for reduced pressures to 3. The flow rate data were mapped in the usual manner using stagnation conditions at the inlet mixing chamber upstream of the entrance length. The results are predictable by a two-phase homogeneous equilibrium choking flow model which includes wall fraction. A simplified theory which in essence decouples the long tube region from the high acceleration choking region also appears to predict the data reasonably well, but about 15 percent low.

  11. Inclusion of Intrinsic Processing Difficulties in LD Diagnostic Models: A Critical Review.

    ERIC Educational Resources Information Center

    Dean, Vincent J.; Burns, Matthew K.

    2002-01-01

    The use of the processing component for learning disabilities (LD) definitions is discussed by examining its theoretical basis, large-scale implementation, and researched classroom effectiveness. Results indicate the processing definition of LD does not differentiate students with LD from low achievers, is inconsistently implemented, and does not…

  12. Characteristics and use of the Illumina BovineLD BeadChip

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genotypic information from the 6,909-SNP Illumina BovineLD (LD) Genotyping BeadChip, which replaced the Illumina GoldenGate Bovine3K (3K) Genotyping BeadChip, have been included in US genomic evaluations since November 2011. Of 73 LD single nucleotide polymorphisms (SNP) not used in genomic evaluati...

  13. Understanding School Dropout for Urban, Ethnic Minority Teenage Mothers with Learning Disabilities (LD). Disability Research Brief

    ERIC Educational Resources Information Center

    Taylor-Ritzler, Tina; Balcazar, Fabricio E.; McDonald, Katherine

    2007-01-01

    Youth who experience either LD or teenage motherhood often drop out of school. Further, about 50% of young girls with LD become mothers by their early 20s compared to 28% of young women in the general population. There is therefore a high likelihood that teenage mothers with LD will drop out of school. Dropping out of school is of concern because…

  14. A comparison of two conformal mapping techniques applied to an aerobrake body

    NASA Technical Reports Server (NTRS)

    Hommel, Mark J.

    1987-01-01

    Conformal mapping is a classical technique which has been utilized for solving problems in aerodynamics and hydrodynamics. Conformal mapping has been successfully applied in the construction of grids around airfoils, engine inlets and other aircraft configurations. Conformal mapping techniques were applied to an aerobrake body having an axis of symmetry. Two different approaches were utilized: (1) Karman-Trefftz transformation; and (2) Point Wise Schwarz Christoffel transformation. In both cases, the aerobrake body was mapped onto a near circle, and a grid was generated in the mapped plane. The mapped body and grid were then mapped back into physical space and the properties of the associated grids were examined. Advantages and disadvantages of both approaches are discussed.

  15. BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression

    PubMed Central

    Ogasawara, Osamu; Otsuji, Makiko; Watanabe, Kouji; Iizuka, Takayasu; Tamura, Takuro; Hishiki, Teruyoshi; Kawamoto, Shoko; Okubo, Kousaku

    2006-01-01

    BodyMap-Xs () is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically. PMID:16381946

  16. Comparison of global ionospheric maps, high-orbital and low-orbital radio tomography.

    NASA Astrophysics Data System (ADS)

    Kunitsyn, Viacheslav E.; Andreeva, Elena S.; Nesterov, Ivan A.; Kalashnikova, Svetlana A.; Padokhin, Artem M.

    2010-05-01

    Observations on the GPS receivers networks which are being actively developed at present provide the input data for constructing global ionospheric maps (GIM) of the distributions of total electron content (TEC) in the ionosphere. The methods applied in the GIM construction at several data processing centers are different although all based on the common idea of finding the appropriate model parameters to fit the selected model of the vertical distribution of electron density to the observed GPS data. At the same time, the existing global IGS network together with several regional GPS networks open the possibility for solving the problem of 4D (spatiotemporal) ionospheric radio tomography (RT) based on the data of high-orbiting navigational satellite systems (the high orbital radio tomography, HORT). The approaches used in HORT are similar to those applied and found highly efficient in 2D low-orbital radio tomography (LORT). The purpose of the present work is to compare TEC estimations based on GIMs, calculated by different centers, with HORT and LORT reconstructions observed at different geomagnetic activity. The results of such comparison along RT systems in Russia and Alaska during the periods of geomagnetic storms of 2003-2004 are reported and discussed. The reconstructions for quiet periods are basically similar, although higher GIM and HORT TEC compared to LORT TEC, which might be due to the plasmaspheric contribution, are still noteworthy. However, during the geomagnetic storms, GIM TEC significantly differs from either LORT and HORT TEC. The work was supported by the Russian Foundation for Basic Research (grants nos. 10-05-01126, 08-05-00676). The authors acknowledge IGS for GNSS data. We are also grateful to our colleagues in PGI and NWRS for the shared raw RT data.

  17. A Comparison of Five FMRI Protocols for Mapping Speech Comprehension Systems

    PubMed Central

    Binder, Jeffrey R.; Swanson, Sara J.; Hammeke, Thomas A.; Sabsevitz, David S.

    2008-01-01

    Aims Many fMRI protocols for localizing speech comprehension have been described, but there has been little quantitative comparison of these methods. We compared five such protocols in terms of areas activated, extent of activation, and lateralization. Methods FMRI BOLD signals were measured in 26 healthy adults during passive listening and active tasks using words and tones. Contrasts were designed to identify speech perception and semantic processing systems. Activation extent and lateralization were quantified by counting activated voxels in each hemisphere for each participant. Results Passive listening to words produced bilateral superior temporal activation. After controlling for pre-linguistic auditory processing, only a small area in the left superior temporal sulcus responded selectively to speech. Active tasks engaged an extensive, bilateral attention and executive processing network. Optimal results (consistent activation and strongly lateralized pattern) were obtained by contrasting an active semantic decision task with a tone decision task. There was striking similarity between the network of brain regions activated by the semantic task and the network of brain regions that showed task-induced deactivation, suggesting that semantic processing occurs during the resting state. Conclusions FMRI protocols for mapping speech comprehension systems differ dramatically in pattern, extent, and lateralization of activation. Brain regions involved in semantic processing were identified only when an active, non-linguistic task was used as a baseline, supporting the notion that semantic processing occurs whenever attentional resources are not controlled. Identification of these lexical-semantic regions is particularly important for predicting language outcome in patients undergoing temporal lobe surgery. PMID:18513352

  18. Social comparison processes, narrative mapping and their shaping of the cancer experience: a case study of an elite athlete.

    PubMed

    Sparkes, Andrew C; Pérez-Samaniego, Víctor; Smith, Brett

    2012-09-01

    Drawing on data generated by life history interviews and fieldwork observations we illuminate the ways in which a young elite athlete named David (a pseudonym) gave meaning to his experiences of cancer that eventually led to his death. Central to this process were the ways in which David utilized both social comparisons and a narrative map provided by the published autobiography of Lance Armstrong (2000). Our analysis reveals the selective manner in which social comparison processes operated around the following key dimensions: mental attitude to treatment; the sporting body; the ageing body; and physical appearance. The manner in which different comparison targets were chosen, the ways in which these were framed by Armstrong's autobiography, and the work that the restitution narrative as an actor did in this process are also examined. Some reflections are offered regarding the experiential consequences of the social comparison processes utilized by David when these are shaped by specific forms of embodiment and selective narrative maps of cancer survival. PMID:22199179

  19. Comparison of Kriging and coKriging for soil contamination mapping in abandoned mine sites

    NASA Astrophysics Data System (ADS)

    Lee, Hyeongyu; Choi, Yosoon

    2015-04-01

    Soil contamination mapping around abandoned mines is an important task for the planning and design of mine reclamation. This study compared the ordinary Kriging and the co-Kriging methods for the soil contamination mapping in abandoned mine sites. Four approaches were conducted as follows: (1) soil contamination mapping using the ordinary Kriging and Inductively Coupled Plasma (ICP) data only; (2) soil contamination mapping using the ordinary Kriging and Portable X-Ray Fluorescence (PXRF) data only; (3) soil contamination mapping using the ordinary Kriging and integrated data from ICP and PXRF; and (4) soil contamination mapping using the co-Kriging and integrated data from ICP and PXRF. Results indicate that the approach 3 provides substantial improvements over other three approaches including a more reasonable spatial pattern of soil contamination and reduction in the error of its estimates.

  20. Comparison between one day and two days protocols for sentinel node mapping of breast cancer patients.

    PubMed

    Ali, Jangijoo; Alireza, Rezapanah; Mostafa, Mehrabibahar; Naser, Forghani Mohammad; Bahram, Memar; Ramin, Sadeghi

    2011-01-01

    Sentinel node biopsy can decrease the morbidity of breast cancer treatment significantly by sparing many patients of axillary lymph node dissection and resulting arm lymphedema. Despite widespread use of sentinel node mapping for breast cancer patients almost all aspects of this procedure are controversial; such as: type of the radiotracer, eligibility, time of injection, etc. One of these controversial issues is the efficacy of 2 days protocol (injection of the tracer on one day and sentinel node mapping and surgery on the following day). The main reason to perform 2 days protocol is the ease of operation room scheduling the patient does not need to complete injection and imaging in the nuclear medicine department. Despite widespread use of 2 days protocol for sentinel node mapping, very few studies have specifically evaluated this protocol in comparison to 1 day protocol and also the false negative rate which is the better index of sentinel node mapping success. Most of the above studies used tracers with large particle size such as (99m)Tc-sulfur colloid. Tracers with small particle size can theoretically be washed out from the real sentinel nodes and move to the second echelon nodes, so some recommended using large particle size radiotracers for the 2 days protocol. In this study, we compared the false negative rate of sentinel node mapping between 1 and 2 days protocols using intradermal injection of (99m)Tc-antimony sulfide colloid ((99m)Tc-SbSC) which has very small particle size. Eighty patients with early stage breast cancer (clinical stages of I and II) were evaluated. The diagnosis of the breast cancer was established by either excisional or core needle biopsy. The patients didn't take any chemotherapeutic drug before surgery and were divided into two groups: 1 day (Group I) and 2 days (Group II) protocols (45 in Group I and 35 in Group II). For Group I, periareolar intradermal injections of 0.5Bq/0.2mL (99m)Tc-SbSC were applied for patients without

  1. A comparison of the radon potential map with reported radon data

    SciTech Connect

    DeVaynes, M.; Krueger, J.W.

    1995-12-31

    Air Chek, Inc., maintains an extensive database of more than one million radon test results. These test results can be sorted, mapped and studied by zip code and, in most cases, by street address. A study was conducted comparing this radon testing data with the Environmental Protection Agency (EPA) Radon Potential Map. The EPA Potential Map assigns each of the 3141 counties in the United States to one of three different priorities. The data in the Air Chek database was sorted by zip code, assigned to the appropriate county and then compared with the EPA Radon Potential Map.

  2. Numerical ragweed pollen forecasts using different source maps: a comparison for France

    NASA Astrophysics Data System (ADS)

    Zink, Katrin; Kaufmann, Pirmin; Petitpierre, Blaise; Broennimann, Olivier; Guisan, Antoine; Gentilini, Eros; Rotach, Mathias W.

    2016-06-01

    One of the key input parameters for numerical pollen forecasts is the distribution of pollen sources. Generally, three different methodologies exist to assemble such distribution maps: (1) plant inventories, (2) land use data in combination with annual pollen counts, and (3) ecological modeling. We have used six exemplary maps for all of these methodologies to study their applicability and usefulness in numerical pollen forecasts. The ragweed pollen season of 2012 in France has been simulated with the numerical weather prediction model COSMO-ART using each of the distribution maps in turn. The simulated pollen concentrations were statistically compared to measured values to derive a ranking of the maps with respect to their performance. Overall, approach (2) resulted in the best correspondence between observed and simulated pollen concentrations for the year 2012. It is shown that maps resulting from ecological modeling that does not include a sophisticated estimation of the plant density have a very low predictive skill. For inventory maps and the maps based on land use data and pollen counts, the results depend very much on the observational site. The use of pollen counts to calibrate the map enhances the performance of the model considerably.

  3. Comparison of 1:1 and 1:m CSCL Environment for Collaborative Concept Mapping

    ERIC Educational Resources Information Center

    Lin, C.-P.; Wong, L.-H.; Shao, Y.-J.

    2012-01-01

    This paper reports an investigation into the effects of collaborative concept mapping in a digital learning environment, in terms of students' overall learning gains, knowledge retention, quality of student artefacts (the collaboratively created concept maps), interactive patterns, and learning perceptions. Sixty-four 12-year-old students from two…

  4. Analysing Concept Maps as an Assessment Tool in Teaching Physics and Comparison with the Achievement Tests

    ERIC Educational Resources Information Center

    Ingec, Sebnem Kandil

    2009-01-01

    Concept mapping is a technique that paves the way to represent knowledge schematically. In this research, concept mapping was used as an assessment method on the impulse-momentum topic. The purpose of this study was to determine teacher candidates' knowledge about understanding of the concepts of impulse and momentum by comparing and contrasting…

  5. Comparison of Ground-Based 3-Dimensional Lightning Mapping Observations with Satellite-Based LIS Observations in Oklahoma: Comparison of LMS and LIS Lightning Mapping

    NASA Technical Reports Server (NTRS)

    Thomas, Ronald J.; Krehbiel, Paul R.; Rison, William; Hamlin, Timothy; Boccippio, Dennis J.; Goodman, Steven J.; Christian, Hugh J.

    1999-01-01

    3-dimensional lightning mapping observations obtained during the MEaPRS program in central Oklahoma during June, 1998 have been compared with observations of the discharges from space, obtained by NASA's Lightning Imaging Sensor (LIS) on the TRMM satellite. Excellent spatial and temporal correlations were observed between the two sets of observations. Most of the detected optical events were associated with intracloud discharges that developed into the upper part of the storm. Cloud-to-ground discharges that were confined to mid- and lower-altitudes tended not to be detected by LIS. Extensive illumination tended to occur in impulsive bursts toward the end or part way through intracloud flashes and appeared to be produced by energetic K-changes that typically occur at these times.

  6. Uncertainty in the spatial distribution of tropical forest biomass: a comparison of pan-tropical maps

    PubMed Central

    2013-01-01

    Background Mapping the aboveground biomass of tropical forests is essential both for implementing conservation policy and reducing uncertainties in the global carbon cycle. Two medium resolution (500 m – 1000 m) pantropical maps of vegetation biomass have been recently published, and have been widely used by sub-national and national-level activities in relation to Reducing Emissions from Deforestation and forest Degradation (REDD+). Both maps use similar input data layers, and are driven by the same spaceborne LiDAR dataset providing systematic forest height and canopy structure estimates, but use different ground datasets for calibration and different spatial modelling methodologies. Here, we compare these two maps to each other, to the FAO’s Forest Resource Assessment (FRA) 2010 country-level data, and to a high resolution (100 m) biomass map generated for a portion of the Colombian Amazon. Results We find substantial differences between the two maps, in particular in central Amazonia, the Congo basin, the south of Papua New Guinea, the Miombo woodlands of Africa, and the dry forests and savannas of South America. There is little consistency in the direction of the difference. However, when the maps are aggregated to the country or biome scale there is greater agreement, with differences cancelling out to a certain extent. When comparing country level biomass stocks, the two maps agree with each other to a much greater extent than to the FRA 2010 estimates. In the Colombian Amazon, both pantropical maps estimate higher biomass than the independent high resolution map, but show a similar spatial distribution of this biomass. Conclusions Biomass mapping has progressed enormously over the past decade, to the stage where we can produce globally consistent maps of aboveground biomass. We show that there are still large uncertainties in these maps, in particular in areas with little field data. However, when used at a regional scale, different maps appear to

  7. Vanadium removal from LD converter slag using bacteria and fungi.

    PubMed

    Mirazimi, S M J; Abbasalipour, Z; Rashchi, F

    2015-04-15

    Removal of vanadium from Linz-Donawits (LD) converter slag was investigated by means of three different species of microbial systems: Acidithiobacillus thiooxidans (autotrophic bacteria), Pseudomonas putida (heterotrophic bacteria) and Aspergillus niger (fungi). The bioleaching process was carried out in both one-step and two-step process and the leaching efficiencies in both cases were compared. Formation of inorganic and organic acids during the leaching process caused mobilization of vanadium. In order to reduce toxic effects of the metal species on the above mentioned microorganisms, a prolonged adaptation process was performed. Both bacteria, A. thiooxidans and P. putida were able to remove more than 90% of vanadium at slag concentrations of 1-5 g L(-1) after 15 days. Also, the maximum achievable vanadium removal in the fungal system was approximately 92% at a slag concentration of 1 g L(-1) after 22 days. PMID:25697901

  8. Comparison of manually produced and automated cross country movement maps using digital image processing techniques

    NASA Technical Reports Server (NTRS)

    Wynn, L. K.

    1985-01-01

    The Image-Based Information System (IBIS) was used to automate the cross country movement (CCM) mapping model developed by the Defense Mapping Agency (DMA). Existing terrain factor overlays and a CCM map, produced by DMA for the Fort Lewis, Washington area, were digitized and reformatted into geometrically registered images. Terrain factor data from Slope, Soils, and Vegetation overlays were entered into IBIS, and were then combined utilizing IBIS-programmed equations to implement the DMA CCM model. The resulting IBIS-generated CCM map was then compared with the digitized manually produced map to test similarity. The numbers of pixels comprising each CCM region were compared between the two map images, and percent agreement between each two regional counts was computed. The mean percent agreement equalled 86.21%, with an areally weighted standard deviation of 11.11%. Calculation of Pearson's correlation coefficient yielded +9.997. In some cases, the IBIS-calculated map code differed from the DMA codes: analysis revealed that IBIS had calculated the codes correctly. These highly positive results demonstrate the power and accuracy of IBIS in automating models which synthesize a variety of thematic geographic data.

  9. Comparison between historical yield and soybean crop EVI values using correlation map

    NASA Astrophysics Data System (ADS)

    Figueiredo, G. K.; Rocha, J. V.; Lamparelli, R. A.; Brunsell, N. A.

    2012-12-01

    Timely and accurate yield estimates using remote sensing represents an important advance towards objective crop forecasting in Brazil. Vegetation index values integrated over a period have been used to generate agronomic parameters such as crop yield. Several studies showed the strong relationship between accumulated vegetation index and historical yield, once it represents crop photosynthetic activity. The main goal of this study was to create correlation maps between Modis/TERRA EVI and historical yield during the soybean crop cycle in Paraná state, Brazil, from 2000 to 2010. The soybean cycle was separated in four variables corresponding to the crop stage: emergence to maturity, emergence to flowering, flowering to maturity, flowering to the grain filling. For each variable a correlation map was created between the accumulated EVI and soybean yield at pixel level. All variables showed a good correlation, but among all of them the best correlation was the period between flowering to maturity. This happened because of exclusion of months where EVI response was low, corresponding to period of crop emergence (October and November). A percentage map of soybean crop was confronted with the correlation map to check out whether the highest correlation was corresponding to soybean pixel. On the percentage map pixels showing above 70% of soybean were selected, then on the correlation map pixels with correlation coefficients above 0.7 were selected. Within the data set 43% of pixels from the correlation map had land cover greater than or equal to 70% of soybean crop.

  10. Fractal mapping of digitized images - Application to the topography of Arizona and comparisons with synthetic images

    NASA Technical Reports Server (NTRS)

    Huang, J.; Turcotte, D. L.

    1989-01-01

    The concept of fractal mapping is introduced and applied to digitized topography of Arizona. It is shown that the fractal statistics satisfy the topography of the state to a good approximation. The fractal dimensions and roughness amplitudes from subregions are used to construct maps of these quantities. It is found that the fractal dimension of actual two-dimensional topography is not affected by the adding unity to the fractal dimension of one-dimensional topographic tracks. In addition, consideration is given to the production of fractal maps from synthetically derived topography.

  11. Comparison of User-Directed and Automatic Mapping of the Planned Isocenter to Treatment Space for Prostate IGRT

    PubMed Central

    Wang, Andrew; Kress, Andrea; Qin, An; Cullip, Timothy; Tracton, Gregg; Yan, Di; Chaney, Edward

    2013-01-01

    Image-guided radiotherapy (IGRT), adaptive radiotherapy (ART), and online reoptimization rely on accurate mapping of the radiation beam isocenter(s) from planning to treatment space. This mapping involves rigid and/or nonrigid registration of planning (pCT) and intratreatment (tCT) CT images. The purpose of this study was to retrospectively compare a fully automatic approach, including a non-rigid step, against a user-directed rigid method implemented in a clinical IGRT protocol for prostate cancer. Isocenters resulting from automatic and clinical mappings were compared to reference isocenters carefully determined in each tCT. Comparison was based on displacements from the reference isocenters and prostate dose-volume histograms (DVHs). Ten patients with a total of 243 tCTs were investigated. Fully automatic registration was found to be as accurate as the clinical protocol but more precise for all patients. The average of the unsigned x, y, and z offsets and the standard deviations (σ) of the signed offsets computed over all images were (avg. ±  σ (mm)): 1.1 ± 1.4, 1.8 ± 2.3, 2.5 ± 3.5 for the clinical protocol and 0.6 ± 0.8, 1.1 ± 1.5 and 1.1 ± 1.4 for the automatic method. No failures or outliers from automatic mapping were observed, while 8 outliers occurred for the clinical protocol. PMID:24348526

  12. Identification of Ischemic Lesions Based on Difference Integral Maps, Comparison of Several ECG Intervals

    NASA Astrophysics Data System (ADS)

    Švehlíková, J.; Kania, M.; Turzová, M.; Hebláková, E.; Tyšler, M.; Maniewski, R.

    2009-01-01

    Ischemic changes in small areas of myocardium can be detected from difference integral maps computed from body surface potentials measured on the same subject in situations with and without manifestation of ischemia. The proposed method for their detection is the inverse solution with 2 dipoles. Surface potentials were recorded at rest and during stress on 10 patients and 3 healthy subjects. Difference integral maps were computed for 4 intervals of integration of electrocardiographic signal (QRST, QRSU, STT and STU) and their properties and applicability as input data for inverse identification of ischemic lesions were compared. The results showed that better (more reliable) inverse solutions can be obtained from difference integral maps computed either from QRST or from STT interval of integration. The average correlation between these maps was 97%. The use of the end of U wave instead of the end of T wave for interval of integration did not improve the results.

  13. Comparison of Sub-pixel Classification Approaches for Crop-specific Mapping

    EPA Science Inventory

    The Moderate Resolution Imaging Spectroradiometer (MODIS) data has been increasingly used for crop mapping and other agricultural applications. Phenology-based classification approaches using the NDVI (Normalized Difference Vegetation Index) 16-day composite (250 m) data product...

  14. Comparisons of four approximation algorithms for large-scale linkage map construction

    PubMed Central

    Jenkins, Johnie N.; McCarty, Jack C.; Lou, Xiang-Yang

    2011-01-01

    Efficient construction of large-scale linkage maps is highly desired in current gene mapping projects. To evaluate the performance of available approaches in the literature, four published methods, the insertion (IN), seriation (SER), neighbor mapping (NM), and unidirectional growth (UG) were compared on the basis of simulated F2 data with various population sizes, interferences, missing genotype rates, and mis-genotyping rates. Simulation results showed that the IN method outperformed, or at least was comparable to, the other three methods. These algorithms were also applied to a real data set and results showed that the linkage order obtained by the IN algorithm was superior to the other methods. Thus, this study suggests that the IN method should be used when constructing large-scale linkage maps. PMID:21611760

  15. Face recognition using 3D facial shape and color map information: comparison and combination

    NASA Astrophysics Data System (ADS)

    Godil, Afzal; Ressler, Sandy; Grother, Patrick

    2004-08-01

    In this paper, we investigate the use of 3D surface geometry for face recognition and compare it to one based on color map information. The 3D surface and color map data are from the CAESAR anthropometric database. We find that the recognition performance is not very different between 3D surface and color map information using a principal component analysis algorithm. We also discuss the different techniques for the combination of the 3D surface and color map information for multi-modal recognition by using different fusion approaches and show that there is significant improvement in results. The effectiveness of various techniques is compared and evaluated on a dataset with 200 subjects in two different positions.

  16. Comparison of Mapping Tessera Terrain in the Phoebe Regio (V-41) and Tellus Tessera (V-10) Quadrangles

    NASA Technical Reports Server (NTRS)

    Senske, D. A.

    2010-01-01

    Tessera terrain was first described from data collected by the Venera 15/16 spacecraft. These high standing crustal plateaus are characterized by enhanced radar-scale roughness (i.e. at the 12-cm Magellan radar wavelength), low radar reflectivity and multiple episodes of deformation. Outcrops range from local exposures (100s of km across) to continent sized (e.g. Aphrodite Terra). To understand the tectonic history of these relatively old terrains, detailed geologic and stratigraphic relations have been assessed by a number of investigators. Tessera is typically mapped as a global-scale unit although significant variations in both geologic setting and character are observed. This leads to the suggestion that the rock material making up these terrains may vary across the planet. As such, we are carrying out geologic mapping of both the Phoebe Regio (V-41) and Tellus Tessera (V-10) quadrangles to ascertain their geologic history and make comparisons between these distinct upland plateaus.

  17. Comparison of four Vulnerability Approaches to Mapping of Shallow Aquifers of Eastern Dahomey Basin of Nigeria

    NASA Astrophysics Data System (ADS)

    Oke, Saheed; Vermeulen, Danie

    2016-04-01

    This study presents the outcome of mapping the shallow aquifers of the eastern Dahomey Basin of southwestern Nigeria vulnerability studies. The basin is a coastal transboundary aquifer extending from eastern Ghana to southwestern Nigeria. The study aimed to examine the most suitable method for mapping the basin shallow aquifers by comparing the results of four different vulnerability approaches. This is most important due to differences in vulnerability assessment parameters, approaches and results derived from most vulnerability methods on a particular aquifer. The methodology involves using vulnerability techniques that assess the intrinsic properties of the aquifer. Two methods from travel time approach (AVI and RTt) and index approach (DRASTIC and PI) were employed in the mapping of the basin. The results show the AVI has the least mapping parameters with 75% of the basin classified as very high vulnerability and 25% with high vulnerability. The DRASTIC mapping shows 18% as low vulnerability, 61% as moderate vulnerability and 21% reveal high vulnerability. Mapping with the PI method which has highest parameters shows 66% of the aquifer as low vulnerability and 34% reveal moderate vulnerability. The RTt method shows 18% as very high vulnerability, 8% as high vulnerability, 64% as moderate vulnerability and 10% reveal very low vulnerability. Further analysis involving correlation plots shows the highest correlation of 62% between the RTt and DRASTIC method than within any others methods. The analysis shows that the PI method is the mildest of all the vulnerability methods while the AVI method is the strictest of the methods considered in this vulnerability mapping. The significance of using four different approaches to the mapping of the shallow aquifers of the eastern Dahomey Basin will guide in the recommendation of the best vulnerability method for subsequent future assessment of this and other shallow aquifers. Keywords: Aquifer vulnerability, Dahomey Basin

  18. A comparison of two algorithms for electron-density map improvement by introduction of atomicity: skeletonization, and map sorting followed by refinement.

    PubMed

    Vellieux, F M

    1998-01-01

    A comparison has been made of two methods for electron-density map improvement by the introduction of atomicity, namely the iterative skeletonization procedure of the CCP4 program DM [Cowtan & Main (1993). Acta Cryst. D49, 148-157] and the pseudo-atom introduction followed by the refinement protocol in the program suite DEMON/ANGEL [Vellieux, Hunt, Roy & Read (1995). J. Appl. Cryst. 28, 347-351]. Tests carried out using the 3.0 A resolution electron density resulting from iterative 12-fold non-crystallographic symmetry averaging and solvent flattening for the Pseudomonas aeruginosa ornithine transcarbamoylase [Villeret, Tricot, Stalon & Dideberg (1995). Proc. Natl Acad. Sci. USA, 92, 10762-10766] indicate that pseudo-atom introduction followed by refinement performs much better than iterative skeletonization: with the former method, a phase improvement of 15.3 degrees is obtained with respect to the initial density modification phases. With iterative skeletonization a phase degradation of 0.4 degrees is obtained. Consequently, the electron-density maps obtained using pseudo-atom phases or pseudo-atom phases combined with density-modification phases are much easier to interpret. These tests also show that for ornithine transcarbamoylase, where 12-fold non-crystallographic symmetry is present in the P1 crystals, G-function coupling leads to the simultaneous decrease of the conventional R factor and of the free R factor, a phenomenon which is not observed when non-crystallographic symmetry is absent from the crystal. The method is far less effective in such a case, and the results obtained suggest that the map sorting followed by refinement stage should be by-passed to obtain interpretable electron-density distributions. PMID:9761819

  19. Levodropropizine (LD) activity in allergic asthmatic patients, challenged with ultrasonically nebulized distilled water, metacholine and allergen-induced bronchospasm.

    PubMed

    Bossi, R; Banfi, P; Filipazzi, V; Castelli, C; Braga, P C

    1994-04-01

    The antitussive compound Levodropropizine (LD) is active in animal bronchoconstriction induced by histamine and capsaicin and in man protects from bronchoconstriction induced by capsaicin. The primary objective of this study was to evaluate the mechanism of action of LD given at 60 mg t.i.d. as oral drops, for 8 days by means of specific bronchial challenges (allergens) and of aspecific challenges acting via different receptors and fibers (i.e. metacholine via cholinergic receptors and ultrasonically nebulized distilled water (UNDW) via histamine and neuropeptide release). The study design is randomized, double-blind, cross-over versus placebo in 30 allergic asthmatic patients. Baseline bronchial tone and bronchoconstrictor response to metacholine (MCh) were not modified by active treatment nor by placebo. On the contrary, in airway responsiveness to UNDW, the active treatment showed an antagonist effect against induced bronchoconstriction of 59% [activity ratio (AR) as antilog = 0.41; 95% confidence interval 0.35-0.54; p < or = 0.05] in comparison to no effect for placebo. Similarly, in airway responsiveness to specific allergen, active treatment antagonized the bronchoconstrictor effect of grass pollen by 83% and of various allergens (dermatophagoides and grass pollen) by 72%, i.e. AR of 0.17 (95% confidence interval 0.045-0.65; p < 0.01) and of 0.28 (95% confidence interval 0.07-1.04; p < 0.05), respectively. No antagonist effect was evident with placebo at all times. Besides inhibiting cough, LD is also partially effective in inhibiting bronchial hyperreactive response against specific allergen and UNDW bronchoconstriction. Hence, LD might act by partly inhibiting histamine and neuropeptide release. PMID:10184318

  20. Single-molecule approach to bacterial genomic comparisons via optical mapping.

    SciTech Connect

    Zhou, Shiguo; Kile, A.; Bechner, M.; Kvikstad, E.; Deng, W.; Wei, J.; Severin, J.; Runnheim, R.; Churas, C.; Forrest, D.; Dimalanta, E.; Lamers, C.; Burland, V.; Blattner, F. R.; Schwartz, David C.

    2004-01-01

    Modern comparative genomics has been established, in part, by the sequencing and annotation of a broad range of microbial species. To gain further insights, new sequencing efforts are now dealing with the variety of strains or isolates that gives a species definition and range; however, this number vastly outstrips our ability to sequence them. Given the availability of a large number of microbial species, new whole genome approaches must be developed to fully leverage this information at the level of strain diversity that maximize discovery. Here, we describe how optical mapping, a single-molecule system, was used to identify and annotate chromosomal alterations between bacterial strains represented by several species. Since whole-genome optical maps are ordered restriction maps, sequenced strains of Shigella flexneri serotype 2a (2457T and 301), Yersinia pestis (CO 92 and KIM), and Escherichia coli were aligned as maps to identify regions of homology and to further characterize them as possible insertions, deletions, inversions, or translocations. Importantly, an unsequenced Shigella flexneri strain (serotype Y strain AMC[328Y]) was optically mapped and aligned with two sequenced ones to reveal one novel locus implicated in serotype conversion and several other loci containing insertion sequence elements or phage-related gene insertions. Our results suggest that genomic rearrangements and chromosomal breakpoints are readily identified and annotated against a prototypic sequenced strain by using the tools of optical mapping.

  1. Mapping and monitoring carbon stocks with satellite observations: a comparison of methods

    PubMed Central

    Goetz, Scott J; Baccini, Alessandro; Laporte, Nadine T; Johns, Tracy; Walker, Wayne; Kellndorfer, Josef; Houghton, Richard A; Sun, Mindy

    2009-01-01

    Mapping and monitoring carbon stocks in forested regions of the world, particularly the tropics, has attracted a great deal of attention in recent years as deforestation and forest degradation account for up to 30% of anthropogenic carbon emissions, and are now included in climate change negotiations. We review the potential for satellites to measure carbon stocks, specifically aboveground biomass (AGB), and provide an overview of a range of approaches that have been developed and used to map AGB across a diverse set of conditions and geographic areas. We provide a summary of types of remote sensing measurements relevant to mapping AGB, and assess the relative merits and limitations of each. We then provide an overview of traditional techniques of mapping AGB based on ascribing field measurements to vegetation or land cover type classes, and describe the merits and limitations of those relative to recent data mining algorithms used in the context of an approach based on direct utilization of remote sensing measurements, whether optical or lidar reflectance, or radar backscatter. We conclude that while satellite remote sensing has often been discounted as inadequate for the task, attempts to map AGB without satellite imagery are insufficient. Moreover, the direct remote sensing approach provided more coherent maps of AGB relative to traditional approaches. We demonstrate this with a case study focused on continental Africa and discuss the work in the context of reducing uncertainty for carbon monitoring and markets. PMID:19320965

  2. Molecular characterization and LD(50) identify virulent isolates of Staphylococcus epidermidis from adult sepsis.

    PubMed

    Herndona, B L; Bialkowska-Hobrzanska, H; Dall, L

    2000-02-01

    Staphylococcus epidermidis plays an important role in infections of patients with implanted prosthetic devices. The exact clinical significance of recovered S. epidermidis from clinical specimens is difficult to assess, as they are inhabitants of the normal skin. In this study, 11 adults with clinical sepsis and blood cultures that grew only S. epidermidis were the host population. Bacterial virulence in vivo was determined by using the mouse LD(50) assay where the intravenous lethality was determined for each patient isolate. Bacterial dose (CFU x 10(9)) that produced lethality in 50% of the animals at 12 h was the value used for comparison. Restriction fragment length polymorphism (RFLP) analysis of chromosomal DNA by pulsed-field gel electrophoresis (PFGE) was used for identification of individual strains and their clonal organization. Confirmation of species assignment was done by RFLP analysis of 16S + 23S rRNA gene regions (ribotyping). Plasmid profile analysis was also conducted. Four of 11 blood isolates from adults with S. epidermidis sepsis had indistinguishable or closely related DNA patterns and were considered clone A. The same clone was previously seen to account for the majority of sepsis in a neonatal intensive care unit. There were significant differences in virulence characteristics of the S. epidermidis isolates. Clone A isolates produced lethality by LD(50) in mice at a dose averaging 2.35; clone B isolate at a dose of 2.54, and the remaining isolates, representing six distinct clones, were lethal to mice at significantly larger doses (3.51-5.17, average 4.16). These data suggest that individual clones of S. epidermidis isolated from septic adults have detectable differences in virulence as defined by an animal bioassay, and the more virulent clone is widespread. PMID:10705046

  3. Comparison of Synoptic Maps of Solar Soft X-Ray Features, Photospheric Magnetic Fields, and Helium 1083 NM

    NASA Astrophysics Data System (ADS)

    Harvey, J.; Slater, G.; Nitta, N.; Shibata, K.; Tsuneta, S.; Sakurai, T.; Hara, H.

    1994-12-01

    We studied the wealth of structural features visible in Yohkoh/SXT and NSO/KP synoptic maps of the Sun that cover Carrington rotations 1847 through 1879. In order to do this comparison, various methods to reduce soft X-ray maps to simple structural elements were explored. In the end, the best way of comparing the various data sets turned out to be to filter the X-ray maps to emphasize high-spatial frequencies and then to either simply blink the various images or to make colorized composite maps that distinctively assign different colors to various quantities. Among the results are: 1. Active regions exhibit normal or "anemone" (fountain-like) X-ray loop structure tendency depending on whether the surrounding large-scale unipolarity of the magnetic field is small or large. 2. There is a systematic twist of the coronal loops around magnetic concentrations in the southern hemisphere and vice-versa in the north. The sense is the same as one would expect from the action of differential rotation. 3. Dark lanes in the X-ray images are centered over large-scale polarity patterns of one sign or the other. 4. The X-ray loops at the boundaries between large-scale opposite polarity patterns are frequently strongly sheared. The presence or absence of a filament in these locations may be related in a complicated way to the amount of shear. 5. At the resolution of the synoptic maps, the footpoints of X-ray loops are almost always rooted in locally strong magnetic concentrations and also in extra-dark 1083 nm elements.

  4. Comparison of methods for integrating biological and physical data for marine habitat mapping and classification

    NASA Astrophysics Data System (ADS)

    Shumchenia, E. J.; King, J. W.

    2010-09-01

    An important first step in marine spatial planning and ecosystem-based management efforts is the creation of benthic habitat maps that allow scientists and managers to understand the distribution of living and non-living resources on the seafloor. However, the location of boundaries between and composition of habitats is highly dependent on the approach taken to integrate abiotic and biotic information. The purpose of this study was to test "top-down" and "bottom-up" approaches for integrating physical and biological data derived from commonly used sub-tidal benthic mapping tools to create a habitat map compatible with the US Coastal and Marine Ecological Classification Standard (CMECS). We found that a top-down framework, where we tested for differences in macrofauna assemblages among side scan sonar facies, defined two broad-scale and general habitats. Using the bottom-up approach, where patterns in abiotic and biotic variables were examined with multivariate statistics (BEST, LINKTREE, ANOSIM, SIMPER), we generated seven biotopes based on the macrofauna abundance, percent sand, water depth, and backscatter standard deviation that corresponded well to, but provided more fine-scale detail than the top-down habitats. We were able to use the statistical relationship between abiotic variables and macrofauna assemblages in the LINKTREE to predict the spatial distribution of assemblages over ˜50% of the study area. We created a local catalogue of biotopes specific to our study area that contributes to the CMECS library. In addition, we were able to fully map CMECS Geoform, Surface Geology, and Biotic Cover Components. This mapping effort represented real progress toward reconciling the "data density mismatch" between physical and biological mapping methods, and it provided further evidence that using a bottom-up methodology preserves species-environment relationships.

  5. Mapping of wheat mitochondrial mRNA termini and comparison with breakpoints in DNA homology among plants.

    PubMed

    Choi, Boyoung; Acero, Maria M; Bonen, Linda

    2012-11-01

    Mitochondrial DNA rearrangements occur very frequently in flowering plants and when close to genes there must be concomitant acquisition of new regulatory cis-elements. To explore whether there might be limits to such DNA shuffling, we have mapped the termini of mitochondrial mRNAs in wheat, a monocot, and compared them to the known positions for counterpart genes in the eudicot Arabidopsis. Nine genes share homologous 3' UTRs over their full-length and for six of them, the termini map very close to the site of wheat/Arabidopsis DNA rearrangements. Only one such case was seen for comparisons of 5' UTRs, and the 5' ends of mRNAs are typically more heterogeneous than 3' termini. Approximately half of the thirty-one wheat mitochondrial transcriptional units are preceded by CRTA promoter-like motifs, and of the potential stem-loop or tRNA-like structures identified as candidate RNA processing/stability signals near the 5' or 3' ends, several are shared with Arabidopsis. Comparison of the mitochondrial gene flanking sequences from normal fertile wheat (Triticum aestivum) with those of Aegilops kotschyi which is the source of mitochondria present in K-type cytoplasmic male sterile wheat, revealed six cases where mRNAs are precluded from sharing full-length homologous UTRs because of genomic reorganization events, and the presence of short repeats located at the sites of discontinuity points to a reciprocal recombination-mediated mode of rearrangement. PMID:22956245

  6. A COMPARISON OF MAPPED ESTIMATES OF LONG-TERM RUNOFF IN THE NORTHEAST UNITED STATES

    EPA Science Inventory

    We evaluated the relative accuracy of four methods of producing maps of long-term runoff for part of the northeast United States: MAN, a manual procedure that incorporates expert opinion in contour placement; RPRIS, an automated procedure based on water balance considerations, Pn...

  7. Comparison of QuickBird and SPOT 5 Satellite Imagery for Mapping Giant Reed

    Technology Transfer Automated Retrieval System (TEKTRAN)

    QuickBird (2.4 m resolution) and SPOT 5 (10 m resolution) multi-spectral satellite imagery were compared for mapping the invasive grass, giant reed (Arundo donax L.), along the Rio Grande in southwest Texas. The imagery had three bands (green, red, and near-infrared). Three subsets from both the Q...

  8. Disruption of the Lipid-Transporting LdMT-LdRos3 Complex in Leishmania donovani Affects Membrane Lipid Asymmetry but Not Host Cell Invasion

    PubMed Central

    Weingärtner, Adrien; Drobot, Björn; Herrmann, Andreas; Sánchez-Cañete, María P.; Gamarro, Francisco; Castanys, Santiago; Günther Pomorski, Thomas

    2010-01-01

    Maintenance and regulation of the asymmetric lipid distribution across eukaryotic plasma membranes is governed by the concerted action of specific membrane proteins controlling lipid movement across the bilayer. Here, we show that the miltefosine transporter (LdMT), a member of the P4-ATPase subfamily in Leishmania donovani, and the Cdc50-like protein LdRos3 form a stable complex that plays an essential role in maintaining phospholipid asymmetry in the parasite plasma membrane. Loss of either LdMT or LdRos3 abolishes ATP-dependent transport of NBD-labelled phosphatidylethanolamine (PE) and phosphatidylcholine from the outer to the inner plasma membrane leaflet and results in an increased cell surface exposure of endogenous PE. We also find that promastigotes of L. donovani lack any detectable amount of phosphatidylserine (PS) but retain their infectivity in THP-1-derived macrophages. Likewise, infectivity was unchanged for parasites without LdMT-LdRos3 complexes. We conclude that exposure of PS and PE to the exoplasmic leaflet is not crucial for the infectivity of L. donovani promastigotes. PMID:20865154

  9. GIT1 Paxillin-binding Domain Is a Four-helix Bundle, and It Binds to Both Paxillin LD2 and LD4 Motifs*S⃞

    PubMed Central

    Zhang, Ziwei M.; Simmerman, Joseph A.; Guibao, Cristina D.; Zheng, Jie J.

    2008-01-01

    The G protein-coupled receptor kinase-interacting protein 1 (GIT1) is a multidomain protein that plays an important role in cell adhesion, motility, cytoskeletal remodeling, and membrane trafficking. GIT1 mediates the localization of the p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions, and its activation is regulated by the interaction between its C-terminal paxillin-binding domain (PBD) and the LD motifs of paxillin. In this study, we determined the solution structure of rat GIT1 PBD by NMR spectroscopy. The PBD folds into a four-helix bundle, which is structurally similar to the focal adhesion targeting and vinculin tail domains. Previous studies showed that GIT1 interacts with paxillin through the LD4 motif. Here, we demonstrated that in addition to the LD4 motif, the GIT1 PBD can also bind to the paxillin LD2 motif, and both LD2 and LD4 motifs competitively target the same site on the PBD surface. We also revealed that paxillin Ser272 phosphorylation does not influence GIT1 PBD binding in vitro. These results are in agreement with the notion that phosphorylation of paxillin Ser272 plays an essential role in regulating focal adhesion turnover. PMID:18448431

  10. Disruption of the lipid-transporting LdMT-LdRos3 complex in Leishmania donovani affects membrane lipid asymmetry but not host cell invasion.

    PubMed

    Weingärtner, Adrien; Drobot, Björn; Herrmann, Andreas; Sánchez-Cañete, María P; Gamarro, Francisco; Castanys, Santiago; Günther Pomorski, Thomas

    2010-01-01

    Maintenance and regulation of the asymmetric lipid distribution across eukaryotic plasma membranes is governed by the concerted action of specific membrane proteins controlling lipid movement across the bilayer. Here, we show that the miltefosine transporter (LdMT), a member of the P4-ATPase subfamily in Leishmania donovani, and the Cdc50-like protein LdRos3 form a stable complex that plays an essential role in maintaining phospholipid asymmetry in the parasite plasma membrane. Loss of either LdMT or LdRos3 abolishes ATP-dependent transport of NBD-labelled phosphatidylethanolamine (PE) and phosphatidylcholine from the outer to the inner plasma membrane leaflet and results in an increased cell surface exposure of endogenous PE. We also find that promastigotes of L. donovani lack any detectable amount of phosphatidylserine (PS) but retain their infectivity in THP-1-derived macrophages. Likewise, infectivity was unchanged for parasites without LdMT-LdRos3 complexes. We conclude that exposure of PS and PE to the exoplasmic leaflet is not crucial for the infectivity of L. donovani promastigotes. PMID:20865154

  11. Comparison of wet/dry mapping and electrical resistivity sensors to characterize patterns of intermittency

    NASA Astrophysics Data System (ADS)

    Costigan, K. H.; Goss, C. W.; Jaeger, K. L.; Goebel, P. C.

    2015-12-01

    Intermittent rivers are those that cease to flow at some point(s) in space and time along their course and are present in all climates and terrestrial biomes. The prevalence of drying is increasing, even in temperate biomes that we typically do not associate with river drying or dry climates. There have been several techniques employed to characterize patterns of intermittency but field mapping and use of electrical resistivity (ER) sensors are the most common. Field mapping has long been used to study intermittency, but this method is limited by its inability to capture the rapidly changing configuration of intermittent streams that often occur during wetting and drying events. ER sensors enable researchers to remotely record channel-water presence at fine spatiotemporal scales which will better capture seasonal dynamics in transient lotic systems. Here, we compare field mapping and ER sensor recordings of stream intermittency for 10 forested headwater streams in northeastern Ohio. Field mapping occurred approximately biweekly while the ER sensors recorded at 30-minute intervals from April through November 2014. Although ER sensors offer many advantages to stream mapping, our study revealed several limitations of ER sensors including requiring re-securing after flows moved sensors, burial in sediment that results them in recording subsurface water, and the small spatial scale the sensors are representative of. Nevertheless, ER sensors provide a low cost, high performance, and method that requires minimal data interpretation to monitor the presence and absence of water in channels at a specific location. The latest generation of ER sensors also record temperature, which can help in differentiate standing and flowing water. Aspects other than timing, duration, and frequency of flow such as the resumption (advancing) and recession (retreating) rates or magnitudes can be characterized with ER sensor arrays.

  12. Whole-Genome Mapping as a Novel High-Resolution Typing Tool for Legionella pneumophila

    PubMed Central

    Euser, Sjoerd M.; Landman, Fabian; Bruin, Jacob P.; IJzerman, Ed P.; den Boer, Jeroen W.; Schouls, Leo M.

    2015-01-01

    Legionella is the causative agent for Legionnaires' disease (LD) and is responsible for several large outbreaks in the world. More than 90% of LD cases are caused by Legionella pneumophila, and studies on the origin and transmission routes of this pathogen rely on adequate molecular characterization of isolates. Current typing of L. pneumophila mainly depends on sequence-based typing (SBT). However, studies have shown that in some outbreak situations, SBT does not have sufficient discriminatory power to distinguish between related and nonrelated L. pneumophila isolates. In this study, we used a novel high-resolution typing technique, called whole-genome mapping (WGM), to differentiate between epidemiologically related and nonrelated L. pneumophila isolates. Assessment of the method by various validation experiments showed highly reproducible results, and WGM was able to confirm two well-documented Dutch L. pneumophila outbreaks. Comparison of whole-genome maps of the two outbreaks together with WGMs of epidemiologically nonrelated L. pneumophila isolates showed major differences between the maps, and WGM yielded a higher discriminatory power than SBT. In conclusion, WGM can be a valuable alternative to perform outbreak investigations of L. pneumophila in real time since the turnaround time from culture to comparison of the L. pneumophila maps is less than 24 h. PMID:26202110

  13. Comparison of parametric and nonparametric methods to map oligogenes by linkage

    PubMed Central

    Liò, P.; Morton, N. E.

    1997-01-01

    A sample of 95 sib pairs affected with insulin-dependent diabetes and typed with their normal parents for 28 markers on chromosome 6 has been analyzed by several methods. When appropriate parameters are efficiently estimated, a parametric model is equivalent to the β model, which is superior to nonparametric alternatives both in single point tests (as found previously) and in multipoint tests. Theory is given for meta-analysis combined with allelic association, and problems that may be associated with errors of map location and/or marker typing are identified. Reducing by multipoint analysis the number of association tests in a dense map can give a 3-fold reduction in the critical lod, and therefore in the cost of positional cloning. PMID:9144239

  14. Comparison of High Resolution Topographic Data Sources (SAR, IfSAR, and LiDAR) for Storm Surge Hazard Maps

    NASA Astrophysics Data System (ADS)

    Suarez, J. K. B.; Santiago, J. T.; Muldong, T. M. M.; Lagmay, A. M. A.; Caro, C. V.; Ramos, M.

    2014-12-01

    As an archipelagic country, the Philippines has experienced multiple storm surge threats. Moreover, the country's location, adjacent to the Pacific Ocean, results in an average of eight to nine typhoons that make landfall in a year. Storm surge hazard maps require high resolution topographic data to illustrate water inflow in the event of storm surges in vulnerable coastal areas and for accurate boundaries and coastline. Furthermore, potential hazard areas tend to be generalized in lower resolution data. The objective of this research is to compare three sources where accurate and quality storm surge hazard maps will draw bases from. For this purpose, the researcher used and compared SAR, IfSAR and LiDAR. The study involved comparing maps from different topographic data sources in Tacloban, in the province of Leyte. This area was one of the most heavily stricken areas during typhoon Haiyan where more than 6,000 people died and P34.37 billion worth of property was destroyed. In the comparison of the three sources, the following had be taken into consideration: cost of acquiring data, processing time, purpose, and the results. The research learned the following: Synthetic Aperture Radar or SAR produces data with a 30 meter resolution, while Interferometric Synthetic Aperture Radar (IfSAR) offers a resolution of 5 meters. Light Detection and Ranging (LiDAR) has the highest resolution of the three with 1 meter. In addition, higher costs are paid for more detailed topographic data. Also, processing time takes longer for finer details due to the memory of the computer units used for modelling. The sources were also evaluated on the necessity of the scale at which the maps are needed for specific purposes such as practicality and direct disaster response. Results from the maps have been validated through interviews with the locals on the experience of actual storm surges. Through this study, the researcher concluded that although LiDAR can offer a more detailed and

  15. Comparison of canine parvovirus with mink enteritis virus by restriction site mapping.

    PubMed Central

    McMaster, G K; Tratschin, J D; Siegl, G

    1981-01-01

    The genomes of canine parvovirus and mink enteritis virus were compared by restriction enzyme analysis of their replicative-form DNAs. Of 79 mapped sites, 68, or 86%, were found to be common for both types of DNA, indicating that canine parvovirus and mink enteritis virus are closely related viruses. Whether they evolved from a common precursor or whether canine parvovirus is derived from mink enteritis virus, however, cannot be deduced from our present data. Images PMID:6264109

  16. Performance comparison of LUR and OK in PM2.5 concentration mapping: a multidimensional perspective

    NASA Astrophysics Data System (ADS)

    Zou, Bin; Luo, Yanqing; Wan, Neng; Zheng, Zhong; Sternberg, Troy; Liao, Yilan

    2015-03-01

    Methods of Land Use Regression (LUR) modeling and Ordinary Kriging (OK) interpolation have been widely used to offset the shortcomings of PM2.5 data observed at sparse monitoring sites. However, traditional point-based performance evaluation strategy for these methods remains stagnant, which could cause unreasonable mapping results. To address this challenge, this study employs `information entropy', an area-based statistic, along with traditional point-based statistics (e.g. error rate, RMSE) to evaluate the performance of LUR model and OK interpolation in mapping PM2.5 concentrations in Houston from a multidimensional perspective. The point-based validation reveals significant differences between LUR and OK at different test sites despite the similar end-result accuracy (e.g. error rate 6.13% vs. 7.01%). Meanwhile, the area-based validation demonstrates that the PM2.5 concentrations simulated by the LUR model exhibits more detailed variations than those interpolated by the OK method (i.e. information entropy, 7.79 vs. 3.63). Results suggest that LUR modeling could better refine the spatial distribution scenario of PM2.5 concentrations compared to OK interpolation. The significance of this study primarily lies in promoting the integration of point- and area-based statistics for model performance evaluation in air pollution mapping.

  17. Comparison of Image Restoration Methods for Lunar Epithermal Neutron Emission Mapping

    NASA Technical Reports Server (NTRS)

    McClanahan, T. P.; Ivatury, V.; Milikh, G.; Nandikotkur, G.; Puetter, R. C.; Sagdeev, R. Z.; Usikov, D.; Mitrofanov, I. G.

    2009-01-01

    Orbital measurements of neutrons by the Lunar Exploring Neutron Detector (LEND) onboard the Lunar Reconnaissance Orbiter are being used to quantify the spatial distribution of near surface hydrogen (H). Inferred H concentration maps have low signal-to-noise (SN) and image restoration (IR) techniques are being studied to enhance results. A single-blind. two-phase study is described in which four teams of researchers independently developed image restoration techniques optimized for LEND data. Synthetic lunar epithermal neutron emission maps were derived from LEND simulations. These data were used as ground truth to determine the relative quantitative performance of the IR methods vs. a default denoising (smoothing) technique. We review and used factors influencing orbital remote sensing of neutrons emitted from the lunar surface to develop a database of synthetic "true" maps for performance evaluation. A prior independent training phase was implemented for each technique to assure methods were optimized before the blind trial. Method performance was determined using several regional root-mean-square error metrics specific to epithermal signals of interest. Results indicate unbiased IR methods realize only small signal gains in most of the tested metrics. This suggests other physically based modeling assumptions are required to produce appreciable signal gains in similar low SN IR applications.

  18. Performance comparison of LUR and OK in PM2.5 concentration mapping: a multidimensional perspective

    PubMed Central

    Zou, Bin; Luo, Yanqing; Wan, Neng; Zheng, Zhong; Sternberg, Troy; Liao, Yilan

    2015-01-01

    Methods of Land Use Regression (LUR) modeling and Ordinary Kriging (OK) interpolation have been widely used to offset the shortcomings of PM2.5 data observed at sparse monitoring sites. However, traditional point-based performance evaluation strategy for these methods remains stagnant, which could cause unreasonable mapping results. To address this challenge, this study employs ‘information entropy’, an area-based statistic, along with traditional point-based statistics (e.g. error rate, RMSE) to evaluate the performance of LUR model and OK interpolation in mapping PM2.5 concentrations in Houston from a multidimensional perspective. The point-based validation reveals significant differences between LUR and OK at different test sites despite the similar end-result accuracy (e.g. error rate 6.13% vs. 7.01%). Meanwhile, the area-based validation demonstrates that the PM2.5 concentrations simulated by the LUR model exhibits more detailed variations than those interpolated by the OK method (i.e. information entropy, 7.79 vs. 3.63). Results suggest that LUR modeling could better refine the spatial distribution scenario of PM2.5 concentrations compared to OK interpolation. The significance of this study primarily lies in promoting the integration of point- and area-based statistics for model performance evaluation in air pollution mapping. PMID:25731103

  19. Comparison results of forest cover mapping of Peninsular Malaysia using geospatial technology

    NASA Astrophysics Data System (ADS)

    Hamid, Wan Abdul; Abd Rahman, Shukri B. Wan

    2016-06-01

    Climate change and global warming transpire due to several factors. Among them is deforestation which occur mostly in developing countries including Malaysia where forested areas are converted to other land use for tangible economic returns and to a smaller extent, as subsistence for local communities. As a cause for concern, efforts have been taken by the World Resource Institute (WRI) and World Wildlife Fund (WWF) to monitor forest loss using geospatial technology - interpreting time-based remote sensing imageries and producing statistics of forested areas lost since 2001. In Peninsular Malaysia, the Forestry Department of Peninsular Malaysia(FDPM) has conducted forest cover mapping for the region using the same technology since 2011, producing GIS maps for 2009-2010,2011-2012,2013-2014 and 2015. This paper focuses on the comparative study of the results generated from WRI,WWF and FDPM interpretations between 2010 and 2015, the methodologies used, the similarities and differences, challenges and recommendations for future enhancement of forest cover mapping technique.

  20. Analyzing Large-Scale Structural Change in Proteins: Comparison of Principal Component Projection and Sammon Mapping

    SciTech Connect

    Mesentean, Sidonia; Fischer, S.; Smith, Jeremy C

    2006-04-01

    Effective analysis of large-scale conformational transitions in macromolecules requires transforming them into a lower dimensional representation that captures the dominant motions. Herein, we apply and compare two different dimensionality reduction techniques, namely, principal component analysis (PCA), a linear method, and Sammon mapping, which is nonlinear. The two methods are used to analyze four different protein transition pathways of varying complexity, obtained by using either the conjugate peak refinement method or constrained molecular dynamics. For the return-stroke in myosin, both Sammon mapping and PCA show that the conformational change is dominated by a simple rotation of a rigid body. Also, in the case of the T{yields}R transition in hemoglobin, both methods are able to identify the two main quaternary transition events. In contrast, in the cases of the unfolding transition of staphylococcal nuclease or the signaling switch of Ras p21, which are both more complex conformational transitions, only Sammon mapping is able to identify the distinct phases of motion.

  1. Trace element mapping of pyrite from Archean gold deposits - A comparison between PIXE and EPMA

    NASA Astrophysics Data System (ADS)

    Agangi, A.; Przybyłowicz, W.; Hofmann, A.

    2015-04-01

    Chemical zoning of pyrites can record the evolution of mineralising fluids at widely varying P-T conditions ranging from diagenesis to medium-grade metamorphism. If preserved, zoning can reveal growth textures, brecciation and veining, resorption and recrystallisation events, thus shedding light on the processes that contributed to ore formation. Chemical zoning of sulfides is invisible in optical microscopy, but can be studied by chemical etching, high-contrast back-scattering electron images, and elemental imaging. In this study we compared micro-PIXE and WDS-EPMA elemental maps on the chemically zoned pyrites in mineralised vein-bearing samples from the Sheba and Fairview gold mines in the Barberton Greenstone Belt, South Africa. Elemental images show complex distribution of trace elements, suggesting multiple events of pyrite crystallisation and gold deposition. EPMA maps show fine-scale variations reflecting growth and recrystallisation textures marked, in particular, by variations of As, Ni, and Co. In PIXE maps, gold occurs both as finely-distributed and discrete inclusions, suggesting incorporation in the pyrite structure as solid solution, and deposition as electrum inclusions, respectively. Micro-PIXE and EPMA provide complementary information, forming together a powerful tool to obtain information on chemical zoning of pyrites in ore deposits.

  2. The Relation of LD and Gender with Emotional Intelligence in College Students.

    ERIC Educational Resources Information Center

    Reiff, Henry B.; Hatzes, Nanette M.; Bramel, Michael H.; Gibbon, Thomas

    2001-01-01

    This study examined the relation of learning disabilities (LD) and gender with emotional intelligence (as measured by the Emotional Quotient Inventory) in 128 college students. Analyses indicated significant differences between students with and without LD on stress management and adaptability, between men and women students on interpersonal…

  3. Discriminative Effectiveness of the Luria-Nebraska Neuropsychological Battery for LD Adolescents.

    ERIC Educational Resources Information Center

    Lewis, Richard D.; Lorion, Raymond P.

    1988-01-01

    Evaluation of the Luria-Nebraska Neuropsychological Battery's utility in distinguishing between 30 male adolescents diagnosed as learning disabled (LD) and 30 matched non-LD students indicated that the battery correctly classified 90 percent of the sample with 6.7 percent false positives and 13.3 percent false negatives. (Author/DB)

  4. Psychometric Approaches to the Identification of LD: IQ and Achievement Scores Are Not Sufficient

    ERIC Educational Resources Information Center

    Francis,David J; Fletcher,Jack M.; Stuebing,Karla K.; Lyon,G. Reid; Shaywitz,Bennett A; Shaywitz,Sally E.

    2005-01-01

    Simulated data were used to demonstrate that groups formed by imposing cut-points based on either discrepancy or low-achievement definitions of learning disabilities (LD) are unstable over time. Similar problems were demonstrated in longitudinal data from the Connecticut Longitudinal Study, where 39% of the children designated as having LD in…

  5. Effects of Low-Dose Mindfulness-Based Stress Reduction (MBSR-ld) on Working Adults

    ERIC Educational Resources Information Center

    Klatt, Maryanna D.; Buckworth, Janet; Malarkey, William B.

    2009-01-01

    Mindfulness-based stress reduction (MBSR) has produced behavioral, psychological, and physiological benefits, but these programs typically require a substantial time commitment from the participants. This study assessed the effects of a shortened (low-dose [ld]) work-site MBSR intervention (MBSR-ld) on indicators of stress in healthy working…

  6. Refining Diagnoses: Applying the DC-LD to an Irish Population with Intellectual Disability

    ERIC Educational Resources Information Center

    Felstrom, A.; Mulryan, N.; Reidy, J.; Staines, M.; Hillery, J.

    2005-01-01

    Background: The diagnostic criteria for psychiatric disorders for use with adults with learning disabilities/mental retardation (DC-LD) is a diagnostic tool developed in 2001 to improve upon existing classification systems for adults with learning disability. The aim of this study was to apply the classification system described by the DC-LD to a…

  7. Strengths-based Assessment Differences across Students with LD and EBD.

    ERIC Educational Resources Information Center

    Reid, Robert; Epstein, Michael H.; Pastor, Dena A.; Ryser, Gail R.

    2000-01-01

    A study used the Behavioral and Emotional Rating Scale (BERS) with 129 students (ages 7-18) with learning disabilities (LD), 145 with emotional and behavioral disorders (EBD), and 144 typical students. BERS discriminated among students with LD and EBD and controls and was able to classify students with EBD and controls. (Contains references.)…

  8. Ten Years of Research: A Systematic Review of Three Refereed LD Journals

    ERIC Educational Resources Information Center

    McFarland, Laura; Williams, Jacob; Miciak, Jeremy

    2013-01-01

    Content analyses of journals in the field of LD provide a means of surveying research and publication trends, the knowledge of which may inform policy and practice related to future research agendas. As the first decade of the current millennium was particularly contentious for the field of LD, we felt that a content review would be timely. In…

  9. Can Social Stories Enhance the Interpersonal Conflict Resolution Skills of Children with LD?

    ERIC Educational Resources Information Center

    Kalyva, Efrosini; Agaliotis, Ioannis

    2009-01-01

    Since many children with learning disabilities (LD) face interpersonal conflict resolution problems, this study examines the efficacy of social stories in helping them choose more appropriate interpersonal conflict resolution strategies. A social story was recorded and played to the 31 children with LD in the experimental group twice a week for a…

  10. Computer Literate LD Students Shine at Lakewood Elementary School in Silicon Valley, CA.

    ERIC Educational Resources Information Center

    Messinger, Mildred

    1983-01-01

    In Sunnyvale, California (the computer industry's "Silicon Valley") two teachers of elementary learning disabled (LD) students took a course in microcomputers, acquired three microcomputers with a grant, and trained the students to use computer-assisted instruction, with such results as that in one year, 37 LD students tutored 100 primary…

  11. Recognizing Non-Verbal Social Cues Promotes Social Performance in LD Adolescents

    ERIC Educational Resources Information Center

    Greenbank, Alicia; Sharon, Assia

    2013-01-01

    The research examined whether an educational intervention could enhance the ability of learning disabled (LD) adolescents to recognize non-verbal emotional messages and thus their social functioning. Most LD children have problems recognizing non-verbal cues, particularly emotional ones, and have social difficulties. The study examined the…

  12. Introducing Algebra through the Graphical Representation of Functions: A Study among LD Students

    ERIC Educational Resources Information Center

    Sauriol, Jennifer

    2013-01-01

    This longitudinal study evaluates the impact of a new Algebra 1 course at a High School for language-based learning-disabled (LD) students. The new course prioritized the teaching of relationship graphs and functions as an introduction to algebra. Across three studies, the dissertation documents and evaluates the progress made by LD high school…

  13. Investigation of watercourses by comparison of successive historical map surveys of Western Hungary

    NASA Astrophysics Data System (ADS)

    Kovács, Gábor

    2010-05-01

    The Second (Timár et al., 2006) and Third Military Survey (Biszak et al., 2007) of the Habsburg Empire, completed in the 19th century (1806-69 and 1869-87), can be very useful in different scientific investigations because of their accuracy and data content. The mapmakers used geodetic projections and survey technologies provided high accuracy. Therefore, scientists can use these maps and the represented objects in retrospective studies. The streams were drawn with very thin lines that also ascertain the high accuracy of their location. Previous study used the Second Military Survey to examine the neotectonic evaluation of the western part of the Pannonian Basin, bordered by Pinka, Rába and Répce Rivers (Kovács, 2010). The watercourses, especially alluvial ones, react very sensitively to tectonic forcing (Schumm & Khan, 1972; Ouchi, 1985). However, the present-day course of the creeks and rivers are mostly regulated, therefore they are unsuitable for such studies. The watercourses have reconstructed from maps surveyed prior to the main water control measures. The Second Military Survey was a perfect source for such studies. The investigated streams were free meandering ones. They could flood their banks, and only natural levees were present. After georeferencing the maps of the area, the streams were digitized, and their sinuosity values were computed. Where significant sinuosity changes have been detected along the streams, it can be considered as indicators of differential uplift or subsidence of the bedrock/alluvium. The goal of this study is to decide the character of several stream sections: were they free meandering ones or not? Some of the sections are antecedent ones, especially at the Vas Mountain at the present Austrian-Hungarian border. If the shapes of the watercourses on the different surveys are almost the same, the sinuosity refers to a prior, forced state of the stream. After digitizing the watercourses on the Third Military Survey sheets, some

  14. Comparison of point counts and territory mapping for detecting effects of forest management on songbirds

    USGS Publications Warehouse

    Newell, Felicity L.; Sheehan, James; Wood, Petra Bohall; Rodewald, Amanda D.; Buehler, David A.; Keyser, Patrick D.; Larkin, Jeffrey L.; Beachy, Tiffany A.; Bakermans, Marja H.; Boves, Than J.; Evans, Andrea; George, Gregory A.; McDermott, Molly E.; Perkins, Kelly A.; White, Matthew; Wigley, T. Bently

    2013-01-01

    Point counts are commonly used to assess changes in bird abundance, including analytical approaches such as distance sampling that estimate density. Point-count methods have come under increasing scrutiny because effects of detection probability and field error are difficult to quantify. For seven forest songbirds, we compared fixed-radii counts (50 m and 100 m) and density estimates obtained from distance sampling to known numbers of birds determined by territory mapping. We applied point-count analytic approaches to a typical forest management question and compared results to those obtained by territory mapping. We used a before–after control impact (BACI) analysis with a data set collected across seven study areas in the central Appalachians from 2006 to 2010. Using a 50-m fixed radius, variance in error was at least 1.5 times that of the other methods, whereas a 100-m fixed radius underestimated actual density by >3 territories per 10 ha for the most abundant species. Distance sampling improved accuracy and precision compared to fixed-radius counts, although estimates were affected by birds counted outside 10-ha units. In the BACI analysis, territory mapping detected an overall treatment effect for five of the seven species, and effects were generally consistent each year. In contrast, all point-count methods failed to detect two treatment effects due to variance and error in annual estimates. Overall, our results highlight the need for adequate sample sizes to reduce variance, and skilled observers to reduce the level of error in point-count data. Ultimately, the advantages and disadvantages of different survey methods should be considered in the context of overall study design and objectives, allowing for trade-offs among effort, accuracy, and power to detect treatment effects.

  15. Resolving grounding line ambiguities around Antarctica from inter-comparison and driving stress mapping

    NASA Astrophysics Data System (ADS)

    Depoorter, M.; Bamber, J. L.

    2012-04-01

    Delineating the Grounding Line (GL) in Antarctica is a challenging issue. The accurate positioning of the GL is crucial to ice sheet and GL migration modelling, to mass budget calculation of ice sheets, as well as to the planning of an Ice Penetrating Radar (IPR) or an ice coring campaign. Efforts into defining and mapping the GL have been made using a range of methodologies. Here, we analyse different GL data sets based on optical imagery, satellite altimetry, and SAR interferometry. We use driving stress mapping derived from a 1km DEM to investigate and resolve discrepancies in GL positioning around Antarctica from different methods. Typical driving stresses are calculated at GL for different ice dynamics and regions of Antarctica. The benefit of our approach to slope based technique is that we identify patterns and not only sharp linear transitions. Driving stress mapping allows us to discriminate between grounded and floating ice in a quantitative manner, as opposed to subjective interpretation. We also detect ice plains that have been reported and suggest the existence of new ones along the Siple Coast. While the various data sets agree on slow moving ice within a few kilometres, we find that the only reliable technique to delineate GL on fast flowing ice is Differential SAR Interferometry (DInSAR). DInSAR GL data, however, are not available everywhere as they require at least two SAR image pairs. ICESat repeat tracks of the grounding zone can help in certain places but coverage is discreet and scarce for fast moving ice. We find that the Antarctic Surface Accumulation and Ice Discharge (ASAID) GL usually does a better job than MOA GL on fast flowing features.

  16. Mapping extracellular pH in rat brain gliomas in vivo by 1H magnetic resonance spectroscopic imaging: comparison with maps of metabolites.

    PubMed

    García-Martín, M L; Hérigault, G; Rémy, C; Farion, R; Ballesteros, P; Coles, J A; Cerdán, S; Ziegler, A

    2001-09-01

    The value of extracellular pH (pH(e)) in tumors is an important factor in prognosisand choice of therapy. We demonstrate here that pH(e) can be mappedin vivo in a rat brain glioma by (1)H magnetic resonance spectroscopic imaging (SI) of the pH buffer (+/-)2-imidazole-1-yl-3-ethoxycarbonylpropionic acid (IEPA). (1)H SI also allowed us to map metabolites, and, to better understand the determinants of pH(e), we compared maps of pH(e), metabolites, and the distribution of the contrast agent gadolinium1,4,7,10-tetraazacyclododecane-N,N',N",N"'-tetraaceticacid (Gd-DOTA). C6 cells injected in caudate nuclei of four Wistar rats gave rise to gliomas of approximately 10 mm in diameter. Three mmols of IEPA were injected in the right jugular vein from t = 0 to t = 60 min. From t = 50 min to t = 90 min, spin-echo (1)H SI was performed with an echo time of 40 ms in a 2.5-mm slice including the glioma (nominal voxel size, 2.2 microl). IEPA resonances were detected only within the glioma and were intense enough for pH(e) to be calculated from the chemical shift of the H2 resonance in almost all voxels of the glioma. (1)H spectroscopic images with an echo time of 136 ms were then acquired to map metabolites: lactate, choline-containing compounds (tCho), phosphocreatine/creatine, and N-acetylaspartate. Finally, T(1)-weighted imaging after injection of a bolus of Gd-DOTA gave a map indicative of extravasation. On average, the gradient of pH(e) (measured where sufficient IEPA was present) from the center to the periphery was not statistically significant. Mean pH(e) was calculated for each of the four gliomas, and the average was 7.084 +/- 0.017 (+/- SE; n = 4 rats), which is acid with respect to pH(e) of normal tissue. After normalization of spectra to their water peak, voxel-by-voxel comparisons of peak areas showed that N-acetylaspartate, a marker of neurons, correlated negatively with IEPA (P < 0.0001) and lactate (P < 0.05), as expected of a glioma surrounded by normal tissue. t

  17. D Digitization and Mapping of Heritage Monuments and Comparison with Historical Drawings

    NASA Astrophysics Data System (ADS)

    Fiorillo, F.; Remondino, F.; Barba, S.; Santoriello, A.; De Vita, C. B.; Casellato, A.

    2013-07-01

    The paper presents the integration of different 3D recording techniques and instruments to survey the archaeological area of Paestum (Italy). Paestum was included in the UNESCO World Heritage list since 1998, and still preserves the ruins of Greek and Roman times. Photogrammetry and terrestrial laser scanning (TLS) acquisitions were integrated in order to exploit the advantages of the 3D surveying techniques and produce digital models, orthoimages, maps and other geometric representations useful for archaeological, architectural and cultural touristic purposes. The obtained 3D results are then compared to historical representations to show the high quality of such ancient manual drawings.

  18. Comparison of interferometric and stereo-radargrammetric 3D metrics in mapping of forest resources

    NASA Astrophysics Data System (ADS)

    Karila, K.; Karjalainen, M.; Yu, X.; Vastaranta, M.; Holopainen, M.; Hyyppa, J.

    2015-04-01

    Accurate forest resources maps are needed in diverse applications ranging from the local forest management to the global climate change research. In particular, it is important to have tools to map changes in forest resources, which helps us to understand the significance of the forest biomass changes in the global carbon cycle. In the task of mapping changes in forest resources for wide areas, Earth Observing satellites could play the key role. In 2013, an EU/FP7-Space funded project "Advanced_SAR" was started with the main objective to develop novel forest resources mapping methods based on the fusion of satellite based 3D measurements and in-situ field measurements of forests. During the summer 2014, an extensive field surveying campaign was carried out in the Evo test site, Southern Finland. Forest inventory attributes of mean tree height, basal area, mean stem diameter, stem volume, and biomass, were determined for 91 test plots having the size of 32 by 32 meters (1024 m2). Simultaneously, a comprehensive set of satellite and airborne data was collected. Satellite data also included a set of TanDEM-X (TDX) and TerraSAR-X (TSX) X-band synthetic aperture radar (SAR) images, suitable for interferometric and stereo-radargrammetric processing to extract 3D elevation data representing the forest canopy. In the present study, we compared the accuracy of TDX InSAR and TSX stereo-radargrammetric derived 3D metrics in forest inventory attribute prediction. First, 3D data were extracted from TDX and TSX images. Then, 3D data were processed as elevations above the ground surface (forest canopy height values) using an accurate Digital Terrain Model (DTM) based on airborne laser scanning survey. Finally, 3D metrics were calculated from the canopy height values for each test plot and the 3D metrics were compared with the field reference data. The Random Forest method was used in the forest inventory attributes prediction. Based on the results InSAR showed slightly better

  19. Comparison of the Experimental Performance of Ferroelectric CPW Circuits with Method of Moment Simulations and Conformal Mapping

    NASA Technical Reports Server (NTRS)

    VanKeuls, Fred W.; Chevalier, Chris T.; Miranda, Felix A.; Carlson, C. M.; Rivkin, T. V.; Parilla, P. A.; Perkins, J. D.; Ginley, D. S.

    2001-01-01

    Experimental measurements of coplanar waveguide (CPW) circuits atop thin films of ferroelectric Ba(x)Sr(1-x)TiO3 (BST) were made as a function bias from 0 to 200 V and frequency from 0.045 to 20 GHz. The resulting phase shifts are compared with method of moments electromagnetic simulations and a conformal mapping analysis to determine the dielectric constant of the BST films. Based on the correlation between the experimental and the modeled data, an analysis of the extent to which the electromagnetic simulators provide reliable values for the dielectric constant of the ferroelectric in these structures has been performed. In addition, to determine how well the modeled data compare with experimental data, the dielectric constant values were also compared to low frequency measurements of interdigitated capacitor circuits on the same films. Results of these comparisons will be presented.

  20. Learning Strategies: Secondary LD Students in the Mainstream.

    ERIC Educational Resources Information Center

    D'Antoni, Alice; And Others

    The paper presents four learning strategy techniques--the SQ3R method of study, the Multipass Strategy, the Advanced Study Guide Technique, and Cognitive Mapping--for use with secondary level learning disabled students. The SQ3R method involves the five steps of survey, question, read, recite, and review. An adaption of the SQ3R method, the…

  1. Landslide susceptibility mapping in Mawat area, Kurdistan Region, NE Iraq: a comparison of different statistical models

    NASA Astrophysics Data System (ADS)

    Othman, A. A.; Gloaguen, R.; Andreani, L.; Rahnama, M.

    2015-03-01

    During the last decades, expansion of settlements into areas prone to landslides in Iraq has increased the importance of accurate hazard assessment. Susceptibility mapping provides information about hazardous locations and thus helps to potentially prevent infrastructure damage due to mass wasting. The aim of this study is to evaluate and compare frequency ratio (FR), weight of evidence (WOE), logistic regression (LR) and probit regression (PR) approaches in combination with new geomorphological indices to determine the landslide susceptibility index (LSI). We tested these four methods in Mawat area, Kurdistan Region, NE Iraq, where landslides occur frequently. For this purpose, we evaluated 16 geomorphological, geological and environmental predicting factors mainly derived from the advanced spaceborne thermal emission and reflection radiometer (ASTER) satellite. The available reference inventory includes 351 landslides representing a cumulative surface of 3.127 km2. This reference inventory was mapped from QuickBird data by manual delineation and partly verified by field survey. The areas under curve (AUC) of the receiver operating characteristic (ROC), and relative landslide density (R index) show that all models perform similarly and that focus should be put on the careful selection of proxies. The results indicate that the lithology and the slope aspects play major roles for landslide occurrences. Furthermore, this paper demonstrates that using hypsometric integral as a prediction factor instead of slope curvature gives better results and increases the accuracy of the LSI.

  2. A comparison of modeling schemes for mapping daily evapotranspiration at high resolution using remote sensing

    NASA Astrophysics Data System (ADS)

    Ring, T.; Cuenca, R. H.; Anderson, M. C.; Hain, C.; Semmens, K. A.; Kustas, W. P.; Alfieri, J. G.

    2014-12-01

    Evapotranspiration (ET) is an important component of the hydrologic cycle that transfers large quantities of water vapor away from Earth's surface into the atmosphere. In addition to having water management applications in agriculture, including monitoring water rights compliance and irrigation scheduling, it is also important to be able to accurately measure water used by other landscapes for soil-vegetation-atmosphere-transfer (SVAT) models. This can only be done with large scale estimations which are most efficiently achieved with remote sensing. This research compares daily ET retrieved from two remote sensing modeling schemes: a) Reconstructed METRIC: Mapping EvapoTranspiration at high Resolution with Internalized Calibration; and b) ALEXI/DisALEXI: Atmosphere-Land EXchange Inverse /Disaggregated ALEXI, over two predominately forested landscapes. ET flux estimates are retrieved from ALEXI/DisALEXI using GOES (daily, 4km), MODIS (daily, 1km) and Landsat 8 (16 days, 30m) and from Reconstructed METRIC using Landsat 8. We develop daily Landsat scale ET maps for the summer months of 2013. The flux-tower footprint is calculated at each site to match the remotely sensed retrieval with that of the flux tower such that modeled output can be evaluated against ground based observations, taken from the AmeriFlux network. In addition, surface and evaporative fluxes retrieved from the two models are inter-compared over the different land cover types in the scenes. Differences in input and data processing requirements for each of the two methods will be also described

  3. A comparison of infrared, radar, and geologic mapping of lunar craters

    USGS Publications Warehouse

    Thompson, T.W.; Masursky, H.; Shorthill, R.W.; Tyler, G.L.; Zisk, S.H.

    1974-01-01

    Between 1000 and 2000 infrared (eclipse) and radar anomalies have been mapped on the nearside hemisphere of the Moon. A study of 52 of these anomalies indicates that most are related to impact craters and that the nature of the infrared and radar responses is compatible with a previously developed geologic model of crater aging processes. The youngest craters are pronounced thermal and radar anomalies; that is, they have enhanced eclipse temperatures and are strong radar scatterers. With increasing crater age, the associated thermal and radar responses become progressively less noticeable until they assume values for the average lunar surface. The last type of anomaly to disappear is radar enhancement at longer wavelengths. A few craters, however, have infrared and radar behaviors not predicted by the aging model. One previously unknown feature - a field strewn with centimeter-sized rock fragments - has been identified by this technique of comparing maps at the infrared, radar, and visual wavelengths. ?? 1974 D. Reidel Publishing Company, Dordrecht-Holland.

  4. Functional Lung MRI in Chronic Obstructive Pulmonary Disease: Comparison of T1 Mapping, Oxygen-Enhanced T1 Mapping and Dynamic Contrast Enhanced Perfusion

    PubMed Central

    Jobst, Bertram J.; Triphan, Simon M. F.; Sedlaczek, Oliver; Anjorin, Angela; Kauczor, Hans Ulrich; Biederer, Jürgen; Ley-Zaporozhan, Julia; Ley, Sebastian; Wielpütz, Mark O.

    2015-01-01

    Purpose Monitoring of regional lung function in interventional COPD trials requires alternative endpoints beyond global parameters such as FEV1. T1 relaxation times of the lung might allow to draw conclusions on tissue composition, blood volume and oxygen fraction. The aim of this study was to evaluate the potential value of lung Magnetic resonance imaging (MRI) with native and oxygen-enhanced T1 mapping for the assessment of COPD patients in comparison with contrast enhanced perfusion MRI. Materials and Methods 20 COPD patients (GOLD I-IV) underwent a coronal 2-dimensional inversion recovery snapshot flash sequence (8 slices/lung) at room air and during inhalation of pure oxygen, as well as dynamic contrast-enhanced first-pass perfusion imaging. Regional distribution of T1 at room air (T1), oxygen-induced T1 shortening (ΔT1) and peak enhancement were rated by 2 chest radiologists in consensus using a semi-quantitative 3-point scale in a zone-based approach. Results Abnormal T1 and ΔT1 were highly prevalent in the patient cohort. T1 and ΔT1 correlated positively with perfusion abnormalities (r = 0.81 and r = 0.80; p&0.001), and with each other (r = 0.80; p<0.001). In GOLD stages I and II ΔT1 was normal in 16/29 lung zones with mildly abnormal perfusion (15/16 with abnormal T1). The extent of T1 (r = 0.45; p<0.05), ΔT1 (r = 0.52; p<0.05) and perfusion abnormalities (r = 0.52; p<0.05) showed a moderate correlation with GOLD stage. Conclusion Native and oxygen-enhanced T1 mapping correlated with lung perfusion deficits and severity of COPD. Under the assumption that T1 at room air correlates with the regional pulmonary blood pool and that oxygen-enhanced T1 reflects lung ventilation, both techniques in combination are principally suitable to characterize ventilation-perfusion imbalance. This appears valuable for the assessment of regional lung characteristics in COPD trials without administration of i.v. contrast. PMID:25822195

  5. Land Cover of Northern Eurasia: Comparison and Assessment of Coarse Resolution Maps

    NASA Astrophysics Data System (ADS)

    Krankina, O. N.; Pflugmacher, D.; Cohen, W.; Kennedy, R.; Nelson, P.; Loboda, T.

    2007-12-01

    Consistent measurements of land cover are critical for addressing a range of important science questions, from quantifying the effects of vegetation on the carbon, energy, and water cycles, to understanding the social and economic causes and consequences of land-use and land-cover change. While multiple moderate and coarse- resolution land-cover products have been developed, they disagree significantly. Resolving discrepancies among maps is particularly challenging for boreal and temperate Northern Eurasia, where validation sites are sparse and processes of ecosystem disturbance and land-cover change are widespread. To identify specific needs and possibilities for improved mapping of land cover across boreal and temperate Northern Eurasia, we compared the performance of three recent land-cover products based on different sensors: MODIS (Global Land Cover Collection 4), AVHRR (DISCover v. 2.0), and SPOT VEGETATION (GLC2000 for Northern Eurasia v. 4.0). First, we examined the level of agreement among these data sets across the entire region. On a qualitative level, the assessment of general patterns indicates the highest degree of disagreement in transitional zones at the northern and southern fringes of boreal forest, in mountainous regions, and in areas of extensive wetlands, agricultural development, and urban land use. The quantitative analysis measured the level of disagreement between land-cover classes aggregated according to dominant type of vegetation (trees, shrubs, herbaceous, bare land, permanent snow/ice). Secondly, validation of these products was performed at two test sites where Landsat-based classifications were developed based on FAO Land Cover Classification System. Fractional land cover was calculated for each 1x1 km pixel and used to construct fractional error matrices. Most errors were associated with "mixed" coarse-resolution pixels (i.e. those having nearly equal percentage of multiple class types), while errors in "pure" (single class) pixels

  6. Computational approach towards promoter sequence comparison via TF mapping using a new distance measure.

    PubMed

    Meera, A; Rangarajan, Lalitha; Bhat, Savithri

    2011-03-01

    We propose a method for identifying transcription factor binding sites (TFBS) in the given promoter sequence and mapping the transcription factors (TFs). The proposed algorithm searches the +1 transcription start site (TSS) for eukaryotic and prokaryotic sequences individually. The algorithm was tested with sequences from both eukaryotes and prokaryotes for at least 9 experimentally verified and validated functional TFs in promoter sequences. The order and type of TF binding to the promoter of genes encoding central metabolic pathway (CMP) enzyme was tabulated. A new similarity measure was devised for scoring the similarity between a pair of promoter sequences based on the number and order of motifs. Further, these were grouped in clusters considering the scores between them. The distance between each of the clusters in individual pathway was calculated and a phylogenetic tree was developed. This method is further applied to other pathways such as lipid and amino acid biosynthesis to retrieve and compare experimentally verified and conserved TFBS. PMID:21369887

  7. Comparison of fire fuel maps produced using MSS and AVHRR data

    USGS Publications Warehouse

    Miller, Wayne A.; Johnston, David C.

    1985-01-01

    The fuel information, in support of the Bureau of Land Management's (BLM) national fire program, has been obtained through the manila interpretation of Landsat multi-spectral scanner images and digital image analysis of Advanced Very High Resolution Radiometer (AVHRR) data. The BLM, in cooperation with the Earth Resources Observation Systems Data Center, determined that the accuracy (approximately 90 percent overall) was similar for deriving fire fuel information for Malheur County in eastern Oregon using either approach, and for an area the size of Malheur County (6.4 million acres), the costs were about the same (0.19 cents per acre). But the cost per acre was substantially lower (0.04 cents) where digital analysis of AVHRR data were used to derive fire fuel information for a 42-million-acre area in eastern Oregon. Based on these results, the BLM is using digital analysis of AVHRR data to support its operational fire fuel mapping program.

  8. Comparison of the Biological Impacts of the Fluoride Compounds by Graphical Risk Visualization Map Technique.

    PubMed

    Usuda, Kan; Kono, Rei; Ueno, Takaaki; Ito, Yuichi; Dote, Tomotaro; Yokoyama, Hirotaka; Kono, Koichi; Tamaki, Junko

    2015-09-01

    Various fluoride compounds are widely used in industry. The present risk assessment study was conducted using a series of inorganic binary fluorides of the type XFn, where X(n) = Na(+), K(+), Li(+), Mg(2+), Ca(2+), Sr(2+), Ba(2+), Al(3+), Nd(3+), La(3+), Ce(3+), Sm(3+), Gd(3+), Y(3+), Yb(2+), and Zn(2+). The aqueous solutions of these salts were orally administrated to 16 experimental groups (one for each of the salts tested). The levels of fluoride, N-acetyl-β-D-glucosaminidase in cumulative 24-h urine samples and creatinine clearance were measured to assess possible acute renal damages. The levels of fluoride, alanine aminotransferase, and aspartate aminotransferase were also determined in serum samples to assess possible acute hepatic damages. The results reveal that sodium fluoride (NaF), potassium fluoride (KF), and zinc fluoride tetrahydrate (ZnF2 (.)4H2O) can carry the fluoride ion into the bloodstream and that it is excreted via urine more readily than the other compounds tested. These fluorides were assigned the highest risk impact factor. Most of the rare earth fluorides are insoluble in water while those groups 2 and 13 of the periodic table are slightly soluble, so that they do not have a significant negative risk. These findings suggest that the biological impact of fluoride depends on the accompanying counter ion and its solubility. The risk map obtained in the present study shows that the graphical visualization map technique employed is a valuable new tool to assess the toxicological risk of chemical compounds. PMID:25749926

  9. Comprehending speaker intent in rebuttal analogy use: the role of irony mapping, absurdity comparison and argumentative convention.

    PubMed

    Colston, H L

    2000-01-01

    Rebuttal analogies (e.g., "Politicians arguing over the renaming of an airport is like watering your petunias when your house is on fire") are commonly used as responses in verbal conflicts. The following study investigated the role that irony mapping, absurdity comparison, and argumentative convention play in interpreters' derivations of speaker's intentions in using rebuttal analogies. In general, these intentions are to demonstrate the unsoundness of the opposed proposition ("argument") and its advocate ("social attack"), (Whaley & Holloway, 1996). Three rebuttal analogy types were rated on argumentativeness and social attack in verbal conflict and nonverbal conflict scenarios. The results of six experiments on 120 participants found that analogies with ironic bases (e.g., "Doubling the defense budget in order to intimidate North Korea is like using a chainsaw to file your nails") were perceived as more of a social attack and as more argumentative than analogies with absurd (e.g., "... using ketchup to wax your car") and nonironic (e.g., "... using a nailfile to file your nails") bases. No difference was found between the two scenario types. Norming data confirmed equivalence of absurdity of ironic and absurd bases, and greater irony of ironic over absurd bases. The results thus implicate hearers' use of the ironic structure between bases and targets in the interpretation of rebuttal analogies rather than mere absurdity comparison or argumentative convention. PMID:11419221

  10. The LD50 associated with exposure to the atomic bombing of Hiroshima and Nagasaki.

    PubMed

    Fujita, S; Kato, H; Schull, W J

    1991-03-01

    Numerous attempts have been made to estimate the distance at which 50% of the individuals exposed to the A-bombing of Hiroshima and Nagasaki died, ostensibly from their exposure to ionizing radiation. It is difficult to convert most of these distance estimates to a dose-related LD50, since radiation shielding was ignored. The recent reassessment of the atomic bomb radiation dosimetry has provided an opportunity for the estimation of the bone marrow LD50. There is a surprising concordance in the various estimates that have been made given the different groups of survivors involved and the methods used to estimate the LD50/60. PMID:1762100

  11. Comparison of Digital Surface Models for Snow Depth Mapping with Uav and Aerial Cameras

    NASA Astrophysics Data System (ADS)

    Boesch, R.; Bühler, Y.; Marty, M.; Ginzler, C.

    2016-06-01

    Photogrammetric workflows for aerial images have improved over the last years in a typically black-box fashion. Most parameters for building dense point cloud are either excessive or not explained and often the progress between software releases is poorly documented. On the other hand, development of better camera sensors and positional accuracy of image acquisition is significant by comparing product specifications. This study shows, that hardware evolutions over the last years have a much stronger impact on height measurements than photogrammetric software releases. Snow height measurements with airborne sensors like the ADS100 and UAV-based DSLR cameras can achieve accuracies close to GSD * 2 in comparison with ground-based GNSS reference measurements. Using a custom notch filter on the UAV camera sensor during image acquisition does not yield better height accuracies. UAV based digital surface models are very robust. Different workflow parameter variations for ADS100 and UAV camera workflows seem to have only random effects.

  12. Individual and combined effects of LD and ADHD on computerized neurocognitive concussion test performance: evidence for separate norms.

    PubMed

    Elbin, R J; Kontos, Anthony P; Kegel, Nate; Johnson, Eric; Burkhart, Scott; Schatz, Philip

    2013-08-01

    Decreased neurocognitive performance in individuals with self-reported attention deficit hyperactivity disorder (ADHD) and learning disability (LD) is well documented in the neuropsychological research literature. Previous studies employing paper-and-pencil neurocognitive assessments report lower performance in individuals with ADHD and LD. The purpose of the current study was to examine the influence of a self-reported diagnosis of LD, ADHD, and combined LD/ADHD on baseline computerized neurocognitive testing (CNT) used for the concussion assessment. Results revealed athletes with a self-reported diagnosis of LD, ADHD, and/or combined LD/ADHD demonstrated lower performance on baseline CNT and reported larger numbers of symptoms than did control athletes without these diagnoses. These findings provide evidence for the development of separate normative data for athletes with LD, ADHD, and LD/ADHD diagnoses on CNT batteries commonly used for concussion management. PMID:23608188

  13. Effect of water/fuel emulsions and a cerium-based combustion improver additive on HD and LD diesel exhaust emissions.

    PubMed

    Farfaletti, Arianna; Astorga, Covadonga; Martini, Giorgio; Manfredi, Urbano; Mueller, Anne; Rey, Maria; De Santi, Giovanni; Krasenbrink, Alois; Larsen, Bo R

    2005-09-01

    One of the major technological challenges for the transport sector is to cut emissions of particulate matter (PM) and nitrogen oxides (NOx) simultaneously from diesel vehicles to meet future emission standards and to reduce their contribution to the pollution of ambient air. Installation of particle filters in all existing diesel vehicles (for new vehicles, the feasibility is proven) is an efficient but expensive and complicated solution; thus other short-term alternatives have been proposed. It is well known that water/diesel (W/ D) emulsions with up to 20% water can reduce PM and NOx emissions in heavy-duty (HD) engines. The amount of water that can be used in emulsions for the technically more susceptible light-duty (LD) vehicles is much lower, due to risks of impairing engine performance and durability. The present study investigates the potential emission reductions of an experimental 6% W/D emulsion with EURO-3 LD diesel vehicles in comparison to a commercial 12% W/D emulsion with a EURO-3 HD engine and to a Cerium-based combustion improver additive. For PM, the emulsions reduced the emissions with -32% for LD vehicles (mass/km) and -59% for the HD engine (mass/ kWh). However, NOx emissions remained unchanged, and emissions of other pollutants were actually increased forthe LD vehicles with +26% for hydrocarbons (HC), +18% for CO, and +25% for PM-associated benzo[a]pyrene toxicity equivalents (TEQ). In contrast, CO (-32%), TEQ (-14%), and NOx (-6%) were reduced by the emulsion for the HD engine, and only hydrocarbons were slightly increased (+16%). Whereas the Cerium-based additive was inefficient in the HD engine for all emissions except for TEQ (-39%), it markedly reduced all emissions for the LD vehicles (PM -13%, CO -18%, HC -26%, TEQ -25%) except for NOx, which remained unchanged. The presented data indicate a strong potential for reductions in PM emissions from current diesel engines by optimizing the fuel composition. PMID:16190241

  14. Mapping species distributions: a comparison of skilled naturalist and lay citizen science recording.

    PubMed

    van der Wal, René; Anderson, Helen; Robinson, Annie; Sharma, Nirwan; Mellish, Chris; Roberts, Stuart; Darvill, Ben; Siddharthan, Advaith

    2015-11-01

    To assess the ability of traditional biological recording schemes and lay citizen science approaches to gather data on species distributions and changes therein, we examined bumblebee records from the UK's national repository (National Biodiversity Network) and from BeeWatch. The two recording approaches revealed similar relative abundances of bumblebee species but different geographical distributions. For the widespread common carder (Bombus pascuorum), traditional recording scheme data were patchy, both spatially and temporally, reflecting active record centre rather than species distribution. Lay citizen science records displayed more extensive geographic coverage, reflecting human population density, thus offering better opportunities to account for recording effort. For the rapidly spreading tree bumblebee (Bombus hypnorum), both recording approaches revealed similar distributions due to a dedicated mapping project which overcame the patchy nature of naturalist records. We recommend, where possible, complementing skilled naturalist recording with lay citizen science programmes to obtain a nation-wide capability, and stress the need for timely uploading of data to the national repository. PMID:26508346

  15. A comparison of automated anatomical–behavioural mapping methods in a rodent model of stroke☆

    PubMed Central

    Crum, William R.; Giampietro, Vincent P.; Smith, Edward J.; Gorenkova, Natalia; Stroemer, R. Paul; Modo, Michel

    2013-01-01

    Neurological damage, due to conditions such as stroke, results in a complex pattern of structural changes and significant behavioural dysfunctions; the automated analysis of magnetic resonance imaging (MRI) and discovery of structural–behavioural correlates associated with these disorders remains challenging. Voxel lesion symptom mapping (VLSM) has been used to associate behaviour with lesion location in MRI, but this analysis requires the definition of lesion masks on each subject and does not exploit the rich structural information in the images. Tensor-based morphometry (TBM) has been used to perform voxel-wise structural analyses over the entire brain; however, a combination of lesion hyper-intensities and subtle structural remodelling away from the lesion might confound the interpretation of TBM. In this study, we compared and contrasted these techniques in a rodent model of stroke (n = 58) to assess the efficacy of these techniques in a challenging pre-clinical application. The results from the automated techniques were compared using manually derived region-of-interest measures of the lesion, cortex, striatum, ventricle and hippocampus, and considered against model power calculations. The automated TBM techniques successfully detect both lesion and non-lesion effects, consistent with manual measurements. These techniques do not require manual segmentation to the same extent as VLSM and should be considered part of the toolkit for the unbiased analysis of pre-clinical imaging-based studies. PMID:23727124

  16. Comparison between simulated annealing algorithms and rapid chain delineation in the construction of genetic maps.

    PubMed

    Nascimento, Moysés; Cruz, Cosme Damião; Peternelli, Luiz Alexandre; Campana, Ana Carolina Mota

    2010-04-01

    The efficiency of simulated annealing algorithms and rapid chain delineation in establishing the best linkage order, when constructing genetic maps, was evaluated. Linkage refers to the phenomenon by which two or more genes, or even more molecular markers, can be present in the same chromosome or linkage group. In order to evaluate the capacity of algorithms, four F(2) co-dominant populations, 50, 100, 200 and 1000 in size, were simulated. For each population, a genome with four linkage groups (100 cM) was generated. The linkage groups possessed 51, 21, 11 and 6 marks, respectively, and a corresponding distance of 2, 5, 10 and 20 cM between adjacent marks, thereby causing various degrees of saturation. For very saturated groups, with an adjacent distance between marks of 2 cM and in greater number, i.e., 51, the method based upon stochastic simulation by simulated annealing presented orders with distances equivalent to or lower than rapid chain delineation. Otherwise, the two methods were commensurate through presenting the same SARF distance. PMID:21637501

  17. Comparison between simulated annealing algorithms and rapid chain delineation in the construction of genetic maps

    PubMed Central

    2010-01-01

    The efficiency of simulated annealing algorithms and rapid chain delineation in establishing the best linkage order, when constructing genetic maps, was evaluated. Linkage refers to the phenomenon by which two or more genes, or even more molecular markers, can be present in the same chromosome or linkage group. In order to evaluate the capacity of algorithms, four F2 co-dominant populations, 50, 100, 200 and 1000 in size, were simulated. For each population, a genome with four linkage groups (100 cM) was generated. The linkage groups possessed 51, 21, 11 and 6 marks, respectively, and a corresponding distance of 2, 5, 10 and 20 cM between adjacent marks, thereby causing various degrees of saturation. For very saturated groups, with an adjacent distance between marks of 2 cM and in greater number, i.e., 51, the method based upon stochastic simulation by simulated annealing presented orders with distances equivalent to or lower than rapid chain delineation. Otherwise, the two methods were commensurate through presenting the same SARF distance. PMID:21637501

  18. Analysis of ligand-protein exchange by Clustering of Ligand Diffusion Coefficient Pairs (CoLD-CoP)

    NASA Astrophysics Data System (ADS)

    Snyder, David A.; Chantova, Mihaela; Chaudhry, Saadia

    2015-06-01

    NMR spectroscopy is a powerful tool in describing protein structures and protein activity for pharmaceutical and biochemical development. This study describes a method to determine weak binding ligands in biological systems by using hierarchic diffusion coefficient clustering of multidimensional data obtained with a 400 MHz Bruker NMR. Comparison of DOSY spectrums of ligands of the chemical library in the presence and absence of target proteins show translational diffusion rates for small molecules upon interaction with macromolecules. For weak binders such as compounds found in fragment libraries, changes in diffusion rates upon macromolecular binding are on the order of the precision of DOSY diffusion measurements, and identifying such subtle shifts in diffusion requires careful statistical analysis. The "CoLD-CoP" (Clustering of Ligand Diffusion Coefficient Pairs) method presented here uses SAHN clustering to identify protein-binders in a chemical library or even a not fully characterized metabolite mixture. We will show how DOSY NMR and the "CoLD-CoP" method complement each other in identifying the most suitable candidates for lysozyme and wheat germ acid phosphatase.

  19. PLC Software Program for Leak Detector Station A1 SALW-LD-ST-A1

    SciTech Connect

    KOCH, M.R.

    2001-01-25

    This document describes the software program for the programmable logic controller for the leak detector station ''SALW-LD-ST-A1''. The appendices contains a copy of the printout of the software program.

  20. LdFlabarin, a New BAR Domain Membrane Protein of Leishmania Flagellum

    PubMed Central

    Thonnus, Magali; Salin, Bénédicte; Boissier, Fanny; Blancard, Corinne; Sauvanet, Cécile; Metzler, Christelle; Espiau, Benoît; Sahin, Annelise; Merlin, Gilles

    2013-01-01

    During the Leishmania life cycle, the flagellum undergoes successive assembly and disassembly of hundreds of proteins. Understanding these processes necessitates the study of individual components. Here, we investigated LdFlabarin, an uncharacterized L. donovani flagellar protein. The gene is conserved within the Leishmania genus and orthologous genes only exist in the Trypanosoma genus. LdFlabarin associates with the flagellar plasma membrane, extending from the base to the tip of the flagellum as a helicoidal structure. Site-directed mutagenesis, deletions and chimera constructs showed that LdFlabarin flagellar addressing necessitates three determinants: an N-terminal potential acylation site and a central BAR domain for membrane targeting and the C-terminal domain for flagellar specificity. In vitro, the protein spontaneously associates with liposomes, triggering tubule formation, which suggests a structural/morphogenetic function. LdFlabarin is the first characterized Leishmania BAR domain protein, and the first flagellum-specific BAR domain protein. PMID:24086735

  1. A Comparison of Forest Cover Maps in China in 2010 from Multi-source: Landsat, PALSAR, MCD12Q1, FAO FRA, and National Forestry Inventory

    NASA Astrophysics Data System (ADS)

    Qin, Y.; Xiao, X.; Dong, J.; Zhang, G.

    2014-12-01

    Forests and their changes are quite important to global carbon cycle, biodiversity and ecological services. Some uncertainties about forest cover maps still exist in China, so an accurate and updated forest cover distribution map is necessary as a baseline for carbon cycle estimation, especially at a fine spatial resolution. In this study, we developed a decision tree classification algorithm to identify forest and non-forest land cover, based on the signature analysis of 50 m ALOS PLASAR backscatter data in 2010 for a few land cover types. We used MODIS-based NDVI dataset in 2010 (MOD13Q1) to generate a map of annual maximum NDVI and used it to mask out built-up lands, barren lands, and sparsely vegetated lands. We applied the PALSAR-based algorithm and produced a forest cover map in China in 2010. Several comparisons in forest area and spatial distribution between the resultant forest map with other forest maps were carried out. The results show that the total forest area in China from the PALSAR-based forest map in 2010 is close to those of JAXA, FAO FRA, and National Forestry Inventory, and there are good linear relationships between the PALSAR-based forest map with the JAXA, MCD12Q1, and NLCD-China forest areas at province and county scales. All the forest maps have similar forest/non-forest distribution, but our PALSAR-based forest map recognizes well the agro-forests. The results of this study provide a baseline map of forest cover in China in 2010, which can be used for the studies of forest disturbance, carbon cycle, and ecological restoration projects in China.

  2. Geologic Interpretation of Data Sets Collected by Planetary Analog Geology Traverses and by Standard Geologic Field Mapping. Part 1; A Comparison Study

    NASA Technical Reports Server (NTRS)

    Eppler, Dean B.; Bleacher, Jacob F.; Evans, Cynthia A.; Feng, Wanda; Gruener, John; Hurwitz, Debra M.; Skinner, J. A., Jr.; Whitson, Peggy; Janoiko, Barbara

    2013-01-01

    Geologic maps integrate the distributions, contacts, and compositions of rock and sediment bodies as a means to interpret local to regional formative histories. Applying terrestrial mapping techniques to other planets is challenging because data is collected primarily by orbiting instruments, with infrequent, spatiallylimited in situ human and robotic exploration. Although geologic maps developed using remote data sets and limited "Apollo-style" field access likely contain inaccuracies, the magnitude, type, and occurrence of these are only marginally understood. This project evaluates the interpretative and cartographic accuracy of both field- and remote-based mapping approaches by comparing two 1:24,000 scale geologic maps of the San Francisco Volcanic Field (SFVF), north-central Arizona. The first map is based on traditional field mapping techniques, while the second is based on remote data sets, augmented with limited field observations collected during NASA Desert Research & Technology Studies (RATS) 2010 exercises. The RATS mission used Apollo-style methods not only for pre-mission traverse planning but also to conduct geologic sampling as part of science operation tests. Cross-comparison demonstrates that the Apollo-style map identifies many of the same rock units and determines a similar broad history as the field-based map. However, field mapping techniques allow markedly improved discrimination of map units, particularly unconsolidated surficial deposits, and recognize a more complex eruptive history than was possible using Apollo-style data. Further, the distribution of unconsolidated surface units was more obvious in the remote sensing data to the field team after conducting the fieldwork. The study raises questions about the most effective approach to balancing mission costs with the rate of knowledge capture, suggesting that there is an inflection point in the "knowledge capture curve" beyond which additional resource investment yields progressively

  3. Mapping stream habitats with a global positioning system: Accuracy, precision, and comparison with traditional methods

    USGS Publications Warehouse

    Dauwalter, D.C.; Fisher, W.L.; Belt, K.C.

    2006-01-01

    We tested the precision and accuracy of the Trimble GeoXT??? global positioning system (GPS) handheld receiver on point and area features and compared estimates of stream habitat dimensions (e.g., lengths and areas of riffles and pools) that were made in three different Oklahoma streams using the GPS receiver and a tape measure. The precision of differentially corrected GPS (DGPS) points was not affected by the number of GPS position fixes (i.e., geographic location estimates) averaged per DGPS point. Horizontal error of points ranged from 0.03 to 2.77 m and did not differ with the number of position fixes per point. The error of area measurements ranged from 0.1% to 110.1% but decreased as the area increased. Again, error was independent of the number of position fixes averaged per polygon corner. The estimates of habitat lengths, widths, and areas did not differ when measured using two methods of data collection (GPS and a tape measure), nor did the differences among methods change at three stream sites with contrasting morphologies. Measuring features with a GPS receiver was up to 3.3 times faster on average than using a tape measure, although signal interference from high streambanks or overhanging vegetation occasionally limited satellite signal availability and prolonged measurements with a GPS receiver. There were also no differences in precision of habitat dimensions when mapped using a continuous versus a position fix average GPS data collection method. Despite there being some disadvantages to using the GPS in stream habitat studies, measuring stream habitats with a GPS resulted in spatially referenced data that allowed the assessment of relative habitat position and changes in habitats over time, and was often faster than using a tape measure. For most spatial scales of interest, the precision and accuracy of DGPS data are adequate and have logistical advantages when compared to traditional methods of measurement. ?? 2006 Springer Science+Business Media

  4. A comparison of two-dimensional techniques for converting magnetocardiogram maps into effective current source distributions

    NASA Astrophysics Data System (ADS)

    Ogata, K.; Kandori, A.; Miyashita, T.; Sekihara, K.; Tsukada, K.

    2011-01-01

    The aim of this study was to develop a method for converting the pseudo two-dimensional current given by a current-arrow map (CAM) into the physical current. The physical current distribution is obtained by the optimal solution in a least mean square sense with Tikhonov regularization (LMSTR). In the current dipole simulation, the current pattern differences (ΔJ) between the results of the CAM and the LMSTR with several regularization parameters (α = 10-1-10-15) are calculated. In magnetocardiographic (MCG) analysis, the depth (zd) of a reconstruction plane is chosen by using the coordinates of the sinus node, which is estimated from MCG signals at the early p-wave. The ΔJs at p-wave peaks, QRS-complex peaks, and T-wave peaks of MCG signals for healthy subjects are calculated. Furthermore, correlation coefficients and regression lines are also calculated from the current values of the CAM and the LMSTR during p-waves, QRS-complex, and T-waves of MCG signals. In the simulation, the ΔJs (α ≈ 10-10) had a minimal value. The ΔJs (α = 10-10) at p-wave peaks, QRS-complex peaks, and T-wave peaks of MCG signals for healthy subjects also had minimal value. The correlation coefficients of the current values given by the CAM and the LMSTR (α = 10-10) were greater than 0.9. Furthermore, slopes (y) of the regression lines are correlated with the depth (zd) (r = -0.93). Consequently, the CAM value can be transformed into the LMSTR current value by multiplying it by the slope (y) obtained from the depth (zd). In conclusion, the result given by the CAM can be converted into an effective physical current distribution by using the depth (zd).

  5. Evaluation of the User Strategy on 2d and 3d City Maps Based on Novel Scanpath Comparison Method and Graph Visualization

    NASA Astrophysics Data System (ADS)

    Dolezalova, J.; Popelka, S.

    2016-06-01

    The paper is dealing with scanpath comparison of eye-tracking data recorded during case study focused on the evaluation of 2D and 3D city maps. The experiment contained screenshots from three map portals. Two types of maps were used - standard map and 3D visualization. Respondents' task was to find particular point symbol on the map as fast as possible. Scanpath comparison is one group of the eye-tracking data analyses methods used for revealing the strategy of the respondents. In cartographic studies, the most commonly used application for scanpath comparison is eyePatterns that output is hierarchical clustering and a tree graph representing the relationships between analysed sequences. During an analysis of the algorithm generating a tree graph, it was found that the outputs do not correspond to the reality. We proceeded to the creation of a new tool called ScanGraph. This tool uses visualization of cliques in simple graphs and is freely available at www.eyetracking.upol.cz/scangraph. Results of the study proved the functionality of the tool and its suitability for analyses of different strategies of map readers. Based on the results of the tool, similar scanpaths were selected, and groups of respondents with similar strategies were identified. With this knowledge, it is possible to analyse the relationship between belonging to the group with similar strategy and data gathered from the questionnaire (age, sex, cartographic knowledge, etc.) or type of stimuli (2D, 3D map).

  6. Potential of the insect growth regulator, fluazuron, in the control of Rhipicephalus sanguineus nymphs (Latreille, 1806) (Acari: Ixodidae): determination of the LD95 and LD50.

    PubMed

    de Oliveira, Patrícia Rosa; Calligaris, Izabela Braggião; Roma, Gislaine Cristina; Bechara, Gervásio Henrique; Pizano, Marcos Aparecido; Camargo Mathias, Maria Izabel

    2012-05-01

    Conventional pesticides have suffered two main drawbacks: (a) broad spectrum of action and (b) selection of target species resistant to the different active ingredients. Thus compounds that are less harmful to the environment and to human health, more specific and that do not induce resistance need to be developed. One alternative are insect growth regulators, such as fluazuron. The present study examined the efficacy of fluazuron (active ingredient of the acaricide Acatak®) and the sensitivity of Rhipicephalus sanguineus nymphs exposed to different doses of this chemical, and determined the lethal doses of fluazuron: 95% - LD(95) and 50% - LD(50). Different doses of fluazuron were applied in duplicates on the dorsal region of hosts ("pour on"). Distilled water was used in the control group. On the first day after the treatment with fluazuron, hosts were artificially infested with R. sanguineus nymphs. After engorgement, nymphs were removed, placed on Petri dishes, identified, and maintained in BOD incubator for 15days. Dead R. sanguineus nymphs after the treatment with 13 different doses of fluazuron were quantified and the LD(95) was estimated to be 100mg/kg and LD(50), 19.544mg/kg (12.478-22.636), with a confidence interval of 95%. Nymphs of R. sanguineus were sensitive to fluazuron at various levels, indicating that this insect growth regulator (IGR) may be used to control this parasite in this stage of its biological cycle, reducing the significant damage it causes. PMID:22465612

  7. The Effectiveness of Concept Maps in Teaching Physics Concepts Applied to Engineering Education: Experimental Comparison of the Amount of Learning Achieved with and without Concept Maps

    ERIC Educational Resources Information Center

    Martinez, Guadalupe; Perez, Angel Luis; Suero, Maria Isabel; Pardo, Pedro J.

    2013-01-01

    A study was conducted to quantify the effectiveness of concept maps in learning physics in engineering degrees. The following research question was posed: What was the difference in learning results from the use of concept maps to study a particular topic in an engineering course? The study design was quasi-experimental and used a post-test as a…

  8. Comparison of regression and kriging techniques for mapping the average annual precipitation of Turkey

    NASA Astrophysics Data System (ADS)

    Bostan, P. A.; Heuvelink, G. B. M.; Akyurek, S. Z.

    2012-10-01

    Accurate mapping of the spatial distribution of annual precipitation is important for many applications in hydrology, climatology, agronomy, ecology and other environmental sciences. In this study, we compared five different statistical methods to predict spatially the average annual precipitation of Turkey using point observations of annual precipitation at meteorological stations and spatially exhaustive covariate data (i.e. elevation, aspect, surface roughness, distance to coast, land use and eco-region). The methods compared were multiple linear regression (MLR), ordinary kriging (OK), regression kriging (RK), universal kriging (UK), and geographically weighted regression (GWR). Average annual precipitation of Turkey from 1970 to 2006 was measured at 225 meteorological stations that are fairly uniformly distributed across the country, with a somewhat higher spatial density along the coastline. The observed annual precipitation varied between 255 mm and 2209 mm with an average of 628 mm. The annual precipitation was highest along the southern and northern coasts and low in the centre of the country, except for the area near the Van Lake, Keban and Ataturk Dams. To compare the performance of the interpolation techniques the total dataset was first randomly split in ten equally sized test datasets. Next, for each test data set the remaining 90% of the data comprised the training dataset. Each training dataset was then used to calibrate and apply the spatial prediction model. Predictions at the test dataset locations were compared with the observed test data. Validation was done by calculating the Root Mean Squared Error (RMSE), R-square and Standardized MSE (SMSE) values. According to these criteria, universal kriging is the most accurate with an RMSE of 178 mm, an R-square of 0.61 and an SMSE of 1.06, whilst multiple linear regression performed worst (RMSE of 222 mm, R-square of 0.39, and SMSE of 1.44). Ordinary kriging, UK using only elevation and geographically

  9. Inter-comparison of radar rainfall rate using Constant Altitude Plan Position Indicator and hybrid surface rainfall maps

    NASA Astrophysics Data System (ADS)

    Kwon, Soohyun; Jung, Sung-Hwa; Lee, GyuWon

    2015-12-01

    Ground clutter and beam blockage caused by complex terrain deteriorates the accuracy of radar quantitative precipitation estimations (QPE). To improve radar QPE, we have developed a technique for radar rainfall estimation, the Kyungpook National University Hybrid Surface Rainfall (KHSR), based on a two-dimensional hybrid surface consisting of the lowest radar bins that are immune to ground clutter, beam blockage, and non-meteorological echoes. The KHSR map is a composite of a ground echo mask, a beam blockage mask, and a rain echo mask, and it was applied to an operational S-band dual-polarimetric radar that scans six PPIs at a low elevation angle every 2.5 min. By using three rainfall estimators, R(ZH), R(ZH, ZDR), and R(ZH, ξDR), this technique was compared with an operational Constant Altitude Plan Position Indicator (CAPPI) QPE of the Korea Meteorological Administration during a summer season from June-August 2012. In comparison with CAPPI, KHSR shows improved rainfall estimates for three algorithms, and it was more effective with dual-polarimetric rainfall algorithms than with single polarimetric rainfall algorithms. Error increased with increasing range from radar, but this increase was more rapid using CAPPI than using KHSR. KHSR using the R(ZH, ZDR) algorithm was the most accurate long range (>100 km from the radar) estimator.

  10. A comparison of methods used in mapping of Pleistocene-bedrock unconformity: Conventional manual versus surface modeling

    SciTech Connect

    Weibel, C.P.; Abert, C.C.; Kempton, J.P. )

    1993-03-01

    Surface modeling software packages allow geologists to model and map topographic and stratigraphic horizons. These map products, however, often differ from maps prepared without computerized mapping. The authors mapping of the Pleistocene-bedrock unconformity in east-central Illinois (1:100,000-scale), which includes the Mahomet paleovalley, illustrates this situation and demonstrates how both mapping methods, manual and computer, contribute to a better understanding of the paleovalley. A conventional hand-drawn map was constructed over a number of years by manually plotting and contouring bedrock elevations, primarily from water well logs, onto various county and local topographic bases. A computer-generated map of the same area was completed as part of a recent project to map the bedrock geology. It was prepared by carefully selecting data, which included geographic coordinates, unique well identification numbers, and bedrock elevations. Primary data sources were hydrocarbon exploration and storage wells. Digitizing the hand-drawn map allowed the two maps to be overlaid and compared. Several significant geomorphic features appeared on one map and not the other because of the use of different databases and inconsistent selection of data used for the hand-drawn map. The hand-drawn map appears more realistic, i.e., like a modern surface, because the mappers used their knowledge of geomorphic concepts in drawing the contours. Most of the data selection for the computer-generated map was completed prior to plotting of the map and therefore is less susceptible to bias interpretations. The computer-generated map, however, is less topographically realistic in areas where data are sparse because the extrapolation methods used to define the surface do not recognize geologic processes or bedrock lithology.

  11. Individualized Education Programs: A Comparison of Students with BD, LD, and MMR.

    ERIC Educational Resources Information Center

    Nickles, James L.; And Others

    1992-01-01

    This study examined the categories of objectives in the Individualized Education Programs of children with behavior disorders, learning disabilities, or mild mental retardation in five states. The study found differences among disability groups in objective categories (academic, career/vocational, behavior, and basic living skills) but less…

  12. Mapping soil water content under sparse vegetation and changeable sky conditions: comparison of two thermal inertia approaches

    NASA Astrophysics Data System (ADS)

    Maltese, Antonino; Capodici, Fulvio; Ciraolo, Giuseppe; La Loggia, Goffredo

    2013-01-01

    A critical analysis of a thermal inertia approach to map surface soil water content on bare and sparsely vegetated soils by means of remotely sensed data is reported. The study area is an experimental field located in Barrax, Spain. In situ data were acquired within the Barrax 2011 research project. An advanced hyperspectral scanner airborne imager provides images in the visible/near-infrared and thermal infrared bands. Images were acquired both in day and night times by the Instituto Nacional de Técnica Aeroespacial between 12th and 13th of June 2011. The scene covers a corn irrigation pivot surrounded by bare soil, where a set of in situ data have been collected both previously and simultaneously to overpasses. To validate remotely sensed estimations, an ad hoc dataset has been produced by measuring spectra, radiometric temperatures, surface soil water content, and soil thermal properties. These data were collected on two transects covering bare and sparsely vegetated soils. This ground dataset was used (1) to verify if a thermal inertia method can be applied to map the water content on soil covered by sparse vegetation and (2) to quantify a correction factor accounting for solar radiation reduction due to sky cloudiness. The experiment intended to test a spatially constant and a spatially distributed approach to estimate the phase difference. Both methods were then applied to the airborne images collected during the following days to obtain the spatial distribution of surface soil water content. Results confirm that the thermal inertia method can be applied to sparsely vegetated soil characterized by low fractional cover if the solar radiation reaching the ground is accurately estimated. A spatially constant value of the phase difference allows a good assessment of thermal inertia, whereas the comparison with the three-temperature approach did not give conclusive responses. Results also show that clear sky, only at the time of the acquisition, does not provide

  13. Chemical and mineralogical characterizations of LD converter steel slags: A multi-analytical techniques approach

    SciTech Connect

    Waligora, J.; Bulteel, D.; Degrugilliers, P.; Damidot, D.; Potdevin, J.L.; Measson, M.

    2010-01-15

    The use of LD converter steel slags (coming from Linz-Donawitz steelmaking process) as aggregates in road construction can in certain cases lead to dimensional damage due to a macroscopic swelling that is the consequence of chemical reactions. The aim of this study was to couple several analytical techniques in order to carefully undertake chemical and mineralogical characterizations of LD steel slags and identify the phases that are expected to be responsible for their instability. Optical microscopy, scanning electron microscopy and electron probe microanalyses revealed that LD steel slags mainly contain calcium silicates, dicalcium ferrites, iron oxides and lime. However, as a calcium silicate phase is heterogeneous, Raman microspectrometry and transmitted electron microscopy had to be used to characterize it more precisely. Results showed that lime is present under two forms in slag grains: some nodules observed in the matrix whose size ranges from 20 to 100 {mu}m and some micro-inclusions, enclosed in the heterogeneous calcium silicate phase whose size ranges from 1 to 3 {mu}m. It was also established that without the presence of magnesia, lime is expected to be the only phase responsible for LD steel slags instability. Nevertheless, the distribution of lime between nodules and micro-inclusions may play a major role and could explain that similar amounts of lime can induce different instabilities. Thus, it appears that lime content of LD steel slags is not the only parameter to explain their instability.

  14. Dengue Virus Capsid Protein Binding to Hepatic Lipid Droplets (LD) Is Potassium Ion Dependent and Is Mediated by LD Surface Proteins

    PubMed Central

    Carvalho, Filomena A.; Carneiro, Fabiana A.; Martins, Ivo C.; Assunção-Miranda, Iranaia; Faustino, André F.; Pereira, Renata M.; Bozza, Patricia T.; Castanho, Miguel A. R. B.; Mohana-Borges, Ronaldo; Da Poian, Andrea T.

    2012-01-01

    Dengue virus (DENV) affects millions of people, causing more than 20,000 deaths annually. No effective treatment for the disease caused by DENV infection is currently available, partially due to the lack of knowledge on the basic aspects of the viral life cycle, including the molecular basis of the interaction between viral components and cellular compartments. Here, we characterized the properties of the interaction between the DENV capsid (C) protein and hepatic lipid droplets (LDs), which was recently shown to be essential for the virus replication cycle. Zeta potential analysis revealed a negative surface charge of LDs, with an average surface charge of −19 mV. The titration of LDs with C protein led to an increase of the surface charge, which reached a plateau at +13.7 mV, suggesting that the viral protein-LD interaction exposes the protein cationic surface to the aqueous environment. Atomic force microscopy (AFM)-based force spectroscopy measurements were performed by using C protein-functionalized AFM tips. The C protein-LD interaction was found to be strong, with a single (un)binding force of 33.6 pN. This binding was dependent on high intracellular concentrations of potassium ions but not sodium. The inhibition of Na+/K+-ATPase in DENV-infected cells resulted in the dissociation of C protein from LDs and a 50-fold inhibition of infectious virus production but not of RNA replication, indicating a biological relevance for the potassium-dependent interaction. Limited proteolysis of the LD surface impaired the C protein-LD interaction, and force measurements in the presence of specific antibodies indicated that perilipin 3 (TIP47) is the major DENV C protein ligand on the surface of LDs. PMID:22130547

  15. Lymantria dispar iflavirus 1 (LdIV1), a new model to study iflaviral persistence in lepidopterans.

    PubMed

    Carrillo-Tripp, Jimena; Krueger, Elizabeth N; Harrison, Robert L; Toth, Amy L; Miller, W Allen; Bonning, Bryony C

    2014-10-01

    The cell line IPLB-LD-652Y, derived from the gypsy moth (Lymantria dispar L.), is routinely used to study interactions between viruses and insect hosts. Here we report the full genome sequence and biological characteristics of a small RNA virus, designated Lymantria dispar iflavirus 1 (LdIV1), that was discovered to persistently infect IPLB-LD-652Y. LdIV1 belongs to the genus Iflavirus. LdIV1 formed icosahedral particles of approx. 30 nm in diameter and contained a 10, 044 nt polyadenylated, positive-sense RNA genome encoding a predicted polyprotein of 2980 aa. LdIV1 was induced by a viral suppressor of RNA silencing, suggesting that acute infection is restricted by RNA interference (RNAi). We detected LdIV1 in all tested tissues of gypsy-moth larvae and adults, but the virus was absent from other L. dispar-derived cell lines. We confirmed LdIV1 infectivity in two of these cell lines (IPLB-LD-652 and IPLB-LdFB). Our results provide a novel system to explore persistent infections in lepidopterans and a new model for the study of iflaviruses, a rapidly expanding group of viruses, many of which covertly infect their hosts. PMID:24986084

  16. Comparison of ASTER- and AVIRIS-Derived Mineraland Vegetation Maps of the White Horse Replacement Alunite Deposit and Surrounding Area, Marysvale Volcanic Field, Utah

    USGS Publications Warehouse

    Rockwell, Barnaby W.

    2009-01-01

    This report presents and compares mineral and vegetation maps of parts of the Marysvale volcanic field in west-central Utah that were published in a recent paper describing the White Horse replacement alunite deposit. Detailed, field-verified maps of the deposit were produced from Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data acquired from a low-altitude Twin Otter turboprop airborne platform. Reconnaissance-level maps of surrounding areas including the central and northern Tushar Mountains, Pahvant Range, and portions of the Sevier Plateau to the east were produced from visible, near-infrared, and shortwave-infrared data acquired by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor carried aboard the Terra satellite platform. These maps are also compared to a previously published mineral map of the same area generated from AVIRIS data acquired from the high-altitude NASA ER-2 jet platform. All of the maps were generated by similar analysis methods, enabling the direct comparison of the spatial scale and mineral composition of surface geologic features that can be identified using the three types of remote sensing data. The high spatial (2-17 meter) and spectral (224 bands) resolution AVIRIS data can be used to generate detailed mineral and vegetation maps suitable for geologic and geoenvironmental studies of individual deposits, mines, and smelters. The lower spatial (15-30 meter) and spectral (9 bands) resolution ASTER data are better suited to less detailed mineralogical studies of lithology and alteration across entire hydrothermal systems and mining districts, including regional mineral resource and geoenvironmental assessments. The results presented here demonstrate that minerals and mineral mixtures can be directly identified using AVIRIS and ASTER data to elucidate spatial patterns of mineralogic zonation; AVIRIS data can enable the generation of maps with significantly greater detail and accuracy. The

  17. Knockdown of a nutrient amino acid transporter gene LdNAT1 reduces free neutral amino acid contents and impairs Leptinotarsa decemlineata pupation

    PubMed Central

    Fu, Kai-Yun; Guo, Wen-Chao; Ahmat, Tursun; Li, Guo-Qing

    2015-01-01

    A Leptinotarsa decemlineata SLC6 NAT gene (LdNAT1) was cloned. LdNAT1 was highly expressed in the larval alimentary canal especially midgut. LdNAT1 mRNA levels were high right after the molt and low just before the molt. JH and a JH analog pyriproxyfen activated LdNAT1 expression. RNAi of an allatostatin gene LdAS-C increased JH and upregulated LdNAT1 transcription. Conversely, silencing of a JH biosynthesis gene LdJHAMT decreased JH and reduced LdNAT1 expression. Moreover, 20E and an ecdysteroid agonist halofenozide repressed LdNAT1 expression, whereas a decrease in 20E by RNAi of an ecdysteroidogenesis gene LdSHD and disruption of 20E signaling by knockdown of LdE75 and LdFTZ-F1 activated LdNAT1 expression. Thus, LdNAT1 responded to both 20E and JH. Moreover, knockdown of LdNAT1 reduced the contents of cysteine, histidine, isoleucine, leucine, methionine, phenylalanine and serine in the larval bodies and increased the contents of these amino acids in the larval feces. Furthermore, RNAi of LdNAT1 inhibited insulin/target of rapamycin pathway, lowered 20E and JH titers, reduced 20E and JH signaling, retarded larval growth and impaired pupation. These data showed that LdNAT1 was involved in the absorption of several neutral amino acids critical for larval growth and metamorphosis. PMID:26657797

  18. Comorbidity of LD and ADHD: implications of DSM-5 for assessment and treatment.

    PubMed

    DuPaul, George J; Gormley, Matthew J; Laracy, Seth D

    2013-01-01

    Attention-deficit/hyperactivity disorder (ADHD) and learning disability (LD) can co-occur for a significant minority of children with each disorder. A total of 17 studies (2001-2011) examining ADHD-LD comorbidity were reviewed, revealing a higher mean comorbidity rate (45.1%) than has been obtained previously. Higher comorbidity may be the result of including students with writing disorders, not just reading and/or math disabilities. Proposed DSM-5 criteria for both disorders will likely affect comorbidity rates; however, it is unclear whether such rates will increase or decrease. Regardless of the specific impact of DSM revisions, academic skill and/or performance deficits should be assessed for students with ADHD as part of screening, comprehensive evaluation, and treatment monitoring. Comprehensive intervention services for students with comorbid ADHD and LD will require empirically supported treatment strategies that address both disorders and that are implemented across school and home settings. PMID:23144063

  19. The impact of the Flynn effect on LD diagnoses in special education.

    PubMed

    Kanaya, Tomoe; Ceci, Stephen

    2012-01-01

    Because of the Flynn effect, IQ scores rise as a test norm ages but drop on the introduction of a newly revised test norm. The purpose of the current study was to determine the impact of the Flynn effect on learning disability (LD) diagnoses, the most prevalent special education diagnosis in the United States. Using a longitudinal sample of 875 school children who were initially diagnosed with LD on the Wechsler Intelligence Scale for Children-Revised (WISC-R), children experienced a significant decline in IQ when retested on the third edition of the WISC (WISC-III) compared to peers who were tested on the WISC-R twice. Furthermore, results from logistic regression analyses revealed that the probability of a rediagnosis of LD on reevaluation significantly decreased, in part, because of this decline on the WISC-III. These results are discussed in terms of their implications for both basic research and educational policy. PMID:21193595

  20. LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

    PubMed

    Bulik-Sullivan, Brendan K; Loh, Po-Ru; Finucane, Hilary K; Ripke, Stephan; Yang, Jian; Patterson, Nick; Daly, Mark J; Price, Alkes L; Neale, Benjamin M

    2015-03-01

    Both polygenicity (many small genetic effects) and confounding biases, such as cryptic relatedness and population stratification, can yield an inflated distribution of test statistics in genome-wide association studies (GWAS). However, current methods cannot distinguish between inflation from a true polygenic signal and bias. We have developed an approach, LD Score regression, that quantifies the contribution of each by examining the relationship between test statistics and linkage disequilibrium (LD). The LD Score regression intercept can be used to estimate a more powerful and accurate correction factor than genomic control. We find strong evidence that polygenicity accounts for the majority of the inflation in test statistics in many GWAS of large sample size. PMID:25642630

  1. A Comparison of Satellite-Derived Snow Maps with a Focus on Ephemeral Snow in North Carolina

    NASA Technical Reports Server (NTRS)

    Hall, Dorothy K.; Fuhrmann, Christopher M.; Perry, L. Baker; Riggs, George A.; Robinson, David A.; Foster, James L.

    2010-01-01

    In this paper, we focus on the attributes and limitations of four commonly-used daily snowcover products with respect to their ability to map ephemeral snow in central and eastern North Carolina. We show that the Moderate-Resolution Imaging Spectroradiometer (MODIS) fractional snow-cover maps can delineate the snow-covered area very well through the use of a fully-automated algorithm, but suffer from the limitation that cloud cover precludes mapping some ephemeral snow. The semi-automated Interactive Multi-sensor Snow and ice mapping system (IMS) and Rutgers Global Snow Lab (GSL) snow maps are often able to capture ephemeral snow cover because ground-station data are employed to develop the snow maps, The Rutgers GSL maps are based on the IMS maps. Finally, the Advanced Microwave Scanning Radiometer for EOS (AMSR-E) provides some good detail of snow-water equivalent especially in deeper snow, but may miss ephemeral snow cover because it is often very thin or wet; the AMSR-E maps also suffer from coarse spatial resolution. We conclude that the southeastern United States represents a good test region for validating the ability of satellite snow-cover maps to capture ephemeral snow cover,

  2. Thinking Maps Enhance Metaphoric Competence in Children with Autism and Learning Disabilities

    ERIC Educational Resources Information Center

    Mashal, Nira; Kasirer, Anat

    2011-01-01

    The primary goal of the current study was to examine the ability of children with autism (ASD) and children with learning disabilities (LD) to improve their metaphoric competence by an intervention program using "thinking maps". Twenty ASD children, 20 LD, and 20 typically developed (TD) children were tested on metaphors and idioms comprehension…

  3. Cost, accuracy, and consistency comparisons of land use maps made from high-altitutde aircraft photography and ERTS imagery

    USGS Publications Warehouse

    Fitzpatrick, Katherine A.

    1975-01-01

    Accuracy analyses for the land use maps of the Central Atlantic Regional Ecological Test Site were performed for a 1-percent sample of the area. Researchers compared Level II land use maps produced at three scales, 1:24,000, 1:100,000, and 1:250,000 from high-altitude photography, with each other and with point data obtained in the field. They employed the same procedures to determine the accuracy of the Level I land use maps produced at 1:250,000 from high-altitude photography and color composite ERTS imagery. The accuracy of the Level II maps was 84.9 percent at 1:24,000, 77.4 percent at 1:100,000, and 73.0 percent at 1:250,000. The accuracy of the Level I 1:250,000 maps produced from high-altitude aircraft photography was 76.5 percent and for those produced from ERTS imagery was 69.5 percent The cost of Level II land use mapping at 1:24,000 was found to be high ($11.93 per km2 ). The cost of mapping at 1:100,000 ($1.75) was about 2 times as expensive as mapping at 1:250,000 ($.88), and the accuracy increased by only 4.4 percent. Level I land use maps, when mapped from highaltitude photography, were about 4 times as expensive as the maps produced from ERTS imagery, although the accuracy is 7.0 percent greater. The Level I land use category that is least accurately mapped from ERTS imagery is urban and built-up land in the non-urban areas; in the urbanized areas, built-up land is more reliably mapped.

  4. High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly

    PubMed Central

    Prasad, Aparna; Schiex, Thomas; McKay, Stephanie; Murdoch, Brenda; Wang, Zhiquan; Womack, James E; Stothard, Paul; Moore, Stephen S

    2007-01-01

    Background High resolution radiation hybrid (RH) maps can facilitate genome sequence assembly by correctly ordering genes and genetic markers along chromosomes. The objective of the present study was to generate high resolution RH maps of bovine chromosomes 19 (BTA19) and 29 (BTA29), and compare them with the current 7.1X bovine genome sequence assembly (bovine build 3.1). We have chosen BTA19 and 29 as candidate chromosomes for mapping, since many Quantitative Trait Loci (QTL) for the traits of carcass merit and residual feed intake have been identified on these chromosomes. Results We have constructed high resolution maps of BTA19 and BTA29 consisting of 555 and 253 Single Nucleotide Polymorphism (SNP) markers respectively using a 12,000 rad whole genome RH panel. With these markers, the RH map of BTA19 and BTA29 extended to 4591.4 cR and 2884.1 cR in length respectively. When aligned with the current bovine build 3.1, the order of markers on the RH map for BTA19 and 29 showed inconsistencies with respect to the genome assembly. Maps of both the chromosomes show that there is a significant internal rearrangement of the markers involving displacement, inversion and flips within the scaffolds with some scaffolds being misplaced in the genome assembly. We also constructed cattle-human comparative maps of these chromosomes which showed an overall agreement with the comparative maps published previously. However, minor discrepancies in the orientation of few homologous synteny blocks were observed. Conclusion The high resolution maps of BTA19 (average 1 locus/139 kb) and BTA29 (average 1 locus/208 kb) presented in this study suggest that by the incorporation of RH mapping information, the current bovine genome sequence assembly can be significantly improved. Furthermore, these maps can serve as a potential resource for fine mapping QTL and identification of causative mutations underlying QTL for economically important traits. PMID:17784962

  5. Comparison of Northern Ireland radon maps based on indoor radon measurements and geology with maps derived by predictive modelling of airborne radiometric and ground permeability data.

    PubMed

    Appleton, J D; Miles, J C H; Young, M

    2011-03-15

    Publicly available information about radon potential in Northern Ireland is currently based on indoor radon results averaged over 1-km grid squares, an approach that does not take into account the geological origin of the radon. This study describes a spatially more accurate estimate of the radon potential of Northern Ireland using an integrated radon potential mapping method based on indoor radon measurements and geology that was originally developed for mapping radon potential in England and Wales. A refinement of this method was also investigated using linear regression analysis of a selection of relevant airborne and soil geochemical parameters from the Tellus Project. The most significant independent variables were found to be eU, a parameter derived from airborne gamma spectrometry measurements of radon decay products in the top layer of soil and exposed bedrock, and the permeability of the ground. The radon potential map generated from the Tellus data agrees in many respects with the map based on indoor radon data and geology but there are several areas where radon potential predicted from the airborne radiometric and permeability data is substantially lower. This under-prediction could be caused by the radon concentration being lower in the top 30 cm of the soil than at greater depth, because of the loss of radon from the surface rocks and soils to air. PMID:21310464

  6. The Effectiveness of Concept Maps in Teaching Physics Concepts Applied to Engineering Education: Experimental Comparison of the Amount of Learning Achieved With and Without Concept Maps

    NASA Astrophysics Data System (ADS)

    Martínez, Guadalupe; Pérez, Ángel Luis; Suero, María Isabel; Pardo, Pedro J.

    2013-04-01

    A study was conducted to quantify the effectiveness of concept maps in learning physics in engineering degrees. The following research question was posed: What was the difference in learning results from the use of concept maps to study a particular topic in an engineering course? The study design was quasi-experimental and used a post-test as a measuring instrument. The sample included 114 university students from the School of Industrial Engineering who were divided into two equivalent homogeneous groups of 57 students each. The amount of learning attained by the students in each group was compared, with the independent variable being the teaching method; the experimental group (E.G.) used concept maps, while the control group (C.G.) did not. We performed a crossover study with the two groups of students, with one group acting as the E.G. for the topic of optical fibers and as the C.G. for the topic of the fundamental particles of matter and vice versa for the other group. For each of the two topics studied, the evaluation instrument was a test of 100 dichotomous items. The resulting data were subjected to a comparative statistical analysis, which revealed a significant difference in the amount of learning attained by the E.G. students as compared with the C.G. students. The results allow us to state that for the use of concept maps, the average increment in the E.G. students' learning was greater than 19 percentage points.

  7. A comparison of urban heat islands mapped using skin temperature, air temperature, and apparent temperature (Humidex), for the greater Vancouver area.

    PubMed

    Ho, Hung Chak; Knudby, Anders; Xu, Yongming; Hodul, Matus; Aminipouri, Mehdi

    2016-02-15

    Apparent temperature is more closely related to mortality during extreme heat events than other temperature variables, yet spatial epidemiology studies typically use skin temperature (also known as land surface temperature) to quantify heat exposure because it is relatively easy to map from satellite data. An empirical approach to map apparent temperature at the neighborhood scale, which relies on publicly available weather station observations and spatial data layers combined in a random forest regression model, was demonstrated for greater Vancouver, Canada. Model errors were acceptable (cross-validated RMSE=2.04 °C) and the resulting map of apparent temperature, calibrated for a typical hot summer day, corresponded well with past temperature research in the area. A comparison with field measurements as well as similar maps of skin temperature and air temperature revealed that skin temperature was poorly correlated with both air temperature (R(2)=0.38) and apparent temperature (R(2)=0.39). While the latter two were more similar (R(2)=0.87), apparent temperature was predicted to exceed air temperature by more than 5 °C in several urban areas as well as around the confluence of the Pitt and Fraser rivers. We conclude that skin temperature is not a suitable proxy for human heat exposure, and that spatial epidemiology studies could benefit from mapping apparent temperature, using an approach similar to the one reported here, to better quantify differences in heat exposure that exist across an urban landscape. PMID:26706765

  8. A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa.

    PubMed Central

    Choi, Hong-Kyu; Kim, Dongjin; Uhm, Taesik; Limpens, Eric; Lim, Hyunju; Mun, Jeong-Hwan; Kalo, Peter; Penmetsa, R Varma; Seres, Andrea; Kulikova, Olga; Roe, Bruce A; Bisseling, Ton; Kiss, Gyorgy B; Cook, Douglas R

    2004-01-01

    A core genetic map of the legume Medicago truncatula has been established by analyzing the segregation of 288 sequence-characterized genetic markers in an F(2) population composed of 93 individuals. These molecular markers correspond to 141 ESTs, 80 BAC end sequence tags, and 67 resistance gene analogs, covering 513 cM. In the case of EST-based markers we used an intron-targeted marker strategy with primers designed to anneal in conserved exon regions and to amplify across intron regions. Polymorphisms were significantly more frequent in intron vs. exon regions, thus providing an efficient mechanism to map transcribed genes. Genetic and cytogenetic analysis produced eight well-resolved linkage groups, which have been previously correlated with eight chromosomes by means of FISH with mapped BAC clones. We anticipated that mapping of conserved coding regions would have utility for comparative mapping among legumes; thus 60 of the EST-based primer pairs were designed to amplify orthologous sequences across a range of legume species. As an initial test of this strategy, we used primers designed against M. truncatula exon sequences to rapidly map genes in M. sativa. The resulting comparative map, which includes 68 bridging markers, indicates that the two Medicago genomes are highly similar and establishes the basis for a Medicago composite map. PMID:15082563

  9. Inviting Argument by Analogy: Analogical-Mapping-Based Comparison Activities as a Scaffold for Small-Group Argumentation

    ERIC Educational Resources Information Center

    Emig, Brandon R.; McDonald, Scott; Zembal-Saul, Carla; Strauss, Susan G.

    2014-01-01

    This study invited small groups to make several arguments by analogy about simple machines. Groups were first provided training on analogical (structure) mapping and were then invited to use analogical mapping as a scaffold to make arguments. In making these arguments, groups were asked to consider three simple machines: two machines that they had…

  10. The Impact of the Flynn Effect on LD Diagnoses in Special Education

    ERIC Educational Resources Information Center

    Kanaya, Tomoe; Ceci, Stephen

    2012-01-01

    Because of the Flynn effect, IQ scores rise as a test norm ages but drop on the introduction of a newly revised test norm. The purpose of the current study was to determine the impact of the Flynn effect on learning disability (LD) diagnoses, the most prevalent special education diagnosis in the United States. Using a longitudinal sample of 875…

  11. Perceptions of Adolescent Girls with LD Regarding Self-Determination and Postsecondary Transition Planning

    ERIC Educational Resources Information Center

    Trainor, Audrey A.

    2007-01-01

    Existing research has documented disparate outcomes between young women and men with disabilities in many transition domains, including employment, postsecondary education, and parenting. Similarly, students with learning disabilities (LD) have unique postsecondary transition needs. Promoting self-determination and active participation in…

  12. Orthographic Processing and Reading Comprehension among Arabic Speaking Mainstream and LD Children

    ERIC Educational Resources Information Center

    Elbeheri, Gad; Everatt, John; Mahfoudhi, Abdessatar; Al-Diyar, Mosaad Abu; Taibah, Nadia

    2011-01-01

    Two cohorts of mainstream children (grades 2-5) and one cohort of children with learning disabilities (LD; grades 3-5), all Arabic speaking children in Kuwait, were given measures of reading comprehension fluency and orthographic discrimination to assess the relationship between the two. Additional measures of phonological processing (decoding and…

  13. Mothers of Children with LD and ADHD: Empowerment through Online Communication

    ERIC Educational Resources Information Center

    Margalit, Malka; Raskind, Marshall H.

    2009-01-01

    Mothers of children with learning disabilities (LD) and Attention Deficit Hyperactivity Disorder (ADHD) were notified of the possibility that their online community was going to be closed. They immediately responded with messages about the significance of the community to their lives and distress that the site would not continue to be available.…

  14. Linear-dichroic infrared spectral (IR-LD) analysis of codeine and its derivatives

    NASA Astrophysics Data System (ADS)

    Koleva, Bojidarka; Kolev, Tsonko; Bakalska, Rumyana

    2007-05-01

    By means of IR-LD spectroscopy of oriented as suspension in nematic liquid crystal solids, a detailed IR-bands assignment and a stereo-structural prediction of codeine, codeinone and N-norcodeine have been carried out. The data are compared with known crystallographic ones of codeine and codeinone obtained by single crystal X-ray diffraction.

  15. Critical slowing down and critical exponents in LD/PIN optically-bistable semiconductor lasers

    SciTech Connect

    Zhong Lichen; Guo Yili

    1988-04-01

    Critical slowing down for LD/PIN bistable optical semiconductor lasers and the critical exponents ..gamma.. for this system have been experimentally investigated. The experimental value ..gamma..approx.0.53 is basically in agreement with the theoretically predicted value of 0.5.

  16. Pluralizing Methodologies in the Field of LD: From "What Works" to What Matters

    ERIC Educational Resources Information Center

    Ferri, Beth A.; Gallagher, Deborah; Connor, David J.

    2011-01-01

    The field of learning disabilities (LD) has a complex and complicated history. Tensions over definitions, eligibility criteria, service delivery models, and best practices, as well as epistemological debates, have been a part of that history from its inception. Given our collective struggles, as well as the current realities facing the field,…

  17. Mathematics Interventions for Students with Learning Disabilities (LD) in Secondary School: A Review of the Literature

    ERIC Educational Resources Information Center

    Myers, Jonté A.; Wang, Jun; Brownell, Mary T.; Gagnon, Joseph Calvin

    2015-01-01

    The purpose of our literature review was to extend and update Maccini, Mulcahy, and Wilson's (2007) review of the literature on mathematics interventions for secondary students with learning disabilities (LD). An extensive search of the research literature netted 15 research studies that focused on mathematics interventions for secondary students…

  18. The Emotional Exhaustion Aspect of Burnout and Stressors in Resource LD Teachers.

    ERIC Educational Resources Information Center

    Shea, Catherine A.

    This study sought to develop a clearer understanding of the correlates of the emotional exhaustion aspect of burnout among learning disabilities (LD) teachers in resource programs. Specifically, the study examined the relationship between the emotional aspect of burnout as measured by the Maslach Burnout Inventory (MBI) and: (1) background…

  19. The acute lethal dose 50 (LD50) of caffeine in albino rats.

    PubMed

    Adamson, Richard H

    2016-10-01

    An acute LD50 is a statistically derived amount of a substance that can be expected to cause death in 50% of the animals when given by a specified route as a single dose and the animals observed for a specified time period. Although conducting routine acute toxicity testing in rodents has been criticized, it can serve useful functions and also have practical implications. Material safety data sheets (MSDS) will reflect the acute toxicity of a substance and may require workers to wear protective gear, if appropriate, based on the LD50. There is no information in the scientific published literature which calculates a mean LD50 and standard deviation for caffeine administered orally to rats, using studies performed under good laboratory practice (GLP) or equivalent. This report does that and should be useful to manufacturers, packagers, transporters and regulators of this material. Using data from studies that are reproducible and reliable, the most accurate estimate of the acute LD50 of caffeine administered orally in male albino rats is hereby reported to be 367/mg/kg. PMID:27461039

  20. The Content-based Reading Approaches (COBRA) Model in the ELL and LD Classroom

    ERIC Educational Resources Information Center

    Lee, Pei-Yi

    2010-01-01

    The Content-based Reading Approaches (COBRA) framework, constructed by Heerman (2002), was made up of the instructional goals designed for reading-learning integrations in subject matter classrooms. ELL and LD students often fail to have sufficient reading skills to succeed within their different academic subjects, consequently it is important for…

  1. Comorbid LD and ADHD in Childhood: Socioemotional and Behavioural Adjustment and Parents' Positive and Negative Affect

    ERIC Educational Resources Information Center

    Al-Yagon, Michal

    2009-01-01

    The present study examined how vulnerability and protective factors at the individual level (child's disabilities; patterns of attachment), and at the family level (fathers'/mothers' affect), help explain differences in socioemotional and behavioural adjustment among children aged 8-12 years with comorbid learning disability (LD) and attention…

  2. Profiles of Elementary-Age English Language Learners with Reading-Related Learning Disabilities (LD) Identified as Speech and Language Impaired Prior to, at, or after Identification as LD

    ERIC Educational Resources Information Center

    McGhee, Belinda Maria Despujols

    2011-01-01

    This study examined the characteristics of 14 English Language Learners classified as having learning disabilities (LD) who were also identified as having speech and language impairments (SI) prior to, at, or after initial identification as LD. Data were collected under the auspices of a longitudinal study, Bilingual Exceptional Students:…

  3. A Stellar Dynamical Black Hole Mass for Broad-Lined Seyfert Galaxy NGC 6814 and Comparison to Results from Reverberation Mapping

    NASA Astrophysics Data System (ADS)

    Manne-Nicholas, Emily; Batiste, Merida; Valluri, Monica; Bentz, Misty C.; Onken, Christopher A.; Ferrarese, Laura

    2016-01-01

    We present a stellar dynamical mass for the supermassive black hole in the nearby (z=0.005) broad-lined Seyfert galaxy NGC 6814 and compare it to the published reverberation-based mass. NGC 6814 is only the third galaxy for which the comparison of these two techniques has been accomplished in the same galaxy. Though stellar dynamical modeling is currently thought to be the most direct way of measuring a SMBH mass, it is quite limited because it can only be performed on nearby galaxies that have a spatially resolvable (or nearly so) black hole gravitational sphere of influence. In contrast, reverberation mapping, which relies on time resolution and not spatial resolution, can be used to constrain black hole masses in even the most distant quasars. Reverberation masses, however, carry with them an uncertainty based on the unknown geometry of the photoionized broad line region. This uncertainty affects our ability to accurately measure masses of AGN not just for reverberation masses, but also for the thousands of masses that rely on the reverberation sample for their calibration. This comparison of the mass of the central supermassive black hole in NGC 6814 using both stellar dynamical and reverberation mapping techniques is part of a larger effort to directly compare these techniques in several galaxies. The more galaxies for which this comparison can be performed, the better we will be able to understand the scatter and potential biases in black hole masses and therefore supermassive black hole evolution across cosmic time.

  4. An automated land-use mapping comparison of the Bayesian maximum likelihood and linear discriminant analysis algorithms

    NASA Technical Reports Server (NTRS)

    Tom, C. H.; Miller, L. D.

    1984-01-01

    The Bayesian maximum likelihood parametric classifier has been tested against the data-based formulation designated 'linear discrimination analysis', using the 'GLIKE' decision and "CLASSIFY' classification algorithms in the Landsat Mapping System. Identical supervised training sets, USGS land use/land cover classes, and various combinations of Landsat image and ancilliary geodata variables, were used to compare the algorithms' thematic mapping accuracy on a single-date summer subscene, with a cellularized USGS land use map of the same time frame furnishing the ground truth reference. CLASSIFY, which accepts a priori class probabilities, is found to be more accurate than GLIKE, which assumes equal class occurrences, for all three mapping variable sets and both levels of detail. These results may be generalized to direct accuracy, time, cost, and flexibility advantages of linear discriminant analysis over Bayesian methods.

  5. Geological Mapping of the North Polar Region of Venus (V-1 Snegurochka Planitia): Significant Problems and Comparisons to the Earth's Archean

    NASA Technical Reports Server (NTRS)

    Head, James W.; Hurwitz, D. M.; Ivanov, M. A.; Basilevsky, A. T.; Kumar, P. Senthil

    2008-01-01

    The geological features, structures, thermal conditions, interpreted processes, and outstanding questions related to both the Earth's Archean and Venus share many similarities and we are using a problem-oriented approach to Venus mapping, guided by perspectives from the Archean record of the Earth, to gain new insight into both. The Earth's preserved and well-documented Archean record provides important insight into high heat-flux tectonic and magmatic environments and structures and Venus reveals the current configuration and recent geological record of analogous high-temperature environments unmodified by subsequent several billion years of segmentation and overprinting, as on Earth. We have problems on which progress might be made through comparison. Here we present the major goals of the geological mapping of the V-1 Snegurochka Planitia Quadrangle, and themes that could provide important insights into both planets:

  6. A comparison of top-down and bottom-up approaches to benthic habitat mapping to inform offshore wind energy development

    NASA Astrophysics Data System (ADS)

    LaFrance, Monique; King, John W.; Oakley, Bryan A.; Pratt, Sheldon

    2014-07-01

    Recent interest in offshore renewable energy within the United States has amplified the need for marine spatial planning to direct management strategies and address competing user demands. To assist this effort in Rhode Island, benthic habitat classification maps were developed for two sites in offshore waters being considered for wind turbine installation. Maps characterizing and representing the distribution and extent of benthic habitats are valuable tools for improving understanding of ecosystem patterns and processes, and promoting scientifically-sound management decisions. This project presented the opportunity to conduct a comparison of the methodologies and resulting map outputs of two classification approaches, “top-down” and “bottom-up” in the two study areas. This comparison was undertaken to improve understanding of mapping methodologies and their applicability, including the bottom-up approach in offshore environments where data density tends to be lower, as well as to provide case studies for scientists and managers to consider for their own areas of interest. Such case studies can offer guidance for future work for assessing methodologies and translating them to other areas. The traditional top-down mapping approach identifies biological community patterns based on communities occurring within geologically defined habitat map units, under the concept that geologic environments contain distinct biological assemblages. Alternatively, the bottom-up approach aims to establish habitat map units centered on biological similarity and then uses statistics to identify relationships with associated environmental parameters and determine habitat boundaries. When applied to the two study areas, both mapping approaches produced habitat classes with distinct macrofaunal assemblages and each established statistically strong and significant biotic-abiotic relationships with geologic features, sediment characteristics, water depth, and/or habitat

  7. Using Prompt Fading to Teach Self-Questioning to Fifth Graders with LD: Effects on Reading Comprehension

    ERIC Educational Resources Information Center

    Rouse, Christina A.; Alber-Morgan, Sheila R.; Cullen, Jennifer M.; Sawyer, Mary

    2014-01-01

    Students with LD who struggle with reading comprehension can benefit from instruction on how to read strategically. One strategy that has been demonstrated to increase reading comprehension is self-questioning. In this study, two fifth graders with LD were taught to self-generate questions using a prompt fading procedure. The participants were…

  8. Lymantria dispar iflavirus 1 (LdIV1), a new model to study iflaviral persistence in lepidopterans

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The cell line IPLB-LD-652Y derived from the gypsy moth (Lymantria dispar, Linn.) is routinely used to study insect virus-host interactions. Here we report the full genome sequence and biological characteristics of a small RNA virus, designated Lymantria dispar iflavirus 1 (LdIV1), that was discovere...

  9. Impact of the Personal Strengths Program on Self-Determination Levels of College Students with LD and/or ADHD

    ERIC Educational Resources Information Center

    Farmer, Jennie L.; Allsopp, David H.; Ferron, John M.

    2015-01-01

    This study investigates the impact of The Personal Strengths Program (PSP) on seven college students with learning disabilities and/or attention deficit hyperactivity disorder (LD/ADHD) using a multiple baseline design. Students with LD/ADHD experience increased challenges in school settings and decreased post-secondary outcomes when compared with…

  10. A Multi-Trait, Multi-Method Analysis of the Bayesian Screening Instrument and Test Battery for LD Adolescents.

    ERIC Educational Resources Information Center

    Alley, Gordon R.; And Others

    The reliability and validity of the Modified Component Disability Checklist were examined with five secondary learning disabled (LD) teachers, 21 low achieving students, and 21 LD students in grades 7, 8, and 9. During Phase I, teachers matched the component disability to the target behavior; and in Phase II teachers were told to judge each target…