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Sample records for living organisms produce

  1. Cryopreservation of Living Organs

    NASA Astrophysics Data System (ADS)

    Tanasawa, Ichiro; Nagata, Shinichi; Kimura, Naohiro

    Cryopreservation is considered to be the most promising way of preserving living organs or tissues for a long period of time without casuing any damage to their biological functions. However, cryopreservation has been succeeded only for simple and small-size tissues such as spermatozoon, ovum, erythrocyte, bone marrow and cornea. Cryopreservation of more complex and large-scale organs are not yet succssful. The authors have attempted to establish a technique for cryopreservation of larger living organs. An experiment was carried out using daphnia (water flea). The optimum rates of freezing and thawing were determined together with the optimum selection of cryoprotectant. High recovery rate was achieved under these conditions.

  2. Microholography of Living Organisms.

    ERIC Educational Resources Information Center

    Solem, Johndale C.; Baldwin, George C.

    1982-01-01

    By using intense pulsed coherent x-ray sources it will be possible to obtain magnified three-dimensional images of living elementary biological structures at precisely defined instants. Discussed are sources/geometrics for x-ray holography, x-radiation interactions, factors affecting resolution, recording the hologram, high-intensity holography,…

  3. Microholography of Living Organisms

    NASA Astrophysics Data System (ADS)

    Solem, Johndale C.; Baldwin, George C.

    1982-10-01

    By using intense pulsed coherent x-ray sources that are currently under development, it will be possible to obtain magnified three-dimensional images of elementary biological structures in the living state at precisely defined instants. For optimum contrast, sensitivity, and resolution, the hologram should be made with x-rays tuned to a resonance of nitrogen near 0.3 nanometer. Resolution will then be limited mainly by the hydrodynamic expansion that occurs while the necessary number of photons is being registered. Problems of technique are also briefly discussed.

  4. Live pigs produced from genome edited zygotes.

    PubMed

    Lillico, Simon G; Proudfoot, Chris; Carlson, Daniel F; Stverakova, Dana; Neil, Claire; Blain, Carol; King, Tim J; Ritchie, William A; Tan, Wenfang; Mileham, Alan J; McLaren, David G; Fahrenkrug, Scott C; Whitelaw, C Bruce A

    2013-01-01

    Transcription activator-like effector nuclease (TALEN) and zinc finger nuclease (ZFN) genome editing technology enables site directed engineering of the genome. Here we demonstrate for the first time that both TALEN and ZFN injected directly into pig zygotes can produce live genome edited pigs. Monoallelic as well as heterozygous and homozygous biallelic events were identified, significantly broadening the use of genome editor technology in livestock by enabling gene knockout in zygotes from any chosen mating. PMID:24108318

  5. Microorganisms for producing organic acids

    SciTech Connect

    Pfleger, Brian Frederick; Begemann, Matthew Brett

    2014-09-30

    Organic acid-producing microorganisms and methods of using same. The organic acid-producing microorganisms comprise modifications that reduce or ablate AcsA activity or AcsA homolog activity. The modifications increase tolerance of the microorganisms to such organic acids as 3-hydroxypropionic acid, acrylic acid, propionic acid, lactic acid, and others. Further modifications to the microorganisms increase production of such organic acids as 3-hydroxypropionic acid, lactate, and others. Methods of producing such organic acids as 3-hydroxypropionic acid, lactate, and others with the modified microorganisms are provided. Methods of using acsA or homologs thereof as counter-selectable markers are also provided.

  6. Ecotoxicology: Nanoparticle Reactivity and Living Organisms

    NASA Astrophysics Data System (ADS)

    Auffan, Mélanie; Flahaut, Emmanuel; Thill, Antoine; Mouchet, Florence; Carrière, Marie; Gauthier, Laury; Achouak, Wafa; Rose, Jérôme; Wiesner, Mark R.; Bottero, Jean-Yves

    Nanotechnology is a major source of innovation with important economic consequences. However, the potential risks for health and the environment have raised questions on national, European, and international levels. Past experience of sanitary, technological, and environmental risks has shown that it is not a good policy to attempt to deal with them after the fact. It is thus crucial to assess the risks as early on as possible. A particular problem is the potential dissmination of mass produced man-made nanoparticles into the environment [1, 2]. Nanomaterials represent a particular hazard for humans due to their ability to penetrate and subsequently damage living organisms [3]. Indeed, the data available at the present time shows that some nanomaterials, especially insoluble particles, can cross biological barriers and distribute themselves within living organisms.

  7. Producing a Live HDTV Program from Space

    NASA Technical Reports Server (NTRS)

    Grubbs, Rodney; Fontanot, Carlos; Hames, Kevin

    2007-01-01

    By the year 2000, NASA had flown HDTV camcorders on three Space Shuttle missions: STS-95, STS-93 and STS-99. All three flights of these camcorders were accomplished with cooperation from the Japanese space agency (then known as NASDA and now known as JAXA). The cameras were large broadcast-standard cameras provided by NASDA and flight certified by both NASA and NASDA. The high-definition video shot during these missions was spectacular. Waiting for the return of the tapes to Earth emphasized the next logical step: finding a way to downlink the HDTV live from space. Both the Space Shuttle and the International Space Station (ISS) programs were interested in live HDTV from space, but neither had the resources to fully fund the technology. Technically, downlinking from the ISS was the most effective approach. Only when the Japanese broadcaster NHK and the Japanese space agency expressed interest in covering a Japanese astronaut's journey to the ISS did the project become possible. Together, JAXA and NHK offered equipment, technology, and funding toward the project. In return, NHK asked for a live HDTV downlink during one of its broadcast programs. NASA and the ISS Program sought a US partner to broadcast a live HDTV program and approached the Discovery Channel. The Discovery Channel had proposed a live HDTV project in response to NASA's previous call for offers. The Discovery Channel agreed to provide addItional resources. With the final partner in place, the project was under way. Engineers in the Avionics Systems Division at NASA's Johnson Space Center (JSC) had already studied the various options for downlinking HDTV from the ISS. They concluded that the easiest way was to compress the HDTV so that the resulting data stream would "look" like a payload data stream. The flight system would consist of a professional HDTV camcorder with live HD-SDI output, an HDTV MPEG-2 encoder, and a packetizer/protocol converter.

  8. Storing data encoded DNA in living organisms

    DOEpatents

    Wong; Pak C. , Wong; Kwong K. , Foote; Harlan P.

    2006-06-06

    Current technologies allow the generation of artificial DNA molecules and/or the ability to alter the DNA sequences of existing DNA molecules. With a careful coding scheme and arrangement, it is possible to encode important information as an artificial DNA strand and store it in a living host safely and permanently. This inventive technology can be used to identify origins and protect R&D investments. It can also be used in environmental research to track generations of organisms and observe the ecological impact of pollutants. Today, there are microorganisms that can survive under extreme conditions. As well, it is advantageous to consider multicellular organisms as hosts for stored information. These living organisms can provide as memory housing and protection for stored data or information. The present invention provides well for data storage in a living organism wherein at least one DNA sequence is encoded to represent data and incorporated into a living organism.

  9. Methicillin-resistant Staphylococcus aureus and extended-spectrum and AmpC ?-lactamase-producing Escherichia coli in broilers and in people living and/or working on organic broiler farms.

    PubMed

    Huijbers, Patricia M C; van Hoek, Angela H A M; Graat, Elisabeth A M; Haenen, Anja P J; Florijn, Alice; Hengeveld, Paul D; van Duijkeren, Engeline

    2015-03-23

    The aim of this study was to estimate the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) and extended-spectrum and AmpC ?-lactamase (ESBL/AmpC)-producing Escherichia coli among broilers, and humans living and/or working on organic broiler farms; further characterise isolates; and compare these results with those from conventional farms. In the Netherlands, only 9 certified organic broiler farms were present. On 8 of these farms, 60 throat swabs and 20 cloacal swabs were taken per farm for MRSA and ESBL/AmpC-E. coli detection, respectively, at an average age of both 34 (T1) and 68 (T2) days. Faecal swabs and questionnaires were returned by 27 out of 36 humans. For selected ESBL/AmpC-producing E. coli isolates, phylogenetic groups, ?-lactamase genes, plasmid families, and sequence types were determined. MRSA was not detected in broiler and human samples. ESBL/AmpC-producing E. coli were isolated from broilers on 7/8 farms at T1 and on all farms at T2. Furthermore, 3 farmers at T1, and 2 farmers and 1 family member at T2 were positive. Genes found in broilers and humans were almost exclusively blaCTX-M-1 and blaCMY-2. Given the high overall human ESBL/AmpC-prevalence (18.5%), which is similar to conventional farms, contact with live broilers is assumed a risk factor for carriage. Farm and sample-level prevalence at T1 are consistent with those from conventional farms. At T2, just before slaughter, sample-level prevalence of ESBL/AmpC-E. coli appears to have decreased (94.3% vs. 80%), which could have important consequences for contamination of retail meat. PMID:25582613

  10. Ion produced cometary organic crust

    NASA Technical Reports Server (NTRS)

    Baratta, G. Antonio; Strazzulla, G.

    1992-01-01

    For several years many experimental results have been obtained on the chemical and physical changes induced by ion and electron irradiation of materials with a view to their Astrophysical relevance. Among the studied effects, one of particular interest is the formation of an organic refractory residue left over after ion irradiation and warming-up at room temperature. We call this residue IPHAC (ion produced hydrogenated amorphous carbon). Although 'in situ' infrared spectroscopy points out the formation of new molecular species during bombardment at low temperature, it is not clear if IPHAC is already formed or if its formation is triggered by temperature increase during warming-up of the irradiated target. Since Raman Spectroscopy is a technique particularly suitable for the analysis of carbonaceous materials, we have thought and build-up an experimental apparatus to obtain Raman Spectra of frozen hydrocarbons during ion irradiation. The present experimental results point out clearly to the formation of IPHAC already at low T and low energy deposition (approximately equal to a few eV/C-atom).

  11. Living Organisms for the Elementary Classroom.

    ERIC Educational Resources Information Center

    Hampton, Carolyn H.; Hampton, Carol D.

    This publication was prepared for elementary teachers and other local personnel responsible for providing, maintaining and using living organisms to enhance elementary science programs. The manual contains a foreword, general information, and an appendix. It gives information concerning equipment and supplies, establishing and maintaining an…

  12. Vitamin C content of organically grown produce

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Organically grown produce is the fastest growing sector of fresh market sales in the U.S. While accounting for only 3% of total produce sales, it is growing by 20% per year. There has been much debate over the relative health merits of organically grown fruits and vegetables. Most consumers believ...

  13. [Distant mental influence on living organisms].

    PubMed

    Bonilla, Ernesto

    2013-12-01

    This article reviews studies of distant mental influence on living organisms, including mental suggestions of sleeping and awakening, mental influence at long distances, mental interactions with remote biological systems, mental effects on physiological activity and the sense of being stared at. Significant effects of distant mental influence have been shown in several randomized controlled trials in humans, animals, plants, bacteria and cells in the laboratory. Although distant mental influence on living organisms appears to contradict our ordinary sense of reality and the laws defined by conventional science, several hypotheses have been proposed to explain the observed effects; they include skeptical, signal transfer, field, multidimensional space/time and quantum mechanics hypotheses. In conclusion, as the progress of physics continues to expand our comprehension of reality, a rational explanation for distant mind-matter interaction will emerge and, as history has shown repeatedly, the supernatural events will evolve into paranormal and then, into normal ones, as the scientific frontiers expand. PMID:24502184

  14. Finding extraterrestrial organisms living on thermosynthesis.

    PubMed

    Muller, Anthonie W J

    2003-01-01

    During thermal cycling, organisms could live on thermosynthesis, a theoretical mechanism applicable to the origin of life and the early evolution of biological energy conversion. All extraterrestrial ice may be a repository for frozen dead or dormant organisms from earlier stages of evolution. In the presence of a thermal gradient within the ice, organisms might still be harvesting energy from thermosynthesis. Possible habitats for thermosynthesizers can be found throughout the Solar System, particularly in the cold traps on Mercury and the Moon, convecting waters on Mars, the oceans on moons in the outer Solar System, and smaller bodies rotating in the sunlight such as cosmic dust, meteorites, asteroids, and comets. A general strategy for detecting thermosynthetic organisms on Earth is offered, and highlights of current and upcoming robotic exploratory missions relevant to the detection of thermosynthesis are reviewed. PMID:14678664

  15. Form, function, and evolution of living organisms.

    PubMed

    Banavar, Jayanth R; Cooke, Todd J; Rinaldo, Andrea; Maritan, Amos

    2014-03-01

    Despite the vast diversity of sizes and shapes of living organisms, life's organization across scales exhibits remarkable commonalities, most notably through the approximate validity of Kleiber's law, the power law scaling of metabolic rates with the mass of an organism. Here, we present a derivation of Kleiber's law that is independent of the specificity of the myriads of organism species. Specifically, we account for the distinct geometries of trees and mammals as well as deviations from the pure power law behavior of Kleiber's law, and predict the possibility of life forms with geometries intermediate between trees and mammals. We also make several predictions in excellent accord with empirical data. Our theory relates the separate evolutionary histories of plants and animals through the fundamental physics underlying their distinct overall forms and physiologies. PMID:24550479

  16. Self-organized criticality in living systems

    NASA Astrophysics Data System (ADS)

    Adami, C.

    1995-02-01

    We suggest that ensembles of self-replicating entities such as biological systems naturally evolve to a self-organized critical state in which fluctuations, as well as waiting times between phase transitions (“epochs”), are distributed according to a {1}/{f ?} power law. Such distributions can explain observed frequency distributions in extinction events as well as fractal population structures, and support the punctuated equilibrium picture of evolution. We demonstrate these concepts by analyzing a population of coexisting self-replicating strings (segments of computer code) subject to mutation and survival of the fittest, which constitutes an artificial living system.

  17. Classification of organisms: living and fossil.

    PubMed

    Anderson, C

    1993-01-01

    The classification advanced herein provides a framework to which any organism can be readily placed and offers comprehensive coverage of the entire biological spectrum. The viruses are incorporated as a kingdom of organisms and a rationale advanced for a 6-kingdom system. Many seldom-classified fossil organisms are included, with a significant number of them classified at an advanced level. Individual phyla are recognized for the fossil genera Tribrachidium, Amiskwia, Dinomischus, Anomalocaris, Tullimonstrum, Hallucigenia, Opabinia and Pikaia. Other seldom-recognized phyla include viruses, conularids, loriciferans, tentaculites, hyoliths, scleritophores, myzostomans, acorn worms, conodonts, monoblastozoans and volborthellids. The notion that failures (geologically) cannot be phyla is rejected. A system of kingdom-related and rank-related suffixes is incorporated with the flexible opportunity, if deemed necessary, to advance or reduce taxa by re-suffixing. Other features of the complete classification of Anderson (Classification of Organisms: Living and Fossil, Golden Crowns Press, Lancaster, OH, 1992) include the elimination of duplicate taxa, incorporation of geologic ranges and number of species for many groups, and extensive usage of common names, which are completely indexed. PMID:8155858

  18. Toward quantum superposition of living organisms

    NASA Astrophysics Data System (ADS)

    Romero-Isart, Oriol; Juan, Mathieu L.; Quidant, Romain; Cirac, J. Ignacio

    2010-03-01

    The most striking feature of quantum mechanics is the existence of superposition states, where an object appears to be in different situations at the same time. The existence of such states has been previously tested with small objects, such as atoms, ions, electrons and photons (Zoller et al 2005 Eur. Phys. J. D 36 203-28), and even with molecules (Arndt et al 1999 Nature 401 680-2). More recently, it has been shown that it is possible to create superpositions of collections of photons (Deléglise et al 2008 Nature 455 510-14), atoms (Hammerer et al 2008 arXiv:0807.3358) or Cooper pairs (Friedman et al 2000 Nature 406 43-6). Very recent progress in optomechanical systems may soon allow us to create superpositions of even larger objects, such as micro-sized mirrors or cantilevers (Marshall et al 2003 Phys. Rev. Lett. 91 130401; Kippenberg and Vahala 2008 Science 321 1172-6 Marquardt and Girvin 2009 Physics 2 40; Favero and Karrai 2009 Nature Photon. 3 201-5), and thus to test quantum mechanical phenomena at larger scales. Here we propose a method to cool down and create quantum superpositions of the motion of sub-wavelength, arbitrarily shaped dielectric objects trapped inside a high-finesse cavity at a very low pressure. Our method is ideally suited for the smallest living organisms, such as viruses, which survive under low-vacuum pressures (Rothschild and Mancinelli 2001 Nature 406 1092-101) and optically behave as dielectric objects (Ashkin and Dziedzic 1987 Science 235 1517-20). This opens up the possibility of testing the quantum nature of living organisms by creating quantum superposition states in very much the same spirit as the original Schrödinger's cat 'gedanken' paradigm (Schrödinger 1935 Naturwissenschaften 23 807-12, 823-8, 844-9). We anticipate that our paper will be a starting point for experimentally addressing fundamental questions, such as the role of life and consciousness in quantum mechanics.

  19. Characterization of Soluble Organics in Produced Water

    SciTech Connect

    Bostick, D.T.

    2002-01-16

    Soluble organics in produced water and refinery effluents represent treatment problems for the petroleum industry. Neither the chemistry involved in the production of soluble organics nor the impact of these chemicals on total effluent toxicity is well understood. The U.S. Department of Energy provides funding for Oak Ridge National Laboratory (ORNL) to support a collaborative project with Shell, Chevron, Phillips, and Statoil entitled ''Petroleum and Environmental Research Forum project (PERF 9844: Manage Water-Soluble Organics in Produced Water''). The goal of this project, which involves characterization and evaluation of these water-soluble compounds, is aimed at reducing the future production of such contaminants. To determine the effect that various drilling conditions might have on water-soluble organics (WSO) content in produced water, a simulated brine water containing the principal inorganic components normally found in Gulf of Mexico (GOM) brine sources was prepared. The GOM simulant was then contacted with as-received crude oil from a deep well site to study the effects of water cut, produced-water pH, salinity, pressure, temperature, and crude oil sources on the type and content of the WSO in produced water. The identities of individual semivolatile organic compounds (SVOCs) were determined in all as-received crude and actual produced water samples using standard USEPA Method (8270C) protocol. These analyses were supplemented with the more general measurements of total petroleum hydrocarbon (TPH) content in the gas (C{sub 6}-C{sub 10}), diesel (C{sub 10}-C{sub 20}), and oil (C{sub 20}-C{sub 28}) carbon ranges as determined by both gas chromatographic (GC) and infrared (IR) analyses. An open liquid chromatographic procedure was also used to differentiate the saturated hydrocarbon, aromatic hydrocarbon, and polar components within the extractable TPH. Inorganic constituents in the produced water were analyzed by ion-selective electrodes and inductively coupled plasma (ICP)-atomic emission spectrometry (AES). The WSO found in produced water samples was primarily polar in nature and distributed between the low and midrange carbon ranges. Typical levels of total extractable material (TEM) was about 20 mg/L; that associated with the aromatic fraction was present at 0.2 mg/L and that in the saturated hydrocarbon fraction was present at less than 0.02 mg/L. Formic, acetic, and propionic acids were also found in the produced water, occurring at a total concentration of 30 mg/L. It was estimated that the presence of 30 mg/L organic acids would artificially overstate TEM content by 2 mg/L. Of the five tested parameters, the factor that most controlled the total WSO in produced water was that of aqueous phase pH. Beyond a value of pH7 significant quantities of C{sub 10}-C{sub 20} range material become markedly soluble as they deprotonate in a basic aqueous phase. Both the absolute and relative volumes of GOM brine and crude additionally affected total WSO. Produced water appeared to reach a saturation level of WSO at a.50% water/oil ratio. Pressure slightly enhanced WSO by increasing the relative quantity of C{sub 6}-C{sub 10} range material. Temperature primarily altered the relative ratio of carbon ranges within the WSO without significantly elevating the total WSO in the GOM brine. Salinity had the least affect on the chemical character or the carbon size of WSO in produced water.

  20. 7 CFR 1205.341 - Certification of cotton producer organization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 10 2013-01-01 2013-01-01 false Certification of cotton producer organization. 1205... COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Certification of Cotton Producer Organization § 1205.341 Certification of cotton producer organization. Any cotton producer organization...

  1. 7 CFR 1205.341 - Certification of cotton producer organization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 10 2014-01-01 2014-01-01 false Certification of cotton producer organization. 1205... COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Certification of Cotton Producer Organization § 1205.341 Certification of cotton producer organization. Any cotton producer organization...

  2. 7 CFR 1205.341 - Certification of cotton producer organization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Certification of cotton producer organization. 1205... COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Certification of Cotton Producer Organization § 1205.341 Certification of cotton producer organization. Any cotton producer organization...

  3. 7 CFR 1205.341 - Certification of cotton producer organization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 10 2012-01-01 2012-01-01 false Certification of cotton producer organization. 1205... COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Certification of Cotton Producer Organization § 1205.341 Certification of cotton producer organization. Any cotton producer organization...

  4. 7 CFR 1205.341 - Certification of cotton producer organization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 10 2011-01-01 2011-01-01 false Certification of cotton producer organization. 1205... COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Certification of Cotton Producer Organization § 1205.341 Certification of cotton producer organization. Any cotton producer organization...

  5. Synthetic organisms and living machines : Positioning the products of synthetic biology at the borderline between living and non-living matter.

    PubMed

    Deplazes, Anna; Huppenbauer, Markus

    2009-12-01

    The difference between a non-living machine such as a vacuum cleaner and a living organism as a lion seems to be obvious. The two types of entities differ in their material consistence, their origin, their development and their purpose. This apparently clear-cut borderline has previously been challenged by fictitious ideas of "artificial organism" and "living machines" as well as by progress in technology and breeding. The emergence of novel technologies such as artificial life, nanobiotechnology and synthetic biology are definitely blurring the boundary between our understanding of living and non-living matter. This essay discusses where, at the borderline between living and non-living matter, we can position the future products of synthetic biology that belong to the two hybrid entities "synthetic organisms" and "living machines" and how the approaching realization of such hybrid entities affects our understanding of organisms and machines. For this purpose we focus on the description of three different types of synthetic biology products and the aims assigned to their realization: (1) synthetic minimal cells aimed at by protocell synthetic biology, (2) chassis organisms strived for by synthetic genomics and (3) genetically engineered machines produced by bioengineering. We argue that in the case of synthetic biology the purpose is more decisive for the categorization of a product as an organism or a machine than its origin and development. This has certain ethical implications because the definition of an entity as machine seems to allow bypassing the discussion about the assignment and evaluation of instrumental and intrinsic values, which can be raised in the case of organisms. PMID:19816800

  6. Order and chaos in living organisms

    NASA Astrophysics Data System (ADS)

    Anischenko, Vadim S.; Medvedev, Boris A.

    1993-06-01

    One of the main means of studying the essence of the laws of process dynamics in living systems is mathematical modelling. Construction of adequate mathematical models is not quite simple a problem and demands joint efforts of physicists, mathematicians, medical men, and biologists. Models can be of different levels of complexity. I would like to confine this discussion to only one of the dynamical processes description methods, that is, by means of ordinary differential equations. At the same time we will not consider spatiatemporal (wave) processes that are the subject for a separate discussion.

  7. 7 CFR 927.103 - Organically produced pears.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 8 2010-01-01 2010-01-01 false Organically produced pears. 927.103 Section 927.103... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE PEARS GROWN IN OREGON AND WASHINGTON Rules and Regulations Definitions § 927.103 Organically produced pears. Organically produced...

  8. 7 CFR 927.103 - Organically produced pears.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 8 2012-01-01 2012-01-01 false Organically produced pears. 927.103 Section 927.103... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE PEARS GROWN IN OREGON AND WASHINGTON Rules and Regulations Definitions § 927.103 Organically produced pears. Organically produced...

  9. 7 CFR 927.103 - Organically produced pears.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 8 2013-01-01 2013-01-01 false Organically produced pears. 927.103 Section 927.103... AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE PEARS GROWN IN OREGON AND WASHINGTON Rules and Regulations Definitions § 927.103 Organically produced pears. Organically produced...

  10. 7 CFR 927.103 - Organically produced pears.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 8 2011-01-01 2011-01-01 false Organically produced pears. 927.103 Section 927.103... Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE PEARS GROWN IN OREGON AND WASHINGTON Rules and Regulations Definitions § 927.103 Organically produced pears. Organically produced...

  11. 7 CFR 927.103 - Organically produced pears.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 8 2014-01-01 2014-01-01 false Organically produced pears. 927.103 Section 927.103... AGREEMENTS AND ORDERS; FRUITS, VEGETABLES, NUTS), DEPARTMENT OF AGRICULTURE PEARS GROWN IN OREGON AND WASHINGTON Rules and Regulations Definitions § 927.103 Organically produced pears. Organically produced...

  12. [Legal questions in organ transplantation from living donors].

    PubMed

    Koch, H G

    1999-01-01

    From the perspective of the German legal system it is clear that the donation of organs by living donors should be the exception, but cadaver donors the rule. Nevertheless, the legislature has deemed it necessary to regulate the organ donation of living donors. Without a great lot of political debate requirements have been established for these donors and criminal provisions created prohibiting the dealing with human organs. This paper will first address the question on how the current legislation came about and whether a statutory rule was even necessary. An in-depth analysis of the statute will follow in which open questions and ambiguities of the text will be explained. PMID:10488542

  13. X-ray microscopy of live biological micro-organisms

    NASA Astrophysics Data System (ADS)

    Raja Al-Ani, Ma'an Nassar

    Real-time, compact x-ray microscopy has the potential to benefit many scientific fields, including microbiology, pharmacology, organic chemistry, and physics. Single frame x-ray micro-radiography, produced by a compact, solid-state laser plasma source, allows scientists to use x-ray emission for elemental analysis, and to observe biological specimens in their natural state. In this study, x-ray images of mouse kidney tissue, live bacteria, Pseudomonas aeruginosa and Burkholderia cepacia, and the bacteria's interaction with the antibiotic gentamicin, are examined using x-ray microscopy. For the purposes of comparing between confocal microscopy and x-ray microscopy, we introduced to our work the technique of gold labeling. Indirect immunofluorescence staining and immuno-gold labeling were applied on human lymphocytes and human tumor cells. Differential interference contrast microscopy (DIC) showed the lymphocyte body and nucleus, as did x-ray microscopy. However, the high resolution of x-ray microscopy allows us to differentiate between the gold particles bound to the antibodies and the free gold. A compact, tabletop Nd: glass laser is used in this study to produce x-rays from an Yttrium target. An atomic force microscope is used to scan the x-ray images from the developed photo-resist. The use of compact, tabletop laser plasma sources, in conjunction with x-ray microscopy, is a new technique that has great potential as a flexible, user-friendly scientific research tool.

  14. Psychosocial assessment of living organ donors: clinical and ethical considerations.

    PubMed

    Olbrisch, M E; Benedict, S M; Haller, D L; Levenson, J L

    2001-03-01

    This article outlines psychosocial and ethical issues to be considered when evaluating potential living organ donors. Six types of living donors are described: genetically related, emotionally related, "Good Samaritan" (both directed and nondirected), vendors, and organ exchangers. The primary domains to be assessed in the psychosocial evaluation are informed consent, motivation for donating and the decision-making process, adequacy of support (financial and social), behavioral and psychological health, and the donor-recipient relationship. Obstacles to the evaluation process include impression management, overt deception, minimization of behavioral risk factors, and cultural and language differences between the donor and the evaluator. Ethical concerns, such as the right to donate, donor autonomy, freedom from coercion, nonmaleficence and beneficence in donor selection, conflicts of interest, "reasonable" risks to donors, and recipient decision making are also explored. To fully evaluate living organ donation, studying psychosocial as well as medical outcomes is crucial. PMID:11357556

  15. Biopsychronology: live confocal imaging of biopsies to assess organ function.

    PubMed

    Ashraf, Muhammad Imtiaz; Fries, Dietmar; Streif, Werner; Aigner, Felix; Hengster, Paul; Troppmair, Jakob; Hermann, Martin

    2014-08-01

    Prolonged ischemia (I) times caused by organ procurement and transport are main contributors to a decrease in organ function, which is further enhanced during reperfusion (R). This combined damage, referred to as ischemia-reperfusion injury (IRI), is a main contributor to delayed graft function, which leads to costly and lengthy follow-up treatments or even organ loss. Methods to monitor the status of a graft prior to transplantation are therefore highly desirable to optimize the clinical outcome. Here, we propose the use of fine needle biopsies, which are analyzed by real-time live confocal microscopy. Such a combination provides information about the functional and structural integrity of an organ within a few minutes. To confirm the feasibility of this approach, we obtained fine needle biopsies from rodent kidneys and exposed them to various stress conditions. Following the addition of a range of live stains, biopsies were monitored for mitochondrial function, cell viability, and tissue integrity using confocal live cell imaging. Our data demonstrate that this procedure requires minimal time for sample preparation and data acquisition and is well suitable to record organ damage resulting from unphysiological stress. PMID:24750326

  16. D-Amino Acids in Living Higher Organisms

    NASA Astrophysics Data System (ADS)

    Fujii, Noriko

    2002-04-01

    The homochirality of biological amino acids (L-amino acids) and of the RNA/DNA backbone (D-ribose) might have become established before the origin of life. It has been considered that D-amino acids and L-sugars were eliminated on the primitive Earth. Therefore, the presence and function of D-amino acids in living organisms have not been studied except for D-amino acids in the cell walls of microorganisms. However, D-amino acids were recently found in various living higher organisms in the form of free amino acids, peptides, and proteins. Free D-aspartate and D-serine are present and may have important physiological functions in mammals. D-amino acids in peptides are well known as opioid peptides and neuropeptides. In protein, D-aspartate residues increase during aging. This review deals with recent advances in the study of D-amino acids in higher organisms.

  17. Living and deceased organ donation should be financially neutral acts.

    PubMed

    Delmonico, F L; Martin, D; Domínguez-Gil, B; Muller, E; Jha, V; Levin, A; Danovitch, G M; Capron, A M

    2015-05-01

    The supply of organs—particularly kidneys—donated by living and deceased donors falls short of the number of patients added annually to transplant waiting lists in the United States. To remedy this problem, a number of prominent physicians, ethicists, economists and others have mounted a campaign to suspend the prohibitions in the National Organ Transplant Act of 1984 (NOTA) on the buying and selling of organs. The argument that providing financial benefits would incentivize enough people to part with a kidney (or a portion of a liver) to clear the waiting lists is flawed. This commentary marshals arguments against the claim that the shortage of donor organs would best be overcome by providing financial incentives for donation. We can increase the number of organs available for transplantation by removing all financial disincentives that deter unpaid living or deceased kidney donation. These disincentives include a range of burdens, such as the costs of travel and lodging for medical evaluation and surgery, lost wages, and the expense of dependent care during the period of organ removal and recuperation. Organ donation should remain an act that is financially neutral for donors, neither imposing financial burdens nor enriching them monetarily. PMID:25833381

  18. Active organization of membrane constituents in living cells.

    PubMed

    Rao, Madan; Mayor, Satyajit

    2014-08-01

    A search for organizing principles underlying molecular patterning at the cell surface and its regulation over different scales is necessary. This is important for understanding how the cell builds membrane bound organelles that emanate from it and for how the cell interacts with its physical and chemical milieu. This requires a broad framework to rationalize the mass of accumulated data about the spatial localization and dynamics of its constituents, and their physical and chemical environment. Lateral heterogeneities in the organization of membrane components of a living cell appear to be a hallmark of how a cell addresses sorting and signaling functions. Here we explore two classes of mechanisms of segregation of membrane components in the plasma membrane. We suggest that viewing the membrane as a passive, thermally equilibrated system is unlikely to provide an adequate framework to understand the mechanisms of membrane component segregation in vivo. Instead the surface of living cells behaves as an active membrane composite. PMID:24975942

  19. The impact ejection of living organisms into space

    NASA Technical Reports Server (NTRS)

    Melosh, H. J.

    1985-01-01

    The possibility of natural processes to blast living organisms into space was examined. It is suggested that rocks ejected from the Earth by a giant meteorite or comet impact can carry microorganisms into space. Such microscopic Earth life would have an opportunity to colonize the other planets if it can survive the rigors of space until it falls into the atmosphere of a hospitable planet.

  20. Simulating living organisms with populations of point vortices

    SciTech Connect

    Schmieder, R.W.

    1995-07-01

    The author has found that time-averaged images of small populations of point vortices can exhibit motions suggestive of the behavior of individual organisms. As an example, the author shows that collections of point vortices confined in a box and subjected to heating can generate patterns that are broadly similar to interspecies defense in certain sea anemones. It is speculated that other simple dynamical systems can be found to produce similar complex organism-like behavior.

  1. [The Swiss Organ Living Donor Health Registry (SOL-DHR)].

    PubMed

    Thiel, G T; Nolte, C; Tsinalis, D

    2005-07-01

    The Swiss Organ Living Donor Health Registry (SOL-DHR) started in April 1993. The purpose was the prospective and sequential follow up of donors long-term health. Between 1993 and January 2005 737 Living Kidney donations were registered and followed. Two thirds of donors were female and two thirds of recipients male. The three most common relations were life-partners, parents and siblings (approximately 30% each). 10% of donors could not be followed since living far abroad and 5% were lost due to missing current address after moving. 9 donors died (4 malignancies, 2 traffic accidents, 1 myocardial infarction, 1 stroke and 1 suicide), non due to kidney donation. Perioperative complications were age dependent, ranging from 17% in donors below the age of 40 year and 46% in donors older than 70 years. The longterm complications were divided in surgical, medical and psychological ones. The most common surgical long-term complications were pain (cicatrice, back, abdomen) and hernias. The major medical complications were hypertension (35% at seven years after donation) and rising rate of Albuminuria (9% at seven years). Although hypertension was not higher than in an age matched Swiss control population, untreated hypertension was regarded as the higher risk for development of glomerulosclerosis than in people with two kidneys. No donor went into end stage renal failure. Using the SF-8-Test to quantify the psychological well-being the mean MCS (mental component summary) was 54.3 +/- 7.8 as compared to 52.9 +/- 7.7 in the age matched control population. MCS was low (< 40) in 6.2% and very low (< 25) in 2.2% of donors. 94.4 % of donors would donate again, while 4.3% would not (mostly women). The reasons not to donate again was mainly related to poor outcome of the kidney recipient, or long-lasting major pain or disappointment about medical handling before (not enough information, wrong advice) and after organ donation. The association of Swiss Living Organ Donors, where only kidney or liver donors can become a member, are organising self-help-groups for pain, psychological and financial problems (with health insurances). The organisation and financial support of SOL-DHR is briefly described. The waste majority of living kidney donors are very satisfied about the free care given by SOL-DHR. PMID:16075950

  2. Stability and Responsiveness in a Self-Organized Living Architecture

    PubMed Central

    Garnier, Simon; Murphy, Tucker; Lutz, Matthew; Hurme, Edward; Leblanc, Simon; Couzin, Iain D.

    2013-01-01

    Robustness and adaptability are central to the functioning of biological systems, from gene networks to animal societies. Yet the mechanisms by which living organisms achieve both stability to perturbations and sensitivity to input are poorly understood. Here, we present an integrated study of a living architecture in which army ants interconnect their bodies to span gaps. We demonstrate that these self-assembled bridges are a highly effective means of maintaining traffic flow over unpredictable terrain. The individual-level rules responsible depend only on locally-estimated traffic intensity and the number of neighbours to which ants are attached within the structure. We employ a parameterized computational model to reveal that bridges are tuned to be maximally stable in the face of regular, periodic fluctuations in traffic. However analysis of the model also suggests that interactions among ants give rise to feedback processes that result in bridges being highly responsive to sudden interruptions in traffic. Subsequent field experiments confirm this prediction and thus the dual nature of stability and flexibility in living bridges. Our study demonstrates the importance of robust and adaptive modular architecture to efficient traffic organisation and reveals general principles regarding the regulation of form in biological self-assemblies. PMID:23555219

  3. Living Organ Donation: An Ethical Evolution or Evolution of Ethics?

    PubMed Central

    Ghahramani, N.

    2010-01-01

    The disparity between available and needed organs is rapidly increasing, and the number of patients dying while still on the waiting list is growing exponentially. As a partial solution to this disparity, living unrelated transplantation is being performed more frequently, and some have proposed providing financial incentives to donors. The aim of this discussion is to illustrate that with an ever-increasing number of living unrelated transplantations, society and the transplant community should adopt a more active role in developing specific strategies to scrutinize the process. The current paper will also examine the viewpoint that medical ethics is not separable from the prevailing needs of society and involves a constant balancing of often opposing goods. Issues surrounding living unrelated donor transplantation illustrate ethics as a dynamically evolving field, which is often influenced by necessity and which evolves with progression of science and society. As part of this evolution, it is the collective responsibility of society and the transplant community to devise safeguards to guarantee adherence to basic principles of ethics and to avoid “situational ethics.” PMID:25013566

  4. Development of the National Living Donor Assistance Center: reducing financial disincentives to living organ donation

    PubMed Central

    Warren, Patricia H.; Gifford, Kimberly A.; Hong, Barry A.; Merion, Robert M.; Ojo, Akinlolu O.

    2015-01-01

    Over the years, the transplant community has worked to advance the care of living organ donors; however, barriers remain, including the nonmedical expenses incurred by living donors. A new center, funded by a grant from the Health Resources and Services Administration (HRSA), was established to operate a nationwide system to remove these financial disincentives. The HRSA grant was awarded to an academic institution and the daily operations are managed by a transplant professional society. Expenses are reimbursed prospectively for financially needy living donors. Combining the legislative authority and economic resources of the federal government, the research experience of an academic institution, and the management know-how of a professional society has proven to be successful. To date, the center has received 3918 applications submitted by 199 different transplant centers and receives about 80 applications per month. On average, a donor spends $2767 for their travel expenses to the transplant center. Of the 3918 applications that have been submitted, 1941 of those applicants (50%) have completed their donor surgery. PMID:24598569

  5. Living Organisms Coupling to Electromagnetic Radiation Below Thermal Noise

    NASA Astrophysics Data System (ADS)

    Stolc, Viktor; Freund, Friedemann

    2013-04-01

    Ultralow frequency (ULF) and extremely low frequency (ELF) electromagnetic (EM) radiation is part of the natural environment. Prior to major earthquakes the local ULF and global ELF radiation field is often markedly perturbed. This has detrimental effects on living organisms. We are studying the mechanism of these effects on the biochemical, cellular and organismal levels. The transfer of electrons along the Electron Transfer Chain (ETC) controls the universal reduction-oxidation reactions that are essential for fundamental biochemical processes in living cells. In order for these processes to work properly, the ETC has to maintain some form of synchronization, or coherence with all biochemical reactions in the living cells, including energy production, RNA transcription, and DNA replication. As a consequence of this synchronization, harmful chemical conflict between the reductive and the oxidative partial reactions can be minimized or avoided. At the same time we note that the synchronization allows for a transfer of energy, coherent or interfering, via coupling to the natural ambient EM field. Extremely weak high frequency EM fields, well below the thermal noise level, tuned in frequency to the electron spins of certain steps in the ETC, have already been shown to cause aberrant cell growth and disorientation among plants and animals with respect to the magnetic and gravity vectors. We investigate EM fields over a much wider frequency range, including ULF known to be generated deep in the Earth prior to major earthquakes locally, and ELF known to be fed by lightning discharges, traveling around the globe in the cavity formed between the Earth's surface and the ionosphere. This ULF/ELF radiation can control the timing of the biochemical redox cycle and thereby have a universal effect on physiology of organisms. The timing can even have a detrimental influence, via increased oxidative damage, on the DNA replication, which controls heredity.

  6. Characterization of short-lived intermediates produced during replication of baculovirus DNA.

    PubMed

    Mikhailov, Victor S; Rohrmann, George F

    2009-10-01

    In this report the short-lived DNA replication intermediates produced in both uninfected and Autographa californica multiple nucleopolyhedrovirus (AcMNPV) infected Spodoptera frugiperda cells were characterized. The methods used included pulse-labeling of DNA in permiabilized cells, treatment of nascent DNA with Mung bean nuclease, and electrophoresis in neutral and alkaline agarose gels. In contrast to uninfected cells that produced a population of small DNA fragments of about 200bp, a population of heterogeneous fragments of up to 5kb with an average size of 1-2kb derived randomly from the virus genome was identified as the short-lived intermediates produced during AcMNPV replication. The intermediates likely include Okazaki fragments derived from the lagging strands in viral replication forks as well as fragments produced during the recombination-dependent replication. PMID:19560496

  7. Superresolution Imaging of Targeted Proteins in Fixed and Living Cells Using Photoactivatable Organic Fluorophores

    PubMed Central

    Lee, Hsiao-lu D.; Lord, Samuel J.; Iwanaga, Shigeki; Zhan, Ke; Xie, Hexin; Williams, Jarrod C.; Wang, Hui; Bowman, Grant R.; Goley, Erin D.; Shapiro, Lucy; Twieg, Robert J.; Rao, Jianghong; Moerner, W. E.

    2010-01-01

    Superresolution imaging techniques based on sequential imaging of sparse subsets of single molecules require fluorophores whose emission can be photoactivated or photoswitched. Because typical organic fluorophores can emit significantly more photons than average fluorescent proteins, organic fluorophores have a potential advantage in superresolution imaging schemes, but targeting to specific cellular proteins must be provided. We report the design and application of HaloTag-based target-specific azido DCDHFs, a class of photoactivatable push–pull fluorogens which produce bright fluorescent labels suitable for single-molecule superresolution imaging in live bacterial and fixed mammalian cells. PMID:20936809

  8. OZONE TREATMENT OF SOLUBLE ORGANICS IN PRODUCED WATER

    SciTech Connect

    Klasson, KT

    2002-03-14

    This project was an extension of previous research to improve the applicability of ozonation and will help address the petroleum-industry problem of treating produced water containing soluble organics. The goal of this project was to maximize oxidation of hexane-extractable organics during a single-pass operation. The project investigated: (1) oxidant production by electrochemical and sonochemical methods, (2) increasing the mass transfer rate in the reactor by forming microbubbles during ozone injection into the produced water, and (3) using ultraviolet irradiation to enhance the reaction if needed. Several types of methodologies for treatment of soluble organics in synthetic and actual produced waters have been performed. The technologies tested may be categorized as follows: (1) Destruction via sonochemical oxidation at different pH, salt concentration, ultraviolet irradiation, and ferrous iron concentrations. (2) Destruction via ozonation at different pH, salt concentration, hydrogen peroxide concentrations, ultraviolet irradiation, temperature, and reactor configurations.

  9. Properties of short-living ball lightning produced in the laboratory

    NASA Astrophysics Data System (ADS)

    Egorov, A. I.; Stepanov, S. I.

    2008-06-01

    An experimental setup for highly reproducible generation of artificial ball lightnings is implemented. Thousands of floating glowing plasmoids 12-20 cm in diameter are produced. Research facilities for studying the plasmoids are developed. It is found that short-lived ball lightnings live for about 1 s and carry an electric charge. The lightnings are shown to have a complex structure: a central kernel containing a rich variety of hydrated ions and aerosol of decay products is surrounded by a thin negatively charged shell.

  10. Metabolic evolution of Escherichia coli strains that produce organic acids

    DOEpatents

    Grabar, Tammy; Gong, Wei; Yocum, R Rogers

    2014-10-28

    This invention relates to the metabolic evolution of a microbial organism previously optimized for producing an organic acid in commercially significant quantities under fermentative conditions using a hexose sugar as sole source of carbon in a minimal mineral medium. As a result of this metabolic evolution, the microbial organism acquires the ability to use pentose sugars derived from cellulosic materials for its growth while retaining the original growth kinetics, the rate of organic acid production and the ability to use hexose sugars as a source of carbon. This invention also discloses the genetic change in the microorganism that confers the ability to use both the hexose and pentose sugars simultaneously in the production of commercially significant quantities of organic acids.

  11. Acute toxicity of saline produced waters to marine organisms

    SciTech Connect

    Pillard, D.A.; Evans, J.M.; DuFresne, D.L.

    1996-11-01

    Produced waters from oil and gas drilling operations are typically very saline, and may cause acute toxicity to marine organisms due imbalances as well as to an excess or deficiency of to osmotic specific common ions. In order to better understand the relationship between toxicity and ion concentration, laboratory toxicity tests were conducted using mysid shrimp (Mysidopsis bahia), sheepshead minnow, (Cyprinodon variegatus), and inland silvemide (Menidia beryllina). For each species the ionic concentration of standard laboratory water was proportionally increased or decreased to produce test solutions with a range of salinities. Individual ions (sodium, potassium, calcium, magnesium, strontium, chloride, bromide, sulfate, bicarbonate, and borate) were also manipulated to examine individual ion toxicity. Organisms were exposed for 48 hours. The three test species differ in their tolerance of salinity. Mysid shrimp show a marked decrease in survival at salinities less than approximately 5 ppt. Both fish species tolerated low salinity water, however, silversides were less tolerant of saline waters (salinity greater than 40 ppt). There were also significant differences in the responses of the organisms to different ions. The results show that salinity of the test solution may play an important role in the responses of the organisms to produced water effluent. Predictable toxicity/ion relationships developed in this study can be used to estimate whether toxicity in produced water is a result of common ions, salinity, or some other unknown toxicant.

  12. 7 CFR 1216.19 - Peanut producer organization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 10 2011-01-01 2011-01-01 false Peanut producer organization. 1216.19 Section 1216.19... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Definitions § 1216.19 Peanut...

  13. 7 CFR 1216.19 - Peanut producer organization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Peanut producer organization. 1216.19 Section 1216.19... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Definitions § 1216.19 Peanut...

  14. 7 CFR 1205.316 - Cotton-Producer organization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 10 2011-01-01 2011-01-01 false Cotton-Producer organization. 1205.316 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.316...

  15. 7 CFR 1205.316 - Cotton-Producer organization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 10 2012-01-01 2012-01-01 false Cotton-Producer organization. 1205.316 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.316...

  16. 7 CFR 1205.316 - Cotton-Producer organization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 10 2013-01-01 2013-01-01 false Cotton-Producer organization. 1205.316 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.316...

  17. 7 CFR 1205.316 - Cotton-Producer organization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 10 2014-01-01 2014-01-01 false Cotton-Producer organization. 1205.316 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.316...

  18. 7 CFR 1205.316 - Cotton-Producer organization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Cotton-Producer organization. 1205.316 Section 1205... SERVICE (MARKETING AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE COTTON RESEARCH AND PROMOTION Cotton Research and Promotion Order Definitions § 1205.316...

  19. THE REVISED ORGANIC CHEMICAL PRODUCERS DATA BASE SYSTEM

    EPA Science Inventory

    This report describes the revised Organic Chemical Producers Data Base (OCPDB), an automated chemical information system developed for the U.S. Environmental Protection Agency (EPA). Improvements have been made in two ways: (1) expansion of the data base to include more chemicals...

  20. 7 CFR 1216.19 - Peanut producer organization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 10 2012-01-01 2012-01-01 false Peanut producer organization. 1216.19 Section 1216.19... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Definitions § 1216.19 Peanut...

  1. 7 CFR 1216.19 - Peanut producer organization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 10 2013-01-01 2013-01-01 false Peanut producer organization. 1216.19 Section 1216.19... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Definitions § 1216.19 Peanut...

  2. 7 CFR 1216.19 - Peanut producer organization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 10 2014-01-01 2014-01-01 false Peanut producer organization. 1216.19 Section 1216.19... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Definitions § 1216.19 Peanut...

  3. Racemization and the origin of optically active organic compounds in living organisms

    NASA Technical Reports Server (NTRS)

    Bada, J. L.; Miller, S. L.

    1987-01-01

    The organic compounds synthesized in prebiotic experiments are racemic mixtures. A number of proposals have been offered to explain how asymmetric organic compounds formed on the Earth before life arose, with the influence of chiral weak nuclear interactions being the most frequent proposal. This and other proposed asymmetric syntheses give only sight enantiomeric excess and any slight excess will be degraded by racemization. This applies particularly to amino acids where half-lives of 10(5)-10(6) years are to be expected at temperatures characteristic of the Earth's surface. Since the generation of chiral molecules could not have been a significant process under geological conditions, the origins of this asymmetry must have occurred at the time of the origin of life or shortly thereafter. It is possible that the compounds in the first living organisms were prochiral rather than chiral; this is unlikely for amino acids, but it is possible for the monomers of RNA-like molecules.

  4. Organic compounds in produced waters from shale gas wells.

    PubMed

    Maguire-Boyle, Samuel J; Barron, Andrew R

    2014-01-01

    A detailed analysis is reported of the organic composition of produced water samples from typical shale gas wells in the Marcellus (PA), Eagle Ford (TX), and Barnett (NM) formations. The quality of shale gas produced (and frac flowback) waters is a current environmental concern and disposal problem for producers. Re-use of produced water for hydraulic fracturing is being encouraged; however, knowledge of the organic impurities is important in determining the method of treatment. The metal content was determined by inductively coupled plasma optical emission spectrometry (ICP-OES). Mineral elements are expected depending on the reservoir geology and salts used in hydraulic fracturing; however, significant levels of other transition metals and heavier main group elements are observed. The presence of scaling elements (Ca and Ba) is related to the pH of the water rather than total dissolved solids (TDS). Using gas chromatography mass spectrometry (GC/MS) analysis of the chloroform extracts of the produced water samples, a plethora of organic compounds were identified. In each water sample, the majority of organics are saturated (aliphatic), and only a small fraction comes under aromatic, resin, and asphaltene categories. Unlike coalbed methane produced water it appears that shale oil/gas produced water does not contain significant quantities of polyaromatic hydrocarbons reducing the potential health hazard. Marcellus and Barnett produced waters contain predominantly C6-C16 hydrocarbons, while the Eagle Ford produced water shows the highest concentration in the C17-C30 range. The structures of the saturated hydrocarbons identified generally follows the trend of linear > branched > cyclic. Heterocyclic compounds are identified with the largest fraction being fatty alcohols, esters, and ethers. However, the presence of various fatty acid phthalate esters in the Barnett and Marcellus produced waters can be related to their use in drilling fluids and breaker additives rather than their presence in connate fluids. Halogen containing compounds are found in each of the water samples, and although the fluorocarbon compounds identified are used as tracers, the presence of chlorocarbons and organobromides formed as a consequence of using chlorine containing oxidants (to remove bacteria from source water), suggests that industry should concentrate on non-chemical treatments of frac and produced waters. PMID:25162586

  5. Long-lived states of antiprotonic lithium pLi {sup +} produced in p+ Li collisions

    SciTech Connect

    Sakimoto, Kazuhiro

    2011-09-15

    Antiproton capture by lithium atoms (p+Li{yields}pLi{sup +}+e) is investigated at collision energies from 0.01 to 10 eV by using a semiclassical (also know as quantum-classical hybrid) method, in which the radial distance between the antiproton and the Li{sup +} ion is treated as a classical variable, and the other degrees of freedom are described by quantum mechanics. Analyzing the wave packet of the emitted electrons and making use of the energy conservation rule enable us to calculate the state distribution of the produced antiprotonic lithium pLi{sup +} atoms and also to distinguish between the capture and ionization ({yields}p+Li{sup +}+e) channels at collisional energies above the ionization threshold. This method is tested for the capture of negative muons by hydrogen atoms, which was rigorously investigated in previous quantum mechanical studies. Most of the pLi{sup +} atoms produced in p+Li are found to be sufficiently stable against Auger decays and are experimentally observable as long-lived states. The present system bears close similarities to the system of p+He(2S). It is therefore expected that long-lived antiprotonic helium pHe{sup +} atoms can be efficiently produced in the p capture by metastable He(2 {sup 3}S) atoms.

  6. OZONE TREATMENT OF SOLUBLE ORGANICS IN PRODUCED WATER (FEAC307)

    SciTech Connect

    Klasson, KT

    2001-03-20

    Oil production is shifting from ''shallow'' wells (0-650 ft water depth) to off-shore, deep-water operations (>2,600 ft.). Production from these operations is now approaching 20%. By 2007, it is projected that as much as 70% of the U.S. oil production will be from deep-water operations. The crude oil from these deep wells is more polar, thus increasing the amount of dissolved hydrocarbons in the produced water. Early data from Gulf of Mexico (GOM) wells indicate that the problem with soluble organics will increase significantly as deep-water production increases. Existing physical/chemical treatment technologies used to remove dispersed oil from produced water will not remove dissolved organics. GOM operations are rapidly moving toward design of high-capacity platforms that will require compact, low-cost, efficient treatment processes to comply with current and future water quality regulations. This project is an extension of previous research to improve the applicability of ozonation and will help address the petroleum industry-wide problem of treating water containing soluble organics. The goal of this project is to maximize oxidation of water-soluble organics during a single-pass operation. The project investigates: (1) oxidant production by electrochemical and sonochemical methods, (2) increasing the mass transfer rate in the reactor by forming microbubbles during ozone injection into the produced water, and (3) using ultraviolet irradiation to enhance the reaction if needed. Industrial collaborators include Chevron, Shell, Phillips, BP Amoco, Statoil, and Marathon Oil through a joint project with the Petroleum Environmental Research Forum (PERF). The research and demonstration program consists of three phases: (1) Laboratory testing in batch reactors to compare effectiveness of organics destruction using corona discharge ozone generation methods with hydrogen peroxide generated sonochemically and to evaluate the enhancement of destruction by UV light and micro-bubble spraying. (2) Continuous-flow studies to determine the efficacy of various contactors, the dependency of organics destruction on process variables, and scale-up issues. (3) Field testing of a prototype system in close collaboration with an industrial partner to generate performance data suitable for scale-up and economic evaluation.

  7. Wind Shear May Produce Long-Lived Storms and Squall Lines on Titan

    NASA Astrophysics Data System (ADS)

    Rafkin, Scot C. R.; Barth, Erika

    2015-11-01

    The impact of CAPE and wind shear on storms in a Titan-like environment are explored through numerical simulation. Numerical modeling indicates that both large-scale shear and CAPE environment control the dynamics of the clouds. This response to the large-scale environment is analogous to the behavior of deep convective clouds on Earth. The balance between shear and CAPE, as expressed through the bulk Richardson Number (NR), is a good indicator of the response of a storm to its environment. Large NR results in short-lived single cell storms (Figure 1). As shear increases for a given CAPE, and NR decreases, the storms transition to a multicellular regime. Multicellular storms are longer-lived and are characterized by a downdraft generated cold pool that interacts with the background shear vorticity to initiate cells along the leading edge of the storm gust front (Figure 2). Very long-lived storms (>24 hours) propagating for 1000 km or more might be possible. The most intense multicellular systems simulated in this study behave similar to terrestrial squall lines, and very long-lived storms (>24 hours) propagating for 1000 km or more might be possible. Cloud outbursts and linear cloud features observed from ground and Cassini may be the result of these organized storm systems. Varying amounts of shear in the Titan environment might explain the variety of convective cloud expressions identified in Cassini orbiter and ground-based observations. The resulting distribution and magnitude of precipitation as well as surface winds associated with storms have implications on the formation of fluvial and aeolian features, including dunes, and on the exchange of methane with the surface and lakes.

  8. The Cost of Organ Donation: Potential Living Kidney Donors' Perspectives.

    PubMed

    Cuesta-Briand, Beatriz; Wray, Natalie; Boudville, Neil

    2015-11-01

    Living kidney transplantation is a treatment option for some people with end-stage kidney disease. The procedure has low complication rates and positive outcomes; despite this evidence, the number of living kidney donations has decreased in recent years, and the causes are not well understood. This qualitative study sought to explore the experiences of potential living kidney donors before the transplantation. A total of 19 semistructured interviews were conducted with potential living kidney donors in Perth, Western Australia. Results reported here relate to participants' experience of the employment and financial implications of living kidney donation. Participants incurred direct and indirect costs during the time leading up to the transplantation, and many had concerns about the potential financial impact during the recovery period. Employment status, occupation type, and financial commitments affected participants' experiences, and financial concerns were exacerbated for those who were donating to their partners. Results suggest that potential living kidney donors would benefit from tailored financial planning advice to help them prepare for the time of the surgery and the recovery period. PMID:26638507

  9. The Use of Living Organisms in Schools: Advice and Support from Science Inspectors.

    ERIC Educational Resources Information Center

    Lock, Roger

    1996-01-01

    Focuses on the advice and support from science inspectors or advisers with respect to the use of living organisms in schools. Reports that advice, support, and encouragement in the use of living organisms in teaching was widely available at the time of this study and schools have a great deal to lose from the shrinkage in the advisory service.…

  10. Engineered biosealant strains producing inorganic and organic biopolymers.

    PubMed

    Bergdale, Terran E; Pinkelman, Rebecca J; Hughes, Stephen R; Zambelli, Barbara; Ciurli, Stefano; Bang, Sookie S

    2012-10-31

    Microbiologically induced calcium carbonate precipitation (MICCP) is a naturally occurring biological process that has shown its potential in remediation of a wide range of structural damages including concrete cracks. In this study, genetically engineered microorganisms, capable of producing extracellular polymeric substances (EPSs) as well as inducing MICCP, were developed based on the assumption that the complex of inorganic CaCO(3) and organic EPS would provide a stronger matrix than MICCP alone as biosealant. In order to develop a recombinant biosealant microorganism, the entire Sporosarcina pasteurii urease gene sequences including ureA, ureB, ureC, ureD, ureE, ureF, and ureG from plasmid pBU11 were sub-cloned into the shuttle vector, pUCP18. The newly constructed plasmid, pUBU1, was transformed into two Pseudomonas aeruginosa strains, 8821 and PAO1, to develop recombinants capable of inducing calcite precipitation in addition to their own ability to produce EPS. Nickel-dependent urease activities were expressed from the recombinant P. aeruginosa 8821 (pUBU1) and P. aeruginosa PAO1 (pUBU1), at 99.4% and 60.9% of the S. pasteurii urease activity, respectively, in a medium containing 2mM NiCl(2). No urease activities were detected from the wild type P. aeruginosa 8821 and P. aeruginosa PAO1 under the same growth conditions. Recombinant Pseudomonas strains induced CaCO(3) precipitation at a comparable rate as S. pasteurii and scanning electron microscopy evidenced the complex of CaCO(3) crystals and EPS layers surrounding the cells. The engineered strains produced in this study are expected to serve as a valuable reference to future biosealants that could be applied in the environment. However, the pathogenic potential of P. aeruginosa, used here only as a model system to show the proof of principle, prevents the use of this recombinant organism as a biosealant. In practical applications, other recombinant organisms should be used. PMID:22789480

  11. Iron carbide nanoparticles produced by laser ablation in organic solvent

    NASA Astrophysics Data System (ADS)

    Matsue, T.; Yamada, Y.; Kobayashi, Y.

    2012-03-01

    Laser ablation of iron in an organic solvent (pentane, hexane, or decane) was performed using an air-tight cell to produce iron carbide nanoparticles. Mössbauer spectra of the nanoparticles were obtained at room temperature. They revealed that the nanoparticles consisted of two paramagnetic components and magnetic components. The two paramagnetic components were a high-spin Fe(II) species and an amorphous iron carbide containing a large amount of carbon. Whereas the magnetic components measured at room temperature exhibited superparamagnetism, those measured at low temperature were fitted by a combination of four sextets, which were assigned to Fe7 C 3. The Fe7 C 3 yield was higher in higher molecular weight solvents. Transmission electron microscopy (TEM) images of the samples showed that the nanoparticles were spherical with diameters in the range 10-100 nm.

  12. Organic acid-tolerant microorganisms and uses thereof for producing organic acids

    SciTech Connect

    Pfleger, Brian Frederick; Begemann, Matthew Brett

    2014-05-06

    Organic acid-tolerant microorganisms and methods of using same. The organic acid-tolerant microorganisms comprise modifications that reduce or ablate AcsA activity or AcsA homolog activity. The modifications increase tolerance of the microorganisms to such organic acids as 3-hydroxypropionic acid (3HP), acrylic acid, and propionic acid. Further modifications to the microorganisms such as increasing expression of malonyl-CoA reductase and/or acetyl-CoA carboxylase provide or increase the ability of the microorganisms to produce 3HP. Methods of generating an organic acid with the modified microorganisms are provided. Methods of using acsA or homologs thereof as counter-selectable markers include replacing acsA or homologs thereof in cells with genes of interest and selecting for the cells comprising the genes of interest with amounts of organic acids effective to inhibit growth of cells harboring acsA or the homologs.

  13. Volatile organic compounds of polyethylene vinyl acetate plastic are toxic to living organisms.

    PubMed

    Meng, Tingzhu Teresa

    2014-01-01

    Volatile organic compounds (VOCs) in polyvinyl chloride (PVC) plastic products readily evaporate; as a result, hazardous gases enter the ecosystem, and cause cancer in humans and other animals. Polyethylene vinyl acetate (PEVA) plastic has recently become a popular alternative to PVC since it is chlorine-free. In order to determine whether PEVA is harmful to humans, this research employed the freshwater oligochaete Lumbriculus variegatus as a model to compare their oxygen intakes while they were exposed to the original stock solutions of PEVA, PVC or distilled water at a different length of time for one day, four days or eight days. During the exposure periods, the oxygen intakes in both PEVA and PVC groups were much higher than in the distilled water group, indicating that VOCs in both PEVA and PVC were toxins that stressed L. variegatus. Furthermore, none of the worms fully recovered during the24-hr recovery period. Additionally, the L. variegatus did not clump together tightly after four or eight days' exposure to either of the two types of plastic solutions, which meant that both PEVA and PVC negatively affected the social behaviors of these blackworms. The LD50 tests also supported the observations above. For the first time, our results have shown that PEVA plastic has adverse effects on living organisms, and therefore it is not a safe alternative to PVC. Further studies should identify specific compounds causing the adverse effects, and determine whether toxic effect occurs in more complex organisms, especially humans. PMID:25242410

  14. How killed enterobacterial cultures can activate living organisms to resist lethal agents or conditions.

    PubMed

    Rowbury, Robin J

    2003-01-01

    A major aim in many areas of microbiology is to ensure sterility, and even where this is impossible, to reduce the number of viable organisms occurring in particular environments to an absolute minimum. This applies in the aquatic environment, where e.g. water treatment must ensure as complete absence of viable microbes as possible. It is also crucial in food processing and production; many food constituents contain appreciable numbers of viable organisms, even potential pathogens, and the number must be greatly reduced and in many situations, the presence of viable organisms totally abolished. Cleaning of food production components and surfaces must also kill associated microbes. In domestic, hospital and commercial situations, similar disinfection is critical. Ultimately, the aim is to ensure, if possible, sterility, with the assurance that microbial problems cannot occur if organisms are absent. Additionally, however, it has been implicitly assumed that killed organisms and even killed cultures cannot (except in minor and trivial ways) influence the behaviour of living organisms that later enter the environment. The work reviewed here challenges that view and in fact disproves it. The findings described show that killed enterobacterial cultures, which prior to killing had phenotypically gained the ability to resist potentially lethal stresses, can pass on such ability to living organisms that later enter their environment i.e. that such killed cultures can convey a baleful legacy to living ones. This phenomenon is so widespread that it is clear that it has significance for enterobacterial survival in natural waters, in foods and in food production, in the domestic, commercial and hospital situation, and in the animal and human body. In fact, in this last area, the likely effect of killed cultures appears to be of appreciable public health importance. Here, the ability of appropriate killed cultures to transfer tolerance to acidity, alkalinity and thermal stress is described, as well as their ability to pass on sensitisation to acid and alkali. Other work reviewed suggests that killed cultures can almost certainly transfer the ability to tolerate hydrogen peroxide, ultraviolet irradiation and metal ions. The serious implications of this phenomenon are further emphasised by the fact that numerous killing methods produce cultures effective in tolerance response transfer. All the evidence suggests that it is extracellular components (extracellular sensing components, ESCs, and extracellular induction components, EICs), in the killed cultures which are involved in stress response transfer, and that the actual stress response induction process depends on interaction of living organisms with EICs from the killed cultures. It is of note that ESCs and EICs survive in killed cultures because of their extreme resistance to irreversible inactivation by lethal levels of stressing agents and conditions. This is in contrast to the fact that EC activation, namely the conversion of ESC to EIC occurs on exposure to very low levels of stressors. Not only is this the case, but in fact high levels of stressors (e.g. those that kill organisms) generally fail to convert ESC to EIC. PMID:15079995

  15. "Living cadavers" in Bangladesh: bioviolence in the human organ bazaar.

    PubMed

    Moniruzzaman, Monir

    2012-03-01

    The technology-driven demand for the extraction of human organs--mainly kidneys, but also liver lobes and single corneas--has created an illegal market in body parts. Based on ethnographic fieldwork, in this article I examine the body bazaar in Bangladesh: in particular, the process of selling organs and the experiences of 33 kidney sellers who are victims of this trade. The sellers' narratives reveal how wealthy buyers (both recipients and brokers) tricked Bangladeshi poor into selling their kidneys; in the end, these sellers were brutally deceived and their suffering was extreme. I therefore argue that the current practice of organ commodification is both exploitative and unethical, as organs are removed from the bodies of the poor by inflicting a novel form of bioviolence against them. This bioviolence is deliberately silenced by vested interest groups for their personal gain. PMID:22574392

  16. Ribosomal resistance in the gentamicin producer organism Micromonospora purpurea.

    PubMed Central

    Piendl, W; Böck, A

    1982-01-01

    The mechanism of resistance of the gentamicin-producing organism Micromonospora purpurea was analyzed. Determination of minimal inhibitory concentrations revealed high resistance to the 4,6-substituted deoxystreptamine aminoglycosides amikacin, gentamicin, kanamycin, netilmicin, sisomicin, and tobramycin and also to lividomycin A and hygromycin B, but susceptibility to streptomycin, dihydrostreptomycin, paromomycin, and neomycin during all phases of the growth cycle. The nonproducing, closely related Micromonospora melanosporea was susceptible to these compounds. In agreement with results from previous studies (R. Benveniste and J. Davies, Proc. Natl. Acad. Sci. U.S.A. 70:2276-2280, 1973), extracts from M. purpurea showed no activity of enzymes specifically modifying gentamicin. 70S ribosomes from M. purpurea but not from M. melanosporea were resistant to inhibition by gentamicin, kanamycin, tobramycin, and lividomycin in a polyuridylic acid-dependent polyphenylalanine synthesis system and susceptible to those compounds which were inhibitory in vivo. The former antibiotics were also unable to induce misreading. Subunit exchange experiments between M. purpurea and M. melanosporea showed that the main site for inhibition and induction of misreading is the 30S subunit (up to gentamicin concentrations of 10 micrograms/ml). PMID:6927285

  17. CYSTIC FIBROSIS: AN INHERITED DISEASE AFFECTING MUCIN-PRODUCING ORGANS

    PubMed Central

    Ehre, Camille; Ridley, Caroline; Thornton, David J

    2014-01-01

    Our current understanding of cystic fibrosis (CF) has revealed that the biophysical properties of mucus play a considerable role in the pathogenesis of the disease in view of the fact that most mucus-producing organs are affected in CF patients. In this review, we discuss the potential causal relationship between altered cystic fibrosis transmembrane conductance regulator (CFTR) function and the production of mucus with abnormal biophysical properties in the intestine and lungs, highlighting what has been learned from cell cultures and animal models that mimic CF pathogenesis. A similar cascade of events, including mucus obstruction, infection and inflammation, is common to all epithelia affected by impaired surface hydration. Hence, the main structural components of mucus, namely the polymeric, gel-forming mucins, are critical to the onset of the disease. Defective CFTR leads to epithelial surface dehydration, altered pH/electrolyte composition and mucin concentration. Further, it can influence mucin transition from the intracellular to extracellular environment, potentially resulting in aberrant mucus gel formation. While defective HCO3? production has long been identified as a feature of CF, it has only recently been considered as a key player in the transition phase of mucins. We conclude by examining the influence of mucins on the biophysical properties of CF sputum and discuss existing and novel therapies aimed at removing mucus from the lungs. PMID:24685676

  18. Some Unknown Pages of the Living Organisms' First Orbital Flight

    NASA Astrophysics Data System (ADS)

    Malashenkov, D. C.

    2002-01-01

    The successful creation of ballistic rockets in USSR has allowed at the end of 1953 to make a real task of delivery of a payload into the Earth's orbit. In March 1954 during the meeting in the Academy of Sciences of USSR, the basic research problems conducted by means of artificial satellites of the Earth were determined. In May, 1954 S. Korolev has sent to Government of the USSR the report with the offer of creation the space satellites on the basis of intercontinental ballistic rocket -7 developed by him. It was the first time when the idea about possibility of interplanetary flights was stated in the official document. In August 1954 Council of Ministers of the USSR had ratified the submitted offers and have entrusted to work over scientific and theoretical problems of space flight. In the beginning of 1956 the Korolev's United Design Bureau was officially entrusted the creation and launch of undirected research satellite named "Object D" weighing 1.000-1.400 kg in 1957-1958. The main scientific management and development of scientific equipment was assigned to a commission of the Academy of Sciences of the USSR under the direction of . Keldysh. The measurement of parameters of the atmosphere, corpuscular radiation of the Sun, magnetic fields, space radiation etc. was planned during the "Object D" flight. The successful performance in the middle of 1956 of the second series of launches of geophysical rockets has allowed to gain a large volume of the information about parameters of physiological functions and behavior of animals in conditions of flight. For enlargement of these works the laboratory of V. Yazdovsky in the Institute of aviation medicine was extended to a department, the large group of the new employees, including V. Antipov, . Baevsky, I. Balakhovsky, B. Buylov, . Genin, O. Gazenko, A. Gurdjian, I. Kasyan, A. Kotovskaya, E..Yuganov, . Shepelev and others came to the department. But, owing to the delay of development of the scientific equipment for the "Object D", the Soviet Government set a new term of start in the end of 1956 - April, 1958. However, owing to the widely advertised program of launch of the first Earth's artificial satellite "Vanguard" in the USA, S. Korolev pressed in February 1957 for the Government regulation about anticipated launches of two light unrecoverable satellites in April-May, 1957 before the International geophysical year. But, according to this regulation, the launch of the satellite was permitted only after one or two successful test flights of a rocket -7. The first successful test of a rocket -7 was held only in August, 1957. The successful launch of the Earth's first artificial satellite in October 4, 1957 has made stunning influence on all the world. To continue this success, N. Khrushzev in October 10 1957 stated to launch the second satellite with an animal onboard till November 7 (40 years of October Revolution). The level of complexity of forthcoming tasks was much higher. Tightness of a cabin and the systems of life-support of the satellite should provide considerably large duration of flight under previous dimensions and power consumption. The research equipment should also ensure long uninterrupted registration of the scientific data and their transfer on ground stations. At last, the realization of additional training and special preparation of dogs was required. O. Gazenko, A. Genin, A. Seryapin, A. Gurdjian, . Petrova and other researchers carried out these works in laboratory of V. Yazdovsky. Less than one month remained for realization of this very difficult experiment with dog onboard. For preparation of experiments with dogs the experience of high-altitude rocket flights was taken. The cycles of step-by-step training of dogs for forthcoming flight have allowed to select the steadiest dogs and to receive the necessary initial data for design of the life-support systems. As a result of these works, a hermetic cabin with life-support systems and research equipment were developed. 10 dogs successfully finished complete course of training and experiments were also selected. Three dogs were selected for flight: Albina, Layka and Mushka. Albina flied on a rockets twice before, and it was decided to continue observation over it. The decision therefore was accepted to send Layka in flight. Albina was a double, and Mushka was a "technological dog" - all the equipment and life-support systems of the satellite were tested on it. The flight of the second artificial satellite of the Earth with Layka dog was held on November 3, 1957. All resources of life- support system were designed for 7 days of flight. The analysis of the data of the parameters of the environment of the cabin has shown, that the content of oxygen during flight was sufficient. The fact, that pressure in the cabin was not reduced, proved its reliable tightness. It was very important, as the satellite passed through areas of meteoric flows. Normalization of parameters of breath and blood circulation of Layka during orbital flight has allowed to make a conclusion, that the long weightlessness does not cause essential changes in a status of animal organisms. During flight the gradual increase of temperature and humidity in the cabin was registered via telemetric channels. Approximately in 5 - 7 hours of flight there was a failure of telemetry system. It was not possible to detect a status of the dog since the fourth circuit. During the ground simulation of this flight's conditions, the conclusion was made, that Layka should be lost because of overheating on 3d or 4-th circuit of flight. It turned out that it was practically impossible to create a reliable temperature control system in such limited time constraints. The biological research, which has been carried out on second satellite, has complimented a material obtained during vertical launches of rockets. The received experimental data have confirmed the initial assumption, that the conditions of space flight will not cause harm to live creatures, including humans. The achieved level of development of space medicine has allowed to approach closely the task of manned space flight. These researches were also carried within the framework of aviation medicine, though in practice were already outside its field of "jurisdiction".

  19. Doing harm: living organ donors, clinical research and The Tenth Man.

    PubMed Central

    Elliott, C

    1995-01-01

    This paper examines the ethical difficulties of organ donation from living donors and the problem of causing harm to patients or research subjects at their request. Graham Greene explored morally similar questions in his novella, The Tenth Man. PMID:7608947

  20. Dermal IL-17-producing ?? T cells establish long-lived memory in the skin.

    PubMed

    Hartwig, Tom; Pantelyushin, Stanislav; Croxford, Andrew L; Kulig, Paulina; Becher, Burkhard

    2015-11-01

    Conventional ?? T cells have the ability to form a long-lasting resident memory T-cell (TRM ) population in nonlymphoid tissues after encountering foreign antigen. Conversely, the concept of 'innate memory', where the ability of nonadaptive branches of the immune system to deliver a rapid, strengthened immune response upon reinfection or rechallenge, is just emerging. Using the ?? T-cell-independent Aldara psoriasis mouse model in combination with genetic fate-mapping and reporter systems, we identified a subset of ?? T cells in mice that is capable of establishing a long-lived memory population in the skin. IL-17A/F-producing V?4(+) V?4(+) T cells populate and persist in the dermis for long periods of time after initial stimulation with Aldara. Experienced V?4(+) V?4(+) cells show enhanced effector functions and mediate an exacerbated secondary inflammatory response. In addition to identifying a unique feature of ?? T cells during inflammation, our results have direct relevance to the human disease as this quasi-innate memory provides a mechanistic insight into relapses and chronification of psoriasis. PMID:26332438

  1. A catalytic antibody produces fluorescent tracers of gap junction communication in living cells.

    PubMed

    Subauste, M C; List, B; Guan, X; Hahn, K M; Lerner, R; Gilula, N B

    2001-12-28

    The antibody 38C2 efficiently catalyzed a retro-Michael reaction to convert a novel, cell-permeable fluorogenic substrate into fluorescein within living cells. In vitro, the antibody converted the substrate to fluorescein with a k(cat) of 1.7 x 10(-5) s(-1) and a catalytic proficiency (k(cat)/k(uncat)K(m)) of 1.4 x 10(10) m(-1) (K(m) = 7 microm). For hybridoma cells expressing antibody or Chinese Hamster Ovarian (CHO) cells injected with antibody, incubation of the substrate in the extracellular medium resulted in bright intracellular fluorescence distinguishable from autofluorescence or noncatalyzed conversion of substrate. CHO cells loaded with antibody were 12 times brighter than control cells, and more than 85% of injected cells became fluorescent. The fluorescein produced by the antibody traveled into neighboring cells through gap junctions, as demonstrated by blocking dye transfer using the gap junction inhibitor oleamide. The presence of functional gap junctions in CHO cells was confirmed through oleamide inhibition of lucifer yellow transfer. These studies demonstrate the utility of the intracellular antibody reaction, which could generate tracer dyes in specific cells within complex multicellular environments simply by bathing the system in substrate. PMID:11606573

  2. In Vivo and Real-time Monitoring of Secondary Metabolites of Living Organisms by Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Hu, Bin; Wang, Lei; Ye, Wen-Cai; Yao, Zhong-Ping

    2013-07-01

    Secondary metabolites are compounds that are important for the survival and propagation of animals and plants. Our current understanding on the roles and secretion mechanism of secondary metabolites is limited by the existing techniques that typically cannot provide transient and dynamic information about the metabolic processes. In this manuscript, by detecting venoms secreted by living scorpion and toad upon attack and variation of alkaloids in living Catharanthus roseus upon stimulation, which represent three different sampling methods for living organisms, we demonstrated that in vivo and real-time monitoring of secondary metabolites released from living animals and plants could be readily achieved by using field-induced direct ionization mass spectrometry.

  3. In Vivo and Real-time Monitoring of Secondary Metabolites of Living Organisms by Mass Spectrometry

    PubMed Central

    Hu, Bin; Wang, Lei; Ye, Wen-Cai; Yao, Zhong-Ping

    2013-01-01

    Secondary metabolites are compounds that are important for the survival and propagation of animals and plants. Our current understanding on the roles and secretion mechanism of secondary metabolites is limited by the existing techniques that typically cannot provide transient and dynamic information about the metabolic processes. In this manuscript, by detecting venoms secreted by living scorpion and toad upon attack and variation of alkaloids in living Catharanthus roseus upon stimulation, which represent three different sampling methods for living organisms, we demonstrated that in vivo and real-time monitoring of secondary metabolites released from living animals and plants could be readily achieved by using field-induced direct ionization mass spectrometry. PMID:23811725

  4. A novel hydroxamic acid-containing antibiotic produced by a Saharan soil-living Streptomyces strain.

    PubMed

    Yekkour, A; Meklat, A; Bijani, C; Toumatia, O; Errakhi, R; Lebrihi, A; Mathieu, F; Zitouni, A; Sabaou, N

    2015-06-01

    During screening for potentially antimicrobial actinobacteria, a highly antagonistic strain, designated WAB9, was isolated from a Saharan soil of Algeria. A polyphasic approach characterized the strain taxonomically as a member of the genus Streptomyces. The strain WAB9 exhibited a broad spectrum of antimicrobial activity toward various multidrug-resistant micro-organisms. A PCR-based assay of genomic potential for producing bioactive metabolites revealed the presence of PKS-II gene. After 6 days of strain fermentation, one bioactive compound was extracted from the remaining aqueous phase and then purified by HPLC. The chemical structure of the compound was determined by spectroscopic (UV-visible, and (1)H and (13)C NMR) and spectrometric analysis. The compound was identified to be 2-amino-N-(2-amino-3-phenylpropanoyl)-N-hydroxy-3-phenylpropanamide, a novel hydroxamic acid-containing molecule. The pure molecule showed appreciable minimum inhibitory concentration values against a selection of drug-resistant bacteria, filamentous fungi and yeasts. Significance and impact of the study: This study presents the isolation of a Streptomyces strain, named WAB9, from a Saharan soil in Algeria. This strain was found to produce a new hydroxamic acid-containing molecule with interesting antimicrobial activities towards various multidrug-resistant micro-organisms. Although hydroxamic acid-containing molecules are known to exhibit low toxicities in general, only real evaluations of the toxicity levels could decide on the applications for which this new molecule is potentially most appropriate. Thus, this article provides a new framework of research. PMID:25754683

  5. Quantum Mechanics Action of ELF Electromagnetic Fields on Living Organisms

    NASA Astrophysics Data System (ADS)

    Godina-Nava, J. J.

    2010-10-01

    There is presently an intense discussion if extremely low frequency electromagnetic field (ELF-EMF) exposure has consequences for human health. This include exposure to structures and appliances from this range of frequency in the electromagnetic (EM) spectrum. Biological effects of such exposures have been noted frequently, although the implications for specific health effects is not that clear. The basic interactions mechanisms between such fields and living matter is unknown. Numerous hypotheses have been suggested, although none is convincingly supported by experimental data. Various cellular components, processes, and systems can be affected by EMF exposure. Since it is unlikely that EMF can induce DNA damage directly, most studies have examined EMF effects on the cell membrane level, general and specific gene expression, and signal transduction pathways. Even more, a large number of studies have been performed regarding cell proliferation, cell cycle regulation, cell differentiation, metabolism, and various physiological characteristics of cells. The aim of this letter is present the hypothesis of a possible quantum mechanic effect generated by the exposure of ELF EMF, an event which is compatible with the multitude of effects observed after exposure. Based on an extensive literature review, we suggest that ELF EMF exposure is able to perform such activation restructuring the electronic level of occupancy of free radicals in molecules interacting with DNA structures.

  6. 9 CFR 103.2 - Disposition of animals administered experimental biological products or live organisms.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Disposition of animals administered experimental biological products or live organisms. 103.2 Section 103.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND ANALOGOUS PRODUCTS; ORGANISMS AND...

  7. New method to detect organic nanoparticles in live tissue

    NASA Astrophysics Data System (ADS)

    Fixler, Dror; Yariv, Inbar

    2015-03-01

    In recent years, infiltrating materials into the human body has become a great challenge many researches are facing. In medicine and cosmetics today, there are materials which are administrated to patients by injection only. The main challenge with topical medication is penetrating the skin barrier. The skin is an effective barrier between the body and the outside environment, which prevents foreign materials entering the body easily. However, reducing the size of the desired materials might help their skin penetration ability. Recently nanoparticles (NPs) are being evaluated for use in many fields like chemistry, biology, medicine, physics and optics. The technique used in this work for forming organic NPs (ONPs) is the application of sonic waves to an aqueous solution, known as sonochemistry. To investigate the physical penetration depth of ONPs into the human body, we first developed a novel optical technique for detecting NPs within tissues. The detection of NPs is done by the extraction and investigation of the reemitted light phase.

  8. Islamic Sunni Mainstream Opinions on Compensation to Unrelated Live Organ Donors

    PubMed Central

    Natour, Ahmad; Fishman, Shammai

    2011-01-01

    This article focuses on contemporary Islamic attitudes towards the question of compensation to a non-relative live organ donor. This article presents the history of the debate on organ transplantation in Islam since the 1950s and the key ethical questions. It continues by presenting the opinions of the mainstream ulema such as Tantawi and Qaradawi. The article ends with a conclusion that there must be no compensation made to a non-related live organ donor, not even a symbolic gift of honor (ikramiyya). PMID:23908804

  9. The Relevance of Directive 2010/53/EU for Living Organ Donation Practice: An ELPAT View.

    PubMed

    Van Assche, Kristof; Sterckx, Sigrid; Lennerling, Annette; Mamode, Nizam; Citterio, Franco; Frunza, Mihaela; Zuidema, Willij C; Burnapp, Lisa; Weimar, Willem; Dor, Frank J M F

    2015-10-01

    With the recent transposition of Directive 2010/53/EU into the transplant regulation of EU Member States, the time is right to have a closer look at its implications for living organ donation practice. We first discuss the relevance of the Action Plan which forms the basis for the policy of the European Commission in the field of organ donation and transplantation. We then analyze the impact of Directive 2010/53/EU which was adopted to support the implementation of the Priority Actions set out in the Action Plan. We more specifically focus on the obligations of transplant centers engaged in living organ donation and highlight their significance for clinical practice. Finally, we point out some strengths and weaknesses of the Directive in addressing living organ donation. PMID:25856404

  10. Communication and the Emergence of Collective Behavior in Living Organisms: A Quantum Approach

    PubMed Central

    Bischof, Marco; Del Giudice, Emilio

    2013-01-01

    Intermolecular interactions within living organisms have been found to occur not as individual independent events but as a part of a collective array of interconnected events. The problem of the emergence of this collective dynamics and of the correlated biocommunication therefore arises. In the present paper we review the proposals given within the paradigm of modern molecular biology and those given by some holistic approaches to biology. In recent times, the collective behavior of ensembles of microscopic units (atoms/molecules) has been addressed in the conceptual framework of Quantum Field Theory. The possibility of producing physical states where all the components of the ensemble move in unison has been recognized. In such cases, electromagnetic fields trapped within the ensemble appear. In the present paper we present a scheme based on Quantum Field Theory where molecules are able to move in phase-correlated unison among them and with a self-produced electromagnetic field. Experimental corroboration of this scheme is presented. Some consequences for future biological developments are discussed. PMID:24288611

  11. Carriage of CTX-M-15-Producing Escherichia coli Isolates among Children Living in a Remote Village in Senegal?

    PubMed Central

    Ruppé, Etienne; Woerther, Paul-Louis; Diop, Abdoulaye; Sene, Anne-Marie; Da Costa, Annaelle; Arlet, Guillaume; Andremont, Antoine; Rouveix, Bernard

    2009-01-01

    Two out of 20 children with no known antibiotic exposure, living in a very remote Senegalese village, were found to be fecal carriers of a multiresistant Escherichia coli clone that produced CTX-M-15. This highlights the current massive spread of extended-spectrum ?-lactamases, even in isolated communities. PMID:19364858

  12. Two-photon fluorescent probe for detection of exogenous and endogenous hydrogen persulfide and polysulfide in living organisms.

    PubMed

    Zeng, Lingyu; Chen, Shiyu; Xia, Tian; Hu, Wei; Li, Chunya; Liu, Zhihong

    2015-03-01

    Hydrogen persulfide and polysulfide (H2S(n)) are newly discovered intracellular reactive species considered to have high protein S-sulfhydration efficiency. The detection of H2S(n) in living systems is essential for studying their functions but is quite challenging. In this work, we report a two-photon excited fluorescent probe, QS(n), capable of tracking H2S(n) in living organisms. QS(n) exhibited turn-on two-photon fluorescence response upon reaction with H2S(n). With a favorable photophysical property, high specificity, and low cytotoxicity, QS(n) was able to recognize exogenous H2S(n) in living cells. More importantly, it realized for the first time the visualization of endogenous H2S(n) generated in cells overexpressing cystathionine ?-synthase and cystathionine ?-lyase, the enzymes responsible for producing endogenous H2S(n). Taking advantage of two-photon microscopy, the probe was also applied to achieve H2S(n) detection in zebrafish embryos and to observe H2S(n) distribution in living organisms. PMID:25655109

  13. Probing transplant and living donor candidates about their participation in organ vending.

    PubMed

    Bramstedt, Katrina A

    2010-09-01

    The selling of human organs for transplant is illegal in the United States and in most countries; however, such transactions still occur. Transplant hospitals and their personnel have multiple ethical duties, including (1) protecting the safety of their living donors and transplant recipients and (2) protecting the integrity of living donation and transplantation as clinical practices. To date, few psychosocial screening tools exist that pertain specifically to a person's risk or intent of pursuing organ vending (buying or selling). This article presents a series of transplant ethics case consultations that spawned the creation of a set of behavioral prompts for teams to probe with regard to organ vending when screening candidates about their suitability for participation as living donors or transplant recipients. PMID:20929116

  14. Dealing With Public Solicitation of Organs From Living Donors--An ELPAT View.

    PubMed

    Frunza, Mihaela; Van Assche, Kristof; Lennerling, Annette; Sterckx, Sigrid; Citterio, Franco; Mamode, Nizam; Zuidema, Willij C; Burnapp, Lisa; Weimar, Willem; Dor, Frank J M F

    2015-10-01

    Although transplant professionals have initially been reluctant to perform transplants after public solicitation of organs from living donors, nowadays these transplants are increasingly being performed and reported. After clarifying the existing terminology, we elaborate an operational definition of public solicitation that is consistent with the Ethical, Legal, and Psychosocial Aspects of Transplantation classification for living organ donation. Our aim is to critically assess this phenomenon, from a legal, moral, and practical perspective, and to offer some recommendations. From a legal point of view, we analyze the current situation in the Europe and the United States. From a moral perspective, we evaluate the various arguments used in the literature, both in favor and against. Finally, we offer a set of recommendations aimed at maximizing the organ donor pool while safeguarding the interests of potential living donors. PMID:25769072

  15. Research on MI in Equipoise: The Case of Living Organ Donation.

    PubMed

    Zuckoff, Allan; Dew, Mary Amanda

    2012-01-01

    Residual ambivalence prior to live organ donation has been shown to predict worse physical and psychological outcomes for the donor following surgery. We are studying whether MI can help individuals who have agreed to become living organ donors to resolve residual ambivalence about their decision. In this situation, ethical practice demands that the counselor take up a stance of equipoise, equally welcoming of strengthened resolve to donate or a decision not to do so. This paper describes our adaptations of MI for this unique application. PMID:23106035

  16. A living demonstration of certified organic farming by Oklahoma State University and USDA, Agricultural Research Service

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Organic crop production is the fastest growing portion of U.S. agriculture, increasing a minimum of 20% annually during the last 15 years. The establishment of federal guidelines for organic certification in 2002 provided a structure for producers and processors to market certified organic foods. ...

  17. Enantiomeric separation of complex organic molecules produced from irradiation of interstellar/circumstellar ice analogs

    NASA Astrophysics Data System (ADS)

    Nuevo, M.; Meierhenrich, U. J.; D'Hendecourt, L.; Muñoz Caro, G. M.; Dartois, E.; Deboffle, D.; Thiemann, W. H.-P.; Bredehöft, J.-H.; Nahon, L.

    Irradiation of interstellar/circumstellar ice analogs by ultraviolet (UV) light followed by warm up in the laboratory leads to the formation of complex organic molecules, stable at room temperature. Hydrolysis of the room temperature residue releases amino acids, the building blocks of proteins. These amino acids exist in two different forms (L and D), but proteins encountered in living beings consist exclusively of L enantiomers. The origin of this property, called homochirality, is still unknown. Amino acids can be detected and quantified by chemical techniques such as chiral gas chromatography coupled with mass spectrometry (GC-MS). Enantiomers of chiral organics are also known to interact selectively with circularly polarized light (CPL), leading to a selective production or destruction of the final compounds. This paper describes how we settled an experiment where amino acids are formed by irradiation of interstellar/circumstellar ice analogs with ultraviolet (UV) CPL, produced by a synchrotron radiation beamline, which allowed us to quantify the effect of such polarized light on the production of amino acids. These results can be compared to the enantiomeric excesses measured in primitive meteorites such as Murchison.

  18. Dissolved organic matter composition drives the marine production of brominated very short-lived substances.

    PubMed

    Liu, Yina; Thornton, Daniel C O; Bianchi, Thomas S; Arnold, William A; Shields, Michael R; Chen, Jie; Yvon-Lewis, Shari A

    2015-03-17

    Brominated very short-lived substances (BrVSLS), such as bromoform, are important trace gases for stratospheric ozone chemistry. These naturally derived trace gases are formed via bromoperoxidase-mediated halogenation of dissolved organic matter (DOM) in seawater. Information on DOM type in relation to the observed BrVSLS concentrations in seawater, however, is scarce. We examined the sensitivity of BrVSLS production in relation to the presence of specific DOM moieties. A total of 28 model DOM compounds in artificial seawater were treated with vanadium bromoperoxidase (V-BrPO). Our results show a clear dependence of BrVSLS production on DOM type. In general, molecules that comprise a large fraction of the bulk DOM pool did not noticeably affect BrVSLS production. Only specific cell metabolites and humic acid appeared to significantly enhance BrVSLS production. Amino acids and lignin phenols suppressed enzyme-mediated BrVSLS production and may instead have formed halogenated nonvolatile molecules. Dibromomethane production was not observed in any experiments, suggesting it is not produced by the same pathway as the other BrVSLS. Our results suggest that regional differences in DOM composition may explain the observed BrVSLS concentration variability in the global ocean. Ultimately, BrVSLS production and concentrations are likely affected by DOM composition, reactivity, and cycling in the ocean. PMID:25723123

  19. Bioactivity of volatile organic compounds produced by Pseudomonas tolaasii

    PubMed Central

    Lo Cantore, Pietro; Giorgio, Annalisa; Iacobellis, Nicola S.

    2015-01-01

    Pseudomonas tolaasii is the main bacterial pathogen of several mushroom species. In this paper we report that strains of P. tolaasii produce volatile substances inducing in vitro mycelia growth inhibition of Pleurotus ostreatus and P. eryngii, and Agaricus bisporus and P. ostreatus basidiome tissue blocks brown discoloration. P. tolaasii strains produced the volatile ammonia but not hydrogen cyanide. Among the volatiles detected by GC–MS, methanethiol, dimethyl disulfide (DMDS), and 1-undecene were identified. The latter, when assayed individually as pure compounds, led to similar effects noticed when P. tolaasii volatiles natural blend was used on mushrooms mycelia and basidiome tissue blocks. Furthermore, the natural volatile mixture resulted toxic toward lettuce and broccoli seedling growth. In contrast, pure volatiles showed different activity according to their nature and/or doses applied. Indeed, methanethiol resulted toxic at all the doses used, while DMDS toxicity was assessed till a quantity of 1.25 μg, below which it caused, together with 1-undecene (≥10 μg), broccoli growth increase. PMID:26500627

  20. Bioactivity of volatile organic compounds produced by Pseudomonas tolaasii.

    PubMed

    Lo Cantore, Pietro; Giorgio, Annalisa; Iacobellis, Nicola S

    2015-01-01

    Pseudomonas tolaasii is the main bacterial pathogen of several mushroom species. In this paper we report that strains of P. tolaasii produce volatile substances inducing in vitro mycelia growth inhibition of Pleurotus ostreatus and P. eryngii, and Agaricus bisporus and P. ostreatus basidiome tissue blocks brown discoloration. P. tolaasii strains produced the volatile ammonia but not hydrogen cyanide. Among the volatiles detected by GC-MS, methanethiol, dimethyl disulfide (DMDS), and 1-undecene were identified. The latter, when assayed individually as pure compounds, led to similar effects noticed when P. tolaasii volatiles natural blend was used on mushrooms mycelia and basidiome tissue blocks. Furthermore, the natural volatile mixture resulted toxic toward lettuce and broccoli seedling growth. In contrast, pure volatiles showed different activity according to their nature and/or doses applied. Indeed, methanethiol resulted toxic at all the doses used, while DMDS toxicity was assessed till a quantity of 1.25 ?g, below which it caused, together with 1-undecene (?10 ?g), broccoli growth increase. PMID:26500627

  1. Toward mass producible ordered bulk heterojunction organic photovoltaic devices.

    PubMed

    Kim, Taeyong; Yoon, Hyunsik; Song, Hyung-Jun; Haberkorn, Niko; Cho, Younghyun; Sung, Seung Hyun; Lee, Chang Hee; Char, Kookheon; Theato, Patrick

    2012-12-13

    A strategy to fabricate nanostructured poly(3-hexylthiophene) (P3HT) films for organic photovoltaic (OPV) cells by a direct transfer method from a reusable soft replica mold is presented. The flexible polyfluoropolyether (PFPE) replica mold allows low-pressure and low- temperature process condition for the successful transfer of nanostructured P3HT films onto PEDOT/PSS-coated ITO substrates. To reduce the fabrication cost of masters in large area, we employed well-ordered anodic aluminum oxide (AAO) as a template. Also, we provide a method to fabricate reversed nanostructures by exploiting the self-replication of replica molds. The concept of the transfer method in low temperature with a flexible and reusable replica mold obtained from an AAO template will be a firm foundation for a low-cost fabrication process of ordered OPVs. PMID:22991077

  2. Use of standardized patients to teach medical students about living organ donation.

    PubMed

    Bramstedt, Katrina A; Moolla, Ariff; Rehfield, Patricia L

    2012-03-01

    Educators routinely use standardized patients to teach medical students a variety of clinical concepts. Standardized patients have also been used to teach students about medical ethics and deceased organ donation. Not reported before, however, is the use of standardized patients to educate medical students about the ethical issues in living organ donation. It seems important to fill this gap because in the United States, roughly 45% of organ donors are living donors, and these patients will visit physicians throughout their lifespan, not just with the occurrence of donation. This article reports an experience teaching concepts in living donation and transplant ethics to second-year osteopathic medicine students using a standardized patient and supplementary instructional materials (eg, film, panel discussion, reading list). Specifically, a transplant ethics module was created that included an actor portraying a living donor candidate who had a number of case variables pertaining to medical and psychosocial matters. Instructional themes included informed consent, altruism, patient selection criteria, organ vending, and post-donation support systems. PMID:22489448

  3. 9 CFR 103.2 - Disposition of animals administered experimental biological products or live organisms.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Disposition of animals administered experimental biological products or live organisms. 103.2 Section 103.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND...

  4. 9 CFR 103.2 - Disposition of animals administered experimental biological products or live organisms.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Disposition of animals administered experimental biological products or live organisms. 103.2 Section 103.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND...

  5. 9 CFR 103.2 - Disposition of animals administered experimental biological products or live organisms.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Disposition of animals administered experimental biological products or live organisms. 103.2 Section 103.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND...

  6. 9 CFR 103.2 - Disposition of animals administered experimental biological products or live organisms.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false Disposition of animals administered experimental biological products or live organisms. 103.2 Section 103.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND...

  7. Making Nature's Wisdom Public: The Affirmation of Planet Earth as a Living Organism.

    ERIC Educational Resources Information Center

    Cohen, Michael J.

    Planet Earth is a living organism that preserves and regenerates itself and shares information with humans through sensations, feelings, and actions. After early humans migrated from their tropical origins to colder climates, they developed technologies to impose their tropical memories on their new surroundings and lost touch with their ancient…

  8. The Patentability of Living Organisms under 35 U.S.C. Section 101: In re Bergy.

    ERIC Educational Resources Information Center

    Harvard Law Review, 1978

    1978-01-01

    Examined is the In re Bergy decision in which a divided United States Court of Customs and Patent Appeals held that a living micro-organism was patentable under section 101 of the United States Code. Differing views and problems with the decision are also discussed. (JMD)

  9. Primordial Follicle Transplantation within Designer Biomaterial Grafts Produce Live Births in a Mouse Infertility Model.

    PubMed

    Kniazeva, E; Hardy, A N; Boukaidi, S A; Woodruff, T K; Jeruss, J S; Shea, L D

    2015-01-01

    The gonadotoxic effects of chemotherapy and radiation may result in premature ovarian failure in premenopausal oncology patients. Although autotransplantation of ovarian tissue has led to successful live births, reintroduction of latent malignant cells inducing relapse is a significant concern. In this report, we investigated the design of biomaterial grafts for transplantation of isolated ovarian follicles as a means to preserve fertility. Primordial and primary ovarian follicles from young female mice were extracted and encapsulated into biomaterials for subsequent transplantation into adult mice. Among the formulations tested, aggregated follicles encapsulated within fibrin had enhanced survival and integration with the host tissue following transplantation relative to the fibrin-alginate and fibrin-collagen composites. All mice transplanted with fibrin-encapsulated follicles resumed cycling, and live births were achieved only for follicles transplanted within VEGF-loaded fibrin beads. The extent to which these procedures reduce the presence of metastatic breast cancer cells among the isolated follicles was evaluated, with significantly reduced numbers of cancer cells present relative to intact ovaries. This ability to obtain live births by transplanting isolated primordial and primary follicles, while also reducing the risk of re-seeding disease relative to ovarian tissue transplantation, may ultimately provide a means to preserve fertility in premenopausal oncology patients. PMID:26633657

  10. Primordial Follicle Transplantation within Designer Biomaterial Grafts Produce Live Births in a Mouse Infertility Model

    PubMed Central

    Kniazeva, E.; Hardy, A. N.; Boukaidi, S. A.; Woodruff, T. K.; Jeruss, J. S.; Shea, L. D.

    2015-01-01

    The gonadotoxic effects of chemotherapy and radiation may result in premature ovarian failure in premenopausal oncology patients. Although autotransplantation of ovarian tissue has led to successful live births, reintroduction of latent malignant cells inducing relapse is a significant concern. In this report, we investigated the design of biomaterial grafts for transplantation of isolated ovarian follicles as a means to preserve fertility. Primordial and primary ovarian follicles from young female mice were extracted and encapsulated into biomaterials for subsequent transplantation into adult mice. Among the formulations tested, aggregated follicles encapsulated within fibrin had enhanced survival and integration with the host tissue following transplantation relative to the fibrin-alginate and fibrin-collagen composites. All mice transplanted with fibrin-encapsulated follicles resumed cycling, and live births were achieved only for follicles transplanted within VEGF-loaded fibrin beads. The extent to which these procedures reduce the presence of metastatic breast cancer cells among the isolated follicles was evaluated, with significantly reduced numbers of cancer cells present relative to intact ovaries. This ability to obtain live births by transplanting isolated primordial and primary follicles, while also reducing the risk of re-seeding disease relative to ovarian tissue transplantation, may ultimately provide a means to preserve fertility in premenopausal oncology patients. PMID:26633657

  11. Carbon deposition apparatus to produce long-lived stripper foils for the JAERI 20 MV tandem accelerator

    NASA Astrophysics Data System (ADS)

    Takeuchi, Suehiro; Kanazawa, Shuhei

    1982-06-01

    A carbon deposition apparatus has been developed to supply a large number of long-lived stripper foils to the JAERI 20 MV tandem accelerator. The apparatus can depdeposit thin films of nickel chloride release agent and arc emitted carbon on 25 glass substrates in one deposition cycle. Considerations in the design and fabrication are described. Lifetime tests of produced carbon foils by using heavy ion beams are reported in addition to performance tests of the apparatus.

  12. Biosecurity risks associated with current identification practices of producers trading live pigs at livestock sales.

    PubMed

    Hernández-Jover, M; Schembri, N; Toribio, J-A L M L; Holyoake, P K

    2008-11-01

    Approximately 5% of pigs produced in Australia is believed to be traded at livestock sales. Interviews and focus group discussions were conducted with producers (106 and 30 producers, respectively), who traded pigs at livestock sales. The purpose of the study was to gather information on how producers identified their pigs in order to evaluate how these practices may impact the ability to trace pig movements in the event of an emergency animal disease outbreak or food safety hazard. Results were analyzed according to herd size (0 to 150 sows, 150+ sows) and location (peri-urban, regional) as prior studies suggested a higher biosecurity risk among smaller farms and due to perceptions that peri-urban farms pose additional risk. Most producers (91.5%) had less than 150 sows and a high proportion (70.8%) resided in regional areas compared with only 29.2% residing in peri-urban areas. A higher proportion of large-scale producers identified their pigs than small-scale producers. A third of small-scale producers reported not identifying breeding stock and most did not identify progeny. The most common forms of on-farm identification used were ear tags for breeding stock and ear notches for progeny. Producers identified breeding stock to assist with mating management and genetic improvement. Ear notches were used to determine the litter of origin of progeny. All large-scale producers owned a registered swine brand and used the official body tattoo for post-farm-gate identification. However, approximately 15% of small-scale producers did not own a registered swine brand, and an additional 8% did not identify their pigs post-farm-gate. Producers were satisfied with tattoos as a methodology for post-farm-gate identification of pigs and considered other methodologies cost-prohibitive. However, variations in the maintenance of the branding equipment, the type of ink used and the time of tattoo application in relation to the animal sale were highlighted during focus group discussions. These results suggest that there is a need for education and extension activities, especially among small-scale pig producers, regarding the benefits of identifying animals on-farm. In addition, increased awareness of the traceability legislation that exists in Australia to meet the National Performance Standards for Livestock Traceability in this country is required. PMID:22444022

  13. Biogeochemical Processes That Produce Dissolved Organic Matter From Wheat Straw

    USGS Publications Warehouse

    Wershaw, Robert L.; Rutherford, David W.; Leenheer, Jerry A.; Kennedy, Kay R.; Cox, Larry G.; Koci, Donald R.

    2003-01-01

    The chemical reactions that lead to the formation of dissolved organic matter (DOM) in natural waters are poorly understood. Studies on the formation of DOM generally are complicated because almost all DOM isolates have been derived from mixtures of plant species composed of a wide variety of different types of precursor compounds for DOM formation. This report describes a study of DOM derived mainly from bales of wheat straw that had been left in a field for several years. During this period of time, black water from the decomposing wheat straw accumulated in pools in the field. The nuclear magnetic resonance and infrared spectra of the black water DOM indicate that it is composed almost entirely of lignin and carbohydrate polymeric units. Analysis by high-performance size-exclusion chromatography with multi-angle laser-light scattering detection indicates that the number average molecular weight of the DOM is 124,000 daltons. The results presented in this report indicate that the black water DOM is composed of hemicellulose chains cross-linked to lignin oligomers. These types of structures have been shown to exist in the hemicellulose matrix of plant cell walls. The cross-linked lignin-hemicellulose complexes apparently were released from partially degraded wheat-straw cell walls with little alteration. In solution in the black water, these lignin-hemicellulose polymers fold into compact globular particles in which the nonpolar parts of the polymer form the interiors of the particles and the polar groups are on the exterior surfaces of the particles. The tightly folded, compact conformation of these particles probably renders them relatively resistant to microbial degradation. This should be especially the case for the aromatic lignin structures that will be buried in the interiors of the particles.

  14. Wind Shear May Produce Long-Lived Storms and Squall Lines on Titan

    NASA Astrophysics Data System (ADS)

    Rafkin, S.; Barth, E.

    2015-10-01

    The impact of CAPE and wind shear on storms in a Titan-like environment are explored through numerical simulation. Model results indicate that Titan storms should respond to changes in the Richardson Number. Very long-lived storms (>24hours) propagating for 1000 km or more might be possible. Varying amounts of shear in the Titan environment might explain the variety of convective cloud expressions identified in Cassini orbiter and ground-based observations. The resulting distribution and magnitude of precipitation as well as surface winds associated with storms have implications on the formation of fluvial and aeolian features and on the exchange of methane with the surface and lakes.

  15. A comparison of organic and conventional fresh produce buyers in the Boston area.

    PubMed

    Williams, P R; Hammitt, J K

    2000-10-01

    Food safety concerns and the demand for organically grown produce have increased significantly in the United States over the last decade. Key differences in lifestyle characteristics, food safety attitudes and beliefs, perceived food safety risks, and valuation of health risk reductions between organic and conventional food buyers remain largely unknown, however. To better characterize how buyers of organic fresh produce differ from their conventional counterparts, over 700 food shoppers were sampled from ten major retail stores in the Boston area. Survey results show that self-reported organic buyers are more likely than conventional buyers to engage in a variety of health-promoting and environmentally friendly behaviors. Organic buyers are less trusting of federal food safety agencies than are conventional buyers, and perceive greater benefits associated with organically grown produce than do their conventional counterparts. Further, organic buyers have significantly higher risk perceptions than do conventional buyers for food safety hazards associated with conventionally grown produce. Compared to conventional buyers, organic produce buyers also perceive significant risk reductions associated with switching to organically grown produce and are willing to pay a higher price to reduce perceived food safety risks. Few sociodemographic differences between buyer types were observed, possibly due to how organic and conventional food stores were matched. Survey findings highlight the need for greater public education about a range of food safety issues and farming practices to ensure that consumers are making informed decisions in the marketplace. PMID:11110219

  16. Imposing options on people in poverty: the harm of a live donor organ market.

    PubMed

    Rippon, Simon

    2014-03-01

    A prominent defence of a market in organs from living donors says that if we truly care about people in poverty, we should allow them to sell their organs. The argument is that if poor vendors would have voluntarily decided to sell their organs in a free market, then prohibiting them from selling makes them even worse off, at least from their own perspective, and that it would be unconscionably paternalistic to substitute our judgements for individuals' own judgements about what would be best for them. The author shows that this 'Laissez-Choisir Argument' for organ selling rests on a mistake. This is because the claim that it would be better for people in poverty to sell their organs if given the option is consistent with the claim that it would be even better for them to not have the option at all. The upshot is that objections to an organ market need not be at all paternalistic, since we need not accept that the absence of a market makes those in poverty any worse off, even from their own point of view. The author goes on to argue that there are strong theoretical and empirical reasons for believing that people in poverty would in fact be harmed by the introduction of a market for live donor organs and that the harm constitutes sufficient grounds for prohibiting a market. PMID:22745109

  17. Live Leishmania promastigotes can directly activate primary human natural killer cells to produce interferon-gamma

    PubMed Central

    Nylén, S; Maasho, K; Söderström, K; Ilg, T; Akuffo, H

    2003-01-01

    Natural killer (NK) cells have been implicated in the natural protection and healing of leishmaniasis by their ability to secrete the macrophage activating cytokine interferon (IFN)γ. Previous studies have demonstrated that early production of interleukin (IL)-12 triggers IFNγ secretion by NK cells. Here we report that live Leishmania promastigotes (the form that is injected by the vector) can directly induce human peripheral blood NK cells from healthy donors to IFNγ secretion in the absence of IL-12 and professional antigen presenting cells. Killing of promastigotes abolishes this property. This novel mechanism of activation of the innate immune response may be relevant for establishment of infection and thus also the design of vaccines against leishmaniasis. PMID:12605699

  18. Live Births from Domestic Dog (Canis familiaris) Embryos Produced by In Vitro Fertilization

    PubMed Central

    Nagashima, Jennifer B.; Sylvester, Skylar R.; Nelson, Jacquelyn L.; Cheong, Soon Hon; Mukai, Chinatsu; Lambo, Colleen; Flanders, James A.; Meyers-Wallen, Vicki N.; Songsasen, Nucharin; Travis, Alexander J.

    2015-01-01

    Development of assisted reproductive technologies (ART) in the dog has resisted progress for decades, due to their unique reproductive physiology. This lack of progress is remarkable given the critical role ART could play in conserving endangered canid species or eradicating heritable disease through gene-editing technologies—an approach that would also advance the dog as a biomedical model. Over 350 heritable disorders/traits in dogs are homologous with human conditions, almost twice the number of any other species. Here we report the first live births from in vitro fertilized embryos in the dog. Adding to the practical significance, these embryos had also been cryopreserved. Changes in handling of both gametes enabled this progress. The medium previously used to capacitate sperm excluded magnesium because it delayed spontaneous acrosome exocytosis. We found that magnesium significantly enhanced sperm hyperactivation and ability to undergo physiologically-induced acrosome exocytosis, two functions essential to fertilize an egg. Unlike other mammals, dogs ovulate a primary oocyte, which reaches metaphase II on Days 4–5 after the luteinizing hormone (LH) surge. We found that only on Day 6 are oocytes consistently able to be fertilized. In vitro fertilization of Day 6 oocytes with sperm capacitated in medium supplemented with magnesium resulted in high rates of embryo development (78.8%, n = 146). Intra-oviductal transfer of nineteen cryopreserved, in vitro fertilization (IVF)-derived embryos resulted in seven live, healthy puppies. Development of IVF enables modern genetic approaches to be applied more efficiently in dogs, and for gamete rescue to conserve endangered canid species. PMID:26650234

  19. Method and apparatus for simulating gravitational forces on a living organism

    NASA Technical Reports Server (NTRS)

    Thornton, W. E. (Inventor)

    1983-01-01

    A method and apparatus for simulating gravitational forces on a living organism wherein a series of negative pressures are externally applied to successive length-wise sections of a lower limb of the organism. The pressures decreasing progressively with distance of said limb sections from the heart of the organism. A casing defines a chamber adapted to contain the limb of the organism and is rigidified to resist collapse upon the application of negative pressures to the interior of the chamber. Seals extend inwardly from the casing for effective engagement with the limb of the organism and, in cooperation with the limb, subdivide the chamber into a plurality of compartments each in negative pressure communicating relation with the limb.

  20. Why and how to compensate living organ donors: ethical implications of the new Australian scheme.

    PubMed

    Giubilini, Alberto

    2015-05-01

    The Australian Federal Government has announced a two-year trial scheme to compensate living organ donors. The compensation will be the equivalent of six weeks paid leave at the rate of the national minimum wage. In this article I analyse the ethics of compensating living organ donors taking the Australian scheme as a reference point. Considering the long waiting lists for organ transplantations and the related costs on the healthcare system of treating patients waiting for an organ, the 1.3 million AUD the Australian Government has committed might represent a very worthwhile investment. I argue that a scheme like the Australian one is sufficiently well designed to avoid all the ethical problems traditionally associated with attaching a monetary value to the human body or to parts of it, namely commodification, inducement, exploitation, and equality issues. Therefore, I suggest that the Australian scheme, if cost-effective, should represent a model for other countries to follow. Nonetheless, although I endorse this scheme, I will also argue that this kind of scheme raises issues of justice in regard to the distribution of organs. Thus, I propose that other policies would be needed to supplement the scheme in order to guarantee not only a higher number of organs available, but also a fair distribution. PMID:24654885

  1. Organic Compounds in Produced Waters From Coalbed Methane Wells in the Powder River Basin, WY

    NASA Astrophysics Data System (ADS)

    Orem, W.; Lerch, H.; Rice, C.; Tatu, C.

    2003-12-01

    Coalbed methane (CBM) is a significant energy resource, accounting for about 7.5% of natural gas production in the USA. The Powder River Basin (PRB), WY is currently one of the most active CBM drilling sites in the USA. One aspect of concern in the exploitation of CBM resources is the large volumes of water recovered from wells along with the natural gas (so-called produced waters). CBM produced waters may contain coal-derived dissolved substances (inorganic and organic) of environmental concern, and a potential disposal problem for CBM producers. Studies of CBM produced water have mostly focused on inorganics. Dissolved organic compounds in CBM produced water may also present an environmental issue, but little information is available. As part of a larger study of the health and environmental effects of organic compounds derived from coal, we analyzed a number of produced water samples from CBM wells in the PRB, WY for dissolved organic substances. Our goals were results on coal-derived organic compounds in the environment to evaluate potential health and environmental impacts. In 2001, we sampled produced water from 13 CBM wells covering a broad area of the PRB in order to identify and quantify the organic compounds present. In 2002, produced water from 4 of the 2001 CBM wells and 8 new CBM wells were sampled for dissolved organic components. Produced water was collected directly from each well and filtered on site. Organic compounds were isolated from produced water samples by liquid/liquid extraction with methylene chloride and identified and quantified by gas chromatography/mass spectrometry (GC/MS). Organic compounds identified by GC/MS in extracts of the produced water samples, included: phenols, biphenyls, N-, O-, and S-containing heterocyclic compounds, polycyclic aromatic hydrocarbons, phthalates, aliphatic hydrocarbons, and fatty acids. However, most compounds had structures unidentified by GC/MS databases. Many of the identified organic compounds (phenols, heterocyclic compounds, polycyclic aromatic hydrocarbons) are likely coal-derived. Concentrations of individual compounds ranged from about 10 to 0.01 ? g/l. Some CBM wells with high concentrations of dissolved organic compounds present in 2001 had much lower concentrations in 2002, indicating temporal variability. Some of the organic compounds identified in the produced water samples are toxic (mutagenic and cancer promoters), but are unlikely to have acute health effects at the low levels present. Chronic health and environmental effects from long periods of low-level exposure, however, are possible. Continuing studies will expand the existing dataset on dissolved organic compounds in produced water, and evaluate the toxic effects of these compounds.

  2. Organic livestock production: an emerging opportunity with new challenges for producers in tropical countries.

    PubMed

    Chander, M; Subrahmanyeswari, B; Mukherjee, R; Kumar, S

    2011-12-01

    Agrochemicals, veterinary drugs, antibiotics and improved feeds can increase the food supply while minimising production costs in various livestock production systems around the world. However, these days, quality-conscious consumers are increasingly seeking environmentally safe, chemical-residue-free healthy foods, along with product traceability and a high standard of animal welfare, which organic production methods are said to ensure. Organic production is not only a challenge for producers in developing countries, it offers new export opportunities as well. Organic agriculture is practised by 1.8 million producers in 160 countries, and production of organically grown food continues to increase steadily by 15% per year. Most tropical countries are now exporting organic agricultural products but, apart from organic beef from Brazil and Argentina, organic livestock products are yetto take off. Most trade in organic livestock products is restricted to the European Union and other developed nations. Nevertheless, tropical countries cannot afford to neglect this emerging system of animal production. Organic production is knowledge- and management-intensive. Producers must be well versed in organic production standards, principles and practices, which require a high degree of knowledge and skill. In organic production, it is not simply the final product but the whole production process that must be inspected and approved by the accredited certification bodies. Organic livestock farming is still evolving, and further research is needed to make it sustainable. In this paper, the authors review the prospects of organic animal husbandry and its possible constraints in developing and tropical countries. PMID:22435208

  3. Spray deposition of live cells throughout the electrospinning process produces nanofibrous three-dimensional tissue scaffolds

    PubMed Central

    Seil, Justin T; Webster, Thomas J

    2011-01-01

    Compared with traditional in-vitro cell culture materials, three-dimensional nanofibrous scaffolds provide a superior environment for promoting cell functions. Since nanofibrous scaffolds have nanometer pore sizes, cells are unable to penetrate on their own, so must be incorporated into the scaffold during fabrication to ensure proper cell distribution. In this study, biodegradable and cytocompatible poly(DL-lactide-co-glycolide) (PLGA) nanofibers were produced using an electrospinning process. As a model cell line, fibroblasts were periodically sprayed from a pump-action spray bottle onto the developing scaffold. The viability of cells before and after spraying, and also after incorporation into the scaffold, was compared. Results indicated that cell spraying and the scaffold fabrication process did not significantly reduce cell viability. These findings, thus, contribute to the understanding of how to produce more physiological relevant cell-seeded nanofibrous scaffolds, an important element for the future of nanotechnology and tissue engineering. PMID:21698076

  4. 77 FR 33969 - Standards for Living Organisms in Ships' Ballast Water Discharged in U.S. Waters

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-08

    ... FR 17254), entitled ``Standards for Living Organisms in Ships' Ballast Water Discharged in U.S... March 23, 2012 (77 FR 17254), entitled ``Standards for Living Organisms in Ships' Ballast Water... Standards Directorate''. Notification should be provided to U.S. Coast Guard Marine Safety Center. In FR...

  5. Probing the Dynamic Organization of Transcription Compartments and Gene Loci within the Nucleus of Living Cells

    PubMed Central

    Sinha, Deepak Kumar; Banerjee, Bidisha; Maharana, Shovamayee; Shivashankar, G. V.

    2008-01-01

    The three-dimensional organization of nuclear compartments within living cells determines genome function and yet their underlying self-organizing principles are unclear. We visualize in real-time transcriptionally active compartments (TCs) by the transient enrichment of fluorescently-labeled uridine 5?-triphosphate molecules within living cells. These TCs partially colocalize with active RNA-Pol II in the cell nucleus. Fluorescence anisotropy maps of chromatin compaction evidences a more open chromatin structure at the TCs. Using live-cell timelapse imaging, heterogeneity in the dynamic behavior of TCs has been revealed which falls into three distinct classes: subdiffusive, super-diffusive, and normal diffusive behavior. In contrast, the mobility of a candidate gene locus, either in the repressed or activated state, undergoes a differential restricted motion that is coupled to TC movement. Further TC dynamics is directly affected by small molecule chromatin structure modulators and adenosine triphosphate depletion. This heterogeneous behavior in TC dynamics within living cells could provide an interesting paradigm to explore the spatiotemporal dimension to gene transcription control. PMID:18805931

  6. Search for decays of stopped long-lived particles produced in proton-proton collisions at

    NASA Astrophysics Data System (ADS)

    Khachatryan, V.; Sirunyan, A. M.; Tumasyan, A.; Adam, W.; Bergauer, T.; Dragicevic, M.; Erö, J.; Friedl, M.; Frühwirth, R.; Ghete, V. M.; Hartl, C.; Hörmann, N.; Hrubec, J.; Jeitler, M.; Kiesenhofer, W.; Knünz, V.; Krammer, M.; Krätschmer, I.; Liko, D.; Mikulec, I.; Rabady, D.; Rahbaran, B.; Rohringer, H.; Schöfbeck, R.; Strauss, J.; Treberer-Treberspurg, W.; Waltenberger, W.; Wulz, C.-E.; Mossolov, V.; Shumeiko, N.; Suarez Gonzalez, J.; Alderweireldt, S.; Bansal, S.; Cornelis, T.; De Wolf, E. A.; Janssen, X.; Knutsson, A.; Lauwers, J.; Luyckx, S.; Ochesanu, S.; Rougny, R.; Van De Klundert, M.; Van Haevermaet, H.; Van Mechelen, P.; Van Remortel, N.; Van Spilbeeck, A.; Blekman, F.; Blyweert, S.; D'Hondt, J.; Daci, N.; Heracleous, N.; Keaveney, J.; Lowette, S.; Maes, M.; Olbrechts, A.; Python, Q.; Strom, D.; Tavernier, S.; Van Doninck, W.; Van Mulders, P.; Van Onsem, G. P.; Villella, I.; Caillol, C.; Clerbaux, B.; De Lentdecker, G.; Dobur, D.; Favart, L.; Gay, A. P. 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A.; Sonnenschein, L.; Teyssier, D.; Thüer, S.; Weber, M.; Cherepanov, V.; Erdogan, Y.; Flügge, G.; Geenen, H.; Geisler, M.; Haj Ahmad, W.; Hoehle, F.; Kargoll, B.; Kress, T.; Kuessel, Y.; Künsken, A.; Lingemann, J.; Nowack, A.; Nugent, I. M.; Pooth, O.; Stahl, A.; Aldaya Martin, M.; Asin, I.; Bartosik, N.; Behr, J.; Behrens, U.; Bell, A. J.; Bethani, A.; Borras, K.; Burgmeier, A.; Cakir, A.; Calligaris, L.; Campbell, A.; Choudhury, S.; Costanza, F.; Diez Pardos, C.; Dolinska, G.; Dooling, S.; Dorland, T.; Eckerlin, G.; Eckstein, D.; Eichhorn, T.; Flucke, G.; Garcia, J. Garay; Geiser, A.; Gunnellini, P.; Hauk, J.; Hempel, M.; Jung, H.; Kalogeropoulos, A.; Karacheban, O.; Kasemann, M.; Katsas, P.; Kieseler, J.; Kleinwort, C.; Korol, I.; Krücker, D.; Lange, W.; Leonard, J.; Lipka, K.; Lobanov, A.; Lohmann, W.; Lutz, B.; Mankel, R.; Marfin, I.; Melzer-Pellmann, I.-A.; Meyer, A. B.; Mittag, G.; Mnich, J.; Mussgiller, A.; Naumann-Emme, S.; Nayak, A.; Ntomari, E.; Perrey, H.; Pitzl, D.; Placakyte, R.; Raspereza, A.; Ribeiro Cipriano, P. M.; Roland, B.; Ron, E.; Sahin, M. Ö.; Salfeld-Nebgen, J.; Saxena, P.; Schoerner-Sadenius, T.; Schröder, M.; Seitz, C.; Spannagel, S.; Vargas Trevino, A. D. R.; Walsh, R.; Wissing, C.; Blobel, V.; Centis Vignali, M.; Draeger, A. R.; Erfle, J.; Garutti, E.; Goebel, K.; Görner, M.; Haller, J.; Hoffmann, M.; Höing, R. S.; Junkes, A.; Kirschenmann, H.; Klanner, R.; Kogler, R.; Lange, J.; Lapsien, T.; Lenz, T.; Marchesini, I.; Ott, J.; Peiffer, T.; Perieanu, A.; Pietsch, N.; Poehlsen, J.; Poehlsen, T.; Rathjens, D.; Sander, C.; Schettler, H.; Schleper, P.; Schlieckau, E.; Schmidt, A.; Seidel, M.; Sola, V.; Stadie, H.; Steinbrück, G.; Troendle, D.; Usai, E.; Vanelderen, L.; Vanhoefer, A.; Barth, C.; Baus, C.; Berger, J.; Böser, C.; Butz, E.; Chwalek, T.; De Boer, W.; Descroix, A.; Dierlamm, A.; Feindt, M.; Frensch, F.; Giffels, M.; Gilbert, A.; Hartmann, F.; Hauth, T.; Husemann, U.; Katkov, I.; Kornmayer, A.; Kuznetsova, E.; Lobelle Pardo, P.; Mozer, M. U.; Müller, T.; Müller, Th.; Nürnberg, A.; Quast, G.; Rabbertz, K.; Röcker, S.; Simonis, H. J.; Stober, F. M.; Ulrich, R.; Wagner-Kuhr, J.; Wayand, S.; Weiler, T.; Wolf, R.; Anagnostou, G.; Daskalakis, G.; Geralis, T.; Giakoumopoulou, V. A.; Kyriakis, A.; Loukas, D.; Markou, A.; Markou, C.; Psallidas, A.; Topsis-Giotis, I.; Agapitos, A.; Kesisoglou, S.; Panagiotou, A.; Saoulidou, N.; Stiliaris, E.; Aslanoglou, X.; Evangelou, I.; Flouris, G.; Foudas, C.; Kokkas, P.; Manthos, N.; Papadopoulos, I.; Paradas, E.; Strologas, J.; Bencze, G.; Hajdu, C.; Hidas, P.; Horvath, D.; Sikler, F.; Veszpremi, V.; Vesztergombi, G.; Zsigmond, A. J.; Beni, N.; Czellar, S.; Karancsi, J.; Molnar, J.; Palinkas, J.; Szillasi, Z.; Makovec, A.; Raics, P.; Trocsanyi, Z. L.; Ujvari, B.; Swain, S. K.; Beri, S. B.; Bhatnagar, V.; Gupta, R.; Bhawandeep, U.; Kalsi, A. K.; Kaur, M.; Kumar, R.; Mittal, M.; Nishu, N.; Singh, J. B.; Kumar, Ashok; Kumar, Arun; Ahuja, S.; Bhardwaj, A.; Choudhary, B. C.; Kumar, A.; Malhotra, S.; Naimuddin, M.; Ranjan, K.; Sharma, V.; Banerjee, S.; Bhattacharya, S.; Chatterjee, K.; Dutta, S.; Gomber, B.; Jain, Sa.; Jain, Sh.; Khurana, R.; Modak, A.; Mukherjee, S.; Roy, D.; Sarkar, S.; Sharan, M.; Abdulsalam, A.; Dutta, D.; Kumar, V.; Mohanty, A. K.; Pant, L. M.; Shukla, P.; Topkar, A.; Aziz, T.; Banerjee, S.; Bhowmik, S.; Chatterjee, R. M.; Dewanjee, R. K.; Dugad, S.; Ganguly, S.; Ghosh, S.; Guchait, M.; Gurtu, A.; Kole, G.; Kumar, S.; Maity, M.; Majumder, G.; Mazumdar, K.; Mohanty, G. B.; Parida, B.; Sudhakar, K.; Wickramage, N.; Bakhshiansohi, H.; Behnamian, H.; Etesami, S. M.; Fahim, A.; Goldouzian, R.; Khakzad, M.; Mohammadi Najafabadi, M.; Naseri, M.; Paktinat Mehdiabadi, S.; Rezaei Hosseinabadi, F.; Safarzadeh, B.; Zeinali, M.; Felcini, M.; Grunewald, M.; Abbrescia, M.; Calabria, C.; Chhibra, S. S.; Colaleo, A.; Creanza, D.; De Filippis, N.; De Palma, M.; Fiore, L.; Iaselli, G.; Maggi, G.; Maggi, M.; My, S.; Nuzzo, S.; Pompili, A.; Pugliese, G.; Radogna, R.; Selvaggi, G.; Sharma, A.; Silvestris, L.; Venditti, R.; Verwilligen, P.; Abbiendi, G.; Benvenuti, A. C.; Bonacorsi, D.; Braibant-Giacomelli, S.; Brigliadori, L.; Campanini, R.; Capiluppi, P.; Castro, A.; Cavallo, F. R.; Codispoti, G.; Cuffiani, M.; Dallavalle, G. M.; Fabbri, F.; Fanfani, A.; Fasanella, D.; Giacomelli, P.; Grandi, C.; Guiducci, L.; Marcellini, S.; Masetti, G.; Montanari, A.; Navarria, F. L.; Perrotta, A.; Rossi, A. M.; Primavera, F.; Rovelli, T.; Siroli, G. 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T.; Spagnolo, P.; Squillacioti, P.; Tenchini, R.; Tonelli, G.; Venturi, A.; Verdini, P. G.; Vernieri, C.; Barone, L.; Cavallari, F.; D'imperio, G.; Del Re, D.; Diemoz, M.; Jorda, C.; Longo, E.; Margaroli, F.; Meridiani, P.; Micheli, F.; Organtini, G.; Paramatti, R.; Rahatlou, S.; Rovelli, C.; Santanastasio, F.; Soffi, L.; Traczyk, P.; Amapane, N.; Arcidiacono, R.; Argiro, S.; Arneodo, M.; Bellan, R.; Biino, C.; Cartiglia, N.; Casasso, S.; Costa, M.; Degano, A.; Demaria, N.; Finco, L.; Mariotti, C.; Maselli, S.; Migliore, E.; Monaco, V.; Musich, M.; Obertino, M. M.; Pacher, L.; Pastrone, N.; Pelliccioni, M.; Pinna Angioni, G. L.; Potenza, A.; Romero, A.; Ruspa, M.; Sacchi, R.; Solano, A.; Staiano, A.; Tamponi, U.; Belforte, S.; Candelise, V.; Casarsa, M.; Cossutti, F.; Della Ricca, G.; Gobbo, B.; La Licata, C.; Marone, M.; Schizzi, A.; Umer, T.; Zanetti, A.; Chang, S.; Kropivnitskaya, T. A.; Nam, S. K.; Kim, D. H.; Kim, G. N.; Kim, M. S.; Kim, M. S.; Kong, D. J.; Lee, S.; Oh, Y. 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Ferreira; Gallinaro, M.; Lloret Iglesias, L.; Nguyen, F.; Rodrigues Antunes, J.; Seixas, J.; Varela, J.; Vischia, P.; Afanasiev, S.; Bunin, P.; Gavrilenko, M.; Golutvin, I.; Karjavin, V.; Konoplyanikov, V.; Kozlov, G.; Lanev, A.; Malakhov, A.; Matveev, V.; Moisenz, P.; Palichik, V.; Perelygin, V.; Savina, M.; Shmatov, S.; Shulha, S.; Smirnov, V.; Zarubin, A.; Golovtsov, V.; Ivanov, Y.; Kim, V.; Levchenko, P.; Murzin, V.; Oreshkin, V.; Smirnov, I.; Sulimov, V.; Uvarov, L.; Vavilov, S.; Vorobyev, A.; Vorobyev, An.; Andreev, Yu.; Dermenev, A.; Gninenko, S.; Golubev, N.; Kirsanov, M.; Krasnikov, N.; Pashenkov, A.; Tlisov, D.; Toropin, A.; Epshteyn, V.; Gavrilov, V.; Lychkovskaya, N.; Popov, V.; Pozdnyakov, I.; Safronov, G.; Semenov, S.; Spiridonov, A.; Stolin, V.; Vlasov, E.; Zhokin, A.; Andreev, V.; Azarkin, M.; Dremin, I.; Kirakosyan, M.; Leonidov, A.; Mesyats, G.; Rusakov, S. V.; Vinogradov, A.; Belyaev, A.; Boos, E.; Bunichev, V.; Dubinin, M.; Dudko, L.; Ershov, A.; Klyukhin, V.; Kodolova, O.; Lokhtin, I.; Obraztsov, S.; Petrushanko, S.; Savrin, V.; Snigirev, A.; Azhgirey, I.; Bayshev, I.; Bitioukov, S.; Kachanov, V.; Kalinin, A.; Konstantinov, D.; Krychkine, V.; Petrov, V.; Ryutin, R.; Sobol, A.; Tourtchanovitch, L.; Troshin, S.; Tyurin, N.; Uzunian, A.; Volkov, A.; Adzic, P.; Ekmedzic, M.; Milosevic, J.; Rekovic, V.; Alcaraz Maestre, J.; Battilana, C.; Calvo, E.; Cerrada, M.; Chamizo Llatas, M.; Colino, N.; De La Cruz, B.; Delgado Peris, A.; Domínguez Vázquez, D.; Escalante Del Valle, A.; Fernandez Bedoya, C.; Ramos, J. P. Fernández; Flix, J.; Fouz, M. C.; Garcia-Abia, P.; Gonzalez Lopez, O.; Goy Lopez, S.; Hernandez, J. M.; Josa, M. I.; Navarro De Martino, E.; Yzquierdo, A. Pérez-Calero; Puerta Pelayo, J.; Quintario Olmeda, A.; Redondo, I.; Romero, L.; Soares, M. S.; Albajar, C.; de Trocóniz, J. F.; Missiroli, M.; Moran, D.; Brun, H.; Cuevas, J.; Fernandez Menendez, J.; Folgueras, S.; Gonzalez Caballero, I.; Brochero Cifuentes, J. A.; Cabrillo, I. J.; Calderon, A.; Duarte Campderros, J.; Fernandez, M.; Gomez, G.; Graziano, A.; Lopez Virto, A.; Marco, J.; Marco, R.; Martinez Rivero, C.; Matorras, F.; Munoz Sanchez, F. J.; Piedra Gomez, J.; Rodrigo, T.; Rodríguez-Marrero, A. Y.; Ruiz-Jimeno, A.; Scodellaro, L.; Vila, I.; Vilar Cortabitarte, R.; Abbaneo, D.; Auffray, E.; Auzinger, G.; Bachtis, M.; Baillon, P.; Ball, A. H.; Barney, D.; Benaglia, A.; Bendavid, J.; Benhabib, L.; Benitez, J. F.; Bloch, P.; Bocci, A.; Bonato, A.; Bondu, O.; Botta, C.; Breuker, H.; Camporesi, T.; Cerminara, G.; Colafranceschi, S.; D'Alfonso, M.; d'Enterria, D.; Dabrowski, A.; David, A.; De Guio, F.; De Roeck, A.; De Visscher, S.; Di Marco, E.; Dobson, M.; Dordevic, M.; Dorney, B.; Dupont-Sagorin, N.; Elliott-Peisert, A.; Franzoni, G.; Funk, W.; Gigi, D.; Gill, K.; Giordano, D.; Girone, M.; Glege, F.; Guida, R.; Gundacker, S.; Guthoff, M.; Hammer, J.; Hansen, M.; Harris, P.; Hegeman, J.; Innocente, V.; Janot, P.; Kousouris, K.; Krajczar, K.; Lecoq, P.; Lourenço, C.; Magini, N.; Malgeri, L.; Mannelli, M.; Marrouche, J.; Masetti, L.; Meijers, F.; Mersi, S.; Meschi, E.; Moortgat, F.; Morovic, S.; Mulders, M.; Orsini, L.; Pape, L.; Perez, E.; Petrilli, A.; Petrucciani, G.; Pfeiffer, A.; Pimiä, M.; Piparo, D.; Plagge, M.; Racz, A.; Rolandi, G.; Rovere, M.; Sakulin, H.; Schäfer, C.; Schwick, C.; Sharma, A.; Siegrist, P.; Silva, P.; Simon, M.; Sphicas, P.; Spiga, D.; Steggemann, J.; Stieger, B.; Stoye, M.; Takahashi, Y.; Treille, D.; Tsirou, A.; Veres, G. I.; Wardle, N.; Wöhri, H. K.; Wollny, H.; Zeuner, W. D.; Bertl, W.; Deiters, K.; Erdmann, W.; Horisberger, R.; Ingram, Q.; Kaestli, H. C.; Kotlinski, D.; Langenegger, U.; Renker, D.; Rohe, T.; Bachmair, F.; Bäni, L.; Bianchini, L.; Buchmann, M. A.; Casal, B.; Chanon, N.; Dissertori, G.; Dittmar, M.; Donegà, M.; Dünser, M.; Eller, P.; Grab, C.; Hits, D.; Hoss, J.; Lustermann, W.; Mangano, B.; Marini, A. C.; Marionneau, M.; Martinez Ruiz del Arbol, P.; Masciovecchio, M.; Meister, D.; Mohr, N.; Musella, P.; Nägeli, C.; Nessi-Tedaldi, F.; Pandolfi, F.; Pauss, F.; Perrozzi, L.; Peruzzi, M.; Quittnat, M.; Rebane, L.; Rossini, M.; Starodumov, A.; Takahashi, M.; Theofilatos, K.; Wallny, R.; Weber, H. A.; Amsler, C.; Canelli, M. F.; Chiochia, V.; De Cosa, A.; Hinzmann, A.; Hreus, T.; Kilminster, B.; Lange, C.; Millan Mejias, B.; Ngadiuba, J.; Pinna, D.; Robmann, P.; Ronga, F. J.; Taroni, S.; Verzetti, M.; Yang, Y.; Cardaci, M.; Chen, K. H.; Ferro, C.; Kuo, C. M.; Lin, W.; Lu, Y. J.; Volpe, R.; Yu, S. S.; Chang, P.; Chang, Y. H.; Chang, Y. W.; Chao, Y.; Chen, K. F.; Chen, P. H.; Dietz, C.; Grundler, U.; Hou, W.-S.; Kao, K. Y.; Liu, Y. F.; Lu, R.-S.; Majumder, D.; Petrakou, E.; Tzeng, Y. M.; Wilken, R.; Asavapibhop, B.; Singh, G.; Srimanobhas, N.; Suwonjandee, N.; Adiguzel, A.; Bakirci, M. N.; Cerci, S.; Dozen, C.; Dumanoglu, I.; Eskut, E.; Girgis, S.; Gokbulut, G.; Guler, Y.; Gurpinar, E.; Hos, I.; Kangal, E. E.; Kayis Topaksu, A.; Onengut, G.; Ozdemir, K.; Ozturk, S.; Polatoz, A.; Sunar Cerci, D.; Tali, B.; Topakli, H.; Vergili, M.; Zorbilmez, C.; Akin, I. V.; Bilin, B.; Bilmis, S.; Gamsizkan, H.; Isildak, B.; Karapinar, G.; Ocalan, K.; Sekmen, S.; Surat, U. E.; Yalvac, M.; Zeyrek, M.; Albayrak, E. A.; Gülmez, E.; Kaya, M.; Kaya, O.; Yetkin, T.; Cankocak, K.; Vardarlı, F. I.; Levchuk, L.; Sorokin, P.; Brooke, J. J.; Clement, E.; Cussans, D.; Flacher, H.; Goldstein, J.; Grimes, M.; Heath, G. P.; Heath, H. F.; Jacob, J.; Kreczko, L.; Lucas, C.; Meng, Z.; Newbold, D. M.; Paramesvaran, S.; Poll, A.; Sakuma, T.; Seif El Nasr-storey, S.; Senkin, S.; Smith, V. J.; Bell, K. W.; Belyaev, A.; Brew, C.; Brown, R. M.; Cockerill, D. J. A.; Coughlan, J. A.; Harder, K.; Harper, S.; Olaiya, E.; Petyt, D.; Shepherd-Themistocleous, C. H.; Thea, A.; Tomalin, I. R.; Williams, T.; Womersley, W. J.; Worm, S. D.; Baber, M.; Bainbridge, R.; Buchmuller, O.; Burton, D.; Colling, D.; Cripps, N.; Dauncey, P.; Davies, G.; Della Negra, M.; Dunne, P.; Ferguson, W.; Fulcher, J.; Futyan, D.; Hall, G.; Iles, G.; Jarvis, M.; Karapostoli, G.; Kenzie, M.; Lane, R.; Lucas, R.; Lyons, L.; Magnan, A.-M.; Malik, S.; Mathias, B.; Nash, J.; Nikitenko, A.; Pela, J.; Pesaresi, M.; Petridis, K.; Raymond, D. M.; Rogerson, S.; Rose, A.; Seez, C.; Sharp, P.; Tapper, A.; Vazquez Acosta, M.; Virdee, T.; Zenz, S. C.; Cole, J. E.; Hobson, P. R.; Khan, A.; Kyberd, P.; Leggat, D.; Leslie, D.; Reid, I. D.; Symonds, P.; Teodorescu, L.; Turner, M.; Dittmann, J.; Hatakeyama, K.; Kasmi, A.; Liu, H.; Scarborough, T.; Charaf, O.; Cooper, S. I.; Henderson, C.; Rumerio, P.; Avetisyan, A.; Bose, T.; Fantasia, C.; Lawson, P.; Richardson, C.; Rohlf, J.; St. John, J.; Sulak, L.; Alimena, J.; Berry, E.; Bhattacharya, S.; Christopher, G.; Cutts, D.; Demiragli, Z.; Dhingra, N.; Ferapontov, A.; Garabedian, A.; Heintz, U.; Kukartsev, G.; Laird, E.; Landsberg, G.; Luk, M.; Narain, M.; Segala, M.; Sinthuprasith, T.; Speer, T.; Swanson, J.; Breedon, R.; Breto, G.; De La Barca Sanchez, M. Calderon; Chauhan, S.; Chertok, M.; Conway, J.; Conway, R.; Cox, P. T.; Erbacher, R.; Gardner, M.; Ko, W.; Lander, R.; Mulhearn, M.; Pellett, D.; Pilot, J.; Ricci-Tam, F.; Shalhout, S.; Smith, J.; Squires, M.; Stolp, D.; Tripathi, M.; Wilbur, S.; Yohay, R.; Cousins, R.; Everaerts, P.; Farrell, C.; Hauser, J.; Ignatenko, M.; Rakness, G.; Takasugi, E.; Valuev, V.; Weber, M.; Burt, K.; Clare, R.; Ellison, J.; Gary, J. W.; Hanson, G.; Heilman, J.; Ivova Rikova, M.; Jandir, P.; Kennedy, E.; Lacroix, F.; Long, O. R.; Luthra, A.; Malberti, M.; Negrete, M. Olmedo; Shrinivas, A.; Sumowidagdo, S.; Wimpenny, S.; Branson, J. G.; Cerati, G. B.; Cittolin, S.; D'Agnolo, R. T.; Holzner, A.; Kelley, R.; Klein, D.; Letts, J.; Macneill, I.; Olivito, D.; Padhi, S.; Palmer, C.; Pieri, M.; Sani, M.; Sharma, V.; Simon, S.; Tadel, M.; Tu, Y.; Vartak, A.; Welke, C.; Würthwein, F.; Yagil, A.; Barge, D.; Bradmiller-Feld, J.; Campagnari, C.; Danielson, T.; Dishaw, A.; Dutta, V.; Flowers, K.; Franco Sevilla, M.; Geffert, P.; George, C.; Golf, F.; Gouskos, L.; Incandela, J.; Justus, C.; Mccoll, N.; Richman, J.; Stuart, D.; To, W.; West, C.; Yoo, J.; Apresyan, A.; Bornheim, A.; Bunn, J.; Chen, Y.; Duarte, J.; Mott, A.; Newman, H. B.; Pena, C.; Pierini, M.; Spiropulu, M.; Vlimant, J. R.; Wilkinson, R.; Xie, S.; Zhu, R. Y.; Azzolini, V.; Calamba, A.; Carlson, B.; Ferguson, T.; Iiyama, Y.; Paulini, M.; Russ, J.; Vogel, H.; Vorobiev, I.; Cumalat, J. P.; Ford, W. T.; Gaz, A.; Krohn, M.; Luiggi Lopez, E.; Nauenberg, U.; Smith, J. G.; Stenson, K.; Wagner, S. R.; Alexander, J.; Chatterjee, A.; Chaves, J.; Chu, J.; Dittmer, S.; Eggert, N.; Mirman, N.; Nicolas Kaufman, G.; Patterson, J. R.; Ryd, A.; Salvati, E.; Skinnari, L.; Sun, W.; Teo, W. D.; Thom, J.; Thompson, J.; Tucker, J.; Weng, Y.; Winstrom, L.; Wittich, P.; Winn, D.; Abdullin, S.; Albrow, M.; Anderson, J.; Apollinari, G.; Bauerdick, L. A. T.; Beretvas, A.; Berryhill, J.; Bhat, P. C.; Bolla, G.; Burkett, K.; Butler, J. N.; Cheung, H. W. K.; Chlebana, F.; Cihangir, S.; Elvira, V. D.; Fisk, I.; Freeman, J.; Gao, Y.; Gottschalk, E.; Gray, L.; Green, D.; Grünendahl, S.; Gutsche, O.; Hanlon, J.; Hare, D.; Harris, R. M.; Hirschauer, J.; Hooberman, B.; Jindariani, S.; Johnson, M.; Joshi, U.; Klima, B.; Kreis, B.; Kwan, S.; Linacre, J.; Lincoln, D.; Lipton, R.; Liu, T.; Lykken, J.; Maeshima, K.; Marraffino, J. M.; Martinez Outschoorn, V. I.; Maruyama, S.; Mason, D.; McBride, P.; Merkel, P.; Mishra, K.; Mrenna, S.; Nahn, S.; Newman-Holmes, C.; O'Dell, V.; Prokofyev, O.; Sexton-Kennedy, E.; Sharma, S.; Soha, A.; Spalding, W. J.; Spiegel, L.; Taylor, L.; Tkaczyk, S.; Tran, N. V.; Uplegger, L.; Vaandering, E. W.; Vidal, R.; Whitbeck, A.; Whitmore, J.; Yang, F.; Acosta, D.; Avery, P.; Bortignon, P.; Bourilkov, D.; Carver, M.; Curry, D.; Das, S.; De Gruttola, M.; Di Giovanni, G. P.; Field, R. D.; Fisher, M.; Furic, I. K.; Hugon, J.; Konigsberg, J.; Korytov, A.; Kypreos, T.; Low, J. F.; Matchev, K.; Mei, H.; Milenovic, P.; Mitselmakher, G.; Muniz, L.; Rinkevicius, A.; Shchutska, L.; Snowball, M.; Sperka, D.; Yelton, J.; Zakaria, M.; Hewamanage, S.; Linn, S.; Markowitz, P.; Martinez, G.; Rodriguez, J. L.; Adams, T.; Askew, A.; Bochenek, J.; Diamond, B.; Haas, J.; Hagopian, S.; Hagopian, V.; Johnson, K. F.; Prosper, H.; Veeraraghavan, V.; Weinberg, M.; Baarmand, M. M.; Hohlmann, M.; Kalakhety, H.; Yumiceva, F.; Adams, M. R.; Apanasevich, L.; Berry, D.; Betts, R. R.; Bucinskaite, I.; Cavanaugh, R.; Evdokimov, O.; Gauthier, L.; Gerber, C. E.; Hofman, D. J.; Kurt, P.; O'Brien, C.; Sandoval Gonzalez, I. D.; Silkworth, C.; Turner, P.; Varelas, N.; Bilki, B.; Clarida, W.; Dilsiz, K.; Haytmyradov, M.; Merlo, J.-P.; Mermerkaya, H.; Mestvirishvili, A.; Moeller, A.; Nachtman, J.; Ogul, H.; Onel, Y.; Ozok, F.; Penzo, A.; Rahmat, R.; Sen, S.; Tan, P.; Tiras, E.; Wetzel, J.; Yi, K.; Barnett, B. A.; Blumenfeld, B.; Bolognesi, S.; Fehling, D.; Gritsan, A. V.; Maksimovic, P.; Martin, C.; Swartz, M.; Baringer, P.; Bean, A.; Benelli, G.; Bruner, C.; Gray, J.; Kenny, R. P.; Malek, M.; Murray, M.; Noonan, D.; Sanders, S.; Sekaric, J.; Stringer, R.; Wang, Q.; Wood, J. S.; Chakaberia, I.; Ivanov, A.; Kaadze, K.; Khalil, S.; Makouski, M.; Maravin, Y.; Saini, L. K.; Skhirtladze, N.; Svintradze, I.; Gronberg, J.; Lange, D.; Rebassoo, F.; Wright, D.; Baden, A.; Belloni, A.; Calvert, B.; Eno, S. C.; Gomez, J. A.; Hadley, N. J.; Kellogg, R. G.; Kolberg, T.; Lu, Y.; Mignerey, A. C.; Pedro, K.; Skuja, A.; Tonjes, M. B.; Tonwar, S. C.; Apyan, A.; Barbieri, R.; Busza, W.; Cali, I. A.; Chan, M.; Di Matteo, L.; Gomez Ceballos, G.; Goncharov, M.; Gulhan, D.; Klute, M.; Lai, Y. S.; Lee, Y.-J.; Levin, A.; Luckey, P. D.; Paus, C.; Ralph, D.; Roland, C.; Roland, G.; Stephans, G. S. F.; Sumorok, K.; Velicanu, D.; Veverka, J.; Wyslouch, B.; Yang, M.; Zanetti, M.; Zhukova, V.; Dahmes, B.; Gude, A.; Kao, S. C.; Klapoetke, K.; Kubota, Y.; Mans, J.; Nourbakhsh, S.; Pastika, N.; Rusack, R.; Singovsky, A.; Tambe, N.; Turkewitz, J.; Acosta, J. G.; Oliveros, S.; Avdeeva, E.; Bloom, K.; Bose, S.; Claes, D. R.; Dominguez, A.; Gonzalez Suarez, R.; Keller, J.; Knowlton, D.; Kravchenko, I.; Lazo-Flores, J.; Meier, F.; Ratnikov, F.; Snow, G. R.; Zvada, M.; Dolen, J.; Godshalk, A.; Iashvili, I.; Kharchilava, A.; Kumar, A.; Rappoccio, S.; Alverson, G.; Barberis, E.; Baumgartel, D.; Chasco, M.; Massironi, A.; Morse, D. M.; Nash, D.; Orimoto, T.; Trocino, D.; Wang, R. J.; Wood, D.; Zhang, J.; Hahn, K. A.; Kubik, A.; Mucia, N.; Odell, N.; Pollack, B.; Pozdnyakov, A.; Schmitt, M.; Stoynev, S.; Sung, K.; Velasco, M.; Won, S.; Brinkerhoff, A.; Chan, K. M.; Drozdetskiy, A.; Hildreth, M.; Jessop, C.; Karmgard, D. J.; Kellams, N.; Lannon, K.; Lynch, S.; Marinelli, N.; Musienko, Y.; Pearson, T.; Planer, M.; Ruchti, R.; Smith, G.; Valls, N.; Wayne, M.; Wolf, M.; Woodard, A.; Antonelli, L.; Brinson, J.; Bylsma, B.; Durkin, L. S.; Flowers, S.; Hart, A.; Hill, C.; Hughes, R.; Kotov, K.; Ling, T. Y.; Luo, W.; Puigh, D.; Rodenburg, M.; Winer, B. L.; Wolfe, H.; Wulsin, H. W.; Driga, O.; Elmer, P.; Hardenbrook, J.; Hebda, P.; Koay, S. A.; Lujan, P.; Marlow, D.; Medvedeva, T.; Mooney, M.; Olsen, J.; Piroué, P.; Quan, X.; Saka, H.; Stickland, D.; Tully, C.; Werner, J. S.; Zuranski, A.; Brownson, E.; Malik, S.; Mendez, H.; Ramirez Vargas, J. E.; Barnes, V. E.; Benedetti, D.; Bortoletto, D.; De Mattia, M.; Gutay, L.; Hu, Z.; Jha, M. K.; Jones, M.; Jung, K.; Kress, M.; Leonardo, N.; Miller, D. H.; Neumeister, N.; Radburn-Smith, B. C.; Shi, X.; Shipsey, I.; Silvers, D.; Svyatkovskiy, A.; Wang, F.; Xie, W.; Xu, L.; Zablocki, J.; Parashar, N.; Stupak, J.; Adair, A.; Akgun, B.; Ecklund, K. M.; Geurts, F. J. M.; Li, W.; Michlin, B.; Padley, B. P.; Redjimi, R.; Roberts, J.; Zabel, J.; Betchart, B.; Bodek, A.; Covarelli, R.; de Barbaro, P.; Demina, R.; Eshaq, Y.; Ferbel, T.; Garcia-Bellido, A.; Goldenzweig, P.; Han, J.; Harel, A.; Khukhunaishvili, A.; Korjenevski, S.; Petrillo, G.; Vishnevskiy, D.; Ciesielski, R.; Demortier, L.; Goulianos, K.; Mesropian, C.; Arora, S.; Barker, A.; Chou, J. P.; Contreras-Campana, C.; Contreras-Campana, E.; Duggan, D.; Ferencek, D.; Gershtein, Y.; Gray, R.; Halkiadakis, E.; Hidas, D.; Kaplan, S.; Lath, A.; Panwalkar, S.; Park, M.; Patel, R.; Salur, S.; Schnetzer, S.; Sheffield, D.; Somalwar, S.; Stone, R.; Thomas, S.; Thomassen, P.; Walker, M.; Rose, K.; Spanier, S.; York, A.; Bouhali, O.; Castaneda Hernandez, A.; Eusebi, R.; Flanagan, W.; Gilmore, J.; Kamon, T.; Khotilovich, V.; Krutelyov, V.; Montalvo, R.; Osipenkov, I.; Pakhotin, Y.; Perloff, A.; Roe, J.; Rose, A.; Safonov, A.; Suarez, I.; Tatarinov, A.; Ulmer, K. A.; Akchurin, N.; Cowden, C.; Damgov, J.; Dragoiu, C.; Dudero, P. R.; Faulkner, J.; Kovitanggoon, K.; Kunori, S.; Lee, S. W.; Libeiro, T.; Volobouev, I.; Appelt, E.; Delannoy, A. G.; Greene, S.; Gurrola, A.; Johns, W.; Maguire, C.; Mao, Y.; Melo, A.; Sharma, M.; Sheldon, P.; Snook, B.; Tuo, S.; Velkovska, J.; Arenton, M. W.; Boutle, S.; Cox, B.; Francis, B.; Goodell, J.; Hirosky, R.; Ledovskoy, A.; Li, H.; Lin, C.; Neu, C.; Wood, J.; Clarke, C.; Harr, R.; Karchin, P. E.; Kottachchi Kankanamge Don, C.; Lamichhane, P.; Sturdy, J.; Belknap, D. A.; Carlsmith, D.; Cepeda, M.; Dasu, S.; Dodd, L.; Duric, S.; Friis, E.; Hall-Wilton, R.; Herndon, M.; Hervé, A.; Klabbers, P.; Lanaro, A.; Lazaridis, C.; Levine, A.; Loveless, R.; Mohapatra, A.; Ojalvo, I.; Perry, T.; Pierro, G. A.; Polese, G.; Ross, I.; Sarangi, T.; Savin, A.; Smith, W. H.; Taylor, D.; Vuosalo, C.; Woods, N.

    2015-04-01

    A search has been performed for long-lived particles that could have come to rest within the CMS detector, using the time intervals between LHC beam crossings. The existence of such particles could be deduced from observation of their decays via energy deposits in the CMS calorimeter appearing at times that are well separated from any proton-proton collisions. Using a data set corresponding to an integrated luminosity of 18.6 of 8 proton-proton collisions, and a search interval corresponding to 281 h of trigger livetime, 10 events are observed, with a background prediction of events. Limits are presented at 95 % confidence level on gluino and top squark production, for over 13 orders of magnitude in the mean proper lifetime of the stopped particle. Assuming a cloud model of R-hadron interactions, a gluino with mass 1000 and a top squark with mass 525 are excluded, for lifetimes between 1 s and 1000. These results are the most stringent constraints on stopped particles to date.

  7. Sustainability assessment through analogical models: The approach of aerobic living-organism

    NASA Astrophysics Data System (ADS)

    Dassisti, Michele

    2014-10-01

    The most part of scientific discoveries of human being borrow ideas and inspiration from nature. This point gives the rationale of the sustainability assessment approach presented here and based on the aerobic living organism (ALO) already developed by the author, which funds on the basic assumption that it is reasonable and effective to refer to the analogy between an system organized by human (say, manufacturing system, enterprise, etc.) for several decision-making scopes. The critical review of the ALO conceptual model already developed is here discussed through an example of an Italian small enterprise manufacturing metal components for civil furniture to assess its feasibility for sustainability appraisal.

  8. Distributions of short-lived radioactive nuclei produced by young embedded star clusters

    SciTech Connect

    Adams, Fred C.; Fatuzzo, Marco; Holden, Lisa

    2014-07-01

    Most star formation in the Galaxy takes place in clusters, where the most massive members can affect the properties of other constituent solar systems. This paper considers how clusters influence star formation and forming planetary systems through nuclear enrichment from supernova explosions, where massive stars deliver short-lived radioactive nuclei (SLRs) to their local environment. The decay of these nuclei leads to both heating and ionization, and thereby affects disk evolution, disk chemistry, and the accompanying process of planet formation. Nuclear enrichment can take place on two spatial scales: (1) within the cluster itself (? ? 1 pc), the SLRs are delivered to the circumstellar disks associated with other cluster members. (2) On the next larger scale (? ? 2-10 pc), SLRs are injected into the background molecular cloud; these nuclei provide heating and ionization to nearby star-forming regions and to the next generation of disks. For the first scenario, we construct the expected distributions of radioactive enrichment levels provided by embedded clusters. Clusters can account for the SLR mass fractions inferred for the early Solar Nebula, but typical SLR abundances are lower by a factor of ?10. For the second scenario, we find that distributed enrichment of SLRs in molecular clouds leads to comparable abundances. For both the direct and distributed enrichment processes, the masses of {sup 26}Al and {sup 60}Fe delivered to individual circumstellar disks typically fall in the range 10-100 pM {sub ?} (where 1 pM {sub ?} = 10{sup –12} M {sub ?}). The corresponding ionization rate due to SLRs typically falls in the range ?{sub SLR} ? 1-5 × 10{sup –19} s{sup –1}. This ionization rate is smaller than that due to cosmic rays, ?{sub CR} ? 10{sup –17} s{sup –1}, but will be important in regions where cosmic rays are attenuated (e.g., disk mid-planes).

  9. Positron emission tomography for measurement of copper fluxes in live organisms

    PubMed Central

    Peng, Fangyu

    2014-01-01

    Copper is an essential nutrient for the physiology of live organisms, but excessive copper can be harmful. Copper radioisotopes are used for measurement of copper fluxes in live organisms using a radioactivity assay of body fluids or whole-body positron emission tomography (PET). Hybrid positron emission tomography–computed tomography (PET/CT) is a versatile tool for real-time measurement of copper fluxes combining the high sensitivity and quantification capability of PET and the superior spatial resolution of CT for anatomic localization of radioactive tracer activity. Kinetic analysis of copper metabolism in the liver and other extra-hepatic tissues of Atp7b−/− knockout mice, a mouse model of Wilson’s disease, demonstrated the feasibility of measuring copper fluxes in live organisms with PET/CT using copper-64 chloride (64CuCl2) as a radioactive tracer (64CuCl2-PET/CT). 64CuCl2-PET/CT holds potential as a useful tool for diagnosis of inherited and acquired human copper metabolism disorders, and for monitoring the effects of copper-modulating therapy. PMID:24628290

  10. Positron emission tomography for measurement of copper fluxes in live organisms.

    PubMed

    Peng, Fangyu

    2014-05-01

    Copper is an essential nutrient for the physiology of live organisms, but excessive copper can be harmful. Copper radioisotopes are used for measurement of copper fluxes in live organisms using a radioactivity assay of body fluids or whole-body positron emission tomography (PET). Hybrid positron emission tomography-computed tomography (PET/CT) is a versatile tool for real-time measurement of copper fluxes combining the high sensitivity and quantification capability of PET and the superior spatial resolution of CT for anatomic localization of radioactive tracer activity. Kinetic analysis of copper metabolism in the liver and extrahepatic tissues of Atp7b(-/-) knockout mice, a mouse model of Wilson's disease, demonstrated the feasibility of measuring copper fluxes in live organisms with PET/CT using copper-64 chloride ((64) CuCl2 ) as a radioactive tracer ((64) CuCl2 -PET/CT). (64) CuCl2 -PET/CT holds potential as a useful tool for the diagnosis of inherited and acquired human copper metabolism disorders and for monitoring the effects of copper-modulating therapy. PMID:24628290

  11. Emerging trends in free-living amebic infections of the brain: implications for organ transplantation.

    PubMed

    Diaz, James H; Boudreaux, J Philip

    2013-01-01

    This epidemiological review analyzed cases of Naegleria fowleri primary amebic meningoencephalitis (PAM) and Balamuthia mandrillaris granulomatous amebic encephalitis (GAE) for behavioral and demographic risk factors for pathogen exposures and potential transmission by organ transplantation. The Centers for Disease Control and Prevention (CDC) Naegleria Workgroup Registry provided 121 cases of laboratory-confirmed PAM over the period, 1937-2007. The CDC and the California Encephalitis Project provided 28 cases of GAE over the period, 1994-2010. There was a statistically significant increase in clusters of PAM cases between the periods, 1937-1996 and 1997-2007. Risk factors for PAM included male gender, freshwater exposures, summer exposures, and exposures in southern-tier US (United States) states. Risk factors for GAE included male gender, exposures in southern-tier US states, Hispanic ethnicity in California, occupational or recreational contacts with soil, and recent organ transplantation. Fatal free-living amebic infections of the brain are increasing today due to more frequent environmental, recreational, and occupational exposures; organ transplantation; and unanticipated clusters of PAM due to N. fowleri inoculations following nasal sinus irrigation using neti pots filled with municipal tap water. Potential organ donors dying from meningoencephalitis of unexplained causes should be screened for free-living amebic infections of the brain capable of hematogenous dissemination in organ recipients. PMID:25073256

  12. Oral Administration of Live Exopolysaccharide-Producing Pediococcus parvulus, but Not Purified Exopolysaccharide, Suppressed Enterobacteriaceae without Affecting Bacterial Diversity in Ceca of Mice

    PubMed Central

    Xu, Jie; Öste, Rickard; Holst, Olle; Molin, Göran

    2013-01-01

    Growing evidence indicates that the gut microbiota could have an important role in the development of diet- and lifestyle-induced diseases. It has been shown that modulation of the gut microbiota by means of probiotics and prebiotics could improve host health. An oat-based product fermented by the exopolysaccharide (EPS)-producing organism Pediococcus parvulus 2.6 has been reported to have a bifidogenic effect. To find out whether the effect could be attributed to the EPS or the bacterium, mice were fed a diet supplemented with 2% purified EPS or 108 CFU/g of live P. parvulus 2.6 for 6 weeks. Both supplementations altered the gut microbiota composition but in different directions. Purified EPS not only significantly lowered the microbial diversity (P < 0.001) but decreased the bifidobacterial population (P = 0.01). In contrast, the live EPS-producing bacterium P. parvulus 2.6 antagonized Enterobacteriaceae without disturbing the homeostasis of the cecal microbiota. PMID:23770909

  13. 7 CFR 205.305 - Multi-ingredient packaged products with less than 70 percent organically produced ingredients.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Practices), DEPARTMENT OF AGRICULTURE (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC... organically produced ingredients may only identify the organic content of the product by: (1) Identifying each organically produced ingredient in the ingredient statement with the word, “organic,” or with an asterisk...

  14. 7 CFR 205.305 - Multi-ingredient packaged products with less than 70 percent organically produced ingredients.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... Practices), DEPARTMENT OF AGRICULTURE (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC... organically produced ingredients may only identify the organic content of the product by: (1) Identifying each organically produced ingredient in the ingredient statement with the word, “organic,” or with an asterisk...

  15. 7 CFR 205.305 - Multi-ingredient packaged products with less than 70 percent organically produced ingredients.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... Practices), DEPARTMENT OF AGRICULTURE (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC... organically produced ingredients may only identify the organic content of the product by: (1) Identifying each organically produced ingredient in the ingredient statement with the word, “organic,” or with an asterisk...

  16. 7 CFR 205.305 - Multi-ingredient packaged products with less than 70 percent organically produced ingredients.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Practices), DEPARTMENT OF AGRICULTURE (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC... organically produced ingredients may only identify the organic content of the product by: (1) Identifying each organically produced ingredient in the ingredient statement with the word, “organic,” or with an asterisk...

  17. Organic substances in produced and formation water from unconventional natural gas extraction in coal and shale

    USGS Publications Warehouse

    Orem, William H.; Tatu, Calin A.; Varonka, Matthew S.; Lerch, Harry E.; Bates, Anne L.; Engle, Mark A.; Crosby, Lynn M.; McIntosh, Jennifer

    2014-01-01

    Organic substances in produced and formation water from coalbed methane (CBM) and gas shale plays from across the USA were examined in this study. Disposal of produced waters from gas extraction in coal and shale is an important environmental issue because of the large volumes of water involved and the variable quality of this water. Organic substances in produced water may be environmentally relevant as pollutants, but have been little studied. Results from five CBM plays and two gas shale plays (including the Marcellus Shale) show a myriad of organic chemicals present in the produced and formation water. Organic compound classes present in produced and formation water in CBM plays include: polycyclic aromatic hydrocarbons (PAHs), heterocyclic compounds, alkyl phenols, aromatic amines, alkyl aromatics (alkyl benzenes, alkyl biphenyls), long-chain fatty acids, and aliphatic hydrocarbons. Concentrations of individual compounds range from < 1 to 100 μg/L, but total PAHs (the dominant compound class for most CBM samples) range from 50 to 100 μg/L. Total dissolved organic carbon (TOC) in CBM produced water is generally in the 1–4 mg/L range. Excursions from this general pattern in produced waters from individual wells arise from contaminants introduced by production activities (oils, grease, adhesives, etc.). Organic substances in produced and formation water from gas shale unimpacted by production chemicals have a similar range of compound classes as CBM produced water, and TOC levels of about 8 mg/L. However, produced water from the Marcellus Shale using hydraulic fracturing has TOC levels as high as 5500 mg/L and a range of added organic chemicals including, solvents, biocides, scale inhibitors, and other organic chemicals at levels of 1000 s of μg/L for individual compounds. Levels of these hydraulic fracturing chemicals and TOC decrease rapidly over the first 20 days of water recovery and some level of residual organic contaminants remain up to 250 days after hydraulic fracturing. Although the environmental impacts of the organics in produced water are not well defined, results suggest that care should be exercised in the disposal and release of produced waters containing these organic substances into the environment because of the potential toxicity of many of these substances.

  18. Probing new physics with long-lived charged particles produced by atmospheric and astrophysical neutrinos

    NASA Astrophysics Data System (ADS)

    Ando, Shin'ichiro; Beacom, John F.; Profumo, Stefano; Rainwater, David

    2008-04-01

    As suggested by some extensions of the standard model of particle physics, dark matter may be a super-weakly-interacting lightest stable particle, while the next-to-lightest particle (NLP) is charged and metastable. One could test such a possibility with neutrino telescopes, by detecting the charged NLPs produced in high-energy neutrino collisions with Earth matter. We study the production of charged NLPs by both atmospheric and astrophysical neutrinos; only the latter, which is largely uncertain and has not been detected yet, was the focus of previous studies. We compute the resulting fluxes of the charged NLPs, compare those of different origins and analyze the dependence on the underlying particle physics set-up. We point out that, even if the astrophysical neutrino flux is very small, atmospheric neutrinos, especially those from the prompt decay of charmed mesons, may provide a detectable flux of NLP pairs at neutrino telescopes such as IceCube. We also comment on the flux of charged NLPs expected from proton-nucleon collisions and show that, for theoretically motivated and phenomenologically viable models, it is typically subdominant and below detectable rates.

  19. Recent Advances in the Application of Metabolomics to Studies of Biogenic Volatile Organic Compounds (BVOC) Produced by Plant

    PubMed Central

    Iijima, Yoko

    2014-01-01

    In many plants, biogenic volatile organic compounds (BVOCs) are produced as specialized metabolites that contribute to the characteristics of each plant. The varieties and composition of BVOCs are chemically diverse by plant species and the circumstances in which the plants grow, and also influenced by herbivory damage and pathogen infection. Plant-produced BVOCs are receptive to many organisms, from microorganisms to human, as both airborne attractants and repellants. In addition, it is known that some BVOCs act as signals to prime a plant for the defense response in plant-to-plant communications. The compositional profiles of BVOCs can, thus, have profound influences in the physiological and ecological aspects of living organisms. Apart from that, some of them are commercially valuable as aroma/flavor compounds for human. Metabolomic technologies have recently revealed new insights in biological systems through metabolic dynamics. Here, the recent advances in metabolomics technologies focusing on plant-produced BVOC analyses are overviewed. Their application markedly improves our knowledge of the role of BVOCs in chemosystematics, ecological influences, and aroma research, as well as being useful to prove the biosynthetic mechanisms of BVOCs. PMID:25257996

  20. Short-lived organic trace gases in the UT/LS: Results from recent field campaigns.

    NASA Astrophysics Data System (ADS)

    Atlas, E.; Lueb, R.; Zhu, X.; Pope, L.; Schauffler, S.; Pan, L.; Bowman, K. P.; Blake, D.; Meinardi, S.

    2008-12-01

    The chemistry of the upper troposphere/lower stratosphere can be impacted by delivery of reactive trace gases that are variable in composition and depend on source emissions and transport pathway and time. Because surface emissions include gases with a range of chemical lifetimes, and because different source emissions (e.g. marine boundary layer, anthropogenic emissions, biomass burning) can have different chemical signatures, the composition of the organic trace gases that are found in the UT/LS region have the potential to provide diagnostic information on air mass sources and transport time scales. Further, the role of short-lived organic halogen gases in the UT/LS has been highlighted as a major uncertainty for defining the reactive halogen budget and the chemical boundary conditions for the stratospheric chemistry that affects ozone depletion rates. Recent campaigns in the tropics (TC-4 and AVE missions) and in the extra-tropics (START08) have included the measurement of trace gases from whole air sampling and analysis on the NASA WB-57 or NSF Gulfstream V aircraft. Measurements of a range of halocarbons, hydrocarbons, organic nitrates, and sulfur species were made to examine the role of short-lived organic gases in the UT/LS. This presentation will highlight different aspects of these measurements that deal with transport pathways, transport rates, and halogen budgets.

  1. The percentage of living bacterial cells related to organic carbon release from senescent oceanic phytoplankton

    NASA Astrophysics Data System (ADS)

    Lasternas, S.; Agustí, S.

    2014-11-01

    Bacteria recycle vast amounts of organic carbon, playing key biogeochemical and ecological roles in the ocean. Bacterioplankton dynamics are expected to be dependent on phytoplankton primary production, but there is a high diversity of processes (e.g., sloppy feeding, cell exudation, viral lysis) involved in the transfer of primary production to dissolved organic carbon available to bacteria. Here, we show the percentage of living heterotrophic bacterioplankton in the subtropical NE Atlantic Ocean in relation to phytoplankton extracellular carbon release (PER). PER represents the fraction of primary production released as dissolved organic carbon. PER variability was explained by phytoplankton cell death, with communities experiencing higher phytoplankton cell mortality showing a larger proportion of phytoplankton extracellular carbon release. Both PER and the percentage of dead phytoplankton cells increased from eutrophic to oligotrophic waters, while abundance of heterotrophic bacteria was highest in the intermediate waters. The percentage of living heterotrophic bacterial cells (range: 60-95%) increased with increasing phytoplankton extracellular carbon release from productive to oligotrophic waters in the subtropical NE Atlantic. The lower PERs, observed at the upwelling waters, have resulted in a decrease in the flux of phytoplankton dissolved organic carbon (DOC) per bacterial cell. The results highlight phytoplankton cell death as a process influencing the flow of dissolved photosynthetic carbon in this region of the subtropical NE Atlantic Ocean, and suggest a close coupling between the fraction of primary production released and heterotrophic bacterial cell survival.

  2. Lanthanide near infrared imaging in living cells with Yb3+ nano metal organic frameworks

    PubMed Central

    Foucault-Collet, Alexandra; Gogick, Kristy A.; White, Kiley A.; Villette, Sandrine; Pallier, Agnès; Collet, Guillaume; Kieda, Claudine; Li, Tao; Geib, Steven J.; Rosi, Nathaniel L.; Petoud, Stéphane

    2013-01-01

    We have created unique near-infrared (NIR)–emitting nanoscale metal-organic frameworks (nano-MOFs) incorporating a high density of Yb3+ lanthanide cations and sensitizers derived from phenylene. We establish here that these nano-MOFs can be incorporated into living cells for NIR imaging. Specifically, we introduce bulk and nano-Yb-phenylenevinylenedicarboxylate-3 (nano-Yb-PVDC-3), a unique MOF based on a PVDC sensitizer-ligand and Yb3+ NIR-emitting lanthanide cations. This material has been structurally characterized, its stability in various media has been assessed, and its luminescent properties have been studied. We demonstrate that it is stable in certain specific biological media, does not photobleach, and has an IC50 of 100 μg/mL, which is sufficient to allow live cell imaging. Confocal microscopy and inductively coupled plasma measurements reveal that nano-Yb-PVDC-3 can be internalized by cells with a cytoplasmic localization. Despite its relatively low quantum yield, nano-Yb-PVDC-3 emits a sufficient number of photons per unit volume to serve as a NIR-emitting reporter for imaging living HeLa and NIH 3T3 cells. NIR microscopy allows for highly efficient discrimination between the nano-MOF emission signal and the cellular autofluorescence arising from biological material. This work represents a demonstration of the possibility of using NIR lanthanide emission for biological imaging applications in living cells with single-photon excitation. PMID:24108356

  3. Lanthanide near infrared imaging in living cells with Yb3+ nano metal organic frameworks.

    PubMed

    Foucault-Collet, Alexandra; Gogick, Kristy A; White, Kiley A; Villette, Sandrine; Pallier, Agnès; Collet, Guillaume; Kieda, Claudine; Li, Tao; Geib, Steven J; Rosi, Nathaniel L; Petoud, Stéphane

    2013-10-22

    We have created unique near-infrared (NIR)-emitting nanoscale metal-organic frameworks (nano-MOFs) incorporating a high density of Yb(3+) lanthanide cations and sensitizers derived from phenylene. We establish here that these nano-MOFs can be incorporated into living cells for NIR imaging. Specifically, we introduce bulk and nano-Yb-phenylenevinylenedicarboxylate-3 (nano-Yb-PVDC-3), a unique MOF based on a PVDC sensitizer-ligand and Yb(3+) NIR-emitting lanthanide cations. This material has been structurally characterized, its stability in various media has been assessed, and its luminescent properties have been studied. We demonstrate that it is stable in certain specific biological media, does not photobleach, and has an IC50 of 100 μg/mL, which is sufficient to allow live cell imaging. Confocal microscopy and inductively coupled plasma measurements reveal that nano-Yb-PVDC-3 can be internalized by cells with a cytoplasmic localization. Despite its relatively low quantum yield, nano-Yb-PVDC-3 emits a sufficient number of photons per unit volume to serve as a NIR-emitting reporter for imaging living HeLa and NIH 3T3 cells. NIR microscopy allows for highly efficient discrimination between the nano-MOF emission signal and the cellular autofluorescence arising from biological material. This work represents a demonstration of the possibility of using NIR lanthanide emission for biological imaging applications in living cells with single-photon excitation. PMID:24108356

  4. Micro-X-ray absorption near edge structure as a suitable probe to monitor live organisms

    NASA Astrophysics Data System (ADS)

    Oger, Phil M.; Daniel, I.; Simionovici, A.; Picard, A.

    2008-04-01

    X-ray spectroscopies are very powerful tools to determine the chemistry of complex dilute solutes in abiotic and biotic systems. We have assayed their suitability to monitor the chemistry of complex solutions in a live biotic system. The impact of the probe on cells was quantified for 4 different cellular organisms differing in their resistance level to environmental stresses. We show that none of the organisms tested can survive the radiation doses needed for the acquisition of meaningful spectroscopic data. Therefore, on one hand, X-ray spectroscopy cannot be applied to the monitoring of single cells, and cellular damages have to be taken into account in the interpretation of the evolution of such systems. On the other hand, due to the limited extension of X-ray induced cellular damages in the culture volume, it is possible to probe a population of live cells provided that the culture to beam probe ratio is large enough to minimize the impact of mortality on the evolution of the biological system. Our results suggest that it could be possible to probe the volume in the close vicinity of a cell without affecting its activity. Using this setup we could monitor the reduction of selenite by the X-ray sensitive bacterium, Agrobacterium tumefaciens strain C58, for 24 h. This method has a great potential to monitor the respiration of various metals, such as iron, manganese and arsenic, in situ under relevant environmental conditions by live microorganisms.

  5. Dynamic Organization of Myristoylated Src in the Live Cell Plasma Membrane.

    PubMed

    Smith, Adam W; Huang, Hector H; Endres, Nicholas F; Rhodes, Christopher; Groves, Jay T

    2016-02-11

    The spatial organization of lipid-anchored proteins in the plasma membrane directly influences cell signaling, but measuring such organization in situ is experimentally challenging. The canonical oncogene, c-Src, is a lipid anchored protein that plays a key role in integrin-mediated signal transduction within focal adhesions and cell-cell junctions. Because of its activity in specific plasma membrane regions, structural motifs within the protein have been hypothesized to play an important role in its subcellular localization. This study used a combination of time-resolved fluorescence fluctuation spectroscopy and super-resolution microscopy to quantify the dynamic organization of c-Src in live cell membranes. Pulsed-interleaved excitation fluorescence cross-correlation spectroscopy (PIE-FCCS) showed that a small fraction of c-Src transiently sorts into membrane clusters that are several times larger than the monomers. Photoactivated localization microscopy (PALM) confirmed that c-Src partitions into clusters with low probability and showed that the characteristic size of the clusters is 10-80 nm. Finally, time-resolved fluorescence anisotropy measurements were used to quantify the rotational mobility of c-Src to determine how it interacts with its local environment. Taken together, these results build a quantitative description of the mobility and clustering behavior of the c-Src nonreceptor tyrosine kinase in the live cell plasma membrane. PMID:26771210

  6. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid.

    PubMed

    Stracy, Mathew; Lesterlin, Christian; Garza de Leon, Federico; Uphoff, Stephan; Zawadzki, Pawel; Kapanidis, Achillefs N

    2015-08-11

    Despite the fundamental importance of transcription, a comprehensive analysis of RNA polymerase (RNAP) behavior and its role in the nucleoid organization in vivo is lacking. Here, we used superresolution microscopy to study the localization and dynamics of the transcription machinery and DNA in live bacterial cells, at both the single-molecule and the population level. We used photoactivated single-molecule tracking to discriminate between mobile RNAPs and RNAPs specifically bound to DNA, either on promoters or transcribed genes. Mobile RNAPs can explore the whole nucleoid while searching for promoters, and spend 85% of their search time in nonspecific interactions with DNA. On the other hand, the distribution of specifically bound RNAPs shows that low levels of transcription can occur throughout the nucleoid. Further, clustering analysis and 3D structured illumination microscopy (SIM) show that dense clusters of transcribing RNAPs form almost exclusively at the nucleoid periphery. Treatment with rifampicin shows that active transcription is necessary for maintaining this spatial organization. In faster growth conditions, the fraction of transcribing RNAPs increases, as well as their clustering. Under these conditions, we observed dramatic phase separation between the densest clusters of RNAPs and the densest regions of the nucleoid. These findings show that transcription can cause spatial reorganization of the nucleoid, with movement of gene loci out of the bulk of DNA as levels of transcription increase. This work provides a global view of the organization of RNA polymerase and transcription in living cells. PMID:26224838

  7. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

    PubMed Central

    Stracy, Mathew; Lesterlin, Christian; Garza de Leon, Federico; Uphoff, Stephan; Zawadzki, Pawel; Kapanidis, Achillefs N.

    2015-01-01

    Despite the fundamental importance of transcription, a comprehensive analysis of RNA polymerase (RNAP) behavior and its role in the nucleoid organization in vivo is lacking. Here, we used superresolution microscopy to study the localization and dynamics of the transcription machinery and DNA in live bacterial cells, at both the single-molecule and the population level. We used photoactivated single-molecule tracking to discriminate between mobile RNAPs and RNAPs specifically bound to DNA, either on promoters or transcribed genes. Mobile RNAPs can explore the whole nucleoid while searching for promoters, and spend 85% of their search time in nonspecific interactions with DNA. On the other hand, the distribution of specifically bound RNAPs shows that low levels of transcription can occur throughout the nucleoid. Further, clustering analysis and 3D structured illumination microscopy (SIM) show that dense clusters of transcribing RNAPs form almost exclusively at the nucleoid periphery. Treatment with rifampicin shows that active transcription is necessary for maintaining this spatial organization. In faster growth conditions, the fraction of transcribing RNAPs increases, as well as their clustering. Under these conditions, we observed dramatic phase separation between the densest clusters of RNAPs and the densest regions of the nucleoid. These findings show that transcription can cause spatial reorganization of the nucleoid, with movement of gene loci out of the bulk of DNA as levels of transcription increase. This work provides a global view of the organization of RNA polymerase and transcription in living cells. PMID:26224838

  8. A model for chromosome organization during the cell cycle in live E. coli

    PubMed Central

    Liu, Yuru; Xie, Ping; Wang, Pengye; Li, Ming; Li, Hui; Li, Wei; Dou, Shuoxing

    2015-01-01

    Bacterial chromosomal DNA is a highly compact nucleoid. The organization of this nucleoid is poorly understood due to limitations in the methods used to monitor the complexities of DNA organization in live bacteria. Here, we report that circular plasmid DNA is auto-packaged into a uniform dual-toroidal-spool conformation in response to mechanical stress stemming from sharp bending and un-winding by atomic force microscopic analysis. The mechanism underlying this phenomenon was deduced with basic physical principles to explain the auto-packaging behaviour of circular DNA. Based on our observations and previous studies, we propose a dynamic model of how chromosomal DNA in E. coli may be organized during a cell division cycle. Next, we test the model by monitoring the development of HNS clusters in live E. coli during a cell cycle. The results were in close agreement with the model. Furthermore, the model accommodates a majority of the thus-far-discovered remarkable features of nucleoids in vivo. PMID:26597953

  9. Leishmania parasites: could we consider them as living organisms per se?

    PubMed

    Milon, Geneviève

    2008-07-01

    Over the last 10 years - in Microbes and Infection - the publications dealing with protozoan parasites were mainly providing insights on the pathogenic processes leading to the local or systemic damages in the mammals, these parasitic organisms exploit/subvert as hosts. As a result, many investigators introduced the objectives of their analysis by referring to "host-pathogen" interactions. Though we, as investigators, are all determined to decipher the pathogenic processes which can indeed be coupled to the parasite uncontrolled development, I think that the parasites - alike the living organisms they subvert as hosts - need to be considered as living organisms per se, instead of being considered as "pathogens". Such a conceptual frame will promote research on the processes on which relies their perpetuation whatever the level under investigations - individual and/or population level. Only the unicellular protozoan parasites of the genus Leishmania known to be hosted by blood-feeding insects and mammals will be further considered in this brief contribution. PMID:18672090

  10. Living organisms influence on environmental conditions: pH modulation by amphibian embryos versus aluminum toxicity.

    PubMed

    Herkovits, Jorge; Castañaga, Luis Alberto; D'Eramo, José Luis; Jourani, Victoria Platonova

    2015-11-01

    The LC10, 50 and 90/24h of aluminum for Rhinella arenarum embryos at complete operculum stage were 0.55, 0.75 and 1mgAl(3+)/L respectively. Those values did not change significantly by expanding the exposure period till 168h. The aluminum toxicity was evaluated in different pH conditions by means of a citrate buffer resulting for instance, 1mgAl(3+)/L at pH 4, 4.1, 5 and 6 in 100%, 70%, 35% and 0% of lethality respectively. As an outstanding feature, the embryos changed the pH of the maintaining media both in the case of Al(3+) or citrate buffer treatments toward neutral. 10 embryos in 40mL of AMPHITOX solution were able to increase the pH from 4.2 to 7.05, a fact related with a metabolic shift resulting in an increase in nitrogen loss as ammonia. Our study point out the natural selection of the most resistant amphibian embryos both for pH or aluminum as well as the capacity of living organisms (as a population) to alter their chemical environment toward optimal conditions for their survival. As these facts occur at early life stages, it expand the concept that living organisms at ontogenic stages are biomarker of environmental signatures of the evolutionary process (Herkovits, 2006) to a global Onto-Evo concept which imply also the feedback mechanisms from living organisms to shape environmental conditions in a way that benefits them. PMID:26126231

  11. The ecological advantage of sexual reproduction in multicellular long-lived organisms.

    PubMed

    Song, Y; Scheu, S; Drossel, B

    2012-03-01

    We present a model for the advantage of sexual reproduction in multicellular long-lived species in a world of structured resources in short supply. The model combines features of the Tangled Bank and the Red Queen hypothesis of sexual reproduction and is of broad applicability. The model is ecologically explicit with the dynamics of resources and consumers being modelled by differential equations. The life history of consumers is shaped by body mass-dependent rates as implemented in the metabolic theory of ecology. We find that over a broad range of parameters, sexual reproduction wins despite the two-fold cost of producing males, due to the advantage of producing offspring that can exploit underutilized resources. The advantage is largest when maturation and production of offspring set in before the resources of the parents become depleted, but not too early, due to the cost of producing males. The model thus leads to the dominance of sexual reproduction in multicellular animals living in complex environments, with resource availability being the most important factor affecting survival and reproduction. PMID:22268809

  12. Organization of Risk Analysis Codes for Living Evaluations (ORACLE). [Computer system facilitation of NRC operators

    SciTech Connect

    Batt, D.L.; MacDonald, P.E.; Sattison, M.B.; Vesely, W.E.

    1987-01-01

    ORACLE (Organization of Risk Analysis Codes for Living Evaluations) is an integration concept for using risk-based information in United States Nuclear Regulatory Commission (USNRC) applications. Portions of ORACLE are being developed at the Idaho National Laboratory for the USNRC. The ORACLE concept consists of related databases, software, user interfaces, processes, and quality control checks allowing a wide variety of regulatory problems and activities to be adressed using current, updated PRA information. The ORACLE concept provides for smooth transitions between on code and the next without pre- or post- processing. 3 figs.

  13. The ABC of ABCS: a phylogenetic and functional classification of ABC systems in living organisms.

    PubMed

    Dassa, E; Bouige, P

    2001-01-01

    ATP binding cassette (ABC) systems constitute one of the most abundant superfamilies of proteins. They are involved not only in the transport of a wide variety of substances, but also in many cellular processes and in their regulation. In this paper, we made a comparative analysis of the properties of ABC systems and we provide a phylogenetic and functional classification. This analysis will be helpful to accurately annotate ABC systems discovered during the sequencing of the genome of living organisms and to identify the partners of the ABC ATPases. PMID:11421270

  14. N-Chlorotaurine, a Long-Lived Oxidant Produced by Human Leukocytes, Inactivates Shiga Toxin of Enterohemorrhagic Escherichia coli

    PubMed Central

    Eitzinger, Christian; Ehrlenbach, Silvia; Lindner, Herbert; Kremser, Leopold; Gottardi, Waldemar; Debabov, Dmitri; Anderson, Mark

    2012-01-01

    N-chlorotaurine (NCT), the main representative of long-lived oxidants produced by granulocytes and monocytes, is known to exert broad-spectrum microbicidal activity. Here we show that NCT directly inactivates Shiga toxin 2 (Stx2), used as a model toxin secreted by enterohemorrhagic Escherichia coli (EHEC). Bacterial growth and Stx2 production were both inhibited by 2 mM NCT. The cytotoxic effect of Stx2 on Vero cells was removed by ?5.5 mM NCT. Confocal microscopy and FACS analyses showed that the binding of Stx2 to human kidney glomerular endothelial cells was inhibited, and no NCT-treated Stx2 entered the cytosol. Mass spectrometry displayed oxidation of thio groups and aromatic amino acids of Stx2 by NCT. Therefore, long-lived oxidants may act as powerful tools of innate immunity against soluble virulence factors of pathogens. Moreover, inactivation of virulence factors may contribute to therapeutic success of NCT and novel analogs, which are in development as topical antiinfectives. PMID:23139739

  15. How fast do living organisms move: Maximum speeds from bacteria to elephants and whales

    NASA Astrophysics Data System (ADS)

    Meyer-Vernet, Nicole; Rospars, Jean-Pierre

    2015-08-01

    Despite their variety and complexity, living organisms obey simple scaling laws due to the universality of the laws of physics. In the present paper, we study the scaling between maximum speed and size, from bacteria to the largest mammals. While the preferred speed has been widely studied in the framework of Newtonian mechanics, the maximum speed has rarely attracted the interest of physicists, despite its remarkable scaling property; it is roughly proportional to length throughout nearly the whole range of running and swimming organisms. We propose a simple order-of-magnitude interpretation of this ubiquitous relationship, based on physical properties shared by life forms of very different body structure and varying by more than 20 orders of magnitude in body mass.

  16. Polarized Fluorescence Microscopy to Study Cytoskeleton Assembly and Organization in Live Cells.

    PubMed

    McQuilken, Molly; Mehta, Shalin B; Verma, Amitabh; Harris, Grant; Oldenbourg, Rudolf; Gladfelter, Amy S

    2015-01-01

    The measurement of not only the location but also the organization of molecules in live cells is crucial to understanding diverse biological processes. Polarized light microscopy provides a nondestructive means to evaluate order within subcellular domains. When combined with fluorescence microscopy and GFP-tagged proteins, the approach can reveal organization within specific populations of molecules. This unit describes a protocol for measuring the architectural dynamics of cytoskeletal components using polarized fluorescence microscopy and OpenPolScope open-access software (http://www.openpolscope.org). The protocol describes installation of linear polarizers or a liquid crystal (LC) universal compensator, calibration of the system, polarized fluorescence imaging, and analysis. The use of OpenPolScope software and hardware allows for reliable, user-friendly image acquisition to measure and analyze polarized fluorescence. PMID:26061244

  17. Human proximal tubule epithelial cells cultured on hollow fibers: living membranes that actively transport organic cations

    PubMed Central

    Jansen, J.; De Napoli, I. E; Fedecostante, M.; Schophuizen, C. M. S.; Chevtchik, N. V.; Wilmer, M. J.; van Asbeck, A. H.; Croes, H. J.; Pertijs, J. C.; Wetzels, J. F. M.; Hilbrands, L. B.; van den Heuvel, L. P.; Hoenderop, J. G.; Stamatialis, D.; Masereeuw, R.

    2015-01-01

    The bioartificial kidney (BAK) aims at improving dialysis by developing ‘living membranes’ for cells-aided removal of uremic metabolites. Here, unique human conditionally immortalized proximal tubule epithelial cell (ciPTEC) monolayers were cultured on biofunctionalized MicroPES (polyethersulfone) hollow fiber membranes (HFM) and functionally tested using microfluidics. Tight monolayer formation was demonstrated by abundant zonula occludens-1 (ZO-1) protein expression along the tight junctions of matured ciPTEC on HFM. A clear barrier function of the monolayer was confirmed by limited diffusion of FITC-inulin. The activity of the organic cation transporter 2 (OCT2) in ciPTEC was evaluated in real-time using a perfusion system by confocal microscopy using 4-(4-(dimethylamino)styryl)-N-methylpyridinium iodide (ASP+) as a fluorescent substrate. Initial ASP+ uptake was inhibited by a cationic uremic metabolites mixture and by the histamine H2-receptor antagonist, cimetidine. In conclusion, a ‘living membrane’ of renal epithelial cells on MicroPES HFM with demonstrated active organic cation transport was successfully established as a first step in BAK engineering. PMID:26567716

  18. Medicinal Plants and Other Living Organisms with Antitumor Potential against Lung Cancer

    PubMed Central

    Monteiro, Luara de Sousa; Bastos, Katherine Xavier; Barbosa-Filho, José Maria; de Athayde-Filho, Petrônio Filgueiras; Diniz, Margareth de Fátima Formiga Melo; Sobral, Marianna Vieira

    2014-01-01

    Lung cancer is a disease with high morbidity and mortality rates. As a result, it is often associated with a significant amount of suffering and a general decrease in the quality of life. Herbal medicines are recognized as an attractive approach to lung cancer therapy with little side effects and are a major source of new drugs. The aim of this work was to review the medicinal plants and other living organisms with antitumor potential against lung cancer. The assays were conducted with animals and humans, and Lewis lung carcinoma was the most used experimental model. China, Japan, South Korea, and Ethiopia were the countries that most published studies of species with antitumor activity. Of the 38 plants evaluated, 27 demonstrated antitumor activity. In addition, six other living organisms were cited for antitumor activity against lung cancer. Mechanisms of action, combination with chemotherapeutic drugs, and new technologies to increase activity and reduce the toxicity of the treatment are discussed. This review was based on the NAPRALERT databank, Web of Science, and Chemical Abstracts. This work shows that natural products from plants continue to be a rich source of herbal medicines or biologically active compounds against cancer. PMID:25147575

  19. Human proximal tubule epithelial cells cultured on hollow fibers: living membranes that actively transport organic cations.

    PubMed

    Jansen, J; De Napoli, I E; Fedecostante, M; Schophuizen, C M S; Chevtchik, N V; Wilmer, M J; van Asbeck, A H; Croes, H J; Pertijs, J C; Wetzels, J F M; Hilbrands, L B; van den Heuvel, L P; Hoenderop, J G; Stamatialis, D; Masereeuw, R

    2015-01-01

    The bioartificial kidney (BAK) aims at improving dialysis by developing 'living membranes' for cells-aided removal of uremic metabolites. Here, unique human conditionally immortalized proximal tubule epithelial cell (ciPTEC) monolayers were cultured on biofunctionalized MicroPES (polyethersulfone) hollow fiber membranes (HFM) and functionally tested using microfluidics. Tight monolayer formation was demonstrated by abundant zonula occludens-1 (ZO-1) protein expression along the tight junctions of matured ciPTEC on HFM. A clear barrier function of the monolayer was confirmed by limited diffusion of FITC-inulin. The activity of the organic cation transporter 2 (OCT2) in ciPTEC was evaluated in real-time using a perfusion system by confocal microscopy using 4-(4-(dimethylamino)styryl)-N-methylpyridinium iodide (ASP(+)) as a fluorescent substrate. Initial ASP(+) uptake was inhibited by a cationic uremic metabolites mixture and by the histamine H2-receptor antagonist, cimetidine. In conclusion, a 'living membrane' of renal epithelial cells on MicroPES HFM with demonstrated active organic cation transport was successfully established as a first step in BAK engineering. PMID:26567716

  20. Invited review: organic and conventionally produced milk-an evaluation of factors influencing milk composition.

    PubMed

    Schwendel, B H; Wester, T J; Morel, P C H; Tavendale, M H; Deadman, C; Shadbolt, N M; Otter, D E

    2015-02-01

    Consumer perception of organic cow milk is associated with the assumption that organic milk differs from conventionally produced milk. The value associated with this difference justifies the premium retail price for organic milk. It includes the perceptions that organic dairy farming is kinder to the environment, animals, and people; that organic milk products are produced without the use of antibiotics, added hormones, synthetic chemicals, and genetic modification; and that they may have potential benefits for human health. Controlled studies investigating whether differences exist between organic and conventionally produced milk have so far been largely equivocal due principally to the complexity of the research question and the number of factors that can influence milk composition. A main complication is that farming practices and their effects differ depending on country, region, year, and season between and within organic and conventional systems. Factors influencing milk composition (e.g., diet, breed, and stage of lactation) have been studied individually, whereas interactions between multiple factors have been largely ignored. Studies that fail to consider that factors other than the farming system (organic vs. conventional) could have caused or contributed to the reported differences in milk composition make it impossible to determine whether a system-related difference exists between organic and conventional milk. Milk fatty acid composition has been a central research area when comparing organic and conventional milk largely because the milk fatty acid profile responds rapidly and is very sensitive to changes in diet. Consequently, the effect of farming practices (high input vs. low input) rather than farming system (organic vs. conventional) determines milk fatty acid profile, and similar results are seen between low-input organic and low-input conventional milks. This confounds our ability to develop an analytical method to distinguish organic from conventionally produced milk and provide product verification. Lack of research on interactions between several influential factors and differences in trial complexity and consistency between studies (e.g., sampling period, sample size, reporting of experimental conditions) complicate data interpretation and prevent us from making unequivocal conclusions. The first part of this review provides a detailed summary of individual factors known to influence milk composition. The second part presents an overview of studies that have compared organic and conventional milk and discusses their findings within the framework of the various factors presented in part one. PMID:25497795

  1. The Influence of Electromagnetic Pollution on Living Organisms: Historical Trends and Forecasting Changes

    PubMed Central

    Żak, Arkadiusz; Koncicki, Andrzej; Piechocki, Janusz; Jakubiuk, Kazimierz; Tojza, Piotr; Jaworski, Jacek; Ambroziak, Dominik; Skarbek, Łukasz

    2015-01-01

    Current technologies have become a source of omnipresent electromagnetic pollution from generated electromagnetic fields and resulting electromagnetic radiation. In many cases this pollution is much stronger than any natural sources of electromagnetic fields or radiation. The harm caused by this pollution is still open to question since there is no clear and definitive evidence of its negative influence on humans. This is despite the fact that extremely low frequency electromagnetic fields were classified as potentially carcinogenic. For these reasons, in recent decades a significant growth can be observed in scientific research in order to understand the influence of electromagnetic radiation on living organisms. However, for this type of research the appropriate selection of relevant model organisms is of great importance. It should be noted here that the great majority of scientific research papers published in this field concerned various tests performed on mammals, practically neglecting lower organisms. In that context the objective of this paper is to systematise our knowledge in this area, in which the influence of electromagnetic radiation on lower organisms was investigated, including bacteria, E. coli and B. subtilis, nematode, Caenorhabditis elegans, land snail, Helix pomatia, common fruit fly, Drosophila melanogaster, and clawed frog, Xenopus laevis. PMID:25811025

  2. Conflict of Interest Policies for Organizations Producing a Large Number of Clinical Practice Guidelines

    PubMed Central

    Norris, Susan L.; Holmer, Haley K.; Burda, Brittany U.; Ogden, Lauren A.; Fu, Rongwei

    2012-01-01

    Background Conflict of interest (COI) of clinical practice guideline (CPG) sponsors and authors is an important potential source of bias in CPG development. The objectives of this study were to describe the COI policies for organizations currently producing a significant number of CPGs, and to determine if these policies meet 2011 Institute of Medicine (IOM) standards. Methodology/Principal Findings We identified organizations with five or more guidelines listed in the National Guideline Clearinghouse between January 1, 2009 and November 5, 2010. We obtained the COI policy for each organization from publicly accessible sources, most often the organization's website, and compared those polices to IOM standards related to COI. 37 organizations fulfilled our inclusion criteria, of which 17 (46%) had a COI policy directly related to CPGs. These COI policies varied widely with respect to types of COI addressed, from whom disclosures were collected, monetary thresholds for disclosure, approaches to management, and updating requirements. Not one organization's policy adhered to all seven of the IOM standards that were examined, and nine organizations did not meet a single one of the standards. Conclusions/Significance COI policies among organizations producing a large number of CPGs currently do not measure up to IOM standards related to COI disclosure and management. CPG developers need to make significant improvements in these policies and their implementation in order to optimize the quality and credibility of their guidelines. PMID:22629391

  3. Comparing the microbiological status of pre- and postharvest produce from small organic production.

    PubMed

    Xu, Aixia; Pahl, Donna M; Buchanan, Robert L; Micallef, Shirley A

    2015-06-01

    Consumption of locally, organically grown produce is increasing in popularity. Organic farms typically produce on a small scale, have limited resources, and adopt low technology harvest and postharvest handling practices. Data on the food safety risk associated with hand harvesting, field packing, and packing-house handling with minimal treatment, at this production scale, are lacking. We followed produce from small organic farms from the field through postharvest handling and packing. Pre- and postharvest produce (177 samples) and water (29 samples) were collected and analyzed quantitatively for Escherichia coli, total coliforms (TC), aerobic bacteria (APC), yeasts, molds (M), and enteric pathogens. No pathogens were recovered. E. coli was detected in 3 (3.6%) of 83 preharvest produce samples, 2 (6.3%) of 32 unwashed and 0 of 42 washed postharvest produce samples, and 10 (34.5%) of 29 water samples. No correlation was found between bacterial levels in irrigation water and those on produce. Postharvest handling without washing was a factor for APC and M counts on tomatoes, with lower frequencies postharvest. Postharvest handling with washing was a factor for leafy greens for TC counts, with higher frequencies postharvest. APC (P = 0.03) and yeast (P = 0.05) counts were higher in preharvest than in unwashed postharvest tomatoes. Washed postharvest leafy greens had higher M counts (P = 0.03) and other washed produce had higher TC counts (P = 0.01) than did their preharvest counterparts. Barriers were found to the use of sanitizer in wash water for leafy greens among small farms using organic practices. Hand harvesting and dry handling did not appear to be associated with a significant food safety risk, but washed leafy greens carried higher levels of some microbial indicators, possibly because of the lack of sanitizer in the wash water. The development of resources and materials customized for this sector of growers could enhance dissemination of information on best practices for handling of leafy greens. PMID:26038895

  4. Organic matter produced by algae and cyanobacteria: quantitative and qualitative characterization.

    PubMed

    Leloup, Maud; Nicolau, Rudy; Pallier, Virginie; Yéprémian, Claude; Feuillade-Cathalifaud, Geneviève

    2013-06-01

    This work aims at characterizing organic matter produced by an alga Euglena gracilis and a cyanobacteria Microcystis aeruginosa and assessing the evolution of its characteristics during growth. A culture medium was optimized. The species growth phases were monitored using both visible spectrophotometry and flow cytometry cell counting. Organic matter fractionation according to hydrophobicity and specific UV absorbance (SUVA) index were used to specifically characterize the produced algal organic matter (AOM). The AOM characteristics were both growth phase and species dependent. However, a similar evolution was observed. The hydrophilic fraction (HPI) was the major fraction whatever the growth phases and was almost the only one produced during lag and exponential phases. It represented around 75% of AOM during exponential phase and then decreased when the stationary phase appeared. It represented 46% and 60% of the AOM during late decline phase for the cyanobacteria and the alga respectively. The hydrophobic (HPO) and transphilic (TPH) fractions started to appear from the beginning of the stationary phase with more hydrophobic compounds coming from intracellular organic material of dying cells. HPO and TPH percentages still increased during the decline phase probably because of two additional processes: photo-dissolution and leaching of particulate organic matter from cells fragments. A comparison of AOM during late decline phase and natural organic matter (NOM) from Glane River (France) underlined that AOM was more hydrophilic and presented a lower SUVA for each fractions than NOM. However, the difference between NOM and AOM hydrophobicity narrowed during decline phase. PMID:24191597

  5. Biotreatment of produced water for removal of sulfides, organics, and toxicity

    SciTech Connect

    Rajganesh, B.; Selvaraj, P.T.; Manning, F.S.

    1995-12-31

    Water coproduced with petroleum may contain sulfides and organic constituents that give the water an aquatic toxicity preventing surface discharge. A simulated sour produced water and actual field samples of produced water were successfully biotreated with mixed cultures of Thiobacillus denitrificans and floc-forming heterotrophs. Complete removal of benzene, toluene, phenol, acetic acid, sulfides, and Microtox toxicity was achieved. These results indicate that a reactor system as simple in concept as a specialized activated sludge system can be used to treat produced water with these mixed contaminants, allowing surface discharge of the water for reuse.

  6. 77 FR 55417 - Standards for Living Organisms in Ships' Ballast Water Discharged in U.S. Waters

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-10

    ... Organisms in Ships' Ballast Water Discharged in U.S. Waters (BWDS) Final Rule (77 FR 35268). The rulemaking... (77 FR 17254). The Coast Guard is now publishing a document to advise the public that we received four... SECURITY Coast Guard 33 CFR Part 151 46 CFR Part 162 RIN 1625-AA32 Standards for Living Organisms in...

  7. Sampling from living organisms: section 3 in Sampling and experiments with biofilms in the environment: chapter 6

    USGS Publications Warehouse

    Kellogg, Christina A.

    2014-01-01

    Living organisms, unlike inanimate surfaces, seem to exert some control over their surface microbiota, in many cases maintaining conserved, species-specific microbial communities. Microbial ecologists seek to characterize and identify these microbes to understand the roles they are playing in the larger organism's biology.

  8. Blood Circulation Laboratory Investigations with Video Are Less Investigative than Instructional Blood Circulation Laboratories with Live Organisms

    ERIC Educational Resources Information Center

    Hoover, Mildred A.; Pelaez, Nancy J.

    2008-01-01

    Live organisms versus digital video of the organisms were used to challenge students' naive ideas and misconceptions about blood, the heart, and circulatory patterns. Three faculty members taught 259 grade 10 biology students in a California high school with students from diverse ethnolinguistic groups who were divided into 5 classes using…

  9. Blood Circulation Laboratory Investigations with Video Are Less Investigative than Instructional Blood Circulation Laboratories with Live Organisms

    ERIC Educational Resources Information Center

    Hoover, Mildred A.; Pelaez, Nancy J.

    2008-01-01

    Live organisms versus digital video of the organisms were used to challenge students' naive ideas and misconceptions about blood, the heart, and circulatory patterns. Three faculty members taught 259 grade 10 biology students in a California high school with students from diverse ethnolinguistic groups who were divided into 5 classes using…

  10. Associations of free-living bacteria and dissolved organic compounds in a plume of contaminated groundwater

    USGS Publications Warehouse

    Harvey, R.W.; Barber, L.B., II

    1992-01-01

    Associations of free-living bacteria (FLB) and dissolved organic contaminants in a 4-km-long plume of sewage-contaminated groundwater were investigated. Abundance of FLB in the core of the plume (as delineated by maximum specific conductance) steadily decreased in the direction of flow from a point 0.25 km downgradient from the source to the toe of the plume. At 0.25 km downgradient, FLB comprised up to 31% of the total bacterial population, but constituted < 7% of the population at 2 km downgradient. Abundance of FLB correlated strongly (r = 0.80 n = 23) with total dissolved organic carbon (DOC) in contaminated groundwater between 0.64 and 2.1 km downgradient, although distributions of individual contaminants such as di-, tri- and tetrachloroethene were highly variable, and their association with FLB less clear. Numbers of FLB in the downgradient portion of the plume which is contaminated with branched-chain alkylbenzenesulfonate (ABS) surfactants were low (< 5??108/L) in spite of relatively high levels of DOC (up to 4 mg/L). However, abundance of FLB correlated strongly with non-surfactant DOC along vertical transects through the plume. The ratio of FLB to DOC and the ratio of FLB to attached bacteria generally decreased in the direction of flow and, consequently, with the age of the organic contaminants.

  11. 7 CFR 205.302 - Calculating the percentage of organically produced ingredients.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Calculating the percentage of organically produced ingredients. 205.302 Section 205.302 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Standards, Inspections, Marketing Practices), DEPARTMENT OF...

  12. Pilot scale test of a produced water-treatment system for initial removal of organic compounds

    SciTech Connect

    Sullivan, Enid J; Kwon, Soondong; Katz, Lynn; Kinney, Kerry

    2008-01-01

    A pilot-scale test to remove polar and non-polar organics from produced water was performed at a disposal facility in Farmington NM. We used surfactant-modified zeolite (SMZ) adsorbent beds and a membrane bioreactor (MBR) in combination to reduce the organic carbon content of produced water prior to reverse osmosis (RO). Reduction of total influent organic carbon (TOC) to 5 mg/L or less is desirable for efficient RO system operation. Most water disposed at the facility is from coal-bed gas production, with oil production waters intermixed. Up to 20 gal/d of produced water was cycled through two SMZ adsorbent units to remove volatile organic compounds (BTEX, acetone) and semivolatile organic compounds (e.g., napthalene). Output water from the SMZ units was sent to the MBR for removal of the organic acid component of TOC. Removal of inorganic (Mn and Fe oxide) particulates by the SMZ system was observed. The SMZ columns removed up to 40% of the influent TOC (600 mg/L). BTEX concentrations were reduced from the initial input of 70 mg/L to 5 mg/L by the SMZ and to an average of 2 mg/L after the MBR. Removal rates of acetate (input 120-170 mg/L) and TOC (input up to 45 mg/L) were up to 100% and 92%, respectively. The water pH rose from 8.5 to 8.8 following organic acid removal in the MBR; this relatively high pH was likely responsible for observed scaling of the MBR internal membrane. Additional laboratory studies showed the scaling can be reduced by metered addition of acid to reduce the pH. Significantly, organic removal in the MBR was accomplished with a very low biomass concentration of 1 g/L throughout the field trial. An earlier engineering evaluation shows produced water treatment by the SMZ/MBR/RO system would cost from $0.13 to $0.20 per bbl at up to 40 gpm. Current estimated disposal costs for produced water are $1.75 to $4.91 per bbl when transportation costs are included, with even higher rates in some regions. Our results suggest that treatment by an SMZ/MBR/RO system may be a feasible alternative to current methods for produced water treatment and disposal.

  13. Unveiling TRPV1 Spatio-Temporal Organization in Live Cell Membranes

    PubMed Central

    Storti, Barbara; Di Rienzo, Carmine; Cardarelli, Francesco; Bizzarri, Ranieri; Beltram, Fabio

    2015-01-01

    Transient Receptor Potential Vanilloid 1 (TRPV1) is a non-selective cation channel that integrates several stimuli into nociception and neurogenic inflammation. Here we investigated the subtle TRPV1 interplay with candidate membrane partners in live cells by a combination of spatio-temporal fluctuation techniques and fluorescence resonance energy transfer (FRET) imaging. We show that TRPV1 is split into three populations with fairly different molecular properties: one binding to caveolin-1 and confined into caveolar structures, one actively guided by microtubules through selective binding, and one which diffuses freely and is not directly implicated in regulating receptor functionality. The emergence of caveolin-1 as a new interactor of TRPV1 evokes caveolar endocytosis as the main desensitization pathway of TRPV1 receptor, while microtubule binding agrees with previous data suggesting the receptor stabilization in functional form by these cytoskeletal components. Our results shed light on the hitherto unknown relationships between spatial organization and TRPV1 function in live-cell membranes. PMID:25764349

  14. Effect of flagellates on free-living bacterial abundance in an organically contaminated aquifer

    USGS Publications Warehouse

    Kinner, N.E.; Harvey, R.W.; Kazmierkiewicz-Tabaka, M.

    1997-01-01

    Little is known about the role of protists in the saturated subsurface. Porous media microcosms containing bacteria and protists, were used to determine whether flagellates from an organically contaminated aquifer could substantively affect the number of free- living bacteria (FLB). When flagellates were present, the 3-40% maximum breakthrough of fluorescent y labelled FLB injected into the microcosms was much lower than the 60-130% observed for killed controls Grazing and clearance rates (3-27 FLB flag-1 h-1 and 12-23 nI flag-1 h-1, respectively) calculated from the data were in the range reported for flagellates in other aqueous environments. The data provide evidence that flagellate bacterivory is an important control on groundwater FLB populations.

  15. Optimizing DNA staining by Hoechst 33342 for assessment of chromatin organization in living cells

    NASA Astrophysics Data System (ADS)

    Paillasson, Sylvain; Robert-Nicoud, Michel; Ronot, Xavier

    1995-02-01

    In recent years, there has been an increasing interest for applications of fluorescence measurements to studies on many physiological mechanisms in living cells. However, few studies have taken advantage of DNA quantification by fluorometry for dynamic assessment of chromatin organization. This type of approach involves both optimal conditions for DNA staining and the use of several investigation methods such as flow cytometry, image cytometry, laser scanning confocal microscopy and spectral imaging. In this context, this report describes a stoichiometric method for nuclear DNA specific staining, using bisbenzimidazole Hoechst 33342 associated with verapamil, a calcium membrane channel blocker. This method makes it possible to follow variations of nuclear DNA content in cells that are maintained alive.

  16. The interplay of biomolecules and water at the origin of the active behavior of living organisms

    NASA Astrophysics Data System (ADS)

    Del Giudice, E.; Stefanini, P.; Tedeschi, A.; Vitiello, G.

    2011-12-01

    It is shown that the main component of living matter, namely liquid water, is not an ensemble of independent molecules but an ensemble of phase correlated molecules kept in tune by an electromagnetic (e.m) field trapped in the ensemble. This field and the correlated potential govern the interaction among biomolecules suspended in water and are in turn affected by the chemical interactions of molecules. In particular, the phase of the coherent fields appears to play an important role in this dynamics. Recent experiments reported by the Montagnier group seem to corroborate this theory. Some features of the dynamics of human organisms, as reported by psychotherapy, holistic medicine and Eastern traditions, are analyzed in this frame and could find a rationale in this context.

  17. Assessment of chronic toxicity of petroleum and produced water components to marine organisms. Final technical summary

    SciTech Connect

    Cherr, G.N.; Higashi, R.M.; Shenker, J.M.

    1993-05-31

    The objectives of the report were: (1) to determine the effects of produced water exposure in early life stages of marine plants and animals, at the cellular, subcellular, and physiological levels; (2) to determine the effects of produced water exposure on reproduction in marine organisms; and (3) to develop non-invasive approaches for assessing reproductive impairment. The effects of produced water (PW) was assessed on development in three ecologically and economically important species, the purple sea urchin (Strongylocentrotus purpuratus), the giant kelp (macrocystis pyrifera), and tsahe California mussel (Mytilus califonrnianus). To determine the basis for effects of PW on these developing organisms, some fundamental studies were prerequisite. Furthermore, eggs and embryos from adults which were outplanted near the discharge were also studied. Finally, the biochemical response of embryos to PW was also defined.

  18. Laboratory and field evaluation of a pretreatment system for removing organics from produced water.

    PubMed

    Kwon, Soondong; Sullivan, Enid J; Katz, Lynn E; Bowman, Robert S; Kinney, Kerry A

    2011-09-01

    Co-produced water from the oil and gas industry accounts for a significant waste stream in the United States. This "produced water" is characterized by saline water containing a variety of pollutants, including water soluble and immiscible organics and many inorganic species. To reuse produced water, removal of both the inorganic dissolved solids and organic compounds is necessary. In this research, the effectiveness of a pretreatment system consisting of surfactant modified zeolite (SMZ) adsorption followed by a membrane bioreactor (MBR) was evaluated for simultaneous removal of carboxylates and hazardous substances, such as benzene, toluene, ethylbenzene, and xylenes (BTEX) from saline-produced water. A laboratory-scale MBR, operated at a 9.6-hour hydraulic residence time, degraded 92% of the carboxylates present in synthetic produced water. When BTEX was introduced simultaneously to the MBR system with the carboxylates, the system achieved 80 to 95% removal of BTEX via biodegradation. These results suggest that simultaneous biodegradation of both BTEX and carboxylate constituents found in produced water is possible. A field test conducted at a produced water disposal facility in Farmington, New Mexico confirmed the laboratory-scale results for the MBR and demonstrated enhanced removal of BTEX using a treatment train consisting of SMZ columns followed by the MBR. While most of the BTEX constituents of the produced water adsorbed onto the SMZ adsorption system, approximately 95% of the BTEX that penetrated the SMZ and entered the MBR was biodegraded in the MBR. Removal rates of acetate (influent concentrations of 120 to 170 mg/L) ranged from 91 to 100%, and total organic carbon (influent concentrations as high as 580 mg/L) ranged from 74 to 92%, respectively. Organic removal in the MBR was accomplished at a low biomass concentration of 1 g/L throughout the field trial. While the transmembrane pressure during the laboratory-scale tests was well-controlled, it rose substantially during the field test, where no pH control was implemented. The results suggest that pretreatment with an SMZ/MBR system can provide substantial removal of organic compounds present in produced water, a necessary first step for many water-reuse applications. PMID:22073732

  19. Immunogenicity of Live Attenuated B. pertussis BPZE1 Producing the Universal Influenza Vaccine Candidate M2e

    PubMed Central

    Kammoun, Hana; Roux, Xavier; Raze, Dominique; Debrie, Anne-Sophie; De Filette, Marina; Ysenbaert, Tine; Mielcarek, Nathalie; Saelens, Xavier; Fiers, Walter; Locht, Camille

    2013-01-01

    Background Intranasal delivery of vaccines directed against respiratory pathogens is an attractive alternative to parenteral administration. However, using this delivery route for inactivated vaccines usually requires the use of potent mucosal adjuvants, and no such adjuvant has yet been approved for human use. Methodology/Principal Findings We have developed a live attenuated Bordetella pertussis vaccine, called BPZE1, and show here that it can be used to present the universal influenza virus epitope M2e to the mouse respiratory tract to prime for protective immunity against viral challenge. Three copies of M2e were genetically fused to the N-terminal domain of filamentous hemagglutinin (FHA) and produced in recombinant BPZE1 derivatives in the presence or absence of endogenous full-length FHA. Only in the absence of FHA intranasal administration of the recombinant BPZE1 derivative induced antibody responses to M2e and effectively primed BALB/c mice for protection against influenza virus-induced mortality and reduced the viral load after challenge. Strong M2e-specific antibody responses and protection were observed after a single nasal administration with the recombinant BPZE1 derivative, followed by a single administration of M2e linked to a virus-like particle without adjuvant, whereas priming alone with the vaccine strain did not protect. Conclusions/Significance Using recombinant FHA-3M2e-producing BPZE1 derivatives for priming and the universal influenza M2e peptide linked to virus-like particles for boosting may constitute a promising approach for needle-free and adjuvant-free nasal vaccination against influenza. PMID:23555631

  20. Marine actinobacteria associated with marine organisms and their potentials in producing pharmaceutical natural products.

    PubMed

    Valliappan, Karuppiah; Sun, Wei; Li, Zhiyong

    2014-09-01

    Actinobacteria are ubiquitous in the marine environment, playing an important ecological role in the recycling of refractory biomaterials and producing novel natural products with pharmic applications. Actinobacteria have been detected or isolated from the marine creatures such as sponges, corals, mollusks, ascidians, seaweeds, and seagrass. Marine organism-associated actinobacterial 16S rRNA gene sequences, i.e., 3,003 sequences, deposited in the NCBI database clearly revealed enormous numbers of actinobacteria associated with marine organisms. For example, RDP classification of these sequences showed that 112 and 62 actinobacterial genera were associated with the sponges and corals, respectively. In most cases, it is expected that these actinobacteria protect the host against pathogens by producing bioactive compounds. Natural products investigation and functional gene screening of the actinobacteria associated with the marine organisms revealed that they can synthesize numerous natural products including polyketides, isoprenoids, phenazines, peptides, indolocarbazoles, sterols, and others. These compounds showed anticancer, antimicrobial, antiparasitic, neurological, antioxidant, and anti-HIV activities. Therefore, marine organism-associated actinobacteria represent an important resource for marine drugs. It is an upcoming field of research to search for novel actinobacteria and pharmaceutical natural products from actinobacteria associated with the marine organisms. In this review, we attempt to summarize the present knowledge on the diversity and natural products production of actinobacteria associated with the marine organisms, based on the publications from 1991 to 2013. PMID:25064352

  1. Live-cell Imaging of Sensory Organ Precursor Cells in Intact Drosophila Pupae

    PubMed Central

    Zitserman, Diana; Roegiers, Fabrice

    2011-01-01

    Since the discovery of Green Fluorescent Protein (GFP), there has been a revolutionary change in the use of live-cell imaging as a tool for understanding fundamental biological mechanisms. Striking progress has been particularly evident in Drosophila, whose extensive toolkit of mutants and transgenic lines provides a convenient model to study evolutionarily-conserved developmental and cell biological mechanisms. We are interested in understanding the mechanisms that control cell fate specification in the adult peripheral nervous system (PNS) in Drosophila. Bristles that cover the head, thorax, abdomen, legs and wings of the adult fly are individual mechanosensory organs, and have been studied as a model system for understanding mechanisms of Notch-dependent cell fate decisions. Sensory organ precursor (SOP) cells of the microchaetes (or small bristles), are distributed throughout the epithelium of the pupal thorax, and are specified during the first 12 hours after the onset of pupariation. After specification, the SOP cells begin to divide, segregating the cell fate determinant Numb to one daughter cell during mitosis. Numb functions as a cell-autonomous inhibitor of the Notch signaling pathway. Here, we show a method to follow protein dynamics in SOP cell and its progeny within the intact pupal thorax using a combination of tissue-specific Gal4 drivers and GFP-tagged fusion proteins 1,2.This technique has the advantage over fixed tissue or cultured explants because it allows us to follow the entire development of an organ from specification of the neural precursor to growth and terminal differentiation of the organ. We can therefore directly correlate changes in cell behavior to changes in terminal differentiation. Moreover, we can combine the live imaging technique with mosaic analysis with a repressible cell marker (MARCM) system to assess the dynamics of tagged proteins in mitotic SOPs under mutant or wildtype conditions. Using this technique, we and others have revealed novel insights into regulation of asymmetric cell division and the control of Notch signaling activation in SOP cells (examples include references 1-6,7 ,8). PMID:21654627

  2. Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity

    PubMed Central

    Haas, Andreas F.; Nelson, Craig E.; Wegley Kelly, Linda; Carlson, Craig A.; Rohwer, Forest; Leichter, James J.; Wyatt, Alex; Smith, Jennifer E.

    2011-01-01

    Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in the lagoonal reefs of Moorea, French Polynesia. Rates of photosynthesis, respiration, and dissolved organic carbon (DOC) release were assessed for several common benthic reef organisms from the backreef habitat. We assessed microbial community response to dissolved exudates of each benthic producer by measuring bacterioplankton growth, respiration, and DOC drawdown in two-day dark dilution culture incubations. Experiments were conducted for six benthic producers: three species of macroalgae (each representing a different algal phylum: Turbinaria ornata – Ochrophyta; Amansia rhodantha – Rhodophyta; Halimeda opuntia – Chlorophyta), a mixed assemblage of turf algae, a species of crustose coralline algae (Hydrolithon reinboldii) and a dominant hermatypic coral (Porites lobata). Our results show that all five types of algae, but not the coral, exuded significant amounts of labile DOC into their surrounding environment. In general, primary producers with the highest rates of photosynthesis released the most DOC and yielded the greatest bacterioplankton growth; turf algae produced nearly twice as much DOC per unit surface area than the other benthic producers (14.0±2.8 µmol h?1 dm?2), stimulating rapid bacterioplankton growth (0.044±0.002 log10 cells h?1) and concomitant oxygen drawdown (0.16±0.05 µmol L?1 h?1 dm?2). Our results demonstrate that benthic reef algae can release a significant fraction of their photosynthetically-fixed carbon as DOC, these release rates vary by species, and this DOC is available to and consumed by reef associated microbes. These data provide compelling evidence that benthic primary producers differentially influence reef microbial dynamics and biogeochemical parameters (i.e., DOC and oxygen availability, bacterial abundance and metabolism) in coral reef communities. PMID:22125645

  3. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity.

    PubMed

    Haas, Andreas F; Nelson, Craig E; Wegley Kelly, Linda; Carlson, Craig A; Rohwer, Forest; Leichter, James J; Wyatt, Alex; Smith, Jennifer E

    2011-01-01

    Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in the lagoonal reefs of Moorea, French Polynesia. Rates of photosynthesis, respiration, and dissolved organic carbon (DOC) release were assessed for several common benthic reef organisms from the backreef habitat. We assessed microbial community response to dissolved exudates of each benthic producer by measuring bacterioplankton growth, respiration, and DOC drawdown in two-day dark dilution culture incubations. Experiments were conducted for six benthic producers: three species of macroalgae (each representing a different algal phylum: Turbinaria ornata--Ochrophyta; Amansia rhodantha--Rhodophyta; Halimeda opuntia--Chlorophyta), a mixed assemblage of turf algae, a species of crustose coralline algae (Hydrolithon reinboldii) and a dominant hermatypic coral (Porites lobata). Our results show that all five types of algae, but not the coral, exuded significant amounts of labile DOC into their surrounding environment. In general, primary producers with the highest rates of photosynthesis released the most DOC and yielded the greatest bacterioplankton growth; turf algae produced nearly twice as much DOC per unit surface area than the other benthic producers (14.0±2.8 µmol h?¹ dm?²), stimulating rapid bacterioplankton growth (0.044±0.002 log10 cells h?¹) and concomitant oxygen drawdown (0.16±0.05 µmol L?¹ h?¹ dm?²). Our results demonstrate that benthic reef algae can release a significant fraction of their photosynthetically-fixed carbon as DOC, these release rates vary by species, and this DOC is available to and consumed by reef associated microbes. These data provide compelling evidence that benthic primary producers differentially influence reef microbial dynamics and biogeochemical parameters (i.e., DOC and oxygen availability, bacterial abundance and metabolism) in coral reef communities. PMID:22125645

  4. Organic and inorganic species in produced water: Implications for water reuse

    USGS Publications Warehouse

    Kharaka, Y.K.; Rice, C.A.

    2004-01-01

    Currently 20-30 billion bbl/yr of formation water are co-produced in the US with conventional oil and natural gas. The large database on the geochemistry of this produced water shows salinities that vary widely from ??? 5000 to > 350,000 mg/L TDS. Chloride, Na, and Ca are generally the dominant ions, and concentrations of Fe, Mn, B, NH3, and dissolved organics, including, BTEX, phenols and PAH may be relatively high. As an alternative to costly disposal, low salinity produced water is being considered for reclamation, especially in the arid western US. The cost of reclaiming this water to meet irrigation, industrial, and drinking water standards was evaluated in a 10 gpm pilot field study at Placerita oil field, CA. This produced water had low salinity but high concentration of Si and organics. Removal of B, Si, NH3, and especially organics from this water proved difficult, and the estimated treatment cost was high for water treated for industrial and municipal uses.

  5. Space Environment Survivability of Live Organisms: Results From a NASA Astrobiology Nanosatellite Mission

    NASA Astrophysics Data System (ADS)

    Santos, Orlando; Ehrenfreund, Pascale; Mancinelli, Rocco; Nicholson, Wayne; Ricco, Antonio

    NASA's Organism/Organic Exposure to Orbital Stresses, or O/OREOS, nanosatellite is a sci-ence demonstration mission that showcases achievements in using hardware from a technology development program led by the Small Spacecraft Division at NASA's Ames Research Center, Moffett Field, California. Continuing Ames' development of triple-cube nanosatellite tech-nology and flight systems, which includes the successful GeneSat-1 and PharmaSat missions, O/OREOS is constructed from off-the-shelf commercial and NASA-designed parts to create a fully self-contained, automated, stable, light-weight space science laboratory with innovative environment and power control techniques; sensors to monitor the levels of pressure, temper-ature, humidity, radiation and acceleration; and a communications system able to regularly accept commands from the ground and transmit data back to Earth for scientific analysis. The overall goal of the O/OREOS mission is to demonstrate the capability to do low-cost sci-ence experiments on autonomous nanosatellites in space in support of the Astrobiology Small Payloads program under the Planetary Science Division of the Science Mission Directorate at NASA Headquarters. The spacecraft houses two science payloads: the Space Environment Viability of Organics (SEVO) experiment will monitor the stability and changes in four classes of organic matter (results presented at another COSPAR session); and the Space Environment Survivability of Live Organisms (SESLO) experiment (presented here). SESLO will charac-terize the growth, activity, health, and ability of microorganisms to adapt to the stresses of the space environment. The experiment is sealed in a vessel at one atmosphere and contains two types of microbes commonly found in salt ponds and soil, in a dried and dormant state: Halorubrum chaoviator and Bacillus subtilis. After it reaches orbit, the experiment will initiate and begin to rehydrate and grow three sets of the microbes at three different times: a few days, three months, and six months after launch. Once the satellite is in its highly inclined orbit, the microbes are constantly being exposed to space's high-energy radiation while in micro-gravity. The SESLO experiment measures the microbes' population density as they consume the components of the nutrient medium; a metabolism indicator dye included in the medium changes color, enabling quantitative tracking of metabolic activity. Together, these data en-able determination of the effects of the combined exposure to space radiation and microgravity on organism growth, health and survival. The design of the spacecraft, its ability to support Astrobiology goals, and the actual spaceflight data obtained will be presented.

  6. Atomic force microscopy as nano-stethoscope to study living organisms, insects

    NASA Astrophysics Data System (ADS)

    Sokolov, Igor; Dokukin, Maxim; Guz, Nataliia

    2012-02-01

    Atomic force microscopy (AFM) is a known method to study various surfaces. Here we report on the use of AFM to study surface oscillations (coming from the work of internal organs) of living organisms, like insects. As an example, ladybird beetles (Hippodamia convergens) measured in different parts of the insect at picometer level. This allows us to record a much broader spectral range of possible surface vibrations (up to several kHz) than the previously studied oscillations due to breathing, heartbeat cycles, coelopulses, etc. (up to 5 -10 Hz). The used here AFM method allows collecting signal from the area as small as ˜100nm2 (0.0001?m2) with an example of noise level of (2±0.2)x10-3 nm r.m.s. at the range of frequencies >50Hz (potentially, up to a MHz). Application of this method to humans is discussed. The method, being a relatively non-invasive technique providing a new type of information, may be useful in developing of what could be called ``nanophysiology.''

  7. Advanced photoassisted atomic switches produced using ITO nanowire electrodes and molten photoconductive organic semiconductors.

    PubMed

    Klamchuen, Annop; Tanaka, Hirofumi; Tanaka, Daisuke; Toyama, Hirotaka; Meng, Gang; Rahong, Sakon; Nagashima, Kazuki; Kanai, Masaki; Yanagida, Takeshi; Kawai, Tomoji; Ogawa, Takuji

    2013-11-01

    Photoassisted atomic switches (PASs) are those produced using photoconductive organic materials. However, the use of solid photoconductive materials and the formation of a large Ag conductive bridge lead to the formation of large voids during the shrinking of Ag conductive bridges; this may degrade the performance of PASs. A low-melting-point organic semiconductor is used as a molten photoconductive material, and self-assembled ITO nanowires are used as transparent electrodes. Stable atomic switching is observed only under light irradiation. PMID:23943473

  8. Organic salt-assisted liquid-phase exfoliation of graphite to produce high-quality graphene

    NASA Astrophysics Data System (ADS)

    Du, Wencheng; Lu, Jie; Sun, Peipei; Zhu, Yinyan; Jiang, Xiaoqing

    2013-05-01

    Certain ordinary organic salts, such as edetate disodium, sodium tartrate, potassium sodium tartrate and sodium citrate were found to have universal and efficient assistant effect for liquid-phase exfoliation of graphite in common organic solvents to produce pristine graphene. Up to 123 times enhanced exfoliation efficiency was observed when sodium citrate was introduced into an exfoliation system consisting of natural graphite powder and dimethyl sulfoxide. TEM, AFM, Raman spectroscopy, EDX, TGA, and FTIR analysis showed graphite was successfully exfoliated into single or few-layer graphene nanosheets which were free of defects and oxides. The method is simple, effective, safe and economical.

  9. Challenges to the involvement of people living with HIV in community-based HIV/AIDS organizations in Ontario, Canada.

    PubMed

    Cain, Roy; Collins, Evan; Bereket, Tarik; George, Clemon; Jackson, Randy; Li, Alan; Prentice, Tracey; Travers, Robb

    2014-02-01

    The Greater Involvement of People Living with HIV/AIDS Principle (GIPA) has been a core commitment for many people involved in the community-based HIV/AIDS movement. GIPA refers to the inclusion of people living with HIV/AIDS in service delivery and decision-making processes that affect their lives. Despite its central importance to the movement, it has received little attention in the academic literature. Drawing on focus group discussions among staff members and volunteers of AIDS service organizations, activists, and community members, we explore challenges to the implementation of the GIPA principle in community-based HIV/AIDS organizations in Ontario, Canada. Our findings reveal ways in which implementing GIPA has become more complicated over recent years. Challenges relating to health, stigma and disclosure, evolving HIV/AIDS organizations, and GIPA-related tensions are identified. This paper considers our findings in light of previous research, and suggests some implications for practice. PMID:23724932

  10. Linking Quality Assurance to Performance Improvement to Produce a High Reliability Organization

    SciTech Connect

    Silvey, Andrea B.; Warrick, Louise H.

    2008-05-01

    Three basic change management models are currently used in healthcare to produce and sustain quality improvement. We have presented the context to determine where any particular organization stands within these paradigms. We also have introduced a change-management tool used to assess, plan, and monitor leadership effort and commitment to quality improvement and culture change activities, tracked as 'momentum for change.' This 'momentum' is measured at eight discrete levels, from recognizing a performance gap to officially implementing changes intended to improve quality.

  11. Formulating essential oil microemulsions as washing solutions for organic fresh produce production.

    PubMed

    Zhang, Linhan; Critzer, Faith; Davidson, P Michael; Zhong, Qixin

    2014-12-15

    Applications of plant-derived organic essential oils (EOs) as antimicrobials for post-harvest produce operations are limited by their low water solubility. To dissolve EOs in water, microemulsions were studied using two surfactants permitted for organic production, sucrose octanoate ester (SOE) and soy lecithin that were mixed at various mass ratios before dilution with water to 40% w/w. EOs were then mixed with the surfactant solution by hand shaking. Based on visual transparency, intermediate lecithin:SOE mass ratios favoured the formation of microemulsions, e.g., up to 4.0% clove bud oil at ratios of 2:8 and 3:7, and 4.0% cinnamon bark oil and 3.0% thyme oil at ratios of 2:8 and 1:9, respectively. Microemulsions with intermediate lecithin:SOE mass ratios had a relatively low viscosity and better ability to wet fresh produce surfaces. The microemulsions established in this work may be used as washing solutions to enhance the microbial safety of organic fresh produce. PMID:25038656

  12. Closely related phytoplankton species produce similar suites of dissolved organic matter

    PubMed Central

    Becker, Jamie W.; Berube, Paul M.; Follett, Christopher L.; Waterbury, John B.; Chisholm, Sallie W.; DeLong, Edward F.; Repeta, Daniel J.

    2014-01-01

    Production of dissolved organic matter (DOM) by marine phytoplankton supplies the majority of organic substrate consumed by heterotrophic bacterioplankton in the sea. This production and subsequent consumption converts a vast quantity of carbon, nitrogen, and phosphorus between organic and inorganic forms, directly impacting global cycles of these biologically important elements. Details regarding the chemical composition of DOM produced by marine phytoplankton are sparse, and while often assumed, it is not currently known if phylogenetically distinct groups of marine phytoplankton release characteristic suites of DOM. To investigate the relationship between specific phytoplankton groups and the DOM they release, hydrophobic phytoplankton-derived dissolved organic matter (DOMP) from eight axenic strains was analyzed using high-performance liquid chromatography coupled to mass spectrometry (HPLC-MS). Identification of DOM features derived from Prochlorococcus, Synechococcus, Thalassiosira, and Phaeodactylum revealed DOMP to be complex and highly strain dependent. Connections between DOMP features and the phylogenetic relatedness of these strains were identified on multiple levels of phylogenetic distance, suggesting that marine phytoplankton produce DOM that in part reflects its phylogenetic origin. Chemical information regarding the size and polarity ranges of features from defined biological sources was also obtained. Our findings reveal DOMP composition to be partially conserved among related phytoplankton species, and implicate marine DOM as a potential factor influencing microbial diversity in the sea by acting as a link between autotrophic and heterotrophic microbial community structures. PMID:24748874

  13. Design of homo-organic acid producing strains using multi-objective optimization.

    PubMed

    Kim, Tae Yong; Park, Jong Myoung; Kim, Hyun Uk; Cho, Kwang Myung; Lee, Sang Yup

    2015-03-01

    Production of homo-organic acids without byproducts is an important challenge in bioprocess engineering to minimize operation cost for separation processes. In this study, we used multi-objective optimization to design Escherichia coli strains with the goals of maximally producing target organic acids, while maintaining sufficiently high growth rate and minimizing the secretion of undesired byproducts. Homo-productions of acetic, lactic and succinic acids were targeted as examples. Engineered E. coli strains capable of producing homo-acetic and homo-lactic acids could be developed by taking this systems approach for the minimal identification of gene knockout targets. Also, failure to predict effective gene knockout targets for the homo-succinic acid production suggests that the multi-objective optimization is useful in assessing the suitability of a microorganism as a host strain for the production of a homo-organic acid. The systems metabolic engineering-based approach reported here should be applicable to the production of other industrially important organic acids. PMID:25542849

  14. Organic and inorganic composition and microbiology of produced waters from Pennsylvania shale gas wells

    USGS Publications Warehouse

    Akob, Denise M.; Cozzarelli, Isabelle M.; Dunlap, Darren S.; Rowan, Elisabeth L.; Lorah, Michelle M.

    2015-01-01

    Hydraulically fractured shales are becoming an increasingly important source of natural gas production in the United States. This process has been known to create up to 420 gallons of produced water (PW) per day, but the volume varies depending on the formation, and the characteristics of individual hydraulic fracture. PW from hydraulic fracturing of shales are comprised of injected fracturing fluids and natural formation waters in proportions that change over time. Across the state of Pennsylvania, shale gas production is booming; therefore, it is important to assess the variability in PW chemistry and microbiology across this geographical span. We quantified the inorganic and organic chemical composition and microbial communities in PW samples from 13 shale gas wells in north central Pennsylvania. Microbial abundance was generally low (66–9400 cells/mL). Non-volatile dissolved organic carbon (NVDOC) was high (7–31 mg/L) relative to typical shallow groundwater, and the presence of organic acid anions (e.g., acetate, formate, and pyruvate) indicated microbial activity. Volatile organic compounds (VOCs) were detected in four samples (?1 to 11.7 ?g/L): benzene and toluene in the Burket sample, toluene in two Marcellus samples, and tetrachloroethylene (PCE) in one Marcellus sample. VOCs can be either naturally occurring or from industrial activity, making the source of VOCs unclear. Despite the addition of biocides during hydraulic fracturing, H2S-producing, fermenting, and methanogenic bacteria were cultured from PW samples. The presence of culturable bacteria was not associated with salinity or location; although organic compound concentrations and time in production were correlated with microbial activity. Interestingly, we found that unlike the inorganic chemistry, PW organic chemistry and microbial viability were highly variable across the 13 wells sampled, which can have important implications for the reuse and handling of these fluids

  15. Search for pair-produced long-lived neutral particles decaying to jets in the ATLAS hadronic calorimeter in pp collisions at ?{ s} = 8 TeV

    NASA Astrophysics Data System (ADS)

    Aad, G.; Abbott, B.; Abdallah, J.; Abdel Khalek, S.; Abdinov, O.; Aben, R.; Abi, B.; Abolins, M.; AbouZeid, O. S.; Abramowicz, H.; Abreu, H.; Abreu, R.; Abulaiti, Y.; Acharya, B. S.; Adamczyk, L.; Adams, D. L.; Adelman, J.; Adomeit, S.; Adye, T.; Agatonovic-Jovin, T.; Aguilar-Saavedra, J. A.; Agustoni, M.; Ahlen, S. P.; Ahmadov, F.; Aielli, G.; Akerstedt, H.; Åkesson, T. P. A.; Akimoto, G.; Akimov, A. V.; Alberghi, G. L.; Albert, J.; Albrand, S.; Alconada Verzini, M. J.; Aleksa, M.; Aleksandrov, I. N.; Alexa, C.; Alexander, G.; Alexandre, G.; Alexopoulos, T.; Alhroob, M.; Alimonti, G.; Alio, L.; Alison, J.; Allbrooke, B. M. M.; Allison, L. J.; Allport, P. P.; Aloisio, A.; Alonso, A.; Alonso, F.; Alpigiani, C.; Altheimer, A.; Alvarez Gonzalez, B.; Alviggi, M. G.; Amako, K.; Amaral Coutinho, Y.; Amelung, C.; Amidei, D.; Amor Dos Santos, S. P.; Amorim, A.; Amoroso, S.; Amram, N.; Amundsen, G.; Anastopoulos, C.; Ancu, L. S.; Andari, N.; Andeen, T.; Anders, C. F.; Anders, G.; Anderson, K. J.; Andreazza, A.; Andrei, V.; Anduaga, X. S.; Angelidakis, S.; Angelozzi, I.; Anger, P.; Angerami, A.; Anghinolfi, F.; Anisenkov, A. V.; Anjos, N.; Annovi, A.; Antonaki, A.; Antonelli, M.; Antonov, A.; Antos, J.; Anulli, F.; Aoki, M.; Aperio Bella, L.; Apolle, R.; Arabidze, G.; Aracena, I.; Arai, Y.; Araque, J. P.; Arce, A. T. H.; Arguin, J.-F.; Argyropoulos, S.; Arik, M.; Armbruster, A. J.; Arnaez, O.; Arnal, V.; Arnold, H.; Arratia, M.; Arslan, O.; Artamonov, A.; Artoni, G.; Asai, S.; Asbah, N.; Ashkenazi, A.; Åsman, B.; Asquith, L.; Assamagan, K.; Astalos, R.; Atkinson, M.; Atlay, N. B.; Auerbach, B.; Augsten, K.; Aurousseau, M.; Avolio, G.; Azuelos, G.; Azuma, Y.; Baak, M. A.; Baas, A. E.; Bacci, C.; Bachacou, H.; Bachas, K.; Backes, M.; Backhaus, M.; Backus Mayes, J.; Badescu, E.; Bagiacchi, P.; Bagnaia, P.; Bai, Y.; Bain, T.; Baines, J. T.; Baker, O. K.; Balek, P.; Balli, F.; Banas, E.; Banerjee, Sw.; Bannoura, A. A. E.; Bansal, V.; Bansil, H. S.; Barak, L.; Baranov, S. P.; Barberio, E. L.; Barberis, D.; Barbero, M.; Barillari, T.; Barisonzi, M.; Barklow, T.; Barlow, N.; Barnett, B. M.; Barnett, R. M.; Barnovska, Z.; Baroncelli, A.; Barone, G.; Barr, A. J.; Barreiro, F.; Barreiro Guimarães da Costa, J.; Bartoldus, R.; Barton, A. E.; Bartos, P.; Bartsch, V.; Bassalat, A.; Basye, A.; Bates, R. L.; Batley, J. R.; Battaglia, M.; Battistin, M.; Bauer, F.; Bawa, H. S.; Beattie, M. D.; Beau, T.; Beauchemin, P. H.; Beccherle, R.; Bechtle, P.; Beck, H. P.; Becker, K.; Becker, S.; Beckingham, M.; Becot, C.; Beddall, A. J.; Beddall, A.; Bedikian, S.; Bednyakov, V. A.; Bee, C. P.; Beemster, L. J.; Beermann, T. A.; Begel, M.; Behr, K.; Belanger-Champagne, C.; Bell, P. J.; Bell, W. H.; Bella, G.; Bellagamba, L.; Bellerive, A.; Bellomo, M.; Belotskiy, K.; Beltramello, O.; Benary, O.; Benchekroun, D.; Bendtz, K.; Benekos, N.; Benhammou, Y.; Benhar Noccioli, E.; Benitez Garcia, J. A.; Benjamin, D. P.; Bensinger, J. R.; Benslama, K.; Bentvelsen, S.; Berge, D.; Bergeaas Kuutmann, E.; Berger, N.; Berghaus, F.; Beringer, J.; Bernard, C.; Bernat, P.; Bernius, C.; Bernlochner, F. U.; Berry, T.; Berta, P.; Bertella, C.; Bertoli, G.; Bertolucci, F.; Bertsche, C.; Bertsche, D.; Besana, M. I.; Besjes, G. J.; Bessidskaia Bylund, O.; Bessner, M.; Besson, N.; Betancourt, C.; Bethke, S.; Bhimji, W.; Bianchi, R. M.; Bianchini, L.; Bianco, M.; Biebel, O.; Bieniek, S. P.; Bierwagen, K.; Biesiada, J.; Biglietti, M.; Bilbao De Mendizabal, J.; Bilokon, H.; Bindi, M.; Binet, S.; Bingul, A.; Bini, C.; Black, C. W.; Black, J. E.; Black, K. M.; Blackburn, D.; Blair, R. E.; Blanchard, J.-B.; Blazek, T.; Bloch, I.; Blocker, C.; Blum, W.; Blumenschein, U.; Bobbink, G. J.; Bobrovnikov, V. S.; Bocchetta, S. S.; Bocci, A.; Bock, C.; Boddy, C. R.; Boehler, M.; Boek, T. T.; Bogaerts, J. A.; Bogdanchikov, A. G.; Bogouch, A.; Bohm, C.; Bohm, J.; Boisvert, V.; Bold, T.; Boldea, V.; Boldyrev, A. S.; Bomben, M.; Bona, M.; Boonekamp, M.; Borisov, A.; Borissov, G.; Borri, M.; Borroni, S.; Bortfeldt, J.; Bortolotto, V.; Bos, K.; Boscherini, D.; Bosman, M.; Boterenbrood, H.; Boudreau, J.; Bouffard, J.; Bouhova-Thacker, E. V.; Boumediene, D.; Bourdarios, C.; Bousson, N.; Boutouil, S.; Boveia, A.; Boyd, J.; Boyko, I. R.; Bozic, I.; Bracinik, J.; Brandt, A.; Brandt, G.; Brandt, O.; Bratzler, U.; Brau, B.; Brau, J. E.; Braun, H. M.; Brazzale, S. F.; Brelier, B.; Brendlinger, K.; Brennan, A. J.; Brenner, R.; Bressler, S.; Bristow, K.; Bristow, T. M.; Britton, D.; Brochu, F. M.; Brock, I.; Brock, R.; Bromberg, C.; Bronner, J.; Brooijmans, G.; Brooks, T.; Brooks, W. K.; Brosamer, J.; Brost, E.; Brown, J.; Bruckman de Renstrom, P. A.; Bruncko, D.; Bruneliere, R.; Brunet, S.; Bruni, A.; Bruni, G.; Bruschi, M.; Bryngemark, L.; Buanes, T.; Buat, Q.; Bucci, F.

    2015-04-01

    The ATLAS detector at the Large Hadron Collider at CERN is used to search for the decay of a scalar boson to a pair of long-lived particles, neutral under the Standard Model gauge group, in 20.3 fb-1 of data collected in proton-proton collisions at ?{ s} = 8 TeV. This search is sensitive to long-lived particles that decay to Standard Model particles producing jets at the outer edge of the ATLAS electromagnetic calorimeter or inside the hadronic calorimeter. No significant excess of events is observed. Limits are reported on the product of the scalar boson production cross section times branching ratio into long-lived neutral particles as a function of the proper lifetime of the particles. Limits are reported for boson masses from 100 GeV to 900 GeV, and a long-lived neutral particle mass from 10 GeV to 150 GeV.

  16. ``Living polymers'' in organic solvents : stress relaxation in bicopper tetracarboxylate/tert-butyl cyclohexane solutions

    NASA Astrophysics Data System (ADS)

    Terech, P.; Maldivi, P.; Dammer, C.

    1994-10-01

    Viscoelastic solutions of a bicopper tetracarboxylate complex in tert-butylcyclohexane have been studied by dynamic rheology in a wide range of concentrations (0.5-1.5 % volume fraction). The zero shear viscosity, the elastic modulus, the terminal stress relaxation time and the height of the high-frequency dip, in a Cole-Cole representation of the complex elastic modulus, follow scaling laws. The related exponents are discussed in the context of the physics of “living polymers” : a term used to describe worm-like species undergoing scission/recombination reactions competing mainly with the reptation motions of the chains. The current system, made up of molecular threads (17.5 Å diameter) of Cu2(O2C-CH(C2H5)C4H9)4 in the apolar solvent, is representative of a “living polymer” where, instead of mechanisms involving transient star polymeric crosslinks, a reversible scission mechanism prevails. The dynamics in the high-frequency range evolves from a regime where reptation is the dominant relaxation mechanism to a cross-over regime where “breathing” fluctuations and Rouse motions become important. Large modifications of the stress relaxation function occur for more concentrated systems. The binary system is the first example of a “living polymer” in an organic solvent and exhibits elastic moduli (G ? ca. 120 Pa à ? = 1 %) which are at least 20 times larger than those found for the aqueous “living polymer” systems. Les solutions viscoélastiques d'un tétracarboxylate binucléaire de cuivre dans le tert-butylcyclohexane sont étudiées par rhéologie en mode dynamique dans une gamme étendue de concentrations (0,5 %-15,5 %). La viscosité à gradient nul, le module élastique, le temps terminal de relaxation et la hauteur du puits à haute fréquence, dans une représentation Cole-Cole du module élastique complexe, suivent des lois d'échelles. Les exposants correspondants sont discutés dans le contexte de la physique des “polymères vivants" : un terme utilisé pour décrire des espèces vermiformes subissant des réactions de scission/recombinaison en compétition principalement avec les mouvements de reptation des chaînes. Le système constitué de fils moléculaires (17,5 Å de diamètre) de Cu2(O2C-CH(C2H5)C4H9)4 dans le solvant apolaire est typique de “polymères vivants” où le mécanisme de scission réversible prévaut plutôt que les mécanismes impliquant des nœuds transitoires branchés. La dynamique dans le domaine des hautes fréquences évolue d'un régime où la reptation est le mécanisme de relaxation dominant vers un régime intermédiaire où les modes de “respiration” et de Rouse deviennent importants. D'importantes modifications de la relaxation de contrainte se produisent pour les systèmes concentrés. Le système binaire est le premier exemple de “polymère vivant” en milieu organique et présente des modules élastiques (G ? ca. 120 Pa à ? = 1 %) qui sont au moins 20 fois plus grands que ceux des homologues aqueux.

  17. General principles for risk assessment of living modified organisms: lessons from chemical risk assessment.

    PubMed

    Hill, Ryan A; Sendashonga, Cyrie

    2003-01-01

    Modern biotechnology has led to the development and use of Living Modified Organisms (LMOs) for agriculture and other purposes. Regulators at the national level are increasingly depending on risk assessment as a tool for assessing potential adverse effects of LMOs on the environment and human health. In addition, the Cartagena Protocol on Biosafety, an international agreement expected to enter into force in the near future, requires risk assessment as the basis for decision-making regarding import of some LMOs. While LMO risk assessment is relatively new, there are other risk assessment disciplines which have developed over longer time periods. The field of assessment of the environmental and human health risks of chemicals is particularly well developed, and is similar in application to LMO risk assessment. This paper aims to draw lessons for LMO risk assessment from the vast experience with chemical risk assessment. Seven general principles are outlined which should serve as a useful checklist to guide assessments of risks posed by LMOs. PMID:15612274

  18. The space exposure platforms BIOPAN and EXPOSE to study living organisms in space

    NASA Astrophysics Data System (ADS)

    Schulte, W.

    BIOPAN and EXPOSE are two European space exposure platforms developed for the European Space Agency by Kayser-Threde GmbH Munich Germany to offer flight opportunities to the science community of exo astrobiology research in low earth orbit Both platforms are conceived for the research on the behaviour of living organisms in the environment of space and on simulated conditions of other planets Mars The conditions for a possible transfer of life between planets can be studied Both facilities can also be used for materials and components validation and as test bed for advanced technologies envisaged for future exploration missions radio-protection miniaturized devices electronic components Since 1992 BIOPAN has flown five times aboard the Russian FOTON re-entry capsule 25 experiments in exo astrobiology radiation biology and radiation dosimetry have been conducted so far The pan-shaped experiment container BIOPAN can be installed onto the outer surface of its carrier satellite The orbital flight duration is typically two weeks The re-entry capsule with its experiments is recovered after landing and the experiment samples are returned to the ground laboratories of the scientific investigators for post-flight analysis Experiments flown so far with BIOPAN include bacterial spores mixed with Martian soil analogues to test the alleged toxicity of the Martian soil while irradiated in space by solar UV at dose and wavelength levels comparable to those on Mars experiment MARSTOX permafrost soil samples with their embedded natural ancient

  19. RefSOFI for Mapping Nanoscale Organization of Protein-Protein Interactions in Living Cells.

    PubMed

    Hertel, Fabian; Mo, Gary C H; Duwé, Sam; Dedecker, Peter; Zhang, Jin

    2016-01-12

    It has become increasingly clear that protein-protein interactions (PPIs) are compartmentalized in nanoscale domains that define the biochemical architecture of the cell. Despite tremendous advances in super-resolution imaging, strategies to observe PPIs at sufficient resolution to discern their organization are just emerging. Here we describe a strategy in which PPIs induce reconstitution of fluorescent proteins (FPs) that are capable of exhibiting single-molecule fluctuations suitable for stochastic optical fluctuation imaging (SOFI). Subsequently, spatial maps of these interactions can be resolved in super-resolution in living cells. Using this strategy, termed reconstituted fluorescence-based SOFI (refSOFI), we investigated the interaction between the endoplasmic reticulum (ER) Ca(2+) sensor STIM1 and the pore-forming channel subunit ORAI1, a crucial process in store-operated Ca(2+) entry (SOCE). Stimulating SOCE does not appear to change the size of existing STIM1/ORAI1 interaction puncta at the ER-plasma membrane junctions, but results in an apparent increase in the number of interaction puncta. PMID:26748717

  20. Imaging Mitochondrial Organization in Living Primate Oocytes and Embryos using Multiphoton Microscopy

    NASA Astrophysics Data System (ADS)

    Squirrell, J. M.; Schramm, R. D.; Paprocki, A. M.; Wokosin, D. L.; Bavister, B. D.

    2003-06-01

    We employed multiphoton laser scanning microscopy (MPLSM) to image changes in mitochondrial distribution in living rhesus monkey embryos. This method of imaging does not impair development; thus, the same specimen can be visualized multiple times at various developmental stages. Not only does this increase the amount of information that can be gathered on a single specimen but it permits the correlation of early events with subsequent development in the same specimen. Here we demonstrate the utility of MPLSM for determining changes in mitochondrial organization at various developmental stages and show that rhesus zygotes possess a distinct accumulation of mitochondria between the pronuclei prior to syngamy. We present evidence that suggests that this pronuclear accumulation may be positively correlated with development to the blastocyst stage—in the same embryo—thereby illustrating how MPLSM can be used to correlate cellular dynamics of primate oocytes and early embryos with their developmental potential. Understanding the relationship between mitochondrial distribution and the subsequent development of mammalian embryos, particularly primates, will increase our ability to improve embryo culture technologies, including those used for human assisted reproduction.

  1. The influence of the pulsating electromagnetic fields (PEMF) on living organisms

    SciTech Connect

    Pekaric-Nadj, N.; Lazetic, B.; Sep, D.

    1991-03-11

    The authors treated 96 patients with pseudoartroses by means of PEMF with the efficiency of 86%. They also treated 19 patients with decubitus and had improvements in all cases. In 58 PEMF treated asthma patients 80% improved. In 41 patients suffering from angina pectoris 90% reduce the need for nitroglycerine lingualetes. In order to eliminate the influence of the placebo and the sinergy, they prepared some experiments with barely and wheat seeds. All this experiments were performed several times with very similar results: Barley seeds were pretreated by PEMF for 1 hour and then planted into Petri's dish. In the stimulated dish, after 72 hours of germination there were three times more seeds with 6 roots then in the control. The embryos of the stimulated dish were stronger and longer compared to the controls. In the other experiment, fungi inoculated wheat seeds were pretreated for 4 hours by PEMF. After 72 hours of germination in a Petri's dish the disease was inhibited compared to the control dish. From all this they conclude that almost every process in a living organism is affected and might be controlled by PEMF.

  2. Perceived risks of conventional and organic produce: pesticides, pathogens, and natural toxins.

    PubMed

    Williams, P R; Hammitt, J K

    2001-04-01

    Public risk perceptions and demand for safer food are important factors shaping agricultural production practices in the United States. Despite documented food safety concerns, little attempt has been made to elicit consumers' subjective risk judgments for a range of food safety hazards or to identify factors most predictive of perceived food safety risks. In this study, over 700 conventional and organic fresh produce buyers in the Boston area were surveyed for their perceived food safety risks. Survey results showed that consumers perceived relatively high risks associated with the consumption and production of conventionally grown produce compared with other public health hazards. For example, conventional and organic food buyers estimated the median annual fatality rate due to pesticide residues on conventionally grown food to be about 50 per million and 200 per million, respectively, which is similar in magnitude to the annual mortality risk from motor vehicle accidents in the United States. Over 90% of survey respondents also perceived a reduction in pesticide residue risk associated with substituting organically grown produce for conventionally grown produce, and nearly 50% perceived a risk reduction due to natural toxins and microbial pathogens. Multiple regression analyses indicate that only a few factors are consistently predictive of higher risk perceptions, including feelings of distrust toward regulatory agencies and the safety of the food supply. A variety of factors were found to be significant predictors of specific categories of food hazards, suggesting that consumers may view food safety risks as dissimilar from one another. Based on study findings, it is recommended that future agricultural policies and risk communication efforts utilize a comparative risk approach that targets a range of food safety hazards. PMID:11414540

  3. Improving Phosphorus Availability in an Acid Soil Using Organic Amendments Produced from Agroindustrial Wastes

    PubMed Central

    Ch'ng, Huck Ywih; Ahmed, Osumanu Haruna; Majid, Nik Muhamad Ab.

    2014-01-01

    In acid soils, soluble inorganic phosphorus is fixed by aluminium and iron. To overcome this problem, acid soils are limed to fix aluminium and iron but this practice is not economical. The practice is also not environmentally friendly. This study was conducted to improve phosphorus availability using organic amendments (biochar and compost produced from chicken litter and pineapple leaves, resp.) to fix aluminium and iron instead of phosphorus. Amending soil with biochar or compost or a mixture of biochar and compost increased total phosphorus, available phosphorus, inorganic phosphorus fractions (soluble inorganic phosphorus, aluminium bound inorganic phosphorus, iron bound inorganic phosphorus, redundant soluble inorganic phosphorus, and calcium bound phosphorus), and organic phosphorus. This was possible because the organic amendments increased soil pH and reduced exchangeable acidity, exchangeable aluminium, and exchangeable iron. The findings suggest that the organic amendments altered soil chemical properties in a way that enhanced the availability of phosphorus in this study. The amendments effectively fixed aluminium and iron instead of phosphorus, thus rendering phosphorus available by keeping the inorganic phosphorus in a bioavailable labile phosphorus pool for a longer period compared with application of Triple Superphosphate without organic amendments. PMID:25032229

  4. Organic and Inorganic Species in CBM Produced Water: Implications for Water Management Strategies

    NASA Astrophysics Data System (ADS)

    Kharaka, Y. K.; Rice, C. A.

    2003-12-01

    Coal-bed methane (CBM) wells currently produce close to one billion bbl of water annually and deliver about 8% of total natural gas in the USA. The salinity of this produced water generally is lower than that of water from conventional petroleum wells; salinity commonly is 1,000-20,000 mg/L, but ranges from 200 to 150,000 mg/L TDS. Most CBM wells produce Na-HCO3-Cl type water that is low in trace metals and has no reported NORMs. This water generally has no oil and grease and has relatively low (2-10 mg/L) dissolved organic carbon (DOC), but its organic composition has not been characterized in detail. The water is disposed of by injection into saline aquifers, through evaporation and/or percolation in disposal pits, road spreading, and surface discharge. Water that has low (<1,000 mg/L TDS) salinity and sodium adsorption ratio (SAR) is considered acceptable for irrigation, surface discharge and for injection into freshwater aquifers. Because groundwater associated with coal, especially with lignite and subbituminous coal, is known to contain a variety of toxic or potentially toxic organics, including hydroxyphenols and PAHs, the organic and inorganic compositions of CBM waters should be systematically characterized and their potential for harm to human health, crops and the environment carefully evaluated prior to its addition to existing water supplies. As an alternative to costly disposal, lower salinity produced water from high-yield CBM wells is being considered for reclamation. The treated water would be a valuable new water resource, especially in the arid western USA. The feasibility and cost of reclaiming produced water to meet irrigation, industrial and drinking water standards was evaluated in a 10 gpm pilot field study. The estimated treatment cost was high at about 0.39/bbl (3,000/acre-ft) for potable water, but would be substantially lower and competitive for irrigation and industrial uses in some arid regions of the USA.

  5. 77 FR 35268 - Standards for Living Organisms in Ships' Ballast Water Discharged in U.S. Waters

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-13

    ... concentration of living organisms in ships' ballast water discharged in waters of the United States (77 FR 17254). The Coast Guard also established an approval process for ballast water management systems (77 FR 17254...' Ballast Water Discharged in U.S. Waters AGENCY: Coast Guard, DHS. ACTION: Rule; announcement of...

  6. 77 FR 17253 - Standards for Living Organisms in Ships' Ballast Water Discharged in U.S. Waters

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-23

    ...The Coast Guard is amending its regulations on ballast water management by establishing a standard for the allowable concentration of living organisms in ships' ballast water discharged in waters of the United States. The Coast Guard is also amending its regulations for engineering equipment by establishing an approval process for ballast water management systems. These new regulations will......

  7. A ‘NanoSuit’ surface shield successfully protects organisms in high vacuum: observations on living organisms in an FE-SEM

    PubMed Central

    Takaku, Yasuharu; Suzuki, Hiroshi; Ohta, Isao; Tsutsui, Takami; Matsumoto, Haruko; Shimomura, Masatsugu; Hariyama, Takahiko

    2015-01-01

    Although extremely useful for a wide range of investigations, the field emission scanning electron microscope (FE-SEM) has not allowed researchers to observe living organisms. However, we have recently reported that a simple surface modification consisting of a thin extra layer, termed ‘NanoSuit’, can keep organisms alive in the high vacuum (10−5 to 10−7 Pa) of the SEM. This paper further explores the protective properties of the NanoSuit surface-shield. We found that a NanoSuit formed with the optimum concentration of Tween 20 faithfully preserves the integrity of an organism's surface without interfering with SEM imaging. We also found that electrostatic charging was absent as long as the organisms were alive, even if they had not been coated with electrically conducting materials. This result suggests that living organisms possess their own electrical conductors and/or rely on certain properties of the surface to inhibit charging. The NanoSuit seems to prolong the charge-free condition and increase survival time under vacuum. These findings should encourage the development of more sophisticated observation methods for studying living organisms in an FE-SEM. PMID:25631998

  8. A 'NanoSuit' surface shield successfully protects organisms in high vacuum: observations on living organisms in an FE-SEM.

    PubMed

    Takaku, Yasuharu; Suzuki, Hiroshi; Ohta, Isao; Tsutsui, Takami; Matsumoto, Haruko; Shimomura, Masatsugu; Hariyama, Takahiko

    2015-03-01

    Although extremely useful for a wide range of investigations, the field emission scanning electron microscope (FE-SEM) has not allowed researchers to observe living organisms. However, we have recently reported that a simple surface modification consisting of a thin extra layer, termed 'NanoSuit', can keep organisms alive in the high vacuum (10(-5) to 10(-7) Pa) of the SEM. This paper further explores the protective properties of the NanoSuit surface-shield. We found that a NanoSuit formed with the optimum concentration of Tween 20 faithfully preserves the integrity of an organism's surface without interfering with SEM imaging. We also found that electrostatic charging was absent as long as the organisms were alive, even if they had not been coated with electrically conducting materials. This result suggests that living organisms possess their own electrical conductors and/or rely on certain properties of the surface to inhibit charging. The NanoSuit seems to prolong the charge-free condition and increase survival time under vacuum. These findings should encourage the development of more sophisticated observation methods for studying living organisms in an FE-SEM. PMID:25631998

  9. Bacterial mutagenicity of pyrolysis tars produced from chloro-organic fuels.

    PubMed Central

    Mulholland, J A; Sarofim, A F; Longwell, J P; Lafleur, A L; Thilly, W G

    1994-01-01

    Droplets of toluene and three chlorinated organics, ortho-dichlorobenzene, 1,2-dichloroethane, and trichloroethylene, were pyrolyzed in pure nitrogen. The composition and bacterial mutagenicity of the product tars were measured. The presence of organic chlorine was found to affect both pyrolysis product tar composition and total tar mutagenicity. Pyrolysis in the absence of chlorine produced tars whose bacterial mutagenicity was found to be largely due to the presence of cyclopenta[cd]pyrene, fluoranthene, and benzo[a]pyrene. Small amounts of chlorine in the fuel (i.e., Cl/H molar ratios of less than 0.3) enhanced the formation of highly condensed polycyclic aromatic hydrocarbons (including cyclopenta[cd]pyrene) and increased tar mutagenicity. Larger amounts of organic chlorine (Cl/H ratios of between 0.3 and 0.6) resulted in significant yields of mono- and dichlorinated aromatics and higher levels of tar mutagenicity, which could not be accounted for by the presence of mutagens produced by pyrolysis in the absence of chlorine. Furthermore, unlike tars containing little or no chlorine, tars containing aryl chlorine were more mutagenic in the absence of added enzymes (intended to mimic in vivo mammalian metabolism) than in their presence. We hypothesize that at least one of the chlorinated aromatic products is strongly mutagenic. Two specific conditions that gave notably different results were a) the low-temperature (i.e., below 1400 K) pyrolysis of ortho-dichlorobenzene, which produced tri- and tetrachlorinated biphenyls almost exclusively; and b) the chlorine-rich pyrolysis of trichloroethylene, during which mostly perchloroaromatics were formed. Neither of these tars was found to mutate bacteria. PMID:8187720

  10. EMMC process for combined removal of organics, nitrogen and an odor producing substance.

    PubMed

    Yang, P Y; Su, R; Kim, S J

    2003-12-01

    In order to improve the process performance regarding the removal of organics, nitrogen, and an odor-causing compound (sulfide) contained in domestic wastewater, an entrapped-mixed-microbial cell (EMMC) with and without humic substances for both fixed and moving carrier reactors and conventional suspended growth culture (i.e. conventional activated sludge process) were investigated simultaneously. Both synthetic (simulated to the organics concentration of general domestic sewage) and actual domestic wastewater were investigated under operational conditions of 12 h of hydraulic retention time (HRT) with 1 h of aeration and 1 h of non-aeration, and 6 h of HRT with continuous aeration, at a room temperature of 25 +/- 2 degrees C. It was found that entrapping humic substances in the EMMC carriers had no impact on the removal of organics, nitrogen, and the odor-producing compound. Additionally, the performance of the EMMC moving carrier system for the removal of these pollutants is similar to that of the EMMC fixed carrier system. In general, the EMMC associated systems which provide high solids retention time achieve a better removal of chemical oxygen demand (COD), nitrogen, and the odor-producing substance than the suspended growth system for both HRTs of 6 h (continuous aeration) and 12 h (1 h of aeration and 1 h of non-aeration). Both the fixed and moving carrier EMMC processes, therefore, have the potential for improvement or replacement of the existing conventional activated sludge process with regard to improving the effluent qualities (such as COD, nitrogen and odor-producing compound) for reuse/disposal. PMID:14680899

  11. Moisture resistant and anti-reflection optical coatings produced by plasma polymerization of organic compounds

    NASA Technical Reports Server (NTRS)

    Hollahan, J. R.; Wydeven, T.

    1975-01-01

    The need for protective coatings on critical optical surfaces, such as halide crystal windows or lenses used in spectroscopy, has long been recognized. It has been demonstrated that thin, one micron, organic coatings produced by polymerization of flourinated monomers in low temperature gas discharge (plasma) exhibit very high degrees of moisture resistence, e.g., hundreds of hours protection for cesium iodide vs. minutes before degradation sets in for untreated surfaces. The index of refraction of these coatings is intermediate between that of the halide substrate and air, a condition for anti-reflection, another desirable property of optical coatings. Thus, the organic coatings not only offer protection, but improved transmittance as well. The polymer coating is non-absorbing over the range 0.4 to 40 microns with an exception at 8.0 microns, the expected absorption for C-F bonds.

  12. Why Do Organisms in the Atlantic Ocean Produce So Much CaCO3?

    NASA Astrophysics Data System (ADS)

    Toggweiler, J. R.

    2010-12-01

    Sediments in the Atlantic are richer in CaCO3 than sediments in the other oceans. Sediment trap observations show that sinking particles in the Atlantic also tend to have more CaCO3 in relation to organic carbon than sinking particles elsewhere. The reason for the extra production of CaCO3 has never been very clear. The Atlantic is unusual because it receives much more than its share of the global input of river water. River water adds alkalinity to the surface ocean while the production of CaCO3 takes it away. In this presentation a new tracer, called Alk*, is derived from the surface alkalinity distribution to highlight the impact of river inputs and the production of CaCO3. If the production of CaCO3 were evenly distributed across the ocean one would expect the Atlantic to have a higher level of Alk* becaused of its river inputs. We find instead that Alk* is lower in the middle of the Atlantic than almost any place else. This, of course, is consistent with the fact that organisms in the Atlantic produce a lot of CaCO3. Comparison with other areas with especially low values of Alk* (Red Sea and northern Arabian Sea) shows that the production of CaCO3 is highly correlated across the ocean with the surface salinity. Hence, we argue that organisms in the Atlantic produce a lot of CaCO3 simply because the Atlantic is so salty. Salty waters, by definition, have more CO3= ions, which increase the supersaturation with respect to calcite and aragonite. This finding, while extremely simple, has major implifications for the impact of ocean acidification on calcifying organisms.

  13. Molecular Crowding of Collagen: A Pathway to Produce Highly-Organized Collagenous Structures

    PubMed Central

    Saeidi, Nima; Karmelek, Kathryn N.; Paten, Jeffrey. A; Zareian, Ramin; DiMasi, Elaine

    2013-01-01

    Collagen in vertebrate animals is often arranged in alternating lamellae or in bundles of aligned fibrils which are designed to withstand in vivo mechanical loads. The formation of these organized structures is thought to result from a complex, large-area integration of individual cell motion and locally-controlled synthesis of fibrillar arrays via cell-surface fibripositors (direct matrix printing). The difficulty of reproducing such a process in vitro has prevented tissue engineers from constructing clinically useful load-bearing connective tissue directly from collagen. However, we and others have taken the view that long-range organizational information is potentially encoded into the structure of the collagen molecule itself, allowing the control of fibril organization to extend far from cell (or bounding) surfaces. We here demonstrate a simple, fast, cell-free method capable of producing highly-organized, anistropic collagen fibrillar lamellae de novo which persist over relatively long-distances (tens to hundreds of microns). Our approach to nanoscale organizational control takes advantage of the intrinsic physiochemical properties of collagen molecules by inducing collagen association through molecular crowding and geometric confinement. To mimic biological tissues which comprise planar, aligned collagen lamellae (e.g. cornea, lamellar bone or annulus fibrosus), type I collagen was confined to a thin, planar geometry, concentrated through molecular crowding and polymerized. The resulting fibrillar lamellae show a striking resemblance to native load-bearing lamellae in that the fibrils are small, generally aligned in the plane of the confining space and change direction en masse throughout the thickness of the construct. The process of organizational control is consistent with embryonic development where the bounded planar cell sheets produced by fibroblasts suggest a similar confinement/concentration strategy. Such a simple approach to nanoscale organizational control of structure not only makes de novo tissue engineering a possibility, but also suggests a clearer pathway to organization for fibroblasts than direct matrix printing. PMID:22846420

  14. Organically versus conventionally grown produce: Common production inputs, nutritional quality, and nitrogen delivery between the two systems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    One distinguishing and over-ridding conclusion found in reviews comparing organically vs. conventionally grown produce is that variables shared alike by organic and conventional produce during production, harvest and post-harvest handling and storage were not applied. As a result, accurate and mean...

  15. CARS microscopy for the monitoring of fat deposition mechanisms in a living organism

    NASA Astrophysics Data System (ADS)

    Enejder, Annika; Hellerer, Thomas; Hillertz, Per; Brackmann, Christian; Axäng, Claes; Pilon, Marc

    2006-02-01

    We introduce near-infrared Coherent Anti-Stokes Raman Scattering (CARS) microscopy as a method for the monitoring of fat deposition in a living organism by directly probing the CH II vibration of the lipids without the need for staining or labeling. This study nicely brings forward all the advantages of the technique: deep probe depth, low excitation powers, high 3-dimensional resolution, and visualization without the interference of exogenous label molecules, or fixation and staining procedures. Differences in fat deposition during the life cycle of the nematode Caenorhabditis elegans were evaluated quantitatively from the CARS microscopy images, showing that the technique can be used to study mechanisms that regulate lipid storage. Beside the wild type nematode, the feeding-deficient mutant pha-3 was studied. It was shown that the embryonal accumulation of energy stores is enough for the development of a full-sized pre-adult larva, being possible also for the mutant. However, the volume density of lipid stores at the fourth and last pre-adult development stage seems to determine its adult body size. Whereas the wild type larva maintains its size when becoming adult, though at the cost of reduced lipid density, the feeding deficient mutant instead has to reduce its body size in order to reach the same volume density of lipid stores. Both strains start off their adult life with a volume fraction of lipid stores corresponding to 6-7%; the wild type with a radius of 24+/-2 µm and the pha-3 mutant with a significantly smaller radius of 16+/-3 ?m.

  16. Ingestion of Salmonella enterica Serotype Poona by a Free-Living Nematode, Caenorhabditis elegans, and Protection against Inactivation by Produce Sanitizers

    PubMed Central

    Caldwell, Krishaun N.; Adler, Barbara B.; Anderson, Gary L.; Williams, Phillip L.; Beuchat, Larry R.

    2003-01-01

    Free-living nematodes are known to ingest food-borne pathogens and may serve as vectors to contaminate preharvest fruits and vegetables. Caenorhabditis elegans was selected as a model to study the effectiveness of sanitizers in killing Salmonella enterica serotype Poona ingested by free-living nematodes. Aqueous suspensions of adult worms that had fed on S. enterica serotype Poona were treated with produce sanitizers. Treatment with 20 μg of free chlorine/ml significantly (α = 0.05) reduced the population of S. enterica serotype Poona compared to results for treating worms with water (control). However, there was no significant difference in the number of S. enterica serotype Poona cells surviving treatments with 20 to 500 μg of chlorine/ml, suggesting that reductions caused by treatment with 20 μg of chlorine/ml resulted from inactivation of S. enterica serotype Poona on the surface of C. elegans but not cells protected by the worm cuticle after ingestion. Treatment with Sanova (850 or 1,200 μg/ml), an acidified sodium chlorite sanitizer, caused reductions of 5.74 and 6.34 log10 CFU/worm, respectively, compared to reductions from treating worms with water. Treatment with 20 or 40 μg of Tsunami 200/ml, a peroxyacetic acid-based sanitizer, resulted in reductions of 4.83 and 5.34 log10 CFU/worm, respectively, compared to numbers detected on or in worms treated with water. Among the organic acids evaluated at a concentration of 2%, acetic acid was the least effective in killing S. enterica serotype Poona and lactic acid was the most effective. Treatment with up to 500 μg of chlorine/ml, 1% hydrogen peroxide, 2,550 μg of Sanova/ml, 40 μg of Tsunami 200/ml, or 2% acetic, citric, or lactic acid had no effect on the viability or reproductive behavior of C. elegans. Treatments were also applied to cantaloupe rind and lettuce inoculated with S. enterica serotype Poona or C. elegans that had ingested S. enterica serotype Poona. Protection of ingested S. enterica serotype Poona against sanitizers applied to cantaloupe was not evident; however, ingestion afforded protection of the pathogen on lettuce. These results indicate that S. enterica serotype Poona ingested by C. elegans may be protected against treatment with chlorine and other sanitizers, although the basis for this protection remains unclear. PMID:12839787

  17. From microbial biomass compounds to non-living soil organic matter - Microbial biomass as a significant source for soil organic matter formation

    NASA Astrophysics Data System (ADS)

    Miltner, A.; Kindler, R.; Hoffmann-Jäniche, C.; Schmidt-Brücken, B.; Kästner, M.

    2009-04-01

    Soil organic matter is one of the most important pools of the global carbon cycle. Recently, it has been suggested that microbial biomass is a significant source for the formation of refractory organic matter. We tested the relevance of this source by incubation of soil with 13C-labeled Escherichia coli cells. We traced the labeled carbon in fatty acids and amino acids, both in the microbial biomass and in the bulk soil. We also localized cells and their debris by scanning electron microscopy. Although we could not detect any living cells after 100 days, about 50% of the carbon remained in the soil after 224 days. The amount of label in the fatty acids indicated that microbial lipids were degraded faster than the bulk microbial biomass. Their labeling pattern showed that they were redistributed from E. coli to the microbial food web and from the living biomass to non-living soil organic matter. In contrast, the label in the total amino acids did not decrease significantly during incubation. Proteins are thus surprisingly stable in soil, but they also shifted from microbial biomass to non-living soil organic matter. The scanning electron micrographs showed only isolated intact microbial cells in our soil, but patches of organic material of unknown origin which are about 20 - 50 nm2 in size were quite abundant. Dying microbial cells therefore are a significant carbon source for the formation of refractory organic material, but the morphology of the cells changes during degradation, as cell structures cannot be found frequently in soils.

  18. Surface enhanced Raman scattering on Tardigrada--towards monitoring and imaging molecular structures in live cryptobiotic organisms.

    PubMed

    Kneipp, Harald; Møbjerg, Nadja; Jørgensen, Aslak; Bohr, Henrik G; Hélix-Nielsen, Claus; Kneipp, Janina; Kneipp, Katrin

    2013-10-01

    Tardigrades are microscopic metazoans which are able to survive extreme physical and chemical conditions by entering a stress tolerant state called cryptobiosis. At present, the molecular mechanisms behind cryptobiosis are still poorly understood. We show that surface enhanced Raman scattering supported by plasmonic gold nanoparticles can measure molecular constituents and their local distribution in live tardigrades. Surface enhanced Raman signatures allow to differentiate between two species and indicate molecular structural differences between tardigrades in water and in a dry state. This opens new avenues for exploring cryptobiosis by studying molecular changes in live cryptobiotic organisms. PMID:23225705

  19. Organic compounds in produced waters from coalbed natural gas wells in the Powder River Basin, Wyoming, USA

    USGS Publications Warehouse

    Orem, W.H.; Tatu, C.A.; Lerch, H.E.; Rice, C.A.; Bartos, T.T.; Bates, A.L.; Tewalt, S.; Corum, M.D.

    2007-01-01

    The organic composition of produced water samples from coalbed natural gas (CBNG) wells in the Powder River Basin, WY, sampled in 2001 and 2002 are reported as part of a larger study of the potential health and environmental effects of organic compounds derived from coal. The quality of CBNG produced waters is a potential environmental concern and disposal problem for CBNG producers, and no previous studies of organic compounds in CBNG produced water have been published. Organic compounds identified in the produced water samples included: phenols, biphenyls, N-, O-, and S-containing heterocyclic compounds, polycyclic aromatic hydrocarbons (PAHs), aromatic amines, various non-aromatic compounds, and phthalates. Many of the identified organic compounds (phenols, heterocyclic compounds, PAHs) are probably coal-derived. PAHs represented the group of organic compounds most commonly observed. Concentrations of total PAHs ranged up to 23 ??g/L. Concentrations of individual compounds ranged from about 18 to <0.01 ??g/L. Temporal variability of organic compound concentrations was documented, as two wells with relatively high organic compound contents in produced water in 2001 had much lower concentrations in 2002. In many areas, including the PRB, coal strata provide aquifers for drinking water wells. Organic compounds observed in produced water are also likely present in drinking water supplied from wells in the coal. Some of the organic compounds identified in the produced water samples are potentially toxic, but at the levels measured in these samples are unlikely to have acute health effects. The human health effects of low-level, chronic exposure to coal-derived organic compounds in drinking water are currently unknown. Continuing studies will evaluate possible toxic effects from low level, chronic exposure to coal-derived organic compounds in drinking water supplies.

  20. Community structure evolution and enrichment of glycogen-accumulating organisms producing polyhydroxyalkanoates from fermented molasses.

    PubMed

    Pisco, Ana R; Bengtsson, Simon; Werker, Alan; Reis, Maria A M; Lemos, Paulo C

    2009-07-01

    An open mixed culture was enriched with glycogen-accumulating organisms (GAOs) by using a sequencing batch reactor and treating an agroindustrial waste (sugar cane molasses) under cyclic anaerobic-aerobic conditions. Over a 1-year operating period, the culture exhibited a very stable GAO phenotype with an average polyhydroxyalkanoate (PHA) content of 17% total suspended solids. However, the GAO microbial community evolved over the course of operation to a culture exhibiting unusual characteristics in producing PHAs comprised of short-chain-length monomers, namely, 3-hydroxybutyrate, 3-hydroxy-2-methylbutyrate, 3-hydroxyvalerate, and 3-hydroxy-2-methylvalerate, and also, up to 31 mol% of the medium-chain-length (MCL) monomer 3-hydroxyhexanoate (3HHx). Microbial community analysis by fluorescence in situ hybridization revealed a concurrent long-term drift in the GAO community balance, from mainly "Candidatus Competibacter phosphatis" to mainly Defluviicoccus vanus-related organisms. The production of 3HHx was confirmed by (13)C nuclear magnetic resonance (NMR) and appeared to be related to the increased presence of D. vanus-related GAOs. These results suggest a broadened spectrum of material, chemical, and mechanical properties that can be achieved for biopolymers produced by open mixed cultures from fermented waste. The increased spectrum of polymer properties brings a wider scope of potential applications. PMID:19465533

  1. Community Structure Evolution and Enrichment of Glycogen-Accumulating Organisms Producing Polyhydroxyalkanoates from Fermented Molasses▿

    PubMed Central

    Pisco, Ana R.; Bengtsson, Simon; Werker, Alan; Reis, Maria A. M.; Lemos, Paulo C.

    2009-01-01

    An open mixed culture was enriched with glycogen-accumulating organisms (GAOs) by using a sequencing batch reactor and treating an agroindustrial waste (sugar cane molasses) under cyclic anaerobic-aerobic conditions. Over a 1-year operating period, the culture exhibited a very stable GAO phenotype with an average polyhydroxyalkanoate (PHA) content of 17% total suspended solids. However, the GAO microbial community evolved over the course of operation to a culture exhibiting unusual characteristics in producing PHAs comprised of short-chain-length monomers, namely, 3-hydroxybutyrate, 3-hydroxy-2-methylbutyrate, 3-hydroxyvalerate, and 3-hydroxy-2-methylvalerate, and also, up to 31 mol% of the medium-chain-length (MCL) monomer 3-hydroxyhexanoate (3HHx). Microbial community analysis by fluorescence in situ hybridization revealed a concurrent long-term drift in the GAO community balance, from mainly “Candidatus Competibacter phosphatis” to mainly Defluviicoccus vanus-related organisms. The production of 3HHx was confirmed by 13C nuclear magnetic resonance (NMR) and appeared to be related to the increased presence of D. vanus-related GAOs. These results suggest a broadened spectrum of material, chemical, and mechanical properties that can be achieved for biopolymers produced by open mixed cultures from fermented waste. The increased spectrum of polymer properties brings a wider scope of potential applications. PMID:19465533

  2. Cooperative Networks: Altruism, Group Solidarity, Reciprocity, and Sanctioning in Ugandan Producer Organizations.

    PubMed

    Baldassarri, Delia

    2015-09-01

    Repeated interaction and social networks are commonly considered viable solutions to collective action problems. This article identifies and systematically measures four general mechanisms--that is, generalized altruism, group solidarity, reciprocity, and the threat of sanctioning--and tests which of them brings about cooperation in the context of Ugandan producer organizations. Using an innovative methodological framework that combines "lab-in-the-field" experiments with survey interviews and complete social networks data, the article goes beyond the assessment of a relationship between social networks and collective outcomes to study the mechanisms that favor cooperative behavior. The article first establishes a positive relationship between position in the network structure and propensity to cooperate in the producer organization and then uses farmers' behavior in dictator and public goods games to test different mechanisms that may account for such a relationship. Results show that cooperation is induced by patterns of reciprocity that emerge through repeated interaction rather than other-regarding preferences like altruism or group solidarity. PMID:26594712

  3. 7 CFR 205.305 - Multi-ingredient packaged products with less than 70 percent organically produced ingredients.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... Practices), DEPARTMENT OF AGRICULTURE (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC... 7 Agriculture 3 2010-01-01 2010-01-01 false Multi-ingredient packaged products with less than 70 percent organically produced ingredients. 205.305 Section 205.305 Agriculture Regulations of...

  4. In situ detection, by spin trapping, of hydroxyl radical markers produced from ionizing radiation in the tumor of a living mouse.

    PubMed Central

    Halpern, H J; Yu, C; Barth, E; Peric, M; Rosen, G M

    1995-01-01

    Hydroxyl radicals are thought to be responsible for the toxicity associated with ionizing radiation in tissues. Measurements of hydroxyl radicals generated by ionizing radiation in cellular systems have failed thus far to elucidate higher-level homeostatic responses to this and other reactive oxygen species. Careful assessment of prior indirect hydroxyl radical assays in living tissues indicates that they are prone to a variety of artifacts, making all but the most qualitative relationships difficult to establish. This paper describes the detection of hydroxyl radicals produced during radiation in the leg tumor of a living mouse, where the free radicals evolve; detection uses low-frequency electron paramagnetic resonance in combination with in vivo spin trapping. To our knowledge, this is the first report of such a direct measurement of free radical production in the tissues of a living animals. Images Fig. 2 PMID:7846054

  5. Occurrence of biogenic amines in beers produced with malted organic Emmer wheat (Triticum dicoccum).

    PubMed

    Mozzon, Massimo; Boselli, Emanuele; Obiedziński, Mieczysław W; Frega, Natale G

    2015-01-01

    Because several groups of microorganisms are able to decarboxylate amino acids, the presence of biogenic amines (BA) can be seen as an index of the microbiological quality of the brewing process. BAs were quantified for the first time in the intermediate products and craft beers produced with malted organic Emmer wheat (Triticum dicoccum) in a small size brewery in order to assess the possible presence of critical control points related to biological hazard in the brewing process. BA levels in beers produced exclusively from malted organic Emmer wheat were between 15.4 and 25.2 mg l(-1) in the samples of light beer (Lt) and between 8.9 and 15.3 mg l(-1) in double malt beers (DM) ready for consumption (the beers stored for 90 days at 1-2°C). Cadaverine and tyramine were the main BAs in the Lt and DM beers, respectively. Increased concentrations of BAs seemed to be more related to the heat treatment of the processing product during mashing and wort boiling, rather than to the fermentation process. Much lower concentrations were found in finished beers obtained from 50% malted organic Emmer wheat and 50% malted barley (up to 3.2 mg l(-1)) or from 30% malted Emmer wheat (up to 8.3 mg l(-1)). Thus, Emmer wheat malt can be a useful alternative to wheat and spelt for the production of beer with a limited content of BA, if the processing technology is kept under control. PMID:25654207

  6. Organics Produced by Irradiation of Frozen and Liquid HCN Solutions: Implications for Chemical Evolution Studies

    NASA Astrophysics Data System (ADS)

    Colín-García, M.; Negrón-Mendoza, A.; Ramos-Bernal, S.

    2009-04-01

    Hydrogen cyanide (HCN), an important precursor of organic compounds, is widely present in extraterrestrial environments. HCN is also readily synthesized in prebiotic simulation experiments. To gain insight into the radiation chemistry of one of the most important and highly versatile constituents of cometary ices, we examined the behavior of over-irradiated frozen and liquid HCN solutions under ionizing radiation. The samples were exposed to gamma radiation at a dose range from 0 up to 419 kGy. Ultraviolet spectroscopy and gas chromatography were used to follow the process. The analyses confirmed that gamma-ray irradiation of liquid HCN solutions generates several organic products. Many of them are essential to life; we verified the presence of carboxylic acids (some of them members of the Krebs cycle) as well as free amino acids and urea. These are the first studies to reveal the presence of these compounds in experiments performed at low temperatures and bulk irradiation. Organic material was produced even at low temperatures and low radiation doses. This work strongly supports the presumption that, as a parent molecule, HCN played a central essential role in the process of chemical evolution on early Earth, comets, and other extraterrestrial environments.

  7. Associations of organic produce consumption with socioeconomic status and the local food environment: Multi-Ethnic Study of Atherosclerosis (MESA).

    PubMed

    Curl, Cynthia L; Beresford, Shirley A A; Hajat, Anjum; Kaufman, Joel D; Moore, Kari; Nettleton, Jennifer A; Diez-Roux, Ana V

    2013-01-01

    Neighborhood characteristics, such as healthy food availability, have been associated with consumption of healthy food. Little is known about the influence of the local food environment on other dietary choices, such as the decision to consume organic food. We analyzed the associations between organic produce consumption and demographic, socioeconomic and neighborhood characteristics in 4,064 participants aged 53-94 in the Multi-Ethnic Study of Atherosclerosis using log-binomial regression models. Participants were classified as consuming organic produce if they reported eating organic fruits and vegetables either "sometimes" or "often or always". Women were 21% more likely to consume organic produce than men (confidence interval [CI]: 1.12-1.30), and the likelihood of organic produce consumption was 13% less with each additional 10 years of age (CI: 0.84-0.91). Participants with higher education were significantly more likely to consume organic produce (prevalence ratios [PR] were 1.05 with a high school education, 1.39 with a bachelor's degree and 1.68 with a graduate degree, with less than high school as the reference group [1.00]). Per capita household income was marginally associated with produce consumption (p?=?0.06), with the highest income category more likely to consume organic produce. After adjustment for these individual factors, organic produce consumption was significantly associated with self-reported assessment of neighborhood produce availability (PR: 1.07, CI: 1.02-1.11), with an aggregated measure of community perception of the local food environment (PR: 1.08, CI: 1.00-1.17), and, to a lesser degree, with supermarket density (PR: 1.02: CI: 0.99-1.05). This research suggests that both individual-level characteristics and qualities of the local food environment are associated with having a diet that includes organic food. PMID:23936098

  8. Direct analysis of large living organism by megavolt electrostatic ionization mass spectrometry.

    PubMed

    Ng, Kwan-Ming; Tang, Ho-Wai; Man, Sin-Heng; Mak, Pui-Yuk; Choi, Yi-Ching; Wong, Melody Yee-Man

    2014-09-01

    A new ambient ionization method allowing the direct chemical analysis of living human body by mass spectrometry (MS) was developed. This MS method, namely Megavolt Electrostatic Ionization Mass Spectrometry, is based on electrostatic charging of a living individual to megavolt (MV) potential, illicit drugs, and explosives on skin/glove, flammable solvent on cloth/tissue paper, and volatile food substances in breath were readily ionized and detected by a mass spectrometer. PMID:24924518

  9. Direct Analysis of Large Living Organism by Megavolt Electrostatic Ionization Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Ng, Kwan-Ming; Tang, Ho-Wai; Man, Sin-Heng; Mak, Pui-Yuk; Choi, Yi-Ching; Wong, Melody Yee-Man

    2014-09-01

    A new ambient ionization method allowing the direct chemical analysis of living human body by mass spectrometry (MS) was developed. This MS method, namely Megavolt Electrostatic Ionization Mass Spectrometry, is based on electrostatic charging of a living individual to megavolt (MV) potential, illicit drugs, and explosives on skin/glove, flammable solvent on cloth/tissue paper, and volatile food substances in breath were readily ionized and detected by a mass spectrometer.

  10. [Water homeostasis in the living: molecular organization, osmoregulatory reflexes and evolution].

    PubMed

    Acher, R

    2002-06-01

    Human body weight is about 70% water; 55% of the water are in cells and 45% in extracellular compartments, mainly body fluids. Each compartment has its own osmoregulatory system. The mechanisms of intracellular osmoregulation likely appeared with the cell itself, i.e. in primitive prokaryotes, some 3.8 billions years ago. Osmotic stress responses observed in present-day bacteria, yeast, plant and animals cells in culture are very similar. Variations in the cell volume entail an extension or retraction of plasma membrane that activates mechanically-gated ion channels or mechanoreceptors. Some of them have been cloned from E. coli, the nematode C. elegans, the drosophila. Osmotic stress determines an intracellular cascade of transactivations, the last transcription factor binding to a Tonicity response element (TonE) of osmoprotective genes. These genes encode enzymes synthesizing compatible osmolytes that reequilibrate the osmotic pressure. Volume and osmolality of the biological fluids (le milieu intérieur) are regulated by neuroendocrine reflexes involving an afferent neural limb from baro- and osmo-receptors to hypothalamus and an efferent endocrine limb from neurosecretory cells to target cells, the hydroosmotic cells localized in osmoregulatory organs. Afferent signals trigger the biosynthesis and the processing of neurohypophyseal preprohormones in magnocellular neurons of the supraoptic and paraventricular nuclei of hypothalamus. Vasopressin in mammais and vasotocin in other vertebrates, endowed with antidiuretic and antinatriuretic properties, act on hydroosmotic cells localized in the nephron collecting duct. A specific vasopressin receptor, the V2 type receptor, located in the basolateral membrane of the principal cells, is coupled with an heterotridimeric protein Gs that activates adenylate cyclase. The cAMP product, in turn, stimulates the protein kinase A (PKA). The latter mobilizes 5 effectors located in the apical membrane: 1) the water channel aquaporin 2; 2) the urea transporter UT1; 3) the amiloride-sensitive sodium channel ENaC; 4) the inward-rectifying potassium channel ROM-K1; 5) the chloride channel CFTR. Modulation of each effector is ensured by an A kinase anchoring protein (AKAP). The effectors are transported from cytosol to apical membrane through transport vesicles equipped with membrane fusion proteins (such as VAMP2) that recognize specific apical membrane proteins (such as syntaxins). Water flows into principal cells from collecting duct lumen through AQP2 and flows out to interstitium through AQP3 and AQP4 and finally reachs blood circulation through AQP1 capillaries. Vasopressin orchestrates the live effectors so as to keep water and solutes reabsorptions in balance with volaemia and osmolality set points. PMID:12193876

  11. Excitation Emission Matrix Spectra (EEMS) of Chromophoric Dissolved Organic Matter Produced during Microbial Incubation

    NASA Astrophysics Data System (ADS)

    McDonald, N.; Nelson, N. B.; Parsons, R.

    2013-12-01

    The chromophoric or light-absorbing fraction of dissolved organic matter (CDOM) is present ubiquitously in natural waters and has a significant impact on ocean biogeochemistry, affecting photosynthesis and primary production as well direct and indirect photochemical reactions (Siegel et al., 2002; Nelson et al., 2007). It has been largely researched in the past few decades, however the exact chemical composition remains unknown. Instrumental methods of analysis including simultaneous excitation-emission fluorescence spectra have allowed for further insight into source and chemical composition. While certain excitation-emission peaks have been associated with ';marine' sources, they have not been exclusively linked to bacterial production of CDOM (Coble, 1996; Zepp et al., 2004). In this study, ';grazer diluted' seawater samples (70% 0.2μm filtered water; 30% whole water) were collected at the Bermuda Atlantic Time Series (BATS) site in the Sargasso Sea (31° 41' N; 64° 10' W) and incubated with an amendment of labile dissolved organic carbon (10μM C6H12O6), ammonium (1μM NH4Cl) and phosphate (0.1μM K2HPO4) to facilitate bacterial production. These substrates and concentrations have been previously shown to facilitate optimum bacterial and CDOM production (Nelson et al., 2004). Sample depths were chosen at 1m and 200m as water at these depths has been exposed to UV light (the Subtropical Mode Water at 200m has been subducted from the surface) and therefore has low initial concentrations of CDOM. After the samples were amended, they were incubated at in-situ temperatures in the dark for 72 hours, with bacteria counts, UV-Vis absorption and EEMS measurements taken at 6-8 hour intervals. Dissolved organic carbon (DOC) measurements were collected daily. For the surface water experiment specific bacteria populations were investigated using Fluorescence In-Situ Hybridization (FISH) analysis. Results showed a clear production of bacteria and production of CDOM, which can be linked to this bacterial production. FISH analysis showed percentage abundance of Pelagibacter ubique (SAR 11) and of Alteromonas. On-going and future work will ascertain if specific microbial communities produce CDOM more readily than others, and if these different populations produce varying fluorescence peaks, thus indicating a range of chromophoric groups being produced by bacteria. An additional suite of probes will be used for further FISH analysis to identify percentages of other populations, and seasonal/temporal variations will be investigated.

  12. Assembly of live micro-organisms on microstructured PDMS stamps by convective/capillary deposition for AFM bio-experiments

    NASA Astrophysics Data System (ADS)

    Dague, E.; Jauvert, E.; Laplatine, L.; Viallet, B.; Thibault, C.; Ressier, L.

    2011-09-01

    Immobilization of live micro-organisms on solid substrates is an important prerequisite for atomic force microscopy (AFM) bio-experiments. The method employed must immobilize the cells firmly enough to enable them to withstand the lateral friction forces exerted by the tip during scanning but without denaturing the cell interface. In this work, a generic method for the assembly of living cells on specific areas of substrates is proposed. It consists in assembling the living cells within the patterns of microstructured, functionalized poly-dimethylsiloxane (PDMS) stamps using convective/capillary deposition. This versatile approach is validated by applying it to two systems of foremost importance in biotechnology and medicine: Saccharomyces cerevisiae yeasts and Aspergillus fumigatus fungal spores. We show that this method allows multiplexing AFM nanomechanical measurements by force spectroscopy on S. cerevisiae yeasts and high-resolution AFM imaging of germinated Aspergillus conidia in buffer medium. These two examples clearly demonstrate the immense potential of micro-organism assembly on functionalized, microstructured PDMS stamps by convective/capillary deposition for performing rigorous AFM bio-experiments on living cells.

  13. Distribution of living benthic foraminifera off the Douro river (western Iberian margin): the importance of the terrestrial organic matter.

    NASA Astrophysics Data System (ADS)

    Bonnin, Jerome; Dessandier, Pierre-Antoine; Kim, Jung-Hyun; Gremare, Antoine; Deflandre, Bruno; Sinnighe-Damste, Jaap

    2014-05-01

    Living (stained) benthic foraminifera assemblages and geochemical characterization of the organic matter (phytopigments, amino acids, δ13Coc, BIT) were investigated on a cross-margin transect off the Douro River (Northern Portuguese margin) in order to assess the role of the quality of organic matter on the distribution of live benthic foraminifera. For this, 5 stations ranging from 50 to 2000 m depth were collected in March 2011 about one month after the Douro River annual flood. Faunal abundances generally decrease from the coast to the slope with maximum total densities of 3051 ind./50 cm3 in the mudbelt (Q50=32µm) at 100 m and minimum density of 63 ind./50 cm3 found at 500 m water depth where grain size is coarse (Q50=190µm). Faunas of the shallow most station are dominated by Ammonia becarii, Eggerella scabra, Bulimina aculeata and Nonion scaphum while N. scaphum and to a lesser extent Uvigerina bifurcata dominate the assemblages at 100 m. The deepest stations are dominated by Uvigerina mediterranea, Hoeglundina elegans and Reophax scorpiurus. In general, live benthic foraminiferal densities are higher where the indicators of organic matter are more concentrated. However, some species appear to have strong affinities with Chl-a (e.g., N. scaphum, U. bifurcata), while others (A. becarii, E. Scabra, B. aculeata) are more abundant where labile organic matter is high as show by the EHAA/THAA amino acid ratio. The species that show a good correlation with Chl-a also show affinity with organic matter of terrestrial origin as show by the δ13Coc suggesting 1) that Chl-a measured in the coastal zone is not only marine and 2) that land plant derived organic matter could be an important source of food for marine benthic communities.

  14. Distribution of palytoxin in coral reef organisms living in close proximity to an aggregation of Palythoa tuberculosa.

    PubMed

    Aratake, Satoe; Taira, Yosuke; Fujii, Takuma; Roy, Michael C; Reimer, James D; Yamazaki, Tomoko; Jenke-Kodama, Holger

    2016-03-01

    Palytoxin is a strong marine toxin that was first isolated from the zoantharian Palythoa toxica and later from other species of the genus Palythoa. How the toxin gets into the animal remains an unsolved question. To study the specificity of palytoxin distribution, the toxin content of Palythoa tuberculosa and other organisms living in close association on a coral reef in Okinawa were analysed by mass spectrometry. In contrast to earlier reports, palytoxin was only detected in P. tuberculosa colonies. PMID:26752673

  15. Insights into laccase producing organisms, fermentation states, purification strategies, and biotechnological applications.

    PubMed

    Forootanfar, Hamid; Faramarzi, Mohammad Ali

    2015-11-01

    Laccases are phenol oxidases belonging to the superfamily of multicopper oxidases and are found in bacteria, fungi, lichens, higher plants, and insects. Over the past few decades, laccases and laccase mediator systems (LMS) have found uses in a wide range of technological applications such as textile dye decolorization, industrial wastewater detoxification, pulp bleaching, chemical synthesis, and development of miniaturized biosensors. This has encouraged numerous studies to find and purify laccases with exploitable characteristics. The main aim of the present review is to summarize the rich literature data gained in recent years from the studies on laccases, focusing on the organisms that produce them, the methods used for screening, laccase activity assays, purification strategies, and the application of laccases as eco-friendly biocatalysts. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:1443-1463, 2015. PMID:26399693

  16. 7 CFR 205.302 - Calculating the percentage of organically produced ingredients.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... percent organic,” “organic,” or “made with organic (specified ingredients or food group(s)),” or that include organic ingredients must be calculated by: (1) Dividing the total net weight (excluding water and... (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC PROGRAM Labels, Labeling, and...

  17. 7 CFR 205.302 - Calculating the percentage of organically produced ingredients.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... percent organic,” “organic,” or “made with organic (specified ingredients or food group(s)),” or that include organic ingredients must be calculated by: (1) Dividing the total net weight (excluding water and... (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC PROGRAM Labels, Labeling, and...

  18. 7 CFR 205.302 - Calculating the percentage of organically produced ingredients.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... percent organic,” “organic,” or “made with organic (specified ingredients or food group(s)),” or that include organic ingredients must be calculated by: (1) Dividing the total net weight (excluding water and... (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC PROGRAM Labels, Labeling, and...

  19. 7 CFR 205.302 - Calculating the percentage of organically produced ingredients.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... percent organic,” “organic,” or “made with organic (specified ingredients or food group(s)),” or that include organic ingredients must be calculated by: (1) Dividing the total net weight (excluding water and... (CONTINUED) ORGANIC FOODS PRODUCTION ACT PROVISIONS NATIONAL ORGANIC PROGRAM Labels, Labeling, and...

  20. Volatile-organic molecular characterization of shale-oil produced water from the Permian Basin.

    PubMed

    Khan, Naima A; Engle, Mark; Dungan, Barry; Holguin, F Omar; Xu, Pei; Carroll, Kenneth C

    2016-04-01

    Growth in unconventional oil and gas has spurred concerns on environmental impact and interest in beneficial uses of produced water (PW), especially in arid regions such as the Permian Basin, the largest U.S. tight-oil producer. To evaluate environmental impact, treatment, and reuse potential, there is a need to characterize the compositional variability of PW. Although hydraulic fracturing has caused a significant increase in shale-oil production, there are no high-resolution organic composition data for the shale-oil PW from the Permian Basin or other shale-oil plays (Eagle Ford, Bakken, etc.). PW was collected from shale-oil wells in the Midland sub-basin of the Permian Basin. Molecular characterization was conducted using high-resolution solid phase micro extraction gas chromatography time-of-flight mass spectrometry. Approximately 1400 compounds were identified, and 327 compounds had a >70% library match. PW contained alkane, cyclohexane, cyclopentane, BTEX (benzene, toluene, ethylbenzene, and xylene), alkyl benzenes, propyl-benzene, and naphthalene. PW also contained heteroatomic compounds containing nitrogen, oxygen, and sulfur. 3D van Krevelen and double bond equivalence versus carbon number analyses were used to evaluate molecular variability. Source composition, as well as solubility, controlled the distribution of volatile compounds found in shale-oil PW. The salinity also increased with depth, ranging from 105 to 162 g/L total dissolved solids. These data fill a gap for shale-oil PW composition, the associated petroleomics plots provide a fingerprinting framework, and the results for the Permian shale-oil PW suggest that partial treatment of suspended solids and organics would support some beneficial uses such as onsite reuse and bio-energy production. PMID:26802271

  1. Pecuniary and Non-Pecuniary Incentives to Increase the Rate of Organ Donations from the Living: A Moral Exploration

    PubMed Central

    Barilan, Michael Y.

    2011-01-01

    This paper examines the morality of schemes of payment to live donors/sellers of organs for transplantation. Following empirical and historical evidence, it is argued that consent to sell organs is substantially different from consent to ordinary business transactions and that legalization of exchanges of organs with financial benefits deviates significantly from the scope of liberal toleration and liberal conceptions of human rights. Although altruistic giving is commendable, it is immoral for society to benefit from them without conferring to the donors benefits such as health and nursing insurance for life. Non-alienable and non-fungible benefits of this kind are moral as incentives to organ donation/giving. PMID:23908808

  2. High rate of intestinal colonization with extended-spectrum-beta-lactamase-producing organisms in household contacts of infected community patients.

    PubMed

    Valverde, Aránzazu; Grill, Fabio; Coque, Teresa M; Pintado, Vicente; Baquero, Fernando; Cantón, Rafael; Cobo, Javier

    2008-08-01

    Fecal carriage of extended-spectrum-beta-lactamase (ESBL)-producing organisms was detected in 70% of index cases of patients (n = 40) with community-acquired infections due to ESBL producers and reached 16.7% in household contacts (n = 54). A total of 66% of ESBL-producing organisms from index cases were indistinguishable from isolates from household contacts by pulsed-field gel electrophoresis. Patients with community infections and members of their households represent a reservoir for ESBL producers, increasing dispersal of resistance in healthy people. PMID:18562591

  3. Laboratory Investigations of the Complex Refractory Organic Material Produced from Irradiation of Pluto Ice Analogs

    NASA Technical Reports Server (NTRS)

    Materese, Christopher K.; Cruikshank, Dale P.; Sanford, Scott A.; Imanaka, Hiroshi

    2014-01-01

    Much of Pluto's surface consists of N2 ice with smaller amounts of CH4 and CO ices. Despite the low temperature (approximately 45K), chemistry can be driven in the surface ices by radiation processing such as cosmic ray bombardment. When cosmic rays strike the surface, much of their energy is dispersed in the form of secondary electrons, which in turn drive much of the resulting chemical reactions. Laboratory experiments designed to simulate the conditions on these icy bodies may provide insight into this chemistry. Significant progress has been made in the laboratory toward understanding the smaller, simple compounds produced in the solid phase by radiation processing of (N2, CH4, CO) ices (Bohn et al. 1994; Moore & Hudson 2003; Hodyss et al. 2011; Kim and Kaiser 2012). Recently Materese et al. (2014) used a variety of techniques to better characterize the refractory materials produced from the UV photo-irradiation of N2:CH4:CO ices. However, because Pluto's atmosphere is optically thick to Lyman-alpha UV radiation it is important to re-examine the results using an alternate radiation source. Our latest work has consisted of the analysis of refractory materials produced from the electron bombardment of low temperature N2(-), CH4(-), and CO(-)containing ices (100:1:1). The ice mixture was chosen to be analogous to the known surface ices on Pluto and the radiation source was chosen to mimic the secondary electrons produced by cosmic rays bombardment. The residues were studied using multiple chemical techniques including, infrared (IR) spectroscopy, X-ray absorption near-edge structure (XANES) spectroscopy, and gas chromatography coupled with mass spectrometry (GC-MS). The organic residues produced in these experiments can be seen as an analog for the refractory component of the surface of Pluto, and are compared with the residues previously obtained from UV photo-irradiation. UV and near- IR spectroscopy of the surfaces of Pluto and Charon during the encounter with NASA's New Horizons spacecraft in 2015, will give the first close-up measurements of ices and their photoproducts. Laboratory measurements and experiments will provide a better context for the data returned by the spacecraft.

  4. Laboratory Investigations of Complex Refractory Organic Material Produced from Irradiation of Pluto Ice Analogs

    NASA Astrophysics Data System (ADS)

    Materese, Christopher K.; Cruikshank, Dale P.; Sandford, Scott A.; Imanaka, Hiroshi

    2014-11-01

    Much of Pluto’s surface consists of N2 ice with smaller amounts of CH4 and CO ices. Despite the low temperature 45K), chemistry can be driven in the surface ices by radiation processing such as cosmic ray bombardment. When cosmic rays strike the surface, much of their energy is dispersed in the form of secondary electrons, which in turn drive much of the resulting chemical reactions. Laboratory experiments designed to simulate the conditions on these icy bodies may provide insight into this chemistry. Significant progress has been made in the laboratory toward understanding the smaller, simple compounds produced in the solid phase by radiation processing of (N2, CH4, CO) ices (Bohn et al. 1994; Moore & Hudson 2003; Hodyss et al. 2011; Kim and Kaiser 2012). Recently Materese et al. (2014) used a variety of techniques to better characterize the refractory materials produced from the UV photo-irradiation of N2:CH4:CO ices. However, because Pluto’s atmosphere is optically thick to Lyman-? UV radiation it is important to re-examine the results using an alternate radiation source. Our latest work has consisted of the analysis of refractory materials produced from the electron bombardment of low-temperature N2-, CH4-, and CO-containing ices (100:1:1). The ice mixture was chosen to be analogous to the known surface ices on Pluto and the radiation source was chosen to mimic the secondary electrons produced by cosmic rays bombardment. The residues were studied using multiple chemical techniques including, infrared (IR) spectroscopy, X-ray absorption near-edge structure (XANES) spectroscopy, and gas chromatography coupled with mass spectrometry (GC-MS). The organic residues produced in these experiments can be seen as an analog for the refractory component of the surface of Pluto, and are compared with the residues previously obtained from UV photo-irradiation. UV and near-IR spectroscopy of the surfaces of Pluto and Charon during the encounter with NASA’s New Horizons spacecraft in 2015, will give the first close-up measurements of ices and their photoproducts. Laboratory measurements and experiments will provide a better context for the data returned by the spacecraft.

  5. Antagonistic intestinal microflora produces antimicrobial substance inhibitory to Pseudomonas species and other spoilage organisms.

    PubMed

    Hatew, Bayissa; Delessa, Tenagne; Zakin, Vered; Gollop, Natan

    2011-10-01

    Chicken intestine harbors a vast number of bacterial strains. In the present study, antimicrobial substance produced by lactic acid bacteria (LAB) isolated from the gastrointestinal tract of healthy chicken was detected, characterized, and purified. Based on 16S rRNA sequencing, the bacteria were identified as Lactobacillus plantarum vN. The antimicrobial substance produced by this bacterium was designated vN-1 and exhibited a broad-spectrum of activity against many important pathogenic and spoilage microorganisms, including Pseudomonas aeruginosa, Staphylococcus aureus, Micrococcus luteus, Salmonella Typhimurium, and Erwinia amylovova. vN-1 was determined to be thermostable, insensitive to pH values ranging from 2.0 to 8.0, resistant to various organic solvents and to enzymatic inactivation. The inhibition kinetics displayed a bactericidal mode of action. This study revealed an antimicrobial substance with low molecular mass of less than 1 kDa as determined by ultrafiltration and having features not previously reported for LAB isolated from chicken intestines. The detection of this antimicrobial substance addresses an important aspect of biotechnological control agents of spoilage caused by Pseudomonas spp. and promises the possibility for preservation of refrigerated poultry meat. Practical Application:? The newly characterized antimicrobial substance and designated as vN-1 may have the potential to be used in food preservation. PMID:21913924

  6. Inhibition of Pseudogymnoascus destructans growth from conidia and mycelial extension by bacterially produced volatile organic compounds.

    PubMed

    Cornelison, Christopher T; Gabriel, Kyle T; Barlament, Courtney; Crow, Sidney A

    2014-02-01

    The recently identified causative agent of white-nose syndrome (WNS), Pseudogymnoascus destructans, has been implicated in the mortality of an estimated 5.5 million North American bats since its initial documentation in 2006 (Frick et al. in Science 329:679-682, 2010). In an effort to identify potential biological and chemical control options for WNS, 6 previously described bacterially produced volatile organic compounds (VOCs) were screened for anti-P. destructans activity. The compounds include decanal; 2-ethyl-1-hexanol; nonanal; benzothiazole; benzaldehyde; andN,N-dimethyloctylamine. P. destructans conidia and mycelial plugs were exposed to the VOCs in a closed air space at 15 and 4 °C and then evaluated for growth inhibition. All VOCs inhibited growth from conidia as well as inhibiting radial mycelial extension, with the greatest effect at 4 °C. Studies of the ecology of fungistatic soils and the natural abundance of the fungistatic VOCs present in these environments suggest a synergistic activity of select VOCs may occur. The evaluation of formulations of two or three VOCs at equivalent concentrations was supportive of synergistic activity in several cases. The identification of bacterially produced VOCs with anti-P. destructans activity indicates disease-suppressive and fungistatic soils as a potentially significant reservoir of biological and chemical control options for WNS and provides wildlife management personnel with tools to combat this devastating disease. PMID:24190516

  7. Organic matrix in produced water from the Osage-Skiatook petroleum environmental research site, Osage county, Oklahoma.

    PubMed

    Sirivedhin, Tanita; Dallbauman, Liese

    2004-11-01

    Produced water (water co-produced with oil and gas) constitutes the single largest waste stream for oil and gas industry. Reclaiming this water for beneficial use is thought to be one of the most practical solutions that can solve both environmental and water shortage problems. The feasibility of this practice depends on the ability to remove its chemical content to the levels that meets the appropriate standards. Organic compounds are probably the most difficult fraction to handle. In this paper, the discrete organic compounds and non-volatile, macromolecular organic compounds (i.e., natural organic matter--NOM) of three produced water samples from the Osage-Skiatook Environmental Research site were characterized. Two of the three produced waters had very little contribution from NOM, while one of the samples had about 23% NOM contribution to its organic matrix pool. Fluorescent spectrophotometric scans provided little differentiation among the organic quality of the produced water, while pyrolysis-GC/MS showed that the NOM characteristics of the three produced waters were distinct. Specifically, the overall halogenated content and aromaticity of the NOM were found to be possible qualifiers that distinguish produced water from the coalbed methane well from produced water from the oil well. And the specific chemical fragments that are linked to polysaccharide sources were found to be potential identifiers that distinguish produced water from the newer oil well from produced water from the older oil well. These identifiers were, however, only suggested for this preliminary study. More samples must be included to build a substantial database on produced water NOM to confirm and identify more markers. PMID:15350408

  8. Real-Time Discrimination and Versatile Profiling of Spontaneous Reactive Oxygen Species in Living Organisms with a Single Fluorescent Probe.

    PubMed

    Zhang, Ruilong; Zhao, Jun; Han, Guangmei; Liu, Zhengjie; Liu, Cui; Zhang, Cheng; Liu, Bianhua; Jiang, Changlong; Liu, Renyong; Zhao, Tingting; Han, Ming-Yong; Zhang, Zhongping

    2016-03-23

    Fluorescent probes are powerful tools for the investigations of reactive oxygen species (ROS) in living organisms by visualization and imaging. However, the multiparallel assays of several ROS with multiple probes are often limited by the available number of spectrally nonoverlapping chromophores together with large invasive effects and discrepant biological locations. Meanwhile, the spontaneous ROS profilings in various living organs/tissues are also limited by the penetration capability of probes across different biological barriers and the stability in reactive in vivo environments. Here, we report a single fluorescent probe to achieve the effective discrimination and profiling of hydroxyl radicals (•OH) and hypochlorous acid (HClO) in living organisms. The probe is constructed by chemically grafting an additional five-membered heterocyclic ring and a lateral triethylene glycol chain to a fluorescein mother, which does not only turn off the fluorescence of fluorescein, but also create the dual reactive sites to ROS and the penetration capability in passing through various biological barriers. The reactions of probe with •OH and HClO simultaneously result in cyan and green emissions, respectively, providing the real-time discrimination and quantitative analysis of the two ROS in cellular mitochondria. Surprisingly, the accumulation of probes in the intestine and liver of a normal-state zebrafish and the transfer pathway from intestine-to-blood-to-organ/tissue-to-kidney-to-excretion clearly present the profiling of spontaneous •OH and HClO in these metabolic organs. In particular, the stress generation of •OH at the fresh wound of zebrafish is successfully visualized for the first time, in spite of its extremely short lifetime. PMID:26938117

  9. Use of Interim Scaffolding and Neotissue Development to Produce a Scaffold-Free Living Hyaline Cartilage Graft.

    PubMed

    Lau, Ting Ting; Leong, Wenyan; Peck, Yvonne; Su, Kai; Wang, Dong-An

    2015-01-01

    The fabrication of three-dimensional (3D) constructs relies heavily on the use of biomaterial-based scaffolds. These are required as mechanical supports as well as to translate two-dimensional cultures to 3D cultures for clinical applications. Regardless of the choice of scaffold, timely degradation of scaffolds is difficult to achieve and undegraded scaffold material can lead to interference in further tissue development or morphogenesis. In cartilage tissue engineering, hydrogel is the highly preferred scaffold material as it shares many similar characteristics with native cartilaginous matrix. Hence, we employed gelatin microspheres as porogens to create a microcavitary alginate hydrogel as an interim scaffold to facilitate initial chondrocyte 3D culture and to establish a final scaffold-free living hyaline cartilaginous graft (LhCG) for cartilage tissue engineering. PMID:26445836

  10. Building Change Capacity within Secondary Schools through Goal-Driven and Living Organizations.

    ERIC Educational Resources Information Center

    Hannay, Lynne M.; Ross, John A.; Erb, Cathy Smeltzer

    This paper draws on chaos theory to examine the potential of change within a living community. It focuses on secondary-school change in order to consider the divergent paths and the unexpected cultural adaptations that emerged when a Canadian school district required its secondary schools to revise their organizational models. Department heads…

  11. Shifting Models of Welfare: Issues in Relocation from an Institution and the Organization of Community Living

    ERIC Educational Resources Information Center

    Bigby, Christine

    2006-01-01

    The closure of institutions and relocation of people with intellectual disabilities to community living has been the focus of many nations' intellectual disability policies in the past three decades. The author studied the relocation of 58 people from a large institution to 11 small group homes in several Australian communities. Organizational…

  12. Absorption and Fluorescence Properties of Chromophoric Dissolved Organic Matter Produced by Algae.

    PubMed

    Peng, Tong; Lu, Xiao-lan; Su, Rong-guo; Zhang, Dong-mei

    2015-09-01

    Four kinds of diatom (Chaetoceros curvisetus, Phaeodactylum tricornutum, Nitzschia closterium f. minutissima and Navicula halophile) and two kinds of dinoflagellates (Prorocentrum donghaiense and Gymnodinium) were cultured under laboratory conditions. Variations of optical properties of chromophoric dissolved organic matter (CDOM) were studied with absorption and fluorescence excitation-emission matrix spectroscopy(EEM) during growth of marine microalgae in incubation experiment. Absorption spectrum revealed absorption coefficient a(355) (CDOM absorption coefficients at 355 nm) of 6 kinds of marine microalgae above increased by 64.8%, 242.3%, 535.1%, 903.2%, 836% and 196.4%, respectively. Simultaneously, the absorption spectral slope (Sg), determined between 270 and 350 nm, representing the size of molecular weight of CDOM and humic-like composition, decreased by 8.7%, 34.6%, 39.4%, 53.1%, 46.7%, and 35.7%, respectively. Applying parallel factor analysis (PARAFAC) together with EEM got four components of CDOM: C1(Ex/Em=350(260) nm/450 nm), C2 (Ex/Em=260(430) nm/525 nm), C3 (Ex/Em=325 nm/400 nm) and C4(Ex/Em=275 nm/325 nm), which were relative to three humic-like and one protein-like fluorescent components of Nitzschia closterium f. minutissima and Navicula halophile. In incubation experiment, fluorescence intensity of these four components during growth of Nitzschia closterium f. minutissima increased by, respectively, 8.68, 24.9, 7.19 and 39.8 times, and those of Navicula halophile increased by 2.64, 0.07, 4.39 and 12.4 times, respectively. Significant relationships were found between the fluorescence intensity of four components of CDOM, a(355) and Sg. All results demonstrated that both content and molecular weight of CDOM produced by diatom and dinoflagellate studied in incubation experiment increased, but these two parameters changed more obviously of the diatom than those of dinoflagellate; the proportion of humic-like components in the composition of CDOM also increased clearly with the growth of marine microalgae, but protein-like fluorescent component had only a slow growth. Furthermore, the absorption spectrum of CDOM produced by different species of algae changed obviously and the relative composition fluorescence intensity of CDOM produced by different microalgae were found to vary among different composition from EEM, which suggested CDOM produced by different microalgae make quite different contributions to CDOM in natural seawater. PMID:26669142

  13. [Living organ donation vs. cadaveric donation - study of liver transplanted children and their families].

    PubMed

    Schulz, K H; Hofmann, C; Sander, K; Edsen, S; Burdelski, M; Koch, U; Rogiers, X

    2001-12-01

    There is only scarce information on the quality of life of child recipients of liver transplants and their families. Particularly children with a living related graft and their families never have been compared to children who received a cadaveric graft and their families. We investigated the following issues in our study: How do parents and children from participating families rate their strain, their quality of life and their relationships within their family? Do families with a living - related donor differ from those with a cadaveric donor? What do living donors and their partners think about the donation retrospectively? The study was conducted with 106 participants from 50 families (42 mothers, 40 fathers, and 24 children older than 6 years). In 20 of these families, a living transplantation had been performed. Participants were interviewed and asked to fill out several questionnaires. School-aged children with a liver transplant show good social integration among their peers and in school. The child's disease, however, has a great impact on the family. Family members show a reduction in social contact, and an increase in marital crises, and problematic relations amongst siblings. Families in which a cadaveric graft was performed, are less satisfied with life, and show more symptoms of exhaustion. Every family studied possessed or acquired - a high degree of internal or external coping resources. Living - related donors tried hard to obtain an understanding of the medical context. The partner, rather than the donor himself, feels anxious before the donation. The limited time available for the decision to donate is not perceived by the donors to be critical. Ten percent of living donors feel "a little" that their health is affected. The decision to donate is supported "strongly" or "very strongly" by the partners in 80 % of the cases. A possible strain on the child through the expectation of gratitude by the donor is stated by 20 %. All of the donors agree that if they were to be asked today, they would donate again, only one of the partners raised objections. In summary, as a retrospective pilot study, this study primarily generates hypotheses rather than testing them and helps to develop research tools for the field. Results suggest that a psychological support be made available both prior to and following the operation, not only for the children but also for their families, with particular attention to the partners of the living donors and the siblings of the affected children. PMID:11774048

  14. Predictors of public attitude toward living organ donation in Kano, northern Nigeria.

    PubMed

    Iliyasu, Zubairu; Abubakar, Isa S; Lawan, Umar M; Abubakar, Mustapha; Adamu, Bappa

    2014-01-01

    Organ shortage is a major public health challenge for transplant programs globally. The sustenance of such programs as an effective therapy for end-stage organ failure (ESOF) requires an exploration of public awareness and willingness to donate organs. This is imperative, especially in developing countries where ESOF is highly prevalent. We studied the awareness and predictors of public attitude toward organ donation in Kano city in northern Nigeria. Using interviewer-administered questionnaires, we assessed the awareness and willingness to donate solid organs among 400 adults in the Kano metropolis. Three hundred and five of the 383 respondents (79.6%) reported that they had heard about organ donation. There was a significant variation of awareness by education and ethnicity (P <0.05). Most respondents, 303 (79.1%), were willing to donate an organ. Gender [adjusted odds ratio (AOR) = 2.13; 95% confidence interval (CI): 1.40-4.95], educational attainment (AOR = 2.55; 95% CI: 1.35-5.88), marital status (AOR = 4.5; 95% CI: 2.97-9.1), religion (AOR = 3.40; 95% CI: 1.43-8.10) and ethnicity (AOR = 2.36; 95% CI 1.04-5.35) were significant predictors of willingness to donate an organ. Preferred organ recipients were parents (48.9%), children (21.3%), spouses (14.6%) and other relatives (13.4%). Reasons for willingness to donate organs included religion (51.2%), moral obligation (21.4%) and compassion (11.9%), among others. However, there was widespread ignorance of religious precepts concerning organ donation. The high level of awareness and willingness to donate organs in this society could be further enhanced by intensive information, education and communication strategies providing clear messages on societal benefits, religious aspects and bioethical guidance regarding organ donation. PMID:24434412

  15. Short-lived organic trace gases in the UT/LS: Results from recent field campaigns. (Invited)

    NASA Astrophysics Data System (ADS)

    Atlas, E. L.; Pan, L.; Schauffler, S.; Bowman, K. P.; Blake, D. R.; Meinardi, S.; Stone, D.; Lueb, R.; Zhu, X.; Pope, L.

    2009-12-01

    Recent research campaigns in the tropics (TC-4 and AVE missions) and in the extra-tropics (START08) have included the measurement of trace gases from whole air sampling on the NASA WB-57 or NSF Gulfstream V aircraft. Measurements of a range of halocarbons, hydrocarbons, organic nitrates, and sulfur species were made during these missions to examine the role of short-lived organic gases in the UT/LS. The trace gas composition of the upper troposphere/lower stratosphere (UT/LS) region depends on emission sources, transport pathways, mixing rates and photochemical processing time. Because surface emissions include gases with a range of chemical lifetimes, and because different source emissions (e.g. marine boundary layer, anthropogenic emissions, biomass burning) can have different chemical signatures, the composition of the organic trace gases that are found in the UT/LS region have the potential to provide diagnostic information on air mass sources and transport time scales. Also, measurement of short-lived organic halogen gases in the UT/LS during these missions provides data to define the reactive halogen budget and the chemical boundary conditions for the stratospheric chemistry that affects ozone depletion rates. This presentation will highlight different aspects of these measurements that deal with transport pathways, transport rates, and halogen budgets.

  16. Influence of inorganic and organic selenium on number of living mycelial cells and their ultrastructure in culture of Hericium erinaceum (Bull.: Fr. Pers.).

    PubMed

    Slusarczyk, Joanna; Malinowska, Eliza; Krzyczkowski, W; Kuraś, M

    2013-03-01

    Mycelium of the white-rot fungus (Hericium erinaceum (Bull.: Fr. Pers.) produces polysaccharides showing anticancer and immunostimulating activity. In our previous works, we have shown that organic selenitetriglycerides (Selol) contribute to the increase of biosynthesis of exopolysaccharides (EPS) having antioxidative properties and containing large amounts of selenium. The present work is a study of influence of inorganic and organic form of selenium on viability of H. erinaceum mycelium and on ultrastructural changes taking place during its development in submerged culture. The mycelium was grown on media containing sodium selenite (Na2SeO3), a mixture of Na2SeO3 + Selol2% and on control medium (no selenium added). It was shown that mycelium cultured for 3 days in control conditions on standard media contained almost 100% of living cells, with over 80% after 24 days. Treatment with 100 ppm of Na2SeO3 lowered the number of viable cells to 11.8% and 9.1% after 3 and 24 days, respectively. The addition of 2% Selol caused the amounts of living cells to remain at ca 90%. Apparently, Selol helped the cells to cope with the toxic activity of inorganic selenium ions. The addition of sodium selenite induced degradative changes in cell organelles. Such changes were not observed in the case of Na2SeO3 + Selol mixture, in which case cells contained numerous ribosomes and small lipid bodies. PMID:23567834

  17. Reimbursing Live Organ Donors for Incurred Non-Medical Expenses: A Global Perspective on Policies and Programs

    PubMed Central

    Sickand, M.; Cuerden, M. S.; Klarenbach, S. W.; Ojo, A. O.; Parikh, C. R.; Boudville, N.; Garg, A. X.

    2015-01-01

    Methods to reimburse living organ donors for the non-medical expenses they incur have been implemented in some jurisdictions and are being considered in others. A global understanding of existing legislation and programs would help decision makers implement and optimize policies and programs. We searched for and collected data from countries that practice living organ donation. We examined legislation and programs that facilitate reimbursement, focusing on policy mechanisms, eligibility criteria, program duration and types of expenses reimbursed. Of 40 countries, reimbursement is expressly legal in 16, unclear in 18, unspecified in 6 and expressly prohibited in 1. Donor reimbursement programs exist in 21 countries; 6 have been enacted in the last 5 years. Lost income is reimbursed in 17 countries, while travel, accommodation, meal and childcare costs are reimbursed in 12 to 19 countries. Ten countries have comprehensive programs, where all major cost categories are reimbursed to some extent. Out-of-country donors are reimbursed in 10 jurisdictions. Reimbursement is conditional on donor income in 7 countries, and recipient income in 2 countries. Many nations have programs that help living donors with their financial costs. These programs differ in operation and scope. Donors in other regions of the world are without support. PMID:19788503

  18. Characterisation of algal organic matter produced by bloom-forming marine and freshwater algae.

    PubMed

    Villacorte, L O; Ekowati, Y; Neu, T R; Kleijn, J M; Winters, H; Amy, G; Schippers, J C; Kennedy, M D

    2015-04-15

    Algal blooms can seriously affect the operation of water treatment processes including low pressure (micro- and ultra-filtration) and high pressure (nanofiltration and reverse osmosis) membranes mainly due to accumulation of algal-derived organic matter (AOM). In this study, the different components of AOM extracted from three common species of bloom-forming algae (Alexandrium tamarense, Chaetoceros affinis and Microcystis sp.) were characterised employing various analytical techniques, such as liquid chromatography - organic carbon detection, fluorescence spectroscopy, fourier transform infrared spectroscopy, alcian blue staining and lectin staining coupled with laser scanning microscopy to indentify its composition and force measurement using atomic force microscopy to measure its stickiness. Batch culture monitoring of the three algal species illustrated varying characteristics in terms of growth pattern, cell concentration and AOM release. The AOM produced by the three algal species comprised mainly biopolymers (e.g., polysaccharides and proteins) but some refractory compounds (e.g., humic-like substances) and other low molecular weight acid and neutral compounds were also found. Biopolymers containing fucose and sulphated functional groups were found in all AOM samples while the presence of other functional groups varied between different species. A large majority (>80%) of the acidic polysaccharide components (in terms of transparent exopolymer particles) were found in the colloidal size range (<0.4 ?m). The relative stickiness of AOM substantially varied between algal species and that the cohesion between AOM-coated surfaces was much stronger than the adhesion of AOM on AOM-free surfaces. Overall, the composition as well as the physico-chemical characteristics (e.g., stickiness) of AOM will likely dictate the severity of fouling in membrane systems during algal blooms. PMID:25682049

  19. Estimation and characterization of unintentionally produced persistent organic pollutant emission from converter steelmaking processes.

    PubMed

    Li, Sumei; Zheng, Minghui; Liu, Wenbin; Liu, Guorui; Xiao, Ke; Li, Changliang

    2014-06-01

    Unintentionally produced persistent organic pollutants (UP-POPs) including polychlorinated dibenzo-p-dioxins, and dibenzofurans (PCDD/Fs), polychlorinated biphenyls (PCBs), and polychlorinated naphthalenes (PCNs) were characterized and quantified in stack gas and fly ash from the second ventilation systems in five typical converters in five different steelmaking plants. The 2378-substituted PCDD/Fs (2378-PCDD/Fs) and dioxin-like PCB (dl-PCBs) toxic equivalents (TEQs) were 1.84-10.3 pg WHO-TEQ Nm(-3) in the stack gas and 5.59-87.6 pg WHO-TEQ g(-1) in the fly ash, and the PCN TEQs were 0.06-0.56 pg TEQ Nm(-3) in the stack gas and 0.03-0.08 pg TEQ g(-1) in the fly ash. The concentrations of UP-POPs in the present study were generally lower than those in other metallurgical processes, such as electric arc furnaces, iron ore sintering, and secondary metallurgical processes. Adding scrap metal might increase UP-POP emissions, indicating that raw material composition was a key influence on emissions. HxCDF, HpCDF, OCDF, HpCDD, and OCDD were the dominant PCDD/Fs in the stack gas and fly ash. TeCB and PeCB were dominant in the stack gas, but HxCB provided more to the total PCB concentrations in the fly ash. The lower chlorinated PCNs were dominant in all of the samples. The 2378-PCDD/F, dl-PCB, and PCN emission factors in stack gases from the steelmaking converter processes (per ton of steel produced) were 1.88-2.89, 0.14-0.76, and 229-759 ?g t(-1), respectively. PMID:24682712

  20. 7 CFR 1220.114 - National nonprofit producer-governed organization.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AGRICULTURE SOYBEAN PROMOTION, RESEARCH, AND CONSUMER INFORMATION Soybean Promotion and Research Order... by a Board of directors of agricultural producers representing soybean producers on a national basis;...

  1. 7 CFR 1220.114 - National nonprofit producer-governed organization.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AGRICULTURE SOYBEAN PROMOTION, RESEARCH, AND CONSUMER INFORMATION Soybean Promotion and Research Order... by a Board of directors of agricultural producers representing soybean producers on a national basis;...

  2. 7 CFR 1220.114 - National nonprofit producer-governed organization.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AGRICULTURE SOYBEAN PROMOTION, RESEARCH, AND CONSUMER INFORMATION Soybean Promotion and Research Order... by a Board of directors of agricultural producers representing soybean producers on a national basis;...

  3. 7 CFR 1220.114 - National nonprofit producer-governed organization.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AGRICULTURE SOYBEAN PROMOTION, RESEARCH, AND CONSUMER INFORMATION Soybean Promotion and Research Order... by a Board of directors of agricultural producers representing soybean producers on a national basis;...

  4. 7 CFR 1220.114 - National nonprofit producer-governed organization.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AGRICULTURE SOYBEAN PROMOTION, RESEARCH, AND CONSUMER INFORMATION Soybean Promotion and Research Order... by a Board of directors of agricultural producers representing soybean producers on a national basis;...

  5. A Graphical Journey of Innovative Organic Architectures that Have Improved Our Lives

    ERIC Educational Resources Information Center

    McGrath, Nicholas A.; Brichacek, Matthew; Njardarson, Jon T.

    2010-01-01

    A new free graphical teaching tool that highlights the beautiful organic architectures of the top selling pharmaceuticals is detailed on two posters. In addition to the multitude of teaching and data-mining opportunities these posters offer, they were also created to emphasize the central role organic chemists play in the development of new…

  6. A Graphical Journey of Innovative Organic Architectures that Have Improved Our Lives

    ERIC Educational Resources Information Center

    McGrath, Nicholas A.; Brichacek, Matthew; Njardarson, Jon T.

    2010-01-01

    A new free graphical teaching tool that highlights the beautiful organic architectures of the top selling pharmaceuticals is detailed on two posters. In addition to the multitude of teaching and data-mining opportunities these posters offer, they were also created to emphasize the central role organic chemists play in the development of new…

  7. Imaging Complex Protein Metabolism in Live Organisms by Stimulated Raman Scattering Microscopy with Isotope Labeling

    PubMed Central

    2016-01-01

    Protein metabolism, consisting of both synthesis and degradation, is highly complex, playing an indispensable regulatory role throughout physiological and pathological processes. Over recent decades, extensive efforts, using approaches such as autoradiography, mass spectrometry, and fluorescence microscopy, have been devoted to the study of protein metabolism. However, noninvasive and global visualization of protein metabolism has proven to be highly challenging, especially in live systems. Recently, stimulated Raman scattering (SRS) microscopy coupled with metabolic labeling of deuterated amino acids (D-AAs) was demonstrated for use in imaging newly synthesized proteins in cultured cell lines. Herein, we significantly generalize this notion to develop a comprehensive labeling and imaging platform for live visualization of complex protein metabolism, including synthesis, degradation, and pulse–chase analysis of two temporally defined populations. First, the deuterium labeling efficiency was optimized, allowing time-lapse imaging of protein synthesis dynamics within individual live cells with high spatial–temporal resolution. Second, by tracking the methyl group (CH3) distribution attributed to pre-existing proteins, this platform also enables us to map protein degradation inside live cells. Third, using two subsets of structurally and spectroscopically distinct D-AAs, we achieved two-color pulse–chase imaging, as demonstrated by observing aggregate formation of mutant hungtingtin proteins. Finally, going beyond simple cell lines, we demonstrated the imaging ability of protein synthesis in brain tissues, zebrafish, and mice in vivo. Hence, the presented labeling and imaging platform would be a valuable tool to study complex protein metabolism with high sensitivity, resolution, and biocompatibility for a broad spectrum of systems ranging from cells to model animals and possibly to humans. PMID:25560305

  8. Novel Reporter for Faithful Monitoring of ERK2 Dynamics in Living Cells and Model Organisms

    PubMed Central

    Sipieter, François; Cappe, Benjamin; Gonzalez Pisfil, Mariano; Spriet, Corentin; Bodart, Jean-François; Cailliau-Maggio, Katia; Vandenabeele, Peter; Héliot, Laurent; Riquet, Franck B.

    2015-01-01

    Uncoupling of ERK1/2 phosphorylation from subcellular localization is essential towards the understanding of molecular mechanisms that control ERK1/2-mediated cell-fate decision. ERK1/2 non-catalytic functions and discoveries of new specific anchors responsible of the subcellular compartmentalization of ERK1/2 signaling pathway have been proposed as regulation mechanisms for which dynamic monitoring of ERK1/2 localization is necessary. However, studying the spatiotemporal features of ERK2, for instance, in different cellular processes in living cells and tissues requires a tool that can faithfully report on its subcellular distribution. We developed a novel molecular tool, ERK2-LOC, based on the T2A-mediated coexpression of strictly equimolar levels of eGFP-ERK2 and MEK1, to faithfully visualize ERK2 localization patterns. MEK1 and eGFP-ERK2 were expressed reliably and functionally both in vitro and in single living cells. We then assessed the subcellular distribution and mobility of ERK2-LOC using fluorescence microscopy in non-stimulated conditions and after activation/inhibition of the MAPK/ERK1/2 signaling pathway. Finally, we used our coexpression system in Xenopus laevis embryos during the early stages of development. This is the first report on MEK1/ERK2 T2A-mediated coexpression in living embryos, and we show that there is a strong correlation between the spatiotemporal subcellular distribution of ERK2-LOC and the phosphorylation patterns of ERK1/2. Our approach can be used to study the spatiotemporal localization of ERK2 and its dynamics in a variety of processes in living cells and embryonic tissues. PMID:26517832

  9. Studies on the biology of the crisamicin-producing organism Micromonospora purpureochromogenes subsp. celinoensis

    SciTech Connect

    Pope, J.A. Jr.

    1985-01-01

    A Micromonospora isolate, RV-101, obtained from the Red V Coconut Company in the Philippines, produces a new complex of antibiotics, the crisamicins. Using standard taxonomic methods for the genus Micromonospora, including micromorphology, growth characteristics on select media, whole cell analysis of chemical composition, and carbohydrate utilization patterns, the organism was classified as Micromonospora purpureochromogenes subsp. celinoensis. The chief character used in this classification was the production of a dark-brown diffusible pigment on media containing complex sources of nitrogen. The biosynthesis of crisamicin A was investigated by the technique of /sup 13/C acetate feeding and /sup 13/C NMR spectroscopy. Crisamicin A was found to be synthesized from acetate via the polyketide biosynthetic pathway. In addition, the assignment of one of two possible structures, differing in the position of phenolic hydroxyl groups, and in the point of linkage between the two monomers of the molecule, was made using the labeling data. The structure determined demonstrates that crisamicin A is unique among the benzoisochromanequinone antibiotics, in that it lacks an oxygen atom at position C-8.

  10. Carotenoid Content in Organically Produced Wheat: Relevance for Human Nutritional Health on Consumption

    PubMed Central

    Hussain, Abrar; Larsson, Hans; Kuktaite, Ramune; Olsson, Marie E.; Johansson, Eva

    2015-01-01

    In this study, 33 spring and winter wheat genotypes were analyzed for carotenoid content and composition. Investigated genotypes were divided into four genotype groups i.e., spelt, landraces, old cultivars and primitive wheat. The results showed a high level of variation among the genotypes in amount of carotenoids in the grain with high values (around 4 mg/Kg) especially in one of the genotypes—Öland 8. Lutein was the most common carotenoid in all the investigated genotypes, contributing 70%–90% of the carotenoids in the grain. Variation in carotenoid content and composition was found not only among genotypes, but also between genotype groups and wheat type, although there is a need to analyze more genotypes to confirm the differences found between groups and types. This study showed that 40% of the daily requirements of lutein can be achieved from the genotypes with the highest lutein content (Öland 8) produced using organic farming through the average human consumption of 200 grams of wheat per day. Furthermore, this study showed, by the use of principal component analyses, an opportunity to select genotypes combining high values of certain nutritional compounds. By a further breeding and commercial production of such genotypes, the nutritional value of wheat flour for human consumption can be improved. PMID:26540066

  11. Analysis of optical emissions produced by controlled electron impact on Si-organic molecules

    SciTech Connect

    Kurunczi, P.; Michel, J.P.; Abramzon, N.

    1995-12-31

    Si-organic compounds are used in a variety of plasma-assisted film deposition applications and in plasma polymerization processes. Tetraethoxysilane (TEOS), tetramethyl-silane (TMS), and hexamethyldisiloxane (HMDSO) are common constituents of technological processing plasmas. Mass spectrometry, laser-induced fluorescence techniques and optical emission spectroscopy are the most widely used diagnostics techniques for such plasmas. Optical methods require a detailed knowledge of the interaction of the parent molecule with electrons. While there is a limited data base of ionization and dissociative ionization cross sections for TMS, HMDSO, and TEOS, there have been no studies of the dissociative excitation of these molecules by controlled electron impact under single collision conditions with the exception of some earlier work for TEOS which was limited to the visible region of the optical spectrum. Energetic vacuum ultraviolet (VUV) photons, on the other hand, can cause serious damage of the processed surface. A knowledge of the electron-impact induced production of VUV photons can be an important factor in damage and quality control issues of the deposited materials. This paper reports the results of a detailed analysis of the optical emission spectra from the VUV to the near-infrared (50-800 nm) produced by electron impact on TEOS, HMDSO, and TMS under controlled single collision conditions.

  12. Producing surfactant-synthesized nanomaterials in situ on a building substrate, without volatile organic compounds.

    PubMed

    Illescas, Juan F; Mosquera, Maria J

    2012-08-01

    This article describes a sol-gel route for nanomaterials production, without volatile organic compounds (VOCs). These materials are simply obtained by mixing a silica oligomer with a non-ionic surfactant under ultrasonic agitation. The surfactant acts as sol-gel transition catalyst and also as an agent that directs the pore structure of the material, reducing capillary pressure during drying. Thus, a crack-free monolithic material is produced. We also synthesize a novel product with hydrophobic properties by adding OH terminal-polydimethylsiloxane to the starting sol. Importantly, since our synthesis does not require calcination or other additional procedures, the sol can be applied directly onto substrates, particularly the external surface of buildings. Thus, an application of these nanomaterials is to restore and to protect building substrates. Our in-depth investigation of the structure of these materials, using several techniques (physisorption, scanning electron microscopy, transmission electron microscopy, atomic force microscopy, nuclear resonance magnetic spectroscopy), reveals that they are composed of silica particles as a result of the role played by n-octylamine. In the hybrid materials, polydimethylsiloxane acts to form bridges linking the silica particles. Finally, we demonstrate the effectiveness of these products for consolidating one particular building stone and making it hydrophobic. PMID:22803788

  13. Synergistic activity of biocides and antibiotics on resistant bacteria from organically produced foods.

    PubMed

    Fernández Fuentes, Miguel Angel; Abriouel, Hikmate; Gadea, Rebeca; Pérez Pulido, Rubén; Gálvez, Antonio; Ortega, Elena

    2014-10-01

    Synergism between biocides and antibiotics was investigated in 20 biocide and antibiotic-resistant bacterial strains that were previously isolated from organically produced foods, according to their antimicrobial resistance profiles. Most of the antibiotic/biocide combinations yielded synergistic interactions, reducing the inhibitory concentrations of biocides and antibiotics by 4- to 16-fold. Among enterococci, synergism with biocides was detected for amoxicillin (AM), cefuroxime (CX), erythromycin (EM), ciprofloxacin (CP), and trimethoprim/sulphametoxazol (T/S). Among staphylococci, interactions were synergistic (AM) and either synergistic or indifferent (CX and EM, depending on biocide). Among the three methicillin-resistant Staphylococcus aureus clinical strains included in the study, the combinations of methicillin and triclosan or hexachlorophene acted synergistically in all strains, but interactions were either synergistic or indifferent for the other biocides, depending on the strain. All combinations tested were synergistic for Lactobacillus (AM, CX, EM, and CP) and Micrococcus (AM, EM). In Salmonella, interactions were indifferent (AM, CX, EM, and CP) or synergistic (T/S). Synergism with biocides was also detected in Klebsiella isolates (AM, CX, and T/S), Enterobacter sp. (AM, CX, EM, and T/S), Pantoea (AM, CX, EM, CP, and T/S), and Chryseobacterium sp. (EM). These results suggest that combinations of biocides and antibiotics may open new possibilities to combat antimicrobial resistance. PMID:24660956

  14. Biocide effects of volatile organic compounds produced by potential biocontrol rhizobacteria on Sclerotinia sclerotiorum.

    PubMed

    Giorgio, Annalisa; De Stradis, Angelo; Lo Cantore, Pietro; Iacobellis, Nicola S

    2015-01-01

    Six rhizobacteria isolated from common bean and able to protect bean plants from the common bacterial blight (CBB) causal agent, were in vitro evaluated for their potential antifungal effects toward different plant pathogenic fungi, mostly soil-borne. By dual culture assays, the above bacteria resulted producing diffusible and volatile metabolites which inhibited the growth of the majority of the pathogens under study. In particular, the latter substances highly affected the mycelium growth of Sclerotinia sclerotiorum strains, one of which was selected for further studies either on mycelium or sclerotia. Gas chromatographic analysis of the bacterial volatiles led to the identification of an array of volatile organic compounds (VOCs). Time course studies showed the modification of the VOCs profile along a period of 5 days. In order to evaluate the single detected VOC effects on fungal growth, some of the pure compounds were tested on S. sclerotiorum mycelium and their minimal inhibitory quantities were determined. Similarly, the minimal inhibitory quantities on sclerotia germination were also defined. Moreover, observations by light and transmission electron microscopes highlighted hyphae cytoplasm granulation and ultrastructural alterations at cell organelles, mostly membranes, mitochondria, and endoplasmic reticulum. The membranes appeared one of the primary targets of bacterial volatiles, as confirmed by hemolytic activity observed for the majority of pure VOCs. However, of interest is the alteration observed on mitochondria as well. PMID:26500617

  15. Collapsing Aged Culture of the Cyanobacterium Synechococcus elongatus Produces Compound(s) Toxic to Photosynthetic Organisms

    PubMed Central

    Cohen, Assaf; Sendersky, Eleonora; Carmeli, Shmuel; Schwarz, Rakefet

    2014-01-01

    Phytoplankton mortality allows effective nutrient cycling, and thus plays a pivotal role in driving biogeochemical cycles. A growing body of literature demonstrates the involvement of regulated death programs in the abrupt collapse of phytoplankton populations, and particularly implicates processes that exhibit characteristics of metazoan programmed cell death. Here, we report that the cell-free, extracellular fluid (conditioned medium) of a collapsing aged culture of the cyanobacterium Synechococcus elongatus is toxic to exponentially growing cells of this cyanobacterium, as well as to a large variety of photosynthetic organisms, but not to eubacteria. The toxic effect, which is light-dependent, involves oxidative stress, as suggested by damage alleviation by antioxidants, and the very high sensitivity of a catalase-mutant to the conditioned medium. At relatively high cell densities, S. elongatus cells survived the deleterious effect of conditioned medium in a process that required de novo protein synthesis. Application of conditioned medium from a collapsing culture caused severe pigment bleaching not only in S. elongatus cells, but also resulted in bleaching of pigments in a cell free extract. The latter observation indicates that the elicited damage is a direct effect that does not require an intact cell, and therefore, is mechanistically different from the metazoan-like programmed cell death described for phytoplankton. We suggest that S. elongatus in aged cultures are triggered to produce a toxic compound, and thus, this process may be envisaged as a novel regulated death program. PMID:24959874

  16. Biocide effects of volatile organic compounds produced by potential biocontrol rhizobacteria on Sclerotinia sclerotiorum

    PubMed Central

    Giorgio, Annalisa; De Stradis, Angelo; Lo Cantore, Pietro; Iacobellis, Nicola S.

    2015-01-01

    Six rhizobacteria isolated from common bean and able to protect bean plants from the common bacterial blight (CBB) causal agent, were in vitro evaluated for their potential antifungal effects toward different plant pathogenic fungi, mostly soil-borne. By dual culture assays, the above bacteria resulted producing diffusible and volatile metabolites which inhibited the growth of the majority of the pathogens under study. In particular, the latter substances highly affected the mycelium growth of Sclerotinia sclerotiorum strains, one of which was selected for further studies either on mycelium or sclerotia. Gas chromatographic analysis of the bacterial volatiles led to the identification of an array of volatile organic compounds (VOCs). Time course studies showed the modification of the VOCs profile along a period of 5 days. In order to evaluate the single detected VOC effects on fungal growth, some of the pure compounds were tested on S. sclerotiorum mycelium and their minimal inhibitory quantities were determined. Similarly, the minimal inhibitory quantities on sclerotia germination were also defined. Moreover, observations by light and transmission electron microscopes highlighted hyphae cytoplasm granulation and ultrastructural alterations at cell organelles, mostly membranes, mitochondria, and endoplasmic reticulum. The membranes appeared one of the primary targets of bacterial volatiles, as confirmed by hemolytic activity observed for the majority of pure VOCs. However, of interest is the alteration observed on mitochondria as well. PMID:26500617

  17. Carotenoid Content in Organically Produced Wheat: Relevance for Human Nutritional Health on Consumption.

    PubMed

    Hussain, Abrar; Larsson, Hans; Kuktaite, Ramune; Olsson, Marie E; Johansson, Eva

    2015-01-01

    In this study, 33 spring and winter wheat genotypes were analyzed for carotenoid content and composition. Investigated genotypes were divided into four genotype groups i.e., spelt, landraces, old cultivars and primitive wheat. The results showed a high level of variation among the genotypes in amount of carotenoids in the grain with high values (around 4 mg/Kg) especially in one of the genotypes-Öland 8. Lutein was the most common carotenoid in all the investigated genotypes, contributing 70%-90% of the carotenoids in the grain. Variation in carotenoid content and composition was found not only among genotypes, but also between genotype groups and wheat type, although there is a need to analyze more genotypes to confirm the differences found between groups and types. This study showed that 40% of the daily requirements of lutein can be achieved from the genotypes with the highest lutein content (Öland 8) produced using organic farming through the average human consumption of 200 grams of wheat per day. Furthermore, this study showed, by the use of principal component analyses, an opportunity to select genotypes combining high values of certain nutritional compounds. By a further breeding and commercial production of such genotypes, the nutritional value of wheat flour for human consumption can be improved. PMID:26540066

  18. Intestinal Carriage of Carbapenemase-Producing Organisms: Current Status of Surveillance Methods.

    PubMed

    Viau, Roberto; Frank, Karen M; Jacobs, Michael R; Wilson, Brigid; Kaye, Keith; Donskey, Curtis J; Perez, Federico; Endimiani, Andrea; Bonomo, Robert A

    2016-01-01

    Carbapenemases have become a significant mechanism for broad-spectrum ?-lactam resistance in Enterobacteriaceae and other Gram-negative bacteria such as Pseudomonas and Acinetobacter spp. Intestinal carriage of carbapenemase-producing organisms (CPOs) is an important source of transmission. Isolation of carriers is one strategy that can be used to limit the spread of these bacteria. In this review, we critically examine the clinical performance, advantages, and disadvantages of methods available for the detection of intestinal carriage of CPOs. Culture-based methods (Centers for Disease Control and Prevention [CDC] protocols, chromogenic media, specialized agars, and double-disk synergy tests) for detecting carriage of CPOs are convenient due to their ready availability and low cost, but their limited sensitivity and long turnaround time may not always be optimal for infection control practices. Contemporary nucleic acid amplification techniques (NAATs) such as real-time PCR, hybridization assays, loop-mediated isothermal amplification (LAMP), or a combined culture and NAAT approach may provide fast results and/or added sensitivity and specificity compared with culture-based methods. Infection control practitioners and clinical microbiologists should be aware of the strengths and limitations of available methods to determine the most suitable approach for their medical facility to fit their infection control needs. PMID:26511484

  19. Heterogeneous ice nucleation of viscous secondary organic aerosol produced from ozonolysis of α-pinene

    NASA Astrophysics Data System (ADS)

    Ignatius, K.; Kristensen, T. B.; Järvinen, E.; Nichman, L.; Fuchs, C.; Gordon, H.; Herenz, P.; Hoyle, C. R.; Duplissy, J.; Garimella, S.; Dias, A.; Frege, C.; Höppel, N.; Tröstl, J.; Wagner, R.; Yan, C.; Amorim, A.; Baltensperger, U.; Curtius, J.; Donahue, N. M.; Gallagher, M. W.; Kirkby, J.; Kulmala, M.; Möhler, O.; Saathoff, H.; Schnaiter, M.; Tomé, A.; Virtanen, A.; Worsnop, D.; Stratmann, F.

    2015-12-01

    There are strong indications that particles containing secondary organic aerosol (SOA) exhibit amorphous solid or semi-solid phase states in the atmosphere. This may facilitate deposition ice nucleation and thus influence cirrus cloud properties. However, experimental ice nucleation studies of biogenic SOA are scarce. Here, we investigated the ice nucleation ability of viscous SOA particles. The SOA particles were produced from the ozone initiated oxidation of α-pinene in an aerosol chamber at temperatures in the range from -38 to -10 °C at 5-15 % relative humidity with respect to water to ensure their formation in a highly viscous phase state, i.e. semi-solid or glassy. The ice nucleation ability of SOA particles with different sizes was investigated with a new continuous flow diffusion chamber. For the first time, we observed heterogeneous ice nucleation of viscous α-pinene SOA in the deposition mode for ice saturation ratios between 1.3 and 1.4 significantly below the homogeneous freezing limit. The maximum frozen fractions found at temperatures between -36.5 and -38.3 °C ranged from 6 to 20 % and did not depend on the particle surface area. Global modelling of monoterpene SOA particles suggests that viscous biogenic SOA particles are indeed present in regions where cirrus cloud formation takes place. Hence, they could make up an important contribution to the global ice nuclei (IN) budget.

  20. The Potential of Various Living Tissues for Monitoring Clenbuterol Abuse in Food-Producing Chinese Simmental Beef Cattle.

    PubMed

    Li, Lijun; Tang, Chaohua; Zhang, Junmin; Zhao, Qingyu; Zhang, Kai

    2016-01-01

    We aimed to evaluate whether living tissues such as urine, plasma and hair were suitable for monitoring clenbuterol (CL) abuse after its subchronic administration of a growth-promoting dose to the Chinese Simmental beef cattle. Eight male, white and red pied Chinese Simmental beef cattle were involved in the experiment, and the CL dose was 16 µg/kg BW/day. Liquid chromatography tandem mass spectrometry (LC-MS-MS) was used to determine CL residues in different tissues, and the addition of D9-clenbuterol internal standard was applied to increase determination accuracy. The recovery of plasma, urine, hair and in vivo tissues was 88.5-114.2, 83.9-114.3, 88.6-116.9 and 85.3-121.7%, respectively. The results showed that CL residue concentrations in the plasma, on Days 14 after withdrawal and later, were lower than the limit of detection (LOD) (0.06 ng/mL) and CL residue in urine was lower than LOD (0.16 ng/mL) 42 days after treatment. CL significantly accumulated in the white and red hair and maintained more than 7.19 ± 2.19 pg/mg within the early withdrawal period of 70 days. A large number of CL were determined in all tested biological tissues, in which residues were higher than the maximum residue limits (MRLs) after dietary administration of CL for 21 days and pre-slaughter withdrawal period of ?6 h. A particular concern is the slow depletion of residues of CL in some tissues like gluteus and liver still exceeding theirs MRLs, respectively, on Days 14 or 28 days after withdrawal. Our study indicated that plasma and urine could be available for monitoring CL abuse only within a short period of time. However, hair (including light-pigmented) as a target matrix can be selected to perform the long-period monitor of CL. PMID:26487642

  1. Micro-Radiography of Living Biological Organisms with MEDIPIX2 Detector and Application of Various Contrast Agents

    NASA Astrophysics Data System (ADS)

    Dammer, Jiri; Sopko, Vit; Jakubek, Jan; Weyda, Frantisek; Benes, Jiri; Zahorovsky, Julian

    2012-08-01

    We describe a newly developed radiographic system equipped with Medipix2 semiconductor pixel detector and a micro-focus FeinFocus X-ray tube tabletop. The detector is used as an imager that counts individual photons of ionizing radiation, emitted by the X-ray tube. The digital pixel detectors of the Medipix family represent a highly efficient type of imaging devices with high spatial resolution better than 1?m, and unlimited dynamic range allowing single particle of radiation and to determine their energies. The setup is particularly suitable for radiographic imaging of small biological samples, including in vivo observations with various contrast agents (iodine and lanthanum nitrate). Along with the description of the apparatus we provide examples of application of iodine and lanthanum nitrate contrast agents as tracers in various insects as model organisms. The iodine contrast agent increases the absorption of X-rays and this leads to better resolution of internal structures of biological organisms, and especially the various cavities, pores, etc. Micro-radiographic imaging helps to detect organisms living in a not visible environment, visualize internal biological processes and also to resolve the details of their body (morphology). Tiny live insects are an ideal object for our studies.

  2. High average daily intake of PCDD/Fs and serum levels in residents living near a deserted factory producing pentachlorophenol (PCP) in Taiwan: influence of contaminated fish consumption.

    PubMed

    Lee, C C; Lin, W T; Liao, P C; Su, H J; Chen, H L

    2006-05-01

    An abandoned pentachlorophenol plant and nearby area in southern Taiwan was heavily contaminated by dioxins, impurities formed in the PCP production process. The investigation showed that the average serum PCDD/Fs of residents living nearby area (62.5 pg WHO-TEQ/g lipid) was higher than those living in the non-polluted area (22.5 and 18.2 pg WHO-TEQ/g lipid) (P<0.05). In biota samples, average PCDD/F of milkfish in sea reservoir (28.3 pg WHO-TEQ/g) was higher than those in the nearby fish farm (0.15 pg WHO-TEQ/g), and Tilapia and shrimp showed the similar trend. The average daily PCDD/Fs intake of 38% participants was higher than 4 pg WHO-TEQ/kg/day suggested by the world health organization. Serum PCDD/F was positively associated with average daily intake (ADI) after adjustment for age, sex, BMI, and smoking status. In addition, a prospective cohort study is suggested to determine the long-term health effects on the people living near factory. PMID:16213641

  3. Effect of Organic Diet Intervention on Pesticide Exposures in Young Children Living in Low-Income Urban and Agricultural Communities

    PubMed Central

    Quirós-Alcalá, Lesliam; Castorina, Rosemary; Schall, Raul Aguilar; Camacho, Jose; Holland, Nina T.; Barr, Dana Boyd; Eskenazi, Brenda

    2015-01-01

    Background Recent organic diet intervention studies suggest that diet is a significant source of pesticide exposure in young children. These studies have focused on children living in suburban communities. Objectives We aimed to determine whether consuming an organic diet reduced urinary pesticide metabolite concentrations in 40 Mexican-American children, 3–6 years of age, living in California urban and agricultural communities. Methods In 2006, we collected urine samples over 16 consecutive days from children who consumed conventionally grown food for 4 days, organic food for 7 days, and then conventionally grown food for 5 days. We measured 23 metabolites, reflecting potential exposure to organophosphorous (OP), pyrethroid, and other pesticides used in homes and agriculture. We used linear mixed-effects models to evaluate the effects of diet on urinary metabolite concentrations. Results For six metabolites with detection frequencies > 50%, adjusted geometric mean concentrations during the organic phase were generally lower for all children, and were significant for total dialkylphosphates (DAPs) and dimethyl DAPs (DMs; metabolites of OP insecticides) and 2,4-D (2,4-dichlorophenoxyacetic acid, a herbicide), with reductions of 40%, 49%, and 25%, respectively (p < 0.01). Chemical-specific metabolite concentrations for several OP pesticides, pyrethroids, and herbicides were either infrequently detected and/or not significantly affected by diet. Concentrations for most of the frequently detected metabolites were generally higher in Salinas compared with Oakland children, with DMs and metolachlor at or near significance (p = 0.06 and 0.03, respectively). Conclusion An organic diet was significantly associated with reduced urinary concentrations of nonspecific dimethyl OP insecticide metabolites and the herbicide 2,4-D in children. Additional research is needed to clarify the relative importance of dietary and non-dietary sources of pesticide exposures to young children. Citation Bradman A, Quirós-Alcalá L, Castorina R, Aguilar Schall R, Camacho J, Holland NT, Barr DB, Eskenazi B. 2015. Effect of organic diet intervention on pesticide exposures in young children living in low-income urban and agricultural communities. Environ Health Perspect 123:1086–1093; http://dx.doi.org/10.1289/ehp.1408660 PMID:25861095

  4. [The hygienic requirements for the organization of prehouse areas to create good living conditions for the population].

    PubMed

    Priadko, A L; Bobkova, T E; Fokin, S G

    2009-01-01

    The paper considers the organization of prehouse areas, their improvement, and the adequate space of these prehouse territories to create good living conditions for the population. It has been found that the assessment of the existing town-planning situation in Moscow and the evaluation of the adopted functional zoning in the general town planning scheme for the city and administrative districts, and decision-making on the population's complaints require the estimation of the balance of a residential territory to develop normative requirements for this problem when considering the preconstruction proposals on location of variously purposeful projects in more detail, by analyzing the town-planning situation. PMID:20143487

  5. Microbially Produced Organic Matter and Its Role in Facilitating Pu Transport in the Deep Vadose Zone

    NASA Astrophysics Data System (ADS)

    Fisher, J. C.; Tinnacher, R. M.; Zavarin, M.; Kersting, A. B.; Czerwinski, K.; Moser, D. P.

    2010-12-01

    Microorganisms have the potential to affect the fate and mobility of actinides in the deep vadose zone (DVZ) by metabolism (direct oxidation/reduction and changes to ecosystem redox potential), production of colloids and ligands, or by sorption (biofilms). The role of microbial communities in colloid-facilitated Pu transport is currently under investigation at the Nevada Test Site (NTS). Our experimental objective is to obtain both qualitative and quantitative data on the in situ role of biological organic material (DOM, POC, and EPS) on the (de)sorption of Pu at environmentally relevant concentrations. Groundwater samples were collected through vertical ventilation holes from a flooded post-test tunnel at the (NTS), where SSU rRNA gene libraries revealed a range of potential microbial physiotypes. Microbial enrichments were set up with the aim of isolating numerically significant representatives of major relevant physiotypes (e.g. aerobic heterotrophs, Mn/Fe reducers, EPS producers). NTS isolates, a well-characterized Shewanella sp.(str. CN-32), and an EPS-mutant of this strain were screened for their reactivity with Pu(IV). Organisms with both high and low (relative) Kd’s were used in sorption and cell lysis experiments. Viability experiments were conducted for all isolates in NaCl or NaCl/NaHCO3 solutions (I=0.01) for pH = 3, 5, 7, and 9. Products from cell lysis were filtered (0.22 um) or dialyzed (MW cutoff = 20,000 kD). These fractions were normalized by TOC and equilibrated with Pu to determine if Pu sorbs more strongly to either viable cells, EPS, cell membranes, or cell exudates. In our experiments, Pu(IV) sorbed most strongly to cells or cell fractions with EPS (expolysaccharide, the major biofilm component). However, cell fractions and exudates, which may become mobile when released from lysed or senescing cells, also strongly sorbed to Pu(IV). Therefore, changes in groundwater chemistry (e.g., pH or ionic strength) may have both direct chemical effects and indirect effects on Pu sorption due to changes in the stability of the microbial cells or biofilms.

  6. Design a 10 kJ IS Mather Type Plasma Focus for Solid Target Activation to Produce Short-Lived Radioisotopes 12C(d,n)13N

    NASA Astrophysics Data System (ADS)

    Sadat Kiai, S. M.; Adlparvar, S.; Sheibani, S.; Elahi, M.; Safarien, A.; Farhangi, S.; Zirak, A. R.; Alhooie, S.; Mortazavi, B. N.; Khalaj, M. M.; Khanchi, A. R.; Dabirzadeh, A. A.; Kashani, A.; Zahedi, F.

    2010-10-01

    A 10 kJ (15 kV, 88 ?F) IS (Iranian Sun) Mather type plasma focus device has been studied to determine the activity of a compound exogenous carbon solid target through 12C(d,n)13N nuclear reaction. The produced 13N is a short-lived radioisotope with a half-life of 9.97 min and threshold energy of 0.28 MeV. The results indicate that energetic deuterons impinging on the solid target can produce yield of = 6.7 × 10-5 with an activity of A = 6.8 × 104 Bq for one plasma focus shut and A ? = 4 × 105 Bq for 6 shut per mint when the projectile maximum deuterons energy is E max = 3 MeV.

  7. Development of a simplified, mass producible hybridized ambient, low frequency, low intensity vibration energy scavenger (half-lives)

    NASA Astrophysics Data System (ADS)

    Khbeis, Michael Tawfik

    Scavenging energy from environmental sources is an active area of research to enable remote sensing and microsystems applications. Furthermore, as energy demands soar, there is a significant need to explore new sources and curb waste. Vibration energy scavenging is one environmental source for remote applications and a candidate for recouping energy wasted by mechanical sources that can be harnessed to monitor and optimize operation of critical infrastructure (e.g. Smart Grid). Current vibration scavengers are limited by volume and ancillary requirements for operation such as control circuitry overhead and battery sources. This dissertation, for the first time, reports a mass producible hybrid energy scavenger system that employs both piezoelectric and electrostatic transduction on a common MEMS device. The piezoelectric component provides an inherent feedback signal and pre-charge source that enables electrostatic scavenging operation while the electrostatic device provides the proof mass that enables low frequency operation. The piezoelectric beam forms the spring of the resonant mass-spring transducer for converting vibration excitation into an AC electrical output. A serially poled, composite shim, piezoelectric bimorph produces the highest output rectified voltage of over 3.3V and power output of 145muW using ¼ g vibration acceleration at 120Hz. Considering solely the volume of the piezoelectric beam and tungsten proof mass, the volume is 0.054cm3, resulting in a power density of 2.68mW/cm3. Incorporation of a simple parallel plate structure that provides the proof mass for low frequency resonant operation in addition to cogeneration via electrostatic energy scavenging provides a 19.82 to 35.29 percent increase in voltage beyond the piezoelectric generated DC rails. This corresponds to approximately 2.1nW additional power from the electrostatic scavenger component and demonstrates the first instance of hybrid energy scavenging using both piezoelectric and synchronous electrostatic transduction. Furthermore, it provides a complete system architecture and development platform for additional enhancements that will enable in excess of 100muW additional power from the electrostatic scavenger.

  8. Certified Organic Agriculture in Mexico: Market Connections and Certification Practices in Large and Small Producers

    ERIC Educational Resources Information Center

    Tovar, Laura Gomez; Martin, Lauren; Cruz, Manuel Angel Gomez; Mutersbaugh, Tad

    2005-01-01

    Certification within organic agriculture exhibits flexibility with respect to practices used to demonstrate that a product meets published quality standards. This case study of Mexican certified-organic agriculture finds two forms. Indigenous smallholders of southern Mexico undertake a low-input, process-oriented organic farming in which…

  9. Certified Organic Agriculture in Mexico: Market Connections and Certification Practices in Large and Small Producers

    ERIC Educational Resources Information Center

    Tovar, Laura Gomez; Martin, Lauren; Cruz, Manuel Angel Gomez; Mutersbaugh, Tad

    2005-01-01

    Certification within organic agriculture exhibits flexibility with respect to practices used to demonstrate that a product meets published quality standards. This case study of Mexican certified-organic agriculture finds two forms. Indigenous smallholders of southern Mexico undertake a low-input, process-oriented organic farming in which…

  10. Organic Compounds Produced by Photolysis of Realistic Interstellar and Cometary Ice Analogs Containing Methanol

    NASA Astrophysics Data System (ADS)

    Bernstein, Max P.; Sandford, Scott A.; Allamandola, Louis J.; Chang, Sherwood; Scharberg, Maureen A.

    1995-11-01

    The infrared (IR) spectra of ultraviolet (UV) and thermally processed, methanol-containing interstellar/ cometary ice analogs at temperatures from 12 to 300 K are presented. Infrared spectroscopy, 1H and 13C nuclear magnetic resonance (NMR) spectroscopy, and gas chromatography-mass spectrometry indicate that CO (carbon monoxide), CO2 (carbon dioxide), CH4 (methane), HCO (the formyl radical), H2CO (formaldehyde), CH3CH2OH (ethanol), HC(=O)NH2 (formamide), CH3C(=O)NH2 (acetamide), and R-C=-N (nitriles) are formed. In addition, the organic materials remaining after photolyzed ice analogs have been warmed to room temperature contain (in rough order of decreasing abundance), (1) hexamethylenetetramine (HMT, C6H12N4), (2) ethers, alcohols, and compounds related to polyoxymethylene {POM, ( CH2O )n}, and (3) ketones {R-C(=O)-R'} and amides {H2NC(=O)-R}. Most of the carbon in these residues is thought to come from the methanol in the original ice. Deuterium and 13C isotopic labeling demonstrates that methanol is definitely the source of carbon in HMT. High concentrations of HMT in interstellar and cometary ices could have important astrophysical consequences. The ultraviolet photolysis of HMT frozen in H2O ice readily produces the "XCN" band observed in the spectra of protostellar objects and laboratory ices, as well as other nitriles. Thus, HMT may be a precursor of XCN and a source of CN in comets and the interstellar medium. Also, HMT is known to hydrolyze under acidic conditions to yield ammonia, formaldehyde, and amino acids. Thus, HMT may be a significant source of prebiogenic compounds on asteroidal parent bodies. A potential mechanism for the radiative formation of HMT in cosmic ices is outlined.

  11. Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil

    PubMed Central

    Cordovez, Viviane; Carrion, Victor J.; Etalo, Desalegn W.; Mumm, Roland; Zhu, Hua; van Wezel, Gilles P.; Raaijmakers, Jos M.

    2015-01-01

    In disease-suppressive soils, plants are protected from infections by specific root pathogens due to the antagonistic activities of soil and rhizosphere microorganisms. For most disease-suppressive soils, however, the microorganisms and mechanisms involved in pathogen control are largely unknown. Our recent studies identified Actinobacteria as the most dynamic phylum in a soil suppressive to the fungal root pathogen Rhizoctonia solani. Here we isolated and characterized 300 isolates of rhizospheric Actinobacteria from the Rhizoctonia-suppressive soil. Streptomyces species were the most abundant, representing approximately 70% of the isolates. Streptomyces are renowned for the production of an exceptionally large number of secondary metabolites, including volatile organic compounds (VOCs). VOC profiling of 12 representative Streptomyces isolates by SPME-GC-MS allowed a more refined phylogenetic delineation of the Streptomyces isolates than the sequencing of 16S rRNA and the house-keeping genes atpD and recA only. VOCs of several Streptomyces isolates inhibited hyphal growth of R. solani and significantly enhanced plant shoot and root biomass. Coupling of Streptomyces VOC profiles with their effects on fungal growth, pointed to VOCs potentially involved in antifungal activity. Subsequent assays with five synthetic analogs of the identified VOCs showed that methyl 2-methylpentanoate, 1,3,5-trichloro-2-methoxy benzene and the VOCs mixture have antifungal activity. In conclusion, our results point to a potential role of VOC-producing Streptomyces in disease suppressive soils and show that VOC profiling of rhizospheric Streptomyces can be used as a complementary identification tool to construct strain-specific metabolic signatures. PMID:26500626

  12. Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil.

    PubMed

    Cordovez, Viviane; Carrion, Victor J; Etalo, Desalegn W; Mumm, Roland; Zhu, Hua; van Wezel, Gilles P; Raaijmakers, Jos M

    2015-01-01

    In disease-suppressive soils, plants are protected from infections by specific root pathogens due to the antagonistic activities of soil and rhizosphere microorganisms. For most disease-suppressive soils, however, the microorganisms and mechanisms involved in pathogen control are largely unknown. Our recent studies identified Actinobacteria as the most dynamic phylum in a soil suppressive to the fungal root pathogen Rhizoctonia solani. Here we isolated and characterized 300 isolates of rhizospheric Actinobacteria from the Rhizoctonia-suppressive soil. Streptomyces species were the most abundant, representing approximately 70% of the isolates. Streptomyces are renowned for the production of an exceptionally large number of secondary metabolites, including volatile organic compounds (VOCs). VOC profiling of 12 representative Streptomyces isolates by SPME-GC-MS allowed a more refined phylogenetic delineation of the Streptomyces isolates than the sequencing of 16S rRNA and the house-keeping genes atpD and recA only. VOCs of several Streptomyces isolates inhibited hyphal growth of R. solani and significantly enhanced plant shoot and root biomass. Coupling of Streptomyces VOC profiles with their effects on fungal growth, pointed to VOCs potentially involved in antifungal activity. Subsequent assays with five synthetic analogs of the identified VOCs showed that methyl 2-methylpentanoate, 1,3,5-trichloro-2-methoxy benzene and the VOCs mixture have antifungal activity. In conclusion, our results point to a potential role of VOC-producing Streptomyces in disease suppressive soils and show that VOC profiling of rhizospheric Streptomyces can be used as a complementary identification tool to construct strain-specific metabolic signatures. PMID:26500626

  13. Organic Solvent-Free Fluorescence Confocal Imaging of Living Cells Using Pure Nanocrystal Forms of Fluorescent Dyes

    NASA Astrophysics Data System (ADS)

    Baba, Koichi; Kasai, Hitoshi; Masuhara, Akito; Oikawa, Hidetoshi; Nakanishi, Hachiro

    2009-11-01

    In this paper we describe an organic solvent-free method for the in vitro fluorescence confocal imaging of living cells using nanocrystals of the hydrophobic fluorescent dyes 3,3'-dioctadecyloxacarbocyanine perchlorate (DiO) and perylene, which we obtained separately using the reprecipitation method. Confocal microscopy imaging revealed that cancer cells took up the dye with high avidity. Under similar treatment conditions, the dyes in their nanocrystal forms or as dimethylsulfoxide solutions provided comparable in vitro fluorescence imaging of cells through confocal microscopy. This nanocrystal formulation approach to in vitro bioimaging in cultures eliminates the need for external solubilizing agents (i.e., organic solvent, surfactant), which usually exhibit cytotoxicity. Our developed technique also allowed the double-staining imaging of cancer cells using DiO and perylene nanocrystals.

  14. A comparison of the nutritional value and food safety of organically and conventionally produced wheat flours.

    PubMed

    Vr?ek, Ivana Vinkovi?; ?epo, Dubravka Vitali; Raši?, Dubravka; Peraica, Maja; Žuntar, Irena; Boji?, Mirza; Mendaš, Gordana; Medi?-Šari?, Marica

    2014-01-15

    Growing interest in organic agriculture has prompted this study aiming to evaluate nutritional content of wheat flours originating from organic and conventional production systems. Obtained results showed that organic samples had significantly lower protein content and lower levels of Ca, Mn and Fe compared to conventional samples. Protein digestibility and levels of K, Zn and Mo were significantly higher in organic than in conventional wheat flours. Regarding undesirable metals, significantly higher levels of As and Cd were found in conventional compared to organic wheat flours. Although the mean concentrations of zearalenone and ochratoxin A were higher in conventional than in organic flours, this difference was not significant. This study revealed that organic agriculture has the potential to yield products with some relevant improvements in terms of high quality proteins and microelements contents, while the reduction in contamination with toxic elements and mycotoxins may be accomplished. PMID:24054276

  15. Concentration- and chromosome-organization-dependent regulator unbinding from DNA for transcription regulation in living cells

    PubMed Central

    Chen, Tai-Yen; Santiago, Ace George; Jung, Won; Krzemi?ski, ?ukasz; Yang, Feng; Martell, Danya J.; Helmann, John D.; Chen, Peng

    2015-01-01

    Binding and unbinding of transcription regulators at operator sites constitute a primary mechanism for gene regulation. While many cellular factors are known to regulate their binding, little is known on how cells can modulate their unbinding for regulation. Using nanometer-precision single-molecule tracking, we study the unbinding kinetics from DNA of two metal-sensing transcription regulators in living Escherichia coli cells. We find that they show unusual concentration-dependent unbinding kinetics from chromosomal recognition sites in both their apo and holo forms. Unexpectedly, their unbinding kinetics further varies with the extent of chromosome condensation, and more surprisingly, varies in opposite ways for their apo-repressor versus holo-activator forms. These findings suggest likely broadly relevant mechanisms for facile switching between transcription activation and deactivation in vivo and in coordinating transcription regulation of resistance genes with the cell cycle. PMID:26145755

  16. Can Organized Youth Activities Protect against Internalizing Problems among Adolescents Living in Violent Homes?

    ERIC Educational Resources Information Center

    Gardner, Margo; Browning, Christopher; Brooks-Gunn, Jeanne

    2012-01-01

    Using longitudinal data from a subsample of Hispanic, African American, and White youth enrolled in the Project on Human Development in Chicago Neighborhoods (N = 1,419), we examined the effects of both parental involvement in domestic violence and youth participation in organized out-of-school-time activities on internalizing symptoms during…

  17. Narrating Lives, Narrating Faith: "Organic Hybridity" for Contemporary Christian Religious Education

    ERIC Educational Resources Information Center

    Tran, Mai-Anh Le

    2010-01-01

    This article proposes that Christian Religious Education (CRE) today requires the practice of "organic hybridity" in fluid and shifting "diasporic spaces," the prerequisite for which is the recognition that "hybrid subjectivities" is characteristic of our current postmodern, postcolonial, transnational, globalized world. Toward this aim, CRE must…

  18. Can Organized Youth Activities Protect against Internalizing Problems among Adolescents Living in Violent Homes?

    ERIC Educational Resources Information Center

    Gardner, Margo; Browning, Christopher; Brooks-Gunn, Jeanne

    2012-01-01

    Using longitudinal data from a subsample of Hispanic, African American, and White youth enrolled in the Project on Human Development in Chicago Neighborhoods (N = 1,419), we examined the effects of both parental involvement in domestic violence and youth participation in organized out-of-school-time activities on internalizing symptoms during…

  19. Allometry of visceral organs in living amniotes and its implications for sauropod dinosaurs

    PubMed Central

    Franz, Ragna; Hummel, Jürgen; Kienzle, Ellen; Kölle, Petra; Gunga, Hanns-Christian; Clauss, Marcus

    2009-01-01

    Allometric equations are often used to extrapolate traits in animals for which only body mass estimates are known, such as dinosaurs. One important decision can be whether these equations should be based on mammal, bird or reptile data. To address whether this choice will have a relevant influence on reconstructions, we compared allometric equations for birds and mammals from the literature to those for reptiles derived from both published and hitherto unpublished data. Organs studied included the heart, kidneys, liver and gut, as well as gut contents. While the available data indicate that gut content mass does not differ between the clades, the organ masses for reptiles are generally lower than those for mammals and birds. In particular, gut tissue mass is significantly lower in reptiles. When applying the results in the reconstruction of a sauropod dinosaur, the estimated volume of the coelomic cavity greatly exceeds the estimated volume of the combined organ masses, irrespective of the allometric equation used. Therefore, substantial deviation of sauropod organ allometry from that of the extant vertebrates can be allowed conceptually. Extrapolations of retention times from estimated gut contents mass and food intake do not suggest digestive constraints on sauropod dinosaur body size. PMID:19324837

  20. Compact ultrafast semiconductor disk laser for nonlinear imaging in living organisms

    NASA Astrophysics Data System (ADS)

    Aviles-Espinosa, Rodrigo; Filippidis, G.; Hamilton, Craig; Malcolm, Graeme; Weingarten, Kurt J.; Südmeyer, Thomas; Barbarin, Yohan; Keller, Ursula; Artigas, David; Loza-Alvarez, Pablo

    2011-03-01

    Ultrashort pulsed laser systems (such as Ti:sapphire) have been used in nonlinear microscopy during the last years. However, its implementation is not straight forward as they are maintenance-intensive, bulky and expensive. These limitations have prevented their wide-spread use for nonlinear imaging, especially in "real-life" biomedical applications. In this work we present the suitability of a compact ultrafast semiconductor disk laser source, with a footprint of 140x240x70 mm, to be used for nonlinear microscopy. The modelocking mechanism of the laser is based on a quantumdot semiconductor saturable absorber mirror (SESAM). The laser delivers an average output power of 287 mW with 1.5 ps pulses at 500 MHz, corresponding to a peak power of 0.4 kW. Its center wavelength is 965 nm which is ideally suited for two-photon excitation of the widely used Green Fluorescent Protein (GFP) marker as it virtually matches its twophoton action cross section. We reveal that it is possible to obtain two photon excited fluorescence images of GFP labeled neurons and secondharmonic generation images of pharynx and body wall muscles in living C. elegans nematodes. Our results demonstrate that this compact laser is well suited for long-term time-lapse imaging of living samples as very low powers provide a bright signal. Importantly this non expensive, turn-key, compact laser system could be used as a platform to develop portable nonlinear bio-imaging devices, facilitating its wide-spread adoption in "real-life" applications.

  1. Live related donors in India: Their quality of life using world health organization quality of life brief questionnaire

    PubMed Central

    Vemuru Reddy, Sunil K.; Guleria, Sandeep; Okechukwu, Okidi; Sagar, Rajesh; Bhowmik, Dipankar; Mahajan, Sandeep

    2011-01-01

    Context: Organ selling is now legally banned in India. Numerous studies have documented that organ vendors have a poor quality of life (QOL) following kidney donation. Aims: This study was designed to assess the QOL of living related donors in India. Settings and Design: This study was a single-center prospective study. Materials and Methods: The QOL of 106 consecutive related kidney donors was compared before and 6 months after the donation using the World Health Organisation Quality of Life Brief Questionnaire. Statistical Analysis Used: STATA 9.0 (College Station, Texas) was used and a p value less than 0.05 was considered significant. Results: The response rate was 94.3% and the mean age was 43.2±11.95 years. Females constituted 73% of the population. Our study showed a significant improvement in the QOL among three of the four domains. The surgical technique (86- mini open donor nephrectomy, and 14 laparoscopic donor nephrectomy), education status, and marital status did not make any difference in the change in the QOL. Conclusions: Despite a number of our donors being unemployed and not being well educated, live related kidney donation improves the QOL of donors. PMID:21716885

  2. Laser-Assisted In Vitro Fertilization Facilitates Fertilization of Vitrified-Warmed C57BL/6 Mouse Oocytes with Fresh and Frozen-Thawed Spermatozoa, Producing Live Pups

    PubMed Central

    Woods, Stephanie E.; Qi, Peimin; Rosalia, Elizabeth; Chavarria, Tony; Discua, Allan; Mkandawire, John; Fox, James G.; García, Alexis

    2014-01-01

    The utility of cryopreserved mouse gametes for reproduction of transgenic mice depends on development of assisted reproductive technologies, including vitrification of unfertilized mouse oocytes. Due to hardening of the zona pellucida, spermatozoa are often unable to penetrate vitrified-warmed (V-W) oocytes. Laser-assisted in vitro fertilization (LAIVF) facilitates fertilization by allowing easier penetration of spermatozoa through a perforation in the zona. We investigated the efficiency of V-W C57BL/6NTac oocytes drilled by the XYClone laser, compared to fresh oocytes. By using DAP213 for cryoprotection, 83% (1,470/1,762) of vitrified oocytes were recovered after warming and 78% were viable. Four groups were evaluated for two-cell embryo and live offspring efficiency: 1) LAIVF using V-W oocytes, 2) LAIVF using fresh oocytes, 3) conventional IVF using V-W oocytes and 4) conventional IVF using fresh oocytes. First, the groups were tested using fresh C57BL/6NTac spermatozoa (74% motile, 15 million/ml). LAIVF markedly improved the two-cell embryo efficiency using both V-W (76%, 229/298) and fresh oocytes (69%, 135/197), compared to conventional IVF (7%, 12/182; 6%, 14/235, respectively). Then, frozen-thawed C57BL/6NTac spermatozoa (35% motile, 15 million/ml) were used and LAIVF was again found to enhance fertilization efficiency, with two-cell embryo rates of 87% (298/343) using V-W oocytes (P<0.05, compared to fresh spermatozoa), and 73% (195/266) using fresh oocytes. Conventional IVF with frozen-thawed spermatozoa using V-W (6%, 10/168) and fresh (5%, 15/323) oocytes produced few two-cell embryos. Although live offspring efficiency following embryo transfer was greater with conventional IVF (35%, 18/51; LAIVF: 6%, 50/784), advantage was seen with LAIVF in live offspring obtained from total oocytes (5%, 50/1,010; conventional IVF: 2%, 18/908). Our results demonstrated that zona-drilled V-W mouse oocytes can be used for IVF procedures using both fresh and frozen-thawed spermatozoa, producing live pups. The ability to cryopreserve mouse gametes for LAIVF may facilitate management of large-scale transgenic mouse production facilities. PMID:24618785

  3. Can Organized Youth Activities Protect Against Internalizing Problems Among Adolescents Living in Violent Homes?

    PubMed Central

    Gardner, Margo; Browning, Christopher; Brooks-Gunn, Jeanne

    2012-01-01

    Using longitudinal data from a subsample of Hispanic, African American, and white youth enrolled in the Project on Human Development in Chicago Neighborhoods (N = 1,419), we examined the effects of both parental involvement in domestic violence and youth participation in organized out-of-school-time activities on internalizing symptoms during adolescence. We also examined the extent to which participation in organized activities protected youth against the internalizing consequences of domestic violence. We found that intensive participation in either afterschool programs or extracurricular activities was inversely associated with youth internalizing problems. Moreover, we found that intensive participation in afterschool programs weakened the association between parents’ domestic violence and youths’ internalizing problems. PMID:23162370

  4. Organic Tracers from Asphalt in Propolis Produced by Urban Honey Bees, Apis mellifera Linn.

    PubMed

    Alqarni, Abdulaziz S; Rushdi, Ahmed I; Owayss, Ayman A; Raweh, Hael S; El-Mubarak, Aarif H; Simoneit, Bernd R T

    2015-01-01

    Propolis is a gummy material produced by honey bees to protect their hives and currently has drawn the attention of researchers due to its broad clinical use. It has been reported, based only on observations, that honey bees also collect other non-vegetation substances such as paint or asphalt/tar to make propolis. Therefore, propolis samples were collected from bee hives in Riyadh and Al-Bahah, a natural area, Saudi Arabia to determine their compositional characteristics and possible sources of the neutral organic compounds. The samples were extracted with hexane and analyzed by gas chromatography-mass spectrometry. The results showed that the major compounds were n-alkanes, n-alkenes, methyl n-alkanoates, long chain wax esters, triterpenoids and hopanes. The n-alkanes (ranging from C17 to C40) were significant with relative concentrations varying from 23.8 to 56.8% (mean = 44.9+9.4%) of the total extracts. Their odd carbon preference index (CPI) ranged from 3.6 to 7.7, with a maximum concentration at heptacosane indicating inputs from higher plant vegetation wax. The relative concentrations of the n-alkenes varied from 23.8 to 41.19% (mean = 35.6+5.1%), with CPI = 12.4-31.4, range from C25 to C35 and maximum at tritriacontane. Methyl n-alkanoates, ranged from C12 to C26 as acids, with concentrations from 3.11 to 33.2% (mean = 9.6+9.5%). Long chain wax esters and triterpenoids were minor. The main triterpenoids were ?- and ?-amyrins, amyrones and amyryl acetates. The presence of hopanes in some total extracts (up to 12.5%) indicated that the bees also collected petroleum derivatives from vicinal asphalt and used that as an additional ingredient to make propolis. Therefore, caution should be taken when considering the chemical compositions of propolis as potential sources of natural products for biological and pharmacological applications. Moreover, beekeepers should be aware of the proper source of propolis in the flight range of their bee colonies. PMID:26075382

  5. Organic Tracers from Asphalt in Propolis Produced by Urban Honey Bees, Apis mellifera Linn.

    PubMed Central

    Alqarni, Abdulaziz S.; Rushdi, Ahmed I.; Owayss, Ayman A.; Raweh, Hael S.; El-Mubarak, Aarif H.; Simoneit, Bernd R. T.

    2015-01-01

    Propolis is a gummy material produced by honey bees to protect their hives and currently has drawn the attention of researchers due to its broad clinical use. It has been reported, based only on observations, that honey bees also collect other non-vegetation substances such as paint or asphalt/tar to make propolis. Therefore, propolis samples were collected from bee hives in Riyadh and Al-Bahah, a natural area, Saudi Arabia to determine their compositional characteristics and possible sources of the neutral organic compounds. The samples were extracted with hexane and analyzed by gas chromatography-mass spectrometry. The results showed that the major compounds were n-alkanes, n-alkenes, methyl n-alkanoates, long chain wax esters, triterpenoids and hopanes. The n-alkanes (ranging from C17 to C40) were significant with relative concentrations varying from 23.8 to 56.8% (mean = 44.9+9.4%) of the total extracts. Their odd carbon preference index (CPI) ranged from 3.6 to 7.7, with a maximum concentration at heptacosane indicating inputs from higher plant vegetation wax. The relative concentrations of the n-alkenes varied from 23.8 to 41.19% (mean = 35.6+5.1%), with CPI = 12.4-31.4, range from C25 to C35 and maximum at tritriacontane. Methyl n-alkanoates, ranged from C12 to C26 as acids, with concentrations from 3.11 to 33.2% (mean = 9.6+9.5%). Long chain wax esters and triterpenoids were minor. The main triterpenoids were α- and β-amyrins, amyrones and amyryl acetates. The presence of hopanes in some total extracts (up to 12.5%) indicated that the bees also collected petroleum derivatives from vicinal asphalt and used that as an additional ingredient to make propolis. Therefore, caution should be taken when considering the chemical compositions of propolis as potential sources of natural products for biological and pharmacological applications. Moreover, beekeepers should be aware of the proper source of propolis in the flight range of their bee colonies. PMID:26075382

  6. Organic Compounds Produced by Photolysis of Realistic Interstellar and Cometary Ice Analogs Containing Methanol

    NASA Technical Reports Server (NTRS)

    Bernstein, Max P.; Sandford, Scott A.; Allamandola, Louis J.; Chang, Sherwood; Scharberg, Maureen A.

    1995-01-01

    The InfraRed (IR) spectra of UltraViolet (UV) and thermally processed, methanol-containing interstellar / cometary ice analogs at temperatures from 12 to 300 K are presented. Infrared spectroscopy, H-1 and C-13 Nuclear Magnetic Resonance (NMR) spectroscopy, and gas chromatography-mass spectrometry indicate that CO (carbon monoxide), CO2 (carbon dioxide), CH4 (methane), HCO (the formyl radical), H2CO (formaldehyde), CH3CH2OH (ethanol), HC([double bond]O)NH2 (formamide), CH3C([double bond]O)NH2 (acetamide), and R[single bond]C[triple bond]N (nitriles) are formed. In addition, the organic materials remaining after photolyzed ice analogs have been warmed to room temperature contain (in rough order of decreasing abundance), (1) hexamethylenetetramine (HMT, C6H12N4), (2) ethers, alcohols, and compounds related to PolyOxyMethylene (POM, ([single bond]CH2O[single bond](sub n)), and (3) ketones (R[single bond]C([double bond]O)[single bond]R') and amides (H2NC([double bond]O)[single bond]R). Most of the carbon in these residues is thought to come from the methanol in the original ice. Deuterium and C-13 isotopic labeling demonstrates that methanol is definitely the source of carbon in HMT. High concentrations of HMT in interstellar and cometary ices could have important astrophysical consequences. The ultraviolet photolysis of HMT frozen in H2O ice readily produces the 'XCN' band observed in the spectra of protostellar objects and laboratory ices, as well as other nitriles. Thus, HMT may be a precursor of XCN and a source of CN in comets and the interstellar medium. Also, HMT is known to hydrolyze under acidic conditions to yield ammonia, formaldehyde, and amino acids. Thus, HMT may be a significant source of prebiogenic compounds on asteroidal parent bodies. A potential mechanism for the radiative formation of HMT in cosmic ices is outlined.

  7. On the purposes of color for living beings: toward a theory of color organization.

    PubMed

    Pinna, Baingio; Reeves, Adam

    2015-01-01

    Phylogenetic and paleontological evidence indicates that in the animal kingdom the ability to perceive colors evolved independently several times over the course of millennia. This implies a high evolutionary neural investment and suggests that color vision provides some fundamental biological benefits. What are these benefits? Why are some animals so colorful? What are the adaptive and perceptual meanings of polychromatism? We suggest that in addition to the discrimination of light and surface chromaticity, sensitivity to color contributes to the whole, the parts and the fragments of perceptual organization. New versions of neon color spreading and the watercolor illusion indicate that the visual purpose of color in humans is threefold: to inter-relate each chromatic component of an object, thus favoring the emergence of the whole; to support a part-whole organization in which components reciprocally enhance each other by amodal completion; and, paradoxically, to reveal fragments and hide the whole-that is, there is a chromatic parceling-out process of separation, division, and fragmentation of the whole. The evolution of these contributions of color to organization needs to be established, but traces of it can be found in Harlequin camouflage by animals and in the coloration of flowers. PMID:24374380

  8. Independent Synchronized Control and Visualization of Interactions between Living Cells and Organisms

    PubMed Central

    Rouger, Vincent; Bordet, Guillaume; Couillault, Carole; Monneret, Serge; Mailfert, Sébastien; Ewbank, Jonathan J.; Pujol, Nathalie; Marguet, Didier

    2014-01-01

    To investigate the early stages of cell-cell interactions occurring between living biological samples, imaging methods with appropriate spatiotemporal resolution are required. Among the techniques currently available, those based on optical trapping are promising. Methods to image trapped objects, however, in general suffer from a lack of three-dimensional resolution, due to technical constraints. Here, we have developed an original setup comprising two independent modules: holographic optical tweezers, which offer a versatile and precise way to move multiple objects simultaneously but independently, and a confocal microscope that provides fast three-dimensional image acquisition. The optical decoupling of these two modules through the same objective gives users the possibility to easily investigate very early steps in biological interactions. We illustrate the potential of this setup with an analysis of infection by the fungus Drechmeria coniospora of different developmental stages of Caenorhabditis elegans. This has allowed us to identify specific areas on the nematode’s surface where fungal spores adhere preferentially. We also quantified this adhesion process for different mutant nematode strains, and thereby derive insights into the host factors that mediate fungal spore adhesion. PMID:24853738

  9. Programmable living material containing reporter micro-organisms permits quantitative detection of oligosaccharides.

    PubMed

    Mora, Carlos A; Herzog, Antoine F; Raso, Renzo A; Stark, Wendelin J

    2015-08-01

    The increasing molecular understanding of many diseases today permits the development of new diagnostic methods. However, few easy-to-handle and inexpensive tools exist for common diseases such as food disorders. Here we present a living material based analytical sensor (LiMBAS) containing genetically modified bacteria (Escherichia coli) immobilized and protected in a thin layer between a nanoporous and support polymer membrane for a facile quantification of disease-relevant oligosaccharides. The bacteria were engineered to fluoresce in response to the analyte to reveal its diffusion behavior when using a blue-light source and optical filter. We demonstrated that the diffusion zone diameter was related semi-logarithmically to the analyte concentration. LiMBAS could accurately quantify lactose or galactose in undiluted food samples and was able to measure food intolerance relevant concentrations in the range of 1-1000 mM requiring a sample volume of 1-10 μL. LiMBAS was storable for at least seven days without losing functionality at 4 °C. A wide range of genetic tools for E. coli are readily available thus allowing the reprogramming of the material to serve as biosensor for other molecules. In combination with smartphones, an automated diagnostic analysis becomes feasible which would also allow untrained people to use LiMBAS. PMID:25988843

  10. Improving produce safety by stabilizing chlorine in washing solutions with high organic loads

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The need for technologies to protect our nation’s food supply and support sustained growth of the produce industry has never been more urgent. The produce industry currently faces a major potential food safety problem, since the chlorine needed to prevent pathogen survival is depleted during commer...

  11. Drosophotoxicology: An Emerging Research Area for Assessing Nanoparticles Interaction with Living Organisms

    PubMed Central

    Chifiriuc, Mariana Carmen; Ratiu, Attila Cristian; Popa, Marcela; Ecovoiu, Alexandru Al.

    2016-01-01

    The rapid development of nanotechnology allowed the fabrication of a wide range of different nanomaterials, raising many questions about their safety and potential risks for the human health and environment. Most of the current nanotoxicology research is not standardized, hampering any comparison or reproducibility of the obtained results. Drosophotoxicology encompasses the plethora of methodological approaches addressing the use of Drosophila melanogaster as a choice organism in toxicology studies. Drosophila melanogaster model offers several important advantages, such as a relatively simple genome structure, short lifespan, low maintenance cost, readiness of experimental manipulation comparative to vertebrate models from both ethical and technical points of view, relevant gene homology with higher organisms, and ease of obtaining mutant phenotypes. The molecular pathways, as well as multiple behavioral and developmental parameters, can be evaluated using this model in lower, medium or high throughput type assays, allowing a systematic classification of the toxicity levels of different nanomaterials. The purpose of this paper is to review the current research on the applications of Drosophila melanogaster model for the in vivo assessment of nanoparticles toxicity and to reveal the huge potential of this model system to provide results that could enable a proper selection of different nanostructures for a certain biomedical application. PMID:26907252

  12. Drosophotoxicology: An Emerging Research Area for Assessing Nanoparticles Interaction with Living Organisms.

    PubMed

    Chifiriuc, Mariana Carmen; Ratiu, Attila Cristian; Popa, Marcela; Ecovoiu, Alexandru Al

    2016-01-01

    The rapid development of nanotechnology allowed the fabrication of a wide range of different nanomaterials, raising many questions about their safety and potential risks for the human health and environment. Most of the current nanotoxicology research is not standardized, hampering any comparison or reproducibility of the obtained results. Drosophotoxicology encompasses the plethora of methodological approaches addressing the use of Drosophila melanogaster as a choice organism in toxicology studies. Drosophila melanogaster model offers several important advantages, such as a relatively simple genome structure, short lifespan, low maintenance cost, readiness of experimental manipulation comparative to vertebrate models from both ethical and technical points of view, relevant gene homology with higher organisms, and ease of obtaining mutant phenotypes. The molecular pathways, as well as multiple behavioral and developmental parameters, can be evaluated using this model in lower, medium or high throughput type assays, allowing a systematic classification of the toxicity levels of different nanomaterials. The purpose of this paper is to review the current research on the applications of Drosophila melanogaster model for the in vivo assessment of nanoparticles toxicity and to reveal the huge potential of this model system to provide results that could enable a proper selection of different nanostructures for a certain biomedical application. PMID:26907252

  13. Acoustic Observation of Living Organisms Reveals the Upper Limit of the Oxygen Minimum Zone

    PubMed Central

    Bertrand, Arnaud; Ballón, Michael; Chaigneau, Alexis

    2010-01-01

    Background Oxygen minimum zones (OMZs) are expanding in the World Ocean as a result of climate change and direct anthropogenic influence. OMZ expansion greatly affects biogeochemical processes and marine life, especially by constraining the vertical habitat of most marine organisms. Currently, monitoring the variability of the upper limit of the OMZs relies on time intensive sampling protocols, causing poor spatial resolution. Methodology/Principal Findings Using routine underwater acoustic observations of the vertical distribution of marine organisms, we propose a new method that allows determination of the upper limit of the OMZ with a high precision. Applied in the eastern South-Pacific, this original sampling technique provides high-resolution information on the depth of the upper OMZ allowing documentation of mesoscale and submesoscale features (e.g., eddies and filaments) that structure the upper ocean and the marine ecosystems. We also use this information to estimate the habitable volume for the world's most exploited fish, the Peruvian anchovy (Engraulis ringens). Conclusions/Significance This opportunistic method could be implemented on any vessel geared with multi-frequency echosounders to perform comprehensive high-resolution monitoring of the upper limit of the OMZ. Our approach is a novel way of studying the impact of physical processes on marine life and extracting valid information about the pelagic habitat and its spatial structure, a crucial aspect of Ecosystem-based Fisheries Management in the current context of climate change. PMID:20442791

  14. Treatment of produced waters for removal of soluble organics and toxicity reduction using the GAC-FBR process

    SciTech Connect

    Sunday, A.; Cook, J.; Rajan, R.; Hickey, R.

    1995-12-31

    Pilot studies were conducted using 550 gallon per day biological Granular Activated Carbon-Fluidized Bed Reactor (GAC-FBR) systems to treat four different produced waters obtained from on-shore and off-shore production facilities. The organic and inorganic composition of these produced waters varied greatly from site to site. Total dissolved solids ranged from 0.8% to 18.5%; BTEX concentrations varied from 470 {mu}g/L to greater than 4500 {mu}g/L. Organic carbon concentrations of up to 440 mg/L were observed. Sulfide concentrations ranged from nil to greater than 800 mg/L as S. Organic loading rates up to 86.6 kgCOD/cu.m-day were applied to the GAC-FBR. Successful treatment was achieved at hydraulic retention times as low as 7 minutes. Essentially complete removal of BTEX and total volatile hydrocarbons was demonstrated for each of the produced water samples; significant removal of non-purgable dissolved organic carbon was also observed. Overall BTEX removals of >99.9% were consistently achieved. Results from several different toxicity assays indicated that the GAC-FBR was able to achieve complete reduction of toxicity with several of the produced waters tested.

  15. PRELIMINARY ANALYSIS OF CANCER RATES IN PRIMARY ORGANIC CHEMICAL-PRODUCING COUNTIES

    EPA Science Inventory

    The study is designed to determine whether there is an association between cancer mortality and the production of environmental carcinogens. Mortality rates of counties containing organic chemical production facilities are compared to rates of control counties. Twelve different c...

  16. Morphofunctional Merits of an In Vivo Cryotechnique for Living Animal Organs: Challenges of Clinical Applications from Basic Medical Research

    PubMed Central

    Ohno, Shinichi

    2016-01-01

    Recent advances in molecular and genetic techniques have led to establishment of new biomedical fields; however, morphological techniques are still required for a more precise understanding of functioning cells and tissues. Conventional preparation procedures involve a series of chemical fixation, alcohol dehydration, paraffin or epoxy resin embedding, sectioning, and staining steps. In these steps, technical artifacts modify original morphologies of the cells being examined. Furthermore, difficulties are associated with capturing dynamic images in vivo using conventional chemical fixation. Therefore, a quick-freezing (QF) method was introduced for biological specimens in the 20th century. However, specimens have to be resected from living animal organs with blood supply, and their dynamical morphologies have not been investigated in detail using the QF method. In order to overcome these issues, the tissue resection step of organs had to be avoided and samples needed to be frozen under blood circulation. Our in vivo cryotechnique (IVCT) was an original technique to cryofix samples without resecting their tissues. The most significant merit of IVCT is that blood circulation into organs is preserved at the exact moment of freezing, which has been useful for arresting transient physiological processes of cells and tissues and maintaining their components in situ. PMID:27006516

  17. Nanoscale Metal-Organic Frameworks for Ratiometric Oxygen Sensing in Live Cells.

    PubMed

    Xu, Ruoyu; Wang, Youfu; Duan, Xiaopin; Lu, Kuangda; Micheroni, Daniel; Hu, Aiguo; Lin, Wenbin

    2016-02-24

    We report the design of a phosphorescence/fluorescence dual-emissive nanoscale metal-organic framework (NMOF), R-UiO, as an intracellular oxygen (O2) sensor. R-UiO contains a Pt(II)-porphyrin ligand as an O2-sensitive probe and a Rhodamine-B isothiocyanate ligand as an O2-insensitive reference probe. It exhibits good crystallinity, high stability, and excellent ratiometric luminescence response to O2 partial pressure. In vitro experiments confirmed the applicability of R-UiO as an intracellular O2 biosensor. This work is the first report of a NMOF-based intracellular oxygen sensor and should inspire the design of ratiometric NMOF sensors for other important analytes in biological systems. PMID:26864385

  18. Automated dynamic sampling system for the on-line monitoring of biogenic emissions from living organisms.

    PubMed

    Vercammen, J; Pham-Tuan, H; Sandra, P

    2001-09-28

    An automated system for continuous on-line monitoring of biogenic emissions is presented. The system is designed in such a way that volatiles, emitted as reaction to biotic or abiotic stress, can be unequivocally elucidated. Two identical sampling units, named target and reference bulb, are therefore incorporated into the system and consecutively analyzed in monitoring experiments. A number of precautions were considered during these experiments to avoid the application of unwanted stress onto both organisms. Firstly, the system is constructed in such a way that both bulbs are continuously flushed, i.e. before, during and after analysis, with high purity air to avoid any accumulation of emitted volatiles. Moreover, the air is pre-humidified by bubbling it through water to sustain the biological samples for longer periods in the in vitro environment. Sorptive enrichment on polydimethylsiloxane (PDMS) was used to trap the headspace volatiles. The hydrophobic nature of this material permitted easy removal of trapped moisture by direct flushing of the sampling cartridge with dry air before desorption. The system was used to monitor the emissions from in vitro mechanically wounded ivy (Hedera helix) and of in vitro grown tomato plants (Lycopersicon esculentum Mill.) upon cotton leafworm (Spodoptera littoralis) feeding. Differences in light and dark floral emissions of jasmine (Jasminum polyanthum) were also studied. PMID:11681578

  19. Understanding the Effects of Space Radiation on Living Organisms and its Implication for Astrobiology

    NASA Technical Reports Server (NTRS)

    Tarter, Jill C.; Rothschild, Lynn J.

    2012-01-01

    The planetary environment around a star will be assaulted with various amounts of radiation. including solar and ionizing radiation. The amount and type varies with the type of star, the distance from the star, time of day, and other variables. While some radiation is critical to life on Earth, especially from 400-750 nm (so-called visible and photosynthetically active radiation), the effects of ultraviolet and ionizing radiation can be hazardous and even deadly. This is because life is based on organic carbon, which is susceptible to radiation damage. Radiation regimes in our own solar system address specifically radiation in our solar system with a main sequence star. The possibility remains of planets around red dwarfs. Such stars are much smaller in mass than the Sun (between 0.5 and .08 M(sub Sun), and so their temperature and stellar luminosity are low and peaked in the red. Since red dwarfs comprise about 75% of all stars in the galaxy, the possibility of life on planets around red dwarfs has been examined.

  20. Nature of Pre-Earthquake Phenomena and their Effects on Living Organisms.

    PubMed

    Freund, Friedemann; Stolc, Viktor

    2013-01-01

    Earthquakes occur when tectonic stresses build up deep in the Earth before catastrophic rupture. During the build-up of stress, processes that occur in the crustal rocks lead to the activation of highly mobile electronic charge carriers. These charge carriers are able to flow out of the stressed rock volume into surrounding rocks. Such outflow constitutes an electric current, which generates electromagnetic (EM) signals. If the outflow occurs in bursts, it will lead to short EM pulses. If the outflow is continuous, the currents may fluctuate, generating EM emissions over a wide frequency range. Only ultralow and extremely low frequency (ULF/ELF) waves travel through rock and can reach the Earth surface. The outflowing charge carriers are (i) positively charged and (ii) highly oxidizing. When they arrive at the Earth surface from below, they build up microscopic electric fields, strong enough to field-ionize air molecules. As a result, the air above the epicentral region of an impending major earthquake often becomes laden with positive airborne ions. Medical research has long shown that positive airborne ions cause changes in stress hormone levels in animals and humans. In addition to the ULF/ELF emissions, positive airborne ions can cause unusual reactions among animals. When the charge carriers flow into water, they oxidize water to hydrogen peroxide. This, plus oxidation of organic compounds, can cause behavioral changes among aquatic animals. PMID:26487415

  1. Oysters produce an organic-inorganic adhesive for intertidal reef construction.

    PubMed

    Burkett, Jeremy R; Hight, Lauren M; Kenny, Paul; Wilker, Jonathan J

    2010-09-15

    Coastal ecosystems rely upon oyster reefs to filter water, provide protection from storms, and build habitat for other species. From a chemistry perspective, few details are available to illustrate how these shellfish construct such extensive reef systems. Experiments presented here show that oysters generate a biomineralized adhesive material for aggregating into large communities. This cement is an organic-inorganic hybrid and differs from the surrounding shells by displaying an alternate CaCO(3) crystal form, a cross-linked organic matrix, and an elevated protein content. Emerging themes and unique aspects are both revealed when comparing oyster cement to the adhesives of other marine organisms. The presence of cross-linked proteins provides an analogy to mussel and barnacle adhesives whereas the high inorganic content is exclusive to oysters. With a description of oyster cement in hand we gain strategies for developing synthetic composite materials as well as a better understanding of the components needed for healthy coastal environments. PMID:20722392

  2. New extension of the Mitchell Theory for oxidative phosphorylation in mitochondria of living organisms.

    PubMed

    Kadenbach, Bernhard; Ramzan, Rabia; Wen, Li; Vogt, Sebastian

    2010-03-01

    The Mitchell Theory implies the proton motive force Deltap across the inner mitochondrial membrane as the energy-rich intermediate of oxidative phosphorylation. Deltap is composed mainly of an electrical (DeltaPsi(m)) and a chemical part (DeltapH) and generated by the respiratory chain complexes I, III and IV. It is consumed mostly by the ATP synthase (complex V) to produce ATP. The free energy of electron transport within the proton pumps is sufficient to generate Deltap of about 240 mV. The proton permeability of biological membranes, however, increases exponentially above 130 mV leading to a waste of energy at high values (DeltaPsi(m)>140 mV). In addition, at DeltaPsi(m)>140 mV, the production of the superoxide radical anion O(2)(-) at complexes I, II and III increases exponentially with increasing DeltaPsi(m). O(2)(-) and its neutral product H(2)O(2) (=ROS, reactive oxygen species) induce oxidative stress which participates in aging and in the generation of degenerative diseases. Here we describe a new mechanism which acts independently of the Mitchell Theory and keeps DeltaPsi(m) at low values through feedback inhibition of complex IV (cytochrome c oxidase) at high ATP/ADP ratios, thus preventing the formation of ROS and maintaining high efficiency of oxidative phosphorylation. PMID:19409964

  3. Environmental Feedbacks and Engineered Nanoparticles: Mitigation of Silver Nanoparticle Toxicity to Chlamydomonas reinhardtii by Algal-Produced Organic Compounds

    PubMed Central

    Stevenson, Louise M.; Dickson, Helen; Klanjscek, Tin; Keller, Arturo A.; McCauley, Edward; Nisbet, Roger M.

    2013-01-01

    The vast majority of nanotoxicity studies measures the effect of exposure to a toxicant on an organism and ignores the potentially important effects of the organism on the toxicant. We investigated the effect of citrate-coated silver nanoparticles (AgNPs) on populations of the freshwater alga Chlamydomonas reinhardtii at different phases of batch culture growth and show that the AgNPs are most toxic to cultures in the early phases of growth. We offer strong evidence that reduced toxicity occurs because extracellular dissolved organic carbon (DOC) compounds produced by the algal cells themselves mitigate the toxicity of AgNPs. We analyzed this feedback with a dynamic model incorporating algal growth, nanoparticle dissolution, bioaccumulation of silver, DOC production and DOC-mediated inactivation of nanoparticles and ionic silver. Our findings demonstrate how the feedback between aquatic organisms and their environment may impact the toxicity and ecological effects of engineered nanoparticles. PMID:24086348

  4. The relative roles of the otolith organs and semicircular canals in producing space motion sickness

    NASA Technical Reports Server (NTRS)

    Parker, D. E.

    1998-01-01

    Inflight and post-landing "immunity" to the "coriolis sickness susceptibility test", observed during the Skylab M131 experiment, suggests that the otolith organs play a major role in space motion sickness (SMS). This view is supported by the report that ocular counter-torsion asymmetries correlate with SMS incidence and severity. Further data indicate that sensory-motor adaptation to microgravity includes a process whereby central interpretation of otolith signals is biased from "tilt" toward translation. However, unexpected responses to linear acceleration suggest the importance of graviceptors distributed throughout the body in addition to the vestibular otolith organs. Research is needed to assess distributed graviceptor effects.

  5. The relative roles of the otolith organs and semicircular canals in producing space motion sickness.

    PubMed

    Parker, D E

    1998-01-01

    Inflight and post-landing "immunity" to the "coriolis sickness susceptibility test", observed during the Skylab M131 experiment, suggests that the otolith organs play a major role in space motion sickness (SMS). This view is supported by the report that ocular counter-torsion asymmetries correlate with SMS incidence and severity. Further data indicate that sensory-motor adaptation to microgravity includes a process whereby central interpretation of otolith signals is biased from "tilt" toward translation. However, unexpected responses to linear acceleration suggest the importance of graviceptors distributed throughout the body in addition to the vestibular otolith organs. Research is needed to assess distributed graviceptor effects. PMID:9416590

  6. The O/OREOS mission: first science data from the Space Environment Survivability of Living Organisms (SESLO) payload.

    PubMed

    Nicholson, Wayne L; Ricco, Antonio J; Agasid, Elwood; Beasley, Christopher; Diaz-Aguado, Millan; Ehrenfreund, Pascale; Friedericks, Charles; Ghassemieh, Shakib; Henschke, Michael; Hines, John W; Kitts, Christopher; Luzzi, Ed; Ly, Diana; Mai, Nghia; Mancinelli, Rocco; McIntyre, Michael; Minelli, Giovanni; Neumann, Michael; Parra, Macarena; Piccini, Matthew; Rasay, R Mike; Ricks, Robert; Santos, Orlando; Schooley, Aaron; Squires, David; Timucin, Linda; Yost, Bruce; Young, Anthony

    2011-12-01

    We report the first telemetered spaceflight science results from the orbiting Space Environment Survivability of Living Organisms (SESLO) experiment, executed by one of the two 10 cm cube-format payloads aboard the 5.5 kg Organism/Organic Exposure to Orbital Stresses (O/OREOS) free-flying nanosatellite. The O/OREOS spacecraft was launched successfully to a 72° inclination, 650 km Earth orbit on 19 November 2010. This satellite provides access to the radiation environment of space in relatively weak regions of Earth's protective magnetosphere as it passes close to the north and south magnetic poles; the total dose rate is about 15 times that in the orbit of the International Space Station. The SESLO experiment measures the long-term survival, germination, and growth responses, including metabolic activity, of Bacillus subtilis spores exposed to the microgravity, ionizing radiation, and heavy-ion bombardment of its high-inclination orbit. Six microwells containing wild-type (168) and six more containing radiation-sensitive mutant (WN1087) strains of dried B. subtilis spores were rehydrated with nutrient medium after 14 days in space to allow the spores to germinate and grow. Similarly, the same distribution of organisms in a different set of microwells was rehydrated with nutrient medium after 97 days in space. The nutrient medium included the redox dye Alamar blue, which changes color in response to cellular metabolic activity. Three-color transmitted intensity measurements of all microwells were telemetered to Earth within days of each of the 48 h growth experiments. We report here on the evaluation and interpretation of these spaceflight data in comparison to delayed-synchronous laboratory ground control experiments. PMID:22091486

  7. Fluid Forces Enhance the Performance of an Aspirant Leader in Self-Organized Living Groups

    PubMed Central

    De Rosis, Alessandro

    2014-01-01

    In this paper, the performance of an individual aiming at guiding a self-organized group is numerically investigated. A collective behavioural model is adopted, accounting for the mutual repulsion, attraction and orientation experienced by the individuals. Moreover, these represent a set of solid particles which are supposed to be immersed in a fictitious viscous fluid. In particular, the lattice Boltzmann and Immersed boundary methods are used to predict the fluid dynamics, whereas the effect of the hydrodynamic forces on particles is accounted for by solving the equation of the solid motion through the time discontinuous Galerkin scheme. Numerical simulations are carried out by involving the individuals in a dichotomous process. On the one hand, an aspirant leader (AL) additional individual is added to the system. AL is forced to move along a prescribed direction which intersects the group. On the other hand, these tend to depart from an obstacle represented by a rotating lamina which is placed in the fluid domain. A numerical campaign is carried out by varying the fluid viscosity and, as a consequence, the hydrodynamic field. Moreover, scenarios characterized by different values of the size of the group are investigated. In order to estimate the AL's performance, a proper parameter is introduced, depending on the number of individuals following AL. Present findings show that the sole collective behavioural equations are insufficient to predict the AL's performance, since the motion is drastically affected by the presence of the surrounding fluid. With respect to the existing literature, the proposed numerical model is enriched by accounting for the presence of the encompassing fluid, thus computing the hydrodynamic forces arising when the individuals move. PMID:25501965

  8. Living roots magnify the response of soil organic carbon decomposition to temperature in temperate grassland.

    PubMed

    Hill, Paul W; Garnett, Mark H; Farrar, John; Iqbal, Zafar; Khalid, Muhammad; Soleman, Nawaf; Jones, Davey L

    2015-03-01

    Increasing atmospheric carbon dioxide (CO2 ) concentration is both a strong driver of primary productivity and widely believed to be the principal cause of recent increases in global temperature. Soils are the largest store of the world's terrestrial C. Consequently, many investigations have attempted to mechanistically understand how microbial mineralisation of soil organic carbon (SOC) to CO2 will be affected by projected increases in temperature. Most have attempted this in the absence of plants as the flux of CO2 from root and rhizomicrobial respiration in intact plant-soil systems confounds interpretation of measurements. We compared the effect of a small increase in temperature on respiration from soils without recent plant C with the effect on intact grass swards. We found that for 48 weeks, before acclimation occurred, an experimental 3 °C increase in sward temperature gave rise to a 50% increase in below ground respiration (ca. 0.4 kg C m(-2) ; Q10  = 3.5), whereas mineralisation of older SOC without plants increased with a Q10 of only 1.7 when subject to increases in ambient soil temperature. Subsequent (14) C dating of respired CO2 indicated that the presence of plants in swards more than doubled the effect of warming on the rate of mineralisation of SOC with an estimated mean C age of ca. 8 years or older relative to incubated soils without recent plant inputs. These results not only illustrate the formidable complexity of mechanisms controlling C fluxes in soils but also suggest that the dual biological and physical effects of CO2 on primary productivity and global temperature have the potential to synergistically increase the mineralisation of existing soil C. PMID:25351704

  9. Living roots magnify the response of soil organic carbon decomposition to temperature in temperate grassland

    PubMed Central

    Hill, Paul W; Garnett, Mark H; Farrar, John; Iqbal, Zafar; Khalid, Muhammad; Soleman, Nawaf; Jones, Davey L

    2015-01-01

    Increasing atmospheric carbon dioxide (CO2) concentration is both a strong driver of primary productivity and widely believed to be the principal cause of recent increases in global temperature. Soils are the largest store of the world's terrestrial C. Consequently, many investigations have attempted to mechanistically understand how microbial mineralisation of soil organic carbon (SOC) to CO2 will be affected by projected increases in temperature. Most have attempted this in the absence of plants as the flux of CO2 from root and rhizomicrobial respiration in intact plant-soil systems confounds interpretation of measurements. We compared the effect of a small increase in temperature on respiration from soils without recent plant C with the effect on intact grass swards. We found that for 48 weeks, before acclimation occurred, an experimental 3 °C increase in sward temperature gave rise to a 50% increase in below ground respiration (ca. 0.4 kg C m?2; Q10 = 3.5), whereas mineralisation of older SOC without plants increased with a Q10 of only 1.7 when subject to increases in ambient soil temperature. Subsequent 14C dating of respired CO2 indicated that the presence of plants in swards more than doubled the effect of warming on the rate of mineralisation of SOC with an estimated mean C age of ca. 8 years or older relative to incubated soils without recent plant inputs. These results not only illustrate the formidable complexity of mechanisms controlling C fluxes in soils but also suggest that the dual biological and physical effects of CO2 on primary productivity and global temperature have the potential to synergistically increase the mineralisation of existing soil C. PMID:25351704

  10. Fluid forces enhance the performance of an aspirant leader in self-organized living groups.

    PubMed

    De Rosis, Alessandro

    2014-01-01

    In this paper, the performance of an individual aiming at guiding a self-organized group is numerically investigated. A collective behavioural model is adopted, accounting for the mutual repulsion, attraction and orientation experienced by the individuals. Moreover, these represent a set of solid particles which are supposed to be immersed in a fictitious viscous fluid. In particular, the lattice Boltzmann and Immersed boundary methods are used to predict the fluid dynamics, whereas the effect of the hydrodynamic forces on particles is accounted for by solving the equation of the solid motion through the time discontinuous Galerkin scheme. Numerical simulations are carried out by involving the individuals in a dichotomous process. On the one hand, an aspirant leader (AL) additional individual is added to the system. AL is forced to move along a prescribed direction which intersects the group. On the other hand, these tend to depart from an obstacle represented by a rotating lamina which is placed in the fluid domain. A numerical campaign is carried out by varying the fluid viscosity and, as a consequence, the hydrodynamic field. Moreover, scenarios characterized by different values of the size of the group are investigated. In order to estimate the AL's performance, a proper parameter is introduced, depending on the number of individuals following AL. Present findings show that the sole collective behavioural equations are insufficient to predict the AL's performance, since the motion is drastically affected by the presence of the surrounding fluid. With respect to the existing literature, the proposed numerical model is enriched by accounting for the presence of the encompassing fluid, thus computing the hydrodynamic forces arising when the individuals move. PMID:25501965

  11. Grass-Based Dairy Production Provides a Viable Option for Producing Organic Milk in Pennsylvania

    Technology Transfer Automated Retrieval System (TEKTRAN)

    More intensive use of pasture and the transition to organic production are being used to reduce production costs and increase profitability of some small dairy farms in Pennsylvania. Simulation of farm production systems, supported by case study farm data, was used to compare economic benefits and e...

  12. Volatile Organic Compounds Produced by Bacteria from the Poultry Processing Environment

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In recent years the characterization of volatile organic compounds (VOCs) emitted from food-borne bacteria has prompted studies on the development of approaches to utilize the profile of volatiles emitted as a way of detecting contamination. We have examined VOCs from poultry with this in mind. Patt...

  13. Marine protozoa produce organic matter with a high affinity for PCBs during grazing.

    PubMed

    Kujawinski, E B; Farrington, J W; Moffett, J W

    2001-10-15

    Processes influencing organic carbon distribution and composition can control the speciation of organic contaminants such as polychlorinated biphenyls (PCBs) and ultimately determine their residence time in aquatic environments. Protozoan grazers are active in the remineralization and recycling of organic material both in the water column and at the sediment-water interface. Thus, they influence the quality and quantity of potential PCB binding substrates in the suspended and dissolved phases of aqueous systems. In this study, common headspace systems were used to compare the chlorobiphenyl-binding affinity of dissolved organic carbon (DOC) in protozoan and bacterial culture filtrates (<0.2 microm) relative to DOC in a seawater control. Culture filtrates from three marine protozoan species were compared-Uronema sp., Cafeteria sp., and Paraphysomonas imperforata. Each protozoan species was fed the same bacterial prey, Halomonas halodurans, which was also used as a bacterial control. Affinities of culture DOC for [14C]3,3',4,4'-tetrachlorobiphenyl (IUPAC 77) were normalized to DOC and surfactant concentrations. Values of DOC equilibrium partition coefficients (K(DOC)) ranged from 10(4.6) in seawater (Vineyard Sound, MA) to 10(5.4) and 10(5.5) in protist cultures, indicating that grazer-modified DOC was a better sorbent for PCBs than DOC in bacterial or seawater controls. PMID:11686367

  14. Identification of Biologically-Produced Organic Matter in an Aquifer System using Stable Isotope Labeling

    NASA Astrophysics Data System (ADS)

    Kujawinski, E. B.; Mailloux, B. J.; Morrison, L.

    2004-12-01

    The carbon cycle in aquifer systems is poorly understood. In particular, the role of prokaryotic and eukaryotic microbes in the cycling of organic matter (OM) has not been well documented. The goal of this work was to utilize stable isotopes in combination with geochemical and microbial methods to study microbially-mediated OM transformations in aquifers and aquifer sediments. A laboratory flow-through column experiment was conducted with sediment collected from a pristine, shallow, coastal plain aquifer. The groundwater medium was amended with low levels of an isotopically labeled nutrient, 13C-acetate. At pre-determined time points, organic matter (OM) was isolated from the sediment and groundwater. OM components were analyzed by isotope-ratio GC-MS and electrospray ionization (ESI) Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). The incorporation of 13C was examined for both the aqueous phase and sediment bound OM. Analyzing both dissolved and adsorbed fractions enabled us to determine the relative importance of each on microbe-mediated OM transformations. The incorporation of 13C allowed us to estimate residence times of different organic matter fractions and to answer fundamental questions about organic matter lability in the subsurface environment.

  15. Survival of Organic Materials in Ancient Cryovolcanically-Produced Halite Crystals

    NASA Technical Reports Server (NTRS)

    Zolensky, M.; Fries, M.; Chan, Q. H.-S.; Kebukawa, Y.; Bodnar, R.; Burton, A.; Callahan, M.; Steele, A.; Sandford, S.

    2015-01-01

    Spectroscopic evidence supports the presence of Mg-Na-K salts derived from cryovolcanism on the surface of Europa. Halite (NaCl) is effective at very long-term preservation of organic phases and structures. Collection of salt crystals from Europan plumes would provide solid inclusions of organics, potentially also biomaterials, all suitable for analysis. Two thermally-metamorphosed ordinary chondrite regolith breccias (Monahans 1998 (H5) and Zag (H3-6)) contain fluid and solid inclusion-bearing halite crystals, dated to approximately 4.5 billion years, and thus the trapped aqueous fluids and solids are at least as old. Heating/freezing studies of the aqueous fluid inclusions in these halites demonstrated that they were trapped near 25 degrees Centigrade, and their continued presence in the halite grains requires that their incorporation into the H chondrite asteroid occurred after that body's metamorphism ended, since heating would have dessicated the halite. O and H isotopes of the trapped fluids are consistent with mixing of asteroidal and cometary water. Cryovolcanic Origin of the Halite: We hypothesize that these meteoritic halites derive from ancient cryovolcanism based on the following points. (1) Salts crystals are observed as products of current cryovolcanism on Enceladus. (2) In-situ spacecraft analysis of some of the icy grains associated with the Enceladus salt found minor organic or siliceous components, including methane, also found in the Monahans halite. (3) Cryovolcanic fluids are observed to be in chemical disequilibrium, reflecting incomplete reactions between interior volatiles and rocky materials. The coexistence of N2 and HCN in Enceladus' cryovolcanic fluids requires that the plume consists of a mixture of materials whose sources experienced different degrees of aqueous processing, including primordial material trapped in ice that has not been in contact with liquid water. The observed mineral assemblage within the Monahans and Zag halites is also far from equilibrium. Cryovolcanoes on Ceres are a potential source of our halite, however the processes that form halite should also be operating within Europa. Dissolution of Monahans halite grains has revealed a remarkable variety of organics, which dominate the population of solid inclusions. Thermal alteration of this macromolecular carbon (measured by Raman spectroscopy) shows remarkable diversity. We have identified highly-condensed aromatics, diamond, carbonates and chloromethane. Light organic compounds like methane tend to be water soluble and require cold formation temperatures at high hydrogen fugacity - i.e. require water ice. Another indication that these halites have not been heated is that light organics readily volatilize or aromaticize into PAHs. We are currently analyzing the organics by Raman and C-XANES, and measuring the content and exploring the potential chirality of amino acids in the halite. Implications for Europa Plumes: Organic materials and structures erupted by a Europa cryovolcano should be similarly preserved within halite, and other salts, which will be a convenient form for capture and analysis, since halite will serve to encapsulate and protect the organics from spacecraft contamination. Also, being transparent at many wavelengths halite will permit analysis by spacecraft-mounted spectroscopic techniques. In addition, halite is readily dissolved, permitting further analysis of entrained organics.

  16. Cloud droplet activation of mixed organic-sulfate particles produced by the photooxidation of isoprene

    SciTech Connect

    King, Stephanie M.; Rosenoern, Thomas; Shilling, John E.; Chen, Qi; Wang, Zhe; Biskos, George; McKinney, Karena A.; Poschl, U.; Martin, Scot T.

    2010-04-27

    The cloud condensation nuclei (CCN) properties of mixed particles composed of sulfate and organic material condensed during the hydroxyl-radical-initiated photooxidation of isoprene were investigated in the continuous-flow Harvard Environmental Chamber. CCN activation curves were measured for organic particle mass loadings of 0.3 to 7.2 µg m-3, NOx concentrations from below detection limit up to 38 ppbv, particle diameters from 70 to 150 nm, and thermodenuder temperatures from 25 to 100 °C. At 25 °C, a two-component Köhler model, based on a sulfate seed internally mixed with a condensed secondary organic component and using a single set of physicochemical parameters for the organic component, was successful in describing the observed CCN activation curves. Even though the CCN properties did not change, the particle mass spectra showed that element ratios of the organic component varied across 0.53 < O:C < 0.59, 1.54 < H:C < 1.62, and 0.00 < N:C < 0.02 for isoprene-to-NO¬x concentration ratios covering 200:0 to 50:17 ppb, showing the presence of organonitrate species. We compared changes in the CCN activity following elevated temperatures in a thermodenuder relative to changes expected for effects of size alone and found that the CCN activity decreased relative to this standard, with the decrease being more pronounced in the absence of NOx. These findings suggest an important potential coupling between anthropogenic NOx pollution and CCN properties of atmospheric particles.

  17. Nature of Pre-Earthquake Phenomena and their Effects on Living Organisms

    PubMed Central

    Freund, Friedemann; Stolc, Viktor

    2013-01-01

    Simple Summary Earthquakes are invariably preceded by a period when stresses increase deep in the Earth. Animals appear to be able to sense impending seismic events. During build-up of stress, electronic charge carriers are activated deep below, called positive holes. Positive holes have unusual properties: they can travel fast and far into and through the surrounding rocks. As they flow, they generate ultralow frequency electromagnetic waves. When they arrive at the Earth surface, they can ionize the air. When they flow into water, they oxidize it to hydrogen peroxides. All these physical and chemical processes can have noticeable effects on animals. Abstract Earthquakes occur when tectonic stresses build up deep in the Earth before catastrophic rupture. During the build-up of stress, processes that occur in the crustal rocks lead to the activation of highly mobile electronic charge carriers. These charge carriers are able to flow out of the stressed rock volume into surrounding rocks. Such outflow constitutes an electric current, which generates electromagnetic (EM) signals. If the outflow occurs in bursts, it will lead to short EM pulses. If the outflow is continuous, the currents may fluctuate, generating EM emissions over a wide frequency range. Only ultralow and extremely low frequency (ULF/ELF) waves travel through rock and can reach the Earth surface. The outflowing charge carriers are (i) positively charged and (ii) highly oxidizing. When they arrive at the Earth surface from below, they build up microscopic electric fields, strong enough to field-ionize air molecules. As a result, the air above the epicentral region of an impending major earthquake often becomes laden with positive airborne ions. Medical research has long shown that positive airborne ions cause changes in stress hormone levels in animals and humans. In addition to the ULF/ELF emissions, positive airborne ions can cause unusual reactions among animals. When the charge carriers flow into water, they oxidize water to hydrogen peroxide. This, plus oxidation of organic compounds, can cause behavioral changes among aquatic animals. PMID:26487415

  18. Isotopic characterization as a screening tool in authentication of organic produce commercially available in western North America.

    PubMed

    Verenitch, Sergei; Mazumder, Asit

    2015-01-01

    The use of nitrogen stable isotopes to discriminate between conventionally and organically grown crops has been further developed in this study. Soil and irrigation water from different regions, as well as nitrogen fertilizers used, have been examined in detail to determine their effects on nitrogen isotope composition of spinach, lettuce, broccoli and tomatoes. Over 1000 samples of various types of organically and conventionally grown produce of known origin, along with the samples of nitrogen fertilizers used for their growth, have been analysed in order to assemble the datasets of crop/fertilizer correlations. The results demonstrate that the developed approach can be used as a valuable component in the verification of agricultural practices for more than 25 different types of commercially grown green produce, either organic or conventional. Over a period of two years, various organic and non-organic greens, from different stores in Seattle (WA, USA) and Victoria (BC, Canada), were collected and analysed using this methodology with the objective of determining any pattern of misrepresentation. PMID:25560176

  19. Demographic consequences of heavy metals and persistent organic pollutants in a vulnerable long-lived bird, the wandering albatross.

    PubMed

    Goutte, Aurélie; Barbraud, Christophe; Meillère, Alizée; Carravieri, Alice; Bustamante, Paco; Labadie, Pierre; Budzinski, Hélène; Delord, Karine; Cherel, Yves; Weimerskirch, Henri; Chastel, Olivier

    2014-07-22

    Seabirds are top predators of the marine environment that accumulate contaminants over a long life-span. Chronic exposure to pollutants is thought to compromise survival rate and long-term reproductive outputs in these long-lived organisms, thus inducing population decline. However, the demographic consequences of contaminant exposure are largely theoretical because of the dearth of long-term datasets. This study aims to test whether adult survival rate, return to the colony and long-term breeding performance were related to blood mercury (Hg), cadmium (Cd) and persistent organic pollutants (POPs), by using a capture-mark-recapture dataset on the vulnerable wandering albatross Diomedea exulans. We did not find evidence for any effect of contaminants on adult survival probability. However, blood Hg and POPs negatively impacted long-term breeding probability, hatching and fledging probabilities. The proximate mechanisms underlying these deleterious effects are likely multifaceted, through physiological perturbations and interactions with reproductive costs. Using matrix population models, we projected a demographic decline in response to an increase in Hg or POPs concentrations. This decline in population growth rate could be exacerbated by other anthropogenic perturbations, such as climate change, disease and fishery bycatch. This study gives a new dimension to the overall picture of environmental threats to wildlife populations. PMID:24920477

  20. Demographic consequences of heavy metals and persistent organic pollutants in a vulnerable long-lived bird, the wandering albatross

    PubMed Central

    Goutte, Aurélie; Barbraud, Christophe; Meillère, Alizée; Carravieri, Alice; Bustamante, Paco; Labadie, Pierre; Budzinski, Hélène; Delord, Karine; Cherel, Yves; Weimerskirch, Henri; Chastel, Olivier

    2014-01-01

    Seabirds are top predators of the marine environment that accumulate contaminants over a long life-span. Chronic exposure to pollutants is thought to compromise survival rate and long-term reproductive outputs in these long-lived organisms, thus inducing population decline. However, the demographic consequences of contaminant exposure are largely theoretical because of the dearth of long-term datasets. This study aims to test whether adult survival rate, return to the colony and long-term breeding performance were related to blood mercury (Hg), cadmium (Cd) and persistent organic pollutants (POPs), by using a capture–mark–recapture dataset on the vulnerable wandering albatross Diomedea exulans. We did not find evidence for any effect of contaminants on adult survival probability. However, blood Hg and POPs negatively impacted long-term breeding probability, hatching and fledging probabilities. The proximate mechanisms underlying these deleterious effects are likely multifaceted, through physiological perturbations and interactions with reproductive costs. Using matrix population models, we projected a demographic decline in response to an increase in Hg or POPs concentrations. This decline in population growth rate could be exacerbated by other anthropogenic perturbations, such as climate change, disease and fishery bycatch. This study gives a new dimension to the overall picture of environmental threats to wildlife populations. PMID:24920477

  1. Characterization of organic aerosol produced during pulverized coal combustion in a drop tube furnace

    NASA Astrophysics Data System (ADS)

    Wang, X.; Williams, B. J.; Wang, X.; Tang, Y.; Huang, Y.; Kong, L.; Yang, X.; Biswas, P.

    2013-02-01

    Controlled bench scale pulverized coal combustion studies were performed that demonstrate that inorganic particles play a critical role as carrier of organic species. Two commonly-used aerosol mass spectrometry techniques have been applied to characterize fine particle formation during coal combustion. It was found that the organic species in coal combustion aerosols have similar mass spectra as those from biomass combustion. Ambient measurements in Shanghai, China confirm the presence of these species in approximately 36~42% of the sampled particles. With the absence of major biomass sources in the Shanghai area, it is suggested that coal combustion may be the main source of these particles. This work indicates there is a significant potential for incorrect apportionment of coal combustion particles to biomass burning sources using widely adopted mass spectrometry techniques.

  2. Characterization of organic aerosol produced during pulverized coal combustion in a drop tube furnace

    NASA Astrophysics Data System (ADS)

    Wang, X.; Williams, B. J.; Wang, X.; Tang, Y.; Huang, Y.; Kong, L.; Yang, X.; Biswas, P.

    2013-11-01

    Controlled bench scale pulverized coal combustion studies were performed, demonstrating that inorganic particles play a critical role as carriers of organic species. Two commonly-used aerosol mass spectrometry techniques were applied to characterize fine particle formation during coal combustion. It was found that the organic species in coal combustion aerosols have mass spectra similar to those generated by biomass combustion. Ambient measurements in Shanghai, China confirm the presence of these species in approximately 29-38% of the sampled particles. With the absence of major biomass sources in the Shanghai area, it is suggested that coal combustion may be the main source of these particles. This work indicates there is a significant potential for incorrect apportionment of coal combustion particles to biomass burning sources using widely adopted mass spectrometry techniques.

  3. XANES Analysis of Organic Residues Produced from the UV Irradiation of Astrophysical Ice Analogs

    NASA Technical Reports Server (NTRS)

    Nuevo, M.; Milam, S N.; Sandford, S A.; De Gregorio, B T.; Cody, G D.; Kilcoyne, A L.

    2011-01-01

    Organic residues formed in the laboratory from the ultraviolet (UV) photo-irradiation or ion bombardment of astrophysical ice analogs have been extensively studied for the last 15 years with a broad suite of techniques, including infrared (IR) and UV spectroscopies, as well as mass spectrometry. Analyses of these materials show that they consist of complex mixtures of organic compounds stable at room temperature, mostly soluble, that have not been fully characterized. However, the hydrolysis products of these residues have been partly identified using chromatography techniques, which indicate that they contain molecular precursors of prebiotic interest such as amino acids, nitrile-bearing compounds, and amphiphilic compounds. In this study, we present the first X-ray absorption near-edge structure (XANES) spectroscopy measurements of three organic residues made from the UV irradiation of ices having different starting compositions. XANES spectra confirm the presence of different chemical functions in these residues, and indicate that they are rich in nitrogenand oxygen-bearing species. These data can be compared with XANES measurements of extraterrestrial materials. Finally, this study also shows how soft X rays can alter the chemical composition of samples.

  4. Cell Sheet-Based Tissue Engineering for Organizing Anisotropic Tissue Constructs Produced Using Microfabricated Thermoresponsive Substrates.

    PubMed

    Takahashi, Hironobu; Okano, Teruo

    2015-11-01

    In some native tissues, appropriate microstructures, including orientation of the cell/extracellular matrix, provide specific mechanical and biological functions. For example, skeletal muscle is made of oriented myofibers that is responsible for the mechanical function. Native artery and myocardial tissues are organized three-dimensionally by stacking sheet-like tissues of aligned cells. Therefore, to construct any kind of complex tissue, the microstructures of cells such as myotubes, smooth muscle cells, and cardiomyocytes also need to be organized three-dimensionally just as in the native tissues of the body. Cell sheet-based tissue engineering allows the production of scaffold-free engineered tissues through a layer-by-layer construction technique. Recently, using microfabricated thermoresponsive substrates, aligned cells are being harvested as single continuous cell sheets. The cell sheets act as anisotropic tissue units to build three-dimensional tissue constructs with the appropriate anisotropy. This cell sheet-based technology is straightforward and has the potential to engineer a wide variety of complex tissues. In addition, due to the scaffold-free cell-dense environment, the physical and biological cell-cell interactions of these cell sheet constructs exhibit unique cell behaviors. These advantages will provide important clues to enable the production of well-organized tissues that closely mimic the structure and function of native tissues, required for the future of tissue engineering. PMID:26033874

  5. Effect of Actin Organization on the Stiffness of Living Breast Cancer Cells Revealed by Peak-Force Modulation Atomic Force Microscopy.

    PubMed

    Calzado-Martín, Alicia; Encinar, Mario; Tamayo, Javier; Calleja, Montserrat; San Paulo, Alvaro

    2016-03-22

    We study the correlation between cytoskeleton organization and stiffness of three epithelial breast cancer cells lines with different degrees of malignancy: MCF-10A (healthy), MCF-7 (tumorigenic/noninvasive), and MDA-MB-231 (tumorigenic/invasive). Peak-force modulation atomic force microscopy is used for high-resolution topography and stiffness imaging of actin filaments within living cells. In healthy cells, local stiffness is maximum where filamentous actin is organized as well-aligned stress fibers, resulting in apparent Young's modulus values up to 1 order of magnitude larger than those in regions where these structures are not observed, but these organized actin fibers are barely observed in tumorigenic cells. We further investigate cytoskeleton conformation in the three cell lines by immunofluorescence confocal microscopy. The combination of both techniques determines that actin stress fibers are present at apical regions of healthy cells, while in tumorigenic cells they appear only at basal regions, where they cannot contribute to stiffness as probed by atomic force microscopy. These results substantiate that actin stress fibers provide a dominant contribution to stiffness in healthy cells, while the elasticity of tumorigenic cells appears not predominantly determined by these structures. We also discuss the effects of the high-frequency indentations inherent to peak-force atomic force microscopy for the identification of mechanical cancer biomarkers. Whereas conventional low loading rate indentations (1 Hz) result in slightly differentiated average stiffness for each cell line, in high-frequency measurements (250 Hz) healthy cells are clearly discernible from both tumorigenic cells with an enhanced stiffness ratio; however, the two cancerous cell lines produced indistinguishable results. PMID:26901115

  6. Indole trimers with antibacterial activity against Gram-positive organisms produced using combinatorial biocatalysis.

    PubMed

    McClay, Kevin; Mehboob, Shahila; Yu, Jerry; Santarsiero, Bernard D; Deng, Jiangping; Cook, James L; Jeong, Hyunyoung; Johnson, Michael E; Steffan, Robert J

    2015-12-01

    The I100V isoform of toluene-4-monooxygenase was used to catalyze the oxidative polymerization of anthranil and various indoles under mildly acidic conditions, favoring the production of trimers. Compounds produced in sufficient yield were purified and tested for their ability to inhibit the growth of B. anthracis, E. faecalis, L. monocytogenes, S. aureus, and in some cases, F. tularensis. 15 of the compounds displayed promising antibacterial activity (MIC < 5 µg/ml) against one or more of the strains tested, with the best MIC values being <0.8 µg/ml. All of these compounds had good selectivity, showing minimal cytotoxicity towards HepG2 cells. The structure was solved for six of the compounds that could be crystallized, revealing that minimally two classes of indole based trimers were produced. One compound class produced was a group of substituted derivatives of the natural product 2,2-bis(3-indolyl) indoxyl. The other group of compounds identified was classified as tryptanthrin-like compounds, all having multi-ring pendant groups attached at position 11 of tryptanthrin. One compound of particular interest, SAB-J85, had a structure that suggests that any compound, with a ring structure that can be activated by an oxygenase, might serve as a substrate for combinatorial biocatalysis. PMID:26112315

  7. New epistemological foundations for cultural psychology: from an atomistic to a self-organizing view of living systems.

    PubMed

    De Pascale, Adele

    2014-01-01

    An epistemological foundation for cultural psychology is essential to neuro- and behavioural sciences for the challenge psychological sciences must currently face: searching for an explanation of how a brain can become a mind and how individuals assign a sense to the world and their life. Biological systems are very likely determined by physical and chemical laws of spontaneous self-organization and endogenous constraints but, even if the major result of the Darwinian revolution is "the discovery that living species are their story", the modern synthesis of the evolution theory adopted only continuist and gradualist hypotheses. This nourished the analogy between the theory of natural selection and the theory of operant conditioning, thereby supporting empiricist associationism and the methodological positivism of behavioural and "classical" cognitive psychologists. Current scientific contributions provide evidence to the need for psychotherapy and psychopathology of a new epistemological approach in order to connect research stemming from animal models, up to the most abstract levels of personal meaning. The complex system oriented approach, here described, called "post-rationalism", shaped by a change initiated by evolutionary epistemology. The regulation of emotions initially develops within interpersonal relationships and evolves during both phylogeny and ontogeny, according to complex self-organization processes, leading to the acquisition of Self-organizing abilities and the construction of personal meaning. Endorsing the epistemological similarities of neo-Darwinism and behaviourism, and differentiating from this, the above mentioned approach, emphasises the fact that clinical and psycho-therapeutical practice must be founded on the laws of biological organisation: the ongoing activity of neurobiological systems, including the more abstract domains of thought and language. PMID:25292274

  8. The Overarching Influence of the Gut Microbiome on End-Organ Function: The Role of Live Probiotic Cultures

    PubMed Central

    Vitetta, Luis; Manuel, Rachel; Zhou, Joyce Yusi; Linnane, Anthony W.; Hall, Sean; Coulson, Samantha

    2014-01-01

    At the time of birth, humans experience an induced pro-inflammatory beneficial event. The mediators of this encouraged activity, is a fleet of bacteria that assault all mucosal surfaces as well as the skin. Thus initiating effects that eventually provide the infant with immune tissue maturation. These effects occur beneath an emergent immune system surveillance and antigenic tolerance capability radar. Over time, continuous and regulated interactions with environmental as well as commensal microbial, viral, and other antigens lead to an adapted and maintained symbiotic state of tolerance, especially in the gastrointestinal tract (GIT) the organ site of the largest microbial biomass. However, the perplexing and much debated surprise has been that all microbes need not be targeted for destruction. The advent of sophisticated genomic techniques has led to microbiome studies that have begun to clarify the critical and important biochemical activities that commensal bacteria provide to ensure continued GIT homeostasis. Until recently, the GIT and its associated micro-biometabolome was a neglected factor in chronic disease development and end organ function. A systematic underestimation has been to undervalue the contribution of a persistent GIT dysbiotic (a gut barrier associated abnormality) state. Dysbiosis provides a plausible clue as to the origin of systemic metabolic disorders encountered in clinical practice that may explain the epidemic of chronic diseases. Here we further build a hypothesis that posits the role that subtle adverse responses by the GIT microbiome may have in chronic diseases. Environmentally/nutritionally/and gut derived triggers can maintain microbiome perturbations that drive an abnormal overload of dysbiosis. Live probiotic cultures with specific metabolic properties may assist the GIT microbiota and reduce the local metabolic dysfunctions. As such the effect may translate to a useful clinical treatment approach for patients diagnosed with a metabolic disease for end organs such as the kidney and liver. A profile emerges that shows that bacteria are diverse, abundant, and ubiquitous and have significantly influenced the evolution of the eukaryotic cell. PMID:25244509

  9. Simple, effective protein extraction method and proteomics analysis from polyunsaturated fatty acids-producing micro-organisms.

    PubMed

    Ling, Xueping; Guo, Jing; Zheng, Chuqiang; Ye, Chiming; Lu, Yinghua; Pan, Xueshan; Chen, Zhengqi; Ng, I-Son

    2015-12-01

    Polyunsaturated fatty acids (PUFAs) are valuable ingredients in the food and pharmaceutical products due to their beneficial influence on human health. Most studies paid attention on the production of PUFAs from oleaginous micro-organisms but seldom on the comparative proteomics of cells. In the study, three methods (i.e., cold shock, acetone precipitation and ethanol precipitation) for lipid removal from crude protein extracts were applied in different PUFAs-producing micro-organisms. Among the selective strains, Schizochytrium was used as an oleaginous strain with high lipid of 60.3 (w/w%) in biomass. The Mortierella alpina and Cunninghamella echinulata were chosen as the low-lipid-content strains with 25.8 (w/w%) and 21.8 (w/w%) of lipid in biomass, respectively. The cold shock resulted as the most effective method for lipid removed, thus obtained higher protein amount for Schizochytrium. Moreover, from the comparative proteomics for the three PUFAs-producing strains, it showed more significant proteins of up or down-regulation were explored under cold shock treatment. Therefore, the essential proteins (i.e., polyunsaturated fatty acid synthase) and regulating proteins were observed. In conclusion, this study provides a valuable and practical approach for analysis of high PUFAs-producing strains at the proteomics level, and would further accelerate the understanding of the metabolic flux in oleaginous micro-organisms. PMID:26391510

  10. Plums (Prunus domestica L.) are a good source of yeasts producing organic acids of industrial interest from glycerol.

    PubMed

    García-Fraile, Paula; Silva, Luís R; Sánchez-Márquez, Salud; Velázquez, Encarna; Rivas, Raúl

    2013-08-15

    The production of organic acids from several yeasts isolated from mature plums on media containing glycerol as carbon source was analysed by HPLC-UV. The yeasts isolated were identified by sequencing the 5.8S internal transcribed spacer as Pichia fermentans, Wickerhamomyces anomalus and Candida oleophila. The organic acid profiles of these strains comprise acetic, citric, succinic and malic acids that qualitatively and quantitatively vary between different species as well as among strains from the same species. The production from glycerol of succinic, acetic, citric, malic and oxalic acids from C. oleophila and W. anomalus, and that of succinic, oxalic and acetic acids by P. fermentans is reported for the first time in this work, as is the production of oxalic acid from glycerol in yeasts. Our results also showed that mature fruits can be a good source of new yeasts able to metabolise glycerol, producing different organic acids with industrial and biotechnological interest. PMID:23561074

  11. Organic solids produced by electrical discharges in reducing atmospheres: Molecular analysis

    NASA Technical Reports Server (NTRS)

    Khare, B. N.; Sagan, C.; Zumberge, J. E.; Sklarew, D.; Nagy, B.

    1978-01-01

    The complex brown polymer produced on passage of an electrical discharge through a mixture of methane, ammonia, and water, is analyzed by pyrolytic GC/MS. Pyrolyzates include a wide range of alkanes, alkenes, aromatic hydrocarbons, aliphatic and aromatic nitriles, pyrroles, and pyridine. Similar pyrolyzates are obtained from polypeptides and polynucleotides with hydrocarbon moieties. This polymer is remarkably stable up to 950 C; its degradation products are candidate constituents of planetary aerosols in the outer solar system and the grains and gas in the interstellar medium.

  12. Silk fibers and silk-producing organs of Harpactea rubicunda (C. L. Koch 1838) (Araneae, Dysderidae).

    PubMed

    Hajer, Jaromír; Malý, Jan; Reháková, Dana

    2013-01-01

    Scanning electron microscopy and atomic force microscopy were used to study the silk spinning apparatus and silks of Harpactea rubicunda spiders. Three types of silk secretions that are produced by three kinds of silk spinning glands (ampullate, piriform, and pseudaciniform) and released through three types of spigots, were confirmed for both adult and juvenile spiders. Silk secretions for the construction of spider webs for shelter or retreat are produced by the pseudaciniform silk glands. Silk secretions that are released from spigots in the course of web construction are not processed by the legs during the subsequent process of hardening. Pairs of nanofibril bundles seemed to be part of the basic microarchitecture of the web silk fibers as revealed by AFM. These fiber bundles frequently not only overlap one another, but occasionally also interweave. This structural variability may strengthen the spider web. High-resolution AFM scans of individual nanofibrils show a distinctly segmented nanostructure. Each globular segment is ?30-40 nm long along the longitudinal axis of the fiber, and resembles a nanosegment of artificial fibroin described by Perez-Rigueiro et al. (2007). PMID:23034869

  13. A one-step, solvothermal reduction method for producing reduced graphene oxide dispersions in organic solvents.

    PubMed

    Dubin, Sergey; Gilje, Scott; Wang, Kan; Tung, Vincent C; Cha, Kitty; Hall, Anthony S; Farrar, Jabari; Varshneya, Rupal; Yang, Yang; Kaner, Richard B

    2010-07-27

    Refluxing graphene oxide (GO) in N-methyl-2-pyrrolidinone (NMP) results in deoxygenation and reduction to yield a stable colloidal dispersion. The solvothermal reduction is accompanied by a color change from light brown to black. Atomic force microscopy (AFM) and scanning electron microscopy (SEM) images of the product confirm the presence of single sheets of the solvothermally reduced graphene oxide (SRGO). X-ray photoelectron spectroscopy (XPS) of SRGO indicates a significant increase in intensity of the C=C bond character, while the oxygen content decreases markedly after the reduction is complete. X-ray diffraction analysis of SRGO shows a single broad peak at 26.24 degrees 2theta (3.4 A), confirming the presence of graphitic stacking of reduced sheets. SRGO sheets are redispersible in a variety of organic solvents, which may hold promise as an acceptor material for bulk heterojunction photovoltaic cells, or electromagnetic interference shielding applications. PMID:20586422

  14. Localization of pyruvate carboxylase in organic acid-producing Aspergillus strains.

    PubMed Central

    Bercovitz, A; Peleg, Y; Battat, E; Rokem, J S; Goldberg, I

    1990-01-01

    The localization of pyruvate carboxylase (cytosolic or mitochondrial) was studied in nine different Aspergillus species (14 strains). In some species (A. aculeatus, A. flavus, A. foetidus, A. nidulans, A. ochraceus, and A. sojae), the pyruvate carboxylase activity could be detected only in the cytosolic fraction of the cells. Pyruvate carboxylase has been found only in the mitochondrial fraction of two strains of Aspergillus wentii. In Aspergillus oryzae and in five strains of Aspergillus niger, pyruvate carboxylase activity was detected both in the mitochondrial fraction and in the cytosol. There was no quantitative or qualitative correlation between the activities of pyruvate carboxylase in the mitochondrial and cytosolic fractions of the cells and the ability of the various Aspergillus strains to accumulate different organic acids. PMID:2383004

  15. A One-Step, Solvothermal Reduction Method for Producing Reduced Graphene Oxide Dispersions in Organic Solvents

    PubMed Central

    Dubin, Sergey; Gilje, Scott; Wang, Kan; Tung, Vincent C.; Cha, Kitty; Hall, Anthony S.; Farrar, Jabari; Varshneya, Rupal; Yang, Yang; Kaner, Richard B.

    2014-01-01

    Refluxing graphene oxide (GO) in N-methyl-2-pyrrolidinone (NMP) results in deoxygenation and reduction to yield a stable colloidal dispersion. The solvothermal reduction is accompanied by a color change from light brown to black. Atomic force microscopy (AFM) and scanning electron microscopy (SEM) images of the product confirm the presence of single sheets of the solvothermally reduced graphene oxide (SRGO). X-ray photoelectron spectroscopy (XPS) of SRGO indicates a significant increase in intensity of the C=C bond character, while the oxygen content decreases markedly after the reduction is complete. X-ray diffraction analysis of SRGO shows a single broad peak at 26.24° 2? (3.4 Å), confirming the presence of graphitic stacking of reduced sheets. SRGO sheets are redispersible in a variety of organic solvents, which may hold promise as an acceptor material for bulk heterojunction photovoltaic cells, or electromagnetic interference shielding applications. PMID:20586422

  16. Localization of pyruvate carboxylase in organic acid-producing Aspergillus strains.

    PubMed

    Bercovitz, A; Peleg, Y; Battat, E; Rokem, J S; Goldberg, I

    1990-06-01

    The localization of pyruvate carboxylase (cytosolic or mitochondrial) was studied in nine different Aspergillus species (14 strains). In some species (A. aculeatus, A. flavus, A. foetidus, A. nidulans, A. ochraceus, and A. sojae), the pyruvate carboxylase activity could be detected only in the cytosolic fraction of the cells. Pyruvate carboxylase has been found only in the mitochondrial fraction of two strains of Aspergillus wentii. In Aspergillus oryzae and in five strains of Aspergillus niger, pyruvate carboxylase activity was detected both in the mitochondrial fraction and in the cytosol. There was no quantitative or qualitative correlation between the activities of pyruvate carboxylase in the mitochondrial and cytosolic fractions of the cells and the ability of the various Aspergillus strains to accumulate different organic acids. PMID:2383004

  17. Leaching of a silicate and carbonate copper ore with heterotrophic fungi and bacteria, producing organic acids.

    PubMed

    Kiel, H; Schwartz, W

    1980-01-01

    Leaching of metals with carbon-heterotrophic microorganisms and organic acids as active agents has been performed with Timna copper ore containing 1.1% copper as carbonates and silicate and with some other metal oxides. Aspergillus niger surface cultures on a 14% sucrose fermentation medium yeilded 87.3% of total copper from 10% suspension within 2 weeks of leaching. On sulfite liquor as an industrial waste product A. niger solubilized 73.8% Cu within 4 weeks. In percolators with 14% sucrose medium up to 1780 ppm copper were found in solution. In leaching experiments with a sea water medium containing 7% sucrose only 684 ppm Cu were soluble. Leaching with lactobacilli containing whey yielded 83.4% of the total copper in 4 weeks. PMID:7222743

  18. Single-reactor process for producing liquid-phase organic compounds from biomass

    SciTech Connect

    Dumesic, James A.; Simonetti, Dante A.; Kunkes, Edward L.

    2015-12-08

    Disclosed is a method for preparing liquid fuel and chemical intermediates from biomass-derived oxygenated hydrocarbons. The method includes the steps of reacting in a single reactor an aqueous solution of a biomass-derived, water-soluble oxygenated hydrocarbon reactant, in the presence of a catalyst comprising a metal selected from the group consisting of Cr, Mn, Fe, Co, Ni, Cu, Mo, Tc, Ru, Rh, Pd, Ag, W, Re, Os, Ir, Pt, and Au, at a temperature, and a pressure, and for a time sufficient to yield a self-separating, three-phase product stream comprising a vapor phase, an organic phase containing linear and/or cyclic mono-oxygenated hydrocarbons, and an aqueous phase.

  19. Single-reactor process for producing liquid-phase organic compounds from biomass

    DOEpatents

    Dumesic, James A. (Verona, WI); Simonetti, Dante A. (Middleton, WI); Kunkes, Edward L. (Madison, WI)

    2011-12-13

    Disclosed is a method for preparing liquid fuel and chemical intermediates from biomass-derived oxygenated hydrocarbons. The method includes the steps of reacting in a single reactor an aqueous solution of a biomass-derived, water-soluble oxygenated hydrocarbon reactant, in the presence of a catalyst comprising a metal selected from the group consisting of Cr, Mn, Fe, Co, Ni, Cu, Mo, Tc, Ru, Rh, Pd, Ag, W, Re, Os, Ir, Pt, and Au, at a temperature, and a pressure, and for a time sufficient to yield a self-separating, three-phase product stream comprising a vapor phase, an organic phase containing linear and/or cyclic mono-oxygenated hydrocarbons, and an aqueous phase.

  20. Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation.

    PubMed

    Chan, Clara S; Fakra, Sirine C; Emerson, David; Fleming, Emily J; Edwards, Katrina J

    2011-04-01

    Neutrophilic Fe-oxidizing bacteria (FeOB) are often identified by their distinctive morphologies, such as the extracellular twisted ribbon-like stalks formed by Gallionella ferruginea or Mariprofundus ferrooxydans. Similar filaments preserved in silica are often identified as FeOB fossils in rocks. Although it is assumed that twisted iron stalks are indicative of FeOB, the stalk's metabolic role has not been established. To this end, we studied the marine FeOB M. ferrooxydans by light, X-ray and electron microscopy. Using time-lapse light microscopy, we observed cells excreting stalks during growth (averaging 2.2  μm  h(-1)). Scanning transmission X-ray microscopy and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy show that stalks are Fe(III)-rich, whereas cells are low in Fe. Transmission electron microscopy reveals that stalks are composed of several fibrils, which contain few-nanometer-sized iron oxyhydroxide crystals. Lepidocrocite crystals that nucleated on the fibril surface are much larger (∼100  nm), suggesting that mineral growth within fibrils is retarded, relative to sites surrounding fibrils. C and N 1s NEXAFS spectroscopy and fluorescence probing show that stalks primarily contain carboxyl-rich polysaccharides. On the basis of these results, we suggest a physiological model for Fe oxidation in which cells excrete oxidized Fe bound to organic polymers. These organic molecules retard mineral growth, preventing cell encrustation. This model describes an essential role for stalk formation in FeOB growth. We suggest that stalk-like morphologies observed in modern and ancient samples may be correlated confidently with the Fe-oxidizing metabolism as a robust biosignature. PMID:21107443

  1. Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

    SciTech Connect

    Chan, Clara S; Fakra, Sirine C; Emerson, David; Fleming, Emily J; Edwards, Katrina J

    2011-07-01

    Neutrophilic Fe-oxidizing bacteria (FeOB) are often identified by their distinctive morphologies, such as the extracellular twisted ribbon-like stalks formed by Gallionella ferruginea or Mariprofundus ferrooxydans. Similar filaments preserved in silica are often identified as FeOB fossils in rocks. Although it is assumed that twisted iron stalks are indicative of FeOB, the stalk's metabolic role has not been established. To this end, we studied the marine FeOB M. ferrooxydans by light, X-ray and electron microscopy. Using time-lapse light microscopy, we observed cells excreting stalks during growth (averaging 2.2 {micro}m h(-1)). Scanning transmission X-ray microscopy and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy show that stalks are Fe(III)-rich, whereas cells are low in Fe. Transmission electron microscopy reveals that stalks are composed of several fibrils, which contain few-nanometer-sized iron oxyhydroxide crystals. Lepidocrocite crystals that nucleated on the fibril surface are much larger ({approx}100 nm), suggesting that mineral growth within fibrils is retarded, relative to sites surrounding fibrils. C and N 1s NEXAFS spectroscopy and fluorescence probing show that stalks primarily contain carboxyl-rich polysaccharides. On the basis of these results, we suggest a physiological model for Fe oxidation in which cells excrete oxidized Fe bound to organic polymers. These organic molecules retard mineral growth, preventing cell encrustation. This model describes an essential role for stalk formation in FeOB growth. We suggest that stalk-like morphologies observed in modern and ancient samples may be correlated confidently with the Fe-oxidizing metabolism as a robust biosignature.

  2. Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

    PubMed Central

    Chan, Clara S; Fakra, Sirine C; Emerson, David; Fleming, Emily J; Edwards, Katrina J

    2011-01-01

    Neutrophilic Fe-oxidizing bacteria (FeOB) are often identified by their distinctive morphologies, such as the extracellular twisted ribbon-like stalks formed by Gallionella ferruginea or Mariprofundus ferrooxydans. Similar filaments preserved in silica are often identified as FeOB fossils in rocks. Although it is assumed that twisted iron stalks are indicative of FeOB, the stalk's metabolic role has not been established. To this end, we studied the marine FeOB M. ferrooxydans by light, X-ray and electron microscopy. Using time-lapse light microscopy, we observed cells excreting stalks during growth (averaging 2.2??m?h?1). Scanning transmission X-ray microscopy and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy show that stalks are Fe(III)-rich, whereas cells are low in Fe. Transmission electron microscopy reveals that stalks are composed of several fibrils, which contain few-nanometer-sized iron oxyhydroxide crystals. Lepidocrocite crystals that nucleated on the fibril surface are much larger (?100?nm), suggesting that mineral growth within fibrils is retarded, relative to sites surrounding fibrils. C and N 1s NEXAFS spectroscopy and fluorescence probing show that stalks primarily contain carboxyl-rich polysaccharides. On the basis of these results, we suggest a physiological model for Fe oxidation in which cells excrete oxidized Fe bound to organic polymers. These organic molecules retard mineral growth, preventing cell encrustation. This model describes an essential role for stalk formation in FeOB growth. We suggest that stalk-like morphologies observed in modern and ancient samples may be correlated confidently with the Fe-oxidizing metabolism as a robust biosignature. PMID:21107443

  3. Secondary Organic Aerosol Produced from Aqueous Reactions of Phenols in Fog Drops and Deliquesced Particles

    NASA Astrophysics Data System (ADS)

    Smith, J.; Anastasio, C.

    2014-12-01

    The formation and evolution of secondary organic aerosol (SOA) in atmospheric condensed phases (i.e., aqueous SOA) can proceed rapidly, but relatively little is known of the important aqueous SOA precursors or their reaction pathways. In our work we are studying the aqueous SOA formed from reactions of phenols (phenol, guaiacol, and syringol), benzene-diols (catechol, resorcinol, and hydroquinone), and phenolic carbonyls (e.g., vanillin and syringaldehyde). These species are potentially important aqueous SOA precursors because they are released in large quantities from biomass burning, have high Henry's Law constants (KH = 103 -109 M-1 atm-1) and are rapidly oxidized. To evaluate the importance of aqueous reactions of phenols as a source of SOA, we first quantified the kinetics and SOA mass yields for 11 phenols reacting via direct photodegradation, hydroxyl radical (•OH), and with an excited organic triplet state (3C*). In the second step, which is the focus of this work, we use these laboratory results in a simple model of fog chemistry using conditions during a previously reported heavy biomass burning event in Bakersfield, CA. Our calculations indicate that under aqueous aerosol conditions (i.e., a liquid water content of 100 ?g m-3) the rate of aqueous SOA production (RSOA(aq)) from phenols is similar to the rate in the gas phase. In contrast, under fog/cloud conditions the aqueous RSOA from phenols is 10 times higher than the rate in the gas phase. In both of these cases aqueous RSOA is dominated by the oxidation of phenols by 3C*, followed by direct photodegradation of phenolic carbonyls, and then •OH oxidation. Our results suggest that aqueous oxidation of phenols is a significant source of SOA during fog events and also during times when deliquesced aerosols are present.

  4. When organ donation from living donors serves as the main source of organ procurement: a critical examination of the ethical and legal challenges to Turkey's recent efforts to overcome organ shortage.

    PubMed

    Sert, G; Guven, T; Gorkey, S

    2013-01-01

    Despite the fact that Turkey has implemented a number of legislative and regulatory efforts to increase cadaveric donations, live donors still serve as the main source of organ procurement in this country. To address this problem, Turkey's regulatory authorities have sought to increase the number of brain death declarations. A new regulation issued in 2012 repeats the criteria for brain death that were first issued in 1993. This paper argues that these efforts are far from adequate owing to a number of complicated, ethical, and legal challenges that must be addressed to increase cadaveric organ donations. After examining these factors, which are completely neglected in current policies, we conclude that Turkey needs a realistic ethically justifiable organ procurement policy that must be supported by a framework of patient rights to implement the concept of patient autonomy and respect for human dignity in health care services as the primary goal. PMID:23953519

  5. Fatty acid profile differs between organic and conventionally produced cow milk independent of season or milking time.

    PubMed

    Schwendel, B H; Morel, P C H; Wester, T J; Tavendale, M H; Deadman, C; Fong, B; Shadbolt, N M; Thatcher, A; Otter, D E

    2015-03-01

    Differing amounts of fresh forage and concentrates fed, and level of input contributes to the differences reported in fatty acid (FA) composition of organic and conventionally produced cow milk. In many previous studies designed to investigate this phenomenon, comparisons were made between grazed organic cows and housed conventional cows. In the present study, we have investigated differences between organic and conventional milk produced using year-round pasture grazing, as practiced in New Zealand. The FA composition was determined in milk sampled at morning and evening milking in both spring and autumn. Samples were taken from 45 cows from the Massey University organic herd and compared with 50 cows from the corresponding conventional herd grazed and managed similarly at the same location. Forty-three out of 51 analyzed FA were influenced by season, whereas 28 were different between production systems. In addition, one-half were also different due to time of milking. Levels of linoleic acid and α-linolenic acid were higher in organic milk, whereas conjugated linoleic acid (CLA) and vaccenic acid were higher in conventional milk. The first 3 FA (linoleic acid, α-linolenic acid, and CLA) were more abundant in milk harvested during autumn, and the CLA concentration was also significantly influenced by time of milking. Our results confirm reports that the FA profile is affected by season and time of milking, and we also showed an effect due to the production system, when both sets of cows were kept continuously on pasture, even after taking milking time and seasonal effect into account. PMID:25557897

  6. In-Situ Cold Temperature XRD of Calcium Phosphate Produced From Organic Phosphoric Acid

    NASA Astrophysics Data System (ADS)

    Yusoff, M. S. Meor; Paulus, Wilfred; Muslimin, Masliana

    2010-01-01

    In this study, we synthesized calcium phosphate from an organic phosphoric acid, diethylhexyl phosphoric acid (DEHPA) and calcium hydroxide solution. The reaction involves a sol-gel process with a whitish gel formed. In-situ XRD analysis was then performed on the sample from room temperature to -140° C. At room the XRD diffractogram shows the sample as an amorphous material and as the temperature was further lowered sharp peaks begins to form indicating that the material had becomes crystalline. The peaks were identified to be that calcium hydrogen phosphate (Ca(H2PO4)2) and this indicates that there is no hydroxyl group removal during the cooling process. The relative crystallinity values obtained for the different cooling temperatures show a slow exponential increase on the initial cooling of 0 to -100° C and at further cooling temperatures resulted fast and linear process. Also unlike the in-situ XRD analysis performs at high temperature no phase transformation occurred at this low temperature.

  7. A novel multi-phase bioreactor for fermentations to produce organic acids from dairy wastes

    SciTech Connect

    Yang, S.T.; Zhu, H.; Li, Y.; Silva, E.M.

    1993-12-31

    A novel, fibrous bed bioreactor is developed for multi-phase fermentation processes. The microbial cells are immobilized in a spiral-wound, fibrous matrix packed in the bioreactor. This innovative, structured packing design allows good contact between two different moving phases (e.g., gas-liquid or liquid-solid) and has many advantages over conventional immobilized cell bioreactors. Because the reactor bed is not completely filled with the solid matrix, the bioreactor can be operated for a long period without developing problems such as clogging and high pressure drop usually associated with conventional packed bed and membrane bioreactors. This novel bioreactor was studied for its use in several organic acid fermentations. Production of propionate, acetate, and lactate from whey permeate was studied. In all cases studied, use of the fibrous bioreactor resulted in superior reactor performance-indicated by a more than tenfold increase in productivity, reduction or elimination of the requirement for nutrient supplementation to whey permeate, and resistance to contamination-as compared to conventional batch fermentation processes. Also, the reactor maintained high productivity throughout long-term continuous operation. No contamination, degeneration, or clogging problems were experienced during a 10-month period of continuous operation. This new bioreactor is thus suitable for industrial uses to improve fermentation processes which currently use conventional bioreactors.

  8. Straw biochar hastens organic matter degradation and produces nutrient-rich compost.

    PubMed

    Zhang, Jining; Chen, Guifa; Sun, Huifeng; Zhou, Sheng; Zou, Guoyan

    2016-01-01

    Biochar derived from wheat straw was added to pig manure in amounts equivalent to 5%, 10%, or 15% (w/w, wet weight). The ratios of NH4(+)/NO3(-) and of UV light absorption at a wavelength of 254nm (SUV254) and dissolved organic carbon (DOC) indicated that compost with 10-15% biochar became more mature and more humified within 42days of composting, and the content of DOC and the concentration of NH4(+) in such compost decreased by 37.5-62.0% and 4.0-20.9%, respectively, compared to the corresponding levels in the control. Addition of biochar lowered the pH and increased electrical conductivity by 7.0-37.5% compared to the control and also increased the concentrations of water-soluble nutrients including PO4(3-) (5.6-7.4%), K(+) (14.2-58.6%), and Ca(2+) (0-12.5%). It is therefore recommended that straw biochar be added to pig manure at 10-15% by weight. PMID:26600456

  9. High-Resolution Mass Spectrometric Analysis of Secondary Organic Aerosol Produced by Ozonation of Limonene

    SciTech Connect

    Walser, Maggie L.; Dessiaterik, Yury; Laskin, Julia; Laskin, Alexander; Nizkorodov, Serguei

    2008-02-08

    Secondary organic aerosol (SOA) particles formed from the ozone-initiated oxidation of limonene are characterized by high-resolution electrospray ionization mass spectrometry in both the positive and negative ion modes. The mass spectra reveal a large number of both monomeric (m/z < 300) and oligomeric (m/z > 300) products of oxidation. A combination of high resolving power (m/Δm ~60,000) and Kendrick mass defect analysis makes it possible to unambiguously determine the composition for hundreds of individual compounds in SOA samples. Van Krevelen analysis shows that the SOA compounds are heavily oxidized, with average O:C ratios of 0.43 and 0.50 determined from the positive and negative ion mode spectra, respectively. An extended reaction mechanism for the formation of the first generation SOA molecular components is proposed. The mechanism includes known isomerization and addition reactions of the carbonyl oxide intermediates generated during the ozonation of limonene, and numerous isomerization pathways for alkoxy radicals resulting from the decomposition of unstable carbonyl oxides. The isomerization reactions yield numerous products with a progressively increasing number of alcohol and carbonyl groups, whereas C-C bond scission reactions in alkoxy radicals shorten the carbon chain. Together these reactions yield a large number of isomeric products with broadly distributed masses. A qualitative agreement is found between the number and degree of oxidation of the predicted and measured reaction products in the monomer range.

  10. Drosophila Embryos as Model to Assess Cellular and Developmental Toxicity of Multi-Walled Carbon Nanotubes (MWCNT) in Living Organisms

    PubMed Central

    Liu, Boyin; Campo, Eva M.; Bossing, Torsten

    2014-01-01

    Different toxicity tests for carbon nanotubes (CNT) have been developed to assess their impact on human health and on aquatic and terrestrial animal and plant life. We present a new model, the fruit fly Drosophila embryo offering the opportunity for rapid, inexpensive and detailed analysis of CNTs toxicity during embryonic development. We show that injected DiI labelled multi-walled carbon nanotubes (MWCNTs) become incorporated into cells in early Drosophila embryos, allowing the study of the consequences of cellular uptake of CNTs on cell communication, tissue and organ formation in living embryos. Fluorescently labelled subcellular structures showed that MWCNTs remained cytoplasmic and were excluded from the nucleus. Analysis of developing ectodermal and neural stem cells in MWCNTs injected embryos revealed normal division patterns and differentiation capacity. However, an increase in cell death of ectodermal but not of neural stem cells was observed, indicating stem cell-specific vulnerability to MWCNT exposure. The ease of CNT embryo injections, the possibility of detailed morphological and genomic analysis and the low costs make Drosophila embryos a system of choice to assess potential developmental and cellular effects of CNTs and test their use in future CNT based new therapies including drug delivery. PMID:24558411

  11. A Perspective on Studying G-Protein-Coupled Receptor Signaling with Resonance Energy Transfer Biosensors in Living Organisms.

    PubMed

    van Unen, Jakobus; Woolard, Jeanette; Rinken, Ago; Hoffmann, Carsten; Hill, Stephen J; Goedhart, Joachim; Bruchas, Michael R; Bouvier, Michel; Adjobo-Hermans, Merel J W

    2015-09-01

    The last frontier for a complete understanding of G-protein-coupled receptor (GPCR) biology is to be able to assess GPCR activity, interactions, and signaling in vivo, in real time within biologically intact systems. This includes the ability to detect GPCR activity, trafficking, dimerization, protein-protein interactions, second messenger production, and downstream signaling events with high spatial resolution and fast kinetic readouts. Resonance energy transfer (RET)-based biosensors allow for all of these possibilities in vitro and in cell-based assays, but moving RET into intact animals has proven difficult. Here, we provide perspectives on the optimization of biosensor design, of signal detection in living organisms, and the multidisciplinary development of in vitro and cell-based assays that more appropriately reflect the physiologic situation. In short, further development of RET-based probes, optical microscopy techniques, and mouse genome editing hold great potential over the next decade to bring real-time in vivo GPCR imaging to the forefront of pharmacology. PMID:25972446

  12. Protective long-term antibody memory by antigen-driven and T help-dependent differentiation of long-lived memory B cells to short-lived plasma cells independent of secondary lymphoid organs

    PubMed Central

    Ochsenbein, Adrian F.; Pinschewer, Daniel D.; Sierro, Sophie; Horvath, Edit; Hengartner, Hans; Zinkernagel, Rolf M.

    2000-01-01

    Memory is a hallmark of immunity. Memory carried by antibodies is largely responsible for protection against reinfection with most known acutely lethal infectious agents and is the basis for most clinically successful vaccines. However, the nature of long-term B cell and antibody memory is still unclear. B cell memory was studied here after infection of mice with the rabies-like cytopathic vesicular stomatitis virus, the noncytopathic lymphocytic choriomeningitis virus (Armstrong and WE), and after immunization with various inert viral antigens inducing naive B cells to differentiate either to plasma cells or memory B cells in germinal centers of secondary lymphoid organs. The results show that in contrast to very low background levels against internal viral antigens, no significant neutralizing antibody memory was observed in the absence of antigen and suggest that memory B cells (i) are long-lived in the absence of antigen, nondividing, and relatively resistant to irradiation, and (ii) must be stimulated by antigen to differentiate to short-lived antibody-secreting plasma cells, a process that is also efficient in the bone marrow and always depends on radiosensitive, specific T help. Therefore, for vaccines to induce long-term protective antibody titers, they need to repeatedly provide, or continuously maintain, antigen in minimal quantities over a prolonged time period in secondary lymphoid organs or the bone marrow for sufficient numbers of long-lived memory B cells to mature to short-lived plasma cells. PMID:11069289

  13. Method for producing fuel gas from organic material, capable of self-sustaining operation

    SciTech Connect

    Fetters, W.A.; Chittick, D.E.

    1985-07-23

    This patent discloses a form of substantially uniform-sized pellets, to produce a tar-free fuel gas. Prior to initiating operation, the lower end of the reaction chamber is filled with a charge of charcoal, forming a charcoal bed. A portion of the charcoal bed is then ignited, typically near the top, with air from the atmosphere being drawn substantially uniformly down through the reaction chamber by a pump on the outlet line leading from the reaction chamber, creating a thin pyrolysis zone near the top of the charcoal bed. The substantially uniform-size fuel pellets are added to the top of the charcoal bed, and are pyrolized as they move down through the pyrolysis zone. Since the fuel pellets are substantially uniform in size, and since the air-flow down through the chamber is substantially uniform, the temperature profile over the cross-sectional area of the pyrolysis zone is substantially uniform, and a homogeneous pyrolysis zone is created, without hot spots or channels. Such an arrangement results in self-regulating, self-sustaining operation over a relatively wide demand range, with rapid start-up and response characteristics. Air may also be directed into the reaction chamber through an inlet beneath the charcoal bed, which results in the reaction of the devolatilized charcoal to form additional fuel and an ash residue. Thus, the production and consumption of the charcoal within the apparatus may be exactly balanced.

  14. Living systems are tonically inhibited, autonomous optimizers, and disinhibition coupled to variability generation is their major organizing principle: inhibitory command-control at levels of membrane, genome, metabolism, brain, and society.

    PubMed

    Roberts, E

    1991-03-01

    It is proposed that the major organizing principle in living systems is disinhibition coupled to variability generation. Facile traverse of adaptive functional ranges is made possible by activities of inhibitory (attenuating and/or time-delaying) influences. These maintain barriers to physicochemical perturbations, so that interactions between the external environment and living systems produce transient local changes (signals) that are transduced by a variety of devices at hand to release activities within them. Coupling exists between the driving force (forcing function) and the generation of variability (information-processing capacity) among subunits of particular systems, i.e., there is expansible capacity for processing information in relation to demand. Metaphorically, metabolically generated energy is used to wind the biological springs. Hierarchical nesting of inhibitory command-control is discussed at levels of membrane, metabolism, genomic expression, brain function, and internalization of societal prohibitions (conscience). PMID:1780033

  15. Process for producing organic products containing silicon, hydrogen, nitrogen, and carbon by the direct reaction between elemental silicon and organic amines and products formed thereby

    DOEpatents

    Pugar, E.A.; Morgan, P.E.D.

    1988-04-04

    A process is disclosed for producing, at a low temperature, a high purity organic reaction product consisting essentially of silicon, hydrogen, nitrogen, and carbon. The process comprises reacting together a particulate elemental high purity silicon with a high purity reactive amine reactant in a liquid state at a temperature of from about O/degree/C up to about 300/degree/C. A high purity silicon carbide/silicon nitride ceramic product can be formed from this intermediate product, if desired, by heating the intermediate product at a temperature of from about 1200-1700/degree/C for a period from about 15 minutes up to about 2 hours or the organic reaction product may be employed in other chemical uses.

  16. Process for producing organic products containing silicon, hydrogen, nitrogen, and carbon by the direct reaction between elemental silicon and organic amines

    DOEpatents

    Pugar, Eloise A.; Morgan, Peter E. D.

    1990-04-03

    A process is disclosed for producing, at a low temperature, a high purity organic reaction product consisting essentially of silicon, hydrogen, nitrogen, and carbon. The process comprises reacting together a particulate elemental high purity silicon with a high purity reactive amine reactant in a liquid state at a temperature of from about 0.degree. C. up to about 300.degree. C. A high purity silicon carbide/silicon nitride ceramic product can be formed from this intermediate product, if desired, by heating the intermediate product at a temperature of from about 1200.degree.-1700.degree. C. for a period from about 15 minutes up to about 2 hours or the organic reaction product may be employed in other chemical uses.

  17. Charcoal produced by prescribed fire increases dissolved organic carbon and soil microbial activity

    NASA Astrophysics Data System (ADS)

    Poon, Cheryl; Jenkins, Meaghan; Bell, Tina; Adams, Mark

    2014-05-01

    In Australian forests fire is an important driver of carbon (C) storage. When biomass C is combusted it is transformed into vegetation residue (charcoal) and deposited in varying amounts and forms onto soil surfaces. The C content of charcoal is high but is largely in a chemically stable form of C, which is highly resistance to microbial decomposition. We conducted two laboratory incubations to examine the influence of charcoal on soil microbial activity as indicated by microbial respiration. Seven sites were chosen in mixed species eucalypt forest in Victoria, Australia. Soil was sampled prior to burning to minimise the effects of heating or addition of charcoal during the prescribed burn. Charcoal samples were collected from each site after the burn, homogenised and divided into two size fractions. Prior to incubation, soils were amended with the two size fractions (<1 and 1-4.75 mm) and at two rates of amount (2.5 and 5% by soil dry weight). Charcoal-amended soils were incubated in the laboratory for 86 d, microbial respiration was measured nine times at day 1, 3, 8, 15, 23, 30, 45, 59 and 86 d. We found that addition of charcoal resulted in faster rates of microbial respiration compared to unamended soil. Fastest rates of microbial respiration in all four treatments were measured 1 d after addition of charcoal (up to 12 times greater than unamended soil). From 3 to 8 d, respiration rates in all four treatments decreased and only treatments with greater charcoal addition (5%) remained significantly faster than unamended soil. From 15 d to 86 d, all treatments had respiration rates similar to unamended soil. Overall, adding greater amount of charcoal (5%) resulted in a larger cumulative amount of CO2 released over the incubation period when compared to unamended soil. The second laboratory incubation focused on the initial changes in soil nutrient and microbial respiration after addition of charcoal over a 72 h period. Charcoal (<2 mm) was added at rate of 5% to soil with differing moisture content (55 and 70% water holding capacity). Microbial respiration was measured continuously and dissolved organic C (DOC), nitrogen (DON), extractable phosphorus (P), and microbial C, N and P were measured at four time points during the 72 h incubation. Our data showed that the initial spike in microbial respiration was highly correlated to the amount of DOC in the soil. Soil moisture did not significantly change the microbial response or soil nutrient availability after addition of charcoal. This study outlines one of the processes of carbon cycling that occurs immediately after fire. Charcoal deposition resulting from prescribed burning provides a transitory yet important source of C for soil microbes and stimulates microbial activity.

  18. Structure and organization of plasmid genes required to produce the translation inhibitor microcin C7.

    PubMed Central

    González-Pastor, J E; San Millán, J L; Castilla, M A; Moreno, F

    1995-01-01

    The translation inhibitor microcin C7 (MccC7) is a linear heptapeptide whose N terminus has been replaced by an N-formyl group and whose C terminus has been replaced by the phosphodiester of 5'-adenylic acid and n-aminopropanol (J. I. Guijarro, J. E. González-Pastor, F. Baleux, J. L. San Millán, M. A. Castilla, M. Rico, F. Moreno, and M. Delepierre, J. Biol. Chem. 270:23520-23532, 1995). MccC7 production and immunity determinants lie on a 6.2-kb region of the Escherichia coli plasmid pMccC7. This region was entirely sequenced. It contains six open reading frames, which were shown to be true genes by different complementary approaches. Five genes, mccABCDE, which are transcribed in the same direction, are required to produce mature extracellular microcin. The sixth gene, mccF, adjacent to mccE, is transcribed in the opposite direction and encodes specific self-immunity. Genes mccA to -E constitute an operon transcribed from a promoter (mccp) located upstream of mccA. mccA is 21 nucleotides long and encodes the unmodified heptapeptide (J. E. González-Pastor, J. L. San Millán, and F. Moreno, Nature [London] 369:281, 1994). A comparison of predicted gene polypeptide products with those included in databases shows that an 81-amino-acid stretch of MccB is strikingly homologous to fragments of the same length of proteins ThiF and ChlN from E. coli, HesA from Anabaena sp. strain PCC7120, and UBA1, the ubiquitin-activating enzyme from different eukaryotic species. MccC displays several hydrophobic domains, suggesting a transmembrane location. The carboxyl end of MccE displays 41.2% identity with RimL, a protein required to acetylate the ribosome protein L12 from E. coli. In the absence of the other mcc genes, mccA impairs the growth of host cells, suggesting that unmodified MccA has antibiotic activity. A model for MccC7 biosynthesis, export, and immunity is proposed. PMID:8522520

  19. Structure and organization of plasmid genes required to produce the translation inhibitor microcin C7.

    PubMed

    González-Pastor, J E; San Millán, J L; Castilla, M A; Moreno, F

    1995-12-01

    The translation inhibitor microcin C7 (MccC7) is a linear heptapeptide whose N terminus has been replaced by an N-formyl group and whose C terminus has been replaced by the phosphodiester of 5'-adenylic acid and n-aminopropanol (J. I. Guijarro, J. E. González-Pastor, F. Baleux, J. L. San Millán, M. A. Castilla, M. Rico, F. Moreno, and M. Delepierre, J. Biol. Chem. 270:23520-23532, 1995). MccC7 production and immunity determinants lie on a 6.2-kb region of the Escherichia coli plasmid pMccC7. This region was entirely sequenced. It contains six open reading frames, which were shown to be true genes by different complementary approaches. Five genes, mccABCDE, which are transcribed in the same direction, are required to produce mature extracellular microcin. The sixth gene, mccF, adjacent to mccE, is transcribed in the opposite direction and encodes specific self-immunity. Genes mccA to -E constitute an operon transcribed from a promoter (mccp) located upstream of mccA. mccA is 21 nucleotides long and encodes the unmodified heptapeptide (J. E. González-Pastor, J. L. San Millán, and F. Moreno, Nature [London] 369:281, 1994). A comparison of predicted gene polypeptide products with those included in databases shows that an 81-amino-acid stretch of MccB is strikingly homologous to fragments of the same length of proteins ThiF and ChlN from E. coli, HesA from Anabaena sp. strain PCC7120, and UBA1, the ubiquitin-activating enzyme from different eukaryotic species. MccC displays several hydrophobic domains, suggesting a transmembrane location. The carboxyl end of MccE displays 41.2% identity with RimL, a protein required to acetylate the ribosome protein L12 from E. coli. In the absence of the other mcc genes, mccA impairs the growth of host cells, suggesting that unmodified MccA has antibiotic activity. A model for MccC7 biosynthesis, export, and immunity is proposed. PMID:8522520

  20. Composition of Secondary Organic Aerosols Produced by Photo-Oxidation of Biomass Burning Emissions in a Smog Chamber

    NASA Astrophysics Data System (ADS)

    Desyaterik, Y.; Sullivan, A.; Hennigan, C. J.; Robinson, A. L.; Collett, J. L.

    2009-12-01

    Knowledge of the chemical composition of atmospheric organic aerosols (OA) is essential for accurate representation of OA in air quality and climate models. Both the sources of OA and their properties and effects remain poorly understood. In particular, we still know relatively little about the atmospheric formation of secondary organic aerosols (SOA). There is growing interest in the impact of biomass burning emissions on air quality, human health, and radiative forcing. Through a series of experiments, we are working to quantify changes in the chemical composition of wood smoke particles as a result of photochemical aging under well-controlled laboratory conditions. One specific objective of this study is to identify markers for biomass burning SOA and test whether these markers can be used in atmospheric samples to quantify SOA formation from aging of biomass burning emissions. We analyzed SOA generated in a smog chamber by photooxidation of smoke produced by burning oak wood. In order to initiate photochemistry, the chamber was irradiated with UV light. Aqueous extracts of collected aerosol samples were analyzed with Electrospray Ionization Time-of-Flight Mass Spectrometry. The high mass accuracy of these measurements reduces ambiguity in the assignment of elemental compositions for observed ions. Analysis has shown that primary oak smoke aerosol includes products of the thermal decomposition of cellulose (levoglucosan, cyclotene etc.) and lignin (guaiacol and syringol derivatives, mostly aldehydes and alcohols). After 2 hours of aging at typical summertime hydroxyl radical concentrations, the aerosol mass increased 2.5 fold due to the production of secondary organic aerosol. Mass spectra of the secondary organic aerosol formed are dominated by organic nitrates (nitrophenol, nitrocresol, nitrocatechol, and nitroguaiacol) and aromatic acids (benzoic acid, mono and di-hydroxybenzoic acid). Both nitrates and acids most likely are formed due to oxidation of the lignin decomposition products (guaiacol and syringol derivatives) by reaction with OH and NO2. This research highlights the dynamic nature of fire emissions and atmospheric organic aerosols in general.

  1. An experimental study of the organic molecules produced in cometary and interstellar ice analogs by thermal formaldehyde reactions

    NASA Technical Reports Server (NTRS)

    Schutte, W. A.; Allamandola, L. J.; Sandford, S. A.

    1993-01-01

    Results of an experimental study tracing thermal formaldehyde reactions in astrophysically relevant ices in dense molecular clouds are reported. The formaldehyde chemistry during warm-up of ices containing H2CO and one or more of the molecules H2O, CH3OH, CO, O2, and NH3 were monitored using IR spectroscopy. Conversion of H2CO into residues was observed to start at about 40 K for NH3:H2CO ices and at about 80 K in H2O-rich ices. A total of five different organic products of these reactions were distinguished: POM and reaction products of H2CO and H2O, CH3OH, and NH3. Given the measured reaction paths and efficiencies, it is estimated that on the order of 1 percent of the organics found in the coma of Comet P/Halley could have been produced by thermal formaldehyde reactions taking place in the nucleus.

  2. Mycosporine-like amino acids in planktonic organisms living under different UV exposure conditions in Patagonian lakes

    PubMed Central

    TARTAROTTI, BARBARA; BAFFICO, GUSTAVO; TEMPORETTI, PEDRO; ZAGARESE, HORACIO E.

    2011-01-01

    Mycosporine-like amino acids (MAAs) were studied in zooplankton from 13 Argentinian lakes covering a broad range in altitude, maximum depth and physico-chemical properties of the water. Four to nine different MAAs (predominantly porphyra-334 and shinorine) were found in the copepods Boeckella gibbosa, B. gracilipes, B. meteoris and Parabroteas sarsi, and in the ciliate Stentor amethystinus, while MAAs were undetectable in the cladoceran Daphnia middendorffiana. Among the different copepods, maximum MAA concentrations accounted for 0.25–1.31% of the dry weight, and contents were generally about three to seven times (up to 43 times) higher in the animals living in the clearest lakes compared to those occurring in low-UV systems. This variability in the content of MAAs was related to the lake altitude (r2 = 0.71), and the fraction of the water column to which 1% of the surface UV radiation at 320 nm penetrated (r2 = 0.57). Our data therefore underscore the role of MAAs as sunscreens to decrease the potential negative effects of solar radiation, but they also indicate that other environmental factors besides UV transparency play a role in determining MAA concentrations. One lake was selected to obtain additional information on the qualitative composition of MAAs in seston of <100 ?m between two sampling sites and over a 2 month study period (austral summer). Six different MAAs were detected in the samples, with porphyra-334 and palythine being predominant. In the copepods collected simultaneously, there was low variation in MAA concentrations between the two sites and over time. Thus, our results suggest that under similar UV exposure conditions MAA contents of planktonic organisms show low temporal variation. PMID:21258622

  3. Quick, Easy Method to Show Living Soil Organisms to High School or Beginning-Level College Students

    ERIC Educational Resources Information Center

    Loynachan, Thomas E.

    2006-01-01

    The living component of soil is difficult for students to learn about and understand because students have difficulty relating to things they cannot see (beyond sight, beyond mind). Line drawings from textbooks help explain conceptual relationships but do little to stimulate an active interest in the living component of soil. Alternatively,…

  4. Quick, Easy Method to Show Living Soil Organisms to High School or Beginning-Level College Students

    ERIC Educational Resources Information Center

    Loynachan, Thomas E.

    2006-01-01

    The living component of soil is difficult for students to learn about and understand because students have difficulty relating to things they cannot see (beyond sight, beyond mind). Line drawings from textbooks help explain conceptual relationships but do little to stimulate an active interest in the living component of soil. Alternatively,…

  5. A general strategy for developing cell-permeable photo-modulatable organic fluorescent probes for live-cell super-resolution imaging

    PubMed Central

    Pan, Deng; Hu, Zhe; Qiu, Fengwu; Huang, Zhen-Li; Ma, Yilong; Wang, Yina; Qin, Lingsong; Zhang, Zhihong; Zeng, Shaoqun; Zhang, Yu-Hui

    2014-01-01

    Single-molecule localization microscopy (SMLM) achieves super-resolution imaging beyond the diffraction limit but critically relies on the use of photo-modulatable fluorescent probes. Here we report a general strategy for constructing cell-permeable photo-modulatable organic fluorescent probes for live-cell SMLM by exploiting the remarkable cytosolic delivery ability of a cell-penetrating peptide (rR)3R2. We develop photo-modulatable organic fluorescent probes consisting of a (rR)3R2 peptide coupled to a cell-impermeable organic fluorophore and a recognition unit. Our results indicate that these organic probes are not only cell permeable but can also specifically and directly label endogenous targeted proteins. Using the probes, we obtain super-resolution images of lysosomes and endogenous F-actin under physiological conditions. We resolve the dynamics of F-actin with 10?s temporal resolution in live cells and discern fine F-actin structures with diameters of ~80?nm. These results open up new avenues in the design of fluorescent probes for live-cell super-resolution imaging. PMID:25410769

  6. Isotopic analysis of dissolved organic carbon in produced water brines by wet chemical oxidation and cavity ring-down spectroscopy

    NASA Astrophysics Data System (ADS)

    Thomas, Randal; Conaway, Christopher; Saad, Nabil; Kharaka, Yousif

    2013-04-01

    Identification of fluid migration and escape from intentionally altered subsurface geologic systems, such as in hydraulic fracturing, enhanced oil recovery, and carbon sequestration activities, is an important issue for environmental regulators based on the traction that the "fracking" process is gathering across the United States. Given diverse injected fluid compositions and the potential for toxic or regulated compounds to be released, one of the most important steps in the process is accurately identifying evidence of injected fluid escape during and after injection processes. An important tool in identifying differences between the natural groundwater and injected fluid is the isotopic composition of dissolved constituents including inorganic components such as Sr and carbon isotopes of the dissolved organic compounds. Since biological processes in the mesothermal subsurface can rapidly alter the organic composition of a fluid, stable carbon isotopes of the dissolved organic compounds (DOC) are an effective means to identify differences in the origin of two fluids, especially when coupled with inorganic compound analyses. The burgeoning field of cavity ring-down spectroscopy (CRDS) for isotopic analysis presents an opportunity to obtain rapid, reliable and cost-effective isotopic measurements of DOC in potentially affected groundwater for the identification of leakage or the improvement of hydrogeochemical pathway models. Here we adapt the use of the novel hyphenated TOC-CRDS carbon isotope analyzer for the analysis of DOC in produced water by wet oxidation and describe the methods to evaluate performance and obtain useful information at higher salinities. Our methods are applied to a specific field example in a CO2-enhanced EOR field in Cranfield, Mississippi (USA) as a means to demonstrate the ability to distinguish natural and injected DOC using the stable isotopic composition of the dissolved organic carbon when employing the novel TOC-CRDS instrumentation set up.

  7. Evoecotoxicology: Environmental Changes and Life Features Development during the Evolutionary Process—the Record of the Past at Developmental Stages of Living Organisms

    PubMed Central

    Herkovits, Jorge

    2006-01-01

    For most of evolutionary history, scientific understanding of the environment and life forms is extremely limited. In this commentary I discuss the hypothesis that ontogenetic features of living organisms can be considered biomarkers of coevolution between organisms and physicochemical agents during Earth’s history. I provide a new vision of evolution based on correlations between metabolic features and stage-dependent susceptibility of organisms to physicochemical agents with well-known environmental signatures. Thus, developmental features potentially reflect environmental changes during evolution. From this perspective, early multicellular life forms would have flourished in the anoxic Earth more than 2 billion years ago, which is at least 1.2 billion years in advance of available fossil evidence. The remarkable transition to aerobic metabolism in gastrula-stage embryos potentially reflects evolution toward tridermic organisms by 2 billion years ago. Noteworthy changes in embryonic resistance to physicochemical agents at different developmental stages that can be observed in living organisms potentially reflect the influence of environmental stress conditions during different periods of evolutionary history. Evoecotoxicology, as a multidisciplinary and transdisciplinary approach, can enhance our understanding of evolution, including the phylogenetic significance of differences in susceptibility/resistance to physicochemical agents in different organisms. PMID:16882515

  8. Evoecotoxicology: environmental changes and life features development during the evolutionary process-the record of the past at developmental stages of living organisms.

    PubMed

    Herkovits, Jorge

    2006-08-01

    For most of evolutionary history, scientific understanding of the environment and life forms is extremely limited. In this commentary I discuss the hypothesis that ontogenetic features of living organisms can be considered biomarkers of coevolution between organisms and physicochemical agents during Earth's history. I provide a new vision of evolution based on correlations between metabolic features and stage-dependent susceptibility of organisms to physicochemical agents with well-known environmental signatures. Thus, developmental features potentially reflect environmental changes during evolution. From this perspective, early multicellular life forms would have flourished in the anoxic Earth more than 2 billion years ago, which is at least 1.2 billion years in advance of available fossil evidence. The remarkable transition to aerobic metabolism in gastrula-stage embryos potentially reflects evolution toward tridermic organisms by 2 billion years ago. Noteworthy changes in embryonic resistance to physicochemical agents at different developmental stages that can be observed in living organisms potentially reflect the influence of environmental stress conditions during different periods of evolutionary history. Evoecotoxicology, as a multidisciplinary and transdisciplinary approach, can enhance our understanding of evolution, including the phylogenetic significance of differences in susceptibility/resistance to physicochemical agents in different organisms. PMID:16882515

  9. Organic solids produced from simple C/H/O/N ices by charged particles - Applications to the outer solar system

    SciTech Connect

    Khare, B.N.; Thompson, W.R.; Chyba, C.F.; Sagan, C.; Arakawa, E.T.

    1989-01-01

    The effects of charged particle irradiation by cold plasma discharge on surfaces of H2O:CH4 clathrate with a 200:1 ratio and on ices composed of H2O and C2H6 or C2H2 are examined. The molecules studies are found in Comet Halley and are plausible constituents in icy outer solar system objects. The IR transmission spectra of four ice-tholin residues obtained in the laboratory are compared with spectra produced by irradiation of gases and ices containing simple hydrocarbons. The similarities between CH4 clathrate residue and Halley organic grains, and the surface transport or atmospheric replenishment activity on Triton and Pluto are discussed. 56 refs.

  10. Role of free-living and particle-attached bacteria in the recycling and export of organic material in the Hudson Bay system

    NASA Astrophysics Data System (ADS)

    Lapoussière, Amandine; Michel, Christine; Starr, Michel; Gosselin, Michel; Poulin, Michel

    2011-12-01

    This study investigates, for the first time, the role of free-living and particle-attached bacteria in the sinking export and recycling of organic matter in the Hudson Bay system (i.e. Hudson Bay, Hudson Strait, and Foxe Basin), a large subarctic estuarine system. During the late summers of 2005 and 2006, the abundance, cell size, nucleic acid content, and sinking velocity of free-living and particle-attached bacteria were studied simultaneously, using a new approach that combines the settling column method with flow cytometry. Biomass, production, and respiration of both types of bacteria were estimated using published models. Our results showed that particle-attached bacteria were, on average, twice as large as and contained 1.3 times more nucleic acid than free-living bacteria. Particle-attached bacteria also sank faster than predicted by Stoke's Law, with estimated sinking velocities comparable to those of chlorophyll a biomass and protist cells. Each individual cell of the particle-attached bacterial community had high carbon demand, but their low abundances (< 3% of total bacterial numbers) resulted in low total carbon demand. Therefore, the main contributors to POC recycling were found to be free-living bacteria using the non-sinking dissolved organic material, which is released from particles due to the hydrolytic activity of particle-attached bacteria.

  11. Oxidative potential of secondary organic aerosols produced from photooxidation of different hydrocarbons using outdoor chamber under ambient sunlight

    NASA Astrophysics Data System (ADS)

    Jiang, Huanhuan; Jang, Myoseon; Sabo-Attwood, Tara; Robinson, Sarah E.

    2016-04-01

    The oxidative potential of various secondary organic aerosols (SOA) was measured using dithiothreitol (DTT) assay to understand how organic aerosols react with cellular materials. SOA was produced via the photooxidation of four different hydrocarbons (toluene, 1,3,5-trimethylbenzene, isoprene and α-pinene) in the presence of NOx using a large outdoor photochemical smog chamber. The DTT consumption rate was normalized by the aerosol mass, which is expressed as DTTmass. Toluene SOA and isoprene SOA yielded higher DTTmass than 1,3,5-trimethylbenzene SOA or α-pinene SOA. In order to discover the correlation between the molecular structure and oxidative potential, the DTT responses of selected model compounds were also measured. Among them, conjugated aldehydes, quinones, and H2O2 showed considerable DTT response. To investigate the correlation between DTT response and cell responses in vitro, the expression of biological markers, i.e. IL-6, IL-8, and HMOX-1 were studied using small airway epithelial cells. Higher cellular expression of IL-8 was observed with toluene SOA exposure compared to 1,3,5-trimethylbenzene SOA exposure, which aligned with the results from DTT assay. Our study also suggests that within the urban atmosphere, the contribution of toluene SOA and isoprene SOA to the oxidative potential of ambient SOA will be more significant than that of α-pinene SOA.

  12. Vaginal Fibroblastic Cells from Women with Pelvic Organ Prolapse Produce Matrices with Increased Stiffness and Collagen Content

    PubMed Central

    Ruiz-Zapata, Alejandra M.; Kerkhof, Manon H.; Ghazanfari, Samaneh; Zandieh-Doulabi, Behrouz; Stoop, Reinout; Smit, Theo H.; Helder, Marco N.

    2016-01-01

    Pelvic organ prolapse (POP) is characterised by the weakening of the pelvic floor support tissues, and often by subsequent prolapse of the bladder outside the body, i.e. cystocele. The bladder is kept in place by the anterior vaginal wall which consists of a dense extracellular matrix rich in collagen content that is maintained and remodelled by fibroblastic cells, i.e. fibroblasts and myofibroblasts. Since altered matrix production influences tissue quality, and myofibroblasts are involved in normal and pathological soft tissue repair processes, we evaluated matrix production of cells derived from pre- and post-menopausal POP and non-POP control anterior vaginal wall tissues. Results showed that cells from postmenopausal POP women deposited matrices with high percentage of collagen fibres with less anisotropic orientation and increased stiffness than those produced by controls. There was a transient increase in myofibroblastic phenotype that was lost after the peak of tissue remodelling. In conclusion, affected fibroblasts from postmenopausal prolapsed tissues produced altered matrices in vitro compared to controls. Such aberrant altered matrix production does not appear to be a consequence of abnormal phenotypical changes towards the myofibroblastic lineage. PMID:26965792

  13. Organic samples produced by ion bombardment of ices for the EXPOSE-R2 mission on the International Space Station

    NASA Astrophysics Data System (ADS)

    Baratta, G. A.; Chaput, D.; Cottin, H.; Fernandez Cascales, L.; Palumbo, M. E.; Strazzulla, G.

    2015-12-01

    We describe the preparation and characterization (by UV-vis-IR spectroscopy) of a set of organic samples, stable at room temperature and above, that are part of the experiment "Photochemistry on the Space Station (PSS)" planned to be enclosed in the EXPOSE-R2 mission, which will be conducted on the EXPOSE-R facility. The core facility is placed outside the International Space Station (ISS) on the Universal Platform D (URM-D platform) of the Russian module Zvezda. The organic materials are prepared in the Catania laboratory after 200 keV He+ irradiation of icy mixtures, namely N2:CH4:CO deposited at 16 K on MgF2 windows furnished by the European Space Agency. It is widely accepted that such a kind of materials produced by energetic processing are representative of organic material in some astrophysical environments as comets. Once expelled from comets these materials are exposed to solar radiation during their interplanetary journey before they eventually land on Earth and other planetary objects where they might give a contribution to the chemical and pre-biotical evolution. In particular our residues contain different chemical groups, including triple CN bonds that are considered relevant to pre-biotic chemistry. Therefore the samples will be exposed, for several months, to the solar ultraviolet photons that are a major source of energy to initiate chemical evolution in the solar system. This will allow analysis of their destruction or modification and evaluation of their lifetime in the interplanetary medium. The samples have three different thicknesses that will allow estimation of the depth profile of destruction. This experiment overcomes the limits of ground tests which do not reproduce exactly the space parameters.

  14. Oral Amoxicillin-Clavulanic Acid Treatment in Urinary Tract Infections Caused by Extended-Spectrum Beta-Lactamase–Producing Organisms

    PubMed Central

    Beytur, Ali; Yakupogullari, Yusuf; Oguz, Fatih; Otlu, Baris; Kaysadu, Halim

    2014-01-01

    Background: Extended-spectrum β-lactamases (ESBLs) are increasing problems. The involvement of ESBL-producing organisms is associated with higher rates of carbapenem usage in urinary tract infections (UTIs). Though some strains are susceptible to amoxicillin-clavulanic acid (AMC) in vitro, there is very less data about the consequences of AMC usage for such infections. Objectives: The purpose of this study was to evaluate the clinical and microbiological outcomes of AMC treatment in UTIs caused by AMC-susceptible ESBL-producing organisms. Patients and Methods: A retrospective cohort study was conducted in a tertiary care hospital. Forty-six out of 652 patients (F/M ratio: 32/14; mean age: 43.9 years) with ESBL-positive UTIs were eligible for this study. These patients had cystitis (n = 23), vesicoureteral reflux (n = 7), hyperactive bladder (n = 6), and prostatitis (n = 10). Data was collected via chart review and was statistically analyzed. Results: AMC-susceptible ESBL-producing Escherichia coli, Klebsiella pneumoniae and K. oxytoca were identified as the causative agents in 31, 14, and 1 patients, respectively. Thirty-nine (84.7%) out of 46 patients were successfully treated with oral AMC. Additionally, 2 (4.3%) patients’ urine cultures turned to be negative, though their clinical complaints and leukocyturia had continued. In the remaining 5 (10.8%) patients, no positive clinical and microbiological response was obtained. Increased minimum inhibitory concentration levels of AMC (from 4 to > 256 µg/mL) were detected in these patients and the treatment failures were attributed to this developing resistance. We found that therapeutic failure was significantly more frequent in Klebsiella spp. than in E. coli (33.3% vs 6.5%, P = 0.029). Furthermore, no treatment failure was observed in pathogens with minimum inhibitory concentrations (MICs) ≤ 2 mg/mL, and the high AMC MIC (8 mg/mL) was associated with resistance development and therapeutic failure (71.4% vs. 5.1%, P = 0.0001). Conclusions: Our results suggested that amoxicillin-clavulanic acid may be a good oral antimicrobial which can be used for treatment of ESBL-positive UTIs, if the causative agent is susceptible to this antibiotic. However, some strains may develop resistance during therapy, especially in those exhibiting high AMC MICs. PMID:25763134

  15. WRF/Chem study of dry and wet deposition of trifluoroacetic acid produced from the atmospheric degradation of a few short-lived HFCs

    NASA Astrophysics Data System (ADS)

    Kazil, J.; McKeen, S. A.; Kim, S.; Ahmadov, R.; Grell, G. A.; Talukdar, R. K.; Ravishankara, A. R.

    2011-12-01

    HFC-134a (1,1,1,2-tetrafluoroethane) is the prevalent (used in >80% passenger cars and commercial vehicles worldwide) refrigerant in automobile air conditioning units (MACs). With an atmospheric lifetime of ~14 years and a global warming potential (GWP) of 1430 on a 100-year time horizon, HFC-134a does not meet current and expected requirements for MAC refrigerants in many parts of the world. Therefore, substitutes with lower GWP are being sought. One of the simplest way to achieve lower GWP is to use chemicals with shorter atmospheric lifetimes. In this work, we investigate the dry and wet deposition and the rainwater concentration of trifluoroacetic acid (TFA) produced by the atmospheric oxidation of 2,3,3,3-tetrafluoropropene (TFP) and 1,2,3,3,3-pentafluoropropene (PFP). The WRF/Chem model was used to calculate dry and wet TFA deposition over the contiguous USA during the May-September 2006 period that would result from replacing HFC-134a in MACs with a 1:1 molar ratio mixture of 2,3,3,3-tetrafluoropropene (TFP) and 1,2,3,3,3-pentafluoropropene (PFP). The simulation is evaluated by comparing observations of precipitation and sulfate wet deposition at stations of the National Atmospheric Deposition Program (NADP). Simulated precipitation and sulfate wet deposition correlate well with the observations, but exhibit a positive bias for precipitation and a negative bias for sulfate wet deposition. Atmospheric lifetimes of TFP and PFP against oxidation by the hydroxyl radical OH, a prognostic species in WRF/Chem, are ~5 and ~4 days in the simulation, respectively. The model setup allows the attribution of dry and wet TFA deposition to individual source regions (California, Houston, Chicago, and the remaining contiguous USA in this work). TFA deposition is highest in the eastern USA because of numerous large sources and high precipitation in the region. West of the Continental Divide, TFA deposition is significantly lower, and its origin is dominated by emissions from California. Dry deposition of TFA contributes on average with 26% to the total. Rainwater concentrations of TFA, averaged over the five-month simulation period remain at all locations below a threshold of 0.1 mg L-1; this value is considered safe for the aquatic ecosystem. On shorter timescales, TFA rainwater concentrations can reach significantly higher values at locations with very low rainfall rates and comparably low overall TFA deposition, mainly in California and Nevada. While the TFA rainwater concentrations expected from a replacement of HFC-134a with the shorter-lived TFP and PFP appear environmentally safe at most locations, the role of high TFA rainwater concentrations at locations with very low rainfall rates, and washdown of dry deposited TFA require future investigation.

  16. Quality of soluble organic C, N, and P produced by different types and species of litter: root litter versus leaf litter

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In forested ecosystems, the quality of dissolved organic matter (DOM) produced by freshly senesced litter may differ by litter type and species, and these differences may influence the amount of DOM that is respired versus that which may either contribute to soil organic matter accumulation or be le...

  17. Epidemiologic and Genotypic Review of Carbapenemase-Producing Organisms in British Columbia, Canada, between 2008 and 2014.

    PubMed

    Sekirov, Inna; Croxen, Matthew A; Ng, Corrinne; Azana, Robert; Chang, Yin; Mataseje, Laura; Boyd, David; Mangat, Chand; Mack, Benjamin; Tadros, Manal; Brodkin, Elizabeth; Kibsey, Pamela; Stefanovic, Aleksandra; Champagne, Sylvie; Mulvey, Michael R; Hoang, Linda M N

    2016-02-01

    Carbapenemase-producing organisms (CPOs) are a serious emerging problem for health care facilities worldwide. Owing to their resistance to most antimicrobial therapies, CPOs are difficult to treat and pose a challenge for infection prevention and control. Since 2010, lab-based surveillance for CPOs and PCR-based testing were implemented in British Columbia (BC), Canada. A review of CPOs in BC from 2008 to March 2014 was done to characterize the resistance mechanisms and possible clonal strain transmission and to compare pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and plasmid restriction fragment length polymorphism (RFLP) as molecular typing tools. During this study period, a total of 177 CPO cases were identified. Patient demographics and travel history were reviewed, and a descriptive analysis was carried out. PFGE profiles, MLST, and plasmid RFLP analysis for a subset of Escherichia coli, Klebsiella pneumoniae, and Enterobacter species isolates were obtained and analyzed. Our findings demonstrate that CPOs have been increasing in number in BC over time, from 1 isolate/year retrospectively identified in 2008 and 2009 to 82 isolates in 2013 and 30 isolates in the first quarter of 2014. Overall, K. pneumoniae isolates lack clonality, although some seemingly related clusters have been found. Plasmid analysis showed evidence of the spread of plasmids carrying carbapenemase-encoding genes between the examined isolates. Analysis of Enterobacter cloacae isolates revealed a more clonal nature of these CPOs in BC. The presence of related clusters provides evidence of interpatient organism transmission both within and between institutions. Although in our study, NDM-harboring E. cloacae isolates appeared to spread clonally, the spread of carbapenem resistance in K. pneumoniae seems to be plasmid mediated. PMID:26607987

  18. Light Absorption by Secondary Organic Aerosol Produced from Aqueous Reaction of Phenols with an Organic Excited Triplet State and Hydroxyl Radical

    NASA Astrophysics Data System (ADS)

    Smith, J.; Yu, L.; George, K.; Ruthenburg, T. C.; Dillner, A. M.; Zhang, Q.; Anastasio, C.

    2012-12-01

    Although reactions in atmospheric condensed phases can form and transform secondary organic aerosol (SOA), these reactions are not well represented in many air quality models. Previous experiments have focused on hydroxyl radical-mediated oxidation of low molecular weight precursors such as gyloxal and methylglyoxal. In our work we are examining aqueous SOA formed from phenols, which are emitted from biomass burning and formed from the oxidation of anthropogenic aromatics such as benzene and toluene. In this work we examine aqueous SOA production from oxidation of three phenols (phenol, guaiacol, syringol) and three benzene-diols (catechol, resorcinol, 1,4-hydroquinone) by hydroxyl radical (OH) and the triplet excited state of 3,4-dimethoxybenzaldehyde (DMB). Our focus is on light absorption by the reaction products, which we characterized by measuring UV-Vis spectra and calculating mass absorption coefficients. To understand the elemental and molecular composition of the SOA, we also analyzed the samples with high resolution mass spectrometry and infrared spectroscopy. Our results indicate that aqueous oxidation of phenols and benzene-diols via OH and triplet excited states efficiently produce SOA that is highly absorbing in the UV-A wavelengths, consists of both small and large molecular weight products, and is highly oxidized.

  19. Organic synthesis: the art and science of replicating the molecules of living nature and creating others like them in the laboratory

    PubMed Central

    Nicolaou, K. C.

    2014-01-01

    Synthetic organic chemists have the power to replicate some of the most intriguing molecules of living nature in the laboratory and apply their developed synthetic strategies and technologies to construct variations of them. Such molecules facilitate biology and medicine, as they often find uses as biological tools and drug candidates for clinical development. In addition, by employing sophisticated catalytic reactions and appropriately designed synthetic processes, they can synthesize not only the molecules of nature and their analogues, but also myriad other organic molecules for potential applications in many areas of science, technology and everyday life. After a short historical introduction, this article focuses on recent advances in the field of organic synthesis with demonstrative examples of total synthesis of complex bioactive molecules, natural or designed, from the author’s laboratories, and their impact on chemistry, biology and medicine. PMID:24611027

  20. Parameterization of thermal properties of aging secondary organic aerosol produced by photo-oxidation of selected terpene mixtures.

    PubMed

    Emanuelsson, Eva U; Mentel, Thomas F; Watne, Agot K; Spindler, Christian; Bohn, Birger; Brauers, Theo; Dorn, Hans-Peter; Hallquist, Asa M; Häseler, Rolf; Kiendler-Scharr, Astrid; Müller, Klaus-Peter; Pleijel, Håkan; Rohrer, Franz; Rubach, Florian; Schlosser, Eric; Tillmann, Ralf; Hallquist, Mattias

    2014-06-01

    Formation and evolution of secondary organic aerosols (SOA) from biogenic VOCs influences the Earth's radiative balance. We have examined the photo-oxidation and aging of boreal terpene mixtures in the SAPHIR simulation chamber. Changes in thermal properties and chemical composition, deduced from mass spectrometric measurements, were providing information on the aging of biogenic SOA produced under ambient solar conditions. Effects of precursor mixture, concentration, and photochemical oxidation levels (OH exposure) were evaluated. OH exposure was found to be the major driver in the long term photochemical transformations, i.e., reaction times of several hours up to days, of SOA and its thermal properties, whereas the initial concentrations and terpenoid mixtures had only minor influence. The volatility distributions were parametrized using a sigmoidal function to determine TVFR0.5 (the temperature yielding a 50% particle volume fraction remaining) and the steepness of the volatility distribution. TVFR0.5 increased by 0.3±0.1% (ca. 1 K), while the steepness increased by 0.9±0.3% per hour of 1×10(6) cm(-3) OH exposure. Thus, aging reduces volatility and increases homogeneity of the vapor pressure distribution, presumably because highly volatile fractions become increasingly susceptible to gas phase oxidation, while less volatile fractions are less reactive with gas phase OH. PMID:24810838

  1. Organic and inorganic fractions of diesel exhaust particles produce changes in mucin profile of mouse trachea explants.

    PubMed

    Seriani, Robson; Junqueira, Mara S; Toledo, Alessandra C; Corrêa, Aristides T; Silva, Luiz F F; Martins, Milton A; Saldiva, Paulo H N; Mauad, Thais; Macchione, Mariângela

    2015-01-01

    Diesel exhaust particles (DEP) contain organic and inorganic elements that produce damage to the respiratory epithelium. The aim of this study was to determine the mucus profile of tracheal explants exposed to either crude diesel exhaust particles (DEP) or DEP treated with nitric acid (DEP/NA), with hexane (DEP/HEX), or with methanol (DEP/MET) at concentrations of 50 and 100 μg/ml for 30 and 60 min. Tracheal explants were subjected to morphometric analyses to study acidic (AB+), neutral (PAS+), and mixed (AB+/PAS+) mucus production and vacuolization (V). Incubation with 50 μg/ml crude DEP resulted in a rise in acid mucus production, an increase in vacuolization at 30 min, and reduction in neutral mucus at 30 and 60 min. Tracheas exposed to DEP/MET at 50 μg/ml for 30 or 60 min resulted in a significant decrease in neutral mucus production and an elevation in acid mucus production. DEP/HEX increased vacuolization at both 50 and 100 μg/ml at 30 and 60 min of exposure. Treatment with 50 μg/ml for 30 or 60 min significantly elevated mixed mucus levels. These results suggest that DEP appear to be more toxic when administered in combination with HEX or MET. DEP/MET modified the mucus profile of the epithelium, while DEP/HEX altered mucus extrusion, and these responses might be due to bioavailability of individual elements in DEP fractions. PMID:25674825

  2. Characterization of oligomers from methylglyoxal under dark conditions: a pathway to produce secondary organic aerosol through cloud processing during nighttime

    NASA Astrophysics Data System (ADS)

    Yasmeen, F.; Sauret, N.; Gal, J.-F.; Maria, P.-C.; Massi, L.; Maenhaut, W.; Claeys, M.

    2010-04-01

    Aqueous-phase oligomer formation from methylglyoxal, a major atmospheric photooxidation product, has been investigated in a simulated cloud matrix under dark conditions. The aim of this study was to explore an additional pathway producing secondary organic aerosol (SOA) through cloud processes without participation of photochemistry during nighttime. Indeed, atmospheric models still underestimate SOA formation, as field measurements have revealed more SOA than predicted. Soluble oligomers (n = 1-8) formed in the course of acid-catalyzed aldol condensation and acid-catalyzed hydration followed by acetal formation have been detected and characterized by positive and negative ion electrospray ionization mass spectrometry. Aldol condensation proved to be a favorable mechanism under simulated cloud conditions, while hydration/acetal formation was found to strongly depend on the pH of the system and only occurred at a pH<3.5. No evidence was found for formation of organosulfates. The aldol oligomer series starts with a ?-hydroxy ketone via aldol condensation, where oligomers are formed by multiple additions of C3H4O2 units (72 Da) to the parent ?-hydroxy ketone. Ion trap mass spectrometry experiments were performed to structurally characterize the major oligomer species. A mechanistic pathway for the growth of oligomers under cloud conditions and in the absence of UV-light and OH radicals, which could substantially enhance in-cloud SOA yields, is proposed here for the first time.

  3. Analysis of the organic contaminants in the condensate produced in the in situ underground coal gasification process.

    PubMed

    Smoliński, Adam; Stańczyk, Krzysztof; Kapusta, Krzysztof; Howaniec, Natalia

    2013-01-01

    Addressing the environmental risks related to contamination of groundwater with the phenolics, benzene, toluene, ethyl benzene, xylene (BTEX) and polycyclic aromatic hydrocarbons (PAHs), which might be potentially released from the underground coal gasification (UCG) under adverse hydrogeological and/or operational conditions, is crucial in terms of wider implementation of the process. The aim of this study was to determine the main organic pollutants present in the process condensate generated during the UCG trial performed on hard coal seam in the Experimental Mine 'Barbara', Poland; 8,933 L of condensate was produced in 813 h of experiment duration (including 456 h of the post-process stage) with average phenolics, BTEX and PAH concentrations of 576,000, 42.3 and 1,400.5 μg/L, respectively. The Hierarchical Clustering Analysis was used to explore the differences and similarities between the samples. The sample collected during the first 48 h of the process duration was characterized by the lowest phenanthrene, anthracene, fluoranthene and pyrene contents, high xylene content and the highest concentrations of phenolics, benzene, toluene and ethyl benzene. The samples collected during the stable operation of the UCG process were characterized by higher concentrations of naphthalene, acenaphthene, fluorene, phenanthrene, anthracene, fluoranthene, pyrene, benzo(a)anthracene, chrysene, while in the samples acquired in the post-process stage the lowest concentrations of benzene, toluene, naphthalene, acenaphthene and fluorene were observed. PMID:23202571

  4. Mycofumigation by the volatile organic compound-producing Fungus Muscodor albus induces bacterial cell death through DNA damage.

    PubMed

    Alpha, Cambria J; Campos, Manuel; Jacobs-Wagner, Christine; Strobel, Scott A

    2015-02-01

    Muscodor albus belongs to a genus of endophytic fungi that inhibit and kill other fungi, bacteria, and insects through production of a complex mixture of volatile organic compounds (VOCs). This process of mycofumigation has found commercial application for control of human and plant pathogens, but the mechanism of the VOC toxicity is unknown. Here, the mode of action of these volatiles was investigated through a series of genetic screens and biochemical assays. A single-gene knockout screen revealed high sensitivity for Escherichia coli lacking enzymes in the pathways of DNA repair, DNA metabolic process, and response to stress when exposed to the VOCs of M. albus. Furthermore, the sensitivity of knockouts involved in the repair of specific DNA alkyl adducts suggests that the VOCs may induce alkylation. Evidence of DNA damage suggests that these adducts lead to breaks during DNA replication or transcription if not properly repaired. Additional cytotoxicity profiling indicated that during VOC exposure, E. coli became filamentous and demonstrated an increase in cellular membrane fluidity. The volatile nature of the toxic compounds produced by M. albus and their broad range of inhibition make this fungus an attractive biological agent. Understanding the antimicrobial effects and the VOC mode of action will inform the utility and safety of potential mycofumigation applications for M. albus. PMID:25452287

  5. Analysis of the organic liquid produced from catalytic cracking of crude palm oil in the presence of alumina supported catalysts

    NASA Astrophysics Data System (ADS)

    Ramli, Anita; Razak, Rozlina Abdul

    2012-09-01

    Catalytic cracking of crude palm oil (CPO) was studied in the presence of alumina, 1% Pt/Al2O3 and 1% Pd/Al2O3 as catalyst. The CPO to catalyst weight ratio used was 1:0.05. The experiment was carried out in a simple liquid-phase batch reactor at atmospheric pressure where the sample was heated to 300-350 δC. Products formed were organic liquid products (OLP) and gaseous product with the solid residue remains in the reactor. The total conversion of CPO was only between 25 - 31% where the residue is suggested to be mainly of polimerised CPO. The OLP was analysed using a gas chromatography with FID detector. Analyses show that the selectivity to liquid fuel is influence by the catalyst used whereby Al2O3 gives the highest selectivity to gasoline while 1% Pt/Al2O3 has the highest selectivity to diesel. However, 1% Pd/Al2O3 is not a suitable catalyst for catalytic cracking of CPO to liquid fuel where less than 17.5% of OLP produced could be classified as liquid fuel.

  6. Light out-coupling enhancement of organic light emitting devices using nano-structured substrate produced by rapid thermal processing

    NASA Astrophysics Data System (ADS)

    Gupta, Nidhi; Grover, Rakhi; Mehta, D. S.; Saxena, K.

    2015-07-01

    We report significant enhancement in light out-coupling efficiency of organic light-emitting devices (OLEDs) using a nano-structured substrate by rapid thermal processing (RTP). On the backside of the indium tin oxide (ITO) coated glass substrate a thin film of magnesium fluoride (MgF2) was coated by thermal evaporation. Nano-structured films of MgF2 and ITO were then produced by RTP on both sides of the glass substrate. Bottom-emitting OLEDs were fabricated on the ITO-coated glass substrate with ?-NPD as the hole transport layer, Alq3 as the emissive layer, and LiF and aluminum as the cathode. On the backside of the glass substrate nano-structured MgF2 were fabricated by RTP. Experimental results of enhancement of electroluminescent intensity (EL) with and without nano-structured films are presented. Results of EL intensity of OLED are also compared with the uniform MgF2 film coated on the backside of the substrate. It was found that the enhancement of EL intensity is much higher in the case of nano-porous MgF2 film than in the case of uniform MgF2 coated on the backside of the glass substrate.

  7. Mycofumigation by the Volatile Organic Compound-Producing Fungus Muscodor albus Induces Bacterial Cell Death through DNA Damage

    PubMed Central

    Alpha, Cambria J.; Campos, Manuel; Jacobs-Wagner, Christine

    2014-01-01

    Muscodor albus belongs to a genus of endophytic fungi that inhibit and kill other fungi, bacteria, and insects through production of a complex mixture of volatile organic compounds (VOCs). This process of mycofumigation has found commercial application for control of human and plant pathogens, but the mechanism of the VOC toxicity is unknown. Here, the mode of action of these volatiles was investigated through a series of genetic screens and biochemical assays. A single-gene knockout screen revealed high sensitivity for Escherichia coli lacking enzymes in the pathways of DNA repair, DNA metabolic process, and response to stress when exposed to the VOCs of M. albus. Furthermore, the sensitivity of knockouts involved in the repair of specific DNA alkyl adducts suggests that the VOCs may induce alkylation. Evidence of DNA damage suggests that these adducts lead to breaks during DNA replication or transcription if not properly repaired. Additional cytotoxicity profiling indicated that during VOC exposure, E. coli became filamentous and demonstrated an increase in cellular membrane fluidity. The volatile nature of the toxic compounds produced by M. albus and their broad range of inhibition make this fungus an attractive biological agent. Understanding the antimicrobial effects and the VOC mode of action will inform the utility and safety of potential mycofumigation applications for M. albus. PMID:25452287

  8. 14C-dead living biomass: evidence for microbial assimilation of ancient organic carbon during shale weathering.

    PubMed

    Petsch, S T; Eglington, T I; Edwards, K J

    2001-05-11

    Prokaryotes have been cultured from a modern weathering profile developed on a approximately 365-million-year-old black shale that use macromolecular shale organic matter as their sole organic carbon source. Using natural-abundance carbon-14 analysis of membrane lipids, we show that 74 to 94% of lipid carbon in these cultures derives from assimilation of carbon-14-free organic carbon from the shale. These results reveal that microorganisms enriched from shale weathering profiles are able to use a macromolecular and putatively refractory pool of ancient organic matter. This activity may facilitate the oxidation of sedimentary organic matter to inorganic carbon when sedimentary rocks are exposed by erosion. Thus, microorganisms may play a more active role in the geochemical carbon cycle than previously recognized, with profound implications for controls on the abundance of oxygen and carbon dioxide in Earth's atmosphere over geologic time. PMID:11283356

  9. Bactericidal activity of juvenile chinook salmon macrophages against Aeromonas salmonicida after exposure to live or heat-killed Renibacterium salmoninarum or to soluble proteins produced by R. salmoninarum

    USGS Publications Warehouse

    Siegel, D.C.; Congleton, J.L.

    1997-01-01

    Macrophages isolated from the anterior kidney of juvenile chinook salmon Oncorhynchus tshawytscha in 96-well microtiter plates were exposed for 72 h to 0, 105, or 106 live or heat-killed Renibacterium salmoninarum cells per well or to 0, 0.1, 1.0, or 10 ??g/mL of R. salmoninarum soluble proteins. After treatment, the bactericidal activity of the macrophages against Aerornonas salmonicida was determined by a colorimetric assay based on the reduction of the tetrazolium dye MTT to formazan by viable bacteria. The MTT assay was modified to allow estimation of the percentage of bacteria killed by reference to a standard curve relating the number of bacteria added to microtiter wells to absorbance by formazan at 600 nm. The live and heat-killed R. salmoninarum treatments significantly (P < 0.001) increased killing of A. salmonicida by chinook salmon macrophages. In each of the five trials, significantly (P < 0.05) greater increases in killing occurred after exposure to 105 R. salmoninarum cells than to 106 R. salmoninarum cells per well. In contrast, treatment of macrophages with 10 ??g/mL R. salmoninarum soluble proteins significantly (P < 0.001) decreased killing of A. salmonicida, but treatment with lower doses did not. These results show that the bactericidal activity of chinook salmon macrophages is stimulated by exposure to R. salmoninarum cells at lower dose levels but inhibited by exposure to R. salmoninarum cells or soluble proteins at higher dose levels.

  10. EFFECTS OF DIETARY COPPER, ZINC, LEAD, CADMIUM, AND ARSENIC ON GROWTH AND SURVIVAL OF JUVENILE FISH USING LIVE FOOD ORGANISMS

    EPA Science Inventory

    Except for certain organometallic compounds, dietary exposures of aquatic organisms to metal/metalloids have received little regulatory attention. However, various studies have suggested that dietary exposure could be important, especially in areas where current water column conc...

  11. Stand-off detection of plant-produced volatile organic compounds using short-range Raman LIDAR

    NASA Astrophysics Data System (ADS)

    Johnson, Lewis; Barnett, Cleon; Brown, Christopher; Crawford, Devron; Tumlinson, James

    2004-03-01

    Several plant species release volatile organic compounds (VOCs) when under stresses such as herbivore feeding attack. The release of these plant-produced VOCs (i.e. terpenes) triggers the release of active biochemical defenses, which target the attacker. In some cases, the VOCs send cues to nearby carnivorous predators to attract them to the feeding herbivore. Volatile compounds are released both locally by damaged leaves and systemically by the rest of the plant. These compounds are released in large quantities, which facilitate detection of pests in the field by parasitoids. Detecting the plant"s VOC emissions as a function of various parameters (e.g. ambient temperature, atmospheric nitrogen levels, etc.) is essential to designing effective biological control systems. In addition these VOC releases may serve as early warning indicator of chemo-bio attacks. By combining Raman spectroscopy techniques with Laser Remote Sensing (LIDAR) systems, we are developing a Standoff detection system. Initial results indicate that is it possible to detect and differentiate between various terpenes, plant species, and other chemical compounds at distances greater than 12 meters. Currently, the system uses the 2nd harmonic of a Nd:YAG; however plans are underway to improve the Raman signal by moving the illumination wavelength into the solar-blind UV region. We report on our initial efforts of designing and characterizing this in a laboratory proof of concept system. We envision that this effort will lead to the design of a portable field-deployable system to rapidly characterize, with a high spatial resolution, large crops and other fields.

  12. Association of Cytomegalovirus End-Organ Disease with Stroke in People Living with HIV/AIDS: A Nationwide Population-Based Cohort Study

    PubMed Central

    Yen, Yung-Feng; Jen, Ian; Chen, Marcelo; Chuang, Pei-Hung; Liu, Yen-Ling; Sharp, Gerald B.; Chen, Yi-Ming Arthur

    2016-01-01

    Objectives Cytomegalovirus (CMV) infection might increase the risk of cardiovascular event. However, data on the link between incident stroke and co-infections of CMV and human immunodeficiency virus (HIV) are limited and inconsistent. This nationwide population-based cohort study analyzed the association of CMV end-organ disease and stroke among people living with HIV/AIDS (PLWHA). Methods From January 1, 1998, this study identified adult HIV individuals with and without CMV end-organ disease in the Taiwan National Health Insurance Research Database. All patients were observed for incident stroke and were followed until December 31, 2012. Time-dependent analysis was used to evaluate associations of CMV end-organ disease with stroke. Results Of the 22,581 PLWHA identified (439 with CMV end-organ disease and 22,142 without CMV end-organ disease), 228 (1.01%) had all-cause stroke during a mean follow-up period of 4.85 years, including 169 (0.75%) with ischemic stroke and 59 (0.26%) with hemorrhagic stroke. After adjusting for age, sex, comorbidities, opportunistic infections after HIV diagnosis, and antiretroviral treatment, CMV end-organ disease was found to be an independent risk factor for incident all-cause stroke (adjusted hazard ratio [AHR], 3.07; 95% confidence interval [CI], 1.70 to 5.55). When stroke type was considered, CMV end-organ disease was significantly positively associated with the risk of ischemic stroke (AHR, 3.14; 95% CI, 1.49 to 6.62) but not hemorrhagic stroke (AHR, 2.52; 95% CI, 0.64 to 9.91). Conclusions This study suggested that CMV end-organ disease was an independent predictor of ischemic stroke among PLWHA. PMID:26986005

  13. Estimation of reactogenicity of preparations produced on the basis of photoinactivated live vaccines against brucellosis and tularaemia on the organismic level.1. Using the LASCA method

    NASA Astrophysics Data System (ADS)

    Ulianova, O. V.; Uianov, S. S.; Li, Pengcheng; Luo, Qingming

    2011-04-01

    A new method of photoinactivation of bacteria aimed at producing prototypes of vaccine preparations against extremely dangerous infections is described. The reactogenicity of the new prophylactic preparations was studied using the laser speckle contrast analysis (LASCA). The performed experimental studies show that bacterial suspensions, irradiated using different regimes of photoinactivation, do not cause detrimental effect on the blood microcirculation in laboratory animals.

  14. Polyphenols content, phenolics profile and antioxidant activity of organic red wines produced without sulfur dioxide/sulfites addition in comparison to conventional red wines.

    PubMed

    Garaguso, Ivana; Nardini, Mirella

    2015-07-15

    Wine exerts beneficial effects on human health when it is drunk with moderation. Nevertheless, wine may also contain components negatively affecting human health. Among these, sulfites may induce adverse effects after ingestion. We examined total polyphenols and flavonoids content, phenolics profile and antioxidant activity of eight organic red wines produced without sulfur dioxide/sulfites addition in comparison to those of eight conventional red wines. Polyphenols and flavonoids content were slightly higher in organic wines in respect to conventional wines, however differences did not reach statistical significance. The phenolic acids profile was quite similar in both groups of wines. Antioxidant activity was higher in organic wines compared to conventional wines, although differences were not statistically significant. Our results indicate that organic red wines produced without sulfur dioxide/sulfites addition are comparable to conventional red wines with regard to the total polyphenols and flavonoids content, the phenolics profile and the antioxidant activity. PMID:25722174

  15. Estimation of reactogenicity of preparations produced on the basis of photoinactivated live vaccines against brucellosis and tularaemia on the organismic level. 1. Using the LASCA method

    SciTech Connect

    Ulianova, O V; Uianov, S S; Li Pengcheng; Luo Qingming

    2011-04-30

    A new method of photoinactivation of bacteria aimed at producing prototypes of vaccine preparations against extremely dangerous infections is described. The reactogenicity of the new prophylactic preparations was studied using the laser speckle contrast analysis (LASCA). The performed experimental studies show that bacterial suspensions, irradiated using different regimes of photoinactivation, do not cause detrimental effect on the blood microcirculation in laboratory animals. (optical technologies in biophysics and medicine)

  16. A High Frequency Response Relaxed Eddy Accumulation Flux Measurement System for Sampling Short-Lived Biogenic Volatile Organic Compounds

    EPA Science Inventory

    A second-generation relaxed eddy accumulation system was built and tested with the capability to measure vertical biogenic volatile organic compound (VOC) fluxes at levels as low as 10?µg?C?m?2?hr?1. The system features a continuous, integrated gas-phase ozo...

  17. A High Frequency Response Relaxed Eddy Accumulation Flux Measurement System for Sampling Short-Lived Biogenic Volatile Organic Compounds

    EPA Science Inventory

    A second-generation relaxed eddy accumulation system was built and tested with the capability to measure vertical biogenic volatile organic compound (VOC) fluxes at levels as low as 10 µg C m−2 hr−1. The system features a continuous, integrated gas-phase ozo...

  18. Search for decays of stopped long-lived particles produced in proton–proton collisions at ?s = 8 TeV

    SciTech Connect

    Khachatryan, V.

    2015-04-11

    A search has been performed for long-lived particles that could have come to rest within the CMS detector, using the time intervals between LHC beam crossings. The existence of such particles could be deduced from observation of their decays via energy deposits in the CMS calorimeter appearing at times that are well separated from any proton–proton collisions. Using a data set corresponding to an integrated luminosity of 18.6fb?¹ of 8TeV proton–proton collisions, and a search interval corresponding to 281 h of trigger livetime, 10 events are observed, with a background prediction of 13.2+3.6–2.5 events. Limits are presented at 95 % confidence level on gluino and top squark production, for over 13 orders of magnitude in the mean proper lifetime of the stopped particle. Assuming a cloud model of R-hadron interactions, a gluino with mass ?1000GeV and a top squark with mass ?525GeV are excluded, for lifetimes between 1 ?s and 1000s. These results are the most stringent constraints on stopped particles to date.

  19. Search for decays of stopped long-lived particles produced in proton–proton collisions at ?s = 8 TeV

    DOE PAGESBeta

    Khachatryan, V.

    2015-04-11

    A search has been performed for long-lived particles that could have come to rest within the CMS detector, using the time intervals between LHC beam crossings. The existence of such particles could be deduced from observation of their decays via energy deposits in the CMS calorimeter appearing at times that are well separated from any proton–proton collisions. Using a data set corresponding to an integrated luminosity of 18.6fb?¹ of 8TeV proton–proton collisions, and a search interval corresponding to 281 h of trigger livetime, 10 events are observed, with a background prediction of 13.2+3.6–2.5 events. Limits are presented at 95 %more »confidence level on gluino and top squark production, for over 13 orders of magnitude in the mean proper lifetime of the stopped particle. Assuming a cloud model of R-hadron interactions, a gluino with mass ?1000GeV and a top squark with mass ?525GeV are excluded, for lifetimes between 1 ?s and 1000s. These results are the most stringent constraints on stopped particles to date.« less

  20. Search for decays of stopped long-lived particles produced in proton–proton collisions at $\\sqrt{s}= 8\\,\\text {TeV} $

    DOE PAGESBeta

    Khachatryan, Vardan

    2015-04-11

    A search has been performed for long-lived particles that could have come to rest within the CMS detector, using the time intervals between LHC beam crossings. The existence of such particles could be deduced from observation of their decays via energy deposits in the CMS calorimeter appearing at times that are well separated from any proton–proton collisions. Using a data set corresponding to an integrated luminosity of 18.6 fb-1 of 8 TeV proton–proton collisions, and a search interval corresponding to 281 h of trigger livetime, 10 events are observed, with a background prediction of 13.2+3.6 -2.5 events. Limits are presentedmore »at 95 % confidence level on gluino and top squark production, for over 13 orders of magnitude in the mean proper lifetime of the stopped particle. Assuming a cloud model of R-hadron interactions, a gluino with mass ?1000 GeV and a top squark with mass ?525 GeV are excluded, for lifetimes between 1 µs and 1000 s. Finally, these results are the most stringent constraints on stopped particles to date.« less

  1. Search for decays of stopped long-lived particles produced in proton–proton collisions at $\\sqrt{s}= 8\\,\\text {TeV} $

    SciTech Connect

    Khachatryan, Vardan

    2015-04-11

    A search has been performed for long-lived particles that could have come to rest within the CMS detector, using the time intervals between LHC beam crossings. The existence of such particles could be deduced from observation of their decays via energy deposits in the CMS calorimeter appearing at times that are well separated from any proton–proton collisions. Using a data set corresponding to an integrated luminosity of 18.6 fb-1 of 8 TeV proton–proton collisions, and a search interval corresponding to 281 h of trigger livetime, 10 events are observed, with a background prediction of 13.2+3.6 -2.5 events. Limits are presented at 95 % confidence level on gluino and top squark production, for over 13 orders of magnitude in the mean proper lifetime of the stopped particle. Assuming a cloud model of R-hadron interactions, a gluino with mass ≤1000 GeV and a top squark with mass ≤525 GeV are excluded, for lifetimes between 1 µs and 1000 s. Finally, these results are the most stringent constraints on stopped particles to date.

  2. [Promoting Living Kidney Transplantation].

    PubMed

    Lin, Chiu-Chu

    2016-04-01

    Kidney transplantation is the best approach for treating patients with end stage renal disease, offering patients the best chance of returning to normal health. While the techniques used in kidney transplantation surgery are mature and highly successful, there is a severe shortage of donor organs. Statistics show a serious imbalance between organ donations and patients on the waiting list for organ transplantation. Moreover, evidence from empirical studies has shown a better transplantation outcome for patients who receive living donor transplantation than for those who receive organs from cadavers. Although using relatives as donors offers an effective way to reduce the problem of organ shortage, this strategy faces many challenges and many other factors affect the promotion of living donor transplantation. This article elaborates how cultural and psychological factors, kidney transplantation awareness, and ethics and laws impact upon living kidney donations and then proposes coping strategies for promoting living kidney transplantation. PMID:27026555

  3. Detection of live Salmonella sp. cells in produce by a TaqMan-based quantitative reverse transcriptase real-time PCR targeting invA mRNA.

    PubMed

    González-Escalona, Narjol; Hammack, Thomas S; Russell, Mindi; Jacobson, Andrew P; De Jesús, Antonio J; Brown, Eric W; Lampel, Keith A

    2009-06-01

    Salmonella enterica contamination in foods is a significant concern for public health. When DNA detection methods are used for analysis of foods, one of the major concerns is false-positive results from the detection of dead cells. To circumvent this crucial issue, a TaqMan quantitative real-time RT-PCR (qRT-PCR) assay with an RNA internal control was developed. invA RNA standards were used to determine the detection limit of this assay as well as to determine invA mRNA levels in mid-exponential-, late-exponential-, and stationary-phase cells. This assay has a detection limit of 40 copies of invA mRNA per reaction. The levels of invA mRNA in mid-exponential-, late-exponential-, and stationary-phase S. enterica cells was approximately 1 copy per 3 CFU, 1 copy per CFU, and 4 copies per 10(3) CFU, respectively. Spinach, tomatoes, jalapeno peppers, and serrano peppers were artificially contaminated with four different Salmonella serovars at levels of 10(5) and less than 10 CFU. These foods were analyzed with qRT-PCR and with the FDA's Bacteriological Analytical Manual Salmonella culture method (W. A. Andrews and T. S. Hammack, in G. J. Jackson et al., ed., Bacteriological analytical manual online, http://www.cfsan.fda.gov/ approximately ebam/bam-5.html, 2007). Comparable results were obtained by both methods. Only live Salmonella cells could be detected by this qRT-PCR assay, thus avoiding the dangers of false-positive results from nonviable cells. False negatives (inhibition of the PCR) were also ruled out through the use of an RNA internal control. This assay allows for the fast and accurate detection of viable Salmonella spp. in spinach, tomatoes, and in both jalapeno and serrano peppers. PMID:19376910

  4. Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT

    PubMed Central

    Pavan, María Elisa; Pavan, Esteban E.; López, Nancy I.; Levin, Laura

    2015-01-01

    Aeromonas salmonicida subsp. pectinolytica 34melT can be considered an extremophile due to the characteristics of the heavily polluted river from which it was isolated. While four subspecies of A. salmonicida are known fish pathogens, 34melT belongs to the only subspecies isolated solely from the environment. Genome analysis revealed a high metabolic versatility, the capability to cope with diverse stress agents, and the lack of several virulence factors found in pathogenic Aeromonas. The most relevant phenotypic characteristics of 34melT are pectin degradation, a distinctive trait of A. salmonicida subsp. pectinolytica, and melanin production. Genes coding for three pectate lyases were detected in a cluster, unique to this microorganism, that contains all genes needed for pectin degradation. Melanin synthesis in 34melT is hypothesized to occur through the homogentisate pathway, as no tyrosinases or laccases were detected and the homogentisate 1,2-dioxygenase gene is inactivated by a transposon insertion, leading to the accumulation of the melanin precursor homogentisate. Comparative genome analysis of other melanogenic Aeromonas strains revealed that this gene was inactivated by transposon insertions or point mutations, indicating that melanin biosynthesis in Aeromonas occurs through the homogentisate pathway. Horizontal gene transfer could have contributed to the adaptation of 34melT to a highly polluted environment, as 13 genomic islands were identified in its genome, some of them containing genes coding for fitness-related traits. Heavy metal resistance genes were also found, along with others associated with oxidative and nitrosative stresses. These characteristics, together with melanin production and the ability to use different substrates, may explain the ability of this microorganism to live in an extremely polluted environment. PMID:26025898

  5. Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT.

    PubMed

    Pavan, María Elisa; Pavan, Esteban E; López, Nancy I; Levin, Laura; Pettinari, M Julia

    2015-08-01

    Aeromonas salmonicida subsp. pectinolytica 34mel(T) can be considered an extremophile due to the characteristics of the heavily polluted river from which it was isolated. While four subspecies of A. salmonicida are known fish pathogens, 34mel(T) belongs to the only subspecies isolated solely from the environment. Genome analysis revealed a high metabolic versatility, the capability to cope with diverse stress agents, and the lack of several virulence factors found in pathogenic Aeromonas. The most relevant phenotypic characteristics of 34mel(T) are pectin degradation, a distinctive trait of A. salmonicida subsp. pectinolytica, and melanin production. Genes coding for three pectate lyases were detected in a cluster, unique to this microorganism, that contains all genes needed for pectin degradation. Melanin synthesis in 34mel(T) is hypothesized to occur through the homogentisate pathway, as no tyrosinases or laccases were detected and the homogentisate 1,2-dioxygenase gene is inactivated by a transposon insertion, leading to the accumulation of the melanin precursor homogentisate. Comparative genome analysis of other melanogenic Aeromonas strains revealed that this gene was inactivated by transposon insertions or point mutations, indicating that melanin biosynthesis in Aeromonas occurs through the homogentisate pathway. Horizontal gene transfer could have contributed to the adaptation of 34mel(T) to a highly polluted environment, as 13 genomic islands were identified in its genome, some of them containing genes coding for fitness-related traits. Heavy metal resistance genes were also found, along with others associated with oxidative and nitrosative stresses. These characteristics, together with melanin production and the ability to use different substrates, may explain the ability of this microorganism to live in an extremely polluted environment. PMID:26025898

  6. Bayesian total internal reflection fluorescence correlation spectroscopy reveals hIAPP-induced plasma membrane domain organization in live cells.

    PubMed

    Guo, Syuan-Ming; Bag, Nirmalya; Mishra, Aseem; Wohland, Thorsten; Bathe, Mark

    2014-01-01

    Amyloid fibril deposition of human islet amyloid polypeptide (hIAPP) in pancreatic islet cells is implicated in the pathogenesis of type II diabetes. A growing number of studies suggest that small peptide aggregates are cytotoxic via their interaction with the plasma membrane, which leads to membrane permeabilization or disruption. A recent study using imaging total internal reflection-fluorescence correlation spectroscopy (ITIR-FCS) showed that monomeric hIAPP induced the formation of cellular plasma membrane microdomains containing dense lipids, in addition to the modulation of membrane fluidity. However, the spatial organization of microdomains and their temporal evolution were only partially characterized due to limitations in the conventional analysis and interpretation of imaging FCS datasets. Here, we apply a previously developed Bayesian analysis procedure to ITIR-FCS data to resolve hIAPP-induced microdomain spatial organization and temporal dynamics. Our analysis enables the visualization of the temporal evolution of multiple diffusing species in the spatially heterogeneous cell membrane, lending support to the carpet model for the association mode of hIAPP aggregates with the plasma membrane. The presented Bayesian analysis procedure provides an automated and general approach to unbiased model-based interpretation of imaging FCS data, with broad applicability to resolving the heterogeneous spatial-temporal organization of biological membrane systems. PMID:24411251

  7. Characterization of microbial content of organic and conventional produce in Maryland relative to production practices and inputs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Introduction: Production inputs/practices such as soil amendments, water quality, animal intrusion, and human activity can influence microbial quality of fresh produce. Limited data on production practices relative to microbial/pathogen content of fresh produce are currently available for either org...

  8. Reporting a new siderophore based Ca(2+) selective chemosensor that works as a staining agent in the live organism Artemia.

    PubMed

    Raju, M; Nair, Ratish R; Raval, Ishan H; Haldar, Soumya; Chatterjee, Pabitra B

    2015-11-21

    A Ca(2+)-specific chemosensor involving acyclic non-ether and non-carboxylato-type metal chelating ligands is rare. The tetradentate OONO artificial receptor, HL, possessing a sulfur-containing intermediate siderophore aeruginic acid, tethered to a rhodamine 6G based signalling unit in a single molecule has been synthesized. The fluoroionophore required excitation in the visible wavelength (510 nm) and showed highly selective and sensitive detection of Ca(2+) ions in 100% water solution in HEPES buffer at physiological pH (7.4). The probe HL, with LOD as low as 70 nM, behaves reversibly and showed nearly 17-fold enhanced selectivity for Ca(2+) over other cell abundant alkali and alkaline metal ions such as Na(+), K(+), Li(+), and Mg(2+) without any intervention. Job's plot, (1)H NMR titration and ESI-MS data provided corroborative evidence in support of 1?:?1 association between HL and Ca(2+). From a wide range of transition and heavy metal ions series, HL also binds Cu(2+). However, the use of l-cysteine removes the interference from Cu(2+) and results in highly selective detection specificity of HL for Ca(2+). As a reversible "off-on-off" fluorescent chemosensor, it is possible to detect Ca(2+) at as low as 5 ?M in the midgut region of the gastrointestinal tract of the live animal Artemia, a brine shrimp. PMID:26460620

  9. Impact of Amorphous SiO2 Nanoparticles on a Living Organism: Morphological, Behavioral, and Molecular Biology Implications.

    PubMed

    Ambrosone, Alfredo; Scotto di Vettimo, Maria Rosaria; Malvindi, Maria Ada; Roopin, Modi; Levy, Oren; Marchesano, Valentina; Pompa, Pier Paolo; Tortiglione, Claudia; Tino, Angela

    2014-01-01

    It is generally accepted that silica (SiO2) is not toxic. But the increasing use of silica nanoparticles (SiO2NPs) in many different industrial fields has prompted the careful investigation of their toxicity in biological systems. In this report, we describe the effects elicited by SiO2NPs on animal and cell physiology. Stable and monodisperse amorphous silica nanoparticles, 25?nM in diameter, were administered to living Hydra vulgaris (Cnidaria). The dose-related effects were defined by morphological and behavioral assays. The results revealed an all-or-nothing lethal toxicity with a rather high threshold (35?nM NPs) and a LT50 of 38?h. At sub lethal doses, the morphophysiological effects included: animal morphology alterations, paralysis of the gastric region, disorganization and depletion of tentacle specialized cells, increase of apoptotic and collapsed cells, and reduction of the epithelial cell proliferation rate. Transcriptome analysis (RNAseq) revealed 45 differentially expressed genes, mostly involved in stress response and cuticle renovation. Our results show that Hydra reacts to SiO2NPs, is able to rebalance the animal homeostasis up to a relatively high doses of SiO2NPs, and that the physiological modifications are transduced to gene expression modulation. PMID:25325055

  10. Impact of Amorphous SiO2 Nanoparticles on a Living Organism: Morphological, Behavioral, and Molecular Biology Implications

    PubMed Central

    Ambrosone, Alfredo; Scotto di Vettimo, Maria Rosaria; Malvindi, Maria Ada; Roopin, Modi; Levy, Oren; Marchesano, Valentina; Pompa, Pier Paolo; Tortiglione, Claudia; Tino, Angela

    2014-01-01

    It is generally accepted that silica (SiO2) is not toxic. But the increasing use of silica nanoparticles (SiO2NPs) in many different industrial fields has prompted the careful investigation of their toxicity in biological systems. In this report, we describe the effects elicited by SiO2NPs on animal and cell physiology. Stable and monodisperse amorphous silica nanoparticles, 25?nM in diameter, were administered to living Hydra vulgaris (Cnidaria). The dose-related effects were defined by morphological and behavioral assays. The results revealed an all-or-nothing lethal toxicity with a rather high threshold (35?nM NPs) and a LT50 of 38?h. At sub lethal doses, the morphophysiological effects included: animal morphology alterations, paralysis of the gastric region, disorganization and depletion of tentacle specialized cells, increase of apoptotic and collapsed cells, and reduction of the epithelial cell proliferation rate. Transcriptome analysis (RNAseq) revealed 45 differentially expressed genes, mostly involved in stress response and cuticle renovation. Our results show that Hydra reacts to SiO2NPs, is able to rebalance the animal homeostasis up to a relatively high doses of SiO2NPs, and that the physiological modifications are transduced to gene expression modulation. PMID:25325055

  11. Subcellular Distribution of Heavy Metals in Organs of Bivalve Modiolus Modiolus Living Along a Metal Contamination Gradient

    NASA Astrophysics Data System (ADS)

    Podgurskaya, Olga V.; Kavun, Victor Ya.

    2006-03-01

    Concentration and distribution of Fe, Zn, Cu, Cd, Mn, Pb, Ni among subcellular fractions (cellular membrane structures and cytosol) and Zn, Cu, Cd among cytoplasmic proteins in the kidney and digestive gland of mussel Modiolus modiolus living along a polymetallic concentration gradient were studied. It was found in the kidney of M. modiolus from contaminated sites that the Fe percent increased in the “membrane” fraction, whereas Zn, Pb, Ni and Mn percent increased in the cytosol compared to the kidney of the control mussel. Note kidney cytosol of M. modiolus from clean and contaminated sites sequestered major parts of Cu and Cd. In the digestive gland of M. modiolus from contaminated sites Fe, Zn, Cd, Mn, Ni percent increased in the “membrane” fraction, whereas Cu, Pb percent increased in the cytosol compared to digestive gland of control mussel. Gel-filtration chromatography shows kidney of M. modiolus contains increased metallothionein-like protein levels irrespective of ambient dissolved metal concentrations. It was shown that the metal detoxification system in the kidney and digestive gland of M. modiolus was efficient under extremely high ambient metal levels. However, under complex environmental contamination in the kidney of M. modiolus, the metal detoxification capacity of metallothionein-like proteins was damaged.

  12. Freezing of living cells

    SciTech Connect

    Mazur, P.

    1985-01-01

    It can be calculated that a living cell will survive more than 5000 years at -196/sup 0/C. This ability to essentially stop biological time has important implications in medicine and agriculture, and in biological research. In medicine the chief implications are in the banking of transplantable tissues and organs and in in vitro fertilization. In agriculture the applications stem in part from the role of frozen embryos in amplifying the number of calves produced by high quanlity cows. The problem is how can cells survive both the cooling to such very low temperatures and the return to normal temperatures. The answers involve fundamental characteristics of cells such as the permeability of their surface membranes to water and solutes. These characteristics determine whether or not cells undergo lethal internal ice formation and other response during freezing and thawing. 27 refs., 12 figs.

  13. High throughput and wide field of view EUV microscope for blur-free one-shot imaging of living organisms.

    PubMed

    Ejima, Takeo; Ishida, Fumihiko; Murata, Hiromichi; Toyoda, Mitsunori; Harada, Tetsuo; Tsuru, Toshihide; Hatano, Tadashi; Yanagihara, Mihiro; Yamamoto, Masaki; Mizutani, Haruo

    2010-03-29

    We present and demonstrate the use of an extreme ultraviolet (EUV) microscope that was developed in-house. Images are acquired using Bragg reflection multilayer optics and a laser-produced plasma light source. The upper-limit spatial resolution of the EUV microscope is 130 nm with a 10 ns exposure time and 250 x 250 microm(2) field of view. Resolution is superior to that of visible microscopes with the same size of field of view, and the exposure time is short enough to observe fine structures in-vivo. Observation of the cerebral cortex of a mouse is demonstrated. PMID:20389741

  14. Evaluation of the COSHH Essentials Model with a Mixture of Organic Chemicals at a Medium-Sized Paint Producer

    PubMed Central

    Lee, Eun Gyung; Slaven, James; Bowen, Russell B.; Harper, Martin

    2011-01-01

    The Control of Substances Hazardous to Health (COSHH) Essentials model was evaluated using full-shift exposure measurements of five chemical components in a mixture [acetone, ethylbenzene, methyl ethyl ketone, toluene, and xylenes] at a medium-sized plant producing paint materials. Two tasks, batch-making and bucket-washing, were examined. Varying levels of control were already established in both tasks and the average exposures of individual chemicals were considerably lower than the regulatory and advisory 8-h standards. The average exposure fractions using the additive mixture formula were also less than unity (batch-making: 0.25, bucket-washing: 0.56) indicating the mixture of chemicals did not exceed the combined occupational exposure limit (OEL). The paper version of the COSHH Essentials model was used to calculate a predicted exposure range (PER) for each chemical according to different levels of control. The estimated PERs of the tested chemicals for both tasks did not show consistent agreement with exposure measurements when the comparison was made for each control method and this is believed to be because of the considerably different volatilities of the chemicals. Given the combination of health hazard and exposure potential components, the COSHH Essentials model recommended a control approach ‘special advice’ for both tasks, based on the potential reproductive hazard ascribed to toluene. This would not have been the same conclusion if some other chemical had been substituted (for example styrene, which has the same threshold limit value as toluene). Nevertheless, it was special advice, which had led to the combination of hygienic procedures in place at this plant. The probability of the combined exposure fractions exceeding unity was 0.0002 for the batch-making task indicating that the employees performing this task were most likely well protected below the OELs. Although the employees involved in the bucket-washing task had greater potential to exceed the threshold limit value of the mixture (P > 1 = 0.2375), the expected personal exposure after adjusting for the assigned protection factor for the respirators in use would be considerably lower (P > 1 = 0.0161). Thus, our findings suggested that the COSHH essentials model worked reasonably well for the volatile organic chemicals at the plant. However, it was difficult to override the reproductive hazard even though it was meant to be possible in principle. Further, it became apparent that an input of existing controls, which is not possible in the web-based model, may have allowed the model be more widely applicable. The experience of using the web-based COSHH Essentials model generated some suggestions to provide a more user-friendly tool to the model users who do not have expertise in occupational hygiene. PMID:21047985

  15. Partitioning of semi-soluble organic compounds between the water phase and oil droplets in produced water.

    PubMed

    Faksness, Liv-Guri; Grini, Per Gerhard; Daling, Per S

    2004-04-01

    When selecting produced water treatment technologies, one should focus on reducing the major contributors to the total environmental impact. These are dispersed oil and semi-soluble hydrocarbons, alkylated phenols, and added chemicals. Experiments with produced water have been performed offshore on the Statoil operated platforms Gullfaks C and Statfjord B. These experiments were designed to find how much of the environmentally relevant compounds were dissolved in the water phase and not associated to the dispersed oil in the produced water. Results show that the distribution between the dispersed oil and the water phase varies highly for the different components groups. For example the concentration of PAHs and the C6-C9 alkylated phenols is strongly correlated to the content of dispersed oil. Therefore, the technologies enhancing the removal of dispersed oil have a higher potential for reducing the environmental impact of the produced water than previously considered. PMID:15041429

  16. A Highly Sensitive Fluorescent Sensor for Palladium and Direct Imaging of Its Ecotoxicity in Living Model Organisms.

    PubMed

    Liu, Fei; Du, Juan; Xu, Meiying; Sun, Guoping

    2016-01-01

    Rhodamine is an ideal platform for fluorescence probes owing to its spiro-lactam framework and excellent photochemical properties. Herein, a novel rhodamine-based palladium fluorescent chemosensor, Rd-Eb, showing a fast response time (3 min), high sensitivity for palladium species over other ions, and a low detection limit (1.91×10(-7)  m), was synthesized. It can act as an obvious colorimetric as well as a fluorescent "off/on" sensor for Pd(2+) . In addition, it is also an excellent sensor for in vivo imaging of Pd(2+) in zebra fish and Daphnia magna, illuminating the impact of palladium on organisms at different growth stages with respect to biological toxicology. PMID:26419633

  17. Construction of a recombinant allergen-producing probiotic bacterial strain: Introduction of a new line for a live oral vaccine against Chenopodium album pollen allergy

    PubMed Central

    Roozbeh Nasiraie, Leila; Tabatabaie, Farideh; Sankian, Mojtaba; Shahidi, Fakhri; Varasteh, Abdolreza

    2013-01-01

    Background: During the last two decades, significant advances have been made in the fields of lactococcal genetics and protein expression. Lactococcus lactis (L. lactis) is an effective vector for protein expression and can be used as an antigen delivery system. Hence, L. lactis is an ideal candidate for mucosal immunotherapy. Profilin (Che a 2), the major allergen in Chenopodium album, is one of the most important causes of allergic diseases in desert and semi-desert areas, especially in Iran, Saudi Arabia, and Kuwait that was cloned and expressed in L. lactis for the first time. Methods: To construct L. lactis that expressed Che a 2, a DNA sequence was cloned and used to transform bacteria. Expression of Che a 2 was analyzed via monitoring of related RNA and protein. Hydrophobicity, adherence to HT-29 cells, antibiotic resistance, resistance to gastrointestinal contents, pH, and bile salt in recombinant and native L. lactis were evaluated. Results: Immunoblot analyses demonstrated that recombinant Che a 2 is expressed as a 32 kDa dimeric protein immunological studies showed it can bind human IgE. Both native and recombinant bacteria were sensitive to low pH and simulated gastric conditions. Bacterial survival was reduced 80-100% after 2 h of exposure to pH 1.5-2. Both native and recombinant bacteria were able to grow in 0.3 and 2% bile salts. After incubation of recombinant L. lactis in simulated gastric and intestinal juices for one and two hours, respectively, cell survival was reduced by 100%. Adhesion capability in both strains was minimal and there were no significant differences in any of our tests between native and recombinant bacteria. Conclusion: Successfully recombinant L. lactis with capability of expression Che a 2 was produced and revealed it is sensitive to gastrointestinal contents. PMID:26989716

  18. The complete mitochondrial genome of a tree frog, Polypedates megacephalus (Amphibia: Anura: Rhacophoridae), and a novel gene organization in living amphibians.

    PubMed

    Zhang, Peng; Zhou, Hui; Liang, Dan; Liu, Yi-Fei; Chen, Yue-Qin; Qu, Liang-Hu

    2005-02-14

    In this study, we have determined the complete sequence of the mitochondrial genome of an Old World tree frog Polypedates megacephalus (Anura: Rhacophoridae) by using a long polymerase chain reaction (PCR) technique and shotgun strategy of sequencing. The entire mtDNA sequence is 16,473 nt long with a novel mitogenomic gene organization in amphibians. Unlike other neobatrachian frogs, the transfer ribonucleic acid (tRNA)-Leu(CUN) and tRNA-Thr genes exchange their positions in P. megacephalus and form a Thr-Leu(CUN)-Pro-Phe tRNA gene tetrad. Moreover, we found that the ATP8 gene was replaced by a noncoding sequence of 853 nt long and that the ND5 gene was absent in the new mitogenome. These peculiar features of P. megacephalus mtDNA were further studied among related anuran species by PCR amplification. The new sequence data was used to assess the phylogenetic relationships of the three living amphibian orders using neighbor-joining, maximum likelihood, and Bayesian methods. In agreement with most morphological studies, phylogenetic analyses of a whole mitochondrial genome data set suggest a close relationship between salamanders and frogs. Moreover, using a molecular clock-independent Bayesian approach for inferring dating information from molecular phylogenies, we have provided a rough timescale for living amphibian evolution. This timescale provides a working framework for future paleontological researches on amphibian evolution and improves our understanding of the evolutionary history of modern amphibians. PMID:15716017

  19. Comparison of Surface Water Quality and Yields from Organically and Conventionally Produced Sweet Corn Plots with Conservation and Conventional Tillage.

    PubMed

    Edgell, Joshua; Osmond, D L; Line, D E; Hoyt, G D; Grossman, J M; Larsen, E M

    2015-11-01

    Organic agricultural systems are often assumed to be more sustainable than conventional farming, yet there has been little work comparing surface water quality from organic and conventional production, especially under the same cropping sequence. Our objective was to compare nutrient and sediment losses, as well as sweet corn ( L. var. ) yield, from organic and conventional production with conventional and conservation tillage. The experiment was located in the Appalachian Mountains of North Carolina. Four treatments, replicated four times, had been in place for over 18 yr and consisted of conventional tillage (chisel plow and disk) with conventional production (CT/Conven), conservation no-till with conventional production (NT/Conven), conventional tillage with organic production (CT/Org), and conservation no-till with organic production (NT/Org). Water quality (surface flow volume; nitrogen, phosphorus, and sediment concentrations) and sweet corn yield data were collected in 2011 and 2012. Sediment and sediment-attached nutrient losses were influenced by tillage and cropping system in 2011, due to higher rainfall, and tillage in 2012. Soluble nutrients were affected by the nutrient source and rate, which are a function of the cropping system. Sweet corn marketable yields were greater in conventional systems due to high weed competition and reduced total nitrogen availability in organic treatments. When comparing treatment efficiency (yield kg ha /nutrient loss kg ha ), the NT/Conven treatment had the greatest sweet corn yield per unit of nutrient and sediment loss. Other treatment ratios were similar to each other; thus, it appears the most sustainably productive treatment was NT/Conven. PMID:26641338

  20. Biological half-lives and organ distribution of tritiated 8-lysine-vasopressin and 1-deamino-8-D-arginine-vasopressin in Brattleboro rats

    SciTech Connect

    Janaky, T.; Laczi, F.; Laszlo, F.A.

    1982-01-01

    The biological half-lives and organ distribution of tritiated 8-lysine-vasopressin and 1-deamino-8-D-arginine-vasopressin were determined in R-Amsterdam rats and in homozygous and heterozygous Brattleboro rats with hereditary central diabetes insipidus. It was found that the biological half-lives of (/sup 3/H)LVP and (/sup 3/H)dDAVP in the Brattleboro rats did not differ significantly from that found in the control R-Amsterdam rats. The half-life of (/sup 3/H)dDAVP proved longer than that of (/sup 3/H)LVP in all three groups of animals. In the case of (/sup 3/H)LVP the highest radioactivities were observed in the neurohypophyses, adenohypophyses, and kidneys of both the R-Amsterdam and Brattleboro rats. The accumulation of tritiated material was higher in the small intestine of the Brattleboro rats than in that of the R-Amsterdam animals. In all three groups of rats, (/sup 3/H)dDAVP was accumulated to the greatest extent in the kidney and the small intestine. The kidney and small intestine contained less radioactivity in homozygous Brattleboro rats than in the controls. There was only a slight radioactivity accumulation in the adenohypophysis and neurohypophysis. From the results it was concluded that the decrease in the rate of enzymatic decomposition may play a role in the increased duration of antidiuretic action of dDAVP. The results have led to the conclusion that the accelerated elimination of vasopressin and its pathologic organ accumulation are probably not involved in the water metabolism disturbance of Brattleboro rats with hereditary diabetes insipidus.

  1. Exploring the evolution of a trade-off between vigilance and foraging in group-living organisms.

    PubMed

    Olson, Randal S; Haley, Patrick B; Dyer, Fred C; Adami, Christoph

    2015-09-01

    Even though grouping behaviour has been actively studied for over a century, the relative importance of the numerous proposed fitness benefits of grouping remain unclear. We use a digital model of evolving prey under simulated predation to directly explore the evolution of gregarious foraging behaviour according to one such benefit, the 'many eyes' hypothesis. According to this hypothesis, collective vigilance allows prey in large groups to detect predators more efficiently by making alarm signals or behavioural cues to each other, thereby allowing individuals within the group to spend more time foraging. Here, we find that collective vigilance is sufficient to select for gregarious foraging behaviour as long there is not a direct cost for grouping (e.g. competition for limited food resources), even when controlling for confounding factors such as the dilution effect. Furthermore, we explore the role of the genetic relatedness and reproductive strategy of the prey and find that highly related groups of prey with a semelparous reproductive strategy are the most likely to evolve gregarious foraging behaviour mediated by the benefit of vigilance. These findings, combined with earlier studies with evolving digital organisms, further sharpen our understanding of the factors favouring grouping behaviour. PMID:26473039

  2. Exploring the evolution of a trade-off between vigilance and foraging in group-living organisms

    PubMed Central

    Olson, Randal S.; Haley, Patrick B.; Dyer, Fred C.; Adami, Christoph

    2015-01-01

    Even though grouping behaviour has been actively studied for over a century, the relative importance of the numerous proposed fitness benefits of grouping remain unclear. We use a digital model of evolving prey under simulated predation to directly explore the evolution of gregarious foraging behaviour according to one such benefit, the ‘many eyes’ hypothesis. According to this hypothesis, collective vigilance allows prey in large groups to detect predators more efficiently by making alarm signals or behavioural cues to each other, thereby allowing individuals within the group to spend more time foraging. Here, we find that collective vigilance is sufficient to select for gregarious foraging behaviour as long there is not a direct cost for grouping (e.g. competition for limited food resources), even when controlling for confounding factors such as the dilution effect. Furthermore, we explore the role of the genetic relatedness and reproductive strategy of the prey and find that highly related groups of prey with a semelparous reproductive strategy are the most likely to evolve gregarious foraging behaviour mediated by the benefit of vigilance. These findings, combined with earlier studies with evolving digital organisms, further sharpen our understanding of the factors favouring grouping behaviour. PMID:26473039

  3. Aspects of a Distinct Cytotoxicity of Selenium Salts and Organic Selenides in Living Cells with Possible Implications for Drug Design.

    PubMed

    Estevam, Ethiene Castellucci; Witek, Karolina; Faulstich, Lisa; Nasim, Muhammad Jawad; Latacz, Gniewomir; Domínguez-Álvarez, Enrique; Kie?-Kononowicz, Katarzyna; Demasi, Marilene; Handzlik, Jadwiga; Jacob, Claus

    2015-01-01

    Selenium is traditionally considered as an antioxidant element and selenium compounds are often discussed in the context of chemoprevention and therapy. Recent studies, however, have revealed a rather more colorful and diverse biological action of selenium-based compounds, including the modulation of the intracellular redox homeostasis and an often selective interference with regulatory cellular pathways. Our basic activity and mode of action studies with simple selenium and tellurium salts in different strains of Staphylococcus aureus (MRSA) and Saccharomyces cerevisiae indicate that such compounds are sometimes not particularly toxic on their own, yet enhance the antibacterial potential of known antibiotics, possibly via the bioreductive formation of insoluble elemental deposits. Whilst the selenium and tellurium compounds tested do not necessarily act via the generation of Reactive Oxygen Species (ROS), they seem to interfere with various cellular pathways, including a possible inhibition of the proteasome and hindrance of DNA repair. Here, organic selenides are considerably more active compared to simple salts. The interference of selenium (and tellurium) compounds with multiple targets could provide new avenues for the development of effective antibiotic and anticancer agents which may go well beyond the traditional notion of selenium as a simple antioxidant. PMID:26263963

  4. A comparison of the character of algal extracellular versus cellular organic matter produced by cyanobacterium, diatom and green alga.

    PubMed

    Pivokonsky, Martin; Safarikova, Jana; Baresova, Magdalena; Pivokonska, Lenka; Kopecka, Ivana

    2014-03-15

    This study investigated characteristics of algal organic matter (AOM) derived from three species (cyanobacterium Microcystis aeruginosa, diatom Fragilaria crotonensis and green alga Chlamydomonas geitleri) which dominate phytoplanktonic populations in reservoirs supplying drinking water treatment plants. Algal growth was monitored by cell counting, optical density and dissolved organic carbon concentration measurements. Extracellular organic matter (EOM) released at exponential and stationary growth phases and cellular organic matter (COM) were characterised in terms of specific UV absorbance (SUVA), peptide/protein and non-peptide content, hydrophobicity and molecular weight (MW). It was found that both EOM and COM were predominantly hydrophilic with low SUVA. COM was richer in peptides/proteins, more hydrophilic (with about 89% of hydrophilic fraction for all three species) and had lower SUVA than EOM. MW fractionation showed that both EOM and COM of all three species contain large portions of low-MW (<1 kDa) compounds and high-MW (>100 kDa) polysaccharides. Peptides/proteins exhibited narrower MW distribution than non-peptide fraction and it widened as the cultures grew. The highest amount of peptides/proteins with a significant portion of high-MW ones (22%) was observed in COM of M. aeruginosa. The results imply that the knowledge of AOM composition and characteristics predetermine which processes would be effective in the treatment of AOM laden water. PMID:24388829

  5. Living liquid crystals

    PubMed Central

    Zhou, Shuang; Sokolov, Andrey; Lavrentovich, Oleg D.; Aranson, Igor S.

    2014-01-01

    Collective motion of self-propelled organisms or synthetic particles, often termed “active fluid,” has attracted enormous attention in the broad scientific community because of its fundamentally nonequilibrium nature. Energy input and interactions among the moving units and the medium lead to complex dynamics. Here, we introduce a class of active matter––living liquid crystals (LLCs)––that combines living swimming bacteria with a lyotropic liquid crystal. The physical properties of LLCs can be controlled by the amount of oxygen available to bacteria, by concentration of ingredients, or by temperature. Our studies reveal a wealth of intriguing dynamic phenomena, caused by the coupling between the activity-triggered flow and long-range orientational order of the medium. Among these are (i) nonlinear trajectories of bacterial motion guided by nonuniform director, (ii) local melting of the liquid crystal caused by the bacteria-produced shear flows, (iii) activity-triggered transition from a nonflowing uniform state into a flowing one-dimensional periodic pattern and its evolution into a turbulent array of topological defects, and (iv) birefringence-enabled visualization of microflow generated by the nanometers-thick bacterial flagella. Unlike their isotropic counterpart, the LLCs show collective dynamic effects at very low volume fraction of bacteria, on the order of 0.2%. Our work suggests an unorthodox design concept to control and manipulate the dynamic behavior of soft active matter and opens the door for potential biosensing and biomedical applications. PMID:24474746

  6. [Investigation of Inulinase Permolecular Organization from Producers of the Genus Aspergillus by Means of Some Computing and Experimental Methods].

    PubMed

    Holyavka, M G; Artyukhov, V G; Makin, S M

    2015-01-01

    The computer model for a dimer of inulinase from Aspergillus ficuum is designed. The permolecular organization of inulinase from Aspergillus niger is experimentally investigated. The question about the role of various inulinase forms in manifestation of their functional activity is discussed. It is shown, that in the process of inulinase dimerization when contacts between monomeric forms of the enzyme are formed, a key role belongs to the nonpolar amino acid residues. PMID:26394462

  7. Secondary organic aerosol produced from aircraft emissions at the Atlanta Airport: An advanced diagnostic investigation using process analysis

    NASA Astrophysics Data System (ADS)

    Woody, Matthew C.; Arunachalam, Saravanan

    2013-11-01

    Efforts using the Community Multiscale Air Quality (CMAQ) model to investigate the impacts of aircraft emissions from the Hartsfield-Jackson Atlanta International Airport have previously shown aircraft emissions increased total daily PM2.5 concentrations by up to 9.4% (0.94 μg m-3) with overall impacts varying by modeled grid resolution. However, those results also indicated that secondary organic aerosol (SOA) concentrations in the airport grid cell were reduced due to aircraft emissions at coarser grid resolutions (36-km and 12-km) but not at a finer resolution (4-km). To investigate this anomaly, this study instruments the CMAQ model with process analysis, an advanced diagnostic modeling tool, and focuses on changes to SOA concentrations due to aircraft emissions in the grid cells containing the Atlanta airport at grid resolutions of 36-km, 12-km, and 4-km. Model results indicated aircraft emissions reduced hourly anthropogenic and biogenic SOA concentrations at the 36-km and 12-km grid resolutions by up to 6.2% (0.052 μg m-3) by removing nitrate, hydroxyl, and hydroperoxy radicals through chemistry. At the 4-km resolution, however, hourly modeled SOA concentrations increased (primarily due to changes in biogenic SOA) by up to 11.5% (0.081 μg m-3) due to primary organic aerosol emissions from aircraft, with the additional organic mass shifting partitioning of SOA semi-volatile gas phase species into the particle phase.

  8. Assisted Living

    MedlinePLUS

    ... but they don't need full-time nursing care. Some assisted living facilities are part of retirement ... change. Assisted living costs less than nursing home care. It is still fairly expensive. Older people or ...

  9. A case study on co-exposure to a mixture of organic solvents in a Tunisian adhesive-producing company

    PubMed Central

    2011-01-01

    Objectives to assess environmental and biological monitoring of exposure to organic solvents in a glue-manufacturing company in Sfax, Tunisia. Methods Exposure of volunteer workers, in the solvented glue-work-stations, in the control laboratory and in the storage rooms of the finished products, was assessed through indoor-air and urine measurements. Informed consent of the workers was obtained. Results and discussion The exposure indexes were found with high values in the solvented workshop as well as in the control laboratory and were respectively, 8.40 and 3.12. These indexes were also correlated with hexane and toluene indoor air concentrations. As to urine, the obtained results for the 2,5-hexandione and hippuric acid, metabolites of hexane and toluene, respectively, were in accord with the indoor-air measurements, with an average of 0.46 mg/l and 1240 mg/g of creatinine. Conclusion This study assessed for the first time biological exposure to organic solvents used in Tunisian adhesive industries. Although values are likely to underestimate true exposure levels, some figures exceed European and American occupational exposure guidelines. PMID:22082240

  10. Hydrocarbons, the advanced biofuels produced by different organisms, the evidence that alkanes in petroleum can be renewable.

    PubMed

    Fu, Wen-Juan; Chi, Zhe; Ma, Zai-Chao; Zhou, Hai-Xiang; Liu, Guang-Lei; Lee, Ching-Fu; Chi, Zhen-Ming

    2015-09-01

    It is generally regarded that the petroleum cannot be renewable. However, in recent years, it has been found that many marine cyanobacteria, some eubacteria, engineered Escherichia coli, some endophytic fungi, engineered yeasts, some marine yeasts, plants, and insects can synthesize hydrocarbons with different carbon lengths. If the organisms, especially some native microorganisms and engineered bacteria and yeasts, can synthesize and secret a large amount of hydrocarbons within a short period, alkanes in the petroleum can be renewable. It has been documented that there are eight pathways for hydrocarbon biosynthesis in different organisms. Unfortunately, most of native microorganisms, engineered E. coli and engineered yeasts, only synthesize a small amount of intracellular and extracellular hydrocarbons. Recently, Aureobasidium pullulans var. melanogenum isolated from a mangrove ecosystem has been found to be able to synthesize and secret over 21.5 g/l long-chain hydrocarbons with a yield of 0.275 g/g glucose and a productivity of 0.193 g/l/h within 5 days. The yeast may have highly potential applications in alkane production. PMID:26231137

  11. Organ Facts

    MedlinePLUS

    ... Lung Kidney Pancreas Kidney/Pancreas Liver Intestine Organ Facts Here you can find valuable information about organs ... Camps for kids Contacting my donor family Data Facts about living donation Financing a transplant Matching organs ...

  12. The feasibility of a centralized biogas plant treating the manure produced by an organized animal farmers union in Turkey.

    PubMed

    Dereli, R K; Yangin-Gomec, C; Ozabali, A; Ozturk, I

    2012-01-01

    The aim of this study is to evaluate the feasibility and the energy recovery potential of mesophilic (30-35 °C) anaerobic digestion of animal wastes (manure) at a centralized biogas plant (CBP) for 35,000 cattle. The proposed CBP is composed of an equalization tank followed by pasteurization and 3+[1/2] modules; i.e. each module consists of four completely mixed anaerobic reactors with a capacity of treating the manure from 10,000 cattle. The effect of maize silage loading, as the co-substrate, both on biomethane production and feasibility of the system was also evaluated. Besides, the transport fuel substitutes of the produced biomethane with or without co-substrate were also investigated. Results of the proposed CBP indicated that biomethane production increased ca. 1.65 fold with co-substrate addition and pay-back periods for one module treating 10,000 cattle manure are calculated to be ca. 11 and 7.0 yr without and with silage addition, respectively. Besides, considering the potential revenue when replacing transport fuels, about 74 heavy goods vehicles or 1,560 cars may be powered per year by the biogas produced from the proposed CBP where the co-digestion of manure and maize silage is applied. PMID:22744686

  13. Evidence of infection with organisms producing Shiga-like toxins in household contacts of children with the hemolytic uremic syndrome.

    PubMed

    Lopez, E L; Diaz, M; Devoto, S; Grinstein, S; Woloj, M; Murray, B E; Rubeglio, E; Mendilaharzu, F; Turco, M; Vasquez, M

    1991-01-01

    We conducted a prospective study in 87 household contacts of 51 children with hemolytic uremic syndrome to determine the frequency of infection with Shiga-like toxin-producing bacteria. Gastrointestinal tract symptoms occurred in only 1 of 87 contacts. Free fecal toxin was detected in 25 of 64 (39%) of the household members. Neutralization with specific antisera to Shiga-like toxins I and II (SLT-I, SLT-II) revealed that in 6 of these household contacts only SLT-I was present in stool, in 10 only SLT-II was present and in 9 both toxins were found. Thirty-three percent of the hemolytic uremic syndrome families in which 2 or more members were studied had more than 1 household member with free fecal toxin in stool. None of the household contacts was found to have E. coli O157:H7 in feces. Serum samples were available in 77 household contacts; 75% (58 of 77) had serum neutralizing titers of greater than or equal to 1:4 to 1 or both toxins. In those contacts for whom paired sera were available, seroconversion was found in 10 of 24 (42%). These data show that household contacts of children with hemolytic uremic syndrome are commonly colonized with Shiga-like toxin-producing E. coli and seroconversion to Shiga-like toxins occurs frequently in family members of children with hemolytic uremic syndrome. PMID:2003052

  14. Potency of Melatonin in Living Beings

    PubMed Central

    Choi, Donchan

    2013-01-01

    Living beings are surrounded by various changes exhibiting periodical rhythms in environment. The environmental changes are imprinted in organisms in various pattern. The phenomena are believed to match the external signal with organisms in order to increase their survival rate. The signals are categorized into circadian, seasonal, and annual cycles. Among the cycles, the circadian rhythm is regarded as the most important factor because its periodicity is in harmony with the levels of melatonin secreted from pineal gland. Melatonin is produced by the absence of light and its presence displays darkness. Melatonin plays various roles in creatures. Therefore, this review is to introduce the diverse potential ability of melatonin in manifold aspects in living organism. PMID:25949131

  15. Phenolic compounds, organic acids and antioxidant activity of grape juices produced in industrial scale by different processes of maceration.

    PubMed

    Lima, Marcos dos Santos; da Conceição Prudêncio Dutra, Maria; Toaldo, Isabela Maia; Corrêa, Luiz Claudio; Pereira, Giuliano Elias; de Oliveira, Débora; Bordignon-Luiz, Marilde Terezinha; Ninow, Jorge Luiz

    2015-12-01

    The effect of maceration process on the profile of phenolic compounds, organic acids composition and antioxidant activity of grape juices from new varieties of Vitis labrusca L. obtained in industrial scale was investigated. The extraction process presented a high yield without pressing the grapes. The use of a commercial pectinase resulted in an increase on extraction yield and procyanidins B1 and B2 concentrations and a decrease on turbidity and concentration of catechins. The combination of 60 °C and 3.0 mL 100 kg(-1) of enzyme resulted in the highest extraction of phenolic compounds, reducing the content of acetic acid. The juices presented high antioxidant activity, related to the great concentration of malvidin, cyanidin, catechin and caffeic, cinnamic and gallic acids. Among the bioactive compounds, the juices presented high concentration of procyanidin B1, caffeic acid and trans-resveratrol, with higher levels compared to those reported in the literature. PMID:26041208

  16. 2D Time-lapse Resistivity Monitoring of an Organic Produced Gas Plume in a Landfill using ERT.

    NASA Astrophysics Data System (ADS)

    Amaral, N. D.; Mendonça, C. A.; Doherty, R.

    2014-12-01

    This project has the objective to study a landfill located on the margins of Tietê River, in São Paulo, Brazil, using the electroresistivity tomography method (ERT). Due to huge organic matter concentrations in the São Paulo Basin quaternary sediments, there is subsurface depth related biogas accumulation (CH4 and CO2), induced by anaerobic degradation of the organic matter. 2D resistivity sections were obtained from a test area since March 2012, a total of 7 databases, being the last one dated from October 2013. The studied line has the length of 56m, the electrode interval is of 2m. In addition, there are two boreholes along the line (one with 3 electrodes and the other one with 2) in order to improve data quality and precision. The boreholes also have a multi-level sampling system that indicates the fluid (gas or water) presence in relation to depth. With our results it was possible to map the gas plume position and its area of extension in the sections as it is a positive resistivity anomaly, with the gas level having approximately 5m depth. With the time-lapse analysis (Matlab script) between the obtained 2D resistivity sections from the site, it was possible to map how the biogas volume and position change in the landfill in relation to time. Our preliminary results show a preferential gas pathway through the subsurface studied area. A consistent relation between the gas depth and obtained microbiological data from archea and bacteria population was also observed.

  17. Nano-structured calcite produced by micro-organisms in ancient and modern loess in Chinese Loess Plateau

    NASA Astrophysics Data System (ADS)

    Xu, H.; Chen, T.; Lu, H.; Wang, X.

    2005-12-01

    The results from transmission electron microscopy (TEM) and field emission gun scanning microscopy (FEG-SEM) investigation show that there are calcite nano-fibers (CNFs) formed during pedogenic process. The CNFs are widely distributed in the loess and red clay samples of Caoxian, Luochuan, Lingtai, Lantian, and Xifeng profiles as well as the samples of modern surface loess soils in Chinese Loess Plateau. Diameters of all the NFCs are about 40 nm, the length of the CNFs ranges from tens nanometer to several micrometers. Elongation direction of NFCs is unusual near parallel (105)* or (115)*. Crystals of NFCs arrange as bird net like and lattice-like frameworks. X-ray EDS spectra show the weak peaks of magnesium, phosphorous, and sulfur. Our investigation indicates that CNFs are in pore space of loess and paleosol and made up most of carbonate except for caliche nodular layers. Concentration of NFCs in the loess layers are significantly higher than those of paleosol layers because of leaching of carbonate in the paleosol forming environment (warn and wet paleoclimate). The "nanobacteria-like CNFs are well crystalline calcite single crystals with smoothes surfaces. The morphologies of CNFs are very unusual and different from the calcite single crystals observed in most geological environments. The CNFs are directly related to microbial activities in both ancient and modern loess. It is proposed that the intervention of organic compounds derived from microbial activities control the formation of the calcite nano-fibers. Both morphology and bulk composition of CNFs indicate that the formation of the CNFs involves bio-organics derived from microorganisms in loess deposit environment. Formation conditions of the calcite nano-fibers may information about paleoclimate, paleo-environment and paleoecology. So, the discovery of CNFs in loess-paloesol sequences can provide a new route for reconstruct paleoclimate by oxygen and carbon isotope from the CNFs.

  18. Second-generation products contribute substantially to the particle-phase organic material produced by beta-caryophyllene ozonolysis

    NASA Astrophysics Data System (ADS)

    Li, Y. J.; Chen, Q.; Guzman, M. I.; Chan, C. K.; Martin, S. T.

    2011-01-01

    The production of secondary organic aerosol (SOA) by the dark ozonolysis of gas-phase ?-caryophyllene was studied. The experiments were conducted in a continuous-flow environmental chamber for organic particle mass concentrations of 0.5 to 30 ?g m-3 and with ozone in excess, thereby allowing the study of second-generation particle-phase products under atmospherically relevant conditions. The particle-phase products were characterized by an ultra-performance liquid chromatograph equipped with an electrospray ionization time-of-flight mass spectrometer (UPLC-ESI-ToF-MS). Fragmentation mass spectra were used for the structural elucidation of each product, and the structures were confirmed as consistent with the accurate m/z values of the parent ions. In total, fifteen products were identified. Of these, three are reported for the first time. The structures showed that 9 out of 15 particle-phase products were second generation, including all three of the new products. The relative abundance of the second-generation products was approximately 90% by mass among the 15 observed products. The O:C and H:C elemental ratios of the 15 products ranged from 0.13 to 0.50 and from 1.43 to 1.60, respectively. Fourteen of the products contained 3 to 5 oxygen atoms. A singular product, which was one of the three newly identified ones, had 7 oxygen atoms, including 1 carboxylic group, 2 carbonyl groups, and 3 hydroxyl groups. It was identified as 2, 3-dihydroxy-4-[2-(4-hydroxy-3-oxobutyl)-3, 3-dimethylcyclobutyl]-4-oxobutanoic acid (C14H22O7). The estimated saturation vapor pressure of this product is 3.3×10-13 Pa, making this product a candidate contributor to new particle formation in the atmosphere.

  19. Mutualistic fungal endophytes produce phytohormones and organic acids that promote japonica rice plant growth under prolonged heat stress*

    PubMed Central

    Waqas, Muhammad; Khan, Abdul Latif; Shahzad, Raheem; Ullah, Ihsan; Khan, Abdur Rahim; Lee, In-Jung

    2015-01-01

    This study identifies the potential role in heat-stress mitigation of phytohormones and other secondary metabolites produced by the endophytic fungus Paecilomyces formosus LWL1 in japonica rice cultivar Dongjin. The japonica rice was grown in controlled chamber conditions with and without P. formosus LWL1 under no stress (NS) and prolonged heat stress (HS) conditions. Endophytic association under NS and HS conditions significantly improved plant growth attributes, such as plant height, fresh weight, dry weight, and chlorophyll content. Furthermore, P. formosus LWL1 protected the rice plants from HS compared with controls, indicated by the lower endogenous level of stress-signaling compounds such as abscisic acid (25.71%) and jasmonic acid (34.57%) and the increase in total protein content (18.76%–33.22%). Such fungal endophytes may be helpful for sustainable crop production under high environmental temperatures. PMID:26642184

  20. Mutualistic fungal endophytes produce phytohormones and organic acids that promote japonica rice plant growth under prolonged heat stress.

    PubMed

    Waqas, Muhammad; Khan, Abdul Latif; Shahzad, Raheem; Ullah, Ihsan; Khan, Abdur Rahim; Lee, In-Jung

    2015-12-01

    This study identifies the potential role in heat-stress mitigation of phytohormones and other secondary metabolites produced by the endophytic fungus Paecilomyces formosus LWL1 in japonica rice cultivar Dongjin. The japonica rice was grown in controlled chamber conditions with and without P. formosus LWL1 under no stress (NS) and prolonged heat stress (HS) conditions. Endophytic association under NS and HS conditions significantly improved plant growth attributes, such as plant height, fresh weight, dry weight, and chlorophyll content. Furthermore, P. formosus LWL1 protected the rice plants from HS compared with controls, indicated by the lower endogenous level of stress-signaling compounds such as abscisic acid (25.71%) and jasmonic acid (34.57%) and the increase in total protein content (18.76%-33.22%). Such fungal endophytes may be helpful for sustainable crop production under high environmental temperatures. PMID:26642184

  1. Creating living machines

    PubMed Central

    Kamm, Roger D.; Bashir, Rashid

    2015-01-01

    Development of increasingly complex integrated cellular systems will be a major challenge for the next decade and beyond, as we apply the knowledge gained from the sub-disciplines of tissue engineering, synthetic biology, micro-fabrication and nanotechnology, systems biology, and developmental biology. In this prospective, we describe the current state-of-the-art in the context of differentiating source cells from more primitive, pluripotent cells, and organizing these cells into populations of a single cell type to produce the components or building blocks of higher order systems and finally, combining multiple cell types, possibly in combination with scaffolds possessing specific physical or chemical properties, to produce greater functionality. As these “living machines” increase in capabilities, exhibit emergent behavior and potentially reveal the ability for self-assembly, self-repair, and even self-replication, questions arise regarding the ethical implications of this work. Future prospects as well as ways of addressing these complex ethical questions will be addressed. PMID:24006130

  2. Chromophoric dissolved organic matter of black waters in a highly eutrophic Chinese lake: Freshly produced from algal scums?

    PubMed

    Zhou, Yongqiang; Jeppesen, Erik; Zhang, Yunlin; Niu, Cheng; Shi, Kun; Liu, Xiaohan; Zhu, Guangwei; Qin, Boqiang

    2015-12-15

    Field campaigns and an incubation experiment were conducted to evaluate the sources of chromophoric dissolved organic matter (CDOM) in black water spots in highly polluted regions of the Chinese Lake Taihu. A significant positive correlation (p<0.0001) was found between chlorophyll a (Chl-a) and the CDOM absorption coefficient a(350), indicating that algae degradation was likely the primary source of CDOM in black waters. This is supported by our field results that Chl-a, a(350) and the spectral slope ratio (SR) were significantly higher in the black water samples than in the regular samples (p<0.001). Our incubation experiment further substantiated the primary significance of biological CDOM source where a(350) increased with decreasing Chl-a concentrations. After seven days' incubation, a 72.2% decrease and a 74.9% increase were recorded for Chl-a and a(350), respectively, relative to the initial values. Parallel factor analysis identified five fluorescent components. The maximal fluorescence intensity (Fmax) of tryptophan-like C1 and microbial humic-like C3 of black water samples was significantly higher than in the regular water samples (p<0.0005). This is consistent with incubation experiment results showing a rapid increase in Fmax of the two components, emphasizing the priority of the in situ biological CDOM source in black water spots. PMID:26125526

  3. Farmers' valuation of incentives to produce genetically modified organism-free milk: Insights from a discrete choice experiment in Germany.

    PubMed

    Schreiner, J A; Latacz-Lohmann, U

    2015-11-01

    This paper investigates farmers' willingness to participate in a genetically modified organism (GMO)-free milk production scheme offered by some German dairy companies. The empirical analysis is based upon discrete choice experiments with 151 dairy farmers from 2 regions in Germany. A conditional logit estimation reveals a strong positive effect of the price premium on offer. Reliable feed monitoring and free technical support increase the likelihood of scheme adoption, the latter however only in farms that have been receiving technical support in other fields. By contrast, any interference with the entrepreneurial autonomy of farmers, through pre-arranged feed procurement or prescriptive advice on the part of the dairy company, lowers acceptance probabilities. Farmers' attitudes toward cultivation of genetically modified soy, their assessment of the market potential of GMO-free milk and future feed prices were found to be significant determinants of adoption, as are farmer age, educational status, and current feeding regimens. Respondents requested on average a mark-up of 0.80 eurocents per kilogram of milk to accept a contract. Comparison of the estimates for the 2 regions suggests that farmers in northern Germany are, on average, more likely to convert to genetically modified-free production; however, farmers in the south are, ceteris paribus, more responsive to an increase in the price premium offered. A latent class model reveals significant differences in the valuation of scheme attributes between 2 latent classes of adopters and nonadopters. PMID:26342979

  4. Trimethylamine and Organic Matter Additions Reverse Substrate Limitation Effects on the ?13C Values of Methane Produced in Hypersaline Microbial Mats.

    PubMed

    Kelley, Cheryl A; Nicholson, Brooke E; Beaudoin, Claire S; Detweiler, Angela M; Bebout, Brad M

    2014-12-01

    Methane production has been observed in a number of hypersaline environments, and it is generally thought that this methane is produced through the use of noncompetitive substrates, such as the methylamines, dimethylsulfide and methanol. Stable isotope measurements of the produced methane have also suggested that the methanogens are operating under conditions of substrate limitation. Here, substrate limitation in gypsum-hosted endoevaporite and soft-mat hypersaline environments was investigated by the addition of trimethylamine, a noncompetitive substrate for methanogenesis, and dried microbial mat, a source of natural organic matter. The ?(13)C values of the methane produced after amendments were compared to those in unamended control vials. At all hypersaline sites investigated, the ?(13)C values of the methane produced in the amended vials were statistically lower (by 10 to 71‰) than the unamended controls, supporting the hypothesis of substrate limitation at these sites. When substrates were added to the incubation vials, the methanogens within the vials fractionated carbon isotopes to a greater degree, resulting in the production of more (13)C-depleted methane. Trimethylamine-amended samples produced lower methane ?(13)C values than the mat-amended samples. This difference in the ?(13)C values between the two types of amendments could be due to differences in isotope fractionation associated with the dominant methane production pathway (or substrate used) within the vials, with trimethylamine being the main substrate used in the trimethylamine-amended vials. It is hypothesized that increased natural organic matter in the mat-amended vials would increase fermentation rates, leading to higher H2 concentrations and increased CO2/H2 methanogenesis. PMID:25239903

  5. Trimethylamine and Organic Matter Additions Reverse Substrate Limitation Effects on the δ13C Values of Methane Produced in Hypersaline Microbial Mats

    PubMed Central

    Nicholson, Brooke E.; Beaudoin, Claire S.; Detweiler, Angela M.; Bebout, Brad M.

    2014-01-01

    Methane production has been observed in a number of hypersaline environments, and it is generally thought that this methane is produced through the use of noncompetitive substrates, such as the methylamines, dimethylsulfide and methanol. Stable isotope measurements of the produced methane have also suggested that the methanogens are operating under conditions of substrate limitation. Here, substrate limitation in gypsum-hosted endoevaporite and soft-mat hypersaline environments was investigated by the addition of trimethylamine, a noncompetitive substrate for methanogenesis, and dried microbial mat, a source of natural organic matter. The δ13C values of the methane produced after amendments were compared to those in unamended control vials. At all hypersaline sites investigated, the δ13C values of the methane produced in the amended vials were statistically lower (by 10 to 71‰) than the unamended controls, supporting the hypothesis of substrate limitation at these sites. When substrates were added to the incubation vials, the methanogens within the vials fractionated carbon isotopes to a greater degree, resulting in the production of more 13C-depleted methane. Trimethylamine-amended samples produced lower methane δ13C values than the mat-amended samples. This difference in the δ13C values between the two types of amendments could be due to differences in isotope fractionation associated with the dominant methane production pathway (or substrate used) within the vials, with trimethylamine being the main substrate used in the trimethylamine-amended vials. It is hypothesized that increased natural organic matter in the mat-amended vials would increase fermentation rates, leading to higher H2 concentrations and increased CO2/H2 methanogenesis. PMID:25239903

  6. The Effects of Trimethylamine and Organic Matter Additions on the Stable Carbon Isotopic Composition of Methane Produced in Hypersaline Microbial Mat Environments

    NASA Astrophysics Data System (ADS)

    Kelley, C. A.; Nicholson, B. E.; Beaudoin, C. S.; Detweiler, A. M.; Bebout, B.

    2014-12-01

    Methane production has been observed in a number of hypersaline environments, and it is generally thought that this methane is produced through the use of non-competitive substrates, such as the methylamines, methanol and dimethylsulfide. The stable carbon isotopic composition of the produced methane has suggested that the methanogens are operating under conditions of substrate limitation. We investigated substrate limitation in gypsum-hosted endoevaporite and soft mat hypersaline environments by the additions of trimethylamine, a non-competitive substrate for methanogenesis, and dried microbial mat, a source of natural organic matter. The ?13C values of the methane produced after amendments were compared to those in unamended control vials. At all hypersaline sites investigated, the ?13C values of the methane produced in the amended vials were statistically lower (by 10 to 71 ‰) than the unamended controls, supporting the hypothesis of substrate limitation at these sites. When substrates were added to the incubation vials, the methanogens within the vials fractionated carbon isotopes to a greater degree, resulting in the production of more 13C-depleted methane. Trimethylamine-amended samples produced lower methane ?13C values than the mat-amended samples. This difference in the ?13C values between the two types of amendments could be due to differences in isotope fractionation associated with the dominant methane production pathway (or substrate used) within the vials, with trimethylamine being the main substrate used in the trimethylamine-amended vials. We hypothesize that increased natural organic matter in the mat-amended vials would increase fermentation rates, leading to higher H2 concentrations and increased CO2/H2 methanogenesis.

  7. Organization of the biosynthetic genes encoding deoxyactagardine B (DAB), a new lantibiotic produced by Actinoplanes liguriae NCIMB41362.

    PubMed

    Boakes, Steven; Appleyard, Antony N; Cortés, Jesús; Dawson, Michael J

    2010-07-01

    Deoxyactagardine B (DAB) is a hitherto unknown type B lantibiotic, produced by Actinoplanes liguriae NCIMB41362. The mature peptide is 19 amino acids in length and structurally analogous to actagardine, differing by two amino acids (V15L and I16V) and the absence of a sulfoxide bond between residues 14 and 19. The biosynthetic genes encoding DAB are clustered, and in addition to the structural gene ligA include genes believed to encode for the proteins responsible for the modification, transport and regulation of DAB synthesis. Surprisingly, despite the presence of a gene that shares significant homology to the monooxygenase garO from the actagardine biosynthetic gene cluster, the oxidized form of DAB has not been detected. A lanA gene encoding the DAB peptide has been introduced into the plasmid pAGvarX and delivered into a strain of Actinoplanes garbadinensis lacking the structural gene for actagardine, garA (A. garbadinensis DeltagarA). Expression of this gene in A. garbadinensis DeltagarA resulted in the production of actagardine B, an oxidized form of DAB. PMID:20520597

  8. Estimation of nasal shedding and seroprevalence of organisms known to be associated with bovine respiratory disease in Australian live export cattle.

    PubMed

    Moore, S Jo; O'Dea, Mark A; Perkins, Nigel; O'Hara, Amanda J

    2015-01-01

    The prevalence of organisms known to be associated with bovine respiratory disease (BRD) was investigated in cattle prior to export. A quantitative reverse transcription polymerase chain reaction assay was used to detect nucleic acids from the following viruses and bacteria in nasal swab samples: Bovine coronavirus (BoCV; Betacoronavirus 1), Bovine herpesvirus 1 (BoHV-1), Bovine viral diarrhea virus 1 (BVDV-1), Bovine respiratory syncytial virus (BRSV), Bovine parainfluenza virus 3 (BPIV-3), Histophilus somni, Mycoplasma bovis, Mannheimia haemolytica, and Pasteurella multocida. Between 2010 and 2012, nasal swabs were collected from 1,484 apparently healthy cattle destined for export to the Middle East and Russian Federation. In addition, whole blood samples from 334 animals were tested for antibodies to BoHV-1, BRSV, BVDV-1, and BPIV-3 using enzyme-linked immunosorbent assay. The nasal prevalence of BoCV at the individual animal level was 40.1%. The nasal and seroprevalence of BoHV-1, BRSV, BVDV-1, and BPIV-3 was 1.0% and 39%, 1.2% and 46%, 3.0% and 56%, and 1.4% and 87%, respectively. The nasal prevalence of H. somni, M. bovis, M. haemolytica, and P. multocida was 42%, 4.8%, 13.4%, and 26%, respectively. Significant differences in nasal and seroprevalence were detected between groups of animals from different geographical locations. The results of the current study provide baseline data on the prevalence of organisms associated with BRD in Australian live export cattle in the preassembly period. This data could be used to develop strategies for BRD prevention and control prior to loading. PMID:25525134

  9. Implanted biofuel cell operating in a living snail.

    PubMed

    Halámková, Lenka; Halámek, Jan; Bocharova, Vera; Szczupak, Alon; Alfonta, Lital; Katz, Evgeny

    2012-03-21

    Implantable biofuel cells have been suggested as sustainable micropower sources operating in living organisms, but such bioelectronic systems are still exotic and very challenging to design. Very few examples of abiotic and enzyme-based biofuel cells operating in animals in vivo have been reported. Implantation of biocatalytic electrodes and extraction of electrical power from small living creatures is even more difficult and has not been achieved to date. Here we report on the first implanted biofuel cell continuously operating in a snail and producing electrical power over a long period of time using physiologically produced glucose as a fuel. The "electrified" snail, being a biotechnological living "device", was able to regenerate glucose consumed by biocatalytic electrodes, upon appropriate feeding and relaxing, and then produce a new "portion" of electrical energy. The snail with the implanted biofuel cell will be able to operate in a natural environment, producing sustainable electrical micropower for activating various bioelectronic devices. PMID:22401501

  10. Impacts of Organic and Conventional Crop Management on Diversity and Activity of Free-Living Nitrogen Fixing Bacteria and Total Bacteria Are Subsidiary to Temporal Effects

    PubMed Central

    Orr, Caroline H.; Leifert, Carlo; Cummings, Stephen P.; Cooper, Julia M.

    2012-01-01

    A three year field study (2007–2009) of the diversity and numbers of the total and metabolically active free-living diazotophic bacteria and total bacterial communities in organic and conventionally managed agricultural soil was conducted using the Nafferton Factorial Systems Comparison (NFSC) study, in northeast England. Fertility management appeared to have little impact on both diazotrophic and total bacterial communities. However, copy numbers of the nifH gene did appear to be negatively impacted by conventional crop protection measures across all years suggesting diazotrophs may be particularly sensitive to pesticides. Impacts of crop management were greatly overshadowed by the influence of temporal effects with diazotrophic communities changing on a year by year basis and from season to season. Quantitative analyses using qPCR of each community indicated that metabolically active diazotrophs were highest in year 1 but the population significantly declined in year 2 before recovering somewhat in the final year. The total bacterial population in contrast increased significantly each year. It appeared that the dominant drivers of qualitative and quantitative changes in both communities were annual and seasonal effects. Moreover, regression analyses showed activity of both communities was significantly affected by soil temperature and climatic conditions. PMID:23285218

  11. Successful rescue of disseminated varicella infection with multiple organ failure in a pediatric living donor liver transplant recipient: a case report and literature review.

    PubMed

    Yamada, Naoya; Sanada, Yukihiro; Okada, Noriki; Wakiya, Taiichi; Ihara, Yoshiyuki; Urahashi, Taizen; Mizuta, Koichi

    2015-01-01

    A 12-year-old female patient with biliary atresia underwent living donor liver transplantation (LDLT). Twelve months after the LDLT, she developed acute hepatitis (alanine aminotransferase 584 IU/L) and was diagnosed with disseminated varicella-zoster virus (VZV) infection with high level of serum VZV-DNA (1.5?×?10(5) copies/mL) and generalized vesicular rash. She had received the VZV vaccination when she was 5-years-old and had not been exposed to chicken pox before the LDLT, and her serum was positive for VZV immunoglobulin G at the time of the LDLT. Although she underwent treatment with intravenous acyclovir, intravenous immunoglobulin, and withdrawal of immunosuppressants, her symptoms worsened and were accompanied by disseminated intravascular coagulation, pneumonia, and encephalitis. These complications required treatment in the intensive care unit for 16 days. Five weeks later, her clinical findings improved, although her VZV-DNA levels remained high (8.5?×?10(3)copies/mL). Oral acyclovir was added for 2 weeks, and she was eventually discharged from our hospital on day 86 after admission; she has not experienced a recurrence. In conclusion, although disseminated VZV infection with multiple organ failure after pediatric LDLT is a life-threatening disease, it can be cured via an early diagnosis and intensive treatment. PMID:26081644

  12. Engineering living functional materials.

    PubMed

    Chen, Allen Y; Zhong, Chao; Lu, Timothy K

    2015-01-16

    Natural materials, such as bone, integrate living cells composed of organic molecules together with inorganic components. This enables combinations of functionalities, such as mechanical strength and the ability to regenerate and remodel, which are not present in existing synthetic materials. Taking a cue from nature, we propose that engineered 'living functional materials' and 'living materials synthesis platforms' that incorporate both living systems and inorganic components could transform the performance and the manufacturing of materials. As a proof-of-concept, we recently demonstrated that synthetic gene circuits in Escherichia coli enabled biofilms to be both a functional material in its own right and a materials-synthesis platform. To demonstrate the former, we engineered E. coli biofilms into a chemical-inducer-responsive electrical switch. To demonstrate the latter, we engineered E. coli biofilms to dynamically organize biotic-abiotic materials across multiple length scales, template gold nanorods, gold nanowires, and metal/semiconductor heterostructures, and synthesize semiconductor nanoparticles (Chen, A. Y. et al. (2014) Synthesis and patterning of tunable multiscale materials with engineered cells. Nat. Mater. 13, 515-523.). Thus, tools from synthetic biology, such as those for artificial gene regulation, can be used to engineer the spatiotemporal characteristics of living systems and to interface living systems with inorganic materials. Such hybrids can possess novel properties enabled by living cells while retaining desirable functionalities of inorganic systems. These systems, as living functional materials and as living materials foundries, would provide a radically different paradigm of materials performance and synthesis-materials possessing multifunctional, self-healing, adaptable, and evolvable properties that are created and organized in a distributed, bottom-up, autonomously assembled, and environmentally sustainable manner. PMID:25592034

  13. Engineering Living Functional Materials

    PubMed Central

    2016-01-01

    Natural materials, such as bone, integrate living cells composed of organic molecules together with inorganic components. This enables combinations of functionalities, such as mechanical strength and the ability to regenerate and remodel, which are not present in existing synthetic materials. Taking a cue from nature, we propose that engineered ‘living functional materials’ and ‘living materials synthesis platforms’ that incorporate both living systems and inorganic components could transform the performance and the manufacturing of materials. As a proof-of-concept, we recently demonstrated that synthetic gene circuits in Escherichia coli enabled biofilms to be both a functional material in its own right and a materials-synthesis platform. To demonstrate the former, we engineered E. coli biofilms into a chemical-inducer-responsive electrical switch. To demonstrate the latter, we engineered E. coli biofilms to dynamically organize biotic-abiotic materials across multiple length scales, template gold nanorods, gold nanowires, and metal/semiconductor heterostructures, and synthesize semiconductor nanoparticles (Chen, A. Y. et al. (2014) Synthesis and patterning of tunable multiscale materials with engineered cells. Nat. Mater.13, 515–523.). Thus, tools from synthetic biology, such as those for artificial gene regulation, can be used to engineer the spatiotemporal characteristics of living systems and to interface living systems with inorganic materials. Such hybrids can possess novel properties enabled by living cells while retaining desirable functionalities of inorganic systems. These systems, as living functional materials and as living materials foundries, would provide a radically different paradigm of materials performance and synthesis–materials possessing multifunctional, self-healing, adaptable, and evolvable properties that are created and organized in a distributed, bottom-up, autonomously assembled, and environmentally sustainable manner. PMID:25592034

  14. Synthesis and characterization of hybrid nanostructures produced in the presence of the titanium dioxide and bioactive organic substances by hydrothermal method

    SciTech Connect

    Zima, Tatyana; Baklanova, Natalya; Bataev, Ivan

    2013-02-15

    Hybrid nanostructures produced by hydrothermal treatment of TiO{sub 2} in the presence of bioactive organic substances such as chitosan, aminoterephthalic acid and their mixture have been investigated. Sodium polytitanates as one-dimensional elongated structures with lengths of several hundred of nanometers were obtained in the presence of chitosan and aminoterephthalic acid. With chitosan the elongated nanostructures are formed by successive superposition of structural fragments-nanostrips with well-ordered multilayered morphology and increased distance between successive layers to 1.2 nm. Quite different amorphous products as agglomerates with roundest and rhomboid morphology are formed when the mixture of chitosan and aminoterephthalic acid is added to the reaction system. One can propose that main reason of such behavior is a low rate of diffusion of dissolved Ti(IV) ions in the high viscous mixed chitosan-aminoterephthalic system. An effect of organic substances on the formation, morphology and transformation of various titanates is discussed. - Graphical abstract: The typical images of hybrid nanostructures produced by hydrothermal treatment of TiO{sub 2} in the presence chitosan and mixed chitosan with aminoterephthalic acid. Highlights: Black-Right-Pointing-Pointer Various shapes of TiO{sub 2} based structures can be produced in the presence of organic. Black-Right-Pointing-Pointer An addition of chitosan results in the formation of the elongated nanostructures. Black-Right-Pointing-Pointer These structures have multilayered morphology and increased distance between layers. Black-Right-Pointing-Pointer Different agglomerates are formed when chitosan and aminoterephthalic acid are mixed.

  15. Organics.

    ERIC Educational Resources Information Center

    Chian, Edward S. K.; DeWalle, Foppe B.

    1978-01-01

    Presents water analysis literature for 1978. This review is concerned with organics, and it covers: (1) detergents and surfactants; (2) aliphatic and aromatic hydrocarbons; (3) pesticides and chlorinated hydrocarbons; and (4) naturally occurring organics. A list of 208 references is also presented. (HM)

  16. Control of the Biofilms Formed by Curli- and Cellulose-Expressing Shiga Toxin-Producing Escherichia coli Using Treatments with Organic Acids and Commercial Sanitizers.

    PubMed

    Park, Yoen Ju; Chen, Jinru

    2015-05-01

    Biofilms are a mixture of bacteria and extracellular products secreted by bacterial cells and are of great concern to the food industry because they offer physical, mechanical, and biological protection to bacterial cells. This study was conducted to quantify biofilms formed by different Shiga toxin-producing Escherichia coli (STEC) strains on polystyrene and stainless steel surfaces and to determine the effectiveness of sanitizing treatments in control of these biofilms. STEC producing various amounts of cellulose (n = 6) or curli (n = 6) were allowed to develop biofilms on polystyrene and stainless steel surfaces at 28°C for 7 days. The biofilms were treated with 2% acetic or lactic acid and manufacturer-recommended concentrations of acidic or alkaline sanitizers, and residual biofilms were quantified. Treatments with the acidic and alkaline sanitizers were more effective than those with the organic acids for removing the biofilms. Compared with their counterparts, cells expressing a greater amount of cellulose or curli formed more biofilm mass and had greater residual mass after sanitizing treatments on polystyrene than on stainless steel. Research suggests that the organic acids and sanitizers used in the present study differed in their ability to control biofilms. Bacterial surface components and cell contact surfaces can influence both biofilm formation and the efficacy of sanitizing treatments. These results provide additional information on control of biofilms formed by STEC. PMID:25951395

  17. Effects of long-term irrigation with treated wastewater on soil quality, soil-borne pathogens, and living organisms: case study of the vicinity of El Hajeb (Tunisia).

    PubMed

    Hentati, Olfa; Chaker, Sana; Wali, Ahmed; Ayoub, Tarek; Ksibi, Mohamed

    2014-05-01

    Medium (i.e. 15 years) and long-term (i.e. 20 years) impact of irrigation using secondary-treated municipal wastewater (TWW) was assessed on two agricultural soil samples, denoted by E and G, respectively, in the vicinity of El Hajeb region (Southern Tunisia). Soil pH, electrical conductivity particle size grading, potential risk of salinity, water holding capacity and chemical composition, as well as organic matter content, pathogenic microorganisms and heavy metal concentrations in the TWW-irrigated (E and G) and rainwater-irrigated (T) soils at various depths, were monitored and compared during a 5-year experiment. Our study showed that bacterial abundance is higher in sandy-clayey soil, which has an enhanced ability to retain moisture and nutrients. The high level of bacterial flora in TWW-irrigated soils was significantly (p < 0.05) correlated (r = ~0.5) with the high level of OM. Avoidance assays have been used to assess toxic effects generated by hazards in soils. The earthworms gradually avoided the soils from the surface (20 cm) to the depth (60 cm) of the G transect and then the E transect, preferring the T transect. The same behaviour was observed for springtails, but they seem to be less sensitive to the living conditions in transects G and E than the earthworms. The avoidance response test of Eisenia andrei was statistically correlated with soil layers at the sampling sites. However, the avoidance response test of Folsomia candida was positively correlated with silt-clay content (+0.744*) and was negatively correlated with sand content (-0.744*). PMID:24362513

  18. Pathogenesis and treatment of lesions caused by sulfur mustard: Inflammatory mediators and modulators released from organ-cultured inflammatory lesions produced in vivo in rabbit skin by sulfur mustard. Annual report, September 1983-October 1984

    SciTech Connect

    Dannenberg, A.M.; Vogt, F.

    1985-11-01

    This Annual Report presents the first phase of work on the inflammatory mediators and modulators of sulfur mustard (SM) lesions. Developing and healing SM lesions were produced in the skin of rabbits and organ cultured. During the 3-day period of culture, the explants survived well and even began to heal. Quantitative histological studies showed that almost all of the polymophonuclear leukocytes (PMN) in the lesions had disappeared by 3 days of culture, whereas over half the basophils and mononuclear cells still remained. This is the first evidence, to our knowledge, that basophils are rather long lived. Normal skin and healing SM lesions gained weight in culture. Peak SM lesions lost weight in culture. We believe that the gel-sol state of inflammatory lesions can be monitored by simply measuring their weight after culture, because the weight loss was probably due to the leaching out of the solubilized ground substance. Serum, which contains both proinflammatory and antiinflammatory components, is present in large amounts in the edematous peak lesions and slowly decreases during healing. Our studies proved that, contrary to what is written in textbooks, edema fluid in acute inflammatory lesions is not static, waiting to be absorbed by the lymphatics, but is being replaced three times each day. This constant influx of fresh serum enables it to play a major role in the control of the inflammatory process.

  19. Ash leachates from some recent eruptions of Mount Etna (Italy) and Popocatépetl (Mexico) volcanoes and their impact on amphibian living freshwater organisms

    NASA Astrophysics Data System (ADS)

    D'Addabbo, M.; Sulpizio, R.; Guidi, M.; Capitani, G.; Mantecca, P.; Zanchetta, G.

    2015-08-01

    Leaching experiments were carried out on fresh ash samples from Popocatépetl 2012, Etna 2011 and 2012 eruptions, in order to investigate the release of compounds in both double-deionised and lake (Ohrid lake, FYR of Macedonia) waters. The experiments were carried out using different grain sizes and variable time of stirring (from 30 min to 7 days). Results were discussed in the light of changing pH and release of compounds for the different leachates. In particular, Etna samples induced alkalinisation and Popocatépetl samples induced acidification of the corresponding leachates. The release of different elements does not show correlation with time of stirring, with the measured maximum concentrations reached in the first hours of washing. General inverse correlation with grain size was observed only for Na+, K+, Cl-, Ca2+, Mg2+, SO42-, and Mn2+, while the other analysed elements show complex, scattering relationship with grain size. Geochemical modelling highlights leachates saturation only for F and Si, with Popocatépetl samples sometimes showing saturation in Fe. The analysed leachates are classified as undrinkable for humans on the basis of Italian laws, due to excess in F-, Mn2+, Fe, and SO42- (the latter only for Popocatépetl samples). Finally, the Etna 2012 and Popocatépetl leachates were used for toxicity experiments on living biota (Xenopus laevis). They are mild toxic, and no significant differences exist between the toxic profiles of the two leachates. In particular, no significant embryo mortality was observed, while even at high dilutions the leachates produced more than 20 % of malformed larvae.

  20. Ash leachates from some recent eruptions of Mount Etna (Italy) and Popocatépetl (Mexico) volcanoes and their impact on amphibian living freshwater organisms

    NASA Astrophysics Data System (ADS)

    D'Addabbo, M.; Sulpizio, R.; Guidi, M.; Capitani, G.; Mantecca, P.; Zanchetta, G.

    2015-12-01

    Leaching experiments were carried out on fresh ash samples from Popocatépetl 2012, Etna 2011, and Etna 2012 eruptions, in order to investigate the release of compounds in both double-deionized and lake (Lake Ohrid, FYR of Macedonia) waters. The experiments were carried out using different grain sizes and variable stirring times (from 30 min to 7 days). Results were discussed in the light of changing pH and release of compounds for the different leachates. In particular, Etna samples induced alkalinization, and Popocatépetl samples induced acidification of the corresponding leachates. The release of different elements does not show correlation with the stirring time, with the measured maximum concentrations reached in the first hours of washing. General inverse correlation with grain size was observed only for Na+, K+, Cl-, Ca2+, Mg2+, SO42-, and Mn2+, while the other analysed elements show a complex, scattering relationship with grain size. Geochemical modelling highlights leachates' saturation only for F and Si, with Popocatépetl samples sometimes showing saturation in Fe. The analysed leachates are classified as undrinkable for humans on the basis of European laws, due to excess in F-, Mn2+, Fe, and SO42- (the latter only for Popocatépetl samples). Finally, the Etna 2012 and Popocatépetl leachates were used for toxicity experiments on living biota (Xenopus laevis). They are mildly toxic, and no significant differences exist between the toxic profiles of the two leachates. In particular, no significant embryo mortality was observed; while even at high dilutions, the leachates produced more than 20 % of malformed larvae.

  1. Service Priorities and Unmet Service Needs Among People Living with HIV/AIDS: Results from a Nationwide Interview of HIV/AIDS Housing Organizations

    PubMed Central

    Lennon, Carter A.; White, Angela C.; Finitsis, David; Pishori, Alefiyah; Hernandez, Dominica; Kelly, David M.; Pellowski, Jennifer A.; Kalichman, Seth C.; Turcios-Cotto, Viana; Overstreet, Nicole M.; Kane, Sister Ann; Lanouette, Gertrude A.

    2014-01-01

    Housing for people living with HIV/AIDS has been linked to a number of positive physical and mental health outcomes, in addition to decreased sexual and drug-related risk behavior. The current study identified service priorities for people living with HIV/AIDS, services provided by HIV/AIDS housing agencies, and unmet service needs for people living with HIV/AIDS through a nationwide telephone survey of HIV/AIDS housing agencies in the United States. Housing, alcohol/drug treatment, and mental health services were identified as the three highest priorities for people living with HIV/AIDS and assistance finding employment, dental care, vocational assistance, and mental health services were the top needs not being met. Differences by geographical region were also examined. Findings indicate that while housing affords people living with HIV/AIDS access to services, there are still areas (e.g., mental health services) where gaps in linkages to care exist. PMID:23305552

  2. Xpert CARBA-R Assay for the Detection of Carbapenemase-Producing Organisms in Intensive Care Unit Patients of a Korean Tertiary Care Hospital.

    PubMed

    Kim, Do Kyun; Kim, Hyoung Sun; Pinto, Naina; Jeon, Jongsoo; D'Souza, Roshan; Kim, Myung Sook; Choi, Jun Yong; Yong, Dongeun; Jeong, Seok Hoon; Lee, Kyungwon

    2016-03-01

    Carbapenemase-producing organisms (CPO) are rapidly disseminating worldwide, and their presence in tertiary care hospitals poses a significant threat to the management of nosocomial infections. There is a need to control CPO, especially in intensive care unit (ICU) patients, because these organisms are resistant to most β-lactam antibiotics and are easily transmitted. At present, the identification of CPO is time-consuming; hence, this study focused on the use of the Xpert CARBA-R assay (Cepheid, USA) to determine intestinal colonization rates of CPO in patients admitted to the ICU of a tertiary care hospital in Korea. Forty clinical stool samples were collected and inoculated both in a CARBA-R cartridge and in conventional culture plates. The CARBA-R assay required only ~one hour to screen CPO, while the time required for conventional culture was over three days. We also found that the prevalences of intestinal colonization by carbapenem-resistant organisms and Enterobacteriaceae were 17.5% (7 out of 40) and 7.5% (3 out of 40), respectively. Among the colonizing strains, three that contained carbapenemase, including Klebsiella pneumonia carbapenemase (KPC), and imipenem (IMP) and Verona integron-mediated metallo-β-lactamase (VIM) were found. With its convenience, the Xpert CARBA-R assay can be included in CPO surveillance strategies. PMID:26709264

  3. Fair society, healthy lives.

    PubMed

    Marmot, M; Bell, R

    2012-09-01

    The final report of the World Health Organization Commission on the Social Determinants of Health (CSDH), published in 2008, affirmed that social injustice was killing on a grand scale, with a toxic combination of 'poor social policies and programmes, unfair economic arrangements, and bad politics' being responsible for producing and reinforcing health inequalities. It provided a comprehensive evidence-based discussion of pervasive inequalities of health in many countries, demonstrating the presence of a social gradient in health outcomes associated with the unfair distribution of the social determinants of health. The social determinants of health include the conditions in which people are born, grow, live, work and age, and the fundamental drivers of these conditions: the distribution of power; money; and resources. Following publication of the CSDH report and recommendations for action, the UK Government commissioned a Strategic Review of Health Inequalities in England. This article provides an overview and reflection on the findings from the CSDH and the Strategic Review of Health Inequalities in England, reviewing the case for putting fairness at the heart of all policy making. In the process, it highlights the need for action on the social determinants of health in order to address health inequalities and the social gradient in health outcomes. PMID:22784581

  4. Bachelor Living

    ERIC Educational Resources Information Center

    Germer, Sondra

    1974-01-01

    Male high school students in a Bachelor Living Class observed methods of child care including bottle feeding, spoon feeding, changing diapers, and method of holding. The purpose was for the students to grasp a better understanding of child development. (EK)

  5. Living Laboratories

    ERIC Educational Resources Information Center

    Mules, B. R.

    1976-01-01

    Presented is a review of various methods of keeping live animals, including scorpions, spiders, crabs, crayfish, shrimp, ants, fish, mice, and birds, as well as plants as a school science project/display. (SL)

  6. Assisted Living

    MedlinePLUS

    ... programs Personal laundry services Social and recreational activities Personal care in assisted living typically includes: Staff available ... today pay for long-term care from their personal financial resources, 41 states offer "home and community- ...

  7. Assisted Living

    MedlinePLUS

    ... Recreational activities Security Transportation How to Choose a Facility A good match between a facility and a resident's needs depends as much on the philosophy and services of the assisted living facility as it does on the quality of care. ...

  8. Living or Nonliving?

    ERIC Educational Resources Information Center

    Legaspi, Britt; Straits, William

    2011-01-01

    Categorizing organisms as living or nonliving things may seem to be intuitive by nature. Yet, it is regulated by scientific criteria. Students come to school with rules already in place. Their categorizing criteria have already been influenced by their personal experiences, also known as observations and inferences. They believe that all things…

  9. Family Living Supplement.

    ERIC Educational Resources Information Center

    Truitt, Debbie

    This family living supplement contains 125 supplemental ideas and strategies designed to help vocational home economics teachers increase student motivation and enrich the teaching process. Ideas and strategies are organized into seven sections. These are career planning, securing a job, and career success; managing financial resources, buying…

  10. Dementia and Assisted Living

    ERIC Educational Resources Information Center

    Hyde, Joan; Perez, Rosa; Forester, Brent

    2007-01-01

    Purpose: This article presents an overview of what is known about dementia services in assisted living settings and suggests areas for future research. Design and Methods: We undertook a search of Medline, the "Journals of Gerontology," and "The Gerontologist." We then organized publications dealing with the target subject into 10 topic areas and…

  11. Learning from Live Theater

    ERIC Educational Resources Information Center

    Greene, Jay P.; Hitt, Collin; Kraybill, Anne; Bogulski, Cari A.

    2015-01-01

    Culturally enriching field trips matter. They produce significant benefits for students on a variety of educational outcomes that schools and communities care about. This experiment on the effects of field trips to see live theater demonstrates that seeing plays is an effective way to teach academic content; increases student tolerance by…

  12. Learning from Live Theater

    ERIC Educational Resources Information Center

    Greene, Jay P.; Hitt, Collin; Kraybill, Anne; Bogulski, Cari A.

    2015-01-01

    Culturally enriching field trips matter. They produce significant benefits for students on a variety of educational outcomes that schools and communities care about. This experiment on the effects of field trips to see live theater demonstrates that seeing plays is an effective way to teach academic content; increases student tolerance by…

  13. Identifying inhibitory effects of lignocellulosic by-products on growth of lactic acid producing micro-organisms using a rapid small-scale screening method.

    PubMed

    van der Pol, Edwin C; Vaessen, Evelien; Weusthuis, Ruud A; Eggink, Gerrit

    2016-06-01

    Sugars obtained from pretreated lignocellulose are interesting as substrate for the production of lactic acid in fermentation processes. However, by-products formed during pretreatment of lignocellulose can inhibit microbial growth. In this study, a small-scale rapid screening method was used to identify inhibitory effects of single and combined by-products on growth of lactic acid producing micro-organisms. The small-scale screening was performed in 48-well plates using 5 bacterial species and 12 by-products. Large differences were observed in inhibitory effects of by-products between different species. Predictions can be made for growth behaviour of different micro-organisms on acid pretreated or alkaline pretreated bagasse substrates using data from the small-scale screening. Both individual and combined inhibition effects were shown to be important parameters to predict growth. Synergy between coumaric acid, formic acid and acetic acid is a key inhibitory parameter in alkaline pretreated lignocellulose, while furfural is a key inhibitor in acid pretreated lignocellulose. PMID:26990397

  14. A new physiological role for Pdr12p in Saccharomyces cerevisiae: export of aromatic and branched-chain organic acids produced in amino acid catabolism.

    PubMed

    Hazelwood, Lucie A; Tai, Siew Leng; Boer, Viktor M; de Winde, Johannes H; Pronk, Jack T; Daran, Jean Marc

    2006-09-01

    Saccharomyces cerevisiae can use a broad range of compounds as sole nitrogen source. Many amino acids, such as leucine, tyrosine, phenylalanine and methionine, a