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Sample records for literature analysis cross-validation

  1. Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb

    PubMed Central

    Nagel, Kevin; Jimeno-Yepes, Antonio; Rebholz-Schuhmann, Dietrich

    2009-01-01

    Background A protein annotation database, such as the Universal Protein Resource knowledge base (UniProtKb), is a valuable resource for the validation and interpretation of predicted 3D structure patterns in proteins. Existing studies have focussed on point mutation extraction methods from biomedical literature which can be used to support the time consuming work of manual database curation. However, these methods were limited to point mutation extraction and do not extract features for the annotation of proteins at the residue level. Results This work introduces a system that identifies protein residues in MEDLINE abstracts and annotates them with features extracted from the context written in the surrounding text. MEDLINE abstract texts have been processed to identify protein mentions in combination with taxonomic species and protein residues (F1-measure 0.52). The identified protein-species-residue triplets have been validated and benchmarked against reference data resources (UniProtKb, average F1-measure of 0.54). Then, contextual features were extracted through shallow and deep parsing and the features have been classified into predefined categories (F1-measure ranges from 0.15 to 0.67). Furthermore, the feature sets have been aligned with annotation types in UniProtKb to assess the relevance of the annotations for ongoing curation projects. Altogether, the annotations have been assessed automatically and manually against reference data resources. Conclusion This work proposes a solution for the automatic extraction of functional annotation for protein residues from biomedical articles. The presented approach is an extension to other existing systems in that a wider range of residue entities are considered and that features of residues are extracted as annotations. PMID:19758468

  2. Application of Discriminant Analysis and Cross-Validation on Proteomics Data.

    PubMed

    Kuligowski, Julia; Pérez-Guaita, David; Quintás, Guillermo

    2016-01-01

    High-throughput proteomic experiments have raised the importance and complexity of bioinformatic analysis to extract useful information from raw data. Discriminant analysis is frequently used to identify differences among test groups of individuals or to describe combinations of discriminant variables. However, even in relatively large studies, the number of detected variables typically largely exceeds the number of samples and the classifiers should be thoroughly validated to assess their performance for new samples. Cross-validation is a widely approach when an external validation set is not available. In this chapter, different approaches for cross-validation are presented including relevant aspects that should be taken into account to avoid overly optimistic results and the assessment of the statistical significance of cross-validated figures of merit. PMID:26519177

  3. Exact Analysis of Squared Cross-Validity Coefficient in Predictive Regression Models

    ERIC Educational Resources Information Center

    Shieh, Gwowen

    2009-01-01

    In regression analysis, the notion of population validity is of theoretical interest for describing the usefulness of the underlying regression model, whereas the presumably more important concept of population cross-validity represents the predictive effectiveness for the regression equation in future research. It appears that the inference…

  4. Cross Validation and Discriminative Analysis Techniques in a College Student Attrition Application.

    ERIC Educational Resources Information Center

    Smith, Alan D.

    1982-01-01

    Used a current attrition study to show the usefulness of discriminative analysis and a cross validation technique applied to student nonpersister questionnaire respondents and nonrespondents. Results of the techniques allowed delineation of several areas of sample under-representation and established the instability of the regression weights…

  5. Cross-validation analysis of bias models in Bayesian multi-model projections of climate

    NASA Astrophysics Data System (ADS)

    Huttunen, J. M. J.; Räisänen, J.; Nissinen, A.; Lipponen, A.; Kolehmainen, V.

    2016-05-01

    Climate change projections are commonly based on multi-model ensembles of climate simulations. In this paper we consider the choice of bias models in Bayesian multimodel predictions. Buser et al. (Clim Res 44(2-3):227-241, 2010a) introduced a hybrid bias model which combines commonly used constant bias and constant relation bias assumptions. The hybrid model includes a weighting parameter which balances these bias models. In this study, we use a cross-validation approach to study which bias model or bias parameter leads to, in a specific sense, optimal climate change projections. The analysis is carried out for summer and winter season means of 2 m-temperatures spatially averaged over the IPCC SREX regions, using 19 model runs from the CMIP5 data set. The cross-validation approach is applied to calculate optimal bias parameters (in the specific sense) for projecting the temperature change from the control period (1961-2005) to the scenario period (2046-2090). The results are compared to the results of the Buser et al. (Clim Res 44(2-3):227-241, 2010a) method which includes the bias parameter as one of the unknown parameters to be estimated from the data.

  6. Evaluating Processes, Parameters and Observations Using Cross Validation and Computationally Frugal Sensitivity Analysis Methods

    NASA Astrophysics Data System (ADS)

    Foglia, L.; Mehl, S.; Hill, M. C.

    2013-12-01

    Sensitivity analysis methods are used to identify measurements most likely to provide important information for model development and predictions and therefore identify critical processes. Methods range from computationally demanding Monte Carlo and cross-validation methods, to very computationally efficient linear methods. The methods are able to account for interrelations between parameters, but some argue that because linear methods neglect the effects of model nonlinearity, they are not worth considering when examining complex, nonlinear models of environmental systems. However, when faced with computationally demanding models needed to simulate, for example, climate change, the chance of obtaining fundamental insights (such as important and relationships between predictions and parameters) with few model runs is tempting. In the first part of this work, comparisons of local sensitivity analysis and cross-validation are conducted using a nonlinear groundwater model of the Maggia Valley, Southern Switzerland; sensitivity analysis are then applied to an integrated hydrological model of the same system where the impact of more processes and of using different sets of observations on the model results are considered; applicability to models of a variety of situations (climate, water quality, water management) is inferred. Results show that the frugal linear methods produced about 70% of the insight from about 2% of the model runs required by the computationally demanding methods. Regarding important observations, linear methods were not always able to distinguish between moderately and unimportant observations. However, they consistently identified the most important observations which are critical to characterize relationships between parameters and to assess the worth of potential new data collection efforts. Importance both to estimate parameters and predictions of interest was readily identified. The results suggest that it can be advantageous to consider local

  7. The Importance of Evaluating Whether Results Will Generalize: Application of Cross-Validation in Discriminant Analysis.

    ERIC Educational Resources Information Center

    Loftin, Lynn B.

    Cross-validation, an economical method for assessing whether sample results will generalize, is discussed in this paper. Cross-validation is an invariance technique that uses two subsets of the data sample to derive discriminant function coefficients. The two sets of coefficients are then used with each data subset to derive discriminant function…

  8. Airborne environmental endotoxin: a cross-validation of sampling and analysis techniques.

    PubMed Central

    Walters, M; Milton, D; Larsson, L; Ford, T

    1994-01-01

    A standard method for measurement of airborne environmental endotoxin was developed and field tested in a fiberglass insulation-manufacturing facility. This method involved sampling with a capillary-pore membrane filter, extraction in buffer using a sonication bath, and analysis by the kinetic-Limulus assay with resistant-parallel-line estimation (KLARE). Cross-validation of the extraction and assay method was performed by comparison with methanolysis of samples followed by 3-hydroxy fatty acid (3-OHFA) analysis by gas chromatography-mass spectrometry. Direct methanolysis of filter samples and methanolysis of buffer extracts of the filters yielded similar 3-OHFA content (P = 0.72); the average difference was 2.1%. Analysis of buffer extracts for endotoxin content by the KLARE method and by gas chromatography-mass spectrometry for 3-OHFA content produced similar results (P = 0.23); the average difference was 0.88%. The source of endotoxin was gram-negative bacteria growing in recycled washwater used to clean the insulation-manufacturing equipment. The endotoxin and bacteria become airborne during spray cleaning operations. The types of 3-OHFAs in bacteria cultured from the washwater, present in the washwater and in the air, were similar. Virtually all of the bacteria cultured from air and water were gram negative composed mostly of two species, Deleya aesta and Acinetobacter johnsonii. Airborne countable bacteria correlated well with endotoxin (r2 = 0.64). Replicate sampling showed that results with the standard sampling, extraction, and Limulus assay by the KLARE method were highly reproducible (95% confidence interval for endotoxin measurement +/- 0.28 log10). These results demonstrate the accuracy, precision, and sensitivity of the standard procedure proposed for airborne environmental endotoxin. PMID:8161191

  9. Cross-Validation.

    ERIC Educational Resources Information Center

    Langmuir, Charles R.

    1954-01-01

    Cross-validation in relation to choosing the best tests and selecting the best items in tests is discussed. Cross-validation demonstrated whether a decision derived from one set of data is truly effective when this decision is applied to another independent, but relevant, sample of people. Cross-validation is particularly important after…

  10. Statistical analysis of GeneMark performance by cross-validation.

    PubMed

    Kleffe, J; Hermann, K; Borodovsky, M

    1996-03-01

    We have explored the performance of the GeneMark gene identification method using cross-validation over learning samples of E. coli DNA sequences. The computations gave more accurate estimations of the error rates in comparison with previous results when a sample of non-coding regions was derived from GenBank sequences with many true coding regions unannotated. The error rate components have been classified and delineated. It was shown that the method performs differently on class I, II and III genes. The most frequent errors come from misinterpreting the coding potential of the complementary sequence in the same frame. The effects of stop-codons present in alternative frames were also studied to understand better the main factors contributing to GeneMark performance. PMID:16749185

  11. Cross-validation of the reduced form of the Food Craving Questionnaire-Trait using confirmatory factor analysis

    PubMed Central

    Iani, Luca; Barbaranelli, Claudio; Lombardo, Caterina

    2015-01-01

    Objective: The Food Craving Questionnaire-Trait (FCQ-T) is commonly used to assess habitual food cravings among individuals. Previous studies have shown that a brief version of this instrument (FCQ-T-r) has good reliability and validity. This article is the first to use Confirmatory factor analysis to examine the psychometric properties of the FCQ-T-r in a cross-validation study. Method: Habitual food cravings, as well as emotion regulation strategies, affective states, and disordered eating behaviors, were investigated in two independent samples of non-clinical adult volunteers (Sample 1: N = 368; Sample 2: N = 246). Confirmatory factor analyses were conducted to simultaneously test model fit statistics and dimensionality of the instrument. FCQ-T-r reliability was assessed by computing the composite reliability coefficient. Results: Analysis supported the unidimensional structure of the scale and fit indices were acceptable for both samples. The FCQ-T-r showed excellent reliability and moderate to high correlations with negative affect and disordered eating. Conclusion: Our results indicate that the FCQ-T-r scores can be reliably used to assess habitual cravings in an Italian non-clinical sample of adults. The robustness of these results is tested by a cross-validation of the model using two independent samples. Further research is required to expand on these findings, particularly in children and adolescents. PMID:25918510

  12. Latent Structure and Reliability Analysis of the Measure of Body Apperception: Cross-Validation for Head and Neck Cancer Patients

    PubMed Central

    Jean-Pierre, Pascal; Fundakowski, Christopher; Perez, Enrique; Jean-Pierre, Shadae E.; Jean-Pierre, Ashley R.; Melillo, Angelica B.; Libby, Rachel; Sargi, Zoukaa

    2014-01-01

    Purpose Cancer and its treatments are associated with psychological distress that can negatively impact self-perception, psychosocial functioning, and quality of life. Patients with Head and neck cancers (HNC) are particularly susceptible to psychological distress. This study involved a cross-validation of the Measure of Body Apperception (MBA) for HNC patients. Methods One hundred twenty-two English-fluent HNC patients between 20 and 88 years of age completed the MBA on a Likert scale ranging from “1=Disagree” to “4=Agree”. We assessed the latent structure and internal consistency reliability of the MBA using Principal Components Analysis (PCA) and Cronbach's coefficient alpha (α), respectively. We determined convergent and divergent validities of the MBA using correlations with the Hospital Anxiety and Depression Scale (HADS), observer disfigurement rating, and patients’ clinical and demographic variables. Results The PCA revealed a coherent set of items that explained 38% of the variance. The Keiser-Meyer-Olkin measure of sampling adequacy was .73 and the Bartlett's Test of Sphericity was statistically significant (χ2 (28) = 253.64; p < .001), confirming the suitability of the data for dimension reduction analysis. The MBA had good internal consistency reliability (α = .77) and demonstrated adequate convergent and divergent validities based on statistically significant moderate correlations with the HADS (p < .01) and observer rating of disfigurement (p < .026), and non-statistically significant correlations with patients’ clinical and demographic variables: tumor location, age at diagnosis, and birth place (all ps > .05). Conclusions The MBA is a valid and reliable screening measure of body apperception for HNC patients. PMID:22886430

  13. Cross-Validated Bagged Learning

    PubMed Central

    Petersen, Maya L.; Molinaro, Annette M.; Sinisi, Sandra E.; van der Laan, Mark J.

    2007-01-01

    Many applications aim to learn a high dimensional parameter of a data generating distribution based on a sample of independent and identically distributed observations. For example, the goal might be to estimate the conditional mean of an outcome given a list of input variables. In this prediction context, bootstrap aggregating (bagging) has been introduced as a method to reduce the variance of a given estimator at little cost to bias. Bagging involves applying an estimator to multiple bootstrap samples, and averaging the result across bootstrap samples. In order to address the curse of dimensionality, a common practice has been to apply bagging to estimators which themselves use cross-validation, thereby using cross-validation within a bootstrap sample to select fine-tuning parameters trading off bias and variance of the bootstrap sample-specific candidate estimators. In this article we point out that in order to achieve the correct bias variance trade-off for the parameter of interest, one should apply the cross-validation selector externally to candidate bagged estimators indexed by these fine-tuning parameters. We use three simulations to compare the new cross-validated bagging method with bagging of cross-validated estimators and bagging of non-cross-validated estimators. PMID:19255599

  14. Validity Evidence in Scale Development: The Application of Cross Validation and Classification-Sequencing Validation

    ERIC Educational Resources Information Center

    Acar, Tu¨lin

    2014-01-01

    In literature, it has been observed that many enhanced criteria are limited by factor analysis techniques. Besides examinations of statistical structure and/or psychological structure, such validity studies as cross validation and classification-sequencing studies should be performed frequently. The purpose of this study is to examine cross…

  15. Remote sensing and GIS-based landslide hazard analysis and cross-validation using multivariate logistic regression model on three test areas in Malaysia

    NASA Astrophysics Data System (ADS)

    Pradhan, Biswajeet

    2010-05-01

    This paper presents the results of the cross-validation of a multivariate logistic regression model using remote sensing data and GIS for landslide hazard analysis on the Penang, Cameron, and Selangor areas in Malaysia. Landslide locations in the study areas were identified by interpreting aerial photographs and satellite images, supported by field surveys. SPOT 5 and Landsat TM satellite imagery were used to map landcover and vegetation index, respectively. Maps of topography, soil type, lineaments and land cover were constructed from the spatial datasets. Ten factors which influence landslide occurrence, i.e., slope, aspect, curvature, distance from drainage, lithology, distance from lineaments, soil type, landcover, rainfall precipitation, and normalized difference vegetation index (ndvi), were extracted from the spatial database and the logistic regression coefficient of each factor was computed. Then the landslide hazard was analysed using the multivariate logistic regression coefficients derived not only from the data for the respective area but also using the logistic regression coefficients calculated from each of the other two areas (nine hazard maps in all) as a cross-validation of the model. For verification of the model, the results of the analyses were then compared with the field-verified landslide locations. Among the three cases of the application of logistic regression coefficient in the same study area, the case of Selangor based on the Selangor logistic regression coefficients showed the highest accuracy (94%), where as Penang based on the Penang coefficients showed the lowest accuracy (86%). Similarly, among the six cases from the cross application of logistic regression coefficient in other two areas, the case of Selangor based on logistic coefficient of Cameron showed highest (90%) prediction accuracy where as the case of Penang based on the Selangor logistic regression coefficients showed the lowest accuracy (79%). Qualitatively, the cross

  16. Cross-validation of component models: a critical look at current methods.

    PubMed

    Bro, R; Kjeldahl, K; Smilde, A K; Kiers, H A L

    2008-03-01

    In regression, cross-validation is an effective and popular approach that is used to decide, for example, the number of underlying features, and to estimate the average prediction error. The basic principle of cross-validation is to leave out part of the data, build a model, and then predict the left-out samples. While such an approach can also be envisioned for component models such as principal component analysis (PCA), most current implementations do not comply with the essential requirement that the predictions should be independent of the entity being predicted. Further, these methods have not been properly reviewed in the literature. In this paper, we review the most commonly used generic PCA cross-validation schemes and assess how well they work in various scenarios. PMID:18214448

  17. Analysis of Human Innate Immune Responses to PRINT Fabricated Nanoparticles with Cross Validation Using a Humanized Mouse Model

    PubMed Central

    Robbins, GR; Roberts, RA; Guo, H; Reuter, K; Shen, T; Sempowski, GD; McKinnon, Karen P.; Su, L; DeSimone, JM; Ting, JP

    2015-01-01

    Ideal nanoparticle (NP)-based drug and vaccine delivery vectors should be free of inherent cytotoxic or immunostimulatory properties. Therefore, determining baseline immune responses to nanomaterials is of utmost importance when designing human therapeutics. We characterized the response of human immune cells to hydrogel NPs fabricated using Particle Replication in Non-wetting Templates (PRINT) technology. We found preferential NP uptake by primary CD14+ monocytes, which was significantly reduced upon PEGylation of the NP surface. Multiplex cytokine analysis of NP treated primary human peripheral blood mononuclear cells (hu-PBMC) suggests that PRINT based hydrogel NPs do not evoke significant inflammatory responses nor do they induce cytotoxicity or complement activation. We furthered these studies using an in vivo humanized mouse model and similarly found preferential NP uptake by human CD14+ monocytes without systemic inflammatory cytokine responses. These studies suggest that PRINT hydrogel particles form a desirable platform for vaccine and drug delivery as they neither induce inflammation nor toxicity. PMID:25596079

  18. The Performance of Cross-Validation Indices Used to Select among Competing Covariance Structure Models under Multivariate Nonnormality Conditions

    ERIC Educational Resources Information Center

    Whittaker, Tiffany A.; Stapleton, Laura M.

    2006-01-01

    Cudeck and Browne (1983) proposed using cross-validation as a model selection technique in structural equation modeling. The purpose of this study is to examine the performance of eight cross-validation indices under conditions not yet examined in the relevant literature, such as nonnormality and cross-validation design. The performance of each…

  19. Cross-Validation, Shrinkage, and Multiple Regression.

    ERIC Educational Resources Information Center

    Hynes, Kevin

    One aspect of multiple regression--the shrinkage of the multiple correlation coefficient on cross-validation is reviewed. The paper consists of four sections. In section one, the distinction between a fixed and a random multiple regression model is made explicit. In section two, the cross-validation paradigm and an explanation for the occurrence…

  20. Attrition from an Adolescent Addiction Treatment Program: A Cross Validation.

    ERIC Educational Resources Information Center

    Mathisen, Kenneth S.; Meyers, Kathleen

    Treatment attrition is a major problem for programs treating adolescent substance abusers. To isolate and cross validate factors which are predictive of addiction treatment attrition among adolescent substance abusers, screening interview and diagnostic variables from 119 adolescent in-patients were submitted to a discriminant equation analysis.…

  1. Double Cross-Validation in Multiple Regression: A Method of Estimating the Stability of Results.

    ERIC Educational Resources Information Center

    Rowell, R. Kevin

    In multiple regression analysis, where resulting predictive equation effectiveness is subject to shrinkage, it is especially important to evaluate result replicability. Double cross-validation is an empirical method by which an estimate of invariance or stability can be obtained from research data. A procedure for double cross-validation is…

  2. Multiple dimensions of health locus of control in a representative population sample: ordinal factor analysis and cross-validation of an existing three and a new four factor model

    PubMed Central

    2011-01-01

    Background Based on the general approach of locus of control, health locus of control (HLOC) concerns control-beliefs due to illness, sickness and health. HLOC research results provide an improved understanding of health related behaviour and patients' compliance in medical care. HLOC research distinguishes between beliefs due to Internality, Externality powerful Others (POs) and Externality Chance. However, evidences for differentiating the POs dimension were found. Previous factor analyses used selected and predominantly clinical samples, while non-clinical studies are rare. The present study is the first analysis of the HLOC structure based on a large representative general population sample providing important information for non-clinical research and public health care. Methods The standardised German questionnaire which assesses HLOC was used in a representative adult general population sample for a region in Northern Germany (N = 4,075). Data analyses used ordinal factor analyses in LISREL and Mplus. Alternative theory-driven models with one to four latent variables were compared using confirmatory factor analysis. Fit indices, chi-square difference tests, residuals and factor loadings were considered for model comparison. Exploratory factor analysis was used for further model development. Results were cross-validated splitting the total sample randomly and using the cross-validation index. Results A model with four latent variables (Internality, Formal Help, Informal Help and Chance) best represented the HLOC construct (three-dimensional model: normed chi-square = 9.55; RMSEA = 0.066; CFI = 0.931; SRMR = 0.075; four-dimensional model: normed chi-square = 8.65; RMSEA = 0.062; CFI = 0.940; SRMR = 0.071; chi-square difference test: p < 0.001). After excluding one item, the superiority of the four- over the three-dimensional HLOC construct became very obvious (three-dimensional model: normed chi-square = 7.74; RMSEA = 0.059; CFI = 0.950; SRMR = 0.079; four

  3. The Proximal Trajectory Algorithm in SVM Cross Validation.

    PubMed

    Astorino, Annabella; Fuduli, Antonio

    2016-05-01

    We propose a bilevel cross-validation scheme for support vector machine (SVM) model selection based on the construction of the entire regularization path. Since such path is a particular case of the more general proximal trajectory concept from nonsmooth optimization, we propose for its construction an algorithm based on solving a finite number of structured linear programs. Our methodology, differently from other approaches, works directly on the primal form of SVM. Numerical results are presented on binary data sets drawn from literature. PMID:27101080

  4. Direct spectral analysis of tea samples using 266 nm UV pulsed laser-induced breakdown spectroscopy and cross validation of LIBS results with ICP-MS.

    PubMed

    Gondal, M A; Habibullah, Y B; Baig, Umair; Oloore, L E

    2016-05-15

    Tea is one of the most common and popular beverages spanning vast array of cultures all over the world. The main nutritional benefits of drinking tea are its anti-oxidant properties, presumed protection against certain cancers, inhibition of inflammation and possible protective effects against diabetes. Laser induced breakdown spectrometer (LIBS) was assembled as a powerful tool for qualitative and quantitative analysis of various brands of tea samples using 266 nm pulsed UV laser. LIBS spectra for six brands of tea samples in the wavelength range of 200-900 nm was recorded and all elements present in our tea samples were identified. The major toxic elements detected in several brands of tea samples were bromine, chromium and minerals like iron, calcium, potassium and silicon. The spectral assignment was conducted prior to the determination of concentration of each element. For quantitative analysis, calibration curves were drawn for each element using standard samples prepared in known concentration in the tea matrix. The plasma parameters (electron temperature and electron density) were also determined prior to the tea samples spectroscopic analysis. The concentration of iron, chromium, potassium, bromine, copper, silicon and calcium detected in all tea samples was between 378-656, 96-124, 1421-6785, 99-1476, 17-36, 2-11 and 92-130 mg L(-1) respectively. The limits of detection estimated for Fe, Cr, K, Br, Cu, Si, Ca in tea samples were 22, 12, 14, 11, 6, 1 and 12 mg L(-1) respectively. To further confirm the accuracy of our LIBS results, we determined the concentration of each element present in tea samples by using standard analytical technique like ICP-MS. The concentrations detected with our LIBS system are in excellent agreement with ICP-MS results. The system assembled for spectral analysis in this work could be highly applicable for testing the quality and purity of food and also pharmaceuticals products. PMID:26992530

  5. Cross-validation and evaluation of the performance of methods for the elemental analysis of forensic glass by μ-XRF, ICP-MS, and LA-ICP-MS.

    PubMed

    Trejos, Tatiana; Koons, Robert; Becker, Stefan; Berman, Ted; Buscaglia, JoAnn; Duecking, Marc; Eckert-Lumsdon, Tiffany; Ernst, Troy; Hanlon, Christopher; Heydon, Alex; Mooney, Kim; Nelson, Randall; Olsson, Kristine; Palenik, Christopher; Pollock, Edward Chip; Rudell, David; Ryland, Scott; Tarifa, Anamary; Valadez, Melissa; Weis, Peter; Almirall, Jose

    2013-06-01

    Elemental analysis of glass was conducted by 16 forensic science laboratories, providing a direct comparison between three analytical methods [micro-x-ray fluorescence spectroscopy (μ-XRF), solution analysis using inductively coupled plasma mass spectrometry (ICP-MS), and laser ablation inductively coupled plasma mass spectrometry]. Interlaboratory studies using glass standard reference materials and other glass samples were designed to (a) evaluate the analytical performance between different laboratories using the same method, (b) evaluate the analytical performance of the different methods, (c) evaluate the capabilities of the methods to correctly associate glass that originated from the same source and to correctly discriminate glass samples that do not share the same source, and (d) standardize the methods of analysis and interpretation of results. Reference materials NIST 612, NIST 1831, FGS 1, and FGS 2 were employed to cross-validate these sensitive techniques and to optimize and standardize the analytical protocols. The resulting figures of merit for the ICP-MS methods include repeatability better than 5% RSD, reproducibility between laboratories better than 10% RSD, bias better than 10%, and limits of detection between 0.03 and 9 μg g(-1) for the majority of the elements monitored. The figures of merit for the μ-XRF methods include repeatability better than 11% RSD, reproducibility between laboratories after normalization of the data better than 16% RSD, and limits of detection between 5.8 and 7,400 μg g(-1). The results from this study also compare the analytical performance of different forensic science laboratories conducting elemental analysis of glass evidence fragments using the three analytical methods. PMID:23673570

  6. Reliable Digit Span: A Systematic Review and Cross-Validation Study

    ERIC Educational Resources Information Center

    Schroeder, Ryan W.; Twumasi-Ankrah, Philip; Baade, Lyle E.; Marshall, Paul S.

    2012-01-01

    Reliable Digit Span (RDS) is a heavily researched symptom validity test with a recent literature review yielding more than 20 studies ranging in dates from 1994 to 2011. Unfortunately, limitations within some of the research minimize clinical generalizability. This systematic review and cross-validation study was conducted to address these…

  7. Cross validation in LASSO and its acceleration

    NASA Astrophysics Data System (ADS)

    Obuchi, Tomoyuki; Kabashima, Yoshiyuki

    2016-05-01

    We investigate leave-one-out cross validation (CV) as a determinator of the weight of the penalty term in the least absolute shrinkage and selection operator (LASSO). First, on the basis of the message passing algorithm and a perturbative discussion assuming that the number of observations is sufficiently large, we provide simple formulas for approximately assessing two types of CV errors, which enable us to significantly reduce the necessary cost of computation. These formulas also provide a simple connection of the CV errors to the residual sums of squares between the reconstructed and the given measurements. Second, on the basis of this finding, we analytically evaluate the CV errors when the design matrix is given as a simple random matrix in the large size limit by using the replica method. Finally, these results are compared with those of numerical simulations on finite-size systems and are confirmed to be correct. We also apply the simple formulas of the first type of CV error to an actual dataset of the supernovae.

  8. Formula Estimation of Cross-Validated Multiple Correlation.

    ERIC Educational Resources Information Center

    Schmitt, Neal

    A review of cross-validation shrinkage formulas is presented which focuses on the theoretical and practical problems in the use of various formulas. Practical guidelines for use of both formulas and empirical cross-validation are provided. A comparison of results using these formulas in a range of situations is then presented. The result of these…

  9. International cross-validation of a BOD5 surrogate.

    PubMed

    Muller, Mathieu; Bouguelia, Sihem; Goy, Romy-Alice; Yoris, Alison; Berlin, Jeanne; Meche, Perrine; Rocher, Vincent; Mertens, Sharon; Dudal, Yves

    2014-12-01

    BOD5 dates back to 1912 when the Royal Commission decided to use the mean residence time of water in the rivers of England, 5 days, as a standard to measure the biochemical oxygen demand. Initially designed to protect the quality of river waters from extensive sewage discharge, the use of BOD5 has been quickly extended to waste water treatment plants (WWTPs) to monitor their efficiency on a daily basis. The measurement has been automatized but remains a tedious, time- and resource-consuming analysis. We have cross-validated a surrogate BOD5 method on two sites in France and in the USA with a total of 109 samples. This method uses a fluorescent redox indicator on a 96-well microplate to measure microbial catabolic activity for a large number of samples simultaneously. Three statistical tests were used to compare surrogate and reference methods and showed robust equivalence. PMID:24946712

  10. A K-fold Averaging Cross-validation Procedure

    PubMed Central

    Jung, Yoonsuh; Hu, Jianhua

    2015-01-01

    Cross-validation type of methods have been widely used to facilitate model estimation and variable selection. In this work, we suggest a new K-fold cross validation procedure to select a candidate ‘optimal’ model from each hold-out fold and average the K candidate ‘optimal’ models to obtain the ultimate model. Due to the averaging effect, the variance of the proposed estimates can be significantly reduced. This new procedure results in more stable and efficient parameter estimation than the classical K-fold cross validation procedure. In addition, we show the asymptotic equivalence between the proposed and classical cross validation procedures in the linear regression setting. We also demonstrate the broad applicability of the proposed procedure via two examples of parameter sparsity regularization and quantile smoothing splines modeling. We illustrate the promise of the proposed method through simulations and a real data example.

  11. A cross-validation package driving Netica with python

    USGS Publications Warehouse

    Fienen, Michael N.; Plant, Nathaniel G.

    2014-01-01

    Bayesian networks (BNs) are powerful tools for probabilistically simulating natural systems and emulating process models. Cross validation is a technique to avoid overfitting resulting from overly complex BNs. Overfitting reduces predictive skill. Cross-validation for BNs is known but rarely implemented due partly to a lack of software tools designed to work with available BN packages. CVNetica is open-source, written in Python, and extends the Netica software package to perform cross-validation and read, rebuild, and learn BNs from data. Insights gained from cross-validation and implications on prediction versus description are illustrated with: a data-driven oceanographic application; and a model-emulation application. These examples show that overfitting occurs when BNs become more complex than allowed by supporting data and overfitting incurs computational costs as well as causing a reduction in prediction skill. CVNetica evaluates overfitting using several complexity metrics (we used level of discretization) and its impact on performance metrics (we used skill).

  12. Cross-Validation of the Quick Word Test as an Estimator of Adult Mental Ability

    ERIC Educational Resources Information Center

    Grotelueschen, Arden; McQuarrie, Duncan

    1970-01-01

    This report provides additional evidence that the Quick Word Test (Level 2, Form AM) is valid for estimating adult mental ability as defined by the Wechsler Adult Intelligence Scale. The validation sample is also described to facilitate use of the conversion table developed in the cross-validation analysis. (Author/LY)

  13. Cross-validating factors associated with discharges against medical advice.

    PubMed

    Dalrymple, A J; Fata, M

    1993-05-01

    Between six percent and 35% of psychiatric patients discharge themselves from hospital against medical advice (AMA). The discharges may prevent patients from deriving the full benefit of hospitalization and may result in rapid rehospitalization. We examined sociodemographic and clinical characteristics of 195 irregular discharges from a 237 bed psychiatric hospital over a five year period and found that AMA discharges increased over the study period to a peak of 25% in 1986. There was a strong negative correlation between AMA discharge rates and the willingness of physicians to commit patients involuntarily. Multiple discriminant analysis revealed a set of nine variables that accurately classified 78% of cases into regular or irregular discharge categories. Further analysis revealed that there are two distinct subgroups of patients who discharge themselves AMA: those who repeatedly left the hospital AMA in a regular "revolving back door" pattern and those who left AMA only once. The repeat group exceeded the one-time group in terms of prior admissions, appearances before review boards, and percentage of Natives. The repeat group also spent twice as long in hospital, and 27% were readmitted within one-week of the index AMA discharge. Less than three percent of the one-time AMA group was readmitted within a week. These results were cross-validated on a new sample of irregular discharges and matched controls. PMID:8518982

  14. Comprehensive Assessment of Emotional Disturbance: A Cross-Validation Approach

    ERIC Educational Resources Information Center

    Fisher, Emily S.; Doyon, Katie E.; Saldana, Enrique; Allen, Megan Redding

    2007-01-01

    Assessing a student for emotional disturbance is a serious and complex task given the stigma of the label and the ambiguities of the federal definition. One way that school psychologists can be more confident in their assessment results is to cross validate data from different sources using the RIOT approach (Review, Interview, Observe, Test).…

  15. The Cross Validation of the Attitudes toward Mainstreaming Scale (ATMS).

    ERIC Educational Resources Information Center

    Berryman, Joan D.; Neal, W. R. Jr.

    1980-01-01

    Reliability and factorial validity of the Attitudes Toward Mainstreaming Scale was supported in a cross-validation study with teachers. Three factors emerged: learning capability, general mainstreaming, and traditional limiting disabilities. Factor intercorrelations varied from .42 to .55; correlations between total scores and individual factors…

  16. Cross-validation of interferometric synthetic aperture microscopy and optical coherence tomography.

    PubMed

    Ralston, Tyler S; Adie, Steven G; Marks, Daniel L; Boppart, Stephen A; Carney, P Scott

    2010-05-15

    Computationally reconstructed interferometric synthetic aperture microscopy is coregistered with optical coherence tomography (OCT) focal plane data to provide quantitative cross validation with OCT. This is accomplished through a qualitative comparison of images and a quantitative analysis of the width of the point-spread function in simulation and experiment. The width of the ISAM point-spread function is seen to be independent of depth, in contrast to OCT. PMID:20479849

  17. A cross-validation scheme for machine learning algorithms in shotgun proteomics

    PubMed Central

    2012-01-01

    Peptides are routinely identified from mass spectrometry-based proteomics experiments by matching observed spectra to peptides derived from protein databases. The error rates of these identifications can be estimated by target-decoy analysis, which involves matching spectra to shuffled or reversed peptides. Besides estimating error rates, decoy searches can be used by semi-supervised machine learning algorithms to increase the number of confidently identified peptides. As for all machine learning algorithms, however, the results must be validated to avoid issues such as overfitting or biased learning, which would produce unreliable peptide identifications. Here, we discuss how the target-decoy method is employed in machine learning for shotgun proteomics, focusing on how the results can be validated by cross-validation, a frequently used validation scheme in machine learning. We also use simulated data to demonstrate the proposed cross-validation scheme's ability to detect overfitting. PMID:23176259

  18. Benchmarking protein classification algorithms via supervised cross-validation.

    PubMed

    Kertész-Farkas, Attila; Dhir, Somdutta; Sonego, Paolo; Pacurar, Mircea; Netoteia, Sergiu; Nijveen, Harm; Kuzniar, Arnold; Leunissen, Jack A M; Kocsor, András; Pongor, Sándor

    2008-04-24

    Development and testing of protein classification algorithms are hampered by the fact that the protein universe is characterized by groups vastly different in the number of members, in average protein size, similarity within group, etc. Datasets based on traditional cross-validation (k-fold, leave-one-out, etc.) may not give reliable estimates on how an algorithm will generalize to novel, distantly related subtypes of the known protein classes. Supervised cross-validation, i.e., selection of test and train sets according to the known subtypes within a database has been successfully used earlier in conjunction with the SCOP database. Our goal was to extend this principle to other databases and to design standardized benchmark datasets for protein classification. Hierarchical classification trees of protein categories provide a simple and general framework for designing supervised cross-validation strategies for protein classification. Benchmark datasets can be designed at various levels of the concept hierarchy using a simple graph-theoretic distance. A combination of supervised and random sampling was selected to construct reduced size model datasets, suitable for algorithm comparison. Over 3000 new classification tasks were added to our recently established protein classification benchmark collection that currently includes protein sequence (including protein domains and entire proteins), protein structure and reading frame DNA sequence data. We carried out an extensive evaluation based on various machine-learning algorithms such as nearest neighbor, support vector machines, artificial neural networks, random forests and logistic regression, used in conjunction with comparison algorithms, BLAST, Smith-Waterman, Needleman-Wunsch, as well as 3D comparison methods DALI and PRIDE. The resulting datasets provide lower, and in our opinion more realistic estimates of the classifier performance than do random cross-validation schemes. A combination of supervised and

  19. Cost-Benefit Considerations in Choosing among Cross-Validation Methods.

    ERIC Educational Resources Information Center

    Murphy, Kevin R.

    There are two general methods of cross-validation: empirical estimation, and formula estimation. In choosing a specific cross-validation procedure, one should consider both costs (e.g., inefficient use of available data in estimating regression parameters) and benefits (e.g., accuracy in estimating population cross-validity). Empirical…

  20. Cross-Validation of Aerobic Capacity Prediction Models in Adolescents.

    PubMed

    Burns, Ryan Donald; Hannon, James C; Brusseau, Timothy A; Eisenman, Patricia A; Saint-Maurice, Pedro F; Welk, Greg J; Mahar, Matthew T

    2015-08-01

    Cardiorespiratory endurance is a component of health-related fitness. FITNESSGRAM recommends the Progressive Aerobic Cardiovascular Endurance Run (PACER) or One mile Run/Walk (1MRW) to assess cardiorespiratory endurance by estimating VO2 Peak. No research has cross-validated prediction models from both PACER and 1MRW, including the New PACER Model and PACER-Mile Equivalent (PACER-MEQ) using current standards. The purpose of this study was to cross-validate prediction models from PACER and 1MRW against measured VO2 Peak in adolescents. Cardiorespiratory endurance data were collected on 90 adolescents aged 13-16 years (Mean = 14.7 ± 1.3 years; 32 girls, 52 boys) who completed the PACER and 1MRW in addition to a laboratory maximal treadmill test to measure VO2 Peak. Multiple correlations among various models with measured VO2 Peak were considered moderately strong (R = .74-0.78), and prediction error (RMSE) ranged from 5.95 ml·kg⁻¹,min⁻¹ to 8.27 ml·kg⁻¹.min⁻¹. Criterion-referenced agreement into FITNESSGRAM's Healthy Fitness Zones was considered fair-to-good among models (Kappa = 0.31-0.62; Agreement = 75.5-89.9%; F = 0.08-0.65). In conclusion, prediction models demonstrated moderately strong linear relationships with measured VO2 Peak, fair prediction error, and fair-to-good criterion referenced agreement with measured VO2 Peak into FITNESSGRAM's Healthy Fitness Zones. PMID:26186536

  1. Predicting IQ change from brain structure: A cross-validation study

    PubMed Central

    Price, C.J.; Ramsden, S.; Hope, T.M.H.; Friston, K.J.; Seghier, M.L.

    2013-01-01

    Procedures that can predict cognitive abilities from brain imaging data are potentially relevant to educational assessments and studies of functional anatomy in the developing brain. Our aim in this work was to quantify the degree to which IQ change in the teenage years could be predicted from structural brain changes. Two well-known k-fold cross-validation analyses were applied to data acquired from 33 healthy teenagers – each tested at Time 1 and Time 2 with a 3.5 year interval. One approach, a Leave-One-Out procedure, predicted IQ change for each subject on the basis of structural change in a brain region that was identified from all other subjects (i.e., independent data). This approach predicted 53% of verbal IQ change and 14% of performance IQ change. The other approach used half the sample, to identify regions for predicting IQ change in the other half (i.e., a Split half approach); however – unlike the Leave-One-Out procedure – regions identified using half the sample were not significant. We discuss how these out-of-sample estimates compare to in-sample estimates; and draw some recommendations for k-fold cross-validation procedures when dealing with small datasets that are typical in the neuroimaging literature. PMID:23567505

  2. Testing alternative ground water models using cross-validation and other methods

    USGS Publications Warehouse

    Foglia, L.; Mehl, S.W.; Hill, M.C.; Perona, P.; Burlando, P.

    2007-01-01

    Many methods can be used to test alternative ground water models. Of concern in this work are methods able to (1) rank alternative models (also called model discrimination) and (2) identify observations important to parameter estimates and predictions (equivalent to the purpose served by some types of sensitivity analysis). Some of the measures investigated are computationally efficient; others are computationally demanding. The latter are generally needed to account for model nonlinearity. The efficient model discrimination methods investigated include the information criteria: the corrected Akaike information criterion, Bayesian information criterion, and generalized cross-validation. The efficient sensitivity analysis measures used are dimensionless scaled sensitivity (DSS), composite scaled sensitivity, and parameter correlation coefficient (PCC); the other statistics are DFBETAS, Cook's D, and observation-prediction statistic. Acronyms are explained in the introduction. Cross-validation (CV) is a computationally intensive nonlinear method that is used for both model discrimination and sensitivity analysis. The methods are tested using up to five alternative parsimoniously constructed models of the ground water system of the Maggia Valley in southern Switzerland. The alternative models differ in their representation of hydraulic conductivity. A new method for graphically representing CV and sensitivity analysis results for complex models is presented and used to evaluate the utility of the efficient statistics. The results indicate that for model selection, the information criteria produce similar results at much smaller computational cost than CV. For identifying important observations, the only obviously inferior linear measure is DSS; the poor performance was expected because DSS does not include the effects of parameter correlation and PCC reveals large parameter correlations. ?? 2007 National Ground Water Association.

  3. Investigation of electroforming techniques, literature analysis report

    NASA Technical Reports Server (NTRS)

    Malone, G. A.

    1975-01-01

    A literature analysis is presented of reports, specifications, and documented experiences with the use of electroforming to produce copper and nickel structures for aerospace and other engineering applications. The literature period covered is from 1948 to 1974. Specific effort was made to correlate mechanical property data for the electrodeposited material with known electroforming solution compositions and operating conditions. From this survey, electrolytes are suggested for selection to electroform copper and nickel outer shells on regeneratively cooled thrust chamber liners, and other devices subject to thermal and pressure exposure, based on mechanical properties obtainable, performance under various thermal environments, and ease of process control for product reproducibility. Processes of potential value in obtaining sound bonds between electrodeposited copper and nickel and copper alloy substrates are also discussed.

  4. Cost-Benefit Considerations in Choosing among Cross-Validation Methods.

    ERIC Educational Resources Information Center

    Murphy, Kevin R.

    1984-01-01

    Outlines costs and benefits associated with different cross-validation strategies; in particular the way in which the study design affects the cost and benefits of different types of cross-validation. Suggests that the choice between empirical estimation methods and formula estimates involves a trade-off between accuracy and simplicity. (JAC)

  5. Multisample cross-validation of a model of childhood posttraumatic stress disorder symptomatology.

    PubMed

    Anthony, Jason L; Lonigan, Christopher J; Vernberg, Eric M; Greca, Annette M La; Silverman, Wendy K; Prinstein, Mitchell J

    2005-12-01

    This study is the latest advancement of our research aimed at best characterizing children's posttraumatic stress reactions. In a previous study, we compared existing nosologic and empirical models of PTSD dimensionality and determined the superior model was a hierarchical one with three symptom clusters (Intrusion/Active Avoidance, Numbing/Passive Avoidance, and Arousal; Anthony, Lonigan, & Hecht, 1999). In this study, we cross-validate this model in two populations. Participants were 396 fifth graders who were exposed to either Hurricane Andrew or Hurricane Hugo. Multisample confirmatory factor analysis demonstrated the model's factorial invariance across populations who experienced traumatic events that differed in severity. These results show the model's robustness to characterize children's posttraumatic stress reactions. Implications for diagnosis, classification criteria, and an empirically supported theory of PTSD are discussed. PMID:16382435

  6. Colonialism and Native American Literature: Analysis.

    ERIC Educational Resources Information Center

    Forbes, Jack

    1987-01-01

    The literature of the Native Peoples of North America is gaining interest with an increasing number of persons; however, recent articles fail to view this literature holistically and within a realistic cultural, historical, and social context. A history of Native American literature and the impact of colonialism is included. (JMM)

  7. Backward Variable Elimination Canonical Correlation and Canonical Cross-Validation.

    ERIC Educational Resources Information Center

    Eason, Sandra

    This paper suggests that multivariate analysis techniques are very important in educational research, and that one multivariate technique--canonical correlation analysis--may be particularly useful. The logic of canonical analysis is explained. It is suggested that a backward variable elimination strategy can make the method even more powerful, by…

  8. Some psychometric properties of the Chinese version of the Modified Dental Anxiety Scale with cross validation

    PubMed Central

    Yuan, Siyang; Freeman, Ruth; Lahti, Satu; Lloyd-Williams, Ffion; Humphris, Gerry

    2008-01-01

    Objective To assess the factorial structure and construct validity for the Chinese version of the Modified Dental Anxiety Scale (MDAS). Materials and methods A cross-sectional survey was conducted in March 2006 from adults in the Beijing area. The questionnaire consisted of sections to assess for participants' demographic profile and dental attendance patterns, the Chinese MDAS and the anxiety items from the Hospital Anxiety and Depression Scale (HADS). The analysis was conducted in two stages using confirmatory factor analysis and structural equation modelling. Cross validation was tested with a North West of England comparison sample. Results 783 questionnaires were successfully completed from Beijing, 468 from England. The Chinese MDAS consisted of two factors: anticipatory dental anxiety (ADA) and treatment dental anxiety (TDA). Internal consistency coefficients (tau non-equivalent) were 0.74 and 0.86 respectively. Measurement properties were virtually identical for male and female respondents. Relationships of the Chinese MDAS with gender, age and dental attendance supported predictions. Significant structural parameters between the two sub-scales (negative affectivity and autonomic anxiety) of the HADS anxiety items and the two newly identified factors of the MDAS were confirmed and duplicated in the comparison sample. Conclusion The Chinese version of the MDAS has good psychometric properties and has the ability to assess, briefly, overall dental anxiety and two correlated but distinct aspects. PMID:18364045

  9. Development and cross-validation of prediction equations for estimating resting energy expenditure in severely obese Caucasian children and adolescents.

    PubMed

    Lazzer, Stefano; Agosti, Fiorenza; De Col, Alessandra; Sartorio, Alessandro

    2006-11-01

    The objectives of the present study were to develop and cross-validate new equations for predicting resting energy expenditure (REE) in severely obese children and adolescents, and to determine the accuracy of new equations using the Bland-Altman method. The subjects of the study were 574 obese Caucasian children and adolescents (mean BMI z-score 3.3). REE was determined by indirect calorimetry and body composition by bioelectrical impedance analysis. Equations were derived by stepwise multiple regression analysis using a calibration cohort of 287 subjects and the equations were cross-validated in the remaining 287 subjects. Two new specific equations based on anthropometric parameters were generated as follows: (1) REE=(Sex x 892.68)-(Age x 115.93)+(Weight x 54.96)+(Stature x 1816.23)+1484.50 (R(2) 0.66; se 1028.97 kJ); (2) REE=(Sex x 909.12)-(Age x 107.48)+(fat-free mass x 68.39)+(fat mass x 55.19)+3631.23 (R(2) 0.66; se 1034.28 kJ). In the cross-validation group, mean predicted REE values were not significantly different from the mean measured REE for all children and adolescents, as well as for boys and for girls (difference <2 %) and the limits of agreement (+/-2 sd) were +2.06 and -1.77 MJ/d (NS). The new prediction equations allow an accurate estimation of REE in groups of severely obese children and adolescents. These equations might be useful for health care professionals and researchers when estimating REE in severely obese children and adolescents. PMID:17092390

  10. Biased binomial assessment of cross-validated estimation of classification accuracies illustrated in diagnosis predictions.

    PubMed

    Noirhomme, Quentin; Lesenfants, Damien; Gomez, Francisco; Soddu, Andrea; Schrouff, Jessica; Garraux, Gaëtan; Luxen, André; Phillips, Christophe; Laureys, Steven

    2014-01-01

    Multivariate classification is used in neuroimaging studies to infer brain activation or in medical applications to infer diagnosis. Their results are often assessed through either a binomial or a permutation test. Here, we simulated classification results of generated random data to assess the influence of the cross-validation scheme on the significance of results. Distributions built from classification of random data with cross-validation did not follow the binomial distribution. The binomial test is therefore not adapted. On the contrary, the permutation test was unaffected by the cross-validation scheme. The influence of the cross-validation was further illustrated on real-data from a brain-computer interface experiment in patients with disorders of consciousness and from an fMRI study on patients with Parkinson disease. Three out of 16 patients with disorders of consciousness had significant accuracy on binomial testing, but only one showed significant accuracy using permutation testing. In the fMRI experiment, the mental imagery of gait could discriminate significantly between idiopathic Parkinson's disease patients and healthy subjects according to the permutation test but not according to the binomial test. Hence, binomial testing could lead to biased estimation of significance and false positive or negative results. In our view, permutation testing is thus recommended for clinical application of classification with cross-validation. PMID:24936420

  11. Biased binomial assessment of cross-validated estimation of classification accuracies illustrated in diagnosis predictions

    PubMed Central

    Noirhomme, Quentin; Lesenfants, Damien; Gomez, Francisco; Soddu, Andrea; Schrouff, Jessica; Garraux, Gaëtan; Luxen, André; Phillips, Christophe; Laureys, Steven

    2014-01-01

    Multivariate classification is used in neuroimaging studies to infer brain activation or in medical applications to infer diagnosis. Their results are often assessed through either a binomial or a permutation test. Here, we simulated classification results of generated random data to assess the influence of the cross-validation scheme on the significance of results. Distributions built from classification of random data with cross-validation did not follow the binomial distribution. The binomial test is therefore not adapted. On the contrary, the permutation test was unaffected by the cross-validation scheme. The influence of the cross-validation was further illustrated on real-data from a brain–computer interface experiment in patients with disorders of consciousness and from an fMRI study on patients with Parkinson disease. Three out of 16 patients with disorders of consciousness had significant accuracy on binomial testing, but only one showed significant accuracy using permutation testing. In the fMRI experiment, the mental imagery of gait could discriminate significantly between idiopathic Parkinson's disease patients and healthy subjects according to the permutation test but not according to the binomial test. Hence, binomial testing could lead to biased estimation of significance and false positive or negative results. In our view, permutation testing is thus recommended for clinical application of classification with cross-validation. PMID:24936420

  12. Literature Reviews: Analysis, Planning, and Query Techniques

    ERIC Educational Resources Information Center

    Wilhelm, William J.; Kaunelis, David

    2005-01-01

    Graduate students, tenured and tenure-track professors, and other professionals conduct scholarly research and have their findings published in recognized journals. Undergraduate and graduate students engage in rudimentary research to gather data relevant to case assignments in order to develop reasoned arguments. A focused literature review helps…

  13. Literature.

    ERIC Educational Resources Information Center

    Verner, Zenobia, Ed.

    1977-01-01

    This issue provides a selection of articles about literature and the teaching of literature. Titles include "Sin, Salvation, and Grace in 'The Scarlet Letter,'""'The Road Not Taken': A Study in Ambiguity,""In Search of Shakespeare: The Essential Years,""Right Deeds for Wrong Reasons: Teaching the Bible as Literature,""A Southern Author's Fight for…

  14. Evaluation and cross-validation of Environmental Models

    NASA Astrophysics Data System (ADS)

    Lemaire, Joseph

    , preliminary analyses should be carried out under the control and authority of an established international professional Organization or Association, before any final political decision is made by ISO to select a specific Environmental Models, like for example IGRF and DGRF. Of course, Commissions responsible for checking the consistency of definitions, methods and algorithms for data processing might consider to delegate specific tasks (e.g. bench-marking the technical tools, the calibration procedures, the methods of data analysis, and the software algorithms employed in building the different types of models, as well as their usage) to private, intergovernmental or international organization/agencies (e.g.: NASA, ESA, AGU, EGU, COSPAR, . . . ); eventually, the latter should report conclusions to the Commissions members appointed by IAGA or any established authority like IUGG.

  15. Cross-Validation of Magnetic Resonance Elastography and Ultrasound-Based Transient Elastography: A Preliminary Phantom Study

    PubMed Central

    Chen, Jun; Glaser, Kevin J; Miette, Véronique; Sandrin, Laurent; Ehman, Richard L

    2010-01-01

    Purpose To cross-validate two recent noninvasive elastographic techniques, Ultrasound-based Transient Elastography (UTE) and Magnetic Resonance Elastography (MRE). As potential alternatives to liver biopsy, UTE and MRE are undergoing clinical investigations for liver fibrosis diagnosis and liver disease management around the world. These two techniques use tissue stiffness as a marker for disease state and it is important to do a cross-validation study of both elastographic techniques to determine the consistency with which the two techniques can measure the mechanical properties of materials. Materials and Methods In this paper, 19 well-characterized phantoms with a range of stiffness values were measured by two clinical devices (a Fibroscan and a MRE system based respectively on the UTE and MRE techniques) successively with the operators double-blinded. Results Statistical analysis showed that the correlation coefficient was r2=0.93 between MRE and UTE, and there was no evidence of a systematic difference between them within the range of stiffnesses examined. Conclusion These two noninvasive methods, MRE and UTE, provide clinicians with important new options for improving patient care regarding liver diseases in terms of the diagnosis, prognosis, and monitoring of fibrosis progression, as well for evaluating the efficacy of treatment. PMID:19856447

  16. Cross-validation and calibration of Jackson-Pollock equations with DXA: the TIGER study

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Jackson-Pollock (J&P) body composition equations were developed primarily from data on white men and women using hydrostatically determined body density (BD) as the criterion measure. This study cross-validated the J&P equations with ethnically diverse subjects and percent fat (%fat) determined ...

  17. Cross-Validation of the Risk Matrix 2000 Sexual and Violent Scales

    ERIC Educational Resources Information Center

    Craig, Leam A.; Beech, Anthony; Browne, Kevin D.

    2006-01-01

    The predictive accuracy of the newly developed actuarial risk measures Risk Matrix 2000 Sexual/Violence (RMS, RMV) were cross validated and compared with two risk assessment measures (SVR-20 and Static-99) in a sample of sexual (n = 85) and nonsex violent (n = 46) offenders. The sexual offense reconviction rate for the sex offender group was 18%…

  18. Cross-Validation of FITNESSGRAM® Health-Related Fitness Standards in Hungarian Youth

    ERIC Educational Resources Information Center

    Laurson, Kelly R.; Saint-Maurice, Pedro F.; Karsai, István; Csányi, Tamás

    2015-01-01

    Purpose: The purpose of this study was to cross-validate FITNESSGRAM® aerobic and body composition standards in a representative sample of Hungarian youth. Method: A nationally representative sample (N = 405) of Hungarian adolescents from the Hungarian National Youth Fitness Study (ages 12-18.9 years) participated in an aerobic capacity assessment…

  19. Cross-Validation and Extension of the MMPI-A IMM Scale.

    ERIC Educational Resources Information Center

    Zinn, Sandra; McCumber, Stacey; Dahlstrom, W. Grant

    1999-01-01

    Cross-validated the IMM scale of the Minnesota Multiphasic Personality Inventory-Adolescents (MMPI-A), a measure of ego level, with 151 college students. Means and standard deviations were obtained on IMM scale from the MMPI-A and another MMPI version for males and females. (SLD)

  20. Important Literature in Endocrinology: Citation Analysis and Historial Methodology.

    ERIC Educational Resources Information Center

    Hurt, C. D.

    1982-01-01

    Results of a study comparing two approaches to the identification of important literature in endocrinology reveals that association between ranking of cited items using the two methods is not statistically significant and use of citation or historical analysis alone will not result in same set of literature. Forty-two sources are appended. (EJS)

  1. Gender Differences in Leadership Style: A Literature Analysis

    ERIC Educational Resources Information Center

    Clisbee, Mary

    2005-01-01

    This analysis of literature explores gender differences in leadership style. As greater numbers of women enter the ranks of leadership and more research is conducted, contradictory findings emerged. Using the qualitative software program Nvivo version 1.2, 36 pieces of qualitative, quantitative, and popular culture literature were summarized,…

  2. Automation literature: A brief review and analysis

    NASA Technical Reports Server (NTRS)

    Smith, D.; Dieterly, D. L.

    1980-01-01

    Current thought and research positions which may allow for an improved capability to understand the impact of introducing automation to an existing system are established. The orientation was toward the type of studies which may provide some general insight into automation; specifically, the impact of automation in human performance and the resulting system performance. While an extensive number of articles were reviewed, only those that addressed the issue of automation and human performance were selected to be discussed. The literature is organized along two dimensions: time, Pre-1970, Post-1970; and type of approach, Engineering or Behavioral Science. The conclusions reached are not definitive, but do provide the initial stepping stones in an attempt to begin to bridge the concept of automation in a systematic progression.

  3. Community resilience assessment and literature analysis.

    PubMed

    Weiner, John M; Walsh, John J

    2015-01-01

    Earlier and current disaster-related research emphasised the sociological/behavioural perspective. This led to a significant amount of literature devoted to descriptive context of natural, man-made and technological disasters and sequelae. This paper considers a next step involving a more expanded approach in research methodology. The phases include: (1) the development of a comprehensive database of ideas provided by authors of scholarly and scientific papers; (2) the development of computer-supported algorithms to prepare an array of scenarios representing relationships, gaps and inconsistencies in existing knowledge; (3) a process for evaluating the scenarios to determine a feasible and interesting next research strategy or programmatic action that will provide enhanced description of the problems as well as possible insights to their correction by interventions. The intent is to develop interventions as an essential component for better prevention, mitigation, rehabilitation, reconstruction and problem-solving affected by disaster events. To illustrate this approach, community resilience, a relatively new and important idea was studied. The phrase was used to describe relationships and omissions. The ideas associated with this central idea were considered in the building of a new instrument for evaluation of community vulnerability and readiness. This methodology addresses the time constraints realised by practitioners and investigators. The methods should eliminate tedious, clerical functions and focus on the intellectual functions representing optimal use of human energy. PMID:26420398

  4. A Bibliometric Analysis of Certain Information Science Literature

    ERIC Educational Resources Information Center

    Donohue, Joseph C.

    1972-01-01

    Several bibliometric techniques previously applied to separate scientific literatures were used together in the analysis of a single corpus of journal articles relating to information science. Techniques included were: Bradford Analysis, epidemic analysis, identification of research front, and bibliographic coupling. (16 references) (Author)

  5. Cross-Validation of easyCBM Reading Cut Scores in Oregon: 2009-2010. Technical Report #1108

    ERIC Educational Resources Information Center

    Park, Bitnara Jasmine; Irvin, P. Shawn; Anderson, Daniel; Alonzo, Julie; Tindal, Gerald

    2011-01-01

    This technical report presents results from a cross-validation study designed to identify optimal cut scores when using easyCBM[R] reading tests in Oregon. The cross-validation study analyzes data from the 2009-2010 academic year for easyCBM[R] reading measures. A sample of approximately 2,000 students per grade, randomly split into two groups of…

  6. Methodology Review: Estimation of Population Validity and Cross-Validity, and the Use of Equal Weights in Prediction.

    ERIC Educational Resources Information Center

    Raju, Nambury S.; Bilgic, Reyhan; Edwards, Jack E.; Fleer, Paul F.

    1997-01-01

    This review finds that formula-based procedures can be used in place of empirical validation for estimating population validity or in place of empirical cross-validation for estimating population cross-validity. Discusses conditions under which the equal weights procedure is a viable alternative. (SLD)

  7. A Pattern Analysis of Gene Conversion Literature

    PubMed Central

    Lawson, Mark J.; Jiao, Jian; Fan, Weiguo; Zhang, Liqing

    2009-01-01

    Gene conversion is an important biological process that involves the transfer of genetic (sequence) information from one gene to another. This can have a variety of effects on an organism, both short-term and long-term and both positive and detrimental. In an effort to better understand this process, we searched through over 3,000 abstracts that contain research on gene conversions, tagging the important data and performing an analysis on what we extract. Through this we established trends that give a better insight into gene conversion research and genetic research in general. Our results show the importance of the process and the importance of continuing gene conversion research. PMID:20148076

  8. Standardization and cross validation of alloreactive IFNγ ELISPOT assays within the clinical trials in organ transplantation consortium.

    PubMed

    Ashoor, I; Najafian, N; Korin, Y; Reed, E F; Mohanakumar, T; Ikle, D; Heeger, P S; Lin, M

    2013-07-01

    Emerging evidence indicates memory donor-reactive T cells are detrimental to transplant outcome and that quantifying the frequency of IFNγ-producing, donor-reactive PBMCs by ELISPOT has potential utility as an immune monitoring tool. Nonetheless, differences in assay performance among laboratories limit the ability to compare results. In an effort to standardize assays, we prepared a panel of common cellular reagent standards, developed and cross validated a standard operating procedure (SOP) for alloreactive IFNγ ELISPOT assays in several research laboratories supported by the NIH-funded Clinical Trials in Organ Transplantation (CTOT) Consortium. We demonstrate that strict adherence to the SOP and centralized data analysis results in high reproducibility with a coefficient of variance (CV) of ≈ 30%. This standardization of IFNγ ELISPOT assay will facilitate interpretation of data from multicenter transplantation research studies and provide the foundation for developing clinical laboratory testing strategies to guide therapeutic decision-making in transplant patients. PMID:23710568

  9. A universal approximate cross-validation criterion for regular risk functions.

    PubMed

    Commenges, Daniel; Proust-Lima, Cécile; Samieri, Cécilia; Liquet, Benoit

    2015-05-01

    Selection of estimators is an essential task in modeling. A general framework is that the estimators of a distribution are obtained by minimizing a function (the estimating function) and assessed using another function (the assessment function). A classical case is that both functions estimate an information risk (specifically cross-entropy); this corresponds to using maximum likelihood estimators and assessing them by Akaike information criterion (AIC). In more general cases, the assessment risk can be estimated by leave-one-out cross-validation. Since leave-one-out cross-validation is computationally very demanding, we propose in this paper a universal approximate cross-validation criterion under regularity conditions (UACVR). This criterion can be adapted to different types of estimators, including penalized likelihood and maximum a posteriori estimators, and also to different assessment risk functions, including information risk functions and continuous rank probability score (CRPS). UACVR reduces to Takeuchi information criterion (TIC) when cross-entropy is the risk for both estimation and assessment. We provide the asymptotic distributions of UACVR and of a difference of UACVR values for two estimators. We validate UACVR using simulations and provide an illustration on real data both in the psychometric context where estimators of the distributions of ordered categorical data derived from threshold models and models based on continuous approximations are compared. PMID:25849800

  10. Cancer Nursing Education: Literature Review and Documentary Analysis.

    ERIC Educational Resources Information Center

    Langton, Helen; Blunden, Gillian; Hek, Gill

    The knowledge and skills needed by cancer nurses and the content and strategies of England's existing cancer nursing education programs were examined. The study included a comprehensive literature review and an analysis of course documents from selected English National Board-approved post-qualifying cancer nursing and palliative care courses…

  11. Free kick instead of cross-validation in maximum-likelihood refinement of macromolecular crystal structures

    SciTech Connect

    Pražnikar, Jure; Turk, Dušan

    2014-12-01

    The maximum-likelihood free-kick target, which calculates model error estimates from the work set and a randomly displaced model, proved superior in the accuracy and consistency of refinement of crystal structures compared with the maximum-likelihood cross-validation target, which calculates error estimates from the test set and the unperturbed model. The refinement of a molecular model is a computational procedure by which the atomic model is fitted to the diffraction data. The commonly used target in the refinement of macromolecular structures is the maximum-likelihood (ML) function, which relies on the assessment of model errors. The current ML functions rely on cross-validation. They utilize phase-error estimates that are calculated from a small fraction of diffraction data, called the test set, that are not used to fit the model. An approach has been developed that uses the work set to calculate the phase-error estimates in the ML refinement from simulating the model errors via the random displacement of atomic coordinates. It is called ML free-kick refinement as it uses the ML formulation of the target function and is based on the idea of freeing the model from the model bias imposed by the chemical energy restraints used in refinement. This approach for the calculation of error estimates is superior to the cross-validation approach: it reduces the phase error and increases the accuracy of molecular models, is more robust, provides clearer maps and may use a smaller portion of data for the test set for the calculation of R{sub free} or may leave it out completely.

  12. Variational cross-validation of slow dynamical modes in molecular kinetics

    PubMed Central

    Pande, Vijay S.

    2015-01-01

    Markov state models are a widely used method for approximating the eigenspectrum of the molecular dynamics propagator, yielding insight into the long-timescale statistical kinetics and slow dynamical modes of biomolecular systems. However, the lack of a unified theoretical framework for choosing between alternative models has hampered progress, especially for non-experts applying these methods to novel biological systems. Here, we consider cross-validation with a new objective function for estimators of these slow dynamical modes, a generalized matrix Rayleigh quotient (GMRQ), which measures the ability of a rank-m projection operator to capture the slow subspace of the system. It is shown that a variational theorem bounds the GMRQ from above by the sum of the first m eigenvalues of the system’s propagator, but that this bound can be violated when the requisite matrix elements are estimated subject to statistical uncertainty. This overfitting can be detected and avoided through cross-validation. These result make it possible to construct Markov state models for protein dynamics in a way that appropriately captures the tradeoff between systematic and statistical errors. PMID:25833563

  13. Recent literature on structural modeling, identification, and analysis

    NASA Technical Reports Server (NTRS)

    Craig, Roy R., Jr.

    1990-01-01

    The literature on the mathematical modeling of large space structures is first reviewed, with attention given to continuum models, model order reduction, substructuring, and computational techniques. System identification and mode verification are then discussed with reference to the verification of mathematical models of large space structures. In connection with analysis, the paper surveys recent research on eigensolvers and dynamic response solvers for large-order finite-element-based models.

  14. Analysis of recent patent literature on drying and dryers

    SciTech Connect

    Mujumdar, A.S.; Wu, J.

    2000-05-01

    A preliminary semi-quantitative analysis is made of the recent patent literature related to drying and dryers. US patents granted in the period January 1998 to June 1999 were examined. For this preliminary study, only the abstracts were used to classify the patents by subject area and arrive at some general conclusions. An in-depth overview covering a larger database and full texts of the patents is required to confirm the results presented.

  15. Longitudinal analysis of meta-analysis literatures in the database of ISI Web of Science

    PubMed Central

    Zhu, Changtai; Jiang, Ting; Cao, Hao; Sun, Wenguang; Chen, Zhong; Liu, Jinming

    2015-01-01

    The meta-analysis is regarded as an important evidence for making scientific decision. The database of ISI Web of Science collected a great number of high quality literatures including meta-analysis literatures. However, it is significant to understand the general characteristics of meta-analysis literatures to outline the perspective of meta-analysis. In this present study, we summarized and clarified some features on these literatures in the database of ISI Web of Science. We retrieved the meta-analysis literatures in the database of ISI Web of Science including SCI-E, SSCI, A&HCI, CPCI-S, CPCI-SSH, CCR-E, and IC. The annual growth rate, literature category, language, funding, index citation, agencies and countries/territories of the meta-analysis literatures were analyzed, respectively. A total of 95,719 records, which account for 0.38% (99% CI: 0.38%-0.39%) of all literatures, were found in the database. From 1997 to 2012, the annual growth rate of meta-analysis literatures was 18.18%. The literatures involved in many categories, languages, fundings, citations, publication agencies, and countries/territories. Interestingly, the index citation frequencies of the meta-analysis were significantly higher than that of other type literatures such as multi-centre study, randomize controlled trial, cohort study, case control study, and cases report (P<0.0001). The increasing numbers, intensively global influence and high citations revealed that the meta-analysis has been becoming more and more prominent in recent years. In future, in order to promote the validity of meta-analysis, the CONSORT and PRISMA standard should be continuously popularized in the field of evidence-based medicine. PMID:26064249

  16. Applicability of Monte Carlo cross validation technique for model development and validation using generalised least squares regression

    NASA Astrophysics Data System (ADS)

    Haddad, Khaled; Rahman, Ataur; A Zaman, Mohammad; Shrestha, Surendra

    2013-03-01

    SummaryIn regional hydrologic regression analysis, model selection and validation are regarded as important steps. Here, the model selection is usually based on some measurements of goodness-of-fit between the model prediction and observed data. In Regional Flood Frequency Analysis (RFFA), leave-one-out (LOO) validation or a fixed percentage leave out validation (e.g., 10%) is commonly adopted to assess the predictive ability of regression-based prediction equations. This paper develops a Monte Carlo Cross Validation (MCCV) technique (which has widely been adopted in Chemometrics and Econometrics) in RFFA using Generalised Least Squares Regression (GLSR) and compares it with the most commonly adopted LOO validation approach. The study uses simulated and regional flood data from the state of New South Wales in Australia. It is found that when developing hydrologic regression models, application of the MCCV is likely to result in a more parsimonious model than the LOO. It has also been found that the MCCV can provide a more realistic estimate of a model's predictive ability when compared with the LOO.

  17. The Bibliometric Analysis Of Literature On Museum Studies

    NASA Astrophysics Data System (ADS)

    Kuo, C. W.; Yang, Y. H.

    2015-08-01

    Museum studies, is the study of museums, museum curation, and how and why museums developed into their institutional role in education and culture through scientific, social, political and other related forces. The purpose of this study is to shed light on the application trends of the international literature related to museum studies on the SCIE, SSCI, and AHCI databases between 1995 and 2014 using a bibliometric technique and citation analysis. The results of this study reveal that influences of the literature related to museum studies on other subject areas continue to expand. Considering the publication of major countries, subject areas, journal and institutions, the results also discussed that the future trend through analysing most cited articles. Moreover, 12 core journal lists are identified by Bradford's law.

  18. Efficient generalized cross-validation with applications to parametric image restoration and resolution enhancement.

    PubMed

    Nguyen, N; Milanfar, P; Golub, G

    2001-01-01

    In many image restoration/resolution enhancement applications, the blurring process, i.e., point spread function (PSF) of the imaging system, is not known or is known only to within a set of parameters. We estimate these PSF parameters for this ill-posed class of inverse problem from raw data, along with the regularization parameters required to stabilize the solution, using the generalized cross-validation method (GCV). We propose efficient approximation techniques based on the Lanczos algorithm and Gauss quadrature theory, reducing the computational complexity of the GCV. Data-driven PSF and regularization parameter estimation experiments with synthetic and real image sequences are presented to demonstrate the effectiveness and robustness of our method. PMID:18255545

  19. A cross-validation of two differing measures of hypnotic depth.

    PubMed

    Pekala, Ronald J; Maurer, Ronald L

    2013-01-01

    Several sets of regression analyses were completed, attempting to predict 2 measures of hypnotic depth: the self-reported hypnotic depth score and hypnoidal state score from variables of the Phenomenology of Consciousness Inventory: Hypnotic Assessment Procedure (PCI-HAP). When attempting to predict self-reported hypnotic depth, an R of .78 with Study 1 participants shrank to an r of .72 with Study 2 participants, suggesting mild shrinkage for this more attributional measure of hypnotic depth. Attempting to predict hypnoidal state (an estimate of trance) using the same procedure, yielded an R of .56, that upon cross-validation shrank to an r of .48. These and other results suggest that, although there is some variance in common, the self-reported hypnotic depth score appears to be tapping a different construct from the hypnoidal state score. PMID:23153387

  20. Error criteria for cross validation in the context of chaotic time series prediction

    NASA Astrophysics Data System (ADS)

    Lim, Teck Por; Puthusserypady, Sadasivan

    2006-03-01

    The prediction of a chaotic time series over a long horizon is commonly done by iterating one-step-ahead prediction. Prediction can be implemented using machine learning methods, such as radial basis function networks. Typically, cross validation is used to select prediction models based on mean squared error. The bias-variance dilemma dictates that there is an inevitable tradeoff between bias and variance. However, invariants of chaotic systems are unchanged by linear transformations; thus, the bias component may be irrelevant to model selection in the context of chaotic time series prediction. Hence, the use of error variance for model selection, instead of mean squared error, is examined. Clipping is introduced, as a simple way to stabilize iterated predictions. It is shown that using the error variance for model selection, in combination with clipping, may result in better models.

  1. Fit-for-purpose bioanalytical cross-validation for LC-MS/MS assays in clinical studies.

    PubMed

    Xu, Xiaohui; Ji, Qin C; Jemal, Mohammed; Gleason, Carol; Shen, Jim X; Stouffer, Bruce; Arnold, Mark E

    2013-01-01

    The paradigm shift of globalized research and conducting clinical studies at different geographic locations worldwide to access broader patient populations has resulted in increased need of correlating bioanalytical results generated in multiple laboratories, often across national borders. Cross-validations of bioanalytical methods are often implemented to assure the equivalency of the bioanalytical results is demonstrated. Regulatory agencies, such as the US FDA and European Medicines Agency, have included the requirement of cross-validations in their respective bioanalytical validation guidance and guidelines. While those documents provide high-level expectations, the detailed implementation is at the discretion of each individual organization. At Bristol-Myers Squibb, we practice a fit-for-purpose approach for conducting cross-validations for small-molecule bioanalytical methods using LC-MS/MS. A step-by-step proposal on the overall strategy, procedures and technical details for conducting a successful cross-validation is presented herein. A case study utilizing the proposed cross-validation approach to rule out method variability as the potential cause for high variance observed in PK studies is also presented. PMID:23256474

  2. Acceptance of dying: a discourse analysis of palliative care literature.

    PubMed

    Zimmermann, Camilla

    2012-07-01

    The subject of death denial in the West has been examined extensively in the sociological literature. However, there has not been a similar examination of its "opposite", the acceptance of death. In this study, I use the qualitative method of discourse analysis to examine the use of the term "acceptance" of dying in the palliative care literature from 1970 to 2001. A Medline search was performed by combining the text words "accept or acceptance" with the subject headings "terminal care or palliative care or hospice care", and restricting the search to English language articles in clinical journals discussing acceptance of death in adults. The 40 articles were coded and analysed using a critical discourse analysis method. This paper focuses on the theme of acceptance as integral to palliative care, which had subthemes of acceptance as a goal of care, personal acceptance of healthcare workers, and acceptance as a facilitator of care. For patients and families, death acceptance is a goal that they can be helped to attain; for palliative care staff, acceptance of dying is a personal quality that is a precondition for effective practice. Acceptance not only facilitates the dying process for the patient and family, but also renders care easier. The analysis investigates the intertextuality of these themes with each other and with previous texts. From a Foucauldian perspective, I suggest that the discourse on acceptance of dying represents a productive power, which disciplines patients through apparent psychological and spiritual gratification, and encourages participation in a certain way to die. PMID:22513246

  3. Overdiagnosis of Bipolar Disorder: A Critical Analysis of the Literature

    PubMed Central

    Ghouse, Amna A.; Sanches, Marsal; Zunta-Soares, Giovana; Swann, Alan C.; Soares, Jair C.

    2013-01-01

    Bipolar disorder (BD) is considered one of the most disabling mental conditions, with high rates of morbidity, disability, and premature death from suicide. Although BD is often misdiagnosed as major depressive disorder, some attention has recently been drawn to the possibility that BD could be overdiagnosed in some settings. The present paper focuses on a critical analysis of the overdiagnosis issue among bipolar patients. It includes a review of the available literature findings, followed by some recommendations aiming at optimizing the diagnosis of BD and increasing its reliability. PMID:24348150

  4. Parallel processing of chemical information in a local area network--II. A parallel cross-validation procedure for artificial neural networks.

    PubMed

    Derks, E P; Beckers, M L; Melssen, W J; Buydens, L M

    1996-08-01

    This paper describes a parallel cross-validation (PCV) procedure, for testing the predictive ability of multi-layer feed-forward (MLF) neural networks models, trained by the generalized delta learning rule. The PCV program has been parallelized to operate in a local area computer network. Development and execution of the parallel application was aided by the HYDRA programming environment, which is extensively described in Part I of this paper. A brief theoretical introduction on MLF networks is given and the problems, associated with the validation of predictive abilities, will be discussed. Furthermore, this paper comprises a general outline of the PCV program. Finally, the parallel PCV application is used to validate the predictive ability of an MLF network modeling a chemical non-linear function approximation problem which is described extensively in the literature. PMID:8799999

  5. The next generation of literature analysis: integration of genomic analysis into text mining.

    PubMed

    Scherf, Matthias; Epple, Anton; Werner, Thomas

    2005-09-01

    Text-mining systems are indispensable tools to reduce the increasing flux of information in scientific literature to topics pertinent to a particular interest in focus. Most of the scientific literature is published as unstructured free text, complicating the development of data processing tools, which rely on structured information. To overcome the problems of free text analysis, structured, hand-curated information derived from literature is integrated in text-mining systems to improve precision and recall. In this paper several text-mining approaches are reviewed and the next step in development of text-mining systems, which is based on a concept of multiple lines of evidence, is described: results from literature analysis are combined with evidence from experiments and genome analysis to improve the accuracy of results and to generate additional knowledge beyond what is known solely from literature. PMID:16212776

  6. The German Bight: Preparing for Sentinel-3 wit a Cross Validation of SAR and PLRM CryoSat-2 Altimeter Data

    NASA Astrophysics Data System (ADS)

    Fenoglio-Marc, L.; Buchhaupt, C.; Dinardo, S.; Scharroo, R.; Benveniste, J.; Becker, M.

    2015-12-01

    As preparatory work for Sentinel-3, we retrieve the three geophysical parameters: sea surface height (SSH), significant wave height (SWH) and wind speed at 10 meters height (U10) from CryoSat-2 data in our validation region in North Sea. The CryoSat-2 SAR echoes are processed with a coherent and an incoherent processing to generate SAR and PLRM data respectively. We derive precision and accuracy at 1 Hz in open ocean, at distances larger than 10 kilometres from the coast. A cross-validation of the SAR and PLRM altimeter data is performed to investigate the differences between the products. Look Up Tables (LUT) are applied in both schemes to correct for approximations applied in both retracking procedures. Additionally a numerical retracker is used in PLRM. The results are validated against in-situ and model data. The analysis is performed for a period of four years, from July 2010 to May 2014. The regional cross-validation analysis confirms the good consistency between PLRM and SAR data. Using LUT the agreement for the sea wave heights increases by 10%.

  7. Credible Intervals for Precision and Recall Based on a K-Fold Cross-Validated Beta Distribution.

    PubMed

    Wang, Yu; Li, Jihong

    2016-08-01

    In typical machine learning applications such as information retrieval, precision and recall are two commonly used measures for assessing an algorithm's performance. Symmetrical confidence intervals based on K-fold cross-validated t distributions are widely used for the inference of precision and recall measures. As we confirmed through simulated experiments, however, these confidence intervals often exhibit lower degrees of confidence, which may easily lead to liberal inference results. Thus, it is crucial to construct faithful confidence (credible) intervals for precision and recall with a high degree of confidence and a short interval length. In this study, we propose two posterior credible intervals for precision and recall based on K-fold cross-validated beta distributions. The first credible interval for precision (or recall) is constructed based on the beta posterior distribution inferred by all K data sets corresponding to K confusion matrices from a K-fold cross-validation. Second, considering that each data set corresponding to a confusion matrix from a K-fold cross-validation can be used to infer a beta posterior distribution of precision (or recall), the second proposed credible interval for precision (or recall) is constructed based on the average of K beta posterior distributions. Experimental results on simulated and real data sets demonstrate that the first credible interval proposed in this study almost always resulted in degrees of confidence greater than 95%. With an acceptable degree of confidence, both of our two proposed credible intervals have shorter interval lengths than those based on a corrected K-fold cross-validated t distribution. Meanwhile, the average ranks of these two credible intervals are superior to that of the confidence interval based on a K-fold cross-validated t distribution for the degree of confidence and are superior to that of the confidence interval based on a corrected K-fold cross-validated t distribution for the

  8. Inversion of velocity map ion images using iterative regularization and cross validation

    NASA Astrophysics Data System (ADS)

    Renth, F.; Riedel, J.; Temps, F.

    2006-03-01

    Two methods for improved inversion of velocity map images are presented. Both schemes use two-dimensional basis functions to perform the iteratively regularized inversion of the imaging equation in matrix form. The quality of the reconstructions is improved by taking into account the constraints that are derived from prior knowledge about the experimental data, such as non-negativity and noise statistics, using (i) the projected Landweber [Am. J. Math. 73, 615 (1951)] and (ii) the Richardson-Lucy [J. Opt. Soc. Am. 62, 55 (1972); Astron. J. 79, 745 (1974)] algorithms. It is shown that the optimum iteration count, which plays the role of a regularization parameter, can be determined by partitioning the image into quarters or halves and a subsequent cross validation of the inversion results. The methods are tested with various synthetic velocity map images and with velocity map images of the H-atom fragments produced in the photodissociation of HBr at λ =243.1nm using a (2+1) resonantly enhanced multiphoton ionization (REMPI) detection scheme. The versatility of the method, which is only determined by the choice of basis functions, is exploited to take into account the photoelectron recoil that leads to a splitting and broadening of the velocity distribution in the two product channels, and to successfully reconstruct the deconvolved velocity distribution. The methods can also be applied to the cases where higher order terms in the Legendre expansion of the angular distribution are present.

  9. Approximate l-fold cross-validation with Least Squares SVM and Kernel Ridge Regression

    SciTech Connect

    Edwards, Richard E; Zhang, Hao; Parker, Lynne Edwards; New, Joshua Ryan

    2013-01-01

    Kernel methods have difficulties scaling to large modern data sets. The scalability issues are based on computational and memory requirements for working with a large matrix. These requirements have been addressed over the years by using low-rank kernel approximations or by improving the solvers scalability. However, Least Squares Support VectorMachines (LS-SVM), a popular SVM variant, and Kernel Ridge Regression still have several scalability issues. In particular, the O(n^3) computational complexity for solving a single model, and the overall computational complexity associated with tuning hyperparameters are still major problems. We address these problems by introducing an O(n log n) approximate l-fold cross-validation method that uses a multi-level circulant matrix to approximate the kernel. In addition, we prove our algorithm s computational complexity and present empirical runtimes on data sets with approximately 1 million data points. We also validate our approximate method s effectiveness at selecting hyperparameters on real world and standard benchmark data sets. Lastly, we provide experimental results on using a multi-level circulant kernel approximation to solve LS-SVM problems with hyperparameters selected using our method.

  10. Cross-Validating Measures of Technology Integration: A First Step toward Examining Potential Relationships between Technology Integration and Student Achievement

    ERIC Educational Resources Information Center

    Hancock, Robert; Knezek, Gerald; Christensen, Rhonda

    2007-01-01

    The use of proper measurements of diffusion of information technology as an innovation are essential to determining if progress is being made in state, regional, and national level programs. This project provides a national level cross validation study of several instruments commonly used to assess the effectiveness of technology integration in…

  11. A Cross-Validation of Paulson's Discriminant Function-Derived Scales for Identifying "At Risk" Child-Abusive Parents.

    ERIC Educational Resources Information Center

    Beal, Don; And Others

    1984-01-01

    When the six scales were cross-validated on an independent sample from the population of child-abusing parents, significant shrinkage in the accuracy of prediction was found. The use of the special subscales for identifying "at risk" parents in prenatal clinics, pediatric clinics, and mental health centers as originally suggested by Paulson and…

  12. Estimating the Coefficient of Cross-validity in Multiple Regression: A Comparison of Analytical and Empirical Methods.

    ERIC Educational Resources Information Center

    Kromrey, Jeffrey D.; Hines, Constance V.

    1996-01-01

    The accuracy of three analytical formulas for shrinkage estimation and four empirical techniques were investigated in a Monte Carlo study of the coefficient of cross-validity in multiple regression. Substantial statistical bias was evident for all techniques except the formula of M. W. Brown (1975) and multicross-validation. (SLD)

  13. Population Validity and Cross-Validity: Applications of Distribution Theory for Testing Hypotheses, Setting Confidence Intervals, and Determining Sample Size

    ERIC Educational Resources Information Center

    Algina, James; Keselman, H. J.

    2008-01-01

    Applications of distribution theory for the squared multiple correlation coefficient and the squared cross-validation coefficient are reviewed, and computer programs for these applications are made available. The applications include confidence intervals, hypothesis testing, and sample size selection. (Contains 2 tables.)

  14. How Nonrecidivism Affects Predictive Accuracy: Evidence from a Cross-Validation of the Ontario Domestic Assault Risk Assessment (ODARA)

    ERIC Educational Resources Information Center

    Hilton, N. Zoe; Harris, Grant T.

    2009-01-01

    Prediction effect sizes such as ROC area are important for demonstrating a risk assessment's generalizability and utility. How a study defines recidivism might affect predictive accuracy. Nonrecidivism is problematic when predicting specialized violence (e.g., domestic violence). The present study cross-validates the ability of the Ontario…

  15. A Cross-Validation of easyCBM[R] Mathematics Cut Scores in Oregon: 2009-2010. Technical Report #1104

    ERIC Educational Resources Information Center

    Anderson, Daniel; Alonzo, Julie; Tindal, Gerald

    2011-01-01

    In this technical report, we document the results of a cross-validation study designed to identify optimal cut-scores for the use of the easyCBM[R] mathematics test in Oregon. A large sample, randomly split into two groups of roughly equal size, was used for this study. Students' performance classification on the Oregon state test was used as the…

  16. [Treatment of type 2 diabetes mellitus oral Chinese patent medicine literature metrology analysis].

    PubMed

    Cui, Tong-hua; Li, Yuan-yuan

    2012-09-01

    The CBM, CNKI database 1979-2012 included oral Chinese patent medicine treatment diabetes literature, and the literature published time, periodical distribution, sources of literature and statistical analysis, to explore the treatment of type 2 diabetes medicine clinical literature distribution law and development trend, as in diabetes research related to the clinical and scientific research personnel to provide reference. PMID:23236770

  17. Issues in benchmarking human reliability analysis methods : a literature review.

    SciTech Connect

    Lois, Erasmia; Forester, John Alan; Tran, Tuan Q.; Hendrickson, Stacey M. Langfitt; Boring, Ronald L.

    2008-04-01

    There is a diversity of human reliability analysis (HRA) methods available for use in assessing human performance within probabilistic risk assessment (PRA). Due to the significant differences in the methods, including the scope, approach, and underlying models, there is a need for an empirical comparison investigating the validity and reliability of the methods. To accomplish this empirical comparison, a benchmarking study is currently underway that compares HRA methods with each other and against operator performance in simulator studies. In order to account for as many effects as possible in the construction of this benchmarking study, a literature review was conducted, reviewing past benchmarking studies in the areas of psychology and risk assessment. A number of lessons learned through these studies are presented in order to aid in the design of future HRA benchmarking endeavors.

  18. Computing fuzzy associations for the analysis of biological literature.

    PubMed

    Perez-Iratxeta, Carolina; Keer, Harindar S; Bork, Peer; Andrade, Miguel A

    2002-06-01

    The increase of information in biology makes it difficult for researchers in any field to keep current with the literature. The MEDLINE database of scientific abstracts can be quickly scanned using electronic mechanisms. Potentially interesting abstracts can be selected by matching words joined by Boolean operators. However this means of selecting documents is not optimal. Nonspecific queries have to be effected, resulting in large numbers of irrelevant abstracts that have to be manually scanned To facilitate this analysis, we have developed a system that compiles a summary of subjects and related documents on the results of a MEDLINE query. For this, we have applied a fuzzy binary relation formalism that deduces relations between words present in a set of abstracts preprocessed with a standard grammatical tagger. Those relations are used to derive ensembles of related words and their associated subsets of abstracts. The algorithm can be used publicly at http:// www.bork.embl-heidelberg.de/xplormed/. PMID:12074170

  19. Issues in Benchmarking Human Reliability Analysis Methods: A Literature Review

    SciTech Connect

    Ronald L. Boring; Stacey M. L. Hendrickson; John A. Forester; Tuan Q. Tran; Erasmia Lois

    2010-06-01

    There is a diversity of human reliability analysis (HRA) methods available for use in assessing human performance within probabilistic risk assessments (PRA). Due to the significant differences in the methods, including the scope, approach, and underlying models, there is a need for an empirical comparison investigating the validity and reliability of the methods. To accomplish this empirical comparison, a benchmarking study comparing and evaluating HRA methods in assessing operator performance in simulator experiments is currently underway. In order to account for as many effects as possible in the construction of this benchmarking study, a literature review was conducted, reviewing past benchmarking studies in the areas of psychology and risk assessment. A number of lessons learned through these studies are presented in order to aid in the design of future HRA benchmarking endeavors.

  20. Ageism in Literature. An Analysis Kit for Teachers and Librarians.

    ERIC Educational Resources Information Center

    Dodson, Anita E.; Hause, Judith B.

    This kit contains two components which will help teachers and librarians become aware of the problems of ageism in literature and examine materials currently in use. The first component, entitled "Problems of Ageism in Literature," is a brief, but comprehensive, position paper on the particular ways in which literature may adversely affect the…

  1. Initial Factor Analysis and Cross-Validation of the Multicultural Teaching Competencies Inventory

    ERIC Educational Resources Information Center

    Prieto, Loreto R.

    2012-01-01

    The Multicultural Teaching Competencies Inventory (MTCI) contains items based on the tri-parte model of cultural competencies established by Sue and associates (Sue et al., 1992, 1982, 2003) that identify multicultural Awareness, Knowledge, and Skill as central characteristics of a culturally sensitive professional. The development and validation…

  2. Confirmatory Factor Analysis of the Assessment for Living and Learning Scale: A Cross-Validation Investigation.

    ERIC Educational Resources Information Center

    Denzine, Gypsy M.; Kowalski, Gerard J.

    2002-01-01

    The Assessment for Living and Learning (ALL; G.M. Denzine, 1994, 1996) measures college students' perceptions of the academic climate in their residence hall. Confirmatory factor analyses results reveal that the data did not provide an adequate fit to the measurement model underlying the ALL. A revised model was tested and is recommended for use.…

  3. Meta-analysis of ionic liquid literature and toxicology.

    PubMed

    Heckenbach, Mary E; Romero, Felicia N; Green, Matthew D; Halden, Rolf U

    2016-05-01

    A meta-analysis was conducted to compare the total amount of ionic liquid (IL) literature (n = 39,036) to the body of publications dealing with IL toxicity (n = 213) with the goal of establishing the state of knowledge and existing information gaps. Additionally, patent literature pertaining to issued patents utilizing ILs (n = 3358) or dealing with IL toxicity (n = 112) were analyzed. Total publishing activity and patent count served to gauge research activity, industrial usage and toxicology knowledge of ILs. Five of the most commonly studied IL cations were identified and used to establish a relationship between toxicity data and potential of commercial use: imidazolium, ammonium, phosphonium, pyridinium, and pyrrolidinium. Toxicology publications for all IL cations represented 0.55% ± 0.27% of the total publishing activity; compared with other industrial chemicals, these numbers indicate that there is still a paucity of studies on the adverse effects of this class of chemical. Toxicity studies on ILs were dominated by the use of in vitro models (18%) and marine bacteria (15%) as studied biological systems. Whole animal studies (n = 87) comprised 31% of IL toxicity studies, with a subset of in vivo mammalian models consisting of 8%. Human toxicology data were found to be limited to in vitro analyses, indicating substantial knowledge gaps. Risks from long-term and chronic low-level exposure to ILs have not been established yet for any model organisms, reemphasizing the need to fill crucial knowledge gaps concerning human health effects and the environmental safety of ILs. Adding to the existing knowledge of the molecular toxicity characteristics of ILs can help inform the design of greener, less toxic and more benign IL technologies. PMID:26907595

  4. Cross-validation of a composite pain scale for preschool children within 24 hours of surgery.

    PubMed

    Suraseranivongse, S; Santawat, U; Kraiprasit, K; Petcharatana, S; Prakkamodom, S; Muntraporn, N

    2001-09-01

    This study was designed to cross-validate a composite measure of the pain scales CHEOPS (Children's Hospital of Eastern Ontario Pain Scale), OPS (Objective Pain Scale, simplified for parent use by replacing blood pressure measurement with observation of body language or posture), TPPPS (Toddler Preschool Postoperative Pain Scale) and FLACC (Face, Legs, Activity, Cry, Consolability) in 167 Thai children aged 1-5.5 yr. The pain scales were translated and tested for content, construct and concurrent validity, including inter-rater and intra-rater reliabilities. Discriminative validity in immediate and persistent pain for the age groups < or =3 and >3 yr were also studied. The children's behaviour was videotaped before and after surgery, before analgesia had been given in the post-anaesthesia care unit (PACU), and on the ward. Four observers then rated pain behaviour from rearranged videotapes. The decision to treat pain was based on routine practice and was made by a researcher unaware of the rating procedure. All tools had acceptable content validity and excellent inter-rater and intra-rater reliabilities (intraclass correlation >0.9 and >0.8 respectively). Construct validity was determined by the ability to differentiate the group with no pain before surgery and a high pain level after surgery, before analgesia (P<0.001). The positive correlations among all scales in the PACU and on the ward (r=0.621-0.827, P<0.0001) supported concurrent validity. Use of the kappa statistic indicated that CHEOPS yielded the best agreement with the routine decision to treat pain. The younger and older age groups both yielded very good agreement in the PACU but only moderate agreement on the ward. On the basis of data from this study, we recommend CHEOPS as a valid, reliable and practical tool. PMID:11517123

  5. The brief cognitive assessment tool (BCAT): cross-validation in a community dwelling older adult sample.

    PubMed

    MacDougall, Elizabeth E; Mansbach, William E; Clark, Kristen; Mace, Ryan A

    2014-08-13

    ABSTRACT Background: Cognitive impairment is underrecognized and misdiagnosed among community-dwelling older adults. At present, there is no consensus about which cognitive screening tool represents the "gold standard." However, one tool that shows promise is the Brief Cognitive Assessment Tool (BCAT), which was originally validated in an assisted living sample and contains a multi-level memory component (e.g. word lists and story recall items) and complex executive functions features (e.g. judgment, set-shifting, and problem-solving). Methods: The present study cross-validated the BCAT in a sample of 75 community-dwelling older adults. Participants completed a short battery of several individually administered cognitive tests, including the BCAT and the Montreal Cognitive Assessment (MoCA). Using a very conservative MoCA cut score of <26, the base rate of cognitive impairment in this sample was 35%. Results: Adequate internal consistency and strong evidence of construct validity were found. A receiver operating characteristic (ROC) curve was calculated from sensitivity and 1-specificity values for the classification of cognitively impaired versus cognitively unimpaired. The area under the ROC curve (AUC) for the BCAT was .90, p < 0.001, 95% CI [0.83, 0.97]. A BCAT cut-score of 45 (scores below 45 suggesting cognitive impairment) resulted in the best balance between sensitivity (0.81) and specificity (0.80). Conclusions: A BCAT cut-score can be used for identifying persons to be referred to appropriate healthcare professionals for more comprehensive cognitive assessment. In addition, guidelines are provided for clinicians to interpret separate BCAT memory and executive dysfunction component scores. PMID:25115580

  6. Primary intramedullary neurocytoma: Case report and literature analysis

    PubMed Central

    Montano, Nicola; Di Bonaventura, Rina; Coli, Antonella; Fernandez, Eduardo; Meglio, Mario

    2015-01-01

    Background: Primary intramedullary neurocytoma is extremely rare. Due to its rarity, it is difficult to collect a wide series in a single institution to perform a survival analysis and give indications about prognosis and treatment. Case Description: Here, we report on a case of a 37-year-old woman with primary intramedullary neurocytoma and perform a systematic statistical analysis of cases reported in the literature. Of 21 articles found, 15 studies and the present case (22 patients) were eligible for the analysis. We studied the impact of age, sex, number of involved levels (≤2 vs. >2), entity of resection, postoperative radiotherapy (RT), proliferation index (Ki67) on the neurological outcome of patients, and on the recurrence of the tumor. Comparison of categorical variables was performed by the χ2 statistic. The Kaplan–Meier curves were plotted to calculate the progression-free survival (PFS) of these patients. P < 0.05 was considered as statistically significant. The 1-year PFS was 95.45% and the 2-year PFS was 86.36%. A gross total resection was associated to a worsening of the neurological function with no impact on the tumor recurrence. Adjuvant RT significantly improved the neurological function. A lower Ki67 was strongly associated with a lower tumor recurrence. Conclusions: We think that the goal of the surgery should be to preserve a good neurological function even if a residual tumor has to be left. Ki67 should be always evaluated due to its impact on the prognosis. Although adjuvant RT significantly improved the neurological function, its role in preventing the tumor recurrence is not clearly defined. PMID:26673057

  7. Literature review of environmental qualification of safety-related electric cables: Literature analysis and appendices. Volume 2

    SciTech Connect

    Lofaro, R.; Bowerman, B.; Carbonaro, J.

    1996-04-01

    In support of the US NRC Environmental Qualification (EQ) Research Program, a literature review was performed to identify past relevant work that could be used to help fully or partially resolve issues of interest related to the qualification of low-voltage electric cable. A summary of the literature reviewed is documented in Volume 1 of this report. In this, Volume 2 of the report, dossiers are presented which document the issues selected for investigation in this program, along with recommendations for future work to resolve the issues, when necessary. The dossiers are based on an analysis of the literature reviewed, as well as expert opinions. This analysis includes a critical review of the information available from past and ongoing work in thirteen specific areas related to EQ. The analysis for each area focuses on one or more questions which must be answered to consider a particular issue resolved. Results of the analysis are presented, along with recommendations for future work. The analysis is documented in the form of a dossier for each of the areas analyzed.

  8. Models for Planning. Analysis of Literature and Selected Bibliography. Analysis and Bibliography Series, No. 5.

    ERIC Educational Resources Information Center

    ERIC Clearinghouse on Educational Management, Eugene, OR.

    This review analyzes current research trends in the application of planning models to broad educational systems. Planning models reviewed include systems approach models, simulation models, operational gaming, linear programing, Markov chain analysis, dynamic programing, and queuing techniques. A 77-item bibliography of recent literature is…

  9. Embedded Performance Validity Measures with Postdeployment Veterans: Cross-Validation and Efficiency with Multiple Measures.

    PubMed

    Shura, Robert D; Miskey, Holly M; Rowland, Jared A; Yoash-Gantz, Ruth E; Denning, John H

    2016-01-01

    Embedded validity measures support comprehensive assessment of performance validity. The purpose of this study was to evaluate the accuracy of individual embedded measures and to reduce them to the most efficient combination. The sample included 212 postdeployment veterans (average age = 35 years, average education = 14 years). Thirty embedded measures were initially identified as predictors of Green's Word Memory Test (WMT) and were derived from the California Verbal Learning Test-Second Edition (CVLT-II), Conners' Continuous Performance Test-Second Edition (CPT-II), Trail Making Test, Stroop, Wisconsin Card Sorting Test-64, the Wechsler Adult Intelligence Scale-Third Edition Letter-Number Sequencing, Rey Complex Figure Test (RCFT), Brief Visuospatial Memory Test-Revised, and the Finger Tapping Test. Eight nonoverlapping measures with the highest area-under-the-curve (AUC) values were retained for entry into a logistic regression analysis. Embedded measure accuracy was also compared to cutoffs found in the existing literature. Twenty-one percent of the sample failed the WMT. Previously developed cutoffs for individual measures showed poor sensitivity (SN) in the current sample except for the CPT-II (Total Errors, SN = .41). The CVLT-II (Trials 1-5 Total) showed the best overall accuracy (AUC = .80). After redundant measures were statistically eliminated, the model included the RCFT (Recognition True Positives), CPT-II (Total Errors), and CVLT-II (Trials 1-5 Total) and increased overall accuracy compared with the CVLT-II alone (AUC = .87). The combination of just 3 measures from the CPT-II, CVLT-II, and RCFT was the most accurate/efficient in predicting WMT performance. PMID:26375185

  10. A Critical Discourse Analysis of Teachers' Views on LGBT Literature

    ERIC Educational Resources Information Center

    Schieble, Melissa

    2012-01-01

    This article presents a thread of discussion posted to a web-based forum in the context of a children's literature course in one teacher education program in the USA. Participants in the virtual discussion include three preservice elementary teachers and the course instructor (author) on the subject of bringing lesbian, gay, bisexual and…

  11. An Analysis of Contemporary Literature on Strategy in Education

    ERIC Educational Resources Information Center

    Eacott, Scott

    2008-01-01

    In this paper, contemporary literature on strategy in education is examined in an integrative and analytical manner. To achieve this, an empirical investigation on strategy in education was undertaken. As the goal is to understand and propose specific research directions, the findings are both descriptive and analytical. Initially, peer reviewed…

  12. Research on Rural Veterans: An Analysis of the Literature

    ERIC Educational Resources Information Center

    Weeks, William B.; Wallace, Amy E.; West, Alan N.; Heady, Hilda R.; Hawthorne, Kara

    2008-01-01

    Context: The Veterans Health Administration (VA) provides comprehensive health care services to veterans across the United States. Recently, the VA established an Office of Rural Health to address the health care needs of rural veterans. Purpose: To review the literature on rural veterans' health care needs in order to identify areas for future…

  13. British Literature: Discipline Analysis. Women in the Curriculum Series.

    ERIC Educational Resources Information Center

    Wolfson, Susan

    This essay examines the ways in which British literature, as a discipline, has been influenced by feminist scholarship and research into the areas of gender and sexuality. It reports that feminist literary criticism took definitive shape in the late 1960s as part of the women's liberation movement, and that a central concern of this first…

  14. Qualitative Analysis Techniques for the Review of the Literature

    ERIC Educational Resources Information Center

    Onwuegbuzie, Anthony J.; Leech, Nancy L.; Collins, Kathleen M. T.

    2012-01-01

    In this article, we provide a framework for analyzing and interpreting sources that inform a literature review or, as it is more aptly called, a research synthesis. Specifically, using Leech and Onwuegbuzie's (2007, 2008) frameworks, we delineate how the following four major source types inform research syntheses: talk, observations,…

  15. The Adolescent Religious Coping Scale: Development, Validation, and Cross-Validation

    ERIC Educational Resources Information Center

    Bjorck, Jeffrey P.; Braese, Robert W.; Tadie, Joseph T.; Gililland, David D.

    2010-01-01

    Research literature on adolescent coping is growing, but typically such studies have ignored religious coping strategies and their potential impact on functioning. To address this lack, we developed the Adolescent Religious Coping Scale and used its seven subscales to examine the relationship between religious coping and emotional functioning. A…

  16. Citation analysis in the literature of tropical medicine.

    PubMed Central

    Brennen, P W; Davey, W P

    1978-01-01

    A brief historical account of tropical medicine as a science is given, followed by a short survey of the development of the literature in the field. The citations indexed in Tropical Diseases Bulletin for a forty-eight-month period (1972-1975) were analyzed according to the journal in which they were published and the language in which they appeared. The results of the study conformed to Bradford's law of bibliographic distribution. The reference scattering coefficient was determined to be 0.504, which indicated a high concentration of articles in relatively few journal titles. A rank order list of sixty-one journal titles is given in an appendix. The study showed English to be the most important language in the literature in terms of productivity. The results of the study may be used as an acquisition tool for developing a journal collection in tropical medicine. PMID:626794

  17. Vulnerabilities—bibliometric analysis and literature review of evolving concepts

    NASA Astrophysics Data System (ADS)

    Giupponi, Carlo; Biscaro, Claudio

    2015-12-01

    In this work we analyse the evolution of the vulnerability concept in the research streams of climate change adaptation (CCA) and disaster risk reduction (DRR). We combine a traditional literature review with data mining procedures applied to bibliographic databases to reconstruct the history of the concept within various research topics, showing its evolution and convergences over time. To do that, we integrate different methods combining machine learning algorithms with network and cluster analyses to examine a set of 3757 articles, analysing their distinctive features and similarities on the basis of their contents as well as co-authorships. Bibliometric analyses enable the identification of different communities of articles, pinpointing key papers and authors, while literature review makes it possible to assess the concept of vulnerability evolved within and beyond research communities and scientific networks. Moreover, this work examines the role played by documents published by UN institutions (UNDRO, UNISDR, IPCC) in contributing to the evolution of vulnerability and related concepts. Results show that signs of convergence are evident between the two research streams, and that the IPCC reports have played a major role in proposing solutions for unifying definitions of vulnerability. We observe that the phases of preparation of the IPCC reports are very rich in methodological and terminological developments, while after publication, the literature shows evident signs of propagation of the proposed concepts. The DRR research stream developed before the research stream on CCA, but the latter flourished rapidly and became much larger in terms of number of publications. Nevertheless, in terms of contents, adaptation studies and the IPCC have shown increasing adoption of the concepts developed within the disaster research stream, in particular with regard to the interpretation of vulnerability as one of the dimensions of risk.

  18. An Investigation of Distance Education in North American Research Literature Using Co-Word Analysis

    ERIC Educational Resources Information Center

    Ritzhaupt, Albert D.; Stewart, Michelle; Smith, Patryce; Barron, Ann E.

    2010-01-01

    The field of distance education is composed of a multiplicity of topics leading to a vast array of research literature. However, the research does not provide a chronological picture of the topics it addresses, making it difficult to develop an overview of the evolution and trends in the literature. To address this issue, a co-word analysis was…

  19. The Secrets of Scheherazade: Toward a Functional Analysis of Imaginative Literature

    ERIC Educational Resources Information Center

    Grant, Lyle K.

    2005-01-01

    A functional analysis of selected aspects of imaginative literature is presented. Reading imaginative literature is described as a process in which the reader makes indirect contact with the contingencies operating on the behavior of story characters. A functional story grammar is proposed in which the reader's experience with a story is…

  20. The Wartegg Zeichen Test: A Literature Overview and a Meta-Analysis of Reliability and Validity

    ERIC Educational Resources Information Center

    Soilevuo Gronnerod, Jarna; Gronnerod, Cato

    2012-01-01

    All available studies on the Wartegg Zeichen Test (WZT; Wartegg, 1939) were collected and evaluated through a literature overview and a meta-analysis. The literature overview shows that the history of the WZT reflects the geographical and language-based processes of marginalization where relatively isolated traditions have lived and vanished in…

  1. Can Stylistic Analysis Help the EFL Learner to Read Literature?

    ERIC Educational Resources Information Center

    Gower, Roger

    1986-01-01

    Discusses whether the methods of linguistic analysis can help students of English as a second language (ESL) as they struggle with a complex piece of creative writing. Argues that stylistic analysis, instead of aiding an ESL student's reading, actually impedes it because it is alien to the spirit in which persons read. (SED)

  2. Cross-Validation of Levenson's Psychopathy Scale in a Sample of Federal Female Inmates

    ERIC Educational Resources Information Center

    Brinkley, Chad A.; Diamond, Pamela M.; Magaletta, Philip R.; Heigel, Caron P.

    2008-01-01

    Levenson, Kiehl, and Fitzpatrick's Self-Report Psychopathy Scale (LSRPS) is evaluated to determine the factor structure and concurrent validity of the instrument among 430 federal female inmates. Confirmatory factor analysis fails to validate the expected 2-factor structure. Subsequent exploratory factor analysis reveals a 3-factor structure…

  3. Review and bibliometric analysis of published literature citing data produced by the Gap Analysis Program (GAP)

    USGS Publications Warehouse

    Ratz, Joan M.; Conk, Shannon J.

    2014-01-01

    The Gap Analysis Program (GAP) of the U.S. Geological Survey (USGS) produces geospatial datasets providing information on land cover, predicted species distributions, stewardship (ownership and conservation status), and an analysis dataset which synthesizes the other three datasets. The intent in providing these datasets is to support the conservation of biodiversity. The datasets are made available at no cost. The initial datasets were created at the state level. More recent datasets have been assembled at regional and national levels. GAP entered an agreement with the Policy Analysis and Science Assistance branch of the USGS to conduct an evaluation to describe the effect that using GAP data has on those who utilize the datasets (GAP users). The evaluation project included multiple components: a discussion regarding use of GAP data conducted with participants at a GAP conference, a literature review of publications that cited use of GAP data, and a survey of GAP users. The findings of the published literature search were used to identify topics to include on the survey. This report summarizes the literature search, the characteristics of the resulting set of publications, the emergent themes from statements made regarding GAP data, and a bibliometric analysis of the publications. We cannot claim that this list includes all publications that have used GAP data. Given the time lapse that is common in the publishing process, more recent datasets may be cited less frequently in this list of publications. Reports or products that used GAP data may be produced but never published in print or released online. In that case, our search strategies would not have located those reports. Authors may have used GAP data but failed to cite it in such a way that the search strategies we used would have located those publications. These are common issues when using a literature search as part of an evaluation project. Although the final list of publications we identified is not

  4. DYSMICROBISM, INFLAMMATORY BOWEL DISEASE AND THYROIDITIS: ANALYSIS OF THE LITERATURE.

    PubMed

    Tomasello, G; Tralongo, P; Amoroso, F; Damiani, P; Sinagra, E; Noto, M; Arculeo, V M; Jurjus Zein, R; Saad, W; Jurjus, A; Gerbino, A; Leone, A

    2015-01-01

    The human body is colonized by a large number of microbes that are collectively referred to as the microbiota. They interact with the hosting organism and some do contribute to the physiological maintenance of the general good health thru regulation of some metabolic processes while some others are essential for the synthesis of vitamins and short-chain fatty acids. The abnormal variation, in the quality and/or quantity of individual bacterial species residing in the gastro-intestinal tract, is called “dysmicrobism”. The immune system of the host will respond to these changes at the intestinal mucosa level which could lead to Inflammatory Bowel Diseases (IBD). This inflammatory immune response could subsequently extend to other organs and systems outside the digestive tract such as the thyroid, culminating in thyroiditis. The goal of the present study is to review and analyze data reported in the literature about thyroiditis associated with inflammatory bowel diseases such as Ulcerative Colitis (UC) and Crohn’s Disease (CD). It was reported that similarities of some molecular bacterial components with molecular components of the host are considered among the factors causing IBD through an autoimmune reaction which could involve other non-immune cell types. The axis dysmicrobism-IBD-autoimmune reaction will be investigated as a possible etiopathogenic mechanism to Autoimmune Thyroiditis. If such is the case, then the employment of specific probiotic strains may represent a useful approach to moderate the immune system. PMID:26122213

  5. Cross validation of gas chromatography-flame photometric detection and gas chromatography-mass spectrometry methods for measuring dialkylphosphate metabolites of organophosphate pesticides in human urine.

    PubMed

    Prapamontol, Tippawan; Sutan, Kunrunya; Laoyang, Sompong; Hongsibsong, Surat; Lee, Grace; Yano, Yukiko; Hunter, Ronald Elton; Ryan, P Barry; Barr, Dana Boyd; Panuwet, Parinya

    2014-01-01

    We report two analytical methods for the measurement of dialkylphosphate (DAP) metabolites of organophosphate pesticides in human urine. These methods were independently developed/modified and implemented in two separate laboratories and cross validated. The aim was to develop simple, cost effective, and reliable methods that could use available resources and sample matrices in Thailand and the United States. While several methods already exist, we found that direct application of these methods required modification of sample preparation and chromatographic conditions to render accurate, reliable data. The problems encountered with existing methods were attributable to urinary matrix interferences, and differences in the pH of urine samples and reagents used during the extraction and derivatization processes. Thus, we provide information on key parameters that require attention during method modification and execution that affect the ruggedness of the methods. The methods presented here employ gas chromatography (GC) coupled with either flame photometric detection (FPD) or electron impact ionization-mass spectrometry (EI-MS) with isotopic dilution quantification. The limits of detection were reported from 0.10ng/mL urine to 2.5ng/mL urine (for GC-FPD), while the limits of quantification were reported from 0.25ng/mL urine to 2.5ng/mL urine (for GC-MS), for all six common DAP metabolites (i.e., dimethylphosphate, dimethylthiophosphate, dimethyldithiophosphate, diethylphosphate, diethylthiophosphate, and diethyldithiophosphate). Each method showed a relative recovery range of 94-119% (for GC-FPD) and 92-103% (for GC-MS), and relative standard deviations (RSD) of less than 20%. Cross-validation was performed on the same set of urine samples (n=46) collected from pregnant women residing in the agricultural areas of northern Thailand. The results from split sample analysis from both laboratories agreed well for each metabolite, suggesting that each method can produce

  6. Software Engineering as Seen through Its Research Literature: A Study in Co-Word Analysis.

    ERIC Educational Resources Information Center

    Coulter, Neal; Monarch, Ira; Konda, Suresh

    1998-01-01

    This empirical research demonstrates the effectiveness of content analysis to map the research literature of the software engineering discipline. Co-word analysis, which is related to cocitation analysis, is used to identify associations among indexing terms from the AMC (Association for Computing Machinery) Computing Classification System and to…

  7. A Comprehensive Review and Meta-Analysis of the Social Stories Literature

    ERIC Educational Resources Information Center

    Test, David W.; Richter, Sharon; Knight, Victoria; Spooner, Fred

    2011-01-01

    This comprehensive review of Social Story[TM} literature included (a) a descriptive review, (b) an analysis of research quality, and (c) a meta-analysis using percentage of nonoverlapping data. In the review, 28 studies were included; 18 were included in the meta-analysis. Descriptive results highlighted information on participants, dependent…

  8. Demographic Faultlines: A Meta-Analysis of the Literature

    ERIC Educational Resources Information Center

    Thatcher, Sherry M. B.; Patel, Pankaj C.

    2011-01-01

    We propose and test a theoretical model focusing on antecedents and consequences of demographic faultlines. We also posit contingencies that affect overall team dynamics in the context of demographic faultlines, such as the study setting and performance measurement. Using meta-analysis structural equation modeling with a final data set consisting…

  9. A Bibliometric Analysis of Marriage and Family Literature.

    ERIC Educational Resources Information Center

    Bayer, Alan E.

    1982-01-01

    Demonstrated that several quantifiable characteristics of articles in the marriage and family area are substantially related to subsequent impact in the field, based on bibliometric citation analysis. Works published by the more eminent, highly cited scholars are more likely to be cited. Implications of these results are discussed. (Author)

  10. Apparent behaviour of charged and neutral materials with ellipsoidal fibre distributions and cross-validation of finite element implementations.

    PubMed

    Nagel, Thomas; Kelly, Daniel J

    2012-05-01

    Continuous fibre distribution models can be applied to a variety of biological tissues with both charged and neutral extracellular matrices. In particular, ellipsoidal models have been used to describe the complex material behaviour of tissues such as articular cartilage and their engineered tissue equivalents. The choice of material parameters is more difficult than in classical anisotropic models and the impact that changes to these parameters can have on the predictions of such models are poorly understood. The objective of this study is to demonstrate the apparent behaviour of this class of materials over a range of material parameters. We further introduce a scaling approach to overcome certain counter-intuitive aspects related to the choice of anisotropy parameters and outline the integration method used in our implementations. User material codes for the commercial FE software packages Abaqus and MSC Marc are provided for use by other investigators. Cross-validation of our code against similar implementations in FEBio is also presented. PMID:22498290

  11. Topology analysis of social networks extracted from literature.

    PubMed

    Waumans, Michaël C; Nicodème, Thibaut; Bersini, Hugues

    2015-01-01

    In a world where complex networks are an increasingly important part of science, it is interesting to question how the new reading of social realities they provide applies to our cultural background and in particular, popular culture. Are authors of successful novels able to reproduce social networks faithful to the ones found in reality? Is there any common trend connecting an author's oeuvre, or a genre of fiction? Such an analysis could provide new insight on how we, as a culture, perceive human interactions and consume media. The purpose of the work presented in this paper is to define the signature of a novel's story based on the topological analysis of its social network of characters. For this purpose, an automated tool was built that analyses the dialogs in novels, identifies characters and computes their relationships in a time-dependent manner in order to assess the network's evolution over the course of the story. PMID:26039072

  12. Topology Analysis of Social Networks Extracted from Literature

    PubMed Central

    2015-01-01

    In a world where complex networks are an increasingly important part of science, it is interesting to question how the new reading of social realities they provide applies to our cultural background and in particular, popular culture. Are authors of successful novels able to reproduce social networks faithful to the ones found in reality? Is there any common trend connecting an author’s oeuvre, or a genre of fiction? Such an analysis could provide new insight on how we, as a culture, perceive human interactions and consume media. The purpose of the work presented in this paper is to define the signature of a novel’s story based on the topological analysis of its social network of characters. For this purpose, an automated tool was built that analyses the dialogs in novels, identifies characters and computes their relationships in a time-dependent manner in order to assess the network’s evolution over the course of the story. PMID:26039072

  13. "Hits" (Not "Discussion Posts") Predict Student Success in Online Courses: A Double Cross-Validation Study

    ERIC Educational Resources Information Center

    Ramos, Cheryl; Yudko, Errol

    2008-01-01

    The efficacy of individual components of an online course on positive course outcome was examined via stepwise multiple regression analysis. Outcome was measured as the student's total score on all exams given during the course. The predictors were page hits, discussion posts, and discussion reads. The vast majority of the variance of outcome was…

  14. Cross-Validation of the Norwegian Teacher's Self-Efficacy Scale (NTSES)

    ERIC Educational Resources Information Center

    Avanzi, Lorenzo; Miglioretti, Massimo; Velasco, Veronica; Balducci, Cristian; Vecchio, Luca; Fraccaroli, Franco; Skaalvik, Einar M.

    2013-01-01

    The study assesses the psychometric properties of the Italian version of the Norwegian Teacher Self-Efficacy Scale--NTSES. Multiple group confirmatory factor analysis was used to explore the measurement invariance of the scale across two countries. Analyses performed on Italian and Norwegian samples confirmed a six-factor structure of the scale…

  15. Repeated holdout Cross-Validation of Model to Estimate Risk of Lyme Disease by Landscape Attributes

    EPA Science Inventory

    We previously modeled Lyme disease (LD) risk at the landscape scale; here we evaluate the model's overall goodness-of-fit using holdout validation. Landscapes were characterized within road-bounded analysis units (AU). Observed LD cases (obsLD) were ascertained per AU. Data were ...

  16. Summary measures for clinical gait analysis: a literature review.

    PubMed

    Cimolin, Veronica; Galli, Manuela

    2014-04-01

    Instrumented 3D-gait analysis (3D-GA) is an important method used to obtain information that is crucial for establishing the level of functional limitation due to pathology, observing its evolution over time and evaluating rehabilitative intervention effects. However, a typical 3D-GA evaluation produces a vast amount of data, and despite its objectivity, its use is complicated, and the data interpretation is difficult. It is even more difficult to obtain an overview on patient cohorts for a comparison. Moreover, there is a growing awareness of the need for a concise index, specifically, a single measure of the 'quality' of a particular gait pattern. Several gait summary measures, which have been used in conjunction with 3D-GA, have been proposed to objectify clinical impression, quantify the degree of gait deviation from normal, stratify the severity of pathology, document the changes in gait patterns over time and evaluate interventions. PMID:24613461

  17. Bilateral choroidal melanoma--case analysis and literature review.

    PubMed

    Kowal, Joanna; Strzałka, Anna; Markiewicz, Anna; Romanowska-Dixon, Bożena; Bogdali, Anna

    2015-01-01

    Uveal melanoma is the most common primary intraocular neoplasm in adults. Its bilateral localization is extremely rare. The aim of the paper is analysis of the cases of bilateral uveal melanoma. Five bilateral uveal melanoma patients were diagnosed in the Department of Ophtalmology and Ocular Oncology beetwen 1980 and 2014. Both eyes of four patients were threated with brachytherapy. Final enulcleation of the one eye was performed in three patients. It was the primary treatment in one patient. The presence of uveal melanoma was confirmed by pathological examination in all cases after surgical removal of eyeball and in one after local resection of iris tumor. Metastatic lesions were diagnosed in lungs and liver in two patients. Three patients are still followed-up at our institution. The possibility of bilateral uveal melanoma should considered although it is extremely rare. bilateral uveal melanoma, brachytherapy, enucleation. PMID:26638545

  18. Evidence cross-validation and Bayesian inference of MAST plasma equilibria

    NASA Astrophysics Data System (ADS)

    von Nessi, G. T.; Hole, M. J.; Svensson, J.; Appel, L.

    2012-01-01

    In this paper, current profiles for plasma discharges on the mega-ampere spherical tokamak are directly calculated from pickup coil, flux loop, and motional-Stark effect observations via methods based in the statistical theory of Bayesian analysis. By representing toroidal plasma current as a series of axisymmetric current beams with rectangular cross-section and inferring the current for each one of these beams, flux-surface geometry and q-profiles are subsequently calculated by elementary application of Biot-Savart's law. The use of this plasma model in the context of Bayesian analysis was pioneered by Svensson and Werner on the joint-European tokamak [Svensson and Werner,Plasma Phys. Controlled Fusion 50(8), 085002 (2008)]. In this framework, linear forward models are used to generate diagnostic predictions, and the probability distribution for the currents in the collection of plasma beams was subsequently calculated directly via application of Bayes' formula. In this work, we introduce a new diagnostic technique to identify and remove outlier observations associated with diagnostics falling out of calibration or suffering from an unidentified malfunction. These modifications enable a good agreement between Bayesian inference of the last-closed flux-surface with other corroborating data, such as that from force balance considerations using EFIT++ [Appel et al., "A unified approach to equilibrium reconstruction" Proceedings of the 33rd EPS Conference on Plasma Physics (Rome, Italy, 2006)]. In addition, this analysis also yields errors on the plasma current profile and flux-surface geometry as well as directly predicting the Shafranov shift of the plasma core.

  19. Clinicopathological analysis of salivary gland carcinomas and literature review

    PubMed Central

    SHIGEISHI, HIDEO; OHTA, KOUJI; OKUI, GAKU; SEINO, SAYAKA; HASHIKATA, MIHO; YAMAMOTO, KAZUHIRO; ISHIDA, YOKO; SASAKI, KAZUKI; NARUSE, TAKAKO; RAHMAN, MOHAMMAD ZESHAAN; UETSUKI, RYO; NIMIYA, AKIKO; ONO, SHIGEHIRO; SHIMASUE, HIROSHI; HIGASHIKAWA, KOICHIRO; SUGIYAMA, MASARU; TAKECHI, MASAAKI

    2015-01-01

    Malignant salivary gland tumors are rare and exhibit a broad spectrum of phenotypic heterogeneity. The objective of this study was to investigate prognostic factors in patients with salivary gland carcinomas and review the results in light of other reports. We retrospectively reviewed 40 patients with primary salivary gland carcinomas who were diagnosed and treated at our institution between 1991 and 2014. Of the 40 tumors, 19 (47.5%) were mucoepidermoid carcinomas, 11 (27.5%) were adenoid cystic carcinomas, 7 (17.5%) were acinic cell carcinomas, 2 (5.0%) were myoepithelial carcinomas and 1 (2.5%) was a squamous cell carcinoma. Clinically positive lymph nodes were present in 4 patients (10.0%). As regards clinical stage, 15 cases (37.5%) were stage I, 13 (32.5%) were stage II, 1 (2.5%) was stage III and 11 (27.5%) were stage IVA. The majority of the patients (97.5%) were treated with surgery, of whom 25 (62.5%) received surgery alone and 14 (35.0%) underwent surgery in combination with chemotherapy or chemotherapy and radiotherapy. The median follow-up time for all the patients was 48 months. The disease-specific survival rate at 5 years was 87.1%. We identified a significant correlation between poor survival rate and histological grade (intermediate/high), tumor size (T3/T4), lymph node metastasis (node-positive) and clinical stage (III/IV) using the Kaplan-Meier method (P<0.05 for each). In addition, the Cox proportional hazards regression analysis confirmed that lymph node metastasis and tumor size were independent prognostic factors for disease-specific survival (hazard ratio = 18.7 and 15.1, respectively; P=0.023 and 0.037, respectively). Furthermore, tumor size was found to be a predictive factor regarding recurrence in the multivariate logistic regression analysis (odds ratio = 8.35; P=0.025). Our results suggest that lymph node metastasis and tumor size are significant prognostic factors for patients with salivary gland carcinomas. PMID:25469295

  20. [Chinese medicine adverse reactions' literature statistical analysis in recent five years].

    PubMed

    Xiang, Fei; Zhang, Xiaogang

    2011-10-01

    Since the state food and drug administration (SFDA) issued the first edition of adverse drug reaction(ADR) information in November, 2001, it has 32 edition, reported the drug 66 species of adverse reactions, involving the variety of 12 traditional Chinese medicines, it was effectively reminds all social concern of adverse drug reaction. For statistical analysis in recent years reported adverse drug reaction of prepared Chinese medicine, collected 462 literatures from 2005-09 CNKI Chinese journal full-text database of medicine health directory. In all the collections, about 94 literatures are closely related to adverse drug reaction report of prepared Chinese medicine. But there are only 7 references could identify traditional Chinese medicine and western medicine correctly in 72 literatures with the value of statistical analysis. That means only 8.9% of literatures can correctly identify western medicine and Chinese traditional medicine. So it proved that TCM workers' knowledge of ADR remains to be greatly improved. PMID:22242443

  1. Demographic faultlines: a meta-analysis of the literature.

    PubMed

    Thatcher, Sherry M B; Patel, Pankaj C

    2011-11-01

    We propose and test a theoretical model focusing on antecedents and consequences of demographic faultlines. We also posit contingencies that affect overall team dynamics in the context of demographic faultlines, such as the study setting and performance measurement. Using meta-analysis structural equation modeling with a final data set consisting of 311 data points (i.e., k [predictor-criterion relationships]), from 39 studies that were obtained from 36 papers with a total sample size of 24,388 individuals in 4,366 teams, we found that sex and racial diversity increased demographic faultline strength more than did diversity on the attributes of functional background, educational background, age, and tenure. Demographic faultline strength was found to increase task and relationship conflict as well as decrease team cohesion. Furthermore, although demographic faultline strength decreased both team satisfaction and team performance, there was a stronger decrease in team performance than in team satisfaction. The strength of these relationships increased when the study was conducted in the lab rather than in the field. We describe the theoretical and practical implications of these findings for advancing the study of faultlines. PMID:21688882

  2. The Severe Sexual Sadism Scale: cross-validation and scale properties.

    PubMed

    Mokros, Andreas; Schilling, Frank; Eher, Reinhard; Nitschke, Joachim

    2012-09-01

    The Severe Sexual Sadism Scale (SSSS) is a screening device for the file-based assessment of forensically relevant sexual sadism. The SSSS consists of 11 dichotomous (yes/no) items that code behavioral indicators of severe sexual sadism within sexual offenses. Based on an Austrian sample of 105 sexual offenders, the present study replicated the 1-dimensional scale structure of the SSSS, as evidenced by confirmatory factor analysis. More specifically, the scale was commensurate with the 1-parameter logistic test model (Rasch model). Reliability was estimated to be good. Criterion validity for the clinical diagnosis of sexual sadism was good. With a cutoff value of 7 points, sensitivity and specificity were estimated at 56% and 90%, respectively. PMID:22142424

  3. Cross-validation of marker configurations to measure pelvic kinematics in gait.

    PubMed

    Vogt, Lutz; Portscher, Martin; Brettmann, Kirsten; Pfeifer, Klaus; Banzer, Winfried

    2003-12-01

    External tracking of three-dimensional lumbar spine and pelvic oscillations is a method recently used in clinical gait analysis. This investigation validated the use of plate mounted marker configurations overlying the median sacral crest (S1) against single marker sets placed over the anterior and posterior superior iliac spine for the assessment of angular kinematic profiles of the pelvis during treadmill ambulation. Rotational pelvic movements of 12 asymptomatic male subjects were recorded by a 3D-ultrasonic measurement device using four single markers placed over the anterior and posterior superior iliac spine. Additionally, three external ultrasound markers were mounted on a rigid plate placed over S1. No significant differences (P > 0.05) for movement variability or range of motion between marker configurations could be obtained. It could be concluded that trucking of plate-mounted markers overlying S1 seems to be adequate for monitoring rotational pelvic motions in normal gait. PMID:14667951

  4. Cerebral gliosarcoma: Analysis of 16 patients and review of literature

    PubMed Central

    Singh, Gajendra; Das, Kuntal K.; Sharma, Pradeep; Guruprasad, B.; Jaiswal, Sushila; Mehrotra, Anant; Srivastava, Arun K.; Sahu, Rabi N.; Jaiswal, Awadhesh K.; Behari, Sanjay

    2015-01-01

    Background: Gliosarcoma (GS), a subtype of glioblastoma (GBM), is a rare primary neoplasm of the central nervous system. Certain features like temporal lobe affinity, tendency for extraneural metastasis and poorer outcome compared to GBM indicate that GS may indeed be a separate clinicopathologic entity. This led us to revisit this entity in our settings. Materials and Methods: Between 2009 and 2014, 16 cases of histologically proven GSs (14 primary, two secondary) were treated. Patient data were retrieved retrospectively. Statistical analysis was performed with? Statistical Package for Social Sciences, version 17.0. (Chicago, Illinois, USA). Survival was analyzed by Kaplan–Meier method. Results: GS predominantly affected males in their fifth decade of life. Raised intracranial pressure was the most common mode of clinical presentation. Temporal lobe was the most commonly affected part of the brain and majority of primary and all of secondary GBM were located peripherally. In 7 (43.8%) patients, tumor was radiologically well-demarcated and enhanced strongly and homogenously on contrast as compared to 9 (56.2%) patients where the tumor was ill-defined and showed heterogenous patchy or ring enhancement. Extent of excision was total in seven patients (43.8%), near total in 4 (25%) and subtotal in five patients (31.2%). Median survival was 6 months. Patients with well-demarcated, enhancing mass on imaging intraoperatively had firm tumors with a good plane of cleavage and had a better survival (8 months) compared to those in whom the tumor radiologically and intraoperatively mimicked GBM (2 months). Conclusion: GS is associated with poor survival (median survival 6 months). Radiological and intraoperative findings help categorize these tumors into GBM like GS and meningioma like GS. While the former histologically mimics GBM and has very poor survival (2 months), GS with meningioma like feature tends to have better survival (8 months). PMID:26396606

  5. Storylines about Rural Teachers in the United States: A Narrative Analysis of the Literature

    ERIC Educational Resources Information Center

    Burton, Megan; Brown, Kara; Johnson, Amy

    2013-01-01

    This narrative literature analysis examines the storylines of rural teachers told through published research on rural teachers. Using a narrative analysis approach, we investigated research published between 1970 and 2010--four decades of rural-oriented education research and policy work. Four storylines emerged from our coding of rural-related…

  6. Characteristics of Education Doctoral Dissertation References: An Inter-Institutional Analysis of Review of Literature Citations.

    ERIC Educational Resources Information Center

    Beile, Penny M.; Boote, David N.; Killingsworth, Elizabeth K.

    This study had two purposes: to examine the expertise of doctoral students in their use of the scholarly literature and to investigate the use of citation analysis as a tool for collection development. Analysis of 1,842 coded citations gleaned from 30 education dissertations awarded in 2000 from 3 institutions in the United States revealed that…

  7. Psychosocial factors and adjustment to chronic pain in spinal cord injury: replication and cross-validation.

    PubMed

    Molton, Ivan R; Stoelb, Brenda L; Jensen, Mark P; Ehde, Dawn M; Raichle, Katherine A; Cardenas, Diana D

    2009-01-01

    Recent studies have documented the importance of psychological factors in the experience of chronic pain in persons with spinal cord injury (SCI). The current study sought to replicate and extend previous work demonstrating associations among specific pain-related beliefs, coping, mental health, and pain outcomes in persons with SCI. A return-by-mail survey assessing psychological functioning and pain was completed by 130 individuals with SCI. Measures included short forms of the Survey of Pain Attitudes and the Chronic Pain Coping Inventory. After factor analysis, multiple regression was used to predict pain outcomes (psychological functioning and pain interference) after controlling for pain intensity. Results indicated that psychological factors, particularly beliefs about pain (including catastrophizing) and pain-related coping strategies (including passive coping), were significant predictors of pain outcomes and accounted for 21% to 25% of unique variance. Zero-order correlations suggested that the specific variables most closely associated with negative pain outcomes were perception of oneself as disabled, perceptions of low control over pain, and tendency to catastrophize. In general, negative attributions and coping were stronger predictors of pain adjustment than were positive ones. Results highlight the importance of psychological factors in understanding chronic pain in persons with SCI and provide further support for the biopsychosocial model. PMID:19533518

  8. Cross-validation of spaceborne radar and ground polarimetric radar observations

    NASA Astrophysics Data System (ADS)

    Bolen, Steven Matthew

    of a three-parameter gamma raindrop size distribution (RSD) model is also presented along with analysis of the initial PR RSD model on rain rate estimates. Data is taken from the TExas and FLorida UNderflights (TEFLUN-B) and the TRMM Large-scale Biosphere Atmosphere (LBA) field campaigns. Data from the Kwajalein KPOL radar is also used to validate the algorithms developed.

  9. Cross-Validation of the Recumbent Stepper Submaximal Exercise Test to Predict Peak Oxygen Uptake in Older Adults

    PubMed Central

    Herda, Ashley A.; Lentz, Angela A.; Mattlage, Anna E.; Sisante, Jason-Flor

    2014-01-01

    Background Submaximal exercise testing can have a greater application in clinical settings because peak exercise testing is generally not available. In previous work, a prediction equation was developed to estimate peak oxygen consumption (V̇o2) using a total body recumbent stepper (TBRS) and the Young Men's Christian Association (YMCA) protocol in adults who were healthy. Objective The purpose of the present study was to cross-validate the TBRS peak V̇o2 prediction equation in older adults. Design A cross-sectional study was conducted. Methods Thirty participants (22 female, 8 male; mean age=66.8 years, SD=5.52; mean weight=68.51 kg, SD=13.39) who previously completed a peak exercise test and met the inclusion criteria were invited to participate in the cross-validation study. Within 5 days of the peak V̇o2 test, participants completed the TBRS submaximal exercise test. The TBRS submaximal exercise test equation was used to estimate peak V̇o2. The variables in the equation included age, weight, sex, watts (at the end of the submaximal exercise test), and heart rate (at the end of the submaximal exercise test). Results A strong correlation was found between the predicted peak V̇o2 and the measured peak V̇o2. The difference between the values was 0.9 mL·kg−1·min−1, which was not statistically different. The standard error of the estimate was 4.2 mL·kg−1·min−1. Limitations The sample included individuals who volunteered to perform a peak exercise test, which may have biased the results toward those willing to exercise to fatigue. Conclusion The data suggest the TBRS submaximal exercise test and prediction equation can be used to predict peak V̇o2 in older adults. This finding is important for health care professionals wanting to provide information to their patients or clients regarding their fitness level. PMID:24435104

  10. An Efficient Leave-One-Out Cross-Validation-Based Extreme Learning Machine (ELOO-ELM) With Minimal User Intervention.

    PubMed

    Shao, Zhifei; Er, Meng Joo; Wang, Ning

    2016-08-01

    It is well known that the architecture of the extreme learning machine (ELM) significantly affects its performance and how to determine a suitable set of hidden neurons is recognized as a key issue to some extent. The leave-one-out cross-validation (LOO-CV) is usually used to select a model with good generalization performance among potential candidates. The primary reason for using the LOO-CV is that it is unbiased and reliable as long as similar distribution exists in the training and testing data. However, the LOO-CV has rarely been implemented in practice because of its notorious slow execution speed. In this paper, an efficient LOO-CV formula and an efficient LOO-CV-based ELM (ELOO-ELM) algorithm are proposed. The proposed ELOO-ELM algorithm can achieve fast learning speed similar to the original ELM without compromising the reliability feature of the LOO-CV. Furthermore, minimal user intervention is required for the ELOO-ELM, thus it can be easily adopted by nonexperts and implemented in automation processes. Experimentation studies on benchmark datasets demonstrate that the proposed ELOO-ELM algorithm can achieve good generalization with limited user intervention while retaining the efficiency feature. PMID:26259254

  11. Do different decision-analytic modeling approaches produce different results? A systematic review of cross-validation studies.

    PubMed

    Tsoi, Bernice; Goeree, Ron; Jegathisawaran, Jathishinie; Tarride, Jean-Eric; Blackhouse, Gord; O'Reilly, Daria

    2015-06-01

    When choosing a modeling approach for health economic evaluation, certain criteria are often considered (e.g., population resolution, interactivity, time advancement mechanism, resource constraints). However, whether these criteria and their associated modeling approach impacts results remain poorly understood. A systematic review was conducted to identify cross-validation studies (i.e., modeling a problem using different approaches with the same body of evidence) to offer insight on this topic. With respect to population resolution, reviewed studies suggested that both aggregate- and individual-level models will generate comparable results, although a practical trade-off exists between validity and feasibility. In terms of interactivity, infectious-disease models consistently showed that, depending on the assumptions regarding probability of disease exposure, dynamic and static models may produce dissimilar results with opposing policy recommendations. Empirical evidence on the remaining criteria is limited. Greater discussion will therefore be necessary to promote a deeper understanding of the benefits and limits to each modeling approach. PMID:25728942

  12. Simulating California reservoir operation using the classification and regression-tree algorithm combined with a shuffled cross-validation scheme

    NASA Astrophysics Data System (ADS)

    Yang, Tiantian; Gao, Xiaogang; Sorooshian, Soroosh; Li, Xin

    2016-03-01

    The controlled outflows from a reservoir or dam are highly dependent on the decisions made by the reservoir operators, instead of a natural hydrological process. Difference exists between the natural upstream inflows to reservoirs and the controlled outflows from reservoirs that supply the downstream users. With the decision maker's awareness of changing climate, reservoir management requires adaptable means to incorporate more information into decision making, such as water delivery requirement, environmental constraints, dry/wet conditions, etc. In this paper, a robust reservoir outflow simulation model is presented, which incorporates one of the well-developed data-mining models (Classification and Regression Tree) to predict the complicated human-controlled reservoir outflows and extract the reservoir operation patterns. A shuffled cross-validation approach is further implemented to improve CART's predictive performance. An application study of nine major reservoirs in California is carried out. Results produced by the enhanced CART, original CART, and random forest are compared with observation. The statistical measurements show that the enhanced CART and random forest overperform the CART control run in general, and the enhanced CART algorithm gives a better predictive performance over random forest in simulating the peak flows. The results also show that the proposed model is able to consistently and reasonably predict the expert release decisions. Experiments indicate that the release operation in the Oroville Lake is significantly dominated by SWP allocation amount and reservoirs with low elevation are more sensitive to inflow amount than others.

  13. Cross-validation of generalised body composition equations with diverse young men and women: the Training Intervention and Genetics of Exercise Response (TIGER) Study

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Generalised skinfold equations developed in the 1970s are commonly used to estimate laboratory-measured percentage fat (BF%). The equations were developed on predominately white individuals using Siri's two-component percentage fat equation (BF%-GEN). We cross-validated the Jackson-Pollock (JP) gene...

  14. Accuracy of Population Validity and Cross-Validity Estimation: An Empirical Comparison of Formula-Based, Traditional Empirical, and Equal Weights Procedures.

    ERIC Educational Resources Information Center

    Raju, Nambury S.; Bilgic, Reyhan; Edwards, Jack E.; Fleer, Paul F.

    1999-01-01

    Performed an empirical Monte Carlo study using predictor and criterion data from 84,808 U.S. Air Force enlistees. Compared formula-based, traditional empirical, and equal-weights procedures. Discusses issues for basic research on validation and cross-validation. (SLD)

  15. Cross-Validation of a Recently Published Equation Predicting Energy Expenditure to Run or Walk a Mile in Normal-Weight and Overweight Adults

    ERIC Educational Resources Information Center

    Morris, Cody E.; Owens, Scott G.; Waddell, Dwight E.; Bass, Martha A.; Bentley, John P.; Loftin, Mark

    2014-01-01

    An equation published by Loftin, Waddell, Robinson, and Owens (2010) was cross-validated using ten normal-weight walkers, ten overweight walkers, and ten distance runners. Energy expenditure was measured at preferred walking (normal-weight walker and overweight walkers) or running pace (distance runners) for 5 min and corrected to a mile. Energy…

  16. A Cross-Validation of easyCBM Mathematics Cut Scores in Washington State: 2009-2010 Test. Technical Report #1105

    ERIC Educational Resources Information Center

    Anderson, Daniel; Alonzo, Julie; Tindal, Gerald

    2011-01-01

    In this technical report, we document the results of a cross-validation study designed to identify optimal cut-scores for the use of the easyCBM[R] mathematics test in the state of Washington. A large sample, randomly split into two groups of roughly equal size, was used for this study. Students' performance classification on the Washington state…

  17. Cross-Validation of the Behavioral and Emotional Rating Scale-2 Youth Version: An Exploration of Strength-Based Latent Traits

    ERIC Educational Resources Information Center

    Furlong, Michael J.; Sharkey, Jill D.; Boman, Peter; Caldwell, Roslyn

    2007-01-01

    High-quality measurement is a necessary requirement to develop and evaluate the effectiveness of programs that use strength-based principles and strategies. Using independent cross-validation samples, we report two studies that explored the construct validity of the BERS-2 Youth Report, a popular measure designed to assess youth strengths, whose…

  18. A Test and Cross-Validation of the Revised Two-Factor Study Process Questionnaire Factor Structure among Western University Students

    ERIC Educational Resources Information Center

    Immekus, Jason C.; Imbrie, P. K.

    2010-01-01

    The Revised Two-Factor Study Process Questionnaire (R-SPQ-2F) is a measure of university students' approach to learning. Original evaluation of the scale's psychometric properties was based on a sample of Hong Kong university students' scores. The purpose of this study was to test and cross-validate the R-SPQ-2F factor structure, based on separate…

  19. Redefining Normal: A Critical Analysis of (Dis)ability in Young Adult Literature

    ERIC Educational Resources Information Center

    Curwood, Jen Scott

    2013-01-01

    This literary analysis examines constructions of normalcy and disability within contemporary young adult literature, including "Jerk," "California" (Friesen, 2008), "Marcelo in the Real World" (Stork, 2009), and "Five Flavors of Dumb" (John, 2010). As recent winners of the Schneider Family Book Award from the American Library Association, these…

  20. Species-level Analysis of Biological Literature for Storage and Retrieval

    ERIC Educational Resources Information Center

    Shervis, L. J.; And Others

    1972-01-01

    Describes an information retrieval system in entomology which could also be used for other biological literature. With the examples of coding information into the system, a user might get some idea of how to search and what kind of information might be found. No cost analysis for running the program is included. (PS)

  1. Comparative Critical Discourse Analysis of Student and Teacher Editions of Secondary Christian American Literature Textbooks

    ERIC Educational Resources Information Center

    Agiro, Christa Preston

    2012-01-01

    This article discusses the comparative application of critical discourse analysis to student and teacher editions of the two most widely used high school American literature textbooks by Christian publishers, examining them through the lens of critical theory. The study examined all parts of the student and teacher editions, excepting literary…

  2. Stepfamilies: A Content Analysis of the Popular Literature, 1961-1982.

    ERIC Educational Resources Information Center

    Lagoni, Laurel S.; Cook, Alicia Skinner

    1985-01-01

    A content analysis was performed on 30 stepparenting articles published during the years 1961-1982 in five major parenting magazines. No significant shifts in the number, content, and type of stepparenting articles appearing in the magazines were found. The popular literature dealing with stepparenting may be dependent on professional research for…

  3. The School to Work Transition of Indigenous Australians: A Review of the Literature and Statistical Analysis.

    ERIC Educational Resources Information Center

    Long, Mike; Frigo, Tracey; Batten, Margaret

    This report describes the current educational and employment situation of Australian Indigenous youth in terms of their pathways from school to work. A literature review and analysis of statistical data identify barriers to successful transition from school to work, including forms of teaching, curriculum, and assessment that pose greater…

  4. Critical Discourse Analysis in Literacy Education: A Review of the Literature

    ERIC Educational Resources Information Center

    Rogers, Rebecca; Schaenen, Inda

    2014-01-01

    This article is a critical, integrative literature review of scholarship in literacy studies from 2004 to 2012 that draws on critical discourse analysis (CDA). We discuss key issues, trends, and criticisms in the field. Our methodology was carried out in three stages. First, we searched educational databases to locate literacy-focused CDA…

  5. Content Analysis of Literature about LGB People of Color: 1998-2007

    ERIC Educational Resources Information Center

    Huang, Yu-Ping; Brewster, Melanie E.; Moradi, Bonnie; Goodman, Melinda B.; Wiseman, Marcie C.; Martin, Annelise

    2010-01-01

    This study provides a content analysis of the past decade (1998-2007) of psychological scholarship about lesbian, gay, and bisexual (LGB) people of color. Findings revealed that literature about LGB people of color is growing. But, findings also highlighted underused methods, underrepresented subpopulations, and understudied topics in the…

  6. Qualitative Research in Distance Education: An Analysis of Journal Literature 2005-2012

    ERIC Educational Resources Information Center

    Hauser, Laura

    2013-01-01

    This review study examines the current research literature in distance education for the years 2005 to 2012. The author found 382 research articles published during that time in four prominent peer-reviewed research journals. The articles were classified and coded as quantitative, qualitative, or mixed methods. Further analysis found another…

  7. Mapping Techno-Literary Spaces: Adapting Multiple Correspondence Analysis for Literature and Art

    ERIC Educational Resources Information Center

    Paling, Stephen

    2009-01-01

    Introduction: This paper constitutes part of a series of studies intended to establish "Literature and Art Informatics". The paper describes the conceptual background of multiple correspondence analysis and its use in visualizing conceptual spaces to describe the values that motivate the use of information technology by literary authors. An…

  8. How Does Distance Education Compare with Classroom Instruction? A Meta-Analysis of the Empirical Literature

    ERIC Educational Resources Information Center

    Bernard, Robert M.; Abrami, Philip C.; Lou, Yiping; Borokhovsk, Evgueni; Wade, Anne; Wozney, Lori; Wallet, Peter Andrew; Fiset, Manon; Huang, Binru

    2004-01-01

    A meta-analysis of the comparative distance education (DE) literature between 1985 and 2002 was conducted. In total, 232 studies containing 688 independent achievement, attitude, and retention outcomes were analyzed. Overall results indicated effect sizes of essentially zero on all three measures and wide variability. This suggests that many…

  9. Bridging Human Reliability Analysis and Psychology, Part 1: The Psychological Literature Review for the IDHEAS Method

    SciTech Connect

    April M. Whaley; Stacey M. L. Hendrickson; Ronald L. Boring; Jeffrey C. Joe; Katya L. Le Blanc; Jing Xing

    2012-06-01

    In response to Staff Requirements Memorandum (SRM) SRM-M061020, the U.S. Nuclear Regulatory Commission (NRC) is sponsoring work to update the technical basis underlying human reliability analysis (HRA) in an effort to improve the robustness of HRA. The ultimate goal of this work is to develop a hybrid of existing methods addressing limitations of current HRA models and in particular issues related to intra- and inter-method variabilities and results. This hybrid method is now known as the Integrated Decision-tree Human Event Analysis System (IDHEAS). Existing HRA methods have looked at elements of the psychological literature, but there has not previously been a systematic attempt to translate the complete span of cognition from perception to action into mechanisms that can inform HRA. Therefore, a first step of this effort was to perform a literature search of psychology, cognition, behavioral science, teamwork, and operating performance to incorporate current understanding of human performance in operating environments, thus affording an improved technical foundation for HRA. However, this literature review went one step further by mining the literature findings to establish causal relationships and explicit links between the different types of human failures, performance drivers and associated performance measures ultimately used for quantification. This is the first of two papers that detail the literature review (paper 1) and its product (paper 2). This paper describes the literature review and the high-level architecture used to organize the literature review, and the second paper (Whaley, Hendrickson, Boring, & Xing, these proceedings) describes the resultant cognitive framework.

  10. Citation analysis in journal rankings: medical informatics in the library and information science literature.

    PubMed Central

    Vishwanatham, R

    1998-01-01

    Medical informatics is an interdisciplinary field. Medical informatics articles will be found in the literature of various disciplines including library and information science publications. The purpose of this study was to provide an objectively ranked list of journals that publish medical informatics articles relevant to library and information science. Library Literature, Library and Information Science Abstracts, and Social Science Citation Index were used to identify articles published on the topic of medical informatics and to identify a ranked list of journals. This study also used citation analysis to identify the most frequently cited journals relevant to library and information science. PMID:9803294

  11. Analysis of poetic literature using B. F. Skinner's theoretical framework from verbal behavior

    PubMed Central

    Luke, Nicole M.

    2003-01-01

    This paper examines Skinner's work on verbal behavior in the context of literature as a particular class of written verbal behavior. It looks at contemporary literary theory and analysis and the contributions that Skinner's theoretical framework can make. Two diverse examples of poetic literature are chosen and analyzed following Skinner's framework, examining the dynamic interplay between the writer and reader that take place within the bounds of the work presented. It is concluded that Skinner's hypotheses about verbal behavior and the functional approach to understanding it have much to offer literary theorists in their efforts to understand literary works and should be more carefully examined.

  12. Visual Analysis and Dissemination of Scientific Literature Collections with SurVis.

    PubMed

    Beck, Fabian; Koch, Sebastian; Weiskopf, Daniel

    2016-01-01

    Bibliographic data such as collections of scientific articles and citation networks have been studied extensively in information visualization and visual analytics research. Powerful systems have been built to support various types of bibliographic analysis, but they require some training and cannot be used to disseminate the insights gained. In contrast, we focused on developing a more accessible visual analytics system, called SurVis, that is ready to disseminate a carefully surveyed literature collection. The authors of a survey may use our Web-based system to structure and analyze their literature database. Later, readers of the survey can obtain an overview, quickly retrieve specific publications, and reproduce or extend the original bibliographic analysis. Our system employs a set of selectors that enable users to filter and browse the literature collection as well as to control interactive visualizations. The versatile selector concept includes selectors for textual search, filtering by keywords and meta-information, selection and clustering of similar publications, and following citation links. Agreement to the selector is represented by word-sized sparkline visualizations seamlessly integrated into the user interface. Based on an analysis of the analytical reasoning process, we derived requirements for the system. We developed the system in a formative way involving other researchers writing literature surveys. A questionnaire study with 14 visual analytics experts confirms that SurVis meets the initially formulated requirements. PMID:26529698

  13. The Strategic Environment Assessment bibliographic network: A quantitative literature review analysis

    SciTech Connect

    Caschili, Simone; De Montis, Andrea; Ganciu, Amedeo; Ledda, Antonio; Barra, Mario

    2014-07-01

    Academic literature has been continuously growing at such a pace that it can be difficult to follow the progression of scientific achievements; hence, the need to dispose of quantitative knowledge support systems to analyze the literature of a subject. In this article we utilize network analysis tools to build a literature review of scientific documents published in the multidisciplinary field of Strategic Environment Assessment (SEA). The proposed approach helps researchers to build unbiased and comprehensive literature reviews. We collect information on 7662 SEA publications and build the SEA Bibliographic Network (SEABN) employing the basic idea that two publications are interconnected if one cites the other. We apply network analysis at macroscopic (network architecture), mesoscopic (sub graph) and microscopic levels (node) in order to i) verify what network structure characterizes the SEA literature, ii) identify the authors, disciplines and journals that are contributing to the international discussion on SEA, and iii) scrutinize the most cited and important publications in the field. Results show that the SEA is a multidisciplinary subject; the SEABN belongs to the class of real small world networks with a dominance of publications in Environmental studies over a total of 12 scientific sectors. Christopher Wood, Olivia Bina, Matthew Cashmore, and Andrew Jordan are found to be the leading authors while Environmental Impact Assessment Review is by far the scientific journal with the highest number of publications in SEA studies. - Highlights: • We utilize network analysis to analyze scientific documents in the SEA field. • We build the SEA Bibliographic Network (SEABN) of 7662 publications. • We apply network analysis at macroscopic, mesoscopic and microscopic network levels. • We identify SEABN architecture, relevant publications, authors, subjects and journals.

  14. The Secrets of Scheherazade: Toward a Functional Analysis of Imaginative Literature

    PubMed Central

    Grant, Lyle K

    2005-01-01

    A functional analysis of selected aspects of imaginative literature is presented. Reading imaginative literature is described as a process in which the reader makes indirect contact with the contingencies operating on the behavior of story characters. A functional story grammar is proposed in which the reader's experience with a story is interpreted in terms of escape contingencies in which the author initially introduces an establishing operation consisting of a source of tension, which is resolved in some way by the outcome of the story. Although escape contingencies represent the functional basis for the structure of stories, they are to be understood in a context of many other reinforcers for reading fiction. Other contingencies that maintain reading are discussed. Functional analyses of imaginative literature have much to offer, both in improving literary education and in understanding the behavioral processes that occur on the part of the reader. PMID:22477324

  15. Cross Validation and Generalization of a Content Analysis of the Narrative Sections of Navy Performance Evaluation for Senior Enlisted Personnel.

    ERIC Educational Resources Information Center

    Ramsey-Klee, Diane M.; Richman, Vivian

    In an earlier pilot study of the narrative sections of Navy performance evaluations for senior enlisted personnel in pay grade E-7, it was determined by content analytic techniques that it is possible to differentiate between the performance of typical and superlative chief petty officers based on the narrative content of Evaluation Reports. A…

  16. Mosaic small supernumerary marker chromosome 1 at amniocentesis: prenatal diagnosis, molecular genetic analysis and literature review.

    PubMed

    Chen, Chih-Ping; Chen, Ming; Su, Yi-Ning; Huang, Jian-Pei; Chern, Schu-Rern; Wu, Peih-Shan; Su, Jun-Wei; Chang, Shun-Ping; Chen, Yu-Ting; Lee, Chen-Chi; Chen, Li-Feng; Pan, Chen-Wen; Wang, Wayseen

    2013-10-15

    We present prenatal diagnosis and molecular cytogenetic analysis of mosaic small supernumerary marker chromosome 1 [sSMC(1)]. We review the literature of sSMC(1) at amniocentesis and chromosome 1p21.1-p12 duplication syndrome. We discuss the genotype-phenotype correlation of the involved genes of ALX3, RBM15, NTNG1, SLC25A24, GPSM2, TBX15 and NOTCH2 in this case. PMID:23933412

  17. Predicting Chinese Children and Youth's Energy Expenditure Using ActiGraph Accelerometers: A Calibration and Cross-Validation Study

    ERIC Educational Resources Information Center

    Zhu, Zheng; Chen, Peijie; Zhuang, Jie

    2013-01-01

    Purpose: The purpose of this study was to develop and cross-validate an equation based on ActiGraph accelerometer GT3X output to predict children and youth's energy expenditure (EE) of physical activity (PA). Method: Participants were 367 Chinese children and youth (179 boys and 188 girls, aged 9 to 17 years old) who wore 1 ActiGraph GT3X…

  18. Development and cross-validation of prognostic models to assess the treatment effect of cisplatin/pemetrexed chemotherapy in lung adenocarcinoma patients.

    PubMed

    Mou, Wenjun; Liu, Zhaoqi; Luo, Yuan; Zou, Meng; Ren, Chao; Zhang, Chunyan; Wen, Xinyu; Wang, Yong; Tian, Yaping

    2014-09-01

    Better understanding of the treatment effect of cisplatin/pemetrexed chemotherapy on lung adenocarcinoma patients is needed to facilitate chemotherapy planning and patient care. In this retrospective study, we will develop prognostic models by the cross-validation method using clinical and serum factors to predict outcomes of cisplatin/pemetrexed chemotherapy in lung adenocarcinoma patients. Lung adenocarcinoma patients admitted between 2008 and 2013 were enrolled. 29 serum parameters of laboratory tests and 14 clinical factors were analyzed to develop the prognostic models. First, the stepwise selection and five-fold cross-validation were performed to identify candidate prognostic factors. Then a classification of all patients based on the number of metastatic sites resulted in four distinct subsets. In each subset, a prognostic model was fitted with the most accurate prognostic factors from the candidate prognostic factors. Categorical survival prediction was estimated using a log-rank test and visualized with Kaplan-Meier method. 227 lung adenocarcinoma patients were enrolled. Twenty candidate prognostic factors evaluated using the five-fold cross-validation method were total protein, total bilirubin, direct bilirubin, creatine kinase, age, smoking index, neuron-specific enolase, bone metastasis, total triglyceride, albumin, gender, uric acid, CYFRA21-1, lymph node metastasis, liver metastasis, lactate dehydrogenase, CA153, peritoneal metastasis, CA125, and CA199. From these 20 candidate prognostic factors, the multivariate Cox proportional hazard model with the highest prognostic accuracy in each subset was identified by the stepwise forward selection method, which generated significant prognostic stratifications in Kaplan-Meier survival analyses (all log-rank p < 0.01). Generally, the prognostic models using five-fold cross-validation achieve a good prediction performance. The prognostic models can be administered safely to lung adenocarcinoma patients treated

  19. The Gender Analysis Tools Applied in Natural Disasters Management: A Systematic Literature Review

    PubMed Central

    Sohrabizadeh, Sanaz; Tourani, Sogand; Khankeh, Hamid Reza

    2014-01-01

    Background: Although natural disasters have caused considerable damages around the world, and gender analysis can improve community disaster preparedness or mitigation, there is little research about the gendered analytical tools and methods in communities exposed to natural disasters and hazards. These tools evaluate gender vulnerability and capacity in pre-disaster and post-disaster phases of the disaster management cycle. Objectives: Identifying the analytical gender tools and the strengths and limitations of them as well as determining gender analysis studies which had emphasized on the importance of using gender analysis in disasters. Methods: The literature search was conducted in June 2013 using PubMed, Web of Sciences, ProQuest Research Library, World Health Organization Library, Gender and Disaster Network (GDN) archive. All articles, guidelines, fact sheets and other materials that provided an analytical framework for a gender analysis approach in disasters were included and the non-English documents as well as gender studies of non-disasters area were excluded. Analysis of the included studies was done separately by descriptive and thematic analyses. Results: A total of 207 documents were retrieved, of which only nine references were included. Of these, 45% were in form of checklist, 33% case study report, and the remaining 22% were article. All selected papers were published within the period 1994-2012. Conclusions: A focus on women’s vulnerability in the related research and the lack of valid and reliable gender analysis tools were considerable issues identified by the literature review. Although non-English literatures with English abstract were included in the study, the possible exclusion of non-English ones was found as the limitation of this study. PMID:24678441

  20. Introducing Pre-university Students to Primary Scientific Literature Through Argumentation Analysis

    NASA Astrophysics Data System (ADS)

    Koeneman, Marcel; Goedhart, Martin; Ossevoort, Miriam

    2013-01-01

    Primary scientific literature is one of the most important means of communication in science, written for peers in the scientific community. Primary literature provides an authentic context for showing students how scientists support their claims. Several teaching strategies have been proposed using (adapted) scientific publications, some for secondary education, but none of these strategies focused specifically on scientific argumentation. The purpose of this study is to evaluate a strategy for teaching pre-university students to read unadapted primary scientific literature, translated into students' native language, based on a new argumentation analysis framework. This framework encompasses seven types of argumentative elements: motive, objective, main conclusion, implication, support, counterargument and refutation. During the intervention, students studied two research articles. We monitored students' reading comprehension and their opinion on the articles and activities. After the intervention, we measured students' ability to identify the argumentative elements in a third unadapted and translated research article. The presented framework enabled students to analyse the article by identifying the motive, objective, main conclusion and implication and part of the supports. Students stated that they found these activities useful. Most students understood the text on paragraph level and were able to read the article with some help for its vocabulary. We suggest that primary scientific literature has the potential to show students important aspects of the scientific process and to learn scientific vocabulary in an authentic context.

  1. Analysis of the Team-Based Learning Literature: TBL Comes of Age

    PubMed Central

    Haidet, Paul; Kubitz, Karla; McCormack, Wayne T.

    2015-01-01

    Team-based learning, or TBL, is an application-oriented teaching method that combines small- and large-group learning by incorporating multiple small groups into a large group setting. It has been increasingly used in postsecondary and professional education over the past two decades. Given this increasing usage, many faculty wonder about the effects TBL has on learning outcomes. The authors performed a review and synthesis on the educational literature with respect to TBL to examine the quality of their descriptions of core TBL elements, then constructed narrative summaries of these selected articles. Their analysis demonstrated early evidence of positive educational outcomes in terms of knowledge acquisition, participation and engagement, and team performance. The authors conclude that the TBL literature is at an important maturation point, where more rigorous testing and study of additional questions relating to the method are needed, as well as more accurate reporting of TBL implementation. PMID:26568668

  2. The development of the Medical Literature Analysis and Retrieval System (MEDLARS)*

    PubMed Central

    Dee, Cheryl Rae

    2007-01-01

    Objective: The research provides a chronology of the US National Library of Medicine's (NLM's) contribution to access to the world's biomedical literature through its computerization of biomedical indexes, particularly the Medical Literature Analysis and Retrieval System (MEDLARS). Method: Using material gathered from NLM's archives and from personal interviews with people associated with developing MEDLARS and its associated systems, the author discusses key events in the history of MEDLARS. Discussion: From the development of the early mechanized bibliographic retrieval systems of the 1940s and to the beginnings of online, interactive computerized bibliographic search systems of the early 1970s chronicled here, NLM's contributions to automation and bibliographic retrieval have been extensive. Conclusion: As NLM's technological experience and expertise grew, innovative bibliographic storage and retrieval systems emerged. NLM's accomplishments regarding MEDLARS were cutting edge, placing the library at the forefront of incorporating mechanization and technologies into medical information systems. PMID:17971889

  3. Clinical trials with herbal medicinal products in children: a literature analysis.

    PubMed

    Marquardt, Peter; Kaft, Karin; Nieber, Karen

    2015-06-01

    Herbal medicinal products have been used since several decades for the health care of children. Nevertheless, well-controlled clinical studies with herbal medicinal products for children are rare. The authors' objective therefore was to evaluate clinical trials with herbal medicinal products in children, based on a literature search in PubMed and Web of Science. A total of 133 trials were identified. 90 studies were randomized, 32.2% were randomized and double-blinded. Most studies were performed in China, in the age group 6-12 years, and in children with respiratory diseases, most often herbal medicinal products with Hedera helix were tested. The analysis revealed that studies on herbal medicinal products were feasible in children. Although clinical trials have been found, this literature search have limitations and did not cover all studies performed. However, only few clinical trials of high quality were identified. Further studies therefore are urgently needed to support the good empirical findings. PMID:26183729

  4. Quantification of rainfall prediction uncertainties using a cross-validation based technique. Methodology description and experimental validation.

    NASA Astrophysics Data System (ADS)

    Fraga, Ignacio; Cea, Luis; Puertas, Jerónimo; Salsón, Santiago; Petazzi, Alberto

    2016-04-01

    In this paper we present a new methodology to compute rainfall fields including the quantification of predictions uncertainties using raingauge network data. The proposed methodology comprises two steps. Firstly, the ordinary krigging technique is used to determine the estimated rainfall depth in every point of the study area. Then multiple equi-probable errors fields, which comprise both interpolation and measuring uncertainties, are added to the krigged field resulting in multiple rainfall predictions. To compute these error fields first the standard deviation of the krigging estimation is determined following the cross-validation based procedure described in Delrieu et al. (2014). Then, the standard deviation field is sampled using non-conditioned Gaussian random fields. The proposed methodology was applied to study 7 rain events in a 60x60 km area of the west coast of Galicia, in the Northwest of Spain. Due to its location at the junction between tropical and polar regions, the study area suffers from frequent intense rainfalls characterized by a great variability in terms of both space and time. Rainfall data from the tipping bucket raingauge network operated by MeteoGalicia were used to estimate the rainfall fields using the proposed methodology. The obtained predictions were then validated using rainfall data from 3 additional rain gauges installed within the CAPRI project (Probabilistic flood prediction with high resolution hydrologic models from radar rainfall estimates, funded by the Spanish Ministry of Economy and Competitiveness. Reference CGL2013-46245-R.). Results show that both the mean hyetographs and the peak intensities are correctly predicted. The computed hyetographs present a good fit to the experimental data and most of the measured values fall within the 95% confidence intervals. Also, most of the experimental values outside the confidence bounds correspond to time periods of low rainfall depths, where the inaccuracy of the measuring devices

  5. Demonstrations of Agency in Contemporary International Children's Literature: An Exploratory Critical Content Analysis across Personal, Social, and Cultural Dimensions

    ERIC Educational Resources Information Center

    Mathis, Janelle B.

    2015-01-01

    International children's literature has the potential to create global experiences and cultural insights for young people confronted with limited and biased images of the world offered by media. The current inquiry was designed to explore, through a critical content analysis approach, international children's literature in which characters…

  6. Women's Ways of Leading: A Qualitative Content Analysis to Determine Leadership Messages Contained in Literature of National Panhellenic Conference Groups

    ERIC Educational Resources Information Center

    Fechner, Andrea M.

    2000-01-01

    This study documented the leadership messages sent to women in 16 of the National Panhellenic Conference groups' official literature. The purpose of the study was to provide detailed descriptive analysis using excerpts from the official literature to show both traditional and non-traditional (women's ways of leading) theoretical themes as well as…

  7. Bibliometric analysis of scientific literature on intestinal parasites in Argentina during the period 1985-2014.

    PubMed

    Basualdo, Juan A; Grenóvero, María S; Bertucci, Evangelina; Molina, Nora B

    2016-01-01

    The study of scientific production is a good indicator of the progress in research and knowledge generation. Bibliometrics is a scientific discipline that uses a set of indicators to quantitatively express the bibliographic characteristics of scientific publications. The scientific literature on the epidemiology of intestinal parasites in Argentina is scattered in numerous sources, hindering access and visibility to the scientific community. Our purpose was to perform a quantitative, bibliometric study of the scientific literature on intestinal parasites in humans in Argentina published in the period 1985-2014. This bibliometric analysis showed an increase in the number of articles on intestinal parasites in humans in Argentina published over the past 30 years. Those articles showed a collaboration index similar to that of the literature, with a high index of institutionality for national institutions and a very low one for international collaboration. The original articles were published in scientific journals in the American Continent, Europe and Asia. The use of bibliometric indicators can provide a solid tool for the diagnosis and survey of the research on epidemiology of intestinal parasites and contributes to the dissemination and visibility of information on the scientific production developed in Argentina. PMID:27282076

  8. Forensic psychiatric nursing: a literature review and thematic analysis of staff-patient interaction.

    PubMed

    Gildberg, F A; Elverdam, B; Hounsgaard, L

    2010-05-01

    In Denmark the increasing number of forensic mental health patients has led to prioritized services, including the area of nursing; however, this field is subject to sparse research. The aim of this study was to review existing research literature and in doing so investigate what characterizes forensic mental health staff interaction with forensic mental health inpatients and furthermore to investigate what significance these staff characteristics have for the inpatients. The literature review spans the period September 1997 to January 2009 and was based on a systematic keyword combination search in the following databases: CINAHL, CSB, PsycINFO, Scopus, Pubmed, MEDLINE and Sociological Abstracts. The articles were categorized using a literature matrix and analysed using content analysis. Seventeen quantitative and qualitative research studies were analysed. The results show that the interaction between forensic staff and forensic inpatients is characterized by two overriding themes: parentalistic & behaviour-changing care and relational & personal quality-dependent care. Only a few of the findings represent a clear account of how the interactional characteristics impact on the forensic inpatient. The conclusion is that no clear account of the patient impact issue can be reached at this point and that further investigation needs to take place. PMID:20529188

  9. Literature review and meta-analysis of translaminar pressure difference in open-angle glaucoma

    PubMed Central

    Siaudvytyte, L; Januleviciene, I; Daveckaite, A; Ragauskas, A; Bartusis, L; Kucinoviene, J; Siesky, B; Harris, A

    2015-01-01

    There is increasing evidence in the literature regarding translaminar pressure difference's (TPD) role in the pathophysiology of glaucoma. The optic nerve is exposed not only to intraocular pressure in the eye, but also to intracranial pressure (ICP), as it is surrounded by cerebrospinal fluid in the subarachnoid space. Although pilot studies have identified the potential importance of TPD in glaucoma, limited available data currently prevent a comprehensive description of the role that TPD may have in glaucomatous pathophysiology. In this review, we present all available qualified data from a systematic review of the literature of the role of TPD in open-angle glaucoma (OAG). PubMed (Medline), OVID Medline, ScienceDirect, SpringerLink, and all available library databases were reviewed and subsequent meta-analysis of pooled mean differences are presented where appropriate. Five papers including 396 patients met criteria for inclusion to the analysis. Importantly, we included all observational studies despite differences in ICP measurement methods, as there is no consensus regarding best-practice ICP measurements in glaucoma. Our results show that not only TPD is higher in glaucoma patients compared with healthy subjects, it is related to structural glaucomatous changes of the optic disc. Our analysis suggests further longitudinal prospective studies are needed to investigate the influence of TPD in OAG, with a goal of overcoming methodological weaknesses of previous studies. PMID:26183286

  10. Bibliometric Analysis of Orthopedic Literature on Total Knee Arthroplasty in Asian Countries: A 10-year Analysis

    PubMed Central

    Eom, Sang Hwa; Bamne, Ankur B.; Chowdhry, Madhav; Chae, Ihn Seok

    2015-01-01

    Purpose We aimed to determine the quantity and quality of research output of selected Asian countries in the field of total knee arthroplasty (TKA) in the last 10 years. Materials and Methods Top 15 Asian countries were selected according to their gross domestic product. The Science Citation Index Expanded database was used to search for the literature published between 2004 and 2013 using "Total Knee Arthroplasty". The numbers of articles, journals and citations and the contribution of each country were analyzed. The articles were classified according to the type of study and the relative proportion of each type was analyzed. Results Asian surgeons have increasingly contributed to orthopedic literature on TKA for the past 10 years, but the dominant contribution came from only a few countries. The total number of articles published by Asian countries increased by 261%, with Japan producing most of the studies and China showing the maximum growth rate. The majority of studies were published in low impact factor journals. Korea published the highest proportion of articles in high impact factor journals. Clinical papers were most frequent. Conclusions Our identification of research productivity pertaining to TKA among Asian countries gives a unique insight into the level of academic research in the field of TKA in these countries. There is a need to improve the quality of research to enhance the publishing power in high impact journals as well as the need for more basic research and epidemiological studies considering the unique differences among Asian patients undergoing TKA. PMID:26389067

  11. Review of literature on herbicides, including phenoxy herbicides and associated dioxins. Volume 13: Analysis of recent literature on health effects and Volume 14: Annotated bibliography of recent literature on health effects

    SciTech Connect

    Not Available

    1989-06-15

    The report consists of a bibliography and critical review of scientific literature that became available during 1988 on the health effects of the herbicides (including impurities) used as defoliants in the Vietnam conflict. An attempt has been made to identify all scientific literature (including unpublished reports) relevant to the potential human health effects of the herbicidal preparation commonly referred to as Agent Orange, the herbicidal active ingredients 2,4-dichlorophenoxyacetic acid (2,4-D) and 2,4,5-trichloroacetic acid and their esters, as well as polychlorinated dibenzo-p-dioxin, henceforth referred to as TCDD, known to be contaminating impurities of some phenoxy herbicide preparations, an the herbicides, picloram and cacodylic acid. The scope of the review does not include literature dealing exclusively with the chemistry, analysis, or environmental fate and effects of these compounds.

  12. Denial of impending death: a discourse analysis of the palliative care literature.

    PubMed

    Zimmermann, Camilla

    2004-10-01

    Terminally ill patients and their families are often referred to as being "in denial" of impending death. This study uses the qualitative method of discourse analysis to investigate the usage of the term "denial" in the contemporary hospice and palliative care literature. A Medline search (1970-2001) was performed combining the text words "deny" and "denial" with the subject headings "terminal care", "palliative care" and "hospice care," and restricted to English articles discussing death denial in adults. The 30 articles were analysed using a constant comparison technique and emerging themes regarding the meaning and usage of the words "deny" and "denial" identified. This paper focusses on the theme of denial as an individual psychological process. Three dominant subthemes were distinguished: denial as an unconscious "defence mechanism", denial as "healthy" and denial as temporary. The analysis focusses on the intertextuality of these themes with each other and with previous texts on the denial of death. Elements of the psychoanalytic definition of denial as an unconscious defence mechanism are retained in the literature but are interwoven with new themes on patient choice. The result is an overall discourse that is conflictual and at times self-contradictory but overall consistent with the biomedical model of illness. I suggest that the representation of death denial elaborated in these articles may be related to a larger discourse on dying in contemporary Western society, which both invites patients to participate in the planning of their death and labels those who do not comply. PMID:15279932

  13. The use of Skype in analysis and training: a research and literature review.

    PubMed

    Merchant, John

    2016-06-01

    Of recent years there has not only been an increasing use of Skype in analytic treatment, supervision and teaching, but also a number of writers have been endeavouring to assess its effectiveness. Whilst it is generally agreed that Skype can facilitate an analytic encounter where distance prohibits a face-to-face process, where continuity needs to be maintained and where analysands are in areas far from specialized centres, there is divergence in the literature as to whether analysis, as opposed to psychotherapy, can be successful using Skype. This paper reviews the literature and concludes that the essentials of a genuine analytic process are not necessarily precluded by Skype. One central reason is because there exists a cross-modal communication channel between the human senses (underpinned by audiovisual mirror neurons) in addition to the recently discovered instinct for communication and interpersonal understanding, and these can override the need for physical proximity of the participants. The essentials of an analytic frame can thus be maintained, and the continuity that Skype enables means that containment is also facilitated and this counters the negative aspects of shuttle analysis. The critical issues for the profession then become the professional development for practitioners in the use of Skype and suggestions are listed. PMID:27192366

  14. Isokinetic and anterior cruciate ligament reconstruction with hamstrings or patella tendon graft: analysis of literature.

    PubMed

    Dauty, M; Tortellier, L; Rochcongar, P

    2005-09-01

    We report isokinetic results of anterior cruciate ligament reconstruction with patellar tendon or hamstring graft from the literature analysis. The literature was defined from two search "textwords": Isokinetic and Anterior cruciate ligament reconstruction, and from three databases: Medline, Pascal, and Herasmus. Two independent physicians (Physical Medicine and Rehabilitation) carried out an analysis according to the French National Accreditation and Health Evaluation Agency recommendations. Fifty-three studies were selected: 29 reported isokinetic results after anterior cruciate ligament reconstruction with patellar tendon graft, 15 reported isokinetic results after anterior cruciate ligament reconstruction with hamstring graft, and 9 studies compared the two surgical procedures. After discussing different bias and in reference to prospective randomised and comparative studies, the anterior cruciate ligament reconstruction with patellar tendon graft involves a knee extensors deficit during several months. The hamstring surgical procedure involves a less important knee extensor deficit (from 6 to 19 % against 8 to 21 %). Knee sprain and intra-articular surgery involve a long-lasting knee extensors deficit. Anterior cruciate ligament reconstruction with hamstrings graft involves a knee flexors deficit over several months. The patellar tendon surgical procedure involves a less important knee flexors deficit (from 1 to 15 % against 5 to 17 %). In reference to isokinetic parameters, no difference between the two surgical procedures (patellar tendon graft or hamstring graft) is shown after more than twenty-four post-surgical months. PMID:16195995

  15. Listener estimations of talker age: A meta-analysis of the literature.

    PubMed

    Hunter, Eric J; Ferguson, Sarah Hargus; Newman, Catherine Anne

    2016-10-01

    Numerous studies, most of them cross-sectional studies using one sample per talker, have demonstrated that listeners make relatively accurate age judgments from hearing talkers' voices. The current study analyzed the results of several such direct age estimation studies to characterize better the perception of talker age over a larger number of individuals. A review of the direct age estimation literature was performed. Data sets from seven papers were reconstituted, and an analysis of the combined data (meta-analysis) including 530 data points was conducted. The reconstituted and combined data included talkers aged 10-90. Listeners appeared to overestimate age when talkers were younger and to underestimate it when talkers were older. PMID:26079468

  16. Nurse-sensitive health care outcomes in acute care settings: an integrative analysis of the literature.

    PubMed

    Pierce, S F

    1997-04-01

    With the advent of profit maximization in health care came an increased focus on defining quality through outcomes achieved. The article describes an analysis of the nursing literature from 1974 to 1996 using Donabedian's structure-process-outcome framework and the specific indicators identified by the American Nurses Association report card, the Institute of Medicine, and the nursing-sensitive outcomes classification. Although evidence exists documenting nursing's positive impact on patient outcomes, this analysis suggests a real need to integrate our clinical and administrative studies and to employ a more comprehensive, longitudinal, multifacility approach if we are to answer the scientific question regarding which nursing structures and processes truly produce the best health outcomes. PMID:9097521

  17. Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network

    PubMed Central

    2011-01-01

    Background Vaccine literature indexing is poorly performed in PubMed due to limited hierarchy of Medical Subject Headings (MeSH) annotation in the vaccine field. Vaccine Ontology (VO) is a community-based biomedical ontology that represents various vaccines and their relations. SciMiner is an in-house literature mining system that supports literature indexing and gene name tagging. We hypothesize that application of VO in SciMiner will aid vaccine literature indexing and mining of vaccine-gene interaction networks. As a test case, we have examined vaccines for Brucella, the causative agent of brucellosis in humans and animals. Results The VO-based SciMiner (VO-SciMiner) was developed to incorporate a total of 67 Brucella vaccine terms. A set of rules for term expansion of VO terms were learned from training data, consisting of 90 biomedical articles related to Brucella vaccine terms. VO-SciMiner demonstrated high recall (91%) and precision (99%) from testing a separate set of 100 manually selected biomedical articles. VO-SciMiner indexing exhibited superior performance in retrieving Brucella vaccine-related papers over that obtained with MeSH-based PubMed literature search. For example, a VO-SciMiner search of "live attenuated Brucella vaccine" returned 922 hits as of April 20, 2011, while a PubMed search of the same query resulted in only 74 hits. Using the abstracts of 14,947 Brucella-related papers, VO-SciMiner identified 140 Brucella genes associated with Brucella vaccines. These genes included known protective antigens, virulence factors, and genes closely related to Brucella vaccines. These VO-interacting Brucella genes were significantly over-represented in biological functional categories, including metabolite transport and metabolism, replication and repair, cell wall biogenesis, intracellular trafficking and secretion, posttranslational modification, and chaperones. Furthermore, a comprehensive interaction network of Brucella vaccines and genes were

  18. New directions in evidence-based policy research: a critical analysis of the literature

    PubMed Central

    2014-01-01

    Despite 40 years of research into evidence-based policy (EBP) and a continued drive from both policymakers and researchers to increase research uptake in policy, barriers to the use of evidence are persistently identified in the literature. However, it is not clear what explains this persistence – whether they represent real factors, or if they are artefacts of approaches used to study EBP. Based on an updated review, this paper analyses this literature to explain persistent barriers and facilitators. We critically describe the literature in terms of its theoretical underpinnings, definitions of ‘evidence’, methods, and underlying assumptions of research in the field, and aim to illuminate the EBP discourse by comparison with approaches from other fields. Much of the research in this area is theoretically naive, focusing primarily on the uptake of research evidence as opposed to evidence defined more broadly, and privileging academics’ research priorities over those of policymakers. Little empirical data analysing the processes or impact of evidence use in policy is available to inform researchers or decision-makers. EBP research often assumes that policymakers do not use evidence and that more evidence – meaning research evidence – use would benefit policymakers and populations. We argue that these assumptions are unsupported, biasing much of EBP research. The agenda of ‘getting evidence into policy’ has side-lined the empirical description and analysis of how research and policy actually interact in vivo. Rather than asking how research evidence can be made more influential, academics should aim to understand what influences and constitutes policy, and produce more critically and theoretically informed studies of decision-making. We question the main assumptions made by EBP researchers, explore the implications of doing so, and propose new directions for EBP research, and health policy. PMID:25023520

  19. New directions in evidence-based policy research: a critical analysis of the literature.

    PubMed

    Oliver, Kathryn; Lorenc, Theo; Innvær, Simon

    2014-01-01

    Despite 40 years of research into evidence-based policy (EBP) and a continued drive from both policymakers and researchers to increase research uptake in policy, barriers to the use of evidence are persistently identified in the literature. However, it is not clear what explains this persistence - whether they represent real factors, or if they are artefacts of approaches used to study EBP. Based on an updated review, this paper analyses this literature to explain persistent barriers and facilitators. We critically describe the literature in terms of its theoretical underpinnings, definitions of 'evidence', methods, and underlying assumptions of research in the field, and aim to illuminate the EBP discourse by comparison with approaches from other fields. Much of the research in this area is theoretically naive, focusing primarily on the uptake of research evidence as opposed to evidence defined more broadly, and privileging academics' research priorities over those of policymakers. Little empirical data analysing the processes or impact of evidence use in policy is available to inform researchers or decision-makers. EBP research often assumes that policymakers do not use evidence and that more evidence - meaning research evidence - use would benefit policymakers and populations. We argue that these assumptions are unsupported, biasing much of EBP research. The agenda of 'getting evidence into policy' has side-lined the empirical description and analysis of how research and policy actually interact in vivo. Rather than asking how research evidence can be made more influential, academics should aim to understand what influences and constitutes policy, and produce more critically and theoretically informed studies of decision-making. We question the main assumptions made by EBP researchers, explore the implications of doing so, and propose new directions for EBP research, and health policy. PMID:25023520

  20. A Retrospective Analysis of Dissemination Biases in the Brief Alcohol Intervention Literature

    PubMed Central

    Tanner-Smith, Emily E.; Polanin, Joshua R.

    2015-01-01

    This study examined dissemination and reporting biases in the brief alcohol intervention literature. We used retrospective data from 179 controlled trials included in a meta-analysis on brief alcohol interventions for adolescents and young adults. We examined whether the magnitude and direction of effect sizes were associated with publication type, identification source, language, funding, time lag between intervention and publication, number of reports, journal impact factor, and subsequent citations. Results indicated that effect sizes were larger for studies that had been funded (b = 0.14, 95% confidence interval [CI] [0.04, 0.23]), had a shorter time lag between intervention and publication (b = −0.03, 95% CI [−0.05, −.001]), and cited more frequently (b = 0.01, 95% CI [+0.00, 0.01]). Studies that were cited more frequently by other authors also had greater odds of reporting positive effects (odds ratio = 1.10, 95% CI [1.02, 1.18]). Results indicated that time lag bias has increased recently: larger and positive effect sizes were published more quickly in recent years. We found no evidence, however, that the magnitude or direction of effects was associated with location source, language, or journal impact factor. We conclude that dissemination biases may indeed occur in the social and behavioral science literature, as has been consistently documented in the medical literature. As such, primary researchers, journal reviewers, editors, systematic reviewers, and meta-analysts must be cognizant of the causes and consequences of these biases, and commit to engage in ethical research practices that attempt to minimize them. PMID:25134044

  1. Derivation and Cross-Validation of Cutoff Scores for Patients With Schizophrenia Spectrum Disorders on WAIS-IV Digit Span-Based Performance Validity Measures.

    PubMed

    Glassmire, David M; Toofanian Ross, Parnian; Kinney, Dominique I; Nitch, Stephen R

    2016-06-01

    Two studies were conducted to identify and cross-validate cutoff scores on the Wechsler Adult Intelligence Scale-Fourth Edition Digit Span-based embedded performance validity (PV) measures for individuals with schizophrenia spectrum disorders. In Study 1, normative scores were identified on Digit Span-embedded PV measures among a sample of patients (n = 84) with schizophrenia spectrum diagnoses who had no known incentive to perform poorly and who put forth valid effort on external PV tests. Previously identified cutoff scores resulted in unacceptable false positive rates and lower cutoff scores were adopted to maintain specificity levels ≥90%. In Study 2, the revised cutoff scores were cross-validated within a sample of schizophrenia spectrum patients (n = 96) committed as incompetent to stand trial. Performance on Digit Span PV measures was significantly related to Full Scale IQ in both studies, indicating the need to consider the intellectual functioning of examinees with psychotic spectrum disorders when interpreting scores on Digit Span PV measures. PMID:25997434

  2. A meta-analysis of the published literature on the effectiveness of antimicrobial soaps.

    PubMed

    Montville, Rebecca; Schaffner, Donald W

    2011-11-01

    The goal of this research was to conduct a systematic quantitative analysis of the existing data in the literature in order to determine if there is a difference between antimicrobial and nonantimicrobial soaps and to identify the methodological factors that might affect this difference. Data on hand washing efficacy and experimental conditions (sample size, wash duration, soap quantity, challenge organism, inoculum size, and neutralization method) from published studies were compiled and transferred to a relational database. A total of 25 publications, containing 374 observations, met the study selection criteria. The majority of the studies included fewer than 15 observations with each treatment and included a direct comparison between nonantimicrobial soap and antimicrobial soap. Although differences in efficacy between antimicrobial and nonantimicrobial soap were small (∼0.5-log CFU reduction difference), antimicrobial soap produced consistently statistically significantly greater reductions. This difference was true for any of the antimicrobial compounds investigated where n was >20 (chlorhexidine gluconate, iodophor, triclosan, or povidone). Average log reductions were statistically significantly greater (∼2 log CFU) when either gram-positive or gram-negative transient organisms were deliberately added to hands compared with experiments done with resident hand flora (∼0.5 log CFU). Our findings support the importance of using a high initial inoculum on the hands, well above the detection limit. The inherent variability in hand washing seen in the published literature underscores the importance of using a sufficiently large sample size to detect differences when they occur. PMID:22054188

  3. Determination of snow avalanche return periods using a tree-ring based reconstruction in the French Alps: cross validation with the predictions of a statistical-dynamical model

    NASA Astrophysics Data System (ADS)

    Schläppy, Romain; Eckert, Nicolas; Jomelli, Vincent; Grancher, Delphine; Brunstein, Daniel; Stoffel, Markus; Naaim, Mohamed

    2013-04-01

    rare events, i.e. to the tail of the local runout distance distribution. Furthermore, a good agreement exists with the statistical-numerical model's prediction, i.e. a 10-40 m difference for return periods ranging between 10 and 300 years, which is rather small with regards to the uncertainty levels to be considered in avalanche probabilistic modeling and dendrochronological reconstructions. It is important to note that such a cross validation on independent extreme predictions has never been undertaken before. It suggest that i) dendrochronological reconstruction can provide valuable information for anticipating future extreme avalanche events in the context of risk management, and, in turn, that ii) the statistical-numerical model, while properly calibrated, can be used with reasonable confidence to refine these predictions, with for instance evaluation of pressure and flow depth distributions at each position of the runout zone. A strong sensitivity to the determination of local avalanche and dendrological record frequencies is however highlighted, indicating that this step is an essential step for an accurate probabilistic characterization of large-extent events.

  4. Assessment of Student Skills for Critiquing Published Primary Scientific Literature Using a Primary Trait Analysis Scale

    PubMed Central

    VARELA, MANUEL F.; LUTNESKY, MARVIN M. F.; OSGOOD, MARCY P.

    2005-01-01

    Instructor evaluation of progressive student skills in the analysis of primary literature is critical for the development of these skills in young scientists. Students in a senior or graduate-level one-semester course in Immunology at a Masters-level comprehensive university were assessed for abilities (primary traits) to recognize and evaluate the following elements of a scientific paper: Hypothesis and Rationale, Significance, Methods, Results, Critical Thinking and Analysis, and Conclusions. We tested the hypotheses that average recognition scores vary among elements and that scores change with time differently by trait. Recognition scores (scaled 1 to 5), and differences in scores were analyzed using analysis of variance (ANOVA), regression, and analysis of covariance (ANCOVA) (n = 10 papers over 103 days). By multiple comparisons testing, we found that recognition scores statistically fell into two groups: high scores (for Hypothesis and Rationale, Significance, Methods, and Conclusions) and low scores (for Results and Critical Thinking and Analysis). Recognition scores only significantly changed with time (increased) for Hypothesis and Rationale and Results. ANCOVA showed that changes in recognition scores for these elements were not significantly different in slope (F1,16 = 0.254, P = 0.621) but the Results trait was significantly lower in elevation (F1,17 = 12.456, P = 0.003). Thus, students improved with similar trajectories, but starting and ending with lower Results scores. We conclude that students have greatest difficulty evaluating Results and critically evaluating scientific validity. Our findings show extant student skills, and the significant increase in some traits shows learning. This study demonstrates that students start with variable recognition skills and that student skills may be learned at differential rates. Faculty can use these findings or the primary trait analysis scoring scale to focus on specific paper elements for which they desire

  5. Adjuvant chemotherapy for resected colorectal cancer metastases: Literature review and meta-analysis

    PubMed Central

    Brandi, Giovanni; De Lorenzo, Stefania; Nannini, Margherita; Curti, Stefania; Ottone, Marta; Dall’Olio, Filippo Gustavo; Barbera, Maria Aurelia; Pantaleo, Maria Abbondanza; Biasco, Guido

    2016-01-01

    Surgical resection is the only option of cure for patients with metastatic colorectal cancer (CRC). However, the risk of recurrence within 18 mo after metastasectomy is around 75% and the liver is the most frequent site of relapse. The current international guidelines recommend an adjuvant therapy after surgical resection of CRC metastases despite the lower level of evidence (based on the quality of studies in this setting). However, there is still no standard treatment and the effective role of an adjuvant therapy remains controversial. The aim of this review is to report the state-of-art of systemic chemotherapy and regional chemotherapy with hepatic arterial infusion in the management of patients after resection of metastases from CRC, with a literature review and meta-analysis of the relevant randomized controlled trials. PMID:26811604

  6. The Historical Necessity for--and Difficulties with--New Historical Analysis in Introductory Literature Courses.

    ERIC Educational Resources Information Center

    Thomas, Brook

    1987-01-01

    Reflects on the role of New Historicism in teaching literature and remarks on the lack of historical awareness in students today. Offers suggestions for connecting history, as well as other disciplines, to literature to combat currently fragmented college educations. (JC)

  7. Arteriovenous malformations of the corpus callosum: Pooled analysis and systematic review of literature

    PubMed Central

    Pabaney, Aqueel H.; Ali, Rushna; Kole, Maximillian; Malik, Ghaus M.

    2016-01-01

    Background: Arteriovenous malformations (AVMs) of the corpus callosum (CC) are rare entities. We performed a systematic review of the available literature to better define the natural history, patient characteristics, and treatment options for these lesions. Methods: A MEDLINE, Google Scholar, and The Cochrane Library search were performed for studies published through June 2015. Data from all eligible studies were used to examine epidemiology, natural history, clinical features, treatment strategies, and outcomes of patients with CC-AVMs. A systematic review and pooled analysis of the literature were performed. Results: Our search yielded 37 reports and 230 patients. Mean age at presentation was 26.8 years (±13.12 years). AVMs were most commonly located in the splenium (43%), followed by the body (31%), and then the genu (23%) of the CC. A Spetzler-Martin grade of III was the most common (37%). One hundred eighty-seven (81.3%) patients presented with hemorrhage, 91 (40%) underwent microsurgical excision, and 87 (38%) underwent endovascular embolization. Radiosurgery was performed on 57 (25%) patients. Complete obliteration of the AVM was achieved in 102 (48.1%) patients and approximately twice as often when microsurgery was performed alone or in combination with other treatment modalities (94% vs. 49%; P < 0.001). Mean modified Rankin Scale (mRS) at presentation was 1.54 and mean mRS at last follow-up was 1.31. This difference was not statistically significant (P = 0.35). Conclusion: We present an analysis of the pooled data in the form of a systematic review focusing on management of CC-AVMs. This review aims to provide a valuable tool to aid in decision making when dealing with this particular subtype of AVM. PMID:27127713

  8. A critical analysis of the literature on the Internet and consumer health information.

    PubMed

    Powell, J A; Lowe, P; Griffiths, F E; Thorogood, M

    2005-01-01

    A critical review of the published literature investigating the Internet and consumer health information was undertaken in order to inform further research and policy. A qualitative, narrative method was used, consisting of a three-stage process of identification and collation, thematic coding, and critical analysis. This analysis identified five main themes in the research in this area: (1) the quality of online health information for consumers; (2) consumer use of the Internet for health information; (3) the effect of e-health on the practitioner-patient relationship; (4) virtual communities and online social support and (5) the electronic delivery of information-based interventions. Analysis of these themes revealed more about the concerns of health professionals than about the effect of the Internet on users. Much of the existing work has concentrated on quantifying characteristics of the Internet: for example, measuring the quality of online information, or describing the numbers of users in different health-care settings. There is a lack of qualitative research that explores how citizens are actually using the Internet for health care. PMID:16035990

  9. A Systematic Approach to Conducting a Non-statistical Meta-analysis of Research Literature.

    ERIC Educational Resources Information Center

    Bland, Carole J.; And Others

    1995-01-01

    A rigorous approach to conducting nonstatistical meta-analyses of research literature is presented and illustrated in a study of literature on primary care medical specialty choice. The approach described includes model development, literature retrieval and coding, quality rating, annotation of high-quality references, and synthesizing the subset…

  10. The Representation of Asian Americans in Children's Literature: A Content Analysis of Texas Reading Basals

    ERIC Educational Resources Information Center

    Tang, Agnes C.

    2013-01-01

    Children's literature serves as mirrors and windows for the students we teach today. Through literature, children should be able to see their own reflections as well as the world around them. Yet despite their long history in the United States, Asian Americans have not always been represented in children's literature. This study analyzed the…

  11. Self-expandable metal stents for malignant gastric outlet obstruction: A pooled analysis of prospective literature

    PubMed Central

    van Halsema, Emo E; Rauws, Erik AJ; Fockens, Paul; van Hooft, Jeanin E

    2015-01-01

    AIM: To provide an overview of the clinical outcomes of self-expandable metal stent (SEMS) placement for malignant gastric outlet obstruction (MGOO). METHODS: A systematic literature search was performed in PubMed of the literature published between January 2009 and March 2015. Only prospective studies that reported on the clinical success of stent placement for MGOO were included. The primary endpoint was clinical success, defined according to the definition used in the original article. Data were pooled and analyzed using descriptive statistics. Subgroup analyses were performed for partially covered SEMSs (PCSEMSs) and uncovered SEMSs (UCSEMSs) using Fisher’s exact test. RESULTS: A total of 19 studies, including 1281 patients, were included in the final analysis. Gastric (42%) and pancreatic (37%) cancer were the main causes of MGOO. UCSEMSs were used in 76% of patients and PCSEMSs in 24%. The overall pooled technical success rate was 97.3% and the clinical success rate was 85.7%. Stent dysfunction occurred in 19.6% of patients, mainly caused by re-obstruction (12.6%) and stent migration (4.3%), and was comparable between PCSEMSs and UCSEMSs (21.2% vs 19.1%, respectively, P = 0.412). Re-obstruction was more common with UCSEMSs (14.9% vs 5.1%, P < 0.001) and stent migration was more frequent after PCSEMS placement (10.9% vs 2.2%, P < 0.001). The overall perforation rate was 1.2%. Bleeding was reported in 4.1% of patients, including major bleeding in 0.8%. The median stent patency ranged from 68 to 307 d in five studies. The median overall survival ranged from 49 to 183 d in 13 studies. CONCLUSION: The clinical outcomes in this large population showed that enteral stent placement was feasible, effective and safe. Therefore, stent placement is a valid treatment option for the palliation of MGOO. PMID:26604654

  12. A Systematic Review of Perennial Staple Crops Literature Using Topic Modeling and Bibliometric Analysis

    PubMed Central

    2016-01-01

    Research on perennial staple crops has increased in the past ten years due to their potential to improve ecosystem services in agricultural systems. However, multiple past breeding efforts as well as research on traditional ratoon systems mean there is already a broad body of literature on perennial crops. In this review, we compare the development of research on perennial staple crops, including wheat, rice, rye, sorghum, and pigeon pea. We utilized the advanced search capabilities of Web of Science, Scopus, ScienceDirect, and Agricola to gather a library of 914 articles published from 1930 to the present. We analyzed the metadata in the entire library and in collections of literature on each crop to understand trends in research and publishing. In addition, we applied topic modeling to the article abstracts, a type of text analysis that identifies frequently co-occurring terms and latent topics. We found: 1.) Research on perennials is increasing overall, but individual crops have each seen periods of heightened interest and research activity; 2.) Specialist journals play an important role in supporting early research efforts. Research often begins within communities of specialists or breeders for the individual crop before transitioning to a more general scientific audience; 3.) Existing perennial agricultural systems and their domesticated crop material, such as ratoon rice systems, can provide a useful foundation for breeding efforts, accelerating the development of truly perennial crops and farming systems; 4.) Primary research is lacking for crops that are produced on a smaller scale globally, such as pigeon pea and sorghum, and on the ecosystem service benefits of perennial agricultural systems. PMID:27213283

  13. A Systematic Review of Perennial Staple Crops Literature Using Topic Modeling and Bibliometric Analysis.

    PubMed

    Kane, Daniel A; Rogé, Paul; Snapp, Sieglinde S

    2016-01-01

    Research on perennial staple crops has increased in the past ten years due to their potential to improve ecosystem services in agricultural systems. However, multiple past breeding efforts as well as research on traditional ratoon systems mean there is already a broad body of literature on perennial crops. In this review, we compare the development of research on perennial staple crops, including wheat, rice, rye, sorghum, and pigeon pea. We utilized the advanced search capabilities of Web of Science, Scopus, ScienceDirect, and Agricola to gather a library of 914 articles published from 1930 to the present. We analyzed the metadata in the entire library and in collections of literature on each crop to understand trends in research and publishing. In addition, we applied topic modeling to the article abstracts, a type of text analysis that identifies frequently co-occurring terms and latent topics. We found: 1.) Research on perennials is increasing overall, but individual crops have each seen periods of heightened interest and research activity; 2.) Specialist journals play an important role in supporting early research efforts. Research often begins within communities of specialists or breeders for the individual crop before transitioning to a more general scientific audience; 3.) Existing perennial agricultural systems and their domesticated crop material, such as ratoon rice systems, can provide a useful foundation for breeding efforts, accelerating the development of truly perennial crops and farming systems; 4.) Primary research is lacking for crops that are produced on a smaller scale globally, such as pigeon pea and sorghum, and on the ecosystem service benefits of perennial agricultural systems. PMID:27213283

  14. Breast volumetric analysis for aesthetic planning in breast reconstruction: a literature review of techniques

    PubMed Central

    Rozen, Warren Matthew; Spychal, Robert T.; Hunter-Smith, David J.

    2016-01-01

    Background Accurate volumetric analysis is an essential component of preoperative planning in both reconstructive and aesthetic breast procedures towards achieving symmetrization and patient-satisfactory outcome. Numerous comparative studies and reviews of individual techniques have been reported. However, a unifying review of all techniques comparing their accuracy, reliability, and practicality has been lacking. Methods A review of the published English literature dating from 1950 to 2015 using databases, such as PubMed, Medline, Web of Science, and EMBASE, was undertaken. Results Since Bouman’s first description of water displacement method, a range of volumetric assessment techniques have been described: thermoplastic casting, direct anthropomorphic measurement, two-dimensional (2D) imaging, and computed tomography (CT)/magnetic resonance imaging (MRI) scans. However, most have been unreliable, difficult to execute and demonstrate limited practicability. Introduction of 3D surface imaging has revolutionized the field due to its ease of use, fast speed, accuracy, and reliability. However, its widespread use has been limited by its high cost and lack of high level of evidence. Recent developments have unveiled the first web-based 3D surface imaging program, 4D imaging, and 3D printing. Conclusions Despite its importance, an accurate, reliable, and simple breast volumetric analysis tool has been elusive until the introduction of 3D surface imaging technology. However, its high cost has limited its wide usage. Novel adjunct technologies, such as web-based 3D surface imaging program, 4D imaging, and 3D printing, appear promising. PMID:27047788

  15. Improved enteral tolerance following step procedure: systematic literature review and meta-analysis.

    PubMed

    Fernandes, Melissa A; Usatin, Danielle; Allen, Isabel E; Rhee, Sue; Vu, Lan

    2016-10-01

    Surgical management of children with short bowel syndrome (SBS) changed with the introduction of the serial transverse enteroplasty procedure (STEP). We conducted a systematic review and meta-analysis using MEDLINE and SCOPUS to determine if children with SBS had improved enteral tolerance following STEP. Studies were included if information about a child's pre- and post-STEP enteral tolerance was provided. A random effects meta-analysis provided a summary estimate of the proportion of children with enteral tolerance increase following STEP. From 766 abstracts, seven case series involving 86 children were included. Mean percent tolerance of enteral nutrition improved from 35.1 to 69.5. Sixteen children had no enteral improvement following STEP. A summary estimate showed that 87 % (95 % CI 77-95 %) of children who underwent STEP had an increase in enteral tolerance. Compilation of the literature supports the belief that SBS subjects' enteral tolerance improves following STEP. Enteral nutritional tolerance is a measure of efficacy of STEP and should be presented as a primary or secondary outcome. By standardizing data collection on children undergoing STEP procedure, better determination of nutritional benefit from STEP can be ascertained. PMID:27461428

  16. Accuracy of mucocutaneous leishmaniasis diagnosis using polymerase chain reaction: systematic literature review and meta-analysis

    PubMed Central

    Gomes, Ciro Martins; Mazin, Suleimy Cristina; dos Santos, Elisa Raphael; Cesetti, Mariana Vicente; Bächtold, Guilherme Albergaria Brízida; Cordeiro, João Henrique de Freitas; Theodoro, Fabrício Claudino Estrela Terra; Damasco, Fabiana dos Santos; Carranza, Sebastián Andrés Vernal; Santos, Adriana de Oliveira; Roselino, Ana Maria; Sampaio, Raimunda Nonata Ribeiro

    2015-01-01

    The diagnosis of mucocutaneous leishmaniasis (MCL) is hampered by the absence of a gold standard. An accurate diagnosis is essential because of the high toxicity of the medications for the disease. This study aimed to assess the ability of polymerase chain reaction (PCR) to identify MCL and to compare these results with clinical research recently published by the authors. A systematic literature review based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses: the PRISMA Statement was performed using comprehensive search criteria and communication with the authors. A meta-analysis considering the estimates of the univariate and bivariate models was performed. Specificity near 100% was common among the papers. The primary reason for accuracy differences was sensitivity. The meta-analysis, which was only possible for PCR samples of lesion fragments, revealed a sensitivity of 71% [95% confidence interval (CI) = 0.59; 0.81] and a specificity of 93% (95% CI = 0.83; 0.98) in the bivariate model. The search for measures that could increase the sensitivity of PCR should be encouraged. The quality of the collected material and the optimisation of the amplification of genetic material should be prioritised. PMID:25946238

  17. Gastroesophageal reflux/laryngopharyngeal reflux disease: a critical analysis of the literature.

    PubMed

    Kotby, M N; Hassan, O; El-Makhzangy, Aly M N; Farahat, M; Milad, P

    2010-02-01

    Despite the wealth of publications on the topic of gastroesophageal reflux and its variants, there are still many unsettled questions before one accepts the prevalent cult of "reflux disease". This study is summarizing the results of the critical analysis of the literature, 436 articles,during the last 30 years. The golden test to identify the patient group suffering from this rather common phenomenon is still lacking. The claimed extra-esophageal manifestations especially in the larynx are non-specific and may be caused by other factors well-known within the domain of vocology. The response to therapeutic intervention still lacks serious well-controlled studies to allow drawing reasonable conclusions. An outstanding feature of the publications is that most of them fall in the category of "review". It seems that there is a tendency to perpetuate the concept without objective criticism. Following the analysis, a recommendation for anew plan of original well-controlled multi-center studies is highlighted. PMID:20033194

  18. Electrochemical Performance and Stability of the Cathode for Solid Oxide Fuel Cells. I. Cross Validation of Polarization Measurements by Impedance Spectroscopy and Current-Potential Sweep

    SciTech Connect

    Zhou, Xiao Dong; Pederson, Larry R.; Templeton, Jared W.; Stevenson, Jeffry W.

    2009-12-09

    The aim of this paper is to address three issues in solid oxide fuel cells: (1) cross-validation of the polarization of a single cell measured using both dc and ac approaches, (2) the precise determination of the total areal specific resistance (ASR), and (3) understanding cathode polarization with LSCF cathodes. The ASR of a solid oxide fuel cell is a dynamic property, meaning that it changes with current density. The ASR measured using ac impedance spectroscopy (low frequency interception with real Z´ axis of ac impedance spectrum) matches with that measured from a dc IV sweep (the tangent of dc i-V curve). Due to the dynamic nature of ASR, we found that an ac impedance spectrum measured under open circuit voltage or on a half cell may not represent cathode performance under real operating conditions, particularly at high current density. In this work, the electrode polarization was governed by the cathode activation polarization; the anode contribution was negligible.

  19. Robustness of two single-item self-esteem measures: cross-validation with a measure of stigma in a sample of psychiatric patients.

    PubMed

    Bagley, Christopher

    2005-08-01

    Robins' Single-item Self-esteem Inventory was compared with a single item from the Coopersmith Self-esteem. Although a new scoring format was used, there was good evidence of cross-validation in 83 current and former psychiatric patients who completed Harvey's adapted measure of stigma felt and experienced by users of mental health services. Scores on the two single-item self-esteem measures correlated .76 (p < .001), .76 and .71 with scores on the longer scales from which they were taken, and .58 and .53, respectively, with Harvey's adapted stigma scale. Complex and perhaps competing models may explain links between felt stigma and poorer self-esteem in users of mental health services. PMID:16350637

  20. Determinants of Exposure to Metalworking Fluid Aerosols: A Literature Review and Analysis of Reported Measurements

    PubMed Central

    Park, Donguk; Stewart, Patrica A.; Coble, Joseph B.

    2009-01-01

    An extensive literature review of published metalworking fluid (MWF) aerosol measurement data was conducted to identify the major determinants that may affect exposure to aerosol fractions (total or inhalable, thoracic and respirable) and mass median diameters (MMDs). The identification of determinants was conducted through published studies and analysis of published measurement levels. For the latter, weighted arithmetic means (WAMs) by number of measurements were calculated and compared using analysis of variance and t-tests. The literature review found that the major factors affecting aerosol exposure levels were, primarily, decade, type of industry, operation and fluid and engineering control measures. Our analysis of total aerosol levels found a significant decline in measured levels from an average of 5.36 mg m−3 prior to the 1970s and 2.52 mg m−3 in the 1970s to 1.21 mg m−3 in the 1980s, 0.50 mg m−3 in the 1990s and 0.55 mg m−3 in the 2000s. Significant declines from the 1990s to the 2000s also were found in thoracic fraction levels (0.48 versus 0.40 mg m−3), but not for the respirable fraction. The WAMs for the auto (1.47 mg m−3) and auto parts manufacturing industry (1.83 mg m−3) were significantly higher than that for small-job machine shops (0.68 mg m−3). In addition, a significant difference in the thoracic WAM was found between the automotive industry (0.46 mg m−3) and small-job machine shops (0.32 mg m−3). Operation type, in particular, grinding, was a significant factor affecting the total aerosol fraction [grinding operations (1.75 mg m−3) versus other machining (0.95 mg m−3)], but the levels associated with these operations were not statistically different for either the thoracic or the respirable fractions. Across all decades, the total aerosol fraction for straight oils (1.49 mg m−3) was higher than for other fluid types (soluble = 1.08 mg m−3, synthetic = 0.52 mg m−3 and semisynthetic = 0.50 mg m−3

  1. Determinants of exposure to metalworking fluid aerosols: a literature review and analysis of reported measurements.

    PubMed

    Park, Donguk; Stewart, Patrica A; Coble, Joseph B

    2009-04-01

    An extensive literature review of published metalworking fluid (MWF) aerosol measurement data was conducted to identify the major determinants that may affect exposure to aerosol fractions (total or inhalable, thoracic and respirable) and mass median diameters (MMDs). The identification of determinants was conducted through published studies and analysis of published measurement levels. For the latter, weighted arithmetic means (WAMs) by number of measurements were calculated and compared using analysis of variance and t-tests. The literature review found that the major factors affecting aerosol exposure levels were, primarily, decade, type of industry, operation and fluid and engineering control measures. Our analysis of total aerosol levels found a significant decline in measured levels from an average of 5.36 mg m(-3) prior to the 1970s and 2.52 mg m(-3) in the 1970s to 1.21 mg m(-3) in the 1980s, 0.50 mg m(-3) in the 1990s and 0.55 mg m(-3) in the 2000s. Significant declines from the 1990s to the 2000s also were found in thoracic fraction levels (0.48 versus 0.40 mg m(-3)), but not for the respirable fraction. The WAMs for the auto (1.47 mg m(-3)) and auto parts manufacturing industry (1.83 mg m(-3)) were significantly higher than that for small-job machine shops (0.68 mg m(-3)). In addition, a significant difference in the thoracic WAM was found between the automotive industry (0.46 mg m(-3)) and small-job machine shops (0.32 mg m(-3)). Operation type, in particular, grinding, was a significant factor affecting the total aerosol fraction [grinding operations (1.75 mg m(-3)) versus other machining (0.95 mg m(-3))], but the levels associated with these operations were not statistically different for either the thoracic or the respirable fractions. Across all decades, the total aerosol fraction for straight oils (1.49 mg m(-3)) was higher than for other fluid types (soluble = 1.08 mg m(-3), synthetic = 0.52 mg m(-3) and semisynthetic = 0.50 mg m(-3)). Fluid type

  2. SILAC-Pulse Proteolysis: A Mass Spectrometry-Based Method for Discovery and Cross-Validation in Proteome-Wide Studies of Ligand Binding

    NASA Astrophysics Data System (ADS)

    Adhikari, Jagat; Fitzgerald, Michael C.

    2014-12-01

    Reported here is the use of stable isotope labeling with amino acids in cell culture (SILAC) and pulse proteolysis (PP) for detection and quantitation of protein-ligand binding interactions on the proteomic scale. The incorporation of SILAC into PP enables the PP technique to be used for the unbiased detection and quantitation of protein-ligand binding interactions in complex biological mixtures (e.g., cell lysates) without the need for prefractionation. The SILAC-PP technique is demonstrated in two proof-of-principle experiments using proteins in a yeast cell lysate and two test ligands including a well-characterized drug, cyclosporine A (CsA), and a non-hydrolyzable adenosine triphosphate (ATP) analogue, adenylyl imidodiphosphate (AMP-PNP). The well-known tight-binding interaction between CsA and cyclophilin A was successfully detected and quantified in replicate analyses, and a total of 33 proteins from a yeast cell lysate were found to have AMP-PNP-induced stability changes. In control experiments, the method's false positive rate of protein target discovery was found to be in the range of 2.1% to 3.6%. SILAC-PP and the previously reported stability of protein from rates of oxidation (SPROX) technique both report on the same thermodynamic properties of proteins and protein-ligand complexes. However, they employ different probes and mass spectrometry-based readouts. This creates the opportunity to cross-validate SPROX results with SILAC-PP results, and vice-versa. As part of this work, the SILAC-PP results obtained here were cross-validated with previously reported SPROX results on the same model systems to help differentiate true positives from false positives in the two experiments.

  3. Association between diabetes mellitus and osteoarthritis: systematic literature review and meta-analysis

    PubMed Central

    Louati, Karine; Vidal, Céline; Berenbaum, Francis; Sellam, Jérémie

    2015-01-01

    Objectives To investigate the prevalence of osteoarthritis (OA) in patients with diabetes mellitus (DM) and prevalence of DM in patients with OA and whether OA and DM are associated. Design A systematic literature review and meta-analysis. We included cohort, case–control and cross-sectional studies assessing the number of patients with DM and/or OA. The mean prevalence of OA among patients with DM and DM among patients with OA was calculated. Data from trials assessing an association of diabetes and OA were pooled and results are presented as unadjusted OR and 95% CI. Results From the 299 publications, we included 49 studies in the analysis, including 28 cross-sectional studies, 11 cohort studies and 10 case–control studies. In all, 21, 5 and 23 articles involved patients with OA exclusively, patients with DM and the general population, respectively. For 5788 patients with DM, the mean OA prevalence was 29.5±1.2%. For 645 089 patients with OA, the prevalence of DM was 14.4±0.1%. The risk of OA was greater in the DM than non-DM population (OR=1.46 (1.08 to 1.96), p=0.01), as was DM in the OA than non-OA population (OR=1.41 (1.21 to 1.65), p<0.00 001). Among the 12 studies reporting an OR adjusted on at least the body mass index, 5 showed no association of DM and OA and 7 identified DM as an independent risk factor. Conclusions This meta-analysis highlights a high frequency of OA in patients with DM and an association between both diseases, representing a further step towards the individualisation of DM-related OA within a metabolic OA phenotype. PMID:26535137

  4. "Demographic faultlines: A meta-analysis of the literature": Retraction of Thatcher and Patel (2011).

    PubMed

    2016-08-01

    Reports the retraction of "Demographic faultlines: A meta-analysis of the literature" by Sherry M. B. Thatcher and Pankaj C. Patel (, 2011[Nov], Vol 96[6], 1119-1139). At the request of the editor and in consultation with the American Psychological Association, the article is being retracted. This action is a result of a review by the editor and two additional experts that determined that there are significant errors in Tables 1, 2, and 3 which may affect the overall conclusions of the article. Co-author Pankaj C. Patel led the analysis, and both authors acknowledge that inaccuracies were made. The retraction of this article does not preclude resubmission of a new article that addresses the issues noted in the retraction. (The following abstract of the original article appeared in record .) We propose and test a theoretical model focusing on antecedents and consequences of demographic faultlines. We also posit contingencies that affect overall team dynamics in the context of demographic faultlines, such as the study setting and performance measurement. Using meta-analysis structural equation modeling with a final data set consisting of 311 data points (i.e., [predictor-criterion relationships]), from 39 studies that were obtained from 36 papers with a total sample size of 24,388 individuals in 4,366 teams, we found that sex and racial diversity increased demographic faultline strength more than did diversity on the attributes of functional background, educational background, age, and tenure. Demographic faultline strength was found to increase task and relationship conflict as well as decrease team cohesion. Furthermore, although demographic faultline strength decreased both team satisfaction and team performance, there was a stronger decrease in team performance than in team satisfaction. The strength of these relationships increased when the study was conducted in the lab rather than in the field. We describe the theoretical and practical implications of these

  5. Evaluating the Replicability of Multivariate Assessment and Evaluation Results: A Review of Various Applications of the Cross-Validation Logic.

    ERIC Educational Resources Information Center

    Crowley, Susan L.; Thompson, Bruce

    Selected methods for evaluating the stability of research results empirically are described, especially with regard to multivariate analysis. It is critically important to evaluate the influences of sampling error on obtained results; statistical significance testing does not inform judgment regarding the probable replicability or the sampling…

  6. A bayesian cross-validation approach to evaluate genetic baselines and forecast the necessary number of informative single nucleotide polymorphisms

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mixed stock analysis (MSA) is a powerful tool used in the management and conservation of numerous species. Its function is to estimate the sources of contributions in a mixture of populations of a species, as well as to estimate the probabilities that individuals originated at a source. Considerable...

  7. Cost-benefit analysis of drug treatment services: review of the literature*

    PubMed

    Cartwright, William S.

    2000-03-01

    BACKGROUND: How valuable is public investment in treatment for drug abuse and dependency in the real world of everyday practice? Does drug abuse treatment provide benefits and how are they valued? What are the costs of obtaining outcomes and benefits? Cost-benefit analysis attempts to answer these questions in a standard analytic framework. AIMS: This paper reviews cost-benefit analyses with scientific merit so that analysts will have a current picture of the state of the research. It will also give public decision-makers information with regards to the available evidence for policy purposes. METHOD: Bibliographic searches were performed. Studies were obtained through the assistance of the Parklawn Health Library system, a component of the US Public Health Service. Selected studies were from the scientific literature with the exception of eight studies published as governmental reports. RESULTS: Cost-benefit studies have fallen into the following categories: (i) planning models for delivery systems in states and cities; (ii) short-term follow-up studies of individuals, (iii) single individual programs and (iv) state system's monitoring of outcomes. In 18 cost-benefit studies, a persistent finding is that benefits exceed costs, even when not all benefits are accounted for in the analysis. Much variation is found in the implementation of cost-benefit methods, and this is detailed across discussions of effectiveness, benefits and costs. Studies have emphasized the cost savings to society from the reduction in external costs created by the behavioral consequences of addiction and drug use. DISCUSSION: Economic analysis of drug treatment requires sophisticated conceptualization and measurement. Cost-benefit analysis of drug treatment has been a significant analytical exercise since the early 1970s when the public drug treatment system was founded in the United States. CONCLUSION: Drug abuse treatment services may be considered as contributing positive economic returns

  8. Swallowing sounds in speech therapy practice: a critical analysis of the literature.

    PubMed

    Ferrucci, Juliana Lopes; Mangilli, Laura Davison; Sassi, Fernanda Chiarion; Limongi, Suelly Cecilia Olivan; Andrade, Claudia Regina Furquim de

    2013-12-01

    This study aimed to investigate international scientific papers published on the subject of cervical auscultation and its use in speech therapy. The study involved a qualitative review of the literature spanning the last 10 years. Articles were selected from the PubMed database using the following keywords: cervical auscultation, swallowing and swallowing disorders. Research was included that was conducted on adult humans (over 18 years of age) and was written in English. Each citation retrieved from the database was analyzed independently by each of the study researchers to ascertain its relevance for inclusion in the study. The methodology involved formulating the research question, locating and selecting studies and critically evaluating the articles according to the precepts of the Cochrane Handbook. As a result, 35 studies were identified; 13 articles were analyzed because they allowed access to the full text and were related directly to the subject. We found that the studies were performed with groups of healthy subjects and subjects with different types of base pathology. Some studies compared the patterns found in the different groups. Some of the research sought to study the pattern of swallowing sounds with different factors - evaluator experience, the specificity and sensitivity of the method and how to improve the technique of cervical auscultation through the use of instruments other than the stethoscope. The conclusion of this critical analysis is that cervical auscultation is an important tool to be used in conjunction with other assessment methods in the routine clinical evaluation of swallowing. PMID:24488399

  9. 5-ALA Fluorescence Image Guided Resection of Glioblastoma Multiforme: A Meta-Analysis of the Literature

    PubMed Central

    Eljamel, Samy

    2015-01-01

    Background: Glioblastoma multiforme (GBM) is one of the most deadly cancers in humans. Despite recent advances in anti-cancer therapies, most patients with GBM die from local disease progression. Fluorescence image guided surgical resection (FIGR) was recently advocated to enhance local control of GBM. This is meta-analyses of 5-aminolevulinic (5-ALA) induced FIGR. Materials: Review of the literature produced 503 potential publications; only 20 of these fulfilled the inclusion criteria of this analysis, including a total of 565 patients treated with 5-ALA-FIGR reporting on its outcomes and 800 histological samples reporting 5-ALA-FIGR sensitivity and specificity. Results: The mean gross total resection (GTR) rate was 75.4% (95% CI: 67.4–83.5, p < 0.001). The mean time to tumor progression (TTP) was 8.1 months (95% CI: 4.7–12, p < 0.001). The mean overall survival gain reported was 6.2 months (95% CI: −1–13, p < 0.001). The specificity was 88.9% (95% CI: 83.9–93.9, p < 0.001) and the sensitivity was 82.6% (95% CI: 73.9–91.9, p < 0.001). Conclusion: 5-ALA-FIGR in GBM is highly sensitive and specific, and imparts significant benefits to patients in terms of improved GTR and TTP. PMID:25961952

  10. A meta-analysis of the RTI literature for children at risk for reading disabilities.

    PubMed

    Tran, Loan; Sanchez, Tori; Arellano, Brenda; Lee Swanson, H

    2011-01-01

    This article synthesizes the literature comparing at-risk children designated as responders and low responders to interventions in reading. The central question addressed in this review is whether individual differences in reading-related skills at pretest predict responders at posttest across a variety of interventions and sets of criteria for determining responding and low responding. A total of 13 studies met criteria for the meta-analysis, yielding 107 weighted effect sizes (ESs) at posttest (M = .76, SE = .03, 95% confidence interval [CI] =.71, .81) and 108 weighted ESs at pretest (M = 1.02, SE = .03, CI = 1.02, 1.13). The results showed that the magnitude of ES between responders and low responders increased from pretest to posttest on measures of reading (e.g., real word identification = 1.06 vs. 1.53, word attack = 1.10 vs. 1.28, and passage comprehension, 0.45 vs. 1.43). Hierarchical linear modeling indicated that overall posttest ESs were significantly moderated by pretest scores as well as the type of measure administered, whereas no significant moderating effects were found for number of weeks of intervention, length of sessions, number of sessions, type of intervention (one-to-one vs. small group instruction), and criteria for defining responders (cutoff, scores, discrepancy, benchmark). Overall, the synthesis suggested that regardless of type of treatment and identification criteria, response-to-intervention (RTI) conditions were not effective in mitigating learner characteristics related to pretest conditions. PMID:21521870

  11. Economic Evaluation in Global Perspective: A Bibliometric Analysis of the Recent Literature.

    PubMed

    Pitt, Catherine; Goodman, Catherine; Hanson, Kara

    2016-02-01

    We present a bibliometric analysis of recently published full economic evaluations of health interventions and reflect critically on the implications of our findings for this growing field. We created a database drawing on 14 health, economic, and/or general literature databases for articles published between 1 January 2012 and 3 May 2014 and identified 2844 economic evaluations meeting our criteria. We present findings regarding the sensitivity, specificity, and added value of searches in the different databases. We examine the distribution of publications between countries, regions, and health areas studied and compare the relative volume of research with disease burden. We analyse authors' country and institutional affiliations, journals and journal type, language, and type of economic evaluation conducted. More than 1200 economic evaluations were published annually, of which 4% addressed low-income countries, 4% lower-middle-income countries, 14% upper-middle-income countries, and 83% high-income countries. Across country income levels, 53, 54, 86, and 100% of articles, respectively, included an author based in a country within the income level studied. Biomedical journals published 74% of economic evaluations. The volume of research across health areas correlates more closely with disease burden in high-income than in low-income and middle-income countries. Our findings provide an empirical basis for further study on methods, research prioritization, and capacity development in health economic evaluation. PMID:26804359

  12. Reading disabilities in children: A selective meta-analysis of the cognitive literature.

    PubMed

    Kudo, Milagros F; Lussier, Cathy M; Swanson, H Lee

    2015-05-01

    This article synthesizes literature that compares the academic, cognitive, and behavioral performance of children with and without reading disabilities (RD). Forty-eight studies met the criteria for the meta-analysis, yielding 735 effect sizes (ESs) with an overall weighted ES of 0.98. Small to high ESs in favor of children without RD emerged on measures of cognition (rapid naming [ES = 0.89], phonological awareness [ES = 1.00], verbal working memory [ES = 0.79], short-term memory [ES = 0.56], visual-spatial memory [ES = 0.48], and executive processing [ES = 0.67]), academic achievement (pseudoword reading [ES = 1.85], math [ES = 1.20], vocabulary [ES = 0.83], spelling [ES = 1.25], and writing [ES = 1.20]), and behavior skills (ES = 0.80). Hierarchical linear modeling indicated that specific cognitive process measures (verbal working memory, visual-spatial memory, executive processing, and short-term memory) and intelligence measures (general and verbal intelligence) significantly moderated overall group effect size differences. Overall, the results supported the assumption that cognitive deficits in children with RD are persistent. PMID:25725389

  13. Development of ADOCS controllers and control laws. Volume 2: Literature review and preliminary analysis

    NASA Technical Reports Server (NTRS)

    Landis, Kenneth H.; Glusman, Steven I.

    1985-01-01

    The Advanced Cockpit Controls/Advanced Flight Control System (ACC/AFCS) study was conducted by the Boeing Vertol Company as part of the Army's Advanced Digital/Optical Control System (ADOCS) program. Specifically, the ACC/AFCS investigation was aimed at developing the flight control laws for the ADOCS demonstrator aircraft which will provide satisfactory handling qualities for an attack helicopter mission. The three major elements of design considered are as follows: Pilot's integrated Side-Stick Controller (SSC) -- Number of axes controlled; force/displacement characteristics; ergonomic design. Stability and Control Augmentation System (SCAS)--Digital flight control laws for the various mission phases; SCAS mode switching logic. Pilot's Displays--For night/adverse weather conditions, the dynamics of the superimposed symbology presented to the pilot in a format similar to the Advanced Attack Helicopter (AAH) Pilot Night Vision System (PNVS) for each mission phase as a function of ACAS characteristics; display mode switching logic. Findings from the literature review and the analysis and synthesis of desired control laws are reported in Volume 2. Conclusions drawn from pilot rating data and commentary were used to formulate recommendations for the ADOCS demonstrator flight control system design. The ACC/AFCS simulation data also provide an extensive data base to aid the development of advanced flight control system design for future V/STOL aircraft.

  14. Does benzene cause multiple myeloma? An analysis of the published case-control literature

    SciTech Connect

    Bezabeh, S.; Engel, A.; Morris, C.B.; Lamm, S.H.

    1996-12-01

    Two case series and two epidemiological studies in the 1970s and 1980s suggested that benzene exposure might be a risk factor for multiple myeloma. An analysis has now been conducted of the published population-based and hospital-based case-control studies published through mid-1995 that permit examination of the relationship between multiple myeloma and benzene exposure or surrogates for benzene exposure. No increased association was found between multiple myeloma and benzene exposure or exposure to chemical groups that included benzene. The odds ratios from these analyses approximated 1.0. Exposures to petroleum products and employment in petroleum-related occupations did not appear to be risk factors for multiple myeloma. Cigarette smoking, as a surrogate of benzene exposure, was not found to be associated with multiple myeloma, while some studies of products of combustion described as {open_quotes}engine exhaust{close_quotes} did show a significant association with multiple myeloma. In toto, the population-based and hospital-based case-control literature indicated that benzene exposure was not a likely causal factor for multiple myeloma. 28 refs., 3 figs., 1 tab.

  15. Unhealthy diets, obesity and time discounting: a systematic literature review and network analysis

    PubMed Central

    Reeves, Aaron; McKee, Martin; Galea, Gauden; Stuckler, David

    2016-01-01

    Summary There is an increasing policy commitment to address the avoidable burdens of unhealthy diet, overweight and obesity. However, to design effective policies, it is important to understand why people make unhealthy dietary choices. Research from behavioural economics suggests a critical role for time discounting, which describes how people's value of a reward, such as better health, decreases with delay to its receipt. We systematically reviewed the literature on the relationship of time discounting with unhealthy diets, overweight and obesity in Web of Science and PubMed. We identified 41 studies that met our inclusion criteria as they examined the association between time discount rates and (i) unhealthy food consumption; (ii) overweight and (iii) response to dietary and weight loss interventions. Nineteen out of 25 cross‐sectional studies found time discount rates positively associated with overweight, obesity and unhealthy diets. Experimental studies indicated that lower time discounting was associated with greater weight loss. Findings varied by how time discount rates were measured; stronger results were observed for food than monetary‐based measurements. Network co‐citation analysis revealed a concentration of research in nutrition journals. Overall, there is moderate evidence that high time discounting is a significant risk factor for unhealthy diets, overweight and obesity and may serve as an important target for intervention. © 2016 The Authors Obesity Reviews published by John Wiley & Sons Ltd on behalf of International Association for the Study of Obesity (IASO) PMID:27256685

  16. Unhealthy diets, obesity and time discounting: a systematic literature review and network analysis.

    PubMed

    Barlow, Pepita; Reeves, Aaron; McKee, Martin; Galea, Gauden; Stuckler, David

    2016-09-01

    There is an increasing policy commitment to address the avoidable burdens of unhealthy diet, overweight and obesity. However, to design effective policies, it is important to understand why people make unhealthy dietary choices. Research from behavioural economics suggests a critical role for time discounting, which describes how people's value of a reward, such as better health, decreases with delay to its receipt. We systematically reviewed the literature on the relationship of time discounting with unhealthy diets, overweight and obesity in Web of Science and PubMed. We identified 41 studies that met our inclusion criteria as they examined the association between time discount rates and (i) unhealthy food consumption; (ii) overweight and (iii) response to dietary and weight loss interventions. Nineteen out of 25 cross-sectional studies found time discount rates positively associated with overweight, obesity and unhealthy diets. Experimental studies indicated that lower time discounting was associated with greater weight loss. Findings varied by how time discount rates were measured; stronger results were observed for food than monetary-based measurements. Network co-citation analysis revealed a concentration of research in nutrition journals. Overall, there is moderate evidence that high time discounting is a significant risk factor for unhealthy diets, overweight and obesity and may serve as an important target for intervention. © 2016 The Authors Obesity Reviews published by John Wiley & Sons Ltd on behalf of International Association for the Study of Obesity (IASO). PMID:27256685

  17. The Constitution of Outdoor Education Groups: An Analysis of the Literature?

    ERIC Educational Resources Information Center

    Zink, Robyn

    2010-01-01

    Groups are ubiquitous in outdoor education and while there is a lot of literature on groups, there is limited examination of the assumptions made about groups and the effects these assumptions have on the practices of outdoor education. I utilise some of Michel Foucault's (1992) tools to investigate literature on outdoor education groups.…

  18. Homonormativity in Children's Literature: An Intersectional Analysis of Queer-Themed Picture Books

    ERIC Educational Resources Information Center

    Lester, Jasmine Z.

    2014-01-01

    Effective social justice movements, including those at the level of children's literature, address the ways different forms of oppression intersect and affect the experiences of diverse queer identities. Children's literature can help combat heteronormative discourse by instilling at a young age the inherent value of all people.…

  19. Introducing Pre-University Students to Primary Scientific Literature through Argumentation Analysis

    ERIC Educational Resources Information Center

    Koeneman, Marcel; Goedhart, Martin; Ossevoort, Miriam

    2013-01-01

    Primary scientific literature is one of the most important means of communication in science, written for peers in the scientific community. Primary literature provides an authentic context for showing students how scientists support their claims. Several teaching strategies have been proposed using (adapted) scientific publications, some for…

  20. A Quasi Meta-Analysis of the God Concept Literature from 1970 to 1994.

    ERIC Educational Resources Information Center

    Giesbrecht, Norman

    This literature review examines the "God concept," defined as the "cognitive or affective internal psychological representation of God." Most religions have a conception of God. In this review relevant literature focused on: (1) conceptual representations of God; (2) factors related to or predictive of these representations; and/or (3) development…

  1. Coping with Male Mid-Life: A Systematic Analysis Using Literature as a Data Source.

    ERIC Educational Resources Information Center

    Merriam, Sharan

    This paper uses twentieth century American fictional literature to examine middle-age male development. Two historical periods, post World War I and post World War II, were chosen to provide a wide data base which could be analyzed over time. With seven American literature professors' aid, works of literary merit with a middle-aged male…

  2. Corporal Punishment in the Care of Children: A Literature Review and Analysis.

    ERIC Educational Resources Information Center

    Anderson, Rosalie; And Others

    The literature on the use of corporal punishment with children is reviewed, legal opinions on the issue are cited, and research on the social and behavioral aspects of corporal punishment are discussed. The literature is noted to focus on guidelines for administering corporal punishment, the importance of the relationship between the adult and…

  3. Qualitative Environmental Health Research: An Analysis of the Literature, 1991–2008

    PubMed Central

    Scammell, Madeleine Kangsen

    2010-01-01

    Background Recent articles have advocated for the use of qualitative methods in environmental health research. Qualitative research uses nonnumeric data to understand people’s opinions, motives, understanding, and beliefs about events or phenomena. Objective In this analysis of the literature, I report the use of qualitative methods and data in the study of the relationship between environmental exposures and human health. Data sources A primary search on ISI Web of Knowledge/Web of Science for peer-reviewed journal articles dated from 1991 through 2008 included the following three terms: qualitative, environ*, and health. Inclusion and exclusion criteria are described. Data extraction Searches resulted in 3,155 records. Data were extracted and findings of articles analyzed to determine where and by whom qualitative environmental health research is conducted and published, the types of methods and analyses used in qualitative studies of environmental health, and the types of information qualitative data contribute to environmental health. Data synthesis Ninety-one articles met inclusion criteria. These articles were published in 58 different journals, with a maximum of eight for a single journal. The results highlight a diversity of disciplines and techniques among researchers who used qualitative methods to study environmental health, with most studies relying on one-on-one interviews. Details of the analyses were absent from a large number of studies. Nearly all of the studies identified increased scientific understanding of lay perceptions of environmental health exposures. Discussion and conclusions Qualitative data are published in traditionally quantitative environmental health studies to a limited extent. However, this analysis demonstrates the potential of qualitative data to improve understanding of complex exposure pathways, including the influence of social factors on environmental health, and health outcomes. PMID:20421191

  4. Drug repositioning in SLE: crowd-sourcing, literature-mining and Big Data analysis.

    PubMed

    Grammer, A C; Ryals, M M; Heuer, S E; Robl, R D; Madamanchi, S; Davis, L S; Lauwerys, B; Catalina, M D; Lipsky, P E

    2016-09-01

    Lupus patients are in need of modern drugs to treat specific manifestations of their disease effectively and safely. In the past half century, only one new treatment has been approved by the US Food and Drug Administration (FDA) for systemic lupus erythematosus (SLE). In 2014-2015, the FDA approved 71 new drugs, only one of which targeted a rheumatic disease and none of which was approved for use in SLE. Repositioning/repurposing drugs approved for other diseases using multiple approaches is one possible means to find new treatment options for lupus patients. "Big Data" analysis approaches this challenge from an unbiased standpoint whereas literature mining and crowd sourcing for candidates assessed by the CoLTs (Combined Lupus Treatment Scoring) system provide a hypothesis-based approach to rank potential therapeutic candidates for possible clinical application. Both approaches mitigate risk since the candidates assessed have largely been extensively tested in clinical trials for other indications. The usefulness of a multi-pronged approach to drug repositioning in lupus is highlighted by orthogonal confirmation of hypothesis-based drug repositioning predictions by "Big Data" analysis of differentially expressed genes from lupus patient samples. The goal is to identify novel therapies that have the potential to affect disease processes specifically. Involvement of SLE patients and the scientists that study this disease in thinking about new drugs that may be effective in lupus though crowd-sourcing sites such as LRxL-STAT (www.linkedin.com/in/lrxlstat) is important in stimulating the momentum needed to test these novel drug targets for efficacy in lupus rapidly in small, proof-of-concept trials conducted by LuCIN, the Lupus Clinical Investigators Network (www.linkedin.com/in/lucinstat). PMID:27497259

  5. Health, Climate Change and Sustainability: A systematic Review and Thematic Analysis of the Literature

    PubMed Central

    Nichols, A.; Maynard, V.; Goodman, B.; Richardson, J.

    2009-01-01

    Background: Evidence of climate change and its impact continues to be accumulated, and it is argued that the consequences of climate change are likely to result in an increased demand on health services. It has been claimed that climate change presents new challenges for health services and that strategies should be adopted to address these challenges. Aim: The aim of this systematic review was to map published literature on health, climate change and sustainability by categorising papers according to their focus on effects, strategy and actions, and to provide a thematic analysis of their content. Methods: Systematic searches were conducted via a range of healthcare related databases i.e. Pubmed, Medline, CINAHL, AMED, ASSIA, IBSS and ISI Web of Knowledge. Searches focussed upon papers published in English between 1998 and 2008. Retrieved papers were studied by the authors in order to inform the thematic analysis of their content. Results: A total of 114 publications were retrieved, of which 36 met the inclusion criteria for the systematic review. These 36 publications were categorised and are discussed according to their focus on: effects/impacts, strategy/policy, action/examples. Conclusions: A number of papers report the potential health effects of climate change while others report policies and strategies to tackle these effects. However there is an urgent need to identify and report on the implementation of strategies to mitigate and adapt to these challenges and to publish real examples of actions. Actions that are taken need to be evidence/policy based, and implementations monitored, evaluated and published. PMID:20508757

  6. Integrating Language and Literature: Teaching Textual Analysis with Input and Output Activities and an Input-to-Output Approach

    ERIC Educational Resources Information Center

    Weber-Feve, Stacey

    2009-01-01

    The Modern Language Association report and "Profession" issue from summer 2007 (Geisler et al., 2007) are highly indicative of the increasingly debated concerns in the profession surrounding (1) the traditional division of foreign language curriculum between "language" and "literature" and (2) the instruction of textual analysis (or practice of…

  7. Acquisition and Generalization of Word Decoding in Students with Reading Disabilities by Integrating Vowel Pattern Analysis and Children's Literature

    ERIC Educational Resources Information Center

    Cohen, E. Judith; Brady, Michael P.

    2011-01-01

    This study investigated the effects of a reading intervention that integrated vowel pattern analysis and children's literature on the word decoding performance of second graders with reading disabilities. The intervention evaluated students' abilities to decode a set of training words using 3 common vowel patterns (syllable types), in isolation…

  8. ADHD and Achievement: Meta-Analysis of the Child, Adolescent, and Adult Literatures and a Concomitant Study with College Students

    ERIC Educational Resources Information Center

    Frazier, Thomas W.; Youngstrom, Eric A.; Glutting, Joseph J.; Watkins, Marley W.

    2007-01-01

    This article presents results from two interrelated studies. The first study conducted a meta-analysis of the published literature since 1990 to determine the magnitude of achievement problems associated with attention-deficit/hyperactivity disorder (ADHD). Effect sizes were significantly different between participants with and without ADHD…

  9. Therapies for children with cerebral palsy: A Web of Science-based literature analysis

    PubMed Central

    Mu, Yaping; Li, Na; Guan, Lijun; Wang, Chunnan; Shang, Shuyun; Wang, Yan

    2012-01-01

    Netherlands, the United States of America, and Australia; those publishing on constraint-induced movement therapy are mostly in Australia and the United States of America; and those publishing on acupuncture are mostly in China, Sweden and the United States of America. CONCLUSION: Analysis of literature and research trends indicated that there was no one specific therapy to cure cerebral palsy. Further studies are still necessary. PMID:25368640

  10. Breast Microsurgery in Plastic Surgery Literature: A 21-Year Analysis of Publication Trends.

    PubMed

    Daly, Lauren Tracy; Mowlds, Donald; Brodsky, Merrick A; Abrouk, Michael; Gandy, Jessica R; Wirth, Garrett A

    2016-05-01

    Introduction Microsurgical reconstruction of the breast represents an area of continual evolution, as new autologous flaps are introduced and principles are refined. This progression can be demonstrated by bibliometric analysis of the scientific literature. Methods The top 10 plastic surgery journals were determined by impact factor (IF). Each issue of every journal from 1993 to 2013 was accessed directly, and all articles discussing microsurgery on the female breast were classified by authors' geographic location, study design, and level of evidence (LOE, I-V). The productivity index and productivity share of each geographic region was calculated based on number of articles published and IF. Results A total of 706 breast microsurgery articles were analyzed. There was a significant increase in microsurgical breast research (p < 0.01), with an average 33.6 ± 31.1 articles per year and a mean increase of 4.4 articles per year. Most research was of lower LOE, with level I constituting 0.14% and level II constituting 5.21% of all articles. United States contributed the most research with 336.4 articles, followed by Western Europe with 242.2. However, Western Europe experienced the greatest increase in productivity share, with + 0.50 ± 0.29 growth, while United States demonstrated the greatest decrease in productivity share with - 1.23 ± 0.31 growth. Among autologous flaps, transverse rectus abdominis muscle research had the greatest yearly publication volume until 2002, when overtaken by deep inferior epigastric perforator flap research. Conclusion Over the 21-year study period, the United States not only contributed the greatest volume of research on female breast microsurgery but also demonstrated the greatest decline in research productivity. Efforts should be made to increase the LOE in breast microsurgery research. PMID:26645157