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Sample records for major rice ecosystems

  1. Understanding ecosystem services provided by rice fields

    Technology Transfer Automated Retrieval System (TEKTRAN)

    While the concept of ecosystem services is not new, there is revived interest in how these services should be measured, monitored, and valued. Focused research over the last four years has provided insight into the mitigation capabilities of rice fields in the lower Mississippi River Valley of the ...

  2. Understanding the nature of methane emission from rice ecosystems as basis of mitigation strategies

    SciTech Connect

    Buendia, L.V.; Neue, H.U.; Wassmann, R.

    1996-12-31

    Methane is considered as an important Greenhouse gas and rice fields are one of the major atmospheric methane sources. The paper aims to develop sampling strategies and formulate mitigation options based on diel (day and night) and seasonal pattern of methane emission. The study was conducted in 4 countries to measure methane flux using an automatic closed chamber system. A 24-hour bihourly methane emissions were continuously obtained during the whole growing season. Daily and seasonal pattern of methane fluxes from different rice ecosystems were evaluated. Diel pattern of methane emission from irrigated rice fields, in all sites, displayed similar pattern from planting to flowering. Fluxes at 0600, 1200, and 1800 h were important components of the total diel flux. A proposed sampling frequency to accurately estimate methane emission within the growing season was designed based on the magnitude of daily flux variation. Total methane emission from different ecosystems follow the order: deepwater rice > irrigated rice > rainfed rice. Application of pig manure increased total emission by 10 times of that without manure. Green manure application increased emission by 49% of that applied only with inorganic fertilizer. Removal of floodwater at 10 DAP and 35 DAP, within a period of 4 days, inhibited production and emission of methane. The level of variation in daily methane emission and seasonal emission pattern provides useful information for accurate determination of methane fluxes. Characterization of seasonal emission pattern as to ecologies, fertilizer amendments, and water management gives an idea of where to focus mitigation strategies for sustainable rice production.

  3. Dissipation and residue of pymetrozine in rice field ecosystem.

    PubMed

    Zhang, Yanfeng; Zhang, Li; Xu, Peng; Li, Jianzhong; Wang, Huili

    2015-03-01

    The dissipation and residue of pymetrozine in rice field ecosystem were studied based on a novel and reliable analytical method for pymetrozine in paddy water, soil, rice straw, brown rice, and rice husk. The pymetrozine residues were extracted with acetonitrile and cleaned up by Carb-NH2 SPE cartridge and determined by high-performance liquid chromatography electrospray ionization tandem mass spectrometry (LC-ESI-MS-MS). The dissipation of pymetrozine followed first-order kinetics and its half-lives ranged from 1.7 to 1.8 days in paddy water, 5.1 to 5.7 days in soil, and 2.3 to 2.6 days in rice straw, respectively. At harvest time, the highest final residues of pymetrozine varied in soil among three geographical fields and were below the limit of detection in rice tissues. The recommended dosage was considered to be safe for human beings and animals, and the results were helpful in setting maximum residue limit for pymetrozine in rice. PMID:25655126

  4. Transgenic Bacillus thuringiensis (Bt) Rice Is Safer to Aquatic Ecosystems than Its Non-Transgenic Counterpart

    PubMed Central

    Li, Guangsheng; Wang, Yongmo; Liu, Biao; Zhang, Guoan

    2014-01-01

    Rice lines genetically modified with the crystal toxin genes from Bacillus thuringiensis (Bt) have experienced rapid development, with biosafety certificates for two Bt rice lines issued in 2009. There has still been no commercial release of these lines yet due to public concerns about human health and environmental risks. Some studies confirmed that Bt rice was as safe as conventional rice to non-target organisms when pesticides were not applied, however, pesticides are still required in Bt rice to control non-lepidopteran pests. In this study, we assessed the environmental effects of two Bt rice lines expressing either the cry1Ab/1Ac or cry2A genes, respectively, by using zooplanktons as indicator species under normal field management practices using pesticides when required. In the whole rice growing season, non-Bt rice was sprayed 5 times while Bt rice was sprayed 2 times, which ensured both rice achieved a normal yield. Field investigations showed that rice type (Bt and non-Bt) significantly influenced zooplankton abundance and diversity, which were up to 95% and 80% lower in non-Bt rice fields than Bt rice fields. Laboratory rearing showed that water from non-Bt rice fields was significantly less suitable for the survival and reproduction of Daphnia magna and Paramecium caudatum in comparison with water from Bt rice fields. Higher pesticide residues were detected in the water from non-Bt than Bt rice fields, accounting for the bad performance of zooplankton in non-Bt field water. Our results demonstrate that Bt rice is safer to aquatic ecosystems than non-Bt rice, and its commercialization will be beneficial for biodiversity restoration in rice-based ecosystems. PMID:25105299

  5. Transgenic Bacillus thuringiensis (Bt) rice is safer to aquatic ecosystems than its non-transgenic counterpart.

    PubMed

    Li, Guangsheng; Wang, Yongmo; Liu, Biao; Zhang, Guoan

    2014-01-01

    Rice lines genetically modified with the crystal toxin genes from Bacillus thuringiensis (Bt) have experienced rapid development, with biosafety certificates for two Bt rice lines issued in 2009. There has still been no commercial release of these lines yet due to public concerns about human health and environmental risks. Some studies confirmed that Bt rice was as safe as conventional rice to non-target organisms when pesticides were not applied, however, pesticides are still required in Bt rice to control non-lepidopteran pests. In this study, we assessed the environmental effects of two Bt rice lines expressing either the cry1Ab/1Ac or cry2A genes, respectively, by using zooplanktons as indicator species under normal field management practices using pesticides when required. In the whole rice growing season, non-Bt rice was sprayed 5 times while Bt rice was sprayed 2 times, which ensured both rice achieved a normal yield. Field investigations showed that rice type (Bt and non-Bt) significantly influenced zooplankton abundance and diversity, which were up to 95% and 80% lower in non-Bt rice fields than Bt rice fields. Laboratory rearing showed that water from non-Bt rice fields was significantly less suitable for the survival and reproduction of Daphnia magna and Paramecium caudatum in comparison with water from Bt rice fields. Higher pesticide residues were detected in the water from non-Bt than Bt rice fields, accounting for the bad performance of zooplankton in non-Bt field water. Our results demonstrate that Bt rice is safer to aquatic ecosystems than non-Bt rice, and its commercialization will be beneficial for biodiversity restoration in rice-based ecosystems. PMID:25105299

  6. Influence of the Asian monsoon on net ecosystem carbon exchange in two major ecosystems in Korea

    NASA Astrophysics Data System (ADS)

    Kwon, H.; Kim, J.; Hong, J.; Lim, J.-H.

    2010-05-01

    Considering the feedback in radiation, temperature, and soil moisture with alterations in rainfall patterns, the influence of the changing monsoon on Net Ecosystem CO2 Exchange (NEE) can be critical to the estimation of carbon balance in Asia. In this paper, we examined CO2 fluxes measured by the eddy covariance method from 2004 to 2008 in two major ecosystems in the KoFlux sites in Korea, i.e., the Gwangneung Deciduous forest (GDK) and the Haenam Farmland (HFK). Our objectives were to identify the repeatability of the mid-season depression of NEE encountered at the two sites based on the single-year observation, and to further scrutinize its cause, effect, and interannual variability by using multi-year observations. In both GDK and HFK sites, the mid-season depression of NEE was reproduced each year but with different timing, magnitude, and mechanism. At the GDK site, a predominant factor causing the mid-season depression was a decreased solar radiation and the consequent reduction in Gross Primary Productivity (GPP) during the summer monsoon period. At the HFK site, however, the monsoonal effect was less pronounced and the apparent mid-season depression was mainly a result of the management practices such as cultivation of spring barley and rice transplantation. Other flux observation sites in East Asia also showed a decline in radiation but with a lesser degree during the monsoon season, resulting in less pronounced depression in NEE. In our study, the observed depressions in NEE caused both GDK and HFK sites to become a weaker carbon sink or even a source in the middle of the growing season. On average, the GDK site (with maximum leaf area index of ~5) was a weak carbon sink with NEE of -84 gC m-2 y-1. Despite about 20% larger GPP (of 1321 gC m-2y-1) in comparison with the GDK site, the HFK site (with maximum leaf area index of 3-4) was a weaker carbon sink with NEE of -58 gC m-2 y-1 because of greater ecosystem respiration (of 1263 gC m-2 y-1). These NEE

  7. Dynamics of immature stages of Anopheles arabiensis and other mosquito species (Diptera: Culicidae) in relation to rice cropping in a rice agro-ecosystem in Kenya.

    PubMed

    Mwangangi, Joseph; Shililu, Josephat; Muturi, Ephantus; Gu, Weidong; Mbogo, Charles; Kabiru, Ephantus; Jacob, Benjamin; Githure, John; Novak, Robert

    2006-12-01

    We determined changes in species composition and densities of immature stages of Anopheles arabiensis mosquitoes in relation to rice growth cycle in order to generate data for developing larval control strategies in rice ecosystems. Experimental rice paddies (6.3m x 3.15m) exposed to natural colonization of mosquitoes were sampled weekly for two rice growing cycles between February 2004 and March 2005. Overall, 21,325 Anopheles larvae were collected, of which 91.9% were 1st and 2nd instars and 8.1% were 3rd and 4th instars. An. arabiensis was the predominant species (84.1%) with other species, An. pharoensis (13.5%), An. funestus (2.1%), An. coustani (0.3%), and An. maculipalpis (0.1%) accounting for only a small proportion of the anophelines collected. Culex quinquefasciatus (65.7%) was the predominant species among the non-anopheline species. Others species collected included: C. annulioris (9.9%), C. poicilipes (7.3%), C. tigripes (7.2%), C. duttoni (0.6%), Aedes aegypti (5.3%), Ae. cumminsii (3.5%), and Ae. vittatus (0.7%). The densities of the major anopheline species were closely related to rice stage and condition of the rice field. An. arabiensis, the predominant species, was most abundant over a three-week period after transplanting. Low densities of larvae were collected during the late vegetative, reproductive, and ripening phases of rice. An increase in larval density ten days post-transplanting was found to correlate with the application of fertilizer (sulphate of ammonia). Culicine and aedine species densities were significantly higher during the post-harvesting period. Our results suggest that the transplanting stage is favorable for the growth of immature stages of An. arabiensis and provides a narrow window for targeted larval intervention in rice. PMID:17249341

  8. Using the DayCent Ecosystem Model to Predict Methane Emissions from Wetland Rice Production in Support for Mitigation Efforts

    NASA Astrophysics Data System (ADS)

    Ogle, S. M.; Parton, W. J.; Cheng, K.; Pan, G.

    2014-12-01

    Wetland rice production is a major source of greenhouse gas (GHG) emissions to the atmosphere, and rice production is predicted to increase dramatically in the future due to expected growth in human populations. Mitigating GHG emissions from future rice production is possible with best management practices for water management, residue management and organic amendments. Policy initiatives and programs that promote practices to reduce GHG emissions from rice production will likely need robust methods for quantifying emission reductions. Frameworks based on process-based model provide one alternative for estimating emissions reductions. The advantages of this approach are that the models are relatively inexpensive to apply, incorporate a variety of management and environmental drivers influencing emissions, and can be used to predict future emissions for planning purposes. The disadvantages are that the models can be challenging to parameterize and evaluate, and require a relatively large amount of data. The DayCent ecosystem model simulates plant and soil processes, and is an example of a model that could be used to quantify emission reductions for reporting mitigation activities associated with rice production systems. DayCent estimates methane emissions, which is the major source of GHG emissions from wetland rice, but also estimates nitrous oxide emissions and soil organic C stock changes. DayCent has been evaluated using data from China, explaining 83% of the variation in methane emissions from 72 experimental rice fields. In addition, DayCent has been applied regionally in the United States to estimate methane, nitrous oxide emissions, and soil C stock changes, in compliance with the guidelines for reporting GHG emissions to the UN Framework Convention on Climate Change. Given the cost of alternatives, process-based models such as DayCent may offer the best way forward for estimating GHG emissions from rice production, and with quantification of uncertainty

  9. Modeling impacts of water and fertilizer management on the ecosystem service of rice rotated cropping system in China

    NASA Astrophysics Data System (ADS)

    Chen, H.; Yu, C.; Li, C.

    2015-12-01

    Sustainable agricultural intensification demand optimum resource managements of agro-ecosystems. Detailed information on the impacts of water use and nutrient application on agro-ecosystem services including crop yields, greenhouse gas (GHG) emissions and nitrogen (N) loss is the key to guide field managements. In this study, we use the DeNitrification-DeComposition (DNDC) model to simulate the biogeochemical processes for rice rotated cropping systems in China. We set varied scenarios of water use in more than 1600 counties, and derived optimal rates of N application for each county in accordance to water use scenarios. Our results suggest that 0.88 ± 0.33 Tg per year (mean ± standard deviation) of synthetic N could be reduced without reducing rice yields, which accounts for 15.7 ± 5.9% of current N application in China. Field managements with shallow flooding and optimal N applications could enhance ecosystem services on a national scale, leading to 34.3% reduction of GHG emissions (CH4, N2O, and CO2), 2.8% reduction of overall N loss (NH3 volatilization, denitrification and N leaching) and 1.7% increase of rice yields, as compared to current management conditions. Among provinces with major rice production, Jiangsu, Yunnan, Guizhou, and Hubei could achieve more than 40% reduction of GHG emissions under appropriate water managements, while Zhejiang, Guangdong, and Fujian could reduce more than 30% N loss with optimal N applications. Our modeling efforts suggest that China is likely to benefit from reforming water and fertilization managements for rice rotated cropping system in terms of sustainable crop yields, GHG emission mitigation and N loss reduction, and the reformation should be prioritized in the above-mentioned provinces. Keywords: water regime, nitrogen fertilization, sustainable management, ecological modeling, DNDC

  10. Field evaluation of rice varieties for resistance to major diseases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The development and use of improved disease resistant rice varieties remains of foremost importance to rice producers, with field evaluation under local environments essential. In this study, we evaluated new and existing varieties, potential releases, and Texas elite breeding lines for resistance t...

  11. Tracing the allocation of water in rainfed rice ecosystem by partitioning evapotranspiration of rainfed rice (Oryza Sativa L.)

    NASA Astrophysics Data System (ADS)

    Nay-Htoon, Bhone; Dubbert, Maren; Wei, Xue; Cuntz, Matthias; Ko, Jonghan; Tenhunen, John; Werner, Christiane

    2015-04-01

    To understand productive and unproductive water use of crop production, partitioning evapotranspiration (ET ) into evaporation (E) and transpiration (T ) is important. Water movements within the eco-hydrologic cycle of agroecosystems can be traced by stable oxygen isotopes of water (δ18O) and plant transpiration and soil evaporation can also be estimated by tracing the δ18O. We quantified the contribution of transpiration to total ecosystem evapotranspiration of rainfed rice field by a stable oxygen isotope approach and FAO 56 dual crop modelling approach. Our study aims to provide quantification of ecosystem water cycle of rainfed rice by partitioning productive and unproductive water use since productivity and water use of rice which is a highly water demanding agroecosystem, is under intense research. Crop season total evapotranspiration fluxes from rainfed rice was mainly dominated by transpiration (T to ET contribution (T /ET ) = 65%) and domination of transpiration over evaporation fluxes was noted since early vegetative stage (Leaf Area Index = 0.8 m2 m-2) until harvesting. T /ET of rainfed rice fluctuated with changes in soil water content (SWC) and the highest T /ET was found at SWC of 0.34 m3 m-3, during seedling stage. Our results demonstrate that partitioning ET by FAO 56 dual crop model is in a good agreement with δ18O isotope based ET partitioning results. Using monthly mean values of leaf resistance and vegetation index derived crop coefficients instead of original fixed parameters of the FAO 56 dual crop model resulted better agreement with δ18O isotope based ET partitioning.

  12. Study of mosquito fauna in rice ecosystems around Hanoi, northern Vietnam.

    PubMed

    Ohba, Shin-ya; Van Soai, Nguyen; Van Anh, Dinh Thi; Nguyen, Yen T; Takagi, Masahiro

    2015-02-01

    mosquito ecology and strengthen mosquito control strategies to be applied in rice ecosystems Vietnam in the future. PMID:25445747

  13. Residues of cyantraniliprole and its metabolite J9Z38 in rice field ecosystem.

    PubMed

    Zhang, Changpeng; Hu, Xiuqing; Zhao, Hua; Wu, Min; He, Hongmei; Zhang, Chunrong; Tang, Tao; Ping, Lifeng; Li, Zhen

    2013-09-01

    A simple and reliable analytical method was developed to detect cyantraniliprole (HGW86) and its metabolite J9Z38 in rice straw, paddy water, brown rice, and paddy soil. The fate of cyantraniliprole and its metabolite J9Z38 in rice field ecosystem was also studied. The target compounds were extracted using acetonitrile, cleaned up on silicagel or strong anion exchange column, and analyzed by ultra-performance liquid chromatography-tandem mass spectrometry. The average recoveries of cyantraniliprole and J9Z38 in rice straw, paddy water, brown rice, and paddy soil ranged from 79.0% to 108.6%, with relative standard deviations of 1.1-10.6%. The limits of quantification of cyantraniliprole and J9Z38 were 18 and 39μgkg(-1) for rice straw, 2.8 and 5.0μgkg(-1) for paddy water, 4.3 and 6.3μgkg(-1) for brown rice, and 3.9 and 5.3μgkg(-1) for paddy soil. The trial results showed that the half-lives of cyantraniliprole were 3.2, 4.4, and 6.3d in rice straw and 4.9, 2.0, and 6.2d in paddy water in Zhejiang, Hunan, and Shandong, respectively. The respective final residues of cyantraniliprole and J9Z38 in brown rice were lower than 0.05 and 0.02mgkg(-1) after 14d of pre-harvest interval. The maximum residue limit of cyantraniliprole at 0.1mgkg(-1) and dosage of 100g a.i.hm(-2), which could be considered safe to human beings and animals, were recommended. PMID:23800585

  14. Evaluating health of paddy rice field ecosystem with remote sensing and GIS in Lower Yangtze River Plain, China

    NASA Astrophysics Data System (ADS)

    Li, Jingjing; Qin, Zhihao; Li, Wenjuan; Lin, Lu

    2008-10-01

    A paddy rice ecosystem is a farming system composed of paddy, animals, microbes and other environmental factors in specific time and space, with particular temporal and spatial dynamics. Since paddy rice is a main grain crop to feed above half of population in China, the performance of paddy rice ecosystem is highly concerned to yield level of paddy and food supply safety in China. Therefore, monitoring the performance of paddy rice ecosystem is very important to obtain the required information for evaluation of ecosystem health. In the study we intend to develop an approach to monitor the ecosystem performance spatially and dynamically in a regional scale using MODIS remote sensing data and GIS spatial mapping. On the basis of key factors governing the paddy rice ecosystem, we accordingly develop the following three indicators for the evaluation: Crop growing index (CGI), environmental Index (EI), and pests-diseases index (PDI). Then, we integrated the three indicators into a model with different weight coefficients to calculate Comprehensive ecosystem health index (CEHI) to evaluate the performance and functioning of paddy rice ecosystem in a regional scale. CGI indicates the health status of paddy rice calculated from the normalizing enhanced vegetation Index (EVI) retrieved from MODIS data. EI is estimated from temperature Index (TI) and precipitation Index (PI) indicating heat and water stress on the rice field. PDI reflects the damage brought by pests and diseases, which can be estimated using the information obtained from governmental websites. Applying the approach to Lower Yangtze River Plain, we monitor and evaluate the performance of paddy rice ecosystem in various stages of rice growing period in 2006. The results indicated that the performance of the ecosystem was generally very encouraging. During booting stage and heading and blooming stage, the health level was the highest in Anhui province, which is the main paddy rice producer in the region

  15. Degradation kinetics of the insecticide spinetoram in a rice field ecosystem.

    PubMed

    Zhao, Li; Chen, Guo; Zhao, Jian; Zhang, Yan; Zhu, Yong; Yang, Ting; Wu, Yin-Liang

    2015-01-01

    The fate of spinetoram was studied in a rice field ecosystem, and an efficient method for the determination of spinetoram (XDE-175-J and XDE-175-L) in soil, rice straw, paddy water, husk and brown rice was developed. Spinetoram residues were extracted from samples with a salting out extraction procedure. The extracts were diluted with 0.10% formic acid in water and analysed with liquid chromatography tandem mass spectrometry (LC-MS/MS) on a Waters Acquity BEH C18 column. The calibration curve was linear in the range 0.125-100 μg L(-1) and r>0.999. The average recovery was 82.9-89.0% from soil, 78.5-92.1% from rice straw, 93.6-100.3% from paddy water, 79.1-87.9% from brown rice and 72.7-82.9% from husk. The relative standard deviation (RSD) was less than 10%. These results are all within the accepted range for pesticide residue determination. The field test results showed that spinetoram degradation in paddy water, soil and rice straw coincided with C=0.0132e(-1.9685t), C=0.0308e(-0.1018t) and C=0.8530e(-0.6223t), respectively. The half-lives of spinetoram in paddy water, soil and rice straw were 0.35, 6.8 and 1.1 d, respectively. The final residue level was lower than the maximum residue limit (MRL) of 0.05 mg kg(-1) for spinetoram in rice with a harvest interval of 7d. A dosage of 450 mL ha(-1) was recommended, which can be considered safe for human beings and animals. The results of this study will contribute to establishing the scientific basis of the dosage of spinetoram for agricultural fields. PMID:25460760

  16. Identification of major rice allergen and their clinical significance in children

    PubMed Central

    Jeon, You Hoon; Oh, Se Jo; Yang, Hyeon Jong; Lee, Soo Young

    2011-01-01

    Purpose Recently, an increase in the number of patients sensitized to rice allergen with or without clinical symptoms has been reported. This study was designed to determine the major allergens in rice and their clinical significance. Methods Twenty-four children (15 boys and 9 girls; mean age, 16.3 months) with allergic disease, who were sensitized to rice antigen (by UniCAP) in the Pediatric Allergy Respiratory Center at Soonchunhyang University Hospital, were enrolled in this study. The allergenicity of various types of rice (raw, cooked, and heat-treated, simulated gastric fluid [SGF], and simulated intestinal fluid [SIF]) was investigated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and immunoglobulin E (IgE) immunoblots. The patients' medical records, including laboratory data and allergy symptoms after ingestion of rice were reviewed. Results Patients were sensitized to an average of 13.5 food antigens and their mean total IgE was 6,888.7 kU/L. In SDS-PAGE, more than 16 protein bands were observed in the raw rice, whereas only 14-16 kDa and 31-35 kDa protein bands were observed in cooked rice. The common SDS-PAGE protein bands observed in SGF-, SIF-, and heat-treated rice were 9, 14, and 31 kDa. In a heated-rice IgE immunoblot, protein bands of 9, 14, and 31-33 kDa were found in 27.8%, 38.9%, and 38.9% of all sera, respectively, and in 50%, 50%, and 75%, of ser a from the 4 symptomatic patients, respectively. Conclusion The 9-, 14-, and 31-kDa protein bands appeared to be the major allergens responsible for rice allergy symptoms. PMID:22232624

  17. Major ecosystems in China: dynamics and challenges for sustainable management.

    PubMed

    Lü, Yihe; Fu, Bojie; Wei, Wei; Yu, Xiubo; Sun, Ranhao

    2011-07-01

    Ecosystems, though impacted by global environmental change, can also contribute to the adaptation and mitigation of such large scale changes. Therefore, sustainable ecosystem management is crucial in reaching a sustainable future for the biosphere. Based on the published literature and publicly accessible data, this paper discussed the status and trends of forest, grassland, and wetland ecosystems in China that play important roles in the ecological integrity and human welfare of the nation. Ecological degradation has been observed in these ecosystems at various levels and geographic locations. Biophysical (e.g., climate change) and socioeconomic factors (e.g., intensive human use) are the main reasons for ecosystem degradation with the latter factors serving as the dominant driving forces. The three broad categories of ecosystems in China have partially recovered from degradation thanks to large scale ecological restoration projects implemented in the last few decades. China, as the largest and most populated developing nation, still faces huge challenges regarding ecosystem management in a changing and globalizing world. To further improve ecosystem management in China, four recommendations were proposed, including: (1) advance ecosystem management towards an application-oriented, multidisciplinary science; (2) establish a well-functioning national ecological monitoring and data sharing mechanism; (3) develop impact and effectiveness assessment approaches for policies, plans, and ecological restoration projects; and (4) promote legal and institutional innovations to balance the intrinsic needs of ecological and socioeconomic systems. Any change in China's ecosystem management approach towards a more sustainable one will benefit the whole world. Therefore, international collaborations on ecological and environmental issues need to be expanded. PMID:21553106

  18. Characterization of rice (Oryza sativa L.) genotypes on the basis of morpho-physiological and biochemical traits grown under aerobic situation in rainfed ecosystem .

    PubMed

    Kumar, Santosh; Dwivedi, Sharad Kumar; Singh, S S; Kumar, Sanjeev; Sundaram, R K; Shivani; Mall, A K

    2015-07-01

    The objective of the present study was to examine the effect of aerobic situation on yield, physiological and biochemical traits of advanced breeding lines of rice. Experiment was conducted with two set of rice genotypes under two water regimes (aerobic and irrigated), during three consecutive wet seasons 2010-2012. Significant decrease in yield was observed in rice genotypes grown under aerobic situation as compared to the irrigated ones. Promising rice genotypes having the ability to maintain high plant biomass, harvest index, early vegetative vigour, improved physiological and biochemical traits in terms of relative water content (RWC), leaf area index (LAI), total soluble sugar, starch, protien and proline content help to sustain higher grain yield under aerobic situation. The yield gap between aerobic and irrigated rice ranged between 24% to 68%. Grain yield showed positive correlation with harvest index (0.434), test weight (0.647), plant biomass (0.411) and effective tiller numbers (0.473), whereas spikelet sterility was negative associated (-0.380). The current study suggested that promising genotypes viz., IR77298-14-1-2-130-2, IR84899-B-182-3-1-1-2, IR84887-B-157-38-1-1-3 and IR 84899-B-179-1-1-1-2 for aerobic situation, showing yield advantage due to better performance of physiological and biochemical traits, might be adopted in large area of rainfed ecosystem as well as in irrigated areas where water scarcity was a major problem. PMID:26364481

  19. Overexpression of BSR1 confers broad-spectrum resistance against two bacterial diseases and two major fungal diseases in rice.

    PubMed

    Maeda, Satoru; Hayashi, Nagao; Sasaya, Takahide; Mori, Masaki

    2016-06-01

    Broad-spectrum disease resistance against two or more types of pathogen species is desirable for crop improvement. In rice, Xanthomonas oryzae pv. oryzae (Xoo), the causal bacteria of rice leaf blight, and Magnaporthe oryzae, the fungal pathogen causing rice blast, are two of the most devastating pathogens. We identified the rice BROAD-SPECTRUM RESISTANCE 1 (BSR1) gene for a BIK1-like receptor-like cytoplasmic kinase using the FOX hunting system, and demonstrated that BSR1-overexpressing (OX) rice showed strong resistance to the bacterial pathogen, Xoo and the fungal pathogen, M. oryzae. Here, we report that BSR1-OX rice showed extended resistance against two other different races of Xoo, and to at least one other race of M. oryzae. In addition, the rice showed resistance to another bacterial species, Burkholderia glumae, which causes bacterial seedling rot and bacterial grain rot, and to Cochliobolus miyabeanus, another fungal species causing brown spot. Furthermore, BSR1-OX rice showed slight resistance to rice stripe disease, a major viral disease caused by rice stripe virus. Thus, we demonstrated that BSR1-OX rice shows remarkable broad-spectrum resistance to at least two major bacterial species and two major fungal species, and slight resistance to one viral pathogen. PMID:27436950

  20. Overexpression of BSR1 confers broad-spectrum resistance against two bacterial diseases and two major fungal diseases in rice

    PubMed Central

    Maeda, Satoru; Hayashi, Nagao; Sasaya, Takahide; Mori, Masaki

    2016-01-01

    Broad-spectrum disease resistance against two or more types of pathogen species is desirable for crop improvement. In rice, Xanthomonas oryzae pv. oryzae (Xoo), the causal bacteria of rice leaf blight, and Magnaporthe oryzae, the fungal pathogen causing rice blast, are two of the most devastating pathogens. We identified the rice BROAD-SPECTRUM RESISTANCE 1 (BSR1) gene for a BIK1-like receptor-like cytoplasmic kinase using the FOX hunting system, and demonstrated that BSR1-overexpressing (OX) rice showed strong resistance to the bacterial pathogen, Xoo and the fungal pathogen, M. oryzae. Here, we report that BSR1-OX rice showed extended resistance against two other different races of Xoo, and to at least one other race of M. oryzae. In addition, the rice showed resistance to another bacterial species, Burkholderia glumae, which causes bacterial seedling rot and bacterial grain rot, and to Cochliobolus miyabeanus, another fungal species causing brown spot. Furthermore, BSR1-OX rice showed slight resistance to rice stripe disease, a major viral disease caused by rice stripe virus. Thus, we demonstrated that BSR1-OX rice shows remarkable broad-spectrum resistance to at least two major bacterial species and two major fungal species, and slight resistance to one viral pathogen. PMID:27436950

  1. Investigating temperature effects on methane production and oxidation in the rice ecosystem using stable carbon and hydrogen isotope ratios

    NASA Astrophysics Data System (ADS)

    Rice, A. L.; Sithole, A.; Shearer, M. J.; Hanson, E.; Fisher, A.; Khalil, A. K.

    2010-12-01

    Irrigated rice is a major agricultural source of methane emissions that contributes about 15% of global atmospheric methane (CH4). Our work investigates the relationships between temperature and CH4 production, oxidation, and flux in the rice ecosystem. This is central to understanding the response of the global CH4 emissions from rice under a changing climate. Temperatures were regulated in sixteen rice plots grown in a research greenhouse using four waterbath-temperature control systems held at 20°C, 24°C, 28°C, and 32°C over the course of a growing season. Belowground porewater samples were collected from each treatment weekly and CH4 was extracted into headspace N2 after vigorous shaking. Weekly flux samples were collected using acrylic static flux chambers placed over the rice plots. CH4 concentrations below and aboveground were measured using gas chromatography-flame ionization detection. The carbon (δ13C) and hydrogen (δD) isotopic composition of CH4 was measured using continuous-flow gas chromatography isotope ratio mass spectrometry. Results show that CH4 flux ranged from near zero to 30-60 mg/m2/hr in mid-season corresponding to a rise in porewater CH4 to 8-12 mg/L. Early season CH4 fluxes were larger in elevated temperature treatments but this difference was smaller, or even reversed in some cases, in the late season. Similar trends were observed in CH4 porewater concentration profiles. Results from isotopic measurements show mean belowground δ13C values between -44‰ and -52‰ relative to VPDB and δD values between -290‰ and -320‰ relative to VSMOW. Emitted CH4 had mean δ13C values which ranged from -50‰ to -60‰ VPDB. We integrate these results and interpret them using an empirically-driven concentration and isotope model to understand CH4 dynamics and to examine the effect of temperature on mechanisms that control CH4 emissions.

  2. Major QTLs control resistance to rice hoja blanca virus and its vector Tagosodes orizicolus.

    PubMed

    Romero, Luz E; Lozano, Ivan; Garavito, Andrea; Carabali, Silvio J; Triana, Monica; Villareal, Natalia; Reyes, Luis; Duque, Myriam C; Martinez, César P; Calvert, Lee; Lorieux, Mathias

    2014-01-01

    Rice hoja blanca (white leaf) disease can cause severe yield losses in rice in the Americas. The disease is caused by the rice hoja blanca virus (RHBV), which is transmitted by the planthopper vector Tagosodes orizicolus. Because classical breeding schemes for this disease rely on expensive, time-consuming screenings, there is a need for alternatives such as marker-aided selection. The varieties Fedearroz 2000 and Fedearroz 50, which are resistant to RHBV and to the feeding damage caused by T. orizicolus, were crossed with the susceptible line WC366 to produce segregating F2:3 populations. The F3 families were scored for their resistance level to RHBV and T. orizicolus. The F2:3 lines of both crosses were genotyped using microsatellite markers. One major QTL on the short arm of chromosome 4 was identified for resistance to RHBV in the two populations. Two major QTL on chromosomes 5 and 7 were identified for resistance to T. orizicolus in the Fd2000 × WC366 and Fd50 × WC366 crosses, respectively. This comparative study using two distinct rice populations allowed for a better understanding of how the resistance to RHBV and its vector are controlled genetically. Simple marker-aided breeding schemes based on QTL information can be designed to improve rice germplasm to reduce losses caused by this important disease. PMID:24240781

  3. Major QTLs Control Resistance to Rice Hoja Blanca Virus and Its Vector Tagosodes orizicolus

    PubMed Central

    Romero, Luz E.; Lozano, Ivan; Garavito, Andrea; Carabali, Silvio J.; Triana, Monica; Villareal, Natalia; Reyes, Luis; Duque, Myriam C.; Martinez, César P.; Calvert, Lee; Lorieux, Mathias

    2013-01-01

    Rice hoja blanca (white leaf) disease can cause severe yield losses in rice in the Americas. The disease is caused by the rice hoja blanca virus (RHBV), which is transmitted by the planthopper vector Tagosodes orizicolus. Because classical breeding schemes for this disease rely on expensive, time-consuming screenings, there is a need for alternatives such as marker-aided selection. The varieties Fedearroz 2000 and Fedearroz 50, which are resistant to RHBV and to the feeding damage caused by T. orizicolus, were crossed with the susceptible line WC366 to produce segregating F2:3 populations. The F3 families were scored for their resistance level to RHBV and T. orizicolus. The F2:3 lines of both crosses were genotyped using microsatellite markers. One major QTL on the short arm of chromosome 4 was identified for resistance to RHBV in the two populations. Two major QTL on chromosomes 5 and 7 were identified for resistance to T. orizicolus in the Fd2000 × WC366 and Fd50 × WC366 crosses, respectively. This comparative study using two distinct rice populations allowed for a better understanding of how the resistance to RHBV and its vector are controlled genetically. Simple marker-aided breeding schemes based on QTL information can be designed to improve rice germplasm to reduce losses caused by this important disease. PMID:24240781

  4. New insight for two major rice blast R genes: Pi-ta and Pi-km

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In rice breeding programs across the world, the introgression of major resistance (R) genes remains the most cost-effective method to control blast epidemics caused by the fungal pathogen Magnaporthe oryzae. During the last two years, we have examined two loci, on chromosome 12 and 11, which harbor ...

  5. A Major Ecosystem Shift in the Northern Bering Sea

    NASA Astrophysics Data System (ADS)

    Grebmeier, Jacqueline M.; Overland, James E.; Moore, Sue E.; Farley, Ed V.; Carmack, Eddy C.; Cooper, Lee W.; Frey, Karen E.; Helle, John H.; McLaughlin, Fiona A.; McNutt, S. Lyn

    2006-03-01

    Until recently, northern Bering Sea ecosystems were characterized by extensive seasonal sea ice cover, high water column and sediment carbon production, and tight pelagic-benthic coupling of organic production. Here, we show that these ecosystems are shifting away from these characteristics. Changes in biological communities are contemporaneous with shifts in regional atmospheric and hydrographic forcing. In the past decade, geographic displacement of marine mammal population distributions has coincided with a reduction of benthic prey populations, an increase in pelagic fish, a reduction in sea ice, and an increase in air and ocean temperatures. These changes now observed on the shallow shelf of the northern Bering Sea should be expected to affect a much broader portion of the Pacific-influenced sector of the Arctic Ocean.

  6. Rice ingestion is a major pathway for human exposure to organophosphate flame retardants (OPFRs) in China.

    PubMed

    Zhang, Xingli; Zou, Wei; Mu, Li; Chen, Yuming; Ren, Chaoxiu; Hu, Xiangang; Zhou, Qixing

    2016-11-15

    Although organophosphate flame retardants (OPFRs) have been shown to accumulate in abiotic and biotic environmental compartments, data about OPFRs concentrations in various foods are limited and are none in humans through diets. In this work, the concentrations of 6 typical OPFRs were investigated in 50 rice samples, 75 commonly consumed foods and 45 human hair samples from China. The dietary intakes of OPFRs for adult people via food ingestion were estimated. The concentrations of ΣOPFRs in foods ranged from 0.004ng/g to 287ng/g. OPFRs were detected in 53.3% of the human hair samples. The highest OPFRs concentrations were found in rice and vegetables. Tri(2-chloroethyl)phosphate(TCEP), tris(2-chloroisopropyl)phosphate(TCIPP), and tri(2-ethyltexyl)phosphate(TEHP) were predominant in all food samples. OPFRs concentrations in foods were not significantly affected by the packaging materials. The mean dietary intakes of ΣOPFRs for adult males and females were 539 and 601ng/kg body weight/day, respectively. The greatest contribution to these values is from rice, accounting for approximately 60% of the total intake, particularly from rice protein. Rice ingestion was considered a potential major pathway for human exposure to OPFRs, and regional differences in the levels of OPFRs in foods and dietary differences should be given more attention in the future. PMID:27484948

  7. Differences among Major Taxa in the Extent of Ecological Knowledge across Four Major Ecosystems

    PubMed Central

    Fisher, Rebecca; Knowlton, Nancy; Brainard, Russell E.; Caley, M. Julian

    2011-01-01

    Existing knowledge shapes our understanding of ecosystems and is critical for ecosystem-based management of the world's natural resources. Typically this knowledge is biased among taxa, with some taxa far better studied than others, but the extent of this bias is poorly known. In conjunction with the publically available World Registry of Marine Species database (WoRMS) and one of the world's premier electronic scientific literature databases (Web of Science®), a text mining approach is used to examine the distribution of existing ecological knowledge among taxa in coral reef, mangrove, seagrass and kelp bed ecosystems. We found that for each of these ecosystems, most research has been limited to a few groups of organisms. While this bias clearly reflects the perceived importance of some taxa as commercially or ecologically valuable, the relative lack of research of other taxonomic groups highlights the problem that some key taxa and associated ecosystem processes they affect may be poorly understood or completely ignored. The approach outlined here could be applied to any type of ecosystem for analyzing previous research effort and identifying knowledge gaps in order to improve ecosystem-based conservation and management. PMID:22073172

  8. Rice SPX-Major Facility Superfamily3, a Vacuolar Phosphate Efflux Transporter, Is Involved in Maintaining Phosphate Homeostasis in Rice.

    PubMed

    Wang, Chuang; Yue, Wenhao; Ying, Yinghui; Wang, Shoudong; Secco, David; Liu, Yu; Whelan, James; Tyerman, Stephen D; Shou, Huixia

    2015-12-01

    To maintain a stable cytosol phosphate (Pi) concentration, plant cells store Pi in their vacuoles. When the Pi concentration in the cytosol decreases, Pi is exported from the vacuole into the cytosol. This export is mediated by Pi transporters on the tonoplast. In this study, we demonstrate that SYG1, PHO81, and XPR1 (SPX)-Major Facility Superfamily (MFS) proteins have a similar structure with yeast (Saccharomyces cerevisiae) low-affinity Pi transporters Phosphatase87 (PHO87), PHO90, and PHO91. OsSPX-MFS1, OsSPX-MFS2, and OsSPX-MFS3 all localized on the tonoplast of rice (Oryza sativa) protoplasts, even in the absence of the SPX domain. At high external Pi concentration, OsSPX-MFS3 could partially complement the yeast mutant strain EY917 under pH 5.5, which lacks all five Pi transporters present in yeast. In oocytes, OsSPX-MFS3 was shown to facilitate Pi influx or efflux depending on the external pH and Pi concentrations. In contrast to tonoplast localization in plants cells, OsSPX-MFS3 was localized to the plasma membrane when expressed in both yeast and oocytes. Overexpression of OsSPX-MFS3 results in decreased Pi concentration in the vacuole of rice tissues. We conclude that OsSPX-MFS3 is a low-affinity Pi transporter that mediates Pi efflux from the vacuole into cytosol and is coupled to proton movement. PMID:26424157

  9. Carbon and water cycling in flooded and rainfed rice (Oryza Sativa) ecosystem: Disentangling agronomical and ecological aspects of water use efficiency

    NASA Astrophysics Data System (ADS)

    Nay-Htoon, Bhone; Xue, Wei; Dubbert, Maren; Lindner, Steve; Cuntz, Matthias; Ko, Jonghan; Tenhunen, John; Werner, Christiane

    2015-04-01

    Agricultural crops play an important role in the global carbon and water cycling process and there is intense research to understand and predict carbon and water fluxes, productivity and water use of cultivated crops under climate change. Mechanistic understanding of the trade of between ecosystem water use efficiency and agronomic water use efficiency to maintain higher crop yield and productive water loss is necessary for the ecosystem sustainability. . We compared water and carbon fluxes of paddy and rainfed rice by canopy scale gas exchange measurements, crop growth, and daily evapotranspiration, transpiration and carbon flux modeling. According to our findings, evaporation contributed strongly (maximum 100% to minimum 45%) to paddy rice evapotranspiration while transpiration of rainfed is almost 50 % of daily evapotranspiration. Water use efficiency (WUE) was higher in rainfed rice both from an agronomic (WUEagro, i.e. grain yield per evapotranspiration) and ecosystem (WUEeco, i.e. gross primary production per evapotranspiration) perspective. However, rainfed rice showed also high ecosystem respiration losses and a slightly lower crop yield, demonstrating that higher WUE in rainfed rice comes at the expense of higher respiration losses of assimilated carbon and lower plant production, compared to paddy rice. Our results highlighted the need to partition water and carbon fluxes to improve our mechanistic understanding of water use efficiency and environmental impact of different agricultural practices. Keywords: Rainfed rice, Paddy rice, water use efficiency, Transpiration/Evapotranspiration, ecosystem WUE, agronomic WUE, Evapotranspiration

  10. QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance.

    PubMed

    Yao, Nasser; Lee, Cheng-Ruei; Semagn, Kassa; Sow, Mounirou; Nwilene, Francis; Kolade, Olufisayo; Bocco, Roland; Oyetunji, Olumoye; Mitchell-Olds, Thomas; Ndjiondjop, Marie-Noëlle

    2016-01-01

    African rice gall midge (AfRGM) is one of the most destructive pests of irrigated and lowland African ecologies. This study aimed to identify the quantitative trait loci (QTL) associated with AfRGM pest incidence and resistance in three independent bi-parental rice populations (ITA306xBW348-1, ITA306xTOG7106 and ITA306xTOS14519), and to conduct meta QTL (mQTL) analysis to explore whether any genomic regions are conserved across different genetic backgrounds. Composite interval mapping (CIM) conducted on the three populations independently uncovered a total of 28 QTLs associated with pest incidence (12) and pest severity (16). The number of QTLs per population associated with AfRGM resistance varied from three in the ITA306xBW348-1 population to eight in the ITA306xTOG7106 population. Each QTL individually explained 1.3 to 34.1% of the phenotypic variance. The major genomic region for AfRGM resistance had a LOD score and R2 of 60.0 and 34.1% respectively, and mapped at 111 cM on chromosome 4 (qAfrGM4) in the ITA306xTOS14519 population. The meta-analysis reduced the number of QTLs from 28 to 17 mQTLs, each explaining 1.3 to 24.5% of phenotypic variance, and narrowed the confidence intervals by 2.2 cM. There was only one minor effect mQTL on chromosome 1 that was common in the TOS14519 and TOG7106 genetic backgrounds; all other mQTLs were background specific. We are currently fine-mapping and validating the major effect genomic region on chromosome 4 (qAfRGM4). This is the first report in mapping the genomic regions associated with the AfRGM resistance, and will be highly useful for rice breeders. PMID:27508500

  11. QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance

    PubMed Central

    Semagn, Kassa; Sow, Mounirou; Nwilene, Francis; Kolade, Olufisayo; Bocco, Roland; Oyetunji, Olumoye; Mitchell-Olds, Thomas; Ndjiondjop, Marie-Noëlle

    2016-01-01

    African rice gall midge (AfRGM) is one of the most destructive pests of irrigated and lowland African ecologies. This study aimed to identify the quantitative trait loci (QTL) associated with AfRGM pest incidence and resistance in three independent bi-parental rice populations (ITA306xBW348-1, ITA306xTOG7106 and ITA306xTOS14519), and to conduct meta QTL (mQTL) analysis to explore whether any genomic regions are conserved across different genetic backgrounds. Composite interval mapping (CIM) conducted on the three populations independently uncovered a total of 28 QTLs associated with pest incidence (12) and pest severity (16). The number of QTLs per population associated with AfRGM resistance varied from three in the ITA306xBW348-1 population to eight in the ITA306xTOG7106 population. Each QTL individually explained 1.3 to 34.1% of the phenotypic variance. The major genomic region for AfRGM resistance had a LOD score and R2 of 60.0 and 34.1% respectively, and mapped at 111 cM on chromosome 4 (qAfrGM4) in the ITA306xTOS14519 population. The meta-analysis reduced the number of QTLs from 28 to 17 mQTLs, each explaining 1.3 to 24.5% of phenotypic variance, and narrowed the confidence intervals by 2.2 cM. There was only one minor effect mQTL on chromosome 1 that was common in the TOS14519 and TOG7106 genetic backgrounds; all other mQTLs were background specific. We are currently fine-mapping and validating the major effect genomic region on chromosome 4 (qAfRGM4). This is the first report in mapping the genomic regions associated with the AfRGM resistance, and will be highly useful for rice breeders. PMID:27508500

  12. 40 CFR Table 2c to Subpart Zzzz of... - Requirements for Existing Compression Ignition Stationary Rice Located at Major Sources of HAP...

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Ignition Stationary Rice Located at Major Sources of HAP Emissions 2c Table 2c to Subpart ZZZZ of Part 63... Stationary Rice Located at Major Sources of HAP Emissions As stated in §§ 63.6600 and 63.6640, you must comply with the following requirements for existing compression ignition stationary RICE: For...

  13. Modeling impacts of water and fertilizer management on ecosystem services from rice rotated crop systems in China

    NASA Astrophysics Data System (ADS)

    Chen, Han; Yu, Chaoqing; Li, Changsheng; Huang, Xiao; Zhang, Jie; Yue, Yali; Huang, Guorui

    2015-04-01

    Sustainable intensification in agriculture has stressed the need for management practices that could increase crop yields while simultaneously reducing environmental impacts. It is well recognized that water and nutrient management hold great promise to address these goals. This study uses the DNDC biogeochemical model to stimulate the impacts of water regime and nitrogen fertilizer management interactions on ecosystem services of rice rotated crop systems in China. County-level optimal nitrogen fertilizer application rates under various water management practices were captured and then multiple scenarios of water and nitrogen fertilizer management were set to more than 1600 counties with rice rotations in China. Results indicate that an national average of 15.7±5.9% (the mean value and standard deviation derive from variability of three water management practices) reduction of nitrogen fertilizer inputs can be achieved without significantly sacrificing rice yields. On a national scale, shallow flooding with optimal N application rates appear most potential to enhance ecosystem services, which led to 10.6% reduction of nitrogen fertilizer inputs, 34.3% decrease of total GHG emissions, 2.8% less of overall N loss (NH3 volatilization, denitrification and N leaching) and a 1.7% increase of rice yields compared to the baseline scenario. Regional GHG emissions mitigation derived from water regime change vary with soil properties and the multiple crop index. Among the main production regions of rice in China, the highest reduction happened in Jiangxu, Yunnan, Guizhou and Hubei (more than 40% reduction) with high SOC, high multiple crop index and low clay fraction. The highest reduction of GHG emissions derived from reducing current N application rate to optimal rate appeared in Zhejiang, Guangdong, Jiangsu where the serious over-application of mineral N exit. It was concluded that process models like DNDC would act an essential tool to identify sustainable agricultural

  14. Arsenic concentrations in paddy soil and rice and health implications for major rice-growing regions of Cambodia.

    PubMed

    Seyfferth, Angelia L; McCurdy, Sarah; Schaefer, Michael V; Fendorf, Scott

    2014-05-01

    Despite the global importance of As in rice, research has primarily focused on Bangladesh, India, China, and the United States with limited attention given to other countries. Owing to both indigenous As within the soil and the possible increases arising from the onset of irrigation with groundwater, an assessment of As in rice within Cambodia is needed, which offers a "base-case" comparison against sediments of similar origin that comprise rice paddy soils where As-contaminated water is used for irrigation (e.g., Bangladesh). Here, we evaluated the As content of rice from five provinces (Kandal, Prey Veng, Battambang, Banteay Meanchey, and Kampong Thom) in the rice-growing regions of Cambodia and coupled that data to soil-chemical factors based on extractions of paddy soil collected and processed under anoxic conditions. At total soil As concentrations ranging 0.8 to 18 μg g(-1), total grain As concentrations averaged 0.2 μg g(-1) and ranged from 0.1 to 0.37 with Banteay Meanchey rice having significantly higher values than Prey Veng rice. Overall, soil-extractable concentrations of As, Fe, P, and Si and total As were poor predictors of grain As concentrations. While biogeochemical factors leading to reduction of As(V)-bearing Fe(III) oxides are likely most important for predicting plant-available As, husk and straw As concentrations were the most significant predictors of grain-As levels among our measured parameters. PMID:24712677

  15. A major quantitative trait locus controlling cadmium translocation in rice (Oryza sativa).

    PubMed

    Ueno, D; Kono, I; Yokosho, K; Ando, T; Yano, M; Ma, J F

    2009-01-01

    The trait of low cadmium (Cd) accumulation in brown rice (Oryza sativa) is important for food safety. An effective way to reduce Cd accumulation in the grain is to control Cd transfer from the roots to the shoots. Here, we investigated genotypic variation in the shoot Cd concentration among 146 accessions from a rice core collection and performed a quantitative trait locus (QTL) analysis to determine the loci controlling shoot Cd accumulation. Furthermore, we physiologically characterized the two accessions used for QTL analysis. Large genotypic variation (13-fold) in the shoot Cd concentration was found. A major QTL was detected on chromosome 11 using a F2 population derived from Badari Dhan (a high-Cd accession) and Shwe War (a low-Cd accession). This QTL explained 16.1% of the phenotypic variation in Cd accumulation. Furthermore, this QTL was confirmed by analysis of advanced progeny. Physiological studies showed that Badari Dhan and Shwe War did not differ in uptake of Cd by the roots, but differed greatly in the translocation of Cd from the roots to the shoots. Taken together, our findings suggest that the major QTL detected is responsible for the translocation of Cd from the roots to the shoots. PMID:19309445

  16. Linkages and Interactions Analysis of Major Effect Drought Grain Yield QTLs in Rice.

    PubMed

    Vikram, Prashant; Swamy, B P Mallikarjuna; Dixit, Shalabh; Trinidad, Jennylyn; Sta Cruz, Ma Teresa; Maturan, Paul C; Amante, Modesto; Kumar, Arvind

    2016-01-01

    Quantitative trait loci conferring high grain yield under drought in rice are important genomic resources for climate resilient breeding. Major and consistent drought grain yield QTLs usually co-locate with flowering and/or plant height QTLs, which could be due to either linkage or pleiotropy. Five mapping populations used for the identification of major and consistent drought grain yield QTLs underwent multiple-trait, multiple-interval mapping test (MT-MIM) to estimate the significance of pleiotropy effects. Results indicated towards possible linkages between the drought grain yield QTLs with co-locating flowering and/or plant height QTLs. Linkages of days to flowering and plant height were eliminated through a marker-assisted breeding approach. Drought grain yield QTLs also showed interaction effects with flowering QTLs. Drought responsiveness of the flowering locus on chromosome 3 (qDTY3.2) has been revealed through allelic analysis. Considering linkage and interaction effects associated with drought QTLs, a comprehensive marker-assisted breeding strategy was followed to develop rice genotypes with improved grain yield under drought stress. PMID:27018583

  17. Linkages and Interactions Analysis of Major Effect Drought Grain Yield QTLs in Rice

    PubMed Central

    Vikram, Prashant; Swamy, B. P. Mallikarjuna; Dixit, Shalabh; Trinidad, Jennylyn; Sta Cruz, Ma Teresa; Maturan, Paul C.; Amante, Modesto; Kumar, Arvind

    2016-01-01

    Quantitative trait loci conferring high grain yield under drought in rice are important genomic resources for climate resilient breeding. Major and consistent drought grain yield QTLs usually co-locate with flowering and/or plant height QTLs, which could be due to either linkage or pleiotropy. Five mapping populations used for the identification of major and consistent drought grain yield QTLs underwent multiple-trait, multiple-interval mapping test (MT-MIM) to estimate the significance of pleiotropy effects. Results indicated towards possible linkages between the drought grain yield QTLs with co-locating flowering and/or plant height QTLs. Linkages of days to flowering and plant height were eliminated through a marker-assisted breeding approach. Drought grain yield QTLs also showed interaction effects with flowering QTLs. Drought responsiveness of the flowering locus on chromosome 3 (qDTY3.2) has been revealed through allelic analysis. Considering linkage and interaction effects associated with drought QTLs, a comprehensive marker-assisted breeding strategy was followed to develop rice genotypes with improved grain yield under drought stress. PMID:27018583

  18. Residues of carbosulfan and its metabolites carbofuran and 3-hydroxy carbofuran in rice field ecosystem in China.

    PubMed

    Zhang, Chang P; He, Hong M; Yu, Jian Z; Hu, Xiu Q; Zhu, Ya H; Wang, Qiang

    2016-06-01

    The fate of carbosulfan (seed treatment dry powder) was studied in rice field ecosystem, and a simple and reliable analytical method was developed for determination of carbosulfan, carbofuran, and 3-hydroxyl carbofuran in brown rice, rice straw, paddy water, and soil. The target compounds were extracted using acetonitrile or dichloromethane, cleaned up on acidic alumina or florisil solid phase extraction (SPE) cartridge, and analyzed by gas chromatography. The average recoveries of carbosulfan, carbofuran and 3-hydroxy carbofuran in brown rice, rice straw, paddy water, and soil ranged from 72.71% to 105.07%, with relative standard deviations of 2.00-8.80%. The limits of quantitation (LOQs) of carbosulfan, carbofuran and 3-hydroxy carbofuran in the samples (brown rice, rice straw, paddy water and soil) were 0.011, 0.0091, 0.014, 0.010 mg kg(-1), 0.016, 0.019, 0.025, 0.013 mg kg(-1), and 0.031, 0.039, 0.035, 0.036 mg kg(-1), respectively. The trials results showed that the half-lives of carbosulfan, carbofuran and 3-hydroxy carbofuran in rice straw were 4.0, 2.6 days, 3.9, 6.0 days, and 5.8, 7.0 days in Zhejiang and Hunan, respectively. Carbosulfan, carbofuran and 3-hydroxy carbofuran were detected in soils. Carbosulfan and 3-hydroxy carbofuran were almost undetectable in paddy water. Carbofuran was detected in paddy water. The final residues of carbosulfan, carbofuran and 3-hydroxy carbofuran in brown rice were lower than 0.05 mg kg(-1), which were lower than 0.5 mg kg(-1) (MRL of carbosulfan) or 0.1 mg kg(-1) (MRL of carbofuran). Therefore, a dosage of 420 g active ingredient per 100 kg seed was recommended, which could be considered as safe to human beings and animals. These would contribute to provide the scientific basis of using this insecticide. PMID:26963425

  19. Differences in net global warming potential and greenhouse gas intensity between major rice-based cropping systems in China.

    PubMed

    Xiong, Zhengqin; Liu, Yinglie; Wu, Zhen; Zhang, Xiaolin; Liu, Pingli; Huang, Taiqing

    2015-01-01

    Double rice (DR) and upland crop-single rice (UR) systems are the major rice-based cropping systems in China, yet differences in net global warming potential (NGWP) and greenhouse gas intensity (GHGI) between the two systems are poorly documented. Accordingly, a 3-year field experiment was conducted to simultaneously measure methane (CH4) and nitrous oxide (N2O) emissions and changes in soil organic carbon (SOC) in oil rape-rice-rice and wheat-rice (representing DR and UR, respectively) systems with straw incorporation (0, 3 and 6 t/ha) during the rice-growing seasons. Compared with the UR system, the annual CH4, N2O, grain yield and NGWP were significantly increased in the DR system, though little effect on SOC sequestration or GHGI was observed without straw incorporation. Straw incorporation increased CH4 emission and SOC sequestration but had no significant effect on N2O emission in both systems. Averaged over the three study years, straw incorporation had no significant effect on NGWP and GHGI in the UR system, whereas these parameters were greatly increased in the DR system, i.e., by 108% (3 t/ha) and 180% (6 t/ha) for NGWP and 103% (3 t/ha) and 168% (6 t/ha) for GHGI. PMID:26626733

  20. Differences in net global warming potential and greenhouse gas intensity between major rice-based cropping systems in China

    PubMed Central

    Xiong, Zhengqin; Liu, Yinglie; Wu, Zhen; Zhang, Xiaolin; Liu, Pingli; Huang, Taiqing

    2015-01-01

    Double rice (DR) and upland crop-single rice (UR) systems are the major rice-based cropping systems in China, yet differences in net global warming potential (NGWP) and greenhouse gas intensity (GHGI) between the two systems are poorly documented. Accordingly, a 3-year field experiment was conducted to simultaneously measure methane (CH4) and nitrous oxide (N2O) emissions and changes in soil organic carbon (SOC) in oil rape-rice-rice and wheat-rice (representing DR and UR, respectively) systems with straw incorporation (0, 3 and 6 t/ha) during the rice-growing seasons. Compared with the UR system, the annual CH4, N2O, grain yield and NGWP were significantly increased in the DR system, though little effect on SOC sequestration or GHGI was observed without straw incorporation. Straw incorporation increased CH4 emission and SOC sequestration but had no significant effect on N2O emission in both systems. Averaged over the three study years, straw incorporation had no significant effect on NGWP and GHGI in the UR system, whereas these parameters were greatly increased in the DR system, i.e., by 108% (3 t/ha) and 180% (6 t/ha) for NGWP and 103% (3 t/ha) and 168% (6 t/ha) for GHGI. PMID:26626733

  1. Differences in net global warming potential and greenhouse gas intensity between major rice-based cropping systems in China

    NASA Astrophysics Data System (ADS)

    Xiong, Zhengqin; Liu, Yinglie; Wu, Zhen; Zhang, Xiaolin; Liu, Pingli; Huang, Taiqing

    2015-12-01

    Double rice (DR) and upland crop-single rice (UR) systems are the major rice-based cropping systems in China, yet differences in net global warming potential (NGWP) and greenhouse gas intensity (GHGI) between the two systems are poorly documented. Accordingly, a 3-year field experiment was conducted to simultaneously measure methane (CH4) and nitrous oxide (N2O) emissions and changes in soil organic carbon (SOC) in oil rape-rice-rice and wheat-rice (representing DR and UR, respectively) systems with straw incorporation (0, 3 and 6 t/ha) during the rice-growing seasons. Compared with the UR system, the annual CH4, N2O, grain yield and NGWP were significantly increased in the DR system, though little effect on SOC sequestration or GHGI was observed without straw incorporation. Straw incorporation increased CH4 emission and SOC sequestration but had no significant effect on N2O emission in both systems. Averaged over the three study years, straw incorporation had no significant effect on NGWP and GHGI in the UR system, whereas these parameters were greatly increased in the DR system, i.e., by 108% (3 t/ha) and 180% (6 t/ha) for NGWP and 103% (3 t/ha) and 168% (6 t/ha) for GHGI.

  2. Transgenic rice expressing Allium sativum leaf agglutinin (ASAL) exhibits high-level resistance against major sap-sucking pests

    PubMed Central

    Yarasi, Bharathi; Sadumpati, Vijayakumar; Immanni, China Pasalu; Vudem, Dasavantha Reddy; Khareedu, Venkateswara Rao

    2008-01-01

    Background Rice (Oryza sativa) productivity is adversely impacted by numerous biotic and abiotic factors. An approximate 52% of the global production of rice is lost annually owing to the damage caused by biotic factors, of which ~21% is attributed to the attack of insect pests. In this paper we report the isolation, cloning and characterization of Allium sativum leaf agglutinin (asal) gene, and its expression in elite indica rice cultivars using Agrobacterium-mediated genetic transformation method. The stable transgenic lines, expressing ASAL, showed explicit resistance against major sap-sucking pests. Results Allium sativum leaf lectin gene (asal), coding for mannose binding homodimeric protein (ASAL) from garlic plants, has been isolated and introduced into elite indica rice cultivars susceptible to sap-sucking insects, viz., brown planthopper (BPH), green leafhopper (GLH) and whitebacked planthopper (WBPH). Embryogenic calli of rice were co-cultivated with Agrobacterium harbouring pSB111 super-binary vector comprising garlic lectin gene asal along with the herbicide resistance gene bar, both under the control of CaMV35S promoter. PCR and Southern blot analyses confirmed stable integration of transgenes into the genomes of rice plants. Northern and western blot analyses revealed expression of ASAL in different transgenic rice lines. In primary transformants, the level of ASAL protein, as estimated by enzyme-linked immunosorbent assay, varied between 0.74% and 1.45% of the total soluble proteins. In planta insect bioassays on transgenic rice lines revealed potent entomotoxic effects of ASAL on BPH, GLH and WBPH insects, as evidenced by significant decreases in the survival, development and fecundity of the insects. Conclusion In planta insect bioassays were carried out on asal transgenic rice lines employing standard screening techniques followed in conventional breeding for selection of insect resistant plants. The ASAL expressing rice plants, bestowed with high

  3. A putative acyl-CoA-binding protein is a major phloem sap protein in rice (Oryza sativa L.).

    PubMed

    Suzui, Nobuo; Nakamura, Shin-ichi; Fujiwara, Toru; Hayashi, Hiroaki; Yoneyama, Tadakatsu

    2006-01-01

    The N-terminal amino-acid sequence of a major rice phloem-sap protein, named RPP10, was determined. RPP10 is encoded by a single gene in the rice genome. Its complete amino-acid sequence, predicted from the corresponding rice full-length cDNA, showed high similarity to plant acyl-CoA-binding proteins (ACBPs). Western blot analysis using anti-ACBP antiserum revealed that putative ACBP is abundant in the phloem sap of rice plants, and is also present in sieve-tube exudates of winter squash (Cucurbita maxima), oilseed rape (Brassica napus), and coconut palm (Cocos nucifera). These findings give rise to the idea that ACBP may involve lipid metabolism and regulation in the phloem. PMID:16804052

  4. Water management impacts on arsenic behavior and rhizosphere bacterial communities and activities in a rice agro-ecosystem.

    PubMed

    Das, Suvendu; Chou, Mon-Lin; Jean, Jiin-Shuh; Liu, Chia-Chuan; Yang, Huai-Jen

    2016-01-15

    Although rice cultivated under water-saturated conditions as opposed to submerged conditions has received considerable attention with regard to reducing As levels in rice grain, the rhizosphere microbiome potentially influencing As-biotransformation and bioavailability in a rice ecosystem has rarely been studied. In this study, the impacts of flooded, non-flooded and alternate wetting and drying (AWD) practices on rhizosphere bacterial composition and activities that could potentially impact As speciation and accumulation in rhizosphere soil and pore water, As fractions in rhizosphere soil and As speciation and distribution in plant parts were assessed. The results revealed that in addition to pore water As concentration, non-specifically sorbed As fraction, specifically sorbed As fraction and amorphous iron oxide bound As fraction in soil were bio-available to rice plants. In the flooded treatment, As(III) in the pore water was the predominant As species, accounting for 87.3-93.6% of the total As, whereas in the non-flooded and AWD treatments, As(V) was the dominant As species, accounting for 89.6-96.2% and 73.0-83.0%, respectively. The genera Ohtaekwangia, Geobacter, Anaeromyxobacter, Desulfuromonas, Desulfocapsa, Desulfobulbus, and Lacibacter were found in relatively high abundance in the flooded soil, whereas the genera Acinetobacter, Ignavibacterium, Thiobacillus, and Lysobacter were detected in relatively high abundance in the non-flooded soil. Admittedly, the decrease in As level in rice cultivated under the non-flooded and AWD conditions was mostly linked to a relatively high soil redox potential, low As(III) concentration in the soil pore water, a decrease in the relative abundance of As-, Fe- and sulfur-reducing bacteria and an increase in the relative abundance of As-, Fe- and sulfur-oxidizing bacteria in the rhizosphere soil of the rice. This study demonstrated that with substantial reduction in grain As levels and higher water productivity, AWD

  5. Net ecosystem exchange, gross primary production, and ecosystem respiration of carbon dioxide during barley growing season in rice-barley paddy field of Korea

    NASA Astrophysics Data System (ADS)

    Jung, M.; Shim, K.; Min, S.; Kim, Y.; Kim, S.; So, K.

    2013-12-01

    This study was conducted to measure carbon dioxide exchange between customarily cultivated rice-barley double cropping paddy field and the atmosphere during barley growing season (October 2012 and June 2013) and to estimate carbon dioxide fluxes using agro-meteorological factors (temperature, net radiation etc. ) and barley biomass. The carbon dioxide fluxes were quantified by eddy covariance technique in paddy fields with rice-barley double cropping system, located at the Gimje flux site in the southwestern coast of Korea. The total values of net ecosystem carbon dioxide exchange (NEE), gross primary production (GPP), and ecosystem respiration (Re) were -100.6, 782.7, and 682.5 g C m-2 during barley growing season, respectively. The NEE was tended to keep between 0 and 5 g C m-2 d-1 from sowing date (Oct. 21, 2012) to winter rest stage (Dec. 3, 2012 to Feb. 22, 2013), and gradually decreased in tillering stage (Feb. 23, 2013 to May 5, 2013) with its maximum around heading date, and then started to increase in ripening stage (May 6, 2013 to Jun. 8, 2013). The soil temperature was strongly correlated with the Re (r2=0.86), while the net radiation showed the weak relationship with the GPP during the emergence, seedling, and winter rest stage. The aboveground biomass of barley was significantly correlated with the values of NEE (r2=0.79), GPP (r2=0.83), and Re (r2=0.77), respectively.

  6. Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice.

    PubMed

    Niessen, Markus; Krause, Katrin; Horst, Ina; Staebler, Norma; Klaus, Stephanie; Gaertner, Stefanie; Kebeish, Rashad; Araujo, Wagner L; Fernie, Alisdair R; Peterhansel, Christoph

    2012-04-01

    The major photorespiratory pathway in higher plants is distributed over chloroplasts, mitochondria, and peroxisomes. In this pathway, glycolate oxidation takes place in peroxisomes. It was previously suggested that a mitochondrial glycolate dehydrogenase (GlcDH) that was conserved from green algae lacking leaf-type peroxisomes contributes to photorespiration in Arabidopsis thaliana. Here, the identification of two Arabidopsis mitochondrial alanine:glyoxylate aminotransferases (ALAATs) that link glycolate oxidation to glycine formation are described. By this reaction, the mitochondrial side pathway produces glycine from glyoxylate that can be used in the glycine decarboxylase (GCD) reaction of the major pathway. RNA interference (RNAi) suppression of mitochondrial ALAAT did not result in major changes in metabolite pools under standard conditions or enhanced photorespiratroy flux, respectively. However, RNAi lines showed reduced photorespiratory CO(2) release and a lower CO(2) compensation point. Mitochondria isolated from RNAi lines are incapable of converting glycolate to CO(2), whereas simultaneous overexpression of GlcDH and ALAATs in transiently transformed tobacco leaves enhances glycolate conversion. Furthermore, analyses of rice mitochondria suggest that the side pathway for glycolate oxidation and glycine formation is conserved in monocotyledoneous plants. It is concluded that the photorespiratory pathway from green algae has been functionally conserved in higher plants. PMID:22268146

  7. Sun-induced chlorophyll fluorescence reveals strong representation of photosynthesis at ecosystem level in rice paddy field in Japan

    NASA Astrophysics Data System (ADS)

    Kato, T.; Tsujimoto, K.; Nasahara, K. N.; Akitsu, T.; Ono, K.; Miyata, A.

    2015-12-01

    Chlorophyll fluorescence emission from ecosystem induced by sunlight (Sun-Induced Fluorescence: SIF) is now a key factor to accurately estimate the ecosystem-level photosynthesis activity as suggested by satellite studies, and has been recently detected by satellites [Frankenberg et al., 2011; Guanter et al., 2012; Joiner et al., 2013] and measured at field stations [Daumard et al., 2010; Porcar-Castell, 2011]. However, the few example of field-based assessment on the representation ability reduces its value for the availability to better understand the dynamics in CO2uptake by land ecosystem. To elucidate the potential of SIF to estimate ecosystem GPP in typical Asian crop type, the canopy-top SIF was calculated from the spectrum data in Japanese rice paddy field in Mase in central Japan (36°03'N, 140°01'E, 11 m a.s.l.), and compared with eddy-tower measured GPP on half-hourly and daily bases during seven years from 2006 to 2012. The rice (Oriza sativa L.; cultivar Koshihikari) was transplanted in May and harvested in September normally. The SIF was estimated from the spectrums of downward Sun irradiance and upward canopy-reflected radiance measured at the height of 3m above ground by HemiSpherical Spectro-Radiometer (HSSR), consisting of the spectroradiometer (MS-700, Eko inc., Tokyo, Japan) with the full-width at half maximum (FWHM) of 10 nm and wavelength interval of 3.3 nm. The SIF around 760nm (O2-A band: Fs760) was calculated according to the Fraunhofer Line Depth principle [Maier et al., 2003] with several additional arrangements. The GPP increased almost linearly as both Fs760 and APAR (Absorbed Photosyntethically Active Radiation) increased based on monthly-averaged diurnal courses during the growing season in 2006. The slopes of their regression lines differed much among the months in APAR, but in Fs760. These nearly constant relationships among the months between GPP and Fs760 were kept for all the observation years. Daily averaged GPP and Fs760

  8. Biophysical controls on interannual variability in ecosystem-scale CO2 and CH4 exchange in a California rice paddy

    NASA Astrophysics Data System (ADS)

    Knox, Sara Helen; Matthes, Jaclyn Hatala; Sturtevant, Cove; Oikawa, Patricia Y.; Verfaillie, Joseph; Baldocchi, Dennis

    2016-03-01

    We present 6.5 years of eddy covariance measurements of fluxes of methane (FCH4) and carbon dioxide (FCO2) from a flooded rice paddy in Northern California, USA. A pronounced warming trend throughout the study associated with drought and record high temperatures strongly influenced carbon (C) budgets and provided insights into biophysical controls of FCO2 and FCH4. Wavelet analysis indicated that photosynthesis (gross ecosystem production, GEP) induced the diel pattern in FCH4, but soil temperature (Ts) modulated its amplitude. Forward stepwise linear models and neural networking modeling were used to assess the variables regulating seasonal FCH4. As expected due to their competence in modeling nonlinear relationships, neural network models explained considerably more of the variance in daily average FCH4 than linear models. During the growing season, GEP and water levels typically explained most of the variance in daily average FCH4. However, Ts explained much of the interannual variability in annual and growing season CH4 sums. Higher Ts also increased the annual and growing season ratio of FCH4 to GEP. The observation that the FCH4 to GEP ratio scales predictably with Ts may help improve global estimates of FCH4 from rice agriculture. Additionally, Ts strongly influenced ecosystem respiration, resulting in large interannual variability in the net C budget at the paddy, emphasizing the need for long-term measurements particularly under changing climatic conditions.

  9. 40 CFR Table 2c to Subpart Zzzz of... - Requirements for Existing Compression Ignition Stationary RICE Located at a Major Source of HAP...

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 40 Protection of Environment 14 2013-07-01 2013-07-01 false Requirements for Existing Compression Ignition Stationary RICE Located at a Major Source of HAP Emissions and Existing Spark Ignition Stationary RICE â¤500 HP Located at a Major Source of HAP Emissions 2c Table 2c to Subpart ZZZZ of Part 63 Protection of Environment...

  10. Assessment of toxicity risk of insecticides used in rice ecosystem on Trichogramma japonicum, an egg parasitoid of rice lepidopterans.

    PubMed

    Zhao, Xueping; Wu, Changxing; Wang, Yanhua; Cang, Tao; Chen, Liping; Yu, Ruixian; Wang, Qiang

    2012-02-01

    Both chemical and biological methods are essential for control of insects, for example, lepidopterans, on rice. Thus, it is important to know the effect of chemicals on the biological control agents. In this study, we assessed the toxicity of commonly used insecticides on a biological control agent, Trichogramma japonicum Ahmead (an egg parasitoid of rice lepidopterans) by using a dry film residue method. Results showed that thirty insecticides from seven chemical classes exhibited various degree of toxicity to this parasitoid. Among the seven classes of chemicals tested, organophosphates (chlorpyrifos, fenitrothion, phoxim, profenofos, and triazophos) and carbamates (carbaryl, carbsulfan, isoprocarb, metolcarb, and promecarb) exhibited the highest intrinsic toxicity to T. japponicum, with an LC50 of 0.035 (0.029-0.044) to 0.49 (0.34-0.87) mg active ingredient (a.i.) L(-1), followed by antibiotics (abamectin, emamectin benzoate, and ivermectin), phenylpyrazoles (butane-fipronil, ethiprole, and fipronil), pyrethroids (cyhalthrin, cypermethrin, fenpropathrin, and lambda-cyhaothrin), and neonicotinoids (acetamiprid, imidacloprid, imidaclothiz, nitenpyram, thiacloprid, and thiamethoxam). Moreover, the insect growth regulator insecticides (chlorfluazuron, fufenozide, hexaflumuron and tebufenozide) exhibited the lowest toxicity to the wasps with an LC50 of 3,383 (2406-5499) to 30206 (23107-41008) mg ai. L(-1). Risk quotient analysis showed that phenylpyrazoles, pyrethroids, insect growth regulators, neonicotinoids (with the exception of thiamethoxam), and antibiotics (with the exception of abamectin) are classified as safe agents to the parasitoid, while organophosphates and carbamates are classified as slightly, moderately, or highly toxic agents to the parasitoid. The data presented in this paper provided useful information on the selection of compatible insecticides with T. japonicum. PMID:22420260

  11. Classification and evaluation of vegetation dynamics of major ecosystems in Colorado using NOAA satellite data

    NASA Astrophysics Data System (ADS)

    Shahmoradi-Varnamkhasti, Amrali

    The objective of this study was to determine performance and year-to-year consistency of land cover/land use classification in the state of Colorado, based on intra-annual variations of greenness, and to evaluate vegetation dynamics in major rangeland ecosystems in the state. Data used for the study included biweekly Normalized Difference Vegetation Index (NDVI) data from the Advanced Very High Resolution Radiometer (AVHRR) of the National Oceanic and Atmospheric Administration (NOAA) satellite, and climatic, edaphic, and topographic data. The data were obtained from 1990 to 1993. Overall accuracies of classification performance for eleven major cover types were 57.1, 53.3, 52.5, and 52.8 percent for 1990. 1991, 1992, and 1993, respectively. No significant differences were found between the four years. However, using four-year combined data improved classification performance to an overall accuracy of 61.7 percent. Regression analyses between precipitation, temperature, and biweekly NDVI were conducted for grassland ecosystems of the study site. NDVI values did not show a strong relationship between the sum of precipitation and average temperature for time periods of four weeks. Some NDVI-related variables were used to evaluate vegetation dynamics of rangeland ecosystems. Stepwise regression procedures showed that annual precipitation is not an effective explanatory variable for NDVI-related indicators of primary production for the rangelands tested. Annual temperature, however, showed some correlation with indicators of primary production and rain use efficiency for six of ten rangeland types of mountains and plains. Soil texture showed significant correlation with most NDVI-related variables for major grasslands. For shrublands, however, there was little correlation between soil texture and NDVI-related variables. Topographic variables of aspect and slope correlated with NDVI-related variables, and correlations were more significant for vegetation types of the

  12. Active atmosphere-ecosystem exchange of the vast majority of detected volatile organic compounds.

    PubMed

    Park, J-H; Goldstein, A H; Timkovsky, J; Fares, S; Weber, R; Karlik, J; Holzinger, R

    2013-08-01

    Numerous volatile organic compounds (VOCs) exist in Earth's atmosphere, most of which originate from biogenic emissions. Despite VOCs' critical role in tropospheric chemistry, studies for evaluating their atmosphere-ecosystem exchange (emission and deposition) have been limited to a few dominant compounds owing to a lack of appropriate measurement techniques. Using a high-mass resolution proton transfer reaction-time of flight-mass spectrometer and an absolute value eddy-covariance method, we directly measured 186 organic ions with net deposition, and 494 that have bidirectional flux. This observation of active atmosphere-ecosystem exchange of the vast majority of detected VOCs poses a challenge to current emission, air quality, and global climate models, which do not account for this extremely large range of compounds. This observation also provides new insight for understanding the atmospheric VOC budget. PMID:23929979

  13. Monitoring seasonal progress of rice stubble burning in major rice growing districts of Haryana, India, using multidate AWiFS data

    NASA Astrophysics Data System (ADS)

    Yadav, M.; Prawasi, R.; Jangra, S.; Rana, P.; Kumari, K.; Lal, S.; Jakhar, K.; Sharma, S.; Hooda, R. S.

    2014-11-01

    The present paper describes the methodology and results of assessment of seasonal progress of rice stubble burning for 10 major rice growing districts of Haryana state in India. These 10 districts contribute about 84 per cent of total rice area of the state. As the rice fields are immediately required to be vacated for the sowing of next crop the farmers opt for mechanized harvesting and easy way out of burning the stubbles in the field. Such burning result in release of polluting gases and aerosols. Besides, the heating of the soil kills the useful micro-flora of the soil causing soil degradation. Multi-date AWiFS data from Resourcesat 1 and 2 satellites acquired between October 16, 2013 to November 26, 2013 were used for estimating paddy stubble burning areas at different intervals for the year 2013 crop growing season. In season collected ground truth data using hand held GPS along with field photographs were used to identify paddy stubble burning areas and other land features. Complete enumeration approach and Iterative Self-organizing Data Analysis Technique (ISODATA) unsupervised classifier was used for digital analysis. Normalized Difference Vegetation Index (NDVI) of each date was also used with other spectral bands of temporal images. To improve the classification accuracy the non-agricultural areas were masked out. The area was estimated by computing pixels under the classified image mask. Progress of paddy stubble burning was estimated at different intervals for the year 2013 using available cloud free multi-date IRS-P6 AWiFS data to identify the crucial period when stubbles burning takes place in major area so that preventive measures can be taken to curb the menace.

  14. Decision tools for bacterial blight resistance gene deployment in rice-based agricultural ecosystems

    PubMed Central

    Dossa, Gerbert S.; Sparks, Adam; Cruz, Casiana Vera; Oliva, Ricardo

    2015-01-01

    Attempting to achieve long-lasting and stable resistance using uniformly deployed rice varieties is not a sustainable approach. The real situation appears to be much more complex and dynamic, one in which pathogens quickly adapt to resistant varieties. To prevent disease epidemics, deployment should be customized and this decision will require interdisciplinary actions. This perspective article aims to highlight the current progress on disease resistance deployment to control bacterial blight in rice. Although the model system rice-Xanthomonas oryzae pv. oryzae has distinctive features that underpin the need for a case-by-case analysis, strategies to integrate those elements into a unique decision tool could be easily extended to other crops. PMID:25999970

  15. Rice Undeveloped Tapetum1 Is a Major Regulator of Early Tapetum DevelopmentW⃞

    PubMed Central

    Jung, Ki-Hong; Han, Min-Jung; Lee, Yang-Seok; Kim, Yong-Woo; Hwang, Inhwan; Kim, Min-Jeong; Kim, Yeon-Ki; Nahm, Baek Hie; An, Gynheung

    2005-01-01

    The tapetum, the innermost of four sporophytic layers in the anther wall, comes in direct contact with the developing male gametophyte and is thought to play a crucial role in the development and maturation of microspores. Here, we report the identification of rice (Oryza sativa) Undeveloped Tapetum1 (Udt1), which is required for the differentiation of secondary parietal cells to mature tapetal cells. T-DNA or retrotransposon Tos17 insertions in the Udt1 gene caused male sterility. The anther walls and meiocytes of the mutants were normal during the early premeiosis stage, but their tapeta failed to differentiate and became vacuolated during the meiotic stage. In addition, meiocytes did not develop to microspores, and middle layer degeneration was inhibited. Consequently, the anther locules contained no pollen. The UDT1:green fluorescent protein fusion protein was localized to the nucleus. This, together with its homology with other basic helix-loop-helix proteins, suggests that UDT1 is a transcription factor. DNA microarray analysis identified 958 downregulated and 267 upregulated genes in the udt1-1 anthers, suggesting that Udt1 plays a major role in maintaining tapetum development, starting in early meiosis. PMID:16141453

  16. How to measure ecosystem stability? An evaluation of the reliability of stability metrics based on remote sensing time series across the major global ecosystems.

    PubMed

    De Keersmaecker, Wanda; Lhermitte, Stef; Honnay, Olivier; Farifteh, Jamshid; Somers, Ben; Coppin, Pol

    2014-07-01

    Increasing frequency of extreme climate events is likely to impose increased stress on ecosystems and to jeopardize the services that ecosystems provide. Therefore, it is of major importance to assess the effects of extreme climate events on the temporal stability (i.e., the resistance, the resilience, and the variance) of ecosystem properties. Most time series of ecosystem properties are, however, affected by varying data characteristics, uncertainties, and noise, which complicate the comparison of ecosystem stability metrics (ESMs) between locations. Therefore, there is a strong need for a more comprehensive understanding regarding the reliability of stability metrics and how they can be used to compare ecosystem stability globally. The objective of this study was to evaluate the performance of temporal ESMs based on time series of the Moderate Resolution Imaging Spectroradiometer derived Normalized Difference Vegetation Index of 15 global land-cover types. We provide a framework (i) to assess the reliability of ESMs in function of data characteristics, uncertainties and noise and (ii) to integrate reliability estimates in future global ecosystem stability studies against climate disturbances. The performance of our framework was tested through (i) a global ecosystem comparison and (ii) an comparison of ecosystem stability in response to the 2003 drought. The results show the influence of data quality on the accuracy of ecosystem stability. White noise, biased noise, and trends have a stronger effect on the accuracy of stability metrics than the length of the time series, temporal resolution, or amount of missing values. Moreover, we demonstrate the importance of integrating reliability estimates to interpret stability metrics within confidence limits. Based on these confidence limits, other studies dealing with specific ecosystem types or locations can be put into context, and a more reliable assessment of ecosystem stability against environmental disturbances

  17. Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities

    PubMed Central

    2014-01-01

    Background Availability of irrigation water is becoming a major limiting factor in rice cultivation. Production in rainfed areas is affected in particular by drought events, as these areas are commonly planted to high-yielding drought-susceptible rice (Oryza sativa L.) varieties. The use of bulk segregant analysis (BSA), taking grain yield (GY) as a selection criterion, has resulted in the identification of several large-effect QTL. A QTL mapping study was undertaken on a BC1F3:4 population developed from the cross IR55419-04/2*TDK1 with the aim of identifying large-effect QTL in the background of TDK1, a popular variety from Lao PDR. Results The study identified three QTL—qDTY 3.1 (RM168-RM468), qDTY 6.1 (RM586-RM217), and qDTY 6.2 (RM121-RM541)—for grain yield under drought. qDTY 3.1 and qDTY 6.1 , showed consistent effect across seasons under lowland drought-stress conditions while qDTY 6.1 and qDTY 6.2 showed effect under both upland and lowland drought conditions. The test of QTL effect, conducted through a QTL class analysis, showed the complimentary nature of qDTY 3.1 and qDTY 6.1 . Both QTL showed specific patterns of effect across different maturity groups within the mapping population and higher stability for grain yield was seen across stress levels for lines with both QTLs as compared to those with single or no QTL. Conclusions The study offers a clear understanding of large-effect QTL for grain yield under drought and their effect as individual QTL and in various combinations. The study also opens up an opportunity to develop a drought-tolerant version of TDK1 through marker-assisted backcross breeding and has led to a large-scale QTL pyramiding program aiming to combine these QTL with Sub1 in the background of TDK1 as recipient variety. PMID:24491154

  18. Rapid Identification of Major QTLs Associated with Rice Grain Weight and Their Utilization

    PubMed Central

    Xu, Feifei; Sun, Xiao; Chen, Yaling; Huang, Yan; Tong, Chuan; Bao, Jinsong

    2015-01-01

    To uncover the genetics of rice grain weight, we constructed an RIL population derived from a cross between a large grain accession M201 and a small size variety JY293. Specific Locus Amplified Fragment Sequencing (SLAF-Seq) technology was used to genotype two bulked DNA pools made from individual DNA of the heaviest 30 lines and the lightest 30 lines according to the 1000 grain weight (TGW). Bulked segregant analysis (BSA) was used to identify SLAFs strongly associated with TGW. Two marker-intensive regions at 24,600,000–24,850,000 bp and 25,000,000–25,350,000 bp on chromosome 3 were identified tightly related to the TGW. Then a linkage map of chromosome 3 was constructed with SSR markers and some SLAF derived single nucleotide polymorphisms (SNPs). Quantitative trait locus (QTL) mapping for TGW, grain length, grain width, and grain thickness revealed one major QTL in the second hot-region and two other minor QTLs for grain weight. These three QTLs displayed hierarchical effects on grain length and grain weight in order of qTGW3.2 (qGL3) qTGW3.1 (GS3) qTGW3.3. Multiple comparisons of means among the eight combinations of 3 QTLs revealed that the lines with two of three QTLs deriving from M201 displayed a large grain weight phenotype (TGW 40.2g, average data of three years) and lines with both qTGW3.1 and qTGW3.3 alleles from M201 (42.5g) had similar grain weight to the qTGW3.2 (40.8g) alone. Two strategies with similar effectiveness were proposed to improve grain weight by marker-assisted selection (MAS). One is to introduce the novel qTGW3.2 allele alone, and the other is to pyramid qTGW3.1 and qTGW3.3 alleles together. One new allele of GS3 (39 bp deletion in intron 1) and two SNPs in coding sequence of qGL3 identified in this study from M201 are useful in pyramiding elite alleles for molecular breeding for improvement of rice yield. PMID:25815721

  19. Rapid identification of major QTLs associated with rice grain weight and their utilization.

    PubMed

    Xu, Feifei; Sun, Xiao; Chen, Yaling; Huang, Yan; Tong, Chuan; Bao, Jinsong

    2015-01-01

    To uncover the genetics of rice grain weight, we constructed an RIL population derived from a cross between a large grain accession M201 and a small size variety JY293. Specific Locus Amplified Fragment Sequencing (SLAF-Seq) technology was used to genotype two bulked DNA pools made from individual DNA of the heaviest 30 lines and the lightest 30 lines according to the 1000 grain weight (TGW). Bulked segregant analysis (BSA) was used to identify SLAFs strongly associated with TGW. Two marker-intensive regions at 24,600,000-24,850,000 bp and 25,000,000-25,350,000 bp on chromosome 3 were identified tightly related to the TGW. Then a linkage map of chromosome 3 was constructed with SSR markers and some SLAF derived single nucleotide polymorphisms (SNPs). Quantitative trait locus (QTL) mapping for TGW, grain length, grain width, and grain thickness revealed one major QTL in the second hot-region and two other minor QTLs for grain weight. These three QTLs displayed hierarchical effects on grain length and grain weight in order of qTGW3.2 (qGL3) qTGW3.1 (GS3) qTGW3.3. Multiple comparisons of means among the eight combinations of 3 QTLs revealed that the lines with two of three QTLs deriving from M201 displayed a large grain weight phenotype (TGW 40.2g, average data of three years) and lines with both qTGW3.1 and qTGW3.3 alleles from M201 (42.5g) had similar grain weight to the qTGW3.2 (40.8g) alone. Two strategies with similar effectiveness were proposed to improve grain weight by marker-assisted selection (MAS). One is to introduce the novel qTGW3.2 allele alone, and the other is to pyramid qTGW3.1 and qTGW3.3 alleles together. One new allele of GS3 (39 bp deletion in intron 1) and two SNPs in coding sequence of qGL3 identified in this study from M201 are useful in pyramiding elite alleles for molecular breeding for improvement of rice yield. PMID:25815721

  20. Herbivory makes major contributions to ecosystem carbon and nutrient cycling in tropical forests.

    PubMed

    Metcalfe, Daniel B; Asner, Gregory P; Martin, Roberta E; Silva Espejo, Javier E; Huasco, Walter Huaraca; Farfán Amézquita, Felix F; Carranza-Jimenez, Loreli; Galiano Cabrera, Darcy F; Baca, Liliana Durand; Sinca, Felipe; Huaraca Quispe, Lidia P; Taype, Ivonne Alzamora; Mora, Luzmila Eguiluz; Dávila, Angela Rozas; Solórzano, Marlene Mamani; Puma Vilca, Beisit L; Laupa Román, Judith M; Guerra Bustios, Patricia C; Revilla, Norma Salinas; Tupayachi, Raul; Girardin, Cécile A J; Doughty, Christopher E; Malhi, Yadvinder

    2014-03-01

    The functional role of herbivores in tropical rainforests remains poorly understood. We quantified the magnitude of, and underlying controls on, carbon, nitrogen and phosphorus cycled by invertebrate herbivory along a 2800 m elevational gradient in the tropical Andes spanning 12°C mean annual temperature. We find, firstly, that leaf area loss is greater at warmer sites with lower foliar phosphorus, and secondly, that the estimated herbivore-mediated flux of foliar nitrogen and phosphorus from plants to soil via leaf area loss is similar to, or greater than, other major sources of these nutrients in tropical forests. Finally, we estimate that herbivores consume a significant portion of plant carbon, potentially causing major shifts in the pattern of plant and soil carbon cycling. We conclude that future shifts in herbivore abundance and activity as a result of environmental change could have major impacts on soil fertility and ecosystem carbon sequestration in tropical forests. PMID:24372865

  1. Persistent natural acidification drives major distribution shifts in marine benthic ecosystems.

    PubMed

    Linares, C; Vidal, M; Canals, M; Kersting, D K; Amblas, D; Aspillaga, E; Cebrián, E; Delgado-Huertas, A; Díaz, D; Garrabou, J; Hereu, B; Navarro, L; Teixidó, N; Ballesteros, E

    2015-11-01

    Ocean acidification is receiving increasing attention because of its potential to affect marine ecosystems. Rare CO2 vents offer a unique opportunity to investigate the response of benthic ecosystems to acidification. However, the benthic habitats investigated so far are mainly found at very shallow water (less than or equal to 5 m depth) and therefore are not representative of the broad range of continental shelf habitats. Here, we show that a decrease from pH 8.1 to 7.9 observed in a CO2 vent system at 40 m depth leads to a dramatic shift in highly diverse and structurally complex habitats. Forests of the kelp Laminaria rodriguezii usually found at larger depths (greater than 65 m) replace the otherwise dominant habitats (i.e. coralligenous outcrops and rhodolith beds), which are mainly characterized by calcifying organisms. Only the aragonite-calcifying algae are able to survive in acidified waters, while high-magnesium-calcite organisms are almost completely absent. Although a long-term survey of the venting area would be necessary to fully understand the effects of the variability of pH and other carbonate parameters over the structure and functioning of the investigated mesophotic habitats, our results suggest that in addition of significant changes at species level, moderate ocean acidification may entail major shifts in the distribution and dominance of key benthic ecosystems at regional scale, which could have broad ecological and socio-economic implications. PMID:26511045

  2. Development of pyramidal lines with two major QTLs conferring resistance to sheath blight in rice (Oryza sativa L.)

    NASA Astrophysics Data System (ADS)

    Hossain, Md Kamal; Jena, Kshirod; Bhuiyan, Md Atiqur Rahman; Ratnam, Wickneswari

    2014-09-01

    Sheath blight is an emerging threat in rice cultivation. It is animportant disease caused by the soil-borne necrotrophic pathogenic fungus, Rhizoctonia solani Kühn. However, to date neither known major genes for quantitative resistance, nor any rice lines immune to this disease has been identified. The disease resistance is quantitative in nature. Numerous genes are involved in this resistance process. There are few quantitative trait loci (QTLs) detected conferring improved resistance against the disease. Teqing and Tetepshowimproved resistance having QTLs, qSB-9 and qSBR11-1, respectively. Since, these QTLs demonstrates additive effects, pyramiding of these QTLs might be an option to increase the sheath blight resistance in rice. Nine rice cultivars were screened at greenhouse conditions. Results showed that Tetep and Teqing had the lowest disease ratings. UKMRC2a new high yielding cultivar was as recipient parent. Crosses between UKMRC2 and Teqing, and UKMRC2 and Tetep were made and confirmed. Subsequently 4-way crosses between the two F1s were performed to develop pyramidal lines.

  3. Long-term changes in soil pH across major forest ecosystems in China

    NASA Astrophysics Data System (ADS)

    Yang, Yuanhe; Li, Pin; He, Honglin; Zhao, Xia; Datta, Arindam; Ma, Wenhong; Zhang, Ying; Liu, Xuejun; Han, Wenxuan; Wilson, Maxwell C.; Fang, Jingyun

    2015-02-01

    Atmospheric acidic deposition has been a major environmental problem since the industrial revolution. However, our understanding of the effect of acidic deposition on soil pH is inconclusive. Here we examined temporal variations in topsoil pH and their relationships with atmospheric sulfur and nitrogen deposition across China's forests from the 1980s to the 2000s. To accomplish this goal, we conducted artificial neural network simulations using historical soil inventory data from the 1980s and a data set synthesized from literature published after 2000. Our results indicated that significant decreases in soil pH occurred in broadleaved forests, while minor changes were observed in coniferous and mixed coniferous and broadleaved forests. The magnitude of soil pH change was negatively correlated with atmospheric sulfur and nitrogen deposition. This relationship highlights the need for stringent measures that reduce sulfur and nitrogen emissions so as to maintain ecosystem structure and function.

  4. [Potential effects of Bt transgenic rice on soil micro-ecosystem].

    PubMed

    Wang, Zhonghua

    2005-12-01

    With the increasing commercial use of genetically modified crops (GMCs), it is quite important to assess their potential ecological risk. The likelihood of genes dispersal from GMCs to related wild species, the tolerance of insects to insect-resistant GMCs, and the potential impact of GMCs on biodiversity have been extensively investigated. This article reviewed the potential ecological risk assessment of transgenic Bt rice-expressed products, including the persistence characteristics of Bt insecticidal crystal proteins in soil, and their effects on soil culturable microbial flora and soil enzyme activities, which could provide useful information for related researches. PMID:16515209

  5. Coupling of Belowground Carbon Cycling and Stoichiometry from Organisms to Ecosystems along a Soil C Gradient Under Rice Cultivation

    NASA Astrophysics Data System (ADS)

    Hartman, W.; Ye, R.; Horwath, W. R.; Tringe, S. G.

    2015-12-01

    Ecological stoichiometry is a framework linking biogeochemical cycles to organism functional traits that has been widely applied in aquatic ecosystems, animals and plants, but is poorly explored in soil microbes. We evaluated relationships among soil stoichiometry, carbon (C) cycling, and microbial community structure and function along a soil gradient spanning ~5-25% C in cultivated rice fields with experimental nitrogen (N) amendments. We found rates of soil C turnover were associated with nutrient stoichiometry and phosphorus (P) availability at ecosystem, community, and organism scales. At the ecosystem scale, soil C turnover was highest in mineral soils with lower C content and N:P ratios, and was positively correlated with soil inorganic P. Effects of N fertilization on soil C cycling also appeared to be mediated by soil P availability, while microbial community composition (by 16S rRNA sequencing) was not altered by N addition. Microbial communities varied along the soil C gradient, corresponding with highly covariant soil %C, N:P ratios, C quality, and carbon turnover. In contrast, we observed unambiguous shifts in microbial community function, imputed from taxonomy and directly assessed by shotgun sequenced metagenomes. The abundance of genes for carbohydrate utilization decreased with increasing soil C (and declining C turnover), while genes for aromatic C uptake, N fixation and P scavenging increased along with potential incorporation of C into biomass pools. Ecosystem and community-scale associations between C and nutrient substrate availability were also reflected in patterns of resource allocation among individual genomes (imputed and assembled). Microbes associated with higher rates of soil C turnover harbored more genes for carbohydrate utilization, fewer genes for obtaining energetically costly forms of C, N and P, more ribosomal RNA gene copies, and potentially lower C use efficiency. We suggest genome clustering by functional gene suites might

  6. Rice SPX-Major Facility Superfamily3, a Vacuolar Phosphate Efflux Transporter, Is Involved in Maintaining Phosphate Homeostasis in Rice1[OPEN

    PubMed Central

    Ying, Yinghui; Wang, Shoudong; Secco, David; Liu, Yu; Whelan, James; Tyerman, Stephen D.; Shou, Huixia

    2015-01-01

    To maintain a stable cytosol phosphate (Pi) concentration, plant cells store Pi in their vacuoles. When the Pi concentration in the cytosol decreases, Pi is exported from the vacuole into the cytosol. This export is mediated by Pi transporters on the tonoplast. In this study, we demonstrate that SYG1, PHO81, and XPR1 (SPX)-Major Facility Superfamily (MFS) proteins have a similar structure with yeast (Saccharomyces cerevisiae) low-affinity Pi transporters Phosphatase87 (PHO87), PHO90, and PHO91. OsSPX-MFS1, OsSPX-MFS2, and OsSPX-MFS3 all localized on the tonoplast of rice (Oryza sativa) protoplasts, even in the absence of the SPX domain. At high external Pi concentration, OsSPX-MFS3 could partially complement the yeast mutant strain EY917 under pH 5.5, which lacks all five Pi transporters present in yeast. In oocytes, OsSPX-MFS3 was shown to facilitate Pi influx or efflux depending on the external pH and Pi concentrations. In contrast to tonoplast localization in plants cells, OsSPX-MFS3 was localized to the plasma membrane when expressed in both yeast and oocytes. Overexpression of OsSPX-MFS3 results in decreased Pi concentration in the vacuole of rice tissues. We conclude that OsSPX-MFS3 is a low-affinity Pi transporter that mediates Pi efflux from the vacuole into cytosol and is coupled to proton movement. PMID:26424157

  7. Comparative impacts of two major hurricane seasons on the Neuse River and western Pamlico Sound ecosystems

    PubMed Central

    Burkholder, JoAnn; Eggleston, David; Glasgow, Howard; Brownie, Cavell; Reed, Robert; Janowitz, Gerald; Posey, Martin; Melia, Greg; Kinder, Carol; Corbett, Reide; Toms, David; Alphin, Troy; Deamer, Nora; Springer, Jeffrey

    2004-01-01

    Ecosystem-level impacts of two hurricane seasons were compared several years after the storms in the largest lagoonal estuary in the U.S., the Albemarle–Pamlico Estuarine System. A segmented linear regression flow model was developed to compare mass-water transport and nutrient loadings to a major artery, the Neuse River Estuary (NRE), and to estimate mean annual versus storm-related volume delivery to the NRE and Pamlico Sound. Significantly less water volume was delivered by Hurricane Fran (1996), but massive fish kills occurred in association with severe dissolved oxygen deficits and high contaminant loadings (total nitrogen, total phosphorus, suspended solids, and fecal bacteria). The high water volume of the second hurricane season (Hurricanes Dennis, Floyd, and Irene in 1999) delivered generally comparable but more dilute contaminant loads, and no major fish kills were reported. There were no discernable long-term adverse impacts on water quality. Populations of undesirable organisms, such as toxic dinoflagellates, were displaced down-estuary to habitats less conducive for growth. The response of fisheries was species-dependent: there was no apparent impact of the hurricanes on commercial landings of bivalve molluscs or shrimp. In contrast, interacting effects of hurricane floodwaters in 1999 and intensive fishing pressure led to striking reductions in blue crabs. Overall, the data support the premise that, in shallow estuaries frequently disturbed by hurricanes, there can be relatively rapid recovery in water quality and biota, and benefit from the scouring activity of these storms. PMID:15199179

  8. Comparative impacts of two major hurricane seasons on the Neuse River and western Pamlico Sound ecosystems.

    PubMed

    Burkholder, JoAnn; Eggleston, David; Glasgow, Howard; Brownie, Cavell; Reed, Robert; Janowitz, Gerald; Posey, Martin; Melia, Greg; Kinder, Carol; Corbett, Reide; Toms, David; Alphin, Troy; Deamer, Nora; Springer, Jeffrey

    2004-06-22

    Ecosystem-level impacts of two hurricane seasons were compared several years after the storms in the largest lagoonal estuary in the U.S., the Albemarle-Pamlico Estuarine System. A segmented linear regression flow model was developed to compare mass-water transport and nutrient loadings to a major artery, the Neuse River Estuary (NRE), and to estimate mean annual versus storm-related volume delivery to the NRE and Pamlico Sound. Significantly less water volume was delivered by Hurricane Fran (1996), but massive fish kills occurred in association with severe dissolved oxygen deficits and high contaminant loadings (total nitrogen, total phosphorus, suspended solids, and fecal bacteria). The high water volume of the second hurricane season (Hurricanes Dennis, Floyd, and Irene in 1999) delivered generally comparable but more dilute contaminant loads, and no major fish kills were reported. There were no discernable long-term adverse impacts on water quality. Populations of undesirable organisms, such as toxic dinoflagellates, were displaced down-estuary to habitats less conducive for growth. The response of fisheries was species-dependent: there was no apparent impact of the hurricanes on commercial landings of bivalve molluscs or shrimp. In contrast, interacting effects of hurricane floodwaters in 1999 and intensive fishing pressure led to striking reductions in blue crabs. Overall, the data support the premise that, in shallow estuaries frequently disturbed by hurricanes, there can be relatively rapid recovery in water quality and biota, and benefit from the scouring activity of these storms. PMID:15199179

  9. Interacting Factors Driving a Major Loss of Large Trees with Cavities in a Forest Ecosystem

    PubMed Central

    Lindenmayer, David B.; Blanchard, Wade; McBurney, Lachlan; Blair, David; Banks, Sam; Likens, Gene E.; Franklin, Jerry F.; Laurance, William F.; Stein, John A. R.; Gibbons, Philip

    2012-01-01

    Large trees with cavities provide critical ecological functions in forests worldwide, including vital nesting and denning resources for many species. However, many ecosystems are experiencing increasingly rapid loss of large trees or a failure to recruit new large trees or both. We quantify this problem in a globally iconic ecosystem in southeastern Australia – forests dominated by the world's tallest angiosperms, Mountain Ash (Eucalyptus regnans). Tree, stand and landscape-level factors influencing the death and collapse of large living cavity trees and the decay and collapse of dead trees with cavities are documented using a suite of long-term datasets gathered between 1983 and 2011. The historical rate of tree mortality on unburned sites between 1997 and 2011 was >14% with a mortality spike in the driest period (2006–2009). Following a major wildfire in 2009, 79% of large living trees with cavities died and 57–100% of large dead trees were destroyed on burned sites. Repeated measurements between 1997 and 2011 revealed no recruitment of any new large trees with cavities on any of our unburned or burned sites. Transition probability matrices of large trees with cavities through increasingly decayed condition states projects a severe shortage of large trees with cavities by 2039 that will continue until at least 2067. This large cavity tree crisis in Mountain Ash forests is a product of: (1) the prolonged time required (>120 years) for initiation of cavities; and (2) repeated past wildfires and widespread logging operations. These latter factors have resulted in all landscapes being dominated by stands ≤72 years and just 1.16% of forest being unburned and unlogged. We discuss how the features that make Mountain Ash forests vulnerable to a decline in large tree abundance are shared with many forest types worldwide. PMID:23071486

  10. Interacting factors driving a major loss of large trees with cavities in a forest ecosystem.

    PubMed

    Lindenmayer, David B; Blanchard, Wade; McBurney, Lachlan; Blair, David; Banks, Sam; Likens, Gene E; Franklin, Jerry F; Laurance, William F; Stein, John A R; Gibbons, Philip

    2012-01-01

    Large trees with cavities provide critical ecological functions in forests worldwide, including vital nesting and denning resources for many species. However, many ecosystems are experiencing increasingly rapid loss of large trees or a failure to recruit new large trees or both. We quantify this problem in a globally iconic ecosystem in southeastern Australia--forests dominated by the world's tallest angiosperms, Mountain Ash (Eucalyptus regnans). Tree, stand and landscape-level factors influencing the death and collapse of large living cavity trees and the decay and collapse of dead trees with cavities are documented using a suite of long-term datasets gathered between 1983 and 2011. The historical rate of tree mortality on unburned sites between 1997 and 2011 was >14% with a mortality spike in the driest period (2006-2009). Following a major wildfire in 2009, 79% of large living trees with cavities died and 57-100% of large dead trees were destroyed on burned sites. Repeated measurements between 1997 and 2011 revealed no recruitment of any new large trees with cavities on any of our unburned or burned sites. Transition probability matrices of large trees with cavities through increasingly decayed condition states projects a severe shortage of large trees with cavities by 2039 that will continue until at least 2067. This large cavity tree crisis in Mountain Ash forests is a product of: (1) the prolonged time required (>120 years) for initiation of cavities; and (2) repeated past wildfires and widespread logging operations. These latter factors have resulted in all landscapes being dominated by stands ≤72 years and just 1.16% of forest being unburned and unlogged. We discuss how the features that make Mountain Ash forests vulnerable to a decline in large tree abundance are shared with many forest types worldwide. PMID:23071486

  11. Combination Patterns of Major R Genes Determine the Level of Resistance to the M. oryzae in Rice (Oryza sativa L.)

    PubMed Central

    Yu, Ling; Pan, Cunhong; Li, Yuhong; Zhang, Xiaoxiang; Liu, Guangqing; Dai, Zhengyuan; Pan, Xuebiao; Li, Aihong

    2015-01-01

    Rice blast caused by Magnaporthe oryzae is the most devastating disease of rice and poses a serious threat to world food security. In this study, the distribution and effectiveness of 18 R genes in 277 accessions were investigated based on pathogenicity assays and molecular markers. The results showed that most of the accessions exhibited some degree of resistance (resistance frequency, RF >50%). Accordingly, most of the accessions were observed to harbor two or more R genes, and the number of R genes harbored in accessions was significantly positively correlated with RF. Some R genes were demonstrated to be specifically distributed in the genomes of rice sub-species, such as Pigm, Pi9, Pi5 and Pi1, which were only detected in indica-type accessions, and Pik and Piz, which were just harbored in japonica-type accessions. By analyzing the relationship between R genes and RF using a multiple stepwise regression model, the R genes Pid3, Pi5, Pi9, Pi54, Pigm and Pit were found to show the main effects against M. oryzae in indica-type accessions, while Pita, Pb1, Pik, Pizt and Pia were indicated to exhibit the main effects against M. oryzae in japonica-type accessions. Principal component analysis (PCA) and cluster analysis revealed that combination patterns of major R genes were the main factors determining the resistance of rice varieties to M. oryzae, such as ‘Pi9+Pi54’, ‘Pid3+Pigm’, ‘Pi5+Pid3+Pigm’, ‘Pi5+Pi54+Pid3+Pigm’, ‘Pi5+Pid3’ and ‘Pi5+Pit+Pid3’ in indica-type accessions and ‘Pik+Pib’, ‘Pik+Pita’, ‘Pik+Pb1’, ‘Pizt+Pia’ and ‘Pizt+Pita’ in japonica-type accessions, which were able to confer effective resistance against M. oryzae. The above results provide good theoretical support for the rational utilization of combinations of major R genes in developing rice cultivars with broad-spectrum resistance. PMID:26030358

  12. Simulation of future global warming scenarios in rice paddies with an open-field ecosystem warming facility

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice (Oryza sativa L.) in Yangtze River Valley (YRV) suffered serious yield losses in 2003 when extreme heatwave (HW), hampered rice reproductive growth phase (RGP). Climate change induced extreme and asymmetrical fluctuations in temperature during heat sensitive stage of rice growth cycle, i.e., RG...

  13. Differential analyses of major allergen proteins in wild-type rice and rice producing a fragment of anti-rotavirus antibody.

    PubMed

    Yuki, Yoshikazu; Kurokawa, Shiho; Kozuka-Hata, Hiroko; Tokuhara, Daisuke; Mejima, Mio; Kuroda, Masaharu; Oyama, Masaaki; Nishimaki-Mogami, Tomoko; Teshima, Reiko; Kiyono, Hiroshi

    2016-04-01

    To develop oral antibody therapy against rotavirus infection, we previously produced a recombinant fragment of llama heavy-chain antibody to rotavirus (ARP1) in rice seeds (MucoRice-ARP1). We intend to use a purification-free rice powder for clinical application but needed to check whether MucoRice-ARP1 had increased levels of known allergen proteins. For this purpose, we used two-dimensional fluorescence difference gel electrophoresis to compare the allergen protein levels in MucoRice-ARP1 and wild-type rice. We detected no notable differences, except in the levels of α-amylase/trypsin inhibitor-like family proteins. Because by this approach we could not completely separate ARP1 from the proteins of this family, we confirmed the absence of changes in the levels of these allergens by using shotgun mass spectrometry as well as immunoblot. By using immunoelectron microscopy, we also showed that RAG2, a member of the α-amylase/trypsin inhibitor-like protein family, was relocated from protein bodies II to the plasma membrane or cell wall in MucoRice-ARP1 seed. The relocation did not affect the level of RAG2. We demonstrated that most of the known rice allergens were not considerably upregulated by the genetic modification in MucoRice-ARP1. Our data suggest that MucoRice-ARP1 is a potentially safe oral antibody for clinical application. PMID:26851506

  14. Isotopic Disequilibrium Between Carbon Fixed and Released in a Rice Paddy Ecosystem as Influenced by Methanogenesis From CO2 Under Anaerobic Conditions

    NASA Astrophysics Data System (ADS)

    Han, G. H.; Yoshikoshi, H.; Nagai, H.; Yamada, T.; Ono, K.; Miyata, A.; Harazono, Y.

    2004-12-01

    Stable carbon isotope ratios of various ecosystem components and ecosystem respiration (\\deltaR) were measured in a Japanese rice paddy. An automated air sampling system was used to collect nighttime air samples to estimate \\deltaR by means of Keeling plot. Throughout the growing season in 2003, significantly (3\\permil to 4\\permil) higher \\delta13C values were observed in \\deltaR than those observed in plant tissue samples, indicating a strong decoupling process for carbon assimilated and respired in the ecosystem. It is well known that production of methane from CO2 exhibits a larger isotope fractionation than that can be found in equilibration of CO2 with soil water. CO2 entrapped in soil showed 5.5\\permil to 7.5\\permil higher \\delta13C values than \\deltaR. Given these isotopic differences, we partitioned total ecosystem respiration into plant respiration and soil (including root) respiration components with an assumption that there is no isotope fractionation associated with respiratory processes of rice plant. The estimated proportion of soil respiration to total ecosystem respiration was about 30% under flooded conditions, but increased to about 40% by floodwater drainage. The partitioned respiratory fluxes from soil contributed to reducing the discrepancy between measured plant biomass increase and accumulated net ecosystem exchange (NEE) for the entire growing season. Partitioning NEE into photosynthetic assimilation and ecosystem respiration based on the isoflux approach revealed that floodwater drainage increased daytime respiratory fluxes greater than the estimated respiratory fluxes from an exponential relationship between nocturnal NEE and air temperature.

  15. Transgenic indica rice lines, expressing Brassica juncea Nonexpressor of pathogenesis-related genes 1 (BjNPR1), exhibit enhanced resistance to major pathogens.

    PubMed

    Sadumpati, Vijayakumar; Kalambur, Muralidharan; Vudem, Dashavantha Reddy; Kirti, Pulugurtha Bharadwaja; Khareedu, Venkateswara Rao

    2013-07-10

    Brassica juncea Nonexpressor of pathogenesis-related genes 1 (BjNPR1) has been introduced into commercial indica rice varieties by Agrobacterium-mediated genetic transformation. Transgenic rice plants were regenerated from the phosphinothricin-resistant calli obtained after co-cultivation with Agrobacterium strain LBA4404 harbouring Ti plasmid pSB111-bar-BjNPR1. Molecular analyses confirmed the stable integration and expression of BjNPR1 in various transgenic rice lines. Transgenes NPR1 and bar were stably inherited and disclosed co-segregation in subsequent generations in a Mendelian fashion. Homozygous transgenic rice lines expressing BjNPR1 protein displayed enhanced resistance to rice blast, sheath blight and bacterial leaf blight diseases. Rice transformants with higher levels of NPR1 revealed notable increases in plant height, panicle length, flag-leaf length, number of seeds/panicle and seed yield/plant as compared to the untransformed plants. The overall results amply demonstrate the profound impact of BjNPR1 in imparting resistance against major pathogens of rice. The multipotent BjNPR1, as such, seems promising as a prime candidate gene to fortify crop plants with durable resistance against various pathogens. PMID:23664883

  16. In Inland China, Rice, Rather than Fish, Is the Major Pathway for Methylmercury Exposure

    PubMed Central

    Zhang, Hua; Feng, Xinbin; Larssen, Thorjørn; Qiu, Guangle; Vogt, Rolf D.

    2010-01-01

    Background Fish consumption is considered the primary pathway of methylmercury (MeHg) exposure for most people in the world. However, in the inland regions of China, most of the residents eat little fish, but they live in areas where a significant amount of mercury (Hg) is present in the environment. Objectives We assessed concentrations of total Hg and MeHg in samples of water, air, agricultural products, and other exposure media to determine the main exposure pathway of Hg in populations in inland China. Methods We selected Guizhou Province for our study because it is highly contaminated with Hg and therefore is representative of other Hg-contaminated areas in China. We selected four study locations in Guizhou Province: three that represent typical environments with severe Hg pollution [due to Hg mining and smelting (Wanshan), traditional zinc smelting (recently closed; Weining), and heavy coal-based industry (Qingzhen)], and a village in a remote nature reserve (Leigong). Results The probable daily intake (PDI) of MeHg for an adult population based on 60 kg body weight (bw) was considerably higher in Wanshan than in the other three locations. With an average PDI of 0.096 μg/kg bw/day (range, 0.015–0.45 μg/kg bw/day), approximately 34% of the inhabitants in Wanshan exceeded the reference dose of 0.1 μg/kg bw/day established by the U.S. Environmental Protection Agency. The PDI of MeHg for residents in the three other locations were all well below 0.1 μg/kg bw/day (averages from 0.017 to 0.023 μg/kg bw/day, with a maximum of 0.095 μg/kg bw/day). In all four areas, rice consumption accounted for 94–96% of the PDI of MeHg. Conclusion We found that rice consumption is by far the most important MeHg exposure route; however, most of the residents (except those in Hg-mining areas) have low PDIs of MeHg. PMID:20378486

  17. Nucleotide Diversity Analysis of Three Major Bacterial Blight Resistance Genes in Rice

    PubMed Central

    Bimolata, Waikhom; Kumar, Anirudh; M, Sai Kiran Reddy; Sundaram, Raman Meenakshi; Laha, Gouri Sankar; Qureshi, Insaf Ahmed; Ghazi, Irfan Ahmad

    2015-01-01

    Nucleotide sequence polymorphisms among R gene alleles influence the process of co-evolutionary interaction between host and pathogen by shaping the response of host plants towards invading pathogens. Here, we present the DNA sequence polymorphisms and diversities present among natural alleles of three rice bacterial blight resistance genes, Xa21, Xa26 and xa5. The diversity was examined across different wild relatives and cultivars of Oryza species. Functional significance of selected alleles was evaluated through semi-quantitative reverse transcription polymerase chain reaction and real time PCR. The greatest nucleotide diversity and singleton variable sites (SVS) were present in Xa26 (π = 0.01958; SVS = 182) followed by xa5 and Xa21 alleles. The highest frequency of single nucleotide polymorphisms were observed in Xa21 alleles and least in xa5. Transition bias was observed in all the genes and ‘G’ to ‘A’ transitions were more favored than other form of transitions. Neutrality tests failed to show the presence of selection at these loci, though negative Tajima’s D values indicate the presence of a rare form of polymorphisms. At the interspecies level, O. nivara exhibited more diversity than O. sativa. We have also identified two nearly identical resistant alleles of xa5 and two sequentially identical alleles of Xa21. The alleles of xa5 showed basal levels of expression while Xa21 alleles were functionally not expressed. PMID:25807168

  18. Gene Expression Analysis of Rice Seedling under Potassium Deprivation Reveals Major Changes in Metabolism and Signaling Components

    PubMed Central

    Shankar, Alka; Singh, Amarjeet; Kanwar, Poonam; Srivastava, Ashish Kumar; Pandey, Amita; Suprasanna, Penna; Kapoor, Sanjay; Pandey, Girdhar K.

    2013-01-01

    Plant nutrition is one of the important areas for improving the yield and quality in crops as well as non-crop plants. Potassium is an essential plant nutrient and is required in abundance for their proper growth and development. Potassium deficiency directly affects the plant growth and hence crop yield and production. Recently, potassium-dependent transcriptomic analysis has been performed in the model plant Arabidopsis, however in cereals and crop plants; such a transcriptome analysis has not been undertaken till date. In rice, the molecular mechanism for the regulation of potassium starvation responses has not been investigated in detail. Here, we present a combined physiological and whole genome transcriptomic study of rice seedlings exposed to a brief period of potassium deficiency then replenished with potassium. Our results reveal that the expressions of a diverse set of genes annotated with many distinct functions were altered under potassium deprivation. Our findings highlight altered expression patterns of potassium-responsive genes majorly involved in metabolic processes, stress responses, signaling pathways, transcriptional regulation, and transport of multiple molecules including K+. Interestingly, several genes responsive to low-potassium conditions show a reversal in expression upon resupply of potassium. The results of this study indicate that potassium deprivation leads to activation of multiple genes and gene networks, which may be acting in concert to sense the external potassium and mediate uptake, distribution and ultimately adaptation to low potassium conditions. The interplay of both upregulated and downregulated genes globally in response to potassium deprivation determines how plants cope with the stress of nutrient deficiency at different physiological as well as developmental stages of plants. PMID:23922980

  19. Rice Nutrition

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter presents the symptoms of deficiency and toxicity of the major and minor mineral nutrients in rice, as well as a current synopsis of nutrient transporters and their regulation. The availability of sequences from the recently completed rice genome has furthered the knowledge of how plants...

  20. Diversity and population dynamics of pests and predators in irrigated rice fields with treated and untreated pesticide.

    PubMed

    Rattanapun, W

    2012-01-01

    The monitoring of rice pests and their predators in pesticide untreated and treated rice fields was conducted at the southern of Thailand. Twenty-two species in 15 families and 6 orders of rice pests were sampled from untreated rice field. For treated rice field, 22 species in 14 families and 5 orders of rice pest were collected. Regardless of treatment type, dominant species and individual number of rice pest varied to physiological stage of rice. Lepidopteran pests had highest infestation during the vegetative stage of rice growth, while hemipteran pests composed of hopper species (Hemipetra: Auchenorrhyncha) and heteropteran species (Hemiptera: Heteroptera) were dominant groups during the reproductive stage and grain formation and ripening stage of rice growth. In contrast, dominant species of predator did not change throughout rice growing season. There were 35 species in 25 families and seven orders and 40 species in 29 families and seven orders of predators collected from untreated and treated rice field, respectively. Major predators of both rice fields were Micraspis discolor (Fabricius) (Coleoptera: Coccinellidae), Tetragnatha sp. (Araneae: Tetragnathidae) and Agriocnemis pygmaea Rambur (Odonata: Agrionidae). The population dynamic of predators were not related with rice pest population in both treatments. However, the fluctuation of population pattern of rice pests in the untreated treatment were more distinctly synchronized with their predators than that of the treated treatment. There were no significant differences in the total number of rice pest and predator between two treatments at vegetative and reproductive stages of rice growth. Untreated rice field had a higher population number of predator and a lower population number of rice pest than that of treated rice field during grain formation and ripening stages. These results indicated the ago-ecosystem balance in rice fields could be produced through minimal pesticide application, in order to allow

  1. 13Carbon isotope discrimination in major C4 weeds of rice-implications for root interference studies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Assessing below ground plant interference in rice has been difficult in the past because separation of intertwined weed and crop roots is nearly impossible. A simple 13C depletion method was previously developed for simultaneous quantification of barnyardgrass and rice roots in flooded fields. Thi...

  2. Identification and functional characterization of silicon transporters in soybean using comparative genomics of major intrinsic proteins in Arabidopsis and rice.

    PubMed

    Deshmukh, Rupesh K; Vivancos, Julien; Guérin, Valérie; Sonah, Humira; Labbé, Caroline; Belzile, François; Bélanger, Richard R

    2013-11-01

    Silicon (Si) confers several benefits to many plant species when absorbed as silicic acid through nodulin 26-like intrinsic proteins (NIPs). The NIPs belong to major intrinsic protein (MIP) family, members of which form channels with high selectivity to control transport of water and different solutes. Here, comparative genomic analysis of the MIPs was performed to investigate the presence of Si transporter MIPs in soybean. Thorough analysis of phylogeny, gene organization, transcriptome profiling and protein modeling was performed to characterize MIPs in rice, Arabidopsis and soybean. Based on several attributes, two putative Si transporter genes, GmNIP2-1 and GmNIP2-2, were identified, characterized and cloned from soybean. Expression of both genes was detected in shoot and root tissues, and decreased as Si increased. The protein encoded by GmNIP2-2 showed functionality for Si transport when expressed in Xenopus oocytes, thus confirming the genetic capability of soybean to absorb the element. Comparative analysis of MIPs in plants provides opportunities to decipher gene evolution, functionality and selectivity of nutrient uptake mechanisms. Exploitation of this strategy has helped to uncover unique features of MIPs in soybean. The identification and functional characterization of Si transporters can be exploited to optimize the benefits that plants can derive from Si absorption. PMID:23771580

  3. Development of sustainable groundwater extraction practices for a major superficial aquifer supporting a groundwater dependent ecosystem

    NASA Astrophysics Data System (ADS)

    Smettem, K. R.; Froend, R.; Davies, M.; Stock, B.; Martin, M.; Robertson, C.; Eamus, D.

    2010-12-01

    Throughout Australia many groundwater dependent ecosystems have been adversely affected by unsympathetic water abstraction practices. In Western Australia, the largest single supply of drinking water for the city of Perth is a superficial aquifer known as the Gnangara Groundwater Mound, located over an area of approximately 2200 km2 within and to the north of the city on the coastal plain. The groundwater resource supplies 60% of Perth’s pubic drinking water supply and 85% of total water demand for all users. Much of the mound is overlain by phreatophytic Banksia woodland that is susceptible to drought stress and death if the root system is separated from the unconfined aquifer for prolonged periods over the hot, dry Mediterranean summer. Drought stress has been exacerbated by diminished rainfall due to a changing climate regime. The aim of this research is to develop guidelines for sustainable groundwater abstraction (timing and volume) that will maintain the long term integrity of the ecosystem and recover up to 5GL/yr from existing borefields. We seek to investigate whether a change in abstraction regime, from ‘peak demand’ summer pumping to winter pumping allows groundwater levels to recover sufficiently prior to summer, thereby maintaining a healthy vegetation system. Hydrological and plant water status parameters were monitored over two winters at research sites with an initial depth to groundwater of less than 5m. During winter and spring, groundwater abstraction at a reduced capacity resulted in a 0.75m drawdown. Operation of the bores did not adversely impact the water status of phreatophytic Banksia at the study sites relative to control sites. Analysis of plant water source partitioning indicated that plants exposed to the winter drawdown were sustained by unsaturated zone soil moisture storage replenished by winter rainfall. When pumping ceased, the water table rose rapidly and plants utilised more groundwater during late spring and summer as the

  4. Effects of tillage practices and straw returning methods on greenhouse gas emissions and net ecosystem economic budget in rice-wheat cropping systems in central China

    NASA Astrophysics Data System (ADS)

    Zhang, Z. S.; Guo, L. J.; Liu, T. Q.; Li, C. F.; Cao, C. G.

    2015-12-01

    Significant efforts have been devoted to assess the effects of conservation tillage (no-tillage [NT] and straw returning) on greenhouse gas (GHG) emissions, global warming potential (GWP), greenhouse gas intensity (GHGI), and net economic budget in crop growing seasons. However, only a few studies have evaluated the effects conservation tillage on the net ecosystem economic budget (NEEB) in a rice-wheat cropping system. Therefore, a split-plot field experiment was performed to comprehensively evaluate the effects of tillage practices (i.e., conventional intensive tillage [CT] and NT) and straw returning methods (i.e., straw returning or removal of preceding crop) on the soil total organic carbon (TOC), GHG emissions, GWP, GHGI, and NEEB of sandy loam soil in a rice-wheat cropping system in central China. Conservation tillage did not affect rice and wheat grain yields. Compared with CT and straw removal, NT and straw returning significantly increased the TOC of 0-5 cm soil layer by 2.9% and 7.8%, respectively. However, the TOC of 0-20 cm soil layer was not affected by tillage practices and straw returning methods. NT did not also affect the N2O emissions during the rice and wheat seasons; NT significantly decreased the annual CH4 emissions by 7.5% and the annual GWP by 7.8% compared with CT. Consequently, GHGI under NT was reduced by 8.1%. Similar to NT, straw returning did not affect N2O emissions during the rice and wheat seasons. Compared with straw removal, straw returning significantly increased annual CH4 emissions by 35.0%, annual GWP by 32.0%, and annual GHGI by 31.1%. Straw returning did not also affect NEEB; by contrast, NT significantly increased NEEB by 15.6%. NT without straw returning resulted in the lowest GWP, the lowest GHGI, and the highest NEEB among all treatments. This finding suggested that NT without straw returning may be applied as a sustainable technology to increase economic and environmental benefits. Nevertheless, environmentally straw

  5. Wet meadow ecosystems contribute the majority of overwinter soil respiration from snow-scoured alpine tundra

    NASA Astrophysics Data System (ADS)

    Knowles, John F.; Blanken, Peter D.; Williams, Mark W.

    2016-04-01

    We measured soil respiration across a soil moisture gradient ranging from dry to wet snow-scoured alpine tundra soils throughout three winters and two summers. In the absence of snow accumulation, soil moisture variability was principally determined by the combination of mesotopographical hydrological focusing and shallow subsurface permeability, which resulted in a patchwork of comingled ecosystem types along a single alpine ridge. To constrain the subsequent carbon cycling variability, we compared three measures of effective diffusivity and three methods to calculate gradient method soil respiration from four typical vegetation communities. Overwinter soil respiration was primarily restricted to wet meadow locations, and a conservative estimate of the rate of overwinter soil respiration from snow-scoured wet meadow tundra was 69-90% of the maximum carbon dioxide (CO2) respired by seasonally snow-covered soils within this same catchment. This was attributed to higher overwinter soil temperatures at wet meadow locations relative to fellfield, dry meadow, and moist meadow communities, which supported liquid water and heterotrophic respiration throughout the winter. These results were corroborated by eddy covariance-based measurements that demonstrated an average of 272 g C m-2 overwinter carbon loss during the study period. As a result, we updated a conceptual model of soil respiration versus snow cover to express the potential for soil respiration variability from snow-scoured alpine tundra.

  6. Soil organic horizons as a major source for radiocesium biorecycling in forest ecosystems.

    PubMed

    Kruyts, Nathalie; Delvaux, Bruno

    2002-01-01

    Here we review some of the main processes and key parameters affecting the mobility of radiocesium in soils of semi-natural areas. We further illustrate them in a collection of soil surface horizons which largely differ in their organic matter contents. In soils, specific retention of radiocesium occurs in a very small number of sorbing sites, which are the frayed edge sites (FES) born out of weathered micaceous minerals. The FES abundance directly governs the mobility of trace Cs in the rhizosphere and thus its transfer from soil to plant. Here, we show that the accumulation of organic matter in topsoils can exert a dilution of FES-bearing minerals in the thick humus of some forest soils. Consequently, such accumulation significantly contributes to increasing 137Cs soil-to-plant transfer. Potassium depletion and extensive exploration of the organic horizons by plant roots can further enhance the contamination hazard. As humus thickness depends on both ecological conditions and forest management. our observations support the following ideas: (1) forest ecosystems can be classified according to their sensitivity to radiocesium bio-recycling, (2) specific forest management could be searched to decrease such bio-recycling. PMID:11814165

  7. Water quality of four major lakes in Mississippi, USA: Impacts on human and aquatic ecosystem health

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Harmful algal blooms (HABs), harmful microorganisms (pathogens) and toxic metals represent three major agents of water quality deterioration. Better water quality is of utmost importance to water bodies that provide recreational opportunities, even better quality is expected in the water bodies that...

  8. Confirming a major QTL and finding additional loci responsible for field resistance to brown spot (Bipolaris oryzae) in rice

    PubMed Central

    Sato, Hiroyuki; Matsumoto, Kengo; Ota, Chihiro; Yamakawa, Tomohiro; Kihara, Junichi; Mizobuchi, Ritsuko

    2015-01-01

    Brown spot is a devastating rice disease. Quantitative resistance has been observed in local varieties (e.g., ‘Tadukan’), but no economically useful resistant variety has been bred. Using quantitative trait locus (QTL) analysis of recombinant inbred lines (RILs) from ‘Tadukan’ (resistant) × ‘Hinohikari’ (susceptible), we previously found three QTLs (qBS2, qBS9, and qBS11) that conferred resistance in seedlings in a greenhouse. To confirm their effect, the parents and later generations of RILs were transplanted into paddy fields where brown spot severely occurred. Three new resistance QTLs (qBSfR1, qBSfR4, and qBSfR11) were detected on chromosomes 1, 4, and 11, respectively. The ‘Tadukan’ alleles at qBSfR1 and qBSfR11 and the ‘Hinohikari’ allele at qBSfR4 increased resistance. The major QTL qBSfR11 coincided with qBS11 from the previous study, whereas qBSfR1 and qBSfR4 were new but neither qBS2 nor qBS9 were detected. To verify the qBSfR1 and qBSfR11 ‘Tadukan’ resistance alleles, near-isogenic lines (NILs) with one or both QTLs in a susceptible background (‘Koshihikari’) were evaluated under field conditions. NILs with qBSfR11 acquired significant field resistance; those with qBSfR1 did not. This confirms the effectiveness of qBSfR11. Genetic markers flanking qBSfR11 will be powerful tools for marker-assisted selection to improve brown spot resistance. PMID:26069447

  9. Confirming a major QTL and finding additional loci responsible for field resistance to brown spot (Bipolaris oryzae) in rice.

    PubMed

    Sato, Hiroyuki; Matsumoto, Kengo; Ota, Chihiro; Yamakawa, Tomohiro; Kihara, Junichi; Mizobuchi, Ritsuko

    2015-03-01

    Brown spot is a devastating rice disease. Quantitative resistance has been observed in local varieties (e.g., 'Tadukan'), but no economically useful resistant variety has been bred. Using quantitative trait locus (QTL) analysis of recombinant inbred lines (RILs) from 'Tadukan' (resistant) × 'Hinohikari' (susceptible), we previously found three QTLs (qBS2, qBS9, and qBS11) that conferred resistance in seedlings in a greenhouse. To confirm their effect, the parents and later generations of RILs were transplanted into paddy fields where brown spot severely occurred. Three new resistance QTLs (qBSfR1, qBSfR4, and qBSfR11) were detected on chromosomes 1, 4, and 11, respectively. The 'Tadukan' alleles at qBSfR1 and qBSfR11 and the 'Hinohikari' allele at qBSfR4 increased resistance. The major QTL qBSfR11 coincided with qBS11 from the previous study, whereas qBSfR1 and qBSfR4 were new but neither qBS2 nor qBS9 were detected. To verify the qBSfR1 and qBSfR11 'Tadukan' resistance alleles, near-isogenic lines (NILs) with one or both QTLs in a susceptible background ('Koshihikari') were evaluated under field conditions. NILs with qBSfR11 acquired significant field resistance; those with qBSfR1 did not. This confirms the effectiveness of qBSfR11. Genetic markers flanking qBSfR11 will be powerful tools for marker-assisted selection to improve brown spot resistance. PMID:26069447

  10. QTLs for Resistance to Major Rice Diseases Exacerbated by Global Warming: Brown Spot, Bacterial Seedling Rot, and Bacterial Grain Rot.

    PubMed

    Mizobuchi, Ritsuko; Fukuoka, Shuichi; Tsushima, Seiya; Yano, Masahiro; Sato, Hiroyuki

    2016-12-01

    In rice (Oryza sativa L.), damage from diseases such as brown spot, caused by Bipolaris oryzae, and bacterial seedling rot and bacterial grain rot, caused by Burkholderia glumae, has increased under global warming because the optimal temperature ranges for growth of these pathogens are relatively high (around 30 °C). Therefore, the need for cultivars carrying genes for resistance to these diseases is increasing to ensure sustainable rice production. In contrast to the situation for other important rice diseases such as blast and bacterial blight, no genes for complete resistance to brown spot, bacterial seedling rot or bacterial grain rot have yet been discovered. Thus, rice breeders have to use partial resistance, which is largely influenced by environmental conditions. Recent progress in molecular genetics and improvement of evaluation methods for disease resistance have facilitated detection of quantitative trait loci (QTLs) associated with resistance. In this review, we summarize the results of worldwide screening for cultivars with resistance to brown spot, bacterial seedling rot and bacterial grain rot and we discuss the identification of QTLs conferring resistance to these diseases in order to provide useful information for rice breeding programs. PMID:27178300

  11. Modeled Sea Level Rise Impacts on Coastal Ecosystems at Six Major Estuaries on Florida's Gulf Coast: Implications for Adaptation Planning.

    PubMed

    Geselbracht, Laura L; Freeman, Kathleen; Birch, Anne P; Brenner, Jorge; Gordon, Doria R

    2015-01-01

    The Sea Level Affecting Marshes Model (SLAMM) was applied at six major estuaries along Florida's Gulf Coast (Pensacola Bay, St. Andrews/Choctawhatchee Bays, Apalachicola Bay, Southern Big Bend, Tampa Bay and Charlotte Harbor) to provide quantitative and spatial information on how coastal ecosystems may change with sea level rise (SLR) and to identify how this information can be used to inform adaption planning. High resolution LiDAR-derived elevation data was utilized under three SLR scenarios: 0.7 m, 1 m and 2 m through the year 2100 and uncertainty analyses were conducted on selected input parameters at three sites. Results indicate that the extent, spatial orientation and relative composition of coastal ecosystems at the study areas may substantially change with SLR. Under the 1 m SLR scenario, total predicted impacts for all study areas indicate that coastal forest (-69,308 ha; -18%), undeveloped dry land (-28,444 ha; -2%) and tidal flat (-25,556 ha; -47%) will likely face the greatest loss in cover by the year 2100. The largest potential gains in cover were predicted for saltmarsh (+32,922 ha; +88%), transitional saltmarsh (+23,645 ha; na) and mangrove forest (+12,583 ha; +40%). The Charlotte Harbor and Tampa Bay study areas were predicted to experience the greatest net loss in coastal wetlands The uncertainty analyses revealed low to moderate changes in results when some numerical SLAMM input parameters were varied highlighting the value of collecting long-term sedimentation, accretion and erosion data to improve SLAMM precision. The changes predicted by SLAMM will affect exposure of adjacent human communities to coastal hazards and ecosystem functions potentially resulting in impacts to property values, infrastructure investment and insurance rates. The results and process presented here can be used as a guide for communities vulnerable to SLR to identify and prioritize adaptation strategies that slow and/or accommodate the changes underway. PMID:26207914

  12. Betaproteobacteria Limnohabitans strains increase fecundity in the crustacean Daphnia magna: symbiotic relationship between major bacterioplankton and zooplankton in freshwater ecosystem.

    PubMed

    Peerakietkhajorn, Saranya; Kato, Yasuhiko; Kasalický, Vojtěch; Matsuura, Tomoaki; Watanabe, Hajime

    2016-09-01

    How symbioses between bacteria and aquatic animals influence food webs in freshwater ecosystems is a fundamental question in ecology. We investigated symbiosis between a crustacean zooplankton Daphnia magna and its dominant bacterial symbiont Limnohabitans, an abundant and globally distributed freshwater Betaproteobacteria. Aposymbiotic juvenile Daphnia were prepared and exposed to any of four Limnohabitans sp. - Limnohabitans strains DM1, 2KL-3, 2KL-7 and Limnohabitans planktonicus strain II-D5, all previously found in D. magna digestive tract or culture. Re-infected Daphnia were cultured until they produced the first clutch of juveniles. Limnohabitans strain DM1 and L. planktonicus strain II-D5 successfully re-infected Daphnia through single exposure at the first instar juvenile stage. In contrast to aposymbiotic Daphnia that produced non-viable juveniles, re-infected Daphnia produced viable juveniles and increased fecundity to levels of that of symbiotic Daphnia. Re-infected Daphnia did not increase their number of eggs nor growth rates. Limnohabitans strains 2KL-7 and 2KL-3 could not recover fecundity even in multiple exposures during culture. This study shows the functional evidence demonstrating that a single bacterium Limnohabitans regulates fecundity of the consumer Daphnia through symbiosis. Our results indicated that symbiotic relationship between major bacterioplankton and zooplankton is important for maintaining the population of zooplankton in freshwater ecosystems. PMID:26014379

  13. Rice ( Oryza) hemoglobins

    PubMed Central

    Arredondo-Peter, Raúl; Moran, Jose F.; Sarath, Gautam

    2014-01-01

    Hemoglobins (Hbs) corresponding to non-symbiotic (nsHb) and truncated (tHb) Hbs have been identified in rice ( Oryza). This review discusses the major findings from the current studies on rice Hbs. At the molecular level, a family of the nshb genes, consisting of hb1, hb2, hb3, hb4 and hb5, and a single copy of the thb gene exist in Oryza sativa var. indica and O. sativa var. japonica, Hb transcripts coexist in rice organs and Hb polypeptides exist in rice embryonic and vegetative organs and in the cytoplasm of differentiating cells. At the structural level, the crystal structure of rice Hb1 has been elucidated, and the structures of the other rice Hbs have been modeled. Kinetic analysis indicated that rice Hb1 and 2, and possibly rice Hb3 and 4, exhibit a very high affinity for O 2, whereas rice Hb5 and tHb possibly exhibit a low to moderate affinity for O 2. Based on the accumulated information on the properties of rice Hbs and data from the analysis of other plant and non-plant Hbs, it is likely that Hbs play a variety of roles in rice organs, including O 2-transport, O 2-sensing, NO-scavenging and redox-signaling. From an evolutionary perspective, an outline for the evolution of rice Hbs is available. Rice nshb and thb genes vertically evolved through different lineages, rice nsHbs evolved into clade I and clade II lineages and rice nshbs and thbs evolved under the effect of neutral selection. This review also reveals lacunae in our ability to completely understand rice Hbs. Primary lacunae are the absence of experimental information about the precise functions of rice Hbs, the properties of modeled rice Hbs and the cis-elements and trans-acting factors that regulate the expression of rice hb genes, and the partial understanding of the evolution of rice Hbs. PMID:25653837

  14. Rice and red rice interference. II. Rice response to population densities of three red rice (Oryza sativa) ecotypes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Red rice, which grows taller and produces more tillers than domestic rice and shatters most of its seeds early, is a major weed in many rice-growing areas of the world. Field experiments were conducted at Stuttgart, AR in 1997 and 1998 to evaluate the growth response of the Kaybonnet (KBNT) rice cul...

  15. Carbon storage increases by major forest ecosystems in tropical South America since the Last Glacial Maximum and the early Holocene

    NASA Astrophysics Data System (ADS)

    Behling, Hermann

    2002-06-01

    To study the carbon storage increase of major forest ecosystems in tropical South America, such as Amazon rain forest, Atlantic rain forest, semideciduous forest, and Araucaria forest, the Last Glacial Maximum (LGM) and the early Holocene vegetation cover were reconstructed by pollen records. Marked forest expansion points to a significant total carbon storage increase by tropical forests in South America since the LGM and the early Holocene. The Amazon rain forest expansion, about 39% in area, had 28.3×10 9 tC (+20%), the highest carbon storage increase since the LGM. The expansion of the other much smaller forest areas also had a significant carbon storage increase since the LGM, the Atlantic rain forest with 4.9×10 9 tC (+55%), the semideciduous forest of eastern Brazil with 6.3×10 9 tC (+46%), the Araucaria forest with 3.4×10 9 tC (+108%). The estimated carbon storage increase of the four forest biomes since the early Holocene is also remarkable. The extensive deforestation in the last century strongly affected the carbon storage by tropical forests.

  16. Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters

    PubMed Central

    Bansal, Anjali; Sankararamakrishnan, Ramasubbu

    2007-01-01

    Background The major intrinsic proteins (MIPs) facilitate the transport of water and neutral solutes across the lipid bilayers. Plant MIPs are believed to be important in cell division and expansion and in water transport properties in response to environmental conditions. More than 30 MIP sequences have been identified in Arabidopsis thaliana, maize and rice. Plasma membrane intrinsic proteins (PIPs), tonoplast intrinsic proteins (TIPs), Nod26-like intrinsic protein (NIPs) and small and basic intrinsic proteins (SIPs) are subfamilies of plant MIPs. Despite sequence diversity, all the experimentally determined structures belonging to the MIP superfamily have the same "hour-glass" fold. Results We have structurally characterized 39 rice and 31 maize MIPs and compared them with that of Arabidopsis. Homology models of 105 MIPs from all three plant species were built. Structure-based sequence alignments were generated and the residues in the helix-helix interfaces were analyzed. Small residues (Gly/Ala/Ser/Thr) are found to be highly conserved as a group in the helix-helix interface of MIP structures. Individual families sometimes prefer one or another of the residues from this group. The narrow aromatic/arginine (ar/R) selectivity filter in MIPs has been shown to provide an important constriction for solute permeability. Ar/R regions were analyzed and compared between the three plant species. Seventeen TIP, NIP and SIP members from rice and maize have ar/R signatures that are not found in Arabidopsis. A subgroup of rice and maize NIPs has small residues in three of the four positions in the ar/R tetrad, resulting in a wider constriction. These MIP members could transport larger solute molecules. Conclusion Small residues are group-conserved in the helix-helix interface of MIP structures and they seem to be important for close helix-helix interactions. Such conservation might help to preserve the hour-glass fold in MIP structures. Analysis and comparison of ar

  17. Organic Rice Production: Challenges and Opportunities

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The market demand for organically produced rice has grown steadily with the majority of the acreage now being located in Texas and California. A wide range of organic products are marketed including conventional long and medium grain rice, aromatic or scented rice, rice with colored bran, and rice f...

  18. Transcriptome Profiling and Physiological Studies Reveal a Major Role for Aromatic Amino Acids in Mercury Stress Tolerance in Rice Seedlings

    PubMed Central

    Trinh, Ngoc Nam; Huang, Li-Yao; Chen, Ying-Chih; Cheng, Kai-Teng; Huang, Tsai-Lien; Lin, Chung-Yi; Huang, Hao-Jen

    2014-01-01

    Mercury (Hg) is a serious environmental pollution threat to the planet. The accumulation of Hg in plants disrupts many cellular-level functions and inhibits growth and development, but the mechanism is not fully understood. To gain more insight into the cellular response to Hg, we performed a large-scale analysis of the rice transcriptome during Hg stress. Genes induced with short-term exposure represented functional categories of cell-wall formation, chemical detoxification, secondary metabolism, signal transduction and abiotic stress response. Moreover, Hg stress upregulated several genes involved in aromatic amino acids (Phe and Trp) and increased the level of free Phe and Trp content. Exogenous application of Phe and Trp to rice roots enhanced tolerance to Hg and effectively reduced Hg-induced production of reactive oxygen species. Hg induced calcium accumulation and activated mitogen-activated protein kinase. Further characterization of the Hg-responsive genes we identified may be helpful for better understanding the mechanisms of Hg in plants. PMID:24840062

  19. Transcriptome profiling and physiological studies reveal a major role for aromatic amino acids in mercury stress tolerance in rice seedlings.

    PubMed

    Chen, Yun-An; Chi, Wen-Chang; Trinh, Ngoc Nam; Huang, Li-Yao; Chen, Ying-Chih; Cheng, Kai-Teng; Huang, Tsai-Lien; Lin, Chung-Yi; Huang, Hao-Jen

    2014-01-01

    Mercury (Hg) is a serious environmental pollution threat to the planet. The accumulation of Hg in plants disrupts many cellular-level functions and inhibits growth and development, but the mechanism is not fully understood. To gain more insight into the cellular response to Hg, we performed a large-scale analysis of the rice transcriptome during Hg stress. Genes induced with short-term exposure represented functional categories of cell-wall formation, chemical detoxification, secondary metabolism, signal transduction and abiotic stress response. Moreover, Hg stress upregulated several genes involved in aromatic amino acids (Phe and Trp) and increased the level of free Phe and Trp content. Exogenous application of Phe and Trp to rice roots enhanced tolerance to Hg and effectively reduced Hg-induced production of reactive oxygen species. Hg induced calcium accumulation and activated mitogen-activated protein kinase. Further characterization of the Hg-responsive genes we identified may be helpful for better understanding the mechanisms of Hg in plants. PMID:24840062

  20. qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds

    PubMed Central

    2011-01-01

    Background Drought is one of the most important abiotic stresses causing drastic reductions in yield in rainfed rice environments. The suitability of grain yield (GY) under drought as a selection criterion has been reported in the past few years. Most of the quantitative trait loci (QTLs) for GY under drought in rice reported so far has been in the background of low-yielding susceptible varieties. Such QTLs have not shown a similar effect in multiple high- yielding drought-susceptible varieties, thus limiting their use in marker-assisted selection. Genetic control of GY under reproductive-stage drought stress (RS) in elite genetic backgrounds was studied in three F3:4 mapping populations derived from crosses of N22, a drought-tolerant aus cultivar, with Swarna, IR64, and MTU1010, three high-yielding popular mega-varieties, with the aim to identify QTLs for GY under RS that show a consistent effect in multiple elite genetic backgrounds. Three populations were phenotyped under RS in the dry seasons (DS) of 2009 and 2010 at IRRI. For genotyping, whole-genome scans for N22/MTU1010 and bulked segregant analysis for N22/Swarna and N22/IR64 were employed using SSR markers. Results A major QTL for GY under RS, qDTY1.1, was identified on rice chromosome 1 flanked by RM11943 and RM431 in all three populations. In combined analysis over two years, qDTY1.1 showed an additive effect of 29.3%, 24.3%, and 16.1% of mean yield in N22/Swarna, N22/IR64, and N22/MTU1010, respectively, under RS. qDTY1.1 also showed a positive effect on GY in non-stress (NS) situations in N22/Swarna, N22/IR64 over both years, and N22/MTU1010 in DS2009. Conclusions This is the first reported QTL in rice with a major and consistent effect in multiple elite genetic backgrounds under both RS and NS situations. Consistency of the QTL effect across different genetic backgrounds makes it a suitable candidate for use in marker-assisted breeding. PMID:22008150

  1. Evolutionary responses by native species to major anthropogenic changes to their ecosystems: Pacific salmon in the Columbia River hydropower system.

    PubMed

    Waples, Robin S; Zabel, Richard W; Scheuerell, Mark D; Sanderson, Beth L

    2008-01-01

    The human footprint is now large in all the Earth's ecosystems, and construction of large dams in major river basins is among the anthropogenic changes that have had the most profound ecological consequences, particularly for migratory fishes. In the Columbia River basin of the western USA, considerable effort has been directed toward evaluating demographic effects of dams, yet little attention has been paid to evolutionary responses of migratory salmon to altered selective regimes. Here we make a first attempt to address this information gap. Transformation of the free-flowing Columbia River into a series of slack-water reservoirs has relaxed selection for adults capable of migrating long distances upstream against strong flows; conditions now favour fish capable of migrating through lakes and finding and navigating fish ladders. Juveniles must now be capable of surviving passage through multiple dams or collection and transportation around the dams. River flow patterns deliver some groups of juvenile salmon to the estuary later than is optimal for ocean survival, but countervailing selective pressures might constrain an evolutionary response toward earlier migration timing. Dams have increased the cost of migration, which reduces energy available for sexual selection and favours a nonmigratory life history. Reservoirs are a benign environment for many non-native species that are competitors with or predators on salmon, and evolutionary responses are likely (but undocumented). More research is needed to tease apart the relative importance of evolutionary vs. plastic responses of salmon to these environmental changes; this research is logistically challenging for species with life histories like Pacific salmon, but results should substantially improve our understanding of key processes. If the Columbia River is ever returned to a quasinatural, free-flowing state, remaining populations might face a Darwinian debt (and temporarily reduced fitness) as they struggle to

  2. Survey of arsenic and its speciation in rice products such as breakfast cereals, rice crackers and Japanese rice condiments.

    PubMed

    Sun, Guo-Xin; Williams, Paul N; Zhu, Yong-Guan; Deacon, Claire; Carey, Anne-Marie; Raab, Andrea; Feldmann, Joerg; Meharg, Andrew A

    2009-04-01

    Rice has been demonstrated to be one of the major contributors to arsenic (As) in human diets in addition to drinking water, but little is known about rice products as an additional source of As exposure. Rice products were analyzed for total As and a subset of samples were measured for arsenic speciation using high performance liquid chromatography interfaced with inductively coupled plasma-mass spectrometry (HPLC-ICP-MS). A wide range of rice products had total and inorganic arsenic levels that typified those found in rice grain including, crisped rice, puffed rice, rice crackers, rice noodles and a range of Japanese rice condiments as well as rice products targeted at the macrobiotic, vegan, lactose intolerant and gluten intolerance food market. Most As in rice products are inorganic As (75.2-90.1%). This study provides a wider appreciation of how inorganic arsenic derived from rice products enters the human diet. PMID:18775567

  3. Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice

    PubMed Central

    Dubouzet, Joseph G; Maeda, Satoru; Sugano, Shoji; Ohtake, Miki; Hayashi, Nagao; Ichikawa, Takanari; Kondou, Youichi; Kuroda, Hirofumi; Horii, Yoko; Matsui, Minami; Oda, Kenji; Hirochika, Hirohiko; Takatsuji, Hiroshi; Mori, Masaki

    2011-01-01

    Approximately 20 000 of the rice-FOX Arabidopsis transgenic lines, which overexpress 13 000 rice full-length cDNAs at random in Arabidopsis, were screened for bacterial disease resistance by dip inoculation with Pseudomonas syringae pv. tomato DC3000 (Pst DC3000). The identities of the overexpressed genes were determined in 72 lines that showed consistent resistance after three independent screens. Pst DC3000 resistance was verified for 19 genes by characterizing other independent Arabidopsis lines for the same genes in the original rice-FOX hunting population or obtained by reintroducing the genes into ecotype Columbia by floral dip transformation. Thirteen lines of these 72 selections were also resistant to the fungal pathogen Colletotrichum higginsianum. Eight genes that conferred resistance to Pst DC3000 in Arabidopsis have been introduced into rice for overexpression, and transformants were evaluated for resistance to the rice bacterial pathogen, Xanthomonas oryzae pv. oryzae. One of the transgenic rice lines was highly resistant to Xanthomonas oryzae pv. oryzae. Interestingly, this line also showed remarkably high resistance to Magnaporthe grisea, the fungal pathogen causing rice blast, which is the most devastating rice disease in many countries. The causal rice gene, encoding a putative receptor-like cytoplasmic kinase, was therefore designated as BROAD-SPECTRUM RESISTANCE 1. Our results demonstrate the utility of the rice-FOX Arabidopsis lines as a tool for the identification of genes involved in plant defence and suggest the presence of a defence mechanism common between monocots and dicots. PMID:20955180

  4. Outcrossing Potential between U.S. Blackhull Red Rice and Indica Rice Cultivars

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weedy red rice is a major weed pest of rice in the southern U.S. Outcrossing between red rice and commercial tropical japonica rice cultivars has resulted in new weed biotypes that further hinder the effectiveness of weed management. In recent years, indica rice has been used increasingly as a ger...

  5. Changes of Major Antioxidant Compounds and Radical Scavenging Activity of Palm Oil and Rice Bran Oil during Deep-Frying

    PubMed Central

    Abdul Hamid, Azizah; Pak Dek, Mohd Sabri; Tan, Chin Ping; Mohd Zainudin, Mohd Asraf; Wee Fang, Evelyn Koh

    2014-01-01

    Changes in antioxidant properties and degradation of bioactives in palm oil (PO) and rice bran oil (RBO) during deep-frying were investigated. The alpha (α)-tocopherol, gamma (γ)-tocotrienol and γ-oryzanol contents of the deep-fried oils were monitored using high performance liquid chromatography, and antioxidant activity was determined using 2-diphenyl-1-picryl hydrazyl (DPPH) radical scavenging activity. Results revealed that the antioxidant activity of PO decreased significantly (p < 0.05), while that of RBO was preserved after deep-frying of fries. As expected, the concentration of α-tocopherol in PO and γ-tocotrienol in both PO and RBO decreased significantly (p < 0.05) with increased frying. Results also showed that γ-tocotrienol was found to be more susceptible to degradation compared to that of α-tocopherol in both PO and RBO. Interestingly, no significant degradation of α-tocopherol was observed in RBO. It is suggested that the presence of γ-oryzanol and γ-tocotrienol in RBO may have a protective effect on α-tocopherol during deep-frying. PMID:26785067

  6. Profiling of phytohormones and their major metabolites in rice using binary solid-phase extraction and liquid chromatography-triple quadrupole mass spectrometry.

    PubMed

    Cao, Zhao-Yun; Sun, Li-Hua; Mou, Ren-Xiang; Zhang, Lin-Ping; Lin, Xiao-Yan; Zhu, Zhi-Wei; Chen, Ming-Xue

    2016-06-17

    A high-throughput method was developed using liquid chromatography-triple quadrupole mass spectrometry (LC-MS/MS) for the profiling and quantification of 43 phytohormones and their major metabolites, including auxins, abscisic acid, jasmonic acid, salicylic acid, cytokinins and gibberellins in a single sample extract. Considerable matrix effects (MEs) were observed (with most ME values in the range of 29%-84%, but maximum MEs of more than 115%, even up to 206%, existed) in sample extracts for most of the compounds studied. The application of the proposed binary solid-phase extraction using polymer anion and polymer cation exchange resins, was performed to purify 25 acidic and 18 alkaline phytohormones and their major metabolites prior to the LC-MS/MS analysis, which markedly reduced the MEs to acceptable levels, with ME values in the range of ±15%. Moreover, all of the isomers of cytokinins and their metabolites were fully separated on a sub-2μm particle C18 reverse-phase column with the optimized mobile phase consisting of methanol and 5mM ammonium formate. The method showed good linearity for all 43 analytes with regression coefficients (R(2))>0.991. Limits of detection ranged from 0.19 to 7.57 fmol for auxin, gibberellins, abscisic acid and their metabolites, 29.7 fmol for jasmonic acid, 18.1 fmol for salicylic acid, and from 0.03 to 0.31 fmol for cytokinins and their metabolites. The mean recoveries for all of the analytes were from 70.7 to 118.5%, and the inter-day precisions (n=6) were less than 18.7%, with intra-day precisions (n=6) within 25.4%. Finally, 20 compounds were successfully quantified in rice sample profiles using the proposed method, which will greatly facilitate the understanding of hormone-related regulatory networks that influence rice growth and development. To our knowledge, there are limited reports that measure this level of phytohormone species in rice samples using a single analysis. PMID:27208989

  7. Simultaneous quantification of glyphosate, glufosinate, and their major metabolites in rice and soybean sprouts by gas chromatography with pulsed flame photometric detector.

    PubMed

    Tseng, Su-Hsiang; Lo, Yi-Wen; Chang, Pi-Chiou; Chou, Shin-Shou; Chang, Hung-Min

    2004-06-30

    Procedures were developed for the simultaneous determination of glyphosate [N-(phosphonomethyl)glycine] and glufosinate [dl-homoalanin-4-yl-(methyl)phosphinic acid] and their major metabolites, aminomethylphosphonic acid (AMPA) and 3-(methylphosphinico)propionic acid (3-MPPA), in rice and soybean sprouts by gas chromatography (GC) equipped with a pulsed flame photometric detector (PFPD). Herbicides and their major metabolites were previously derivatized with TMOA (trimethyl orthoacetate (TMOA) in the presence of acetic acid, and their GC responses versus heating temperature (70-90 degrees C) and heating time (30-120 min) were optimized. It was found that increases in heating temperature and heating time were unfavorable for the derivatization of glyphosate or glufosinate, whereas high temperature and extended reaction time remarkably facilitated that of AMPA and 3-MPPA except at 90 degrees C for an extended reaction time (120 min). Combination of AG1-X8 anion-exchange chromatography with a Florisil cartridge cleanup process was favorable for the GC-PFPD analysis. Four types of derivatives spiked in rice and soybean sprout matrices were eluted, reaching a baseline separation, in a sequence of 3-MPPA, AMPA, glyphosate, and glufosinate within 14 min using a DB-608 capillary column. Recoveries of glyphosate, AMPA, glufosinate, and 3-MPPA (0.5 ppm) spiked in both sample matrices were determined to be 72-81, 71-86, 101-119, and 83-90%, respectively, whereas the coefficient of variation was determined to be <10% in three repeated determinations. The instrumental limits of detection for glyphosate, AMPA, glufosinate, and 3-MPPA in sample matrices were 0.02, 0.03, 0.02, and 0.01 ppm, respectively. The limits of quantification for glyphosate, AMPA, glufosinate, and 3-MPPA in sample matrices were 0.06, 0.10, 0.06, and 0.04 ppm, respectively. PMID:15212448

  8. Effects of tillage during the nonwaterlogged period on nitrous oxide and nitric oxide emissions in typical Chinese rice-wheat rotation ecosystems

    NASA Astrophysics Data System (ADS)

    Yao, Zhisheng; Zhou, Zaixing; Zheng, Xunhua; Xie, Baohua; Liu, Chunyan; Butterbach-Bahl, Klaus; Zhu, Jianguo

    2010-03-01

    Tillage practices result in major changes to soil environmental conditions and to the distribution of crop residues and nutrients in the soil profile, which may consequently affect the biogenic production and emission of N trace gases. To investigate the effects of tillage during the nonwaterlogged period on nitric oxide (NO) and nitrous oxide (N2O) emissions in rice-wheat rotation systems, we performed field experiments at three sites (Suzhou, Wuxi, and Jiangdu) in the Yangtze River Delta using static chamber techniques. The results showed that the effect of tillage on the emissions of both gases differed among the three field sites due to differences in agricultural management and soil texture. At the site with a light soil texture (Jiangdu: sandy loam), no tillage resulted in reduced NO emissions (0.5 kg N ha-1) as compared to conventionally tilled fields (0.9 kg N ha-1; p < 0.05). Regarding N2O, the no tillage plots showed significantly higher emissions (p < 0.05) in comparison to the tilled plots (3.9 versus 2.2 kg N ha-1) when the fields were merely amended with synthetic N fertilizers. However, this effect was not significant when wheat straw was used in addition to synthetic N fertilizers during the preceding rice season. In the clay loam soils (Wuxi), no tillage resulted in lower NO and higher N2O emissions from either N fertilized or unfertilized fields even though these results were not statistically significant. In the silty clay loam soils (Suzhou), which showed the highest soil organic carbon contents and the highest rates of N trace gas emissions in all three of the investigated sites, reduced tillage resulted in much higher NO emissions, whereas N2O emissions were not obviously influenced by tillage practices (reduced tillage versus tillage: NO, 9.5 versus 5.4 kg N ha-1; N2O, 10.6 versus 9.0 kg N ha-1). Similar effects of tillage were observed for the direct emission factors of the applied N during the wheat season. The observed emission factors for

  9. Rice (Oryza) hemoglobins

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hemoglobins (Hbs) corresponding to non-symbiotic (nsHb) and truncated (tHb) Hbs have been identified in rice (Oryza). This review discusses the major findings from the current studies on rice Hbs. At the molecular level, a family of the nshb genes, consisting of hb1, hb2, hb3, hb4 and hb5, and a sin...

  10. Identification and comparative expression profiles of chemoreception genes revealed from major chemoreception organs of the rice leaf folder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    To better understand the olfactory mechanism in the rice leaf folder, Cnaphalocrocis medinalis (Guenée), one of the most serious insect pests of rice in Asia, we have established six partial transcriptomes from antennae, tarsus, and reproductive organs of male and female adults. A total of 102 genes...

  11. Regression analysis of major environmental parameters support an enhanced bioremediation of conglomerate heavy metals using an integrated ecosystem

    SciTech Connect

    Ibeanusi, V.M.; Henneman, T.; Cash, D.

    1995-12-31

    We have developed an integrated ecosystem that supports the on-site speciation, detoxification, and mobilization of conglomerate toxic heavy metals of As(III), CR(VI), Pb, and Se from contaminated soil and water. The observed ecosystem dynamics of laboratory simulated ponds generated a pH profile (3-8.5) and a redox condition (0.25 V) that supported the oxidation of H{sub 3}AsO{sub 3} to H{sub 2}AsO{sub 4}. The infrared analysis of spent media identified an arsonic acid. The Cr(VI), Pb{sup 2} and Se (as in selenite) were reduced to Cr(III), PbS, and Se{sub 0}. In addition, molecular studies have identified unique protein molecules (< 10 KD) that are associated in the bioremediation processes. In these studies, the presence of a resistant bacterium (MRS-1), and cyanobacteria were highly significant in the bioremediation and sequestering of the metal ions to the pond surface. These results may have implications in the treatment of mixed wastes often encountered in mining areas.

  12. Microbial mechanisms to reduce the uncertainties in the CH4 emissions from global rice fields

    NASA Astrophysics Data System (ADS)

    Kamaljit, K.; Tian, H.; Ren, W.; Yang, J.

    2013-12-01

    In terrestrial ecosystems, methane (CH4) uptake or emission represents the net balance between activities of different microbial organisms including anaerobic Methanogens that produce CH4 and Methanotrophs which oxidize CH4 in the aerobic environments. In this way, anaerobic soil environments such as rice fields are major source of terrestrial CH4 emissions. However, large uncertainties in the CH4 emission estimates have been reported from rice fields. The bottom-up and top-down methods showed a wide range of CH4 emissions estimations ranging from 25 to 300 Tg yr-1 from rice fields. The major reason for uncertainties in the CH4 emissions includes the water management that alters the balance of Methanogens and Methanotrophs in the rice fields. Two kinds of water management practices are followed including continuous flooding (CF) which refers to the continuous submergence as well as alternate wetting and drying (AWD) in which the rice fields are drained for several days during the growing season. The AWD provides aeration stress on Methanogens resulting in lower CH4 emissions than CF water management followed in the rice fields. A single aeration during growing season may significantly reduce the CH4 emission from the rice fields. Currently, most of the models structures assume that Methanogens become active once the soil moisture content is raised to saturation. However, several laboratory scale studies have indicated that following aeration the Methanogens don't become fully functional immediately even if the soil moisture content is raised to saturation. In this study, we integrated the aeration stress mechanisms on the Methanogens in the Dynamic Land Ecosystem Model (DLEM). The improved version of DLEM was used to conduct uncertainty analysis on global CH4 emission estimation following CF and AWD water management in the rice fields. Results of this study have shown that inclusion of the aeration stress mechanism on Methanogens in the modeling framework has

  13. Insights into molecular mechanism of blast resistance in weedy rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weedy rice is a serious pest in direct-seeded rice fields in the U.S. and worldwide. Under suitable conditions, weedy rice can reduce crop yields up to 70%. However, weedy rice may carry novel disease resistance genes. Rice blast disease caused by the fungus Magnaporthe oryzae is a major disease wo...

  14. Genetic diversity for rice grain mineral concentrations observed among genetically and geographically giverse rice accessions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    With about half of the world’s people dependent on rice as their main food source, improving the nutritional value of rice could have major impact on human health. While rice in the USA is often artificially fortified, natural enhancement of the rice grain’s nutritional value, i.e. from genetic impr...

  15. Rice Distillers Dried Grain Is a Promising Ingredient as a Partial Replacement of Plant Origin Sources in the Diet for Juvenile Red Seabream (Pagrus major)

    PubMed Central

    Choi, Jin; Rahman, Md Mostafizur; Lee, Sang-Min

    2014-01-01

    This study was designed to test the effects of dietary distillers dried grain (DDG) level on the growth performance, feed utilization, body composition and antioxidant activity of juvenile red seabream (Pagrus major). Six isonitrogenous and isocaloric diets were formulated to contain 0%, 5%, 10%, 15%, 20%, and 25% DDG from rice (designated as DDG0, DDG5, DDG10, DDG15, DDG20, and DDG25), respectively. Juvenile red seabream averaging 10.1±0.05 g were randomly distributed into 400-L tanks in a flow through systems. Three replicate groups of fish were fed one of the experimental diets to visual satiation two times a day for 10 weeks. Survival, weight gain, feed efficiency, protein efficiency ratio and hepatosomatic index of fish were not affected by dietary DDG levels (p>0.05). Proximate and amino acid composition of whole body in juvenile red seabream were not affected by dietary DDG levels (p>0.05). Plasma content of total protein, glucose, cholesterol, glutamic-pyruvic transaminase, phospholipid and triglyceride were not affected by dietary DDG levels (p>0.05). 1, 1-Diphenyl-2-picryl-hydrazyl radical and alkyl radical scavenging activities in plasma and liver of fish were not affected by dietary DDG levels (p>0.05). The results of this experiment suggest that DDG has the potential to replace plant origin ingredients such as wheat flour and corn gluten meal and could be used up to 25% in diet without incurring negative effects on the growth performance of juvenile red seabream. PMID:25358367

  16. Modeled Sea Level Rise Impacts on Coastal Ecosystems at Six Major Estuaries on Florida’s Gulf Coast: Implications for Adaptation Planning

    PubMed Central

    Birch, Anne P.; Brenner, Jorge; Gordon, Doria R.

    2015-01-01

    The Sea Level Affecting Marshes Model (SLAMM) was applied at six major estuaries along Florida’s Gulf Coast (Pensacola Bay, St. Andrews/Choctawhatchee Bays, Apalachicola Bay, Southern Big Bend, Tampa Bay and Charlotte Harbor) to provide quantitative and spatial information on how coastal ecosystems may change with sea level rise (SLR) and to identify how this information can be used to inform adaption planning. High resolution LiDAR-derived elevation data was utilized under three SLR scenarios: 0.7 m, 1 m and 2 m through the year 2100 and uncertainty analyses were conducted on selected input parameters at three sites. Results indicate that the extent, spatial orientation and relative composition of coastal ecosystems at the study areas may substantially change with SLR. Under the 1 m SLR scenario, total predicted impacts for all study areas indicate that coastal forest (-69,308 ha; -18%), undeveloped dry land (-28,444 ha; -2%) and tidal flat (-25,556 ha; -47%) will likely face the greatest loss in cover by the year 2100. The largest potential gains in cover were predicted for saltmarsh (+32,922 ha; +88%), transitional saltmarsh (+23,645 ha; na) and mangrove forest (+12,583 ha; +40%). The Charlotte Harbor and Tampa Bay study areas were predicted to experience the greatest net loss in coastal wetlands The uncertainty analyses revealed low to moderate changes in results when some numerical SLAMM input parameters were varied highlighting the value of collecting long-term sedimentation, accretion and erosion data to improve SLAMM precision. The changes predicted by SLAMM will affect exposure of adjacent human communities to coastal hazards and ecosystem functions potentially resulting in impacts to property values, infrastructure investment and insurance rates. The results and process presented here can be used as a guide for communities vulnerable to SLR to identify and prioritize adaptation strategies that slow and/or accommodate the changes underway. PMID:26207914

  17. Effects of physical and biogeochemical processes on aquatic ecosystems at the groundwater-surface water interface: An evaluation of a sulfate-impacted wild rice stream in Minnesota (USA)

    NASA Astrophysics Data System (ADS)

    Ng, G. H. C.; Yourd, A. R.; Myrbo, A.; Johnson, N.

    2015-12-01

    Significant uncertainty and variability in physical and biogeochemical processes at the groundwater-surface water interface complicate how surface water chemistry affects aquatic ecosystems. Questions surrounding a unique 10 mg/L sulfate standard for wild rice (Zizania sp.) waters in Minnesota are driving research to clarify conditions controlling the geochemistry of shallow sediment porewater in stream- and lake-beds. This issue raises the need and opportunity to carry out in-depth, process-based analysis into how water fluxes and coupled C, S, and Fe redox cycles interact to impact aquatic plants. Our study builds on a recent state-wide field campaign that showed that accumulation of porewater sulfide from sulfate reduction impairs wild rice, an annual grass that grows in shallow lakes and streams in the Great Lakes region of North America. Negative porewater sulfide correlations with organic C and Fe quantities also indicated that lower redox rates and greater mineral precipitation attenuate sulfide. Here, we focus on a stream in northern Minnesota that receives high sulfate loading from iron mining activity yet maintains wild rice stands. In addition to organic C and Fe effects, we evaluate the degree to which streambed hydrology, and in particular groundwater contributions, accounts for the active biogeochemistry. We collect field measurements, spanning the surrounding groundwater system to the stream, to constrain a reactive-transport model. Observations from seepage meters, temperature probes, and monitoring wells delineate upward flow that may lessen surface water impacts below the stream. Geochemical analyses of groundwater, porewater, and surface water samples and of sediment extractions reveal distinctions among the different domains and stream banks, which appear to jointly control conditions in the streambed. A model based on field conditions can be used to evaluate the relative the importance and the spatiotemporal scales of diverse flux and

  18. 13Carbon isotope discrimination in roots and shoots of major weed species of southern U.S. rice fields and its potential use for analysis of rice-weed root interactions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Assessing below ground plant interference in rice has been difficult in the past because thorough, accurate separation of the intertwined roots of weed and crop is extremely challenging. A d13C depletion method has been developed to assess interactions between roots of barnyardgrass and weed-suppre...

  19. Evolutionary insights into the origins of weediness in U.S. red rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weedy red rice is a widespread, economically challenging problem in Southern U.S. rice fields. The two major U.S. red rice types, strawhull and blackhull, are thought to have arisen independently from Asian rice populations in the distant past. Red rice is a weedy relative of rice, a genomic model...

  20. Soil organic carbon (SOC) accumulation in rice paddies under long-term agro-ecosystem experiments in southern China - VI. Changes in microbial community structure and respiratory activity

    NASA Astrophysics Data System (ADS)

    Liu, D.; Liu, X.; Liu, Y.; Li, L.; Pan, G.; Crowley, D.; Tippkötter, R.

    2011-02-01

    Biological stabilization within accumulated soil organic carbon (SOC) has not been well understood, while its role in physical and chemical protection as well as of chemical recalcitrance had been addressed in Chinese rice paddies. In this study, topsoil samples were collected and respiratory activity measured in situ following rice harvest under different fertilization treatments of three long-term experimental sites across southern China in 2009. The SOC contents, microbial biomass carbon (SMBC) and nitrogen (SMBN) were analysed using chemical digestion and microbial community structure assessment via clony dilute plate counting methods. While SOC contents were consistently higher under compound chemical fertilization (Comp-Fert) or combined organic and inorganic fertilization (Comb-Fert) compared to N fertilization only (N-Fert), there was significantly higher fungal-bacterial ratio under Comb-Fert than under N-Fert and Comp-Fert. When subtracting the background effect under no fertilization treatment (Non-Fert), the increase both in SMBC and SMBN under fertilization treatment was found very significantly correlated to the increase in SOC over controls across the sites. Also, the ratio of culturable fungal to bacterial population numbers (F/B ratio) was well correlated with soil organic carbon contents in all samples across the sites studied. SOC accumulation favoured a build-up the microbial community with increasing fungal dominance in the rice paddies under fertilization treatments. While soil respiration rates were high under Comb-Fert as a result of enhanced microbial community build-up, the specific soil respiratory activity based on microbial biomass carbon was found in a significantly negatively correlation with the SOC contents for overall samples. Thus, a fungal-dominated microbial community seemed to slow SOC turnover, thereby favouring SOC accumulation under Comp-Fert or under Comb-Fert in the rice paddies. Therefore, the biological stabilization

  1. EFFECTS OF CO2 ON COMPETITION BETWEEN RICE AND BARNYARDGRASS

    EPA Science Inventory

    The atmospheric CO2 concentration is increasing. ffects of elevated CO2 on rice production could occur not only through direct impacts to rice, but also indirectly via ecosystem responses. hanged competitiveness with elevated CO2 could occur between rice hich has the C3 type of p...

  2. The broad-leaf herbicide 2,4-dichlorophenoxyacetic acid turns rice into a living trap for a major insect pest and a parasitic wasp.

    PubMed

    Xin, Zhaojun; Yu, Zhaonan; Erb, Matthias; Turlings, Ted C J; Wang, Baohui; Qi, Jinfeng; Liu, Shengning; Lou, Yonggen

    2012-04-01

    Synthetic chemical elicitors of plant defense have been touted as a powerful means for sustainable crop protection. Yet, they have never been successfully applied to control insect pests in the field. We developed a high-throughput chemical genetics screening system based on a herbivore-induced linalool synthase promoter fused to a β-glucuronidase (GUS) reporter construct to test synthetic compounds for their potential to induce rice defenses. We identified 2,4-dichlorophenoxyacetic acid (2,4-D), an auxin homolog and widely used herbicide in monocotyledonous crops, as a potent elicitor of rice defenses. Low doses of 2,4-D induced a strong defensive reaction upstream of the jasmonic acid and ethylene pathways, resulting in a marked increase in trypsin proteinase inhibitor activity and volatile production. Induced plants were more resistant to the striped stem borer Chilo suppressalis, but became highly attractive to the brown planthopper Nilaparvata lugens and its main egg parasitoid Anagrus nilaparvatae. In a field experiment, 2,4-D application turned rice plants into living traps for N. lugens by attracting parasitoids. Our findings demonstrate the potential of auxin homologs as defensive signals and show the potential of the herbicide to turn rice into a selective catch crop for an economically important pest. PMID:22313362

  3. Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water

    PubMed Central

    Takahashi, Hirokazu; Greenway, Hank; Matsumura, Hideo; Tsutsumi, Nobuhiro; Nakazono, Mikio

    2014-01-01

    Background and Aims Rice (Oryza sativa) has the rare ability to germinate and elongate a coleoptile under oxygen-deficient conditions, which include both hypoxia and anoxia. It has previously been shown that ALCOHOL DEHYDROGENASE 1 (ADH1) is required for cell division and cell elongation in the coleoptile of submerged rice seedlings by means of studies using a rice ADH1-deficient mutant, reduced adh activity (rad). The aim of this study was to understand how low ADH1 in rice affects carbohydrate metabolism in the embryo and endosperm, and lactate and alanine synthesis in the embryo during germination and subsequent coleoptile growth in submerged seedlings. Methods Wild-type and rad mutant rice seeds were germinated and grown under complete submergence. At 1, 3, 5 and 7 d after imbibition, the embryo and endosperm were separated and several of their metabolites were measured and compared. Key results In the rad embryo, the rate of ethanol fermentation was halved, while lactate and alanine concentrations were 2·4- and 5·7- fold higher in the mutant than in the wild type. Glucose and fructose concentrations in the embryos increased with time in the wild type, but not in the rad mutant. The rad mutant endosperm had lower amounts of the α-amylases RAMY1A and RAMY3D, resulting in less starch degradation and lower glucose concentrations. Conclusions These results suggest that ADH1 is essential for sugar metabolism via glycolysis to ethanol fermentation in both the embryo and endosperm. In the endosperm, energy is presumably needed for synthesis of the amylases and for sucrose synthesis in the endosperm, as well as for sugar transport to the embryo. PMID:24431339

  4. [An evaluation of net carbon sink effect and cost/benefits of a rice-rape rotation ecosystem under long-term fertilization from Tai Lake region of China].

    PubMed

    Li, Jie-Jing; Pan, Gen-Xing; Zhang, Xu-Hui; Fei, Qing-Hua; Li, Zhi-Peng; Zhou, Ping; Zheng, Ju-Feng; Qiu, Duo-Sheng

    2009-07-01

    Taking a long-term fertilized rice-rape rotation system in Taihu Lake as test objective, its annual C balance and economic benefit were estimated, based on the measurement of past years grain yield, litter C content, and field CO2 emission as well as the investigation of material and management inputs. The calculated annual C sink under different fertilizations ranged from 0.9 t C x hm(-2) x a(-1) to 7.5 t C x hm(-2) x a(-1), and the net C sink effect under combined inorganic/organic fertilization was three folds as that under chemical fertilization. The C cost of material input ranged from 0.37 t C x hm(-2) x a(-1) to 1.13 t C x hm(-2) x a(-1), and that of management input ranged from 1.69 t C x hm(-2) x a(-1) to 1.83 t C x hm(-2) x a(-1). The annual economic benefit ranged from 5.8 x 10(3) CNY x hm(-2) x a(-1) to 16.5 x 10(3) CNY x hm(-2) x a(-1), and was 2.1 times higher under combined fertilization than under chemical fertilization. Comparing with that under chemical fertilization, the marginal cost for per ton C sink under combined inorganic/organic fertilization was estimated as 217.1 CNY x t(-1) C, very close to the C price of 20 Euro x t(-1) C in the EU. In sum, under combined inorganic/organic fertilization, this rice paddy ecosystem could not only have higher productivity, but also present greater net C sink effect and higher economic benefit, compared with under chemical fertilizer fertilization. PMID:19899468

  5. Identifying novel resistance genes in rice wild relatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice blast and sheath blight are major fungal diseases of cultivated rice (Oryza sativa L. ) that limit Arkansas rough rice yields and market potential. Resistance to these diseases has been found in rice wild relatives (Oryza spp.) A collection of these wild relatives originating from outside the U...

  6. Identification of Some Degradation Products of Golden Rice Beta- carotene

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Golden Rice (GR2) is genetically modified rice, which can contain as high as 37 ug of beta-carotene per g of dry rice. It was developed to combat vitamin A deficiency (VAD), a major malnutrition problem in many parts of the developing world, especially in South and South Eastern Asia, where rice is ...

  7. River discharges of water and nutrients to the Mediterranean and Black Sea: Major drivers for ecosystem changes during past and future decades?

    NASA Astrophysics Data System (ADS)

    Ludwig, Wolfgang; Dumont, Egon; Meybeck, Michel; Heussner, Serge

    2009-03-01

    than 5% in the Black Sea. Possible ecological impacts of the changing river inputs should therefore be visible only in productive coastal areas, such as the Gulf of Lions, where PPR can reach more than two thirds of PP. Reported ecosystem changes both in the Adriatic Sea and the Black Sea are concomitant with major changes in the reconstructed river inputs. Further work combining modelling and data collection is needed to test whether this may also have been the case for coastal ecosystems at other places in the Mediterranean and Black Sea.

  8. Identification and Comparative Expression Profiles of Chemoreception Genes Revealed from Major Chemoreception Organs of the Rice Leaf Folder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae)

    PubMed Central

    Zeng, Fang-Fang; Zhao, Zhen-Fei; Yan, Miao-Jun; Zhou, Wen; Zhang, Zan; Zhang, Aijun; Lu, Zhong-Xian; Wang, Man-Qun

    2015-01-01

    To better understand the olfactory mechanisms in the rice leaf folder, Cnaphalocrocis medinalis (Guenée), a serious pest of rice in Asia, we established six partial transcriptomes from antennae, protarsus, and reproductive organs of male and female adults. A total of 102 transcripts were identified, including 29 odorant receptors (ORs), 15 ionotropic receptors (IRs), 30 odorant-binding proteins (OBPs), 26 chemosensory proteins (CSPs), and 2 sensory neuron membrane proteins (SNMPs). The expression patterns of these genes were calculated by fragments per kilobase of exon per million fragments mapped (FPKM) and validated by real-time quantitative PCR (RT-qPCR). Some transcripts were exclusively expressed in specific organs, such as female protarsus, whereas others were universally expressed, this varied expression profile may provide insights into the specific functions mediated by chemoreception proteins in insects. To the best of our knowledge, among the 102 identified transcripts, 81 are novel and have never been reported before. In addition, it also is the first time that ORs and IRs are identified in C. medinalis. Our findings significantly enhance the currently limited understanding olfactory mechanisms of the olfactory mechanisms underlying the chemoreception system in C. medinalis. PMID:26657286

  9. Identification and Comparative Expression Profiles of Chemoreception Genes Revealed from Major Chemoreception Organs of the Rice Leaf Folder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae).

    PubMed

    Zeng, Fang-Fang; Zhao, Zhen-Fei; Yan, Miao-Jun; Zhou, Wen; Zhang, Zan; Zhang, Aijun; Lu, Zhong-Xian; Wang, Man-Qun

    2015-01-01

    To better understand the olfactory mechanisms in the rice leaf folder, Cnaphalocrocis medinalis (Guenée), a serious pest of rice in Asia, we established six partial transcriptomes from antennae, protarsus, and reproductive organs of male and female adults. A total of 102 transcripts were identified, including 29 odorant receptors (ORs), 15 ionotropic receptors (IRs), 30 odorant-binding proteins (OBPs), 26 chemosensory proteins (CSPs), and 2 sensory neuron membrane proteins (SNMPs). The expression patterns of these genes were calculated by fragments per kilobase of exon per million fragments mapped (FPKM) and validated by real-time quantitative PCR (RT-qPCR). Some transcripts were exclusively expressed in specific organs, such as female protarsus, whereas others were universally expressed, this varied expression profile may provide insights into the specific functions mediated by chemoreception proteins in insects. To the best of our knowledge, among the 102 identified transcripts, 81 are novel and have never been reported before. In addition, it also is the first time that ORs and IRs are identified in C. medinalis. Our findings significantly enhance the currently limited understanding olfactory mechanisms of the olfactory mechanisms underlying the chemoreception system in C. medinalis. PMID:26657286

  10. Relative competitive ability of rice with strawhull and blackhull red rice biotypes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weed interference depends largely upon the species composition of the weed community and an ability to compete with the cultured crop. Weedy red rice is a major weed pest of rice in the southern U.S. The focus of this study was to evaluate the competitive ability of rice against common, genetically ...

  11. Preferential Association of Endophytic Bradyrhizobia with Different Rice Cultivars and Its Implications for Rice Endophyte Evolution

    PubMed Central

    Piromyou, Pongdet; Greetatorn, Teerana; Teamtisong, Kamonluck; Okubo, Takashi; Shinoda, Ryo; Nuntakij, Achara; Tittabutr, Panlada; Boonkerd, Nantakorn

    2015-01-01

    Plant colonization by bradyrhizobia is found not only in leguminous plants but also in nonleguminous species such as rice. To understand the evolution of the endophytic symbiosis of bradyrhizobia, the effect of the ecosystems of rice plantations on their associations was investigated. Samples were collected from various rice (Oryza sativa) tissues and crop rotational systems. The rice endophytic bradyrhizobia were isolated on the basis of oligotrophic properties, selective medium, and nodulation on siratro (Macroptilium atropurpureum). Six bradyrhizobial strains were obtained exclusively from rice grown in a crop rotational system. The isolates were separated into photosynthetic bradyrhizobia (PB) and nonphotosynthetic bradyrhizobia (non-PB). Thai bradyrhizobial strains promoted rice growth of Thai rice cultivars better than the Japanese bradyrhizobial strains. This implies that the rice cultivars possess characteristics that govern rice-bacterium associations. To examine whether leguminous plants in a rice plantation system support the persistence of rice endophytic bradyrhizobia, isolates were tested for legume nodulation. All PB strains formed symbioses with Aeschynomene indica and Aeschynomene evenia. On the other hand, non-PB strains were able to nodulate Aeschynomene americana, Vigna radiata, and M. atropurpureum but unable to nodulate either A. indica or A. evenia. Interestingly, the nodABC genes of all of these bradyrhizobial strains seem to exhibit low levels of similarity to those of Bradyrhizobium diazoefficiens USDA110 and Bradyrhizobium sp. strain ORS285. From these results, we discuss the evolution of the plant-bradyrhizobium association, including nonlegumes, in terms of photosynthetic lifestyle and nod-independent interactions. PMID:25710371

  12. Preferential association of endophytic bradyrhizobia with different rice cultivars and its implications for rice endophyte evolution.

    PubMed

    Piromyou, Pongdet; Greetatorn, Teerana; Teamtisong, Kamonluck; Okubo, Takashi; Shinoda, Ryo; Nuntakij, Achara; Tittabutr, Panlada; Boonkerd, Nantakorn; Minamisawa, Kiwamu; Teaumroong, Neung

    2015-05-01

    Plant colonization by bradyrhizobia is found not only in leguminous plants but also in nonleguminous species such as rice. To understand the evolution of the endophytic symbiosis of bradyrhizobia, the effect of the ecosystems of rice plantations on their associations was investigated. Samples were collected from various rice (Oryza sativa) tissues and crop rotational systems. The rice endophytic bradyrhizobia were isolated on the basis of oligotrophic properties, selective medium, and nodulation on siratro (Macroptilium atropurpureum). Six bradyrhizobial strains were obtained exclusively from rice grown in a crop rotational system. The isolates were separated into photosynthetic bradyrhizobia (PB) and nonphotosynthetic bradyrhizobia (non-PB). Thai bradyrhizobial strains promoted rice growth of Thai rice cultivars better than the Japanese bradyrhizobial strains. This implies that the rice cultivars possess characteristics that govern rice-bacterium associations. To examine whether leguminous plants in a rice plantation system support the persistence of rice endophytic bradyrhizobia, isolates were tested for legume nodulation. All PB strains formed symbioses with Aeschynomene indica and Aeschynomene evenia. On the other hand, non-PB strains were able to nodulate Aeschynomene americana, Vigna radiata, and M. atropurpureum but unable to nodulate either A. indica or A. evenia. Interestingly, the nodABC genes of all of these bradyrhizobial strains seem to exhibit low levels of similarity to those of Bradyrhizobium diazoefficiens USDA110 and Bradyrhizobium sp. strain ORS285. From these results, we discuss the evolution of the plant-bradyrhizobium association, including nonlegumes, in terms of photosynthetic lifestyle and nod-independent interactions. PMID:25710371

  13. Impact of six transgenic Bacillus thuringiensis rice lines on four nontarget thrips species attacking rice panicles in the paddy field.

    PubMed

    Akhtar, Z R; Tian, J C; Chen, Y; Fang, Q; Hu, C; Peng, Y F; Ye, G Y

    2013-02-01

    As a key component of ecological risk assessments, nontarget effects of Bacillus thuringiensis (Bt) rice have been tested under laboratory and field conditions for various organisms. A 2-yr field experiment was conducted to observe the nontarget effects of six transgenic rice lines (expressing the Cry1Ab or fused protein of Cry1Ab and Cry1Ac) on four nontarget thrips species including Frankliniella intonsa (Trybom), F. tenuicornis (Uzel), Haplothrips aculeatus (F.), and H. tritici (Kurd), as compared with their rice parental control lines. Two sampling methods including the beat plate and plastic bag method were used to monitor the population densities of the four thrips species for 2 yr. The results showed that the seasonal average densities of four tested thrips species in Bt rice plots were significantly lower than or very similar to those in the non-Bt rice plots depending on rice genotypes, sampling methods, and years. Among all six tested Bt rice lines, transgenic B1 and KMD2 lines suppressed the population of these tested thrips species the most. Our results indicate that the tested Bt rice lines are unlikely to result in high population pressure of thrips species in comparison with non-Bt rice. In some cases, Bt rice lines could significantly suppress thrips populations in the rice ecosystem. In addition, compatibility of Bt rice, with rice host plant resistance to nontarget sucking pests is also discussed within an overall integrated pest management program for rice. PMID:23339799

  14. THE BENTHIC COMMUNITIES COMPARISON BETWEEN ORGANIC AND CONVENTIONAL RICE FIELDS.

    PubMed

    Kasamesiri, P; Thaimuangphol, W

    2015-01-01

    Rice fields are temporary wetlands prone to contamination from agricultural chemicals which affect their ecotoxicology and benthic community composition. The diversity of benthic fauna in both organic and conventional rice fields in Kalasin Province, Thailand was investigated. Benthos samples were collected by grab sampling from 20 stations in organic and conventional rice fields during one successive crop in August 2014. The number of benthic organisms found at each sampling station ranged from 16-518 and 24-137 individuals for organic and conventional rice fields, respectively. The benthic fauna in organic rice fields were dominated by crustaceans 41%, insects 31%, annelids 26%, and gastropods 2%. The conventional rice fields benthic fauna was composed of insects 51%, annelids 41%, and gastropods 8%. The abundance and composition of the benthic fauna demonstrated that organic rice farming practices are beneficial to sustaining the biodiversity in rice field ecosystems. PMID:27141733

  15. Principles of ecosystem sustainability

    SciTech Connect

    Chapin, F.S. III; Torn, M.S.; Tateno, Masaki

    1996-12-01

    Many natural ecosystems are self-sustaining, maintaining an characteristic mosaic of vegetation types of hundreds to thousands of years. In this article we present a new framework for defining the conditions that sustain natural ecosystems and apply these principles to sustainability of managed ecosystems. A sustainable ecosystem is one that, over the normal cycle of disturbance events, maintains its characteristics diversity of major functional groups, productivity, and rates of biogeochemical cycling. These traits are determined by a set of four {open_quotes}interactive controls{close_quotes} (climate, soil resource supply, major functional groups of organisms, and disturbance regime) that both govern and respond to ecosystem processes. Ecosystems cannot be sustained unless the interactive controls oscillate within stable bounds. This occurs when negative feedbacks constrain changes in these controls. For example, negative feedbacks associated with food availability and predation often constrain changes in the population size of a species. Linkages among ecosystems in a landscape can contribute to sustainability by creating or extending the feedback network beyond a single patch. The sustainability of managed systems can be increased by maintaining interactive controls so that they form negative feedbacks within ecosystems and by using laws and regulations to create negative feedbacks between ecosystems and human activities, such as between ocean ecosystems and marine fisheries. Degraded ecosystems can be restored through practices that enhance positive feedbacks to bring the ecosystem to a state where the interactive controls are commensurate with desired ecosystem characteristics. The possible combinations of interactive controls that govern ecosystem traits are limited by the environment, constraining the extent to which ecosystems can be managed sustainably for human purposes. 111 refs., 3 figs., 2 tabs.

  16. From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network.

    PubMed

    Singh, Renu; Singh, Yashi; Xalaxo, Suchit; Verulkar, S; Yadav, Neera; Singh, Shweta; Singh, Nisha; Prasad, K S N; Kondayya, K; Rao, P V Ramana; Rani, M Girija; Anuradha, T; Suraynarayana, Y; Sharma, P C; Krishnamurthy, S L; Sharma, S K; Dwivedi, J L; Singh, A K; Singh, P K; Nilanjay; Singh, N K; Kumar, Rajesh; Chetia, S K; Ahmad, T; Rai, M; Perraju, P; Pande, Anita; Singh, D N; Mandal, N P; Reddy, J N; Singh, O N; Katara, J L; Marandi, B; Swain, P; Sarkar, R K; Singh, D P; Mohapatra, T; Padmawathi, G; Ram, T; Kathiresan, R M; Paramsivam, K; Nadarajan, S; Thirumeni, S; Nagarajan, M; Singh, A K; Vikram, Prashant; Kumar, Arvind; Septiningshih, E; Singh, U S; Ismail, A M; Mackill, D; Singh, Nagendra K

    2016-01-01

    Rice is a staple cereal of India cultivated in about 43.5Mha area but with relatively low average productivity. Abiotic factors like drought, flood and salinity affect rice production adversely in more than 50% of this area. Breeding rice varieties with inbuilt tolerance to these stresses offers an economically viable and sustainable option to improve rice productivity. Availability of high quality reference genome sequence of rice, knowledge of exact position of genes/QTLs governing tolerance to abiotic stresses and availability of DNA markers linked to these traits has opened up opportunities for breeders to transfer the favorable alleles into widely grown rice varieties through marker-assisted backcross breeding (MABB). A large multi-institutional project, "From QTL to variety: marker-assisted breeding of abiotic stress tolerant rice varieties with major QTLs for drought, submergence and salt tolerance" was initiated in 2010 with funding support from Department of Biotechnology, Government of India, in collaboration with International Rice Research Institute, Philippines. The main focus of this project is to improve rice productivity in the fragile ecosystems of eastern, northeastern and southern part of the country, which bear the brunt of one or the other abiotic stresses frequently. Seven consistent QTLs for grain yield under drought, namely, qDTY1.1, qDTY2.1, qDTY2.2, qDTY3.1, qDTY3.2, qDTY9.1 and qDTY12.1 are being transferred into submergence tolerant versions of three high yielding mega rice varieties, Swarna-Sub1, Samba Mahsuri-Sub1 and IR 64-Sub1. To address the problem of complete submergence due to flash floods in the major river basins, the Sub1 gene is being transferred into ten highly popular locally adapted rice varieties namely, ADT 39, ADT 46, Bahadur, HUR 105, MTU 1075, Pooja, Pratikshya, Rajendra Mahsuri, Ranjit, and Sarjoo 52. Further, to address the problem of soil salinity, Saltol, a major QTL for salt tolerance is being transferred into

  17. Leaching behavior of nitrogen in a long-term experiment on rice under different N management systems.

    PubMed

    Luo, Liang-Guo; Itoh, Sumio; Zhang, Qing-Wen; Yang, Shi-Qi; Zhang, Qing-Zhong; Yang, Zheng-Li

    2011-06-01

    The leaching behavior of nitrogen was studied in single rice paddy production ecosystems in Tsukuba, Japan after 75 years of consistent fertilization regimes (no fertilizer, ammonium sulfate, a combination of composted rice straw with soybean cake, and fresh clover). During the 75-year period, management was unchanged with respect to rice planting density, irrigation, and net N fertilization for each field to which an N-source was added. Percolation water was collected, from May 2001 to April 2002, using porous suction cups installed in the fields at depths of 15, 40, and 60 cm. All water samples were taken to the laboratory for the measurement of both NH(4) ( + )-N and NO(3) ( - )-N concentrations using a continuous-flow nitrogen analyzer. The result indicated that there were significant differences in N leaching losses between treatments during the rice growing season. Total N leaching was significantly lower with the application of composted rice straw plus soybean cake (0.58 kg N ha( - 1)) than with ammonium sulfate (2.41 kg N ha( - 1)), which resulted in N leaching at a similar level to that with the fresh clover treatment (no significant difference). The majority of this N leaching was not due to NO(3) ( - )-N loss, but to that of NH(4) ( + )-N. The mean N leaching for all fertilizer treatments during the entire rice growing season was 1.58 kg N ha( - 1). Composted rice straw plus soybean cake produced leaching losses which were 65-75% lower than those with the application of fresh clover and ammonium sulfate. N accumulation resulting from nitrification in the fallow season could be a key source of nitrate-N leaching when fields become re-flooded before rice transplanting in the following year; particular attention should be paid to this phenomenon. PMID:20676930

  18. Test of Some Hybrid Combinations to Rice Blast

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice blast disease caused by Magnaporthe oryzae is one of the most devastating rice diseases worldwide. Blast resistant cultivars are recognized as the most efficacious and economical way to control this disease. Genetic resistance to rice blast is generally governed by a few major genes, often in c...

  19. Thermomechanical property of rice kernels studied by DMA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The thermomechanical property of the rice kernels was investigated using a dynamic mechanical analyzer (DMA). The length change of rice kernel with a loaded constant force along the major axis direction was detected during temperature scanning. The thermomechanical transition occurred in rice kernel...

  20. [Amino acid composition of rice grain proteins].

    PubMed

    Peruanskiĭ, Iu V; Savich, I M

    1976-01-01

    The composition of the major reserve proteins of rice grain--globulins, prolamines and glutelins--was examined in four rice varieties (Dubovsky 129, Kuban 3, Alakul, Ushtobinsky). Globulins proved to be most heterogeneous whereas glutelins appeared to be least heterogeneous. In regards to the ratio of components globulins showed high variability and glutelins displayed high stability. PMID:1005365

  1. Blackbirds and the southern rice crop

    USGS Publications Warehouse

    Meanley, Brooke

    1971-01-01

    In the 1700's and 1800's, rice was grown in the lowlands of South Carolina, Georgia, and North Carolina - on the major migratory route of the bobolink (Dolichonyx oryzivorus), the historic "ricebird" of that area because of its consumption of ripening rice. By the late 1800's the rice-growing industry had largely shifted to the coastal prairies of Louisiana and Texas, which are bordered by some 5 million acres of marshland-breeding habitat for the redwinged blackbird (Agelaius phoeniceus) and the boat-tailed grackle (Cassidix mexicanus). By 1900, rice was being grown on the Grand Prairie of eastern Arkansas, which bestrides the largest blackbird flyway in the country. In recent decades, rice culture has spread to other sections of Arkansas and thence to contiguous areas in Louisiana, Mississippi, Tennesee, and Missouri. In effect, then, man has taken the rice to the blackbirds.

  2. Preserving rice quality: fine mapping and introgressing a fissure resistance locus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice (Oryza sativa L.) kernel fissuring is a major concern of both rice producers and millers. Fissures are small cracks in the rice kernels that increase the percentage of breakage among the kernels when they are transported and milled, which decreases the value of processed rice. This study employ...

  3. Comparative Analyses Between Lolium/Festuca Introgression Lines and Rice Reveal the Major Fraction of Functionally Annotated Gene Models Is Located in Recombination-Poor/Very Recombination-Poor Regions of the Genome

    PubMed Central

    King, Julie; Armstead, Ian P.; Donnison, S. Iain; Roberts, Luned A.; Harper, John A.; Skøt, Kirsten; Elborough, Kieran; King, Ian P.

    2007-01-01

    Publication of the rice genome sequence has allowed an in-depth analysis of genome organization in a model monocot plant species. This has provided a powerful tool for genome analysis in large-genome unsequenced agriculturally important monocot species such as wheat, barley, rye, Lolium, etc. Previous data have indicated that the majority of genes in large-genome monocots are located toward the ends of chromosomes in gene-rich regions that undergo high frequencies of recombination. Here we demonstrate that a substantial component of the coding sequences in monocots is localized proximally in regions of very low and even negligible recombination frequencies. The implications of our findings are that during domestication of monocot plant species selection has concentrated on genes located in the terminal regions of chromosomes within areas of high recombination frequency. Thus a large proportion of the genetic variation available for selection of superior plant genotypes has not been exploited. In addition our findings raise the possibility of the evolutionary development of large supergene complexes that confer a selective advantage to the individual. PMID:17603095

  4. Avian foods, foraging and habitat conservation in world rice fields

    USGS Publications Warehouse

    Stafford, J.D.; Kaminski, R.M.; Reinecke, K.J.

    2010-01-01

    Worldwide, rice (Oryza sativa) agriculture typically involves seasonal flooding and soil tillage, which provides a variety of microhabitats and potential food for birds. Water management in rice fields creates conditions ranging from saturated mud flats to shallow (<30 cm) water, thereby attracting different guilds of birds. Grain not collected during harvest (i.e. waste rice) is typically the most abundant potential food of birds in rice fields, with estimates of seed mass from North America ranging from 66672 kg/ha. Although initially abundant after harvest, waste rice availability can be temporally limited. Few abundance estimates for other foods, such as vertebrate prey or forage vegetation, exist for rice fields. Outside North America, Europe and Japan, little is known about abundance and importance of any avian food in rice fields. Currently, flooding rice fields after harvest is the best known management practice to attract and benefit birds. Studies from North America indicate specific agricultural practices (e.g. burning stubble) may increase use and improve access to food resources. Evaluating and implementing management practices that are ecologically sustainable, increase food for birds and are agronomically beneficial should be global priorities to integrate rice production and avian conservation. Finally, land area devoted to rice agriculture appears to be stable in the USA, declining in China, and largely unquantified in many regions. Monitoring trends in riceland area may provide information to guide avian conservation planning in rice-agriculture ecosystems.

  5. [Vaginal ecosystem].

    PubMed

    Kovachev, S

    2011-01-01

    Vaginal flora plays an important role in preventing genital and urinary tract infections in women. In fact every little movement of obligate and/or facultative vaginal micro flora over the normal limits for this ecosystem causes vaginal disbacteriosis. Vaginal disbacteriosis is a risk condition which can cause infection. Thus an accurate understanding of the composition and ecology of the ecosystem is important to understanding the etiology of urogenital diseases. The aim of this review is to update knowledge about vaginal micro biota, the Lactobacillus species that dominate normal vaginal flora and the way they suppressed infectivity and/or proliferation of pathogenic bacteria. A Medline (Pub med) and medical literature search from 1990-2010 for relevant articles was performed and the most informative articles were selected. Lactic acid bacteria determinate the most of defense mechanisms of women vagina by concurrent adhesion, producing lactic acid, antimicrobial products, hydrogen peroxide and by local interactions with the innate and cell-mediated immune systems and plasminogen-plasmin system. All this mechanisms promotes the stability of the normal vaginal micro flora. Every Lactobacillus species play a different role in host--defense vaginal system. The presence of different Lactobacillus species with the normal vaginal micro flora is a major determinant to the stability of this micro flora and for urogenital health. PMID:21916315

  6. Managed island ecosystems

    USGS Publications Warehouse

    McEachern, Kathryn; Atwater, Tanya; Collins, Paul W.; Faulkner, Kate R.; Richards, Daniel V.

    2016-01-01

    This long-anticipated reference and sourcebook for California’s remarkable ecological abundance provides an integrated assessment of each major ecosystem type—its distribution, structure, function, and management. A comprehensive synthesis of our knowledge about this biologically diverse state, Ecosystems of California covers the state from oceans to mountaintops using multiple lenses: past and present, flora and fauna, aquatic and terrestrial, natural and managed. Each chapter evaluates natural processes for a specific ecosystem, describes drivers of change, and discusses how that ecosystem may be altered in the future. This book also explores the drivers of California’s ecological patterns and the history of the state’s various ecosystems, outlining how the challenges of climate change and invasive species and opportunities for regulation and stewardship could potentially affect the state’s ecosystems. The text explicitly incorporates both human impacts and conservation and restoration efforts and shows how ecosystems support human well-being. Edited by two esteemed ecosystem ecologists and with overviews by leading experts on each ecosystem, this definitive work will be indispensable for natural resource management and conservation professionals as well as for undergraduate or graduate students of California’s environment and curious naturalists.

  7. Ecosystem Jenga!

    ERIC Educational Resources Information Center

    Umphlett, Natalie; Brosius, Tierney; Laungani, Ramesh; Rousseau, Joe; Leslie-Pelecky, Diandra L.

    2009-01-01

    To give students a tangible model of an ecosystem and have them experience what could happen if a component of that ecosystem were removed; the authors developed a hands-on, inquiry-based activity that visually demonstrates the concept of a delicately balanced ecosystem through a modification of the popular game Jenga. This activity can be…

  8. Ecosystem Journalism

    ERIC Educational Resources Information Center

    Robertson, Amy; Mahlin, Kathryn

    2005-01-01

    If the organisms in a prairie ecosystem created a newspaper, what would it look like? What important news topics of the ecosystem would the organisms want to discuss? Imaginative and enthusiastic third-grade students were busy pondering these questions as they tried their hands at "ecosystem journalism." The class had recently completed a study of…

  9. Abandoned Rice Fields Make Streams Go Dry in Upland Landscapes

    NASA Astrophysics Data System (ADS)

    Jayawickreme, D.

    2015-12-01

    In South Asia, new economic realities are driving many rural rice farmers out of agriculture. With increasing neglect, abandonment, and rising conversions of centuries old rice fields into other uses, ecological and environmental consequences of these transitions are becoming progressively clear. Field observations in Sri Lanka's central highlands suggest that small shifts in rice to non-rice land uses in headwater watersheds can have a domino effect on the productivity and viability of rice fields and other ecological systems downstream by inflicting groundwater recharge reductions, lowering groundwater yields, and causing other hydrological changes. Preliminary analysis shows that although rice itself is a very water intensive crop, the presence of rain-fed upland rice-fields is hugely beneficial to the watersheds they reside. In particular, water benefits of rice appear to be derived from ponded conditions (3-5 inches of standing water) in which rice is grown, and the contribution rice fields makes to enhance water retention and storage capacity of their watersheds during the monsoon season that coincide with the cropping season. In the absence of well managed rice-fields, hilly upland landscapes produce more runoff and retain little rainwater during the wet season. Furthermore, after centuries of intensive use, much of South Asia's rice fields are nutrient poor and minimally productive without fertilizer applications and other interventions. Consequently, when abandoned, soil erosion and other impacts that affect aquatic ecosystems and watershed health also emerge. Despite these multiple concerns however, little research is currently done to better understand the environmental significance of rice cultivations that are a dominant land-use in many South Asian landscapes. The aim of this presentation is to stir interest among the scientific community to engage more broadly in rice, water, and environmental change research in the face of new economic realities in

  10. Characterization of rice blast resistance gene Pi61(t) in rice germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Identification of resistance (R) genes to races of Magnaporthe oryzae in rice germplasm is essential for the development of rice cultivars with long lasting blast resistance. In the present study, one major quantitative trait locus, qPi93-3, was fine mapped using a recombinant inbred line (RIL), F8 ...

  11. The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology

    PubMed Central

    Wang, Dapeng; Xia, Yan; Li, Xinna; Hou, Lixia; Yu, Jun

    2013-01-01

    Over the past 10 years, genomes of cultivated rice cultivars and their wild counterparts have been sequenced although most efforts are focused on genome assembly and annotation of two major cultivated rice (Oryza sativa L.) subspecies, 93-11 (indica) and Nipponbare (japonica). To integrate information from genome assemblies and annotations for better analysis and application, we now introduce a comparative rice genome database, the Rice Genome Knowledgebase (RGKbase, http://rgkbase.big.ac.cn/RGKbase/). RGKbase is built to have three major components: (i) integrated data curation for rice genomics and molecular biology, which includes genome sequence assemblies, transcriptomic and epigenomic data, genetic variations, quantitative trait loci (QTLs) and the relevant literature; (ii) User-friendly viewers, such as Gbrowse, GeneBrowse and Circos, for genome annotations and evolutionary dynamics and (iii) Bioinformatic tools for compositional and synteny analyses, gene family classifications, gene ontology terms and pathways and gene co-expression networks. RGKbase current includes data from five rice cultivars and species: Nipponbare (japonica), 93-11 (indica), PA64s (indica), the African rice (Oryza glaberrima) and a wild rice species (Oryza brachyantha). We are also constantly introducing new datasets from variety of public efforts, such as two recent releases—sequence data from ∼1000 rice varieties, which are mapped into the reference genome, yielding ample high-quality single-nucleotide polymorphisms and insertions–deletions. PMID:23193278

  12. The roots of future rice harvests.

    PubMed

    Ahmadi, Nourollah; Audebert, Alain; Bennett, Malcolm J; Bishopp, Anthony; de Oliveira, Antonio Costa; Courtois, Brigitte; Diedhiou, Abdala; Diévart, Anne; Gantet, Pascal; Ghesquière, Alain; Guiderdoni, Emmanuel; Henry, Amelia; Inukai, Yoshiaki; Kochian, Leon; Laplaze, Laurent; Lucas, Mikael; Luu, Doan Trung; Manneh, Baboucarr; Mo, Xiaorong; Muthurajan, Raveendran; Périn, Christophe; Price, Adam; Robin, Sabariappan; Sentenac, Hervé; Sine, Bassirou; Uga, Yusaku; Véry, Anne Aliénor; Wissuwa, Matthias; Wu, Ping; Xu, Jian

    2014-12-01

    Rice production faces the challenge to be enhanced by 50% by year 2030 to meet the growth of the population in rice-eating countries. Whereas yield of cereal crops tend to reach plateaus and a yield is likely to be deeply affected by climate instability and resource scarcity in the coming decades, building rice cultivars harboring root systems that can maintain performance by capturing water and nutrient resources unevenly distributed is a major breeding target. Taking advantage of gathering a community of rice root biologists in a Global Rice Science Partnership workshop held in Montpellier, France, we present here the recent progresses accomplished in this area and focal points where an international network of laboratories should direct their efforts. PMID:26224558

  13. Budgeting of major nutrients and the mitigation options for nutrient mining in semi-arid tropical agro-ecosystem of Tamil Nadu, India using NUTMON model.

    PubMed

    Surendran, U; Rama Subramoniam, S; Raja, P; Kumar, V; Murugappan, V

    2016-04-01

    Mining of nutrients from soil is a major problem in developing countries causing soil degradation and threaten long-term food production. The present study attempts to apply NUTrient MONitoring (NUTMON) model for carrying out nutrient budgeting to assess the stocks and flows of nitrogen (N), phosphorus (P), and potassium (K) in defined geographical unit based on the inputs, viz., mineral fertilizers, manures, atmospheric deposition, and sedimentation, and outputs, viz., harvested crop produces, residues, leaching, denitrification, and erosion losses. The study area covers Coimbatore and Erode Districts, which are potential agricultural areas in western agro-ecological zone of Tamil Nadu, India. The calculated nutrient balances for both the districts at district scale, using NUTMON methodology, were negative for nitrogen (N -3.3 and -10.1 kg ha(-1)) and potassium (K -58.6 and -9.8 kg ha(-1)) and positive for phosphorus (P +14.5 and 20.5 kg ha(-1)). Soil nutrient pool has to adjust the negative balance of N and K; there will be an expected mining of nutrient from the soil reserve. A strategy was attempted for deriving the fertilizer recommendation using Decision Support System for Integrated Fertilizer Recommendation (DSSIFER) to offset the mining in selected farms. The results showed that when DSSIFER recommended fertilizers are applied to crops, the nutrient balance was positive. NUTMON-Toolbox with DSSIFER would serve the purpose on enhancing soil fertility, productivity, and sustainability. The management options to mitigate nutrient mining with an integrated system approach are also discussed. PMID:27021693

  14. Contact urticaria from rice.

    PubMed

    Yamakawa, Y; Ohsuna, H; Aihara, M; Tsubaki, K; Ikezawa, Z

    2001-02-01

    A 30-year-old man with atopic dermatitis had had erythema and itching of the hands after washing rice in water, though he had always eaten cooked rice without problems. Handling test with water used to wash regular rice was performed on abraded hands, and produced urticarial erythema after several minutes. Applications of water used to wash allergen-reduced rice were negative for urticarial reaction. Prick test with water used to wash regular rice was +++. However prick test reaction with water used to wash allergen-reduced rice was +. Histamine-release test of regular rice-washing water was grade 3 and that of allergen-reduced rice grade 1. In immunoblotting analysis with regular rice washing water, there were no bands with this patient. These results suggest that the allergen responsible for contact urticaria in this patient might be water-soluble, heat-unstable, and not contained in allergen-reduced rice. PMID:11205411

  15. Moulds and mycotoxins in rice from the Swedish retail market.

    PubMed

    Fredlund, E; Thim, A-M; Gidlund, A; Brostedt, S; Nyberg, M; Olsen, M

    2009-04-01

    A survey of moulds and mycotoxins was performed on 99 rice samples taken from the Swedish retail market. The main objective was to study the mould and mycotoxin content in basmati rice and rice with a high content of fibre. Samples of jasmine rice as well as long-grain rice were also included. The samples were analysed for their content of ochratoxin A (high-performance liquid chromatography (HPLC)), aflatoxin B(1), B(2), G(1), and G(2) (HPLC, RIDA(R)QUICK), and mould (traditional cultivation methods in combination with morphological analysis). The majority of samples were sampled according to European Commission Regulation 401/2006. Subsamples were pooled and mixed before milling and both mould and mycotoxin analyses were performed on milled rice. The results showed that the majority of basmati rice (71%) and many jasmine rice samples (20%) contained detectable levels of aflatoxin B(1) (level of quantification = 0.1 microg aflatoxin kg(-1) rice). Two samples of jasmine rice and ten basmati rice samples contained levels over the regulated European maximum limits of 2 microg kg(-1) for aflatoxin B(1) or 4 microg kg(-1) for total aflatoxins. Aspergillus was the most common mould genus isolated, but also Penicillium, Eurotium, Wallemia, Cladosporium, Epicoccum, Alternaria, and Trichotecium were found. The presence of Aspergillus flavus in 21% of the samples indicates that incorrect management of rice during production and storage implies a risk of mould growth and subsequent production of aflatoxin. Rough estimates showed that high rice consumers may have an intake of 2-3 ng aflatoxin kg(-1) bodyweight and day(-1) from rice alone. This survey shows that aflatoxin is a common contaminant in rice imported to Europe. PMID:19680928

  16. Antioxidants and antioxidant activity of several pigmented rice brans.

    PubMed

    Laokuldilok, Thunnop; Shoemaker, Charles F; Jongkaewwattana, Sakda; Tulyathan, Vanna

    2011-01-12

    This study investigated the antioxidant content and activity of phenolic acids, anthocyanins, α-tocopherol and γ-oryzanol in pigmented rice (black and red rice) brans. After methanolic extraction, the DPPH free radical scavenging activity and antioxidant activity were measured. The pigmented rice bran extract had a greater reducing power than a normal rice bran extract from a long grain white rice. All bran extracts were highly effective in inhibiting linoleic acid peroxidation (60-85%). High-performance liquid chromatography (HPLC) analysis of antioxidants in rice bran found that γ-oryzanol (39-63%) and phenolic acids (33-43%) were the major antioxidants in all bran samples, and black rice bran also contained anthocyanins 18-26%. HPLC analysis of anthocyanins showed that pigmented bran was rich in cyanidin-3-glucoside (58-95%). Ferulic acid was the dominant phenolic acid in the rice bran samples. Black rice bran contained gallic, hydroxybenzoic, and protocatechuic acids in higher contents than red rice bran and normal rice bran. Furthermore, the addition of 5% black rice bran to wheat flour used for making bread produced a marked increase in the free radical scavenging and antioxidant activity compared to a control bread. PMID:21141962

  17. The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice.

    PubMed

    Burgos, Nilda Roma; Singh, Vijay; Tseng, Te Ming; Black, Howard; Young, Nelson D; Huang, Zhongyun; Hyma, Katie E; Gealy, David R; Caicedo, Ana L

    2014-11-01

    The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management. PMID:25122473

  18. Evolutionary and social consequences of introgression of nontransgenic herbicide resistance from rice to weedy rice in Brazil.

    PubMed

    Merotto, Aldo; Goulart, Ives C G R; Nunes, Anderson L; Kalsing, Augusto; Markus, Catarine; Menezes, Valmir G; Wander, Alcido E

    2016-08-01

    Several studies have expressed concerns about the effects of gene flow from transgenic herbicide-resistant crops to their wild relatives, but no major problems have been observed. This review describes a case study in which what has been feared in transgenics regarding gene flow has actually changed biodiversity and people's lives. Nontransgenic imidazolinone-resistant rice (IMI-rice) cultivars increased the rice grain yield by 50% in southern Brazil. This increase was beneficial for life quality of the farmers and also improved the regional economy. However, weedy rice resistant to imidazolinone herbicides started to evolve three years after the first use of IMI-rice cultivars. Population genetic studies indicate that the herbicide-resistant weedy rice was mainly originated from gene flow from resistant cultivars and distributed by seed migration. The problems related with herbicide-resistant weedy rice increased the production costs of rice that forced farmers to sell or rent their land. Gene flow from cultivated rice to weedy rice has proven to be a large agricultural, economic, and social constraint in the use of herbicide-resistant technologies in rice. This problem must be taken into account for the development of new transgenic or nontransgenic rice technologies. PMID:27468302

  19. Identification of Sheath Blight Resistance QTLs in Rice Using Recombinant Inbred Line Population of Lemont X Jasmine 85

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice sheath blight (RSB) caused by the soil borne pathogen Rhizoctonia solani, is one of the most destructive diseases of rice around the globe, causing severe losses in rice yield and quality annually. Major gene(s) governing the resistance to RSB have not been found in cultivated rice worldwide...

  20. Investigations of methane emissions from rice cultivation in Indian context.

    PubMed

    Anand, Shalini; Dahiya, R P; Talyan, Vikash; Vrat, Prem

    2005-05-01

    The increasing demand of the growing population requires enhancement in the production of rice. This has a direct bearing on the global environment since the rice cultivation is one of the major contributors to the methane emissions. As the rice cultivation is intensified with the current practices and technologies, the methane fluxes from paddy fields will substantially rise. Improved high yielding rice varieties together with efficient cultivation techniques will certainly contribute to the curtailment of the methane emission fluxes. In this paper, the system dynamic approach is used for estimating the methane emissions from rice fields in India till the year 2020. Mitigation options studied for curtailing the methane emissions include rice production management, use of low methane emitting varieties of rice, water management and fertilizer amendment. The model is validated quantitatively and sensitivity tests are carried out to examine the robustness of the model. PMID:15788188

  1. AQUATIC ECOSYSTEMS,

    EPA Science Inventory

    Aquatic ecosystems are a vital part of the urban water cycle (and of urban areas more broadly), and, if healthy, provide a range of goods and services valued by humans (Meyer 1997). For example, aquatic ecosystems (e.g., rivers, lakes, wetlands) provide potable water, food resou...

  2. CHARACTERIZATION OF WEEDY RICE POPULATIONS IN THE SOUTHERN U.S. AND THEIR GENE FLOW INTERACTIONS WITH RICE USING DNA MARKERS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weedy (red) rice (Oryza sativa) is a major weed problem in rice (Oryza sativa) in the southern US. Outcrossing between these plant types can lead to gene flow that negatively impacts the rice industry. We have been using SSR molecular marker analysis in combination with phenotypic traits to systema...

  3. Bioengineered 'golden' indica rice cultivars with beta-carotene metabolism in the endosperm with hygromycin and mannose selection systems.

    PubMed

    Datta, Karabi; Baisakh, Niranjan; Oliva, Norman; Torrizo, Lina; Abrigo, Editha; Tan, Jing; Rai, Mayank; Rehana, Sayda; Al-Babili, Salim; Beyer, Peter; Potrykus, Ingo; Datta, Swapan K

    2003-03-01

    Vitamin-A deficiency (VAD) is a major malnutrition problem in South Asia, where indica rice is the staple food. Indica-type rice varieties feed more than 2 billion people. Hence, we introduced a combination of transgenes using the biolistic system of transformation enabling biosynthesis of provitamin A in the endosperm of several indica rice cultivars adapted to diverse ecosystems of different countries. The rice seed-specific glutelin promoter (Gt-1 P) was used to drive the expression of phytoene synthase (psy), while lycopene beta-cyclase (lcy) and phytoene desaturase (crtI), fused to the transit peptide sequence of the pea-Rubisco small subunit, were driven by the constitutive cauliflower mosaic virus promoter (CaMV35S P). Transgenic plants were recovered through selection with either CaMV35S P driven hph (hygromycin phosphotransferase) gene or cestrum yellow leaf curling virus promoter (CMP) driven pmi (phophomannose isomerase) gene. Molecular and biochemical analyses demonstrated stable integration and expression of the transgenes. The yellow colour of the polished rice grain evidenced the carotenoid accumulation in the endosperm. The colour intensity correlated with the estimated carotenoid content by spectrophotometric and HPLC analysis. Carotenoid level in cooked polished seeds was comparable (with minor loss of xanthophylls) to that in non-cooked seeds of the same transgenic line. The variable segregation pattern in T1 selfing generation indicated single to multiple loci insertion of the transgenes in the genome. This is the first report of using nonantibiotic pmi driven by a novel promoter in generating transgenic indica rice for possible future use in human nutrition. PMID:17147745

  4. EFFECTS OF UV-B AND GLOBAL CLIMATE CHANGE ON RICE RESEARCH PLAN

    EPA Science Inventory

    Little is currently known about the response of rice plants to UV-B radiation, enriched CO2, or elevated temperature. ven less is known about the responses of important rice ecosystem components (pests, pathogens, weeds, nitrogen fixation, methanogenesis) to these factors. o accu...

  5. Direct and reverse pollen-mediated gene flow between GM rice and red rice weed

    PubMed Central

    Serrat, X.; Esteban, R.; Peñas, G.; Català, M. M.; Melé, E.; Messeguer, J.

    2013-01-01

    Potential risks of genetically modified (GM) crops must be identified before their commercialization, as happens with all new technologies. One of the major concerns is the proper risk assessment of adventitious presence of transgenic material in rice fields due to cross-pollination. Several studies have been conducted in order to quantify pollen-mediated gene flow from transgenic rice (Oryza sativa) to both conventional rice and red rice weed (O. sativa f. spontanea) under field conditions. Some of these studies reported GM pollen-donor rice transferring GM traits to red rice. However, gene flow also occurs in the opposite direction, in a phenomenon that we have called reverse gene flow, resulting in transgenic seeds that have incorporated the traits of wild red rice. We quantified reverse gene flow using material from two field trials. A molecular analysis based on amplified fragment length polymorphisms was carried out, being complemented with a phenotypic identification of red rice traits. In both field trials, the reverse gene flow detected was greater than the direct gene flow. The rate of direct gene flow varied according to the relative proportions of the donor (GM rice) and receptor (red rice) plants and was influenced by wind direction. The ecological impact of reverse gene flow is limited in comparison with that of direct gene flow because non-shattered and non-dormant seeds would be obtained in the first generation. Hybrid seed would remain in the spike and therefore most of it would be removed during harvesting. Nevertheless, this phenomenon must be considered in fields used for elite seed production and in developing countries where farmers often keep some seed for planting the following year. In these cases, there is a higher risk of GM red rice weed infestation increasing from year to year and therefore a proper monitoring plan needs to be established.

  6. Shelf-sea ecosystems

    SciTech Connect

    Walsh, J J

    1980-01-01

    An analysis of the food chain dynamics of the Oregon, Alaskan, and New York shelves is made with respect to differences in physical forcing of these ecosystems. The world's shelves are 10% of the area of the ocean, yield 99% of the world's fish catch, and may be a major sink in the global CO/sub 2/ budget.

  7. Phenolic compounds and bioactivities of pigmented rice.

    PubMed

    Deng, Gui-Fang; Xu, Xiang-Rong; Zhang, Yuan; Li, Dan; Gan, Ren-You; Li, Hua-Bin

    2013-01-01

    The pigmented rice has been consumed in China, Japan, and Korea for a long time. It has been used for strengthening kidney function, treating anemia, promoting blood circulation, removing blood stasis, treating diabetes, and ameliorating sight in traditional Chinese medicine. The extracts from pigmented rice are used as natural food colorants in bread, ice cream, and liquor as well as functional food. The pigmented rice is mainly black, red, and dark purple rice, and contains a variety of flavones, tannin, phenolics, sterols, tocols, γ-oryzanols, amino acids, and essential oils. Anthocyanins are thought as major functional components of pigmented rice. Several anthocyanins have been isolated and identified from the pigmented rice, including cyanidin 3-glucoside, cyanidin 3-galactoside, cyanidin 3-rutinoside, cyanidin 3,5-diglucoside, malvidin 3-galactoside, peonidin 3-glucoside, and pelargonidin 3,5-diglucoside. This review provides up-to-date coverage of pigmented rice in regard to bioactive constituents, extraction and analytical methods, and bioactivities. Special attention is paid to the bioactivities including antioxidant and free radical scavenging, antitumor, antiatherosclerosis, hypoglycemic, and antiallergic activities. PMID:23216001

  8. Rice Production and Marketing.

    ERIC Educational Resources Information Center

    Briers, Gary; Lee, Jasper S.

    This guide contains lesson plans for use in secondary programs of agricultural education in geographical areas in which rice is produced. Six units and 13 problem areas are organized into teaching plans that cover the broad nature of rice production. The six units are: (1) determining the importance and history of rice production; (2) determining…

  9. Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.)

    PubMed Central

    Miro, Berta; Ismail, Abdelbagi M.

    2013-01-01

    Rice is semi-aquatic, adapted to a wide range of hydrologies, from aerobic soils in uplands to anaerobic and flooded fields in waterlogged lowlands, to even deeply submerged soils in flood-prone areas. Considerable diversity is present in native rice landraces selected by farmers over centuries. Our understanding of the adaptive features of these landraces to native ecosystems has improved considerably over the recent past. In some cases, major genes associated with tolerance have been cloned, such as SUB1A that confers tolerance of complete submergence and SNORKEL genes that control plant elongation to escape deepwater. Modern rice varieties are sensitive to flooding during germination and early growth, a problem commonly encountered in rainfed areas, but few landraces capable of germination under these conditions have recently been identified, enabling research into tolerance mechanisms. Major QTLs were also identified, and are being targeted for molecular breeding and for cloning. Nevertheless, limited progress has been made in identifying regulatory processes for traits that are unique to tolerant genotypes, including faster germination and coleoptile elongation, formation of roots and leaves under hypoxia, ability to catabolize starch into simple sugars for subsequent use in glycolysis and fermentative pathways to generate energy. Here we discuss the state of knowledge on the role of the PDC-ALDH-ACS bypass and the ALDH enzyme as the likely candidates effective in tolerant rice genotypes. Potential involvement of factors such as cytoplasmic pH regulation, phytohormones, reactive oxygen species scavenging and other metabolites is also discussed. Further characterization of contrasting genotypes would help in elucidating the genetic and biochemical regulatory and signaling mechanisms associated with tolerance. This could facilitate breeding rice varieties suitable for direct seeding systems and guide efforts for improving waterlogging tolerance in other crops

  10. Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.).

    PubMed

    Miro, Berta; Ismail, Abdelbagi M

    2013-01-01

    Rice is semi-aquatic, adapted to a wide range of hydrologies, from aerobic soils in uplands to anaerobic and flooded fields in waterlogged lowlands, to even deeply submerged soils in flood-prone areas. Considerable diversity is present in native rice landraces selected by farmers over centuries. Our understanding of the adaptive features of these landraces to native ecosystems has improved considerably over the recent past. In some cases, major genes associated with tolerance have been cloned, such as SUB1A that confers tolerance of complete submergence and SNORKEL genes that control plant elongation to escape deepwater. Modern rice varieties are sensitive to flooding during germination and early growth, a problem commonly encountered in rainfed areas, but few landraces capable of germination under these conditions have recently been identified, enabling research into tolerance mechanisms. Major QTLs were also identified, and are being targeted for molecular breeding and for cloning. Nevertheless, limited progress has been made in identifying regulatory processes for traits that are unique to tolerant genotypes, including faster germination and coleoptile elongation, formation of roots and leaves under hypoxia, ability to catabolize starch into simple sugars for subsequent use in glycolysis and fermentative pathways to generate energy. Here we discuss the state of knowledge on the role of the PDC-ALDH-ACS bypass and the ALDH enzyme as the likely candidates effective in tolerant rice genotypes. Potential involvement of factors such as cytoplasmic pH regulation, phytohormones, reactive oxygen species scavenging and other metabolites is also discussed. Further characterization of contrasting genotypes would help in elucidating the genetic and biochemical regulatory and signaling mechanisms associated with tolerance. This could facilitate breeding rice varieties suitable for direct seeding systems and guide efforts for improving waterlogging tolerance in other crops

  11. Early screening of recombinant inbred lines for fissure resistance in non-semidwarf rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice (Oryza sativa L.) kernel fissuring poses a major problem for both rice farmers and millers. It results in the decreased value of milled rice because of the increase in the percentage of broken kernels associated with fissuring. This study employs the use of fine mapping to increase the genetic ...

  12. Economics of weed suppressive rice cultivars in flood- and furrow-irrigated systems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weeds are a major constraint to rice production. In the U.S, weeds in rice are controlled primarily with synthetic herbicides. Intensive herbicide application in rice also has many potential drawbacks, resulting in environmental pollution, human health concerns, and development of weed resistance. B...

  13. Speciation And Distribution Of Arsenic And Localization Of Nutrients In Rice Grains

    EPA Science Inventory

    Arsenic (As) contamination of rice grains and the generally low concentration of micronutrients in rice have been recognized as a major concern for human health. Here, we investigated the speciation and localization of As and the distribution of (micro)nutrients in rice grains b...

  14. Use of bacillus biocontrol agents for disease management in organic rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Organic rice production has significantly increased in the U. S. over the last decade. Organic rice growers lack effective tools to manage sheath blight, caused by Rhizoctonia solani, and narrow brown leaf spot, caused by Cercospora janseana, two major diseases affecting organic rice production. Thi...

  15. Finding high yield genes in weedy red rice to improve new cultivars

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Red rice (Oryza rufipogon) is a weedy, wild relative of cultivated rice (Oryza sativa) that is considered a major pest in rice production fields. However, researchers have found that it can be a valuable source of disease and insect resistance genes. Researchers with USDA ARS and Cornell University ...

  16. Genome duplication improves rice root resistance to salt stress

    PubMed Central

    2014-01-01

    Background Salinity is a stressful environmental factor that limits the productivity of crop plants, and roots form the major interface between plants and various abiotic stresses. Rice is a salt-sensitive crop and its polyploid shows advantages in terms of stress resistance. The objective of this study was to investigate the effects of genome duplication on rice root resistance to salt stress. Results Both diploid rice (HN2026-2x and Nipponbare-2x) and their corresponding tetraploid rice (HN2026-4x and Nipponbare-4x) were cultured in half-strength Murashige and Skoog medium with 150 mM NaCl for 3 and 5 days. Accumulations of proline, soluble sugar, malondialdehyde (MDA), Na+ content, H+ (proton) flux at root tips, and the microstructure and ultrastructure in rice roots were examined. We found that tetraploid rice showed less root growth inhibition, accumulated higher proline content and lower MDA content, and exhibited a higher frequency of normal epidermal cells than diploid rice. In addition, a protective gap appeared between the cortex and pericycle cells in tetraploid rice. Next, ultrastructural analysis showed that genome duplication improved membrane, organelle, and nuclei stability. Furthermore, Na+ in tetraploid rice roots significantly decreased while root tip H+ efflux in tetraploid rice significantly increased. Conclusions Our results suggest that genome duplication improves root resistance to salt stress, and that enhanced proton transport to the root surface may play a role in reducing Na+ entrance into the roots. PMID:25184027

  17. Variations in bran carotenoids levels within and between rice subgroups

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice (Oryza sativa L.) is a major grain in the human diet and carotenoids are valuable antioxidants. However, little is known about varietal differences in the carotenoid contents of the rice bran. The objective of this study is to determine the relative differences in bran carotenoid levels among...

  18. Enhancing the health-beneficial qualities of whole grain rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Various pre- and post-harvest approaches (i.e. pre-germination of whole grains and reduced milling degree) to enhancing the health beneficial compounds of whole grain and milled rice have been reported. A discussion of the results from our pre-harvest efforts is as follows. The majority of rice cons...

  19. Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments

    PubMed Central

    Ji, Haishi; Ding, Yuanjun; Liu, Xiaoyu; Li, Lianqing; Zhang, Dengxiao; Li, Zichuan; Sun, Jingling; Lashari, Muhammad Siddique; Joseph, Stephen; Meng, Yuanduo; Kuzyakov, Yakov; Pan, Genxing

    2015-01-01

    Suberin-derived substituted fatty acids have been shown to be potential biomarkers for plant-derived carbon (C) in soils across ecosystems. Analyzing root derived suberin compounds bound in soil could help to understand the root input into a soil organic carbon pool. In this study, bound lipids were extracted and identified in root and topsoil samples. Short-chain suberin diacids were quantified under rice (Oryza sativa L.) and rape (Brassica campestris) rotations with different cultivar combinations in a Chinese rice paddy. After removal of free lipids with sequential extraction, the residual bound lipids were obtained with saponification and derivatization before analysis using gas chromatography–mass spectrometry (GC-MS). Diacids C16 and C18 in bound lipids were detected both in rice and rape root samples, while diacids C20 and C22 were detected only in rape root samples. Accordingly, diacids were quantified in both rhizosphere and bulk soil (0–15 cm). The amount of total root-derived diacids in bulk soil varied in a range of 5.6–9.6 mg/kg across growth stages and crop seasons. After one year-round rice-rape rotation, root-derived suberin diacids were maintained at a level of 7–9 mg/kg in bulk soil; this was higher under a super rice cultivar LY than under a hybrid cultivar IIY. While concentrations of the analyzed diacids were generally higher in rhizosphere than in bulk soil, the total diacid (DA) concentration was higher at the time of rape harvest than at rice harvest, suggesting that rape roots made a major contribution to the preservation of diacids in the paddy. Moreover, the net change in the concentration and the ratios of C16:0 DA to C18:1 DA, and of C16:0 DA to C18:0 DA, over a whole growing season, were greater under LY than under IIY, though there was no difference between cultivars within a single growth stage. Overall, total concentration of root-derived suberin diacids was found to be positively correlated to soil organic carbon

  20. Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments.

    PubMed

    Ji, Haishi; Ding, Yuanjun; Liu, Xiaoyu; Li, Lianqing; Zhang, Dengxiao; Li, Zichuan; Sun, Jingling; Lashari, Muhammad Siddique; Joseph, Stephen; Meng, Yuanduo; Kuzyakov, Yakov; Pan, Genxing

    2015-01-01

    Suberin-derived substituted fatty acids have been shown to be potential biomarkers for plant-derived carbon (C) in soils across ecosystems. Analyzing root derived suberin compounds bound in soil could help to understand the root input into a soil organic carbon pool. In this study, bound lipids were extracted and identified in root and topsoil samples. Short-chain suberin diacids were quantified under rice (Oryza sativa L.) and rape (Brassica campestris) rotations with different cultivar combinations in a Chinese rice paddy. After removal of free lipids with sequential extraction, the residual bound lipids were obtained with saponification and derivatization before analysis using gas chromatography-mass spectrometry (GC-MS). Diacids C16 and C18 in bound lipids were detected both in rice and rape root samples, while diacids C20 and C22 were detected only in rape root samples. Accordingly, diacids were quantified in both rhizosphere and bulk soil (0-15 cm). The amount of total root-derived diacids in bulk soil varied in a range of 5.6-9.6 mg/kg across growth stages and crop seasons. After one year-round rice-rape rotation, root-derived suberin diacids were maintained at a level of 7-9 mg/kg in bulk soil; this was higher under a super rice cultivar LY than under a hybrid cultivar IIY. While concentrations of the analyzed diacids were generally higher in rhizosphere than in bulk soil, the total diacid (DA) concentration was higher at the time of rape harvest than at rice harvest, suggesting that rape roots made a major contribution to the preservation of diacids in the paddy. Moreover, the net change in the concentration and the ratios of C16:0 DA to C18:1 DA, and of C16:0 DA to C18:0 DA, over a whole growing season, were greater under LY than under IIY, though there was no difference between cultivars within a single growth stage. Overall, total concentration of root-derived suberin diacids was found to be positively correlated to soil organic carbon concentration

  1. Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A study was initiated to understand Burkholderia glumae, the major causal agent for bacterial panicle blight disease of rice; to develop practical diagnostic methods for monitoring the disease; and to evaluate rice germplasm for resistance. Burkholderia glumae was frequently isolated from infected p...

  2. Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A study was initiated to understand Burkholderia glumae (major causal agent for bacterial panicle blight disease of rice) to develop practical diagnostic methods for monitoring the disease; and to evaluate rice germplasm for resistance. B. glumae was frequently isolated from symptomatic panicles on...

  3. Identification of quantitative trait loci (QTLs) responsible for sheath blight resistance in rice using recombinant inbred line population of Lemont X Jasmine 85

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice sheath blight (RSB) caused by the soil borne pathogen Rhizoctonia solani, is one of the most destructive diseases of rice, causing severe losses in rice yield and quality annually. The major gene (s) governing the resistance to RSB have not been found in cultivated rice worldwide. However, ri...

  4. Extraction of light filth from rice flours, extruded rice products, and rice paper: collaborative study.

    PubMed

    Dent, R G

    1982-09-01

    Two new methods were developed for the extraction of rodent hairs and insect fragments from rice products: one for rice flour and one for extruded rice products and rice paper. A 100 g sample of rice flour was extracted with mineral oil-40% isopropanol, followed by a water phase as needed for additional cycles. For extruded rice products and rice paper, a 225 g sample of each was initially extracted as above, followed by a single extraction with mineral oil-20% isopropanol. Both methods used an acid hydrolysis pretreatment followed by wet sieving and a percolator extraction. Average rodent hair recoveries were 77.8% for rice flour and 82.2% for extruded rice products and rice paper. Average insect fragment recoveries were 89.6% for rice flour and 91.9% for extruded rice products and rice paper. Both methods were adopted official first action. PMID:7130079

  5. Cooked rice texture and rice flour pasting properties; impacted by rice temperature during milling.

    PubMed

    Saleh, Mohammed; Meullenet, Jean-Francois

    2015-03-01

    Rice milling plays a key factor in determining rice quality and value. Therefore accurate quality assessments are critical to the rice industry. This study was undertaken to assess the effect of exposing rice to elevated temperatures during milling, on cooked rice texture and rice flour pasting properties. Two long (Cybonnett and Francis) and one medium (Jupiter) rice (oryzae sativa L.) cultivars were milled using McGill laboratory mill for 30 and 40 s after warmed up the mill before milling. Four different milling temperatures per milling duration were achieved. Cooked rice texture properties were assessed using a uniaxial compression test and rice flour pasting properties measured using a TA-2000 rheometer. Results of this study showed that exposure of rice to high temperatures during milling significantly decreased cooked rice firmness. An increase in milled rice temperature after milling from 10.0 to 13.3 °C resulted in a 5.4 and 8.1 N decrease in cooked rice firmness. Although not always significant, the increase in milled rice temperature during milling resulted in an increase in cooked rice stickiness. The increase in milling temperature also showed significant increase in rice flour pasting properties. Changes in rice functional characteristics were attributed to the changes occurring to rice chemical constituents due to temperature exposure as indicated by the increase in rice protein hydrophobicity. Proteins are known to affect rice starch water holding capacity and other starch gelatinization properties. PMID:25745230

  6. Range Ecosystems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    After more than two hundred years, grazing remains California’s most extensive land use. The ‘Range Ecosystems’ chapter in the ‘Ecosystems of California’ sourcebook provides an integrated picture of the biophysical, social, and economic aspects of lands grazed by livestock in the state. Grazing mana...

  7. Ethnobotanical investigation of 'wild' food plants used by rice farmers in Kalasin, Northeast Thailand

    PubMed Central

    2011-01-01

    Background Wild food plants are a critical component in the subsistence system of rice farmers in Northeast Thailand. One of the important characteristics of wild plant foods among farming households is that the main collection locations are increasingly from anthropogenic ecosystems such as agricultural areas rather than pristine ecosystems. This paper provides selected results from a study of wild food conducted in several villages in Northeast Thailand. A complete botanical inventory of wild food plants from these communities and surrounding areas is provided including their diversity of growth forms, the different anthropogenic locations were these species grow and the multiplicity of uses they have. Methods Data was collected using focus groups and key informant interviews with women locally recognized as knowledgeable about contemporarily gathered plants. Plant species were identified by local taxonomists. Results A total of 87 wild food plants, belonging to 47 families were reported, mainly trees, herbs (terrestrial and aquatic) and climbers. Rice fields constitute the most important growth location where 70% of the plants are found, followed by secondary woody areas and home gardens. The majority of species (80%) can be found in multiple growth locations, which is partly explained by villagers moving selected species from one place to another and engaging in different degrees of management. Wild food plants have multiple edible parts varying from reproductive structures to vegetative organs. More than two thirds of species are reported as having diverse additional uses and more than half of them are also regarded as medicine. Conclusions This study shows the remarkable importance of anthropogenic areas in providing wild food plants. This is reflected in the great diversity of species found, contributing to the food and nutritional security of rice farmers in Northeast Thailand. PMID:22067578

  8. Integrated management strategies for Arsenic and Cadmium in rice paddy environments

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice is both a major staple food for human populations, and the major source of soil arsenic (As) and cadmium (Cd) transfer to the human food chain. Thus soil and crop accumulation of As and Cd have become major environmental issues globally. Arsenic and Cd contamination of soils and rice threatens ...

  9. The Impact of Herbicide-Resistant Rice Technology on Phenotypic Diversity and Population Structure of United States Weedy Rice1[W][OPEN

    PubMed Central

    Burgos, Nilda Roma; Singh, Vijay; Tseng, Te Ming; Black, Howard; Young, Nelson D.; Huang, Zhongyun; Hyma, Katie E.; Gealy, David R.; Caicedo, Ana L.

    2014-01-01

    The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management. PMID:25122473

  10. Mitigation of arsenic accumulation in rice with water management and silicon fertilization.

    PubMed

    Li, R Y; Stroud, J L; Ma, J F; McGrath, S P; Zhao, F J

    2009-05-15

    Rice represents a major route of As exposure in populations that depend on a rice diet. Practical measures are needed to mitigate the problem of excessive As accumulation in paddy rice. Two potential mitigation methods, management of the water regime and Si fertilization, were investigated under greenhouse conditions. Growing rice aerobically during the entire rice growth duration resulted in the leastAs accumulation. Maintaining aerobic conditions during either vegetative or reproductive stage of rice growth also decreased As accumulation in rice straw and grain significantly compared with rice grown under flooded conditions. The effect of water management regimes was consistent with the observed effect of flooding-induced arsenite mobilization in the soil solution. Aerobic treatments increased the percentage of inorganic As in grain, but the concentrations of inorganic As remained lower than in the flooded rice. Silicon fertilization decreased the total As concentration in straw and grain by 78 and 16%, respectively, even though Si addition increased As concentration in the soil solution. Silicon also significantly influenced As speciation in rice grain and husk by enhancing methylation. Silicon decreased the inorganic As concentration in grain by 59% while increasing the concentration of dimethylarsinic acid (DMA) by 33%. There were also significant differences between two rice genotypes in grain As speciation. This study demonstrated that water management Si fertilization, and selection of rice cultivars are effective measures that can be used to reduce As accumulation in rice. PMID:19544887

  11. Rice antioxidants: phenolic acids, flavonoids, anthocyanins, proanthocyanidins, tocopherols, tocotrienols, γ-oryzanol, and phytic acid

    PubMed Central

    Goufo, Piebiep; Trindade, Henrique

    2014-01-01

    Epidemiological studies suggested that the low incidence of certain chronic diseases in rice-consuming regions of the world might be associated with the antioxidant compound contents of rice. The molecules with antioxidant activity contained in rice include phenolic acids, flavonoids, anthocyanins, proanthocyanidins, tocopherols, tocotrienols, γ-oryzanol, and phytic acid. This review provides information on the contents of these compounds in rice using a food composition database built from compiling data from 316 papers. The database provides access to information that would have otherwise remained hidden in the literature. For example, among the four types of rice ranked by color, black rice varieties emerged as those exhibiting the highest antioxidant activities, followed by purple, red, and brown rice varieties. Furthermore, insoluble compounds appear to constitute the major fraction of phenolic acids and proanthocyanidins in rice, but not of flavonoids and anthocyanins. It is clear that to maximize the intake of antioxidant compounds, rice should be preferentially consumed in the form of bran or as whole grain. With respect to breeding, japonica rice varieties were found to be richer in antioxidant compounds compared with indica rice varieties. Overall, rice grain fractions appear to be rich sources of antioxidant compounds. However, on a whole grain basis and with the exception of γ-oryzanol and anthocyanins, the contents of antioxidants in other cereals appear to be higher than those in rice. PMID:24804068

  12. Energy from rice residues

    SciTech Connect

    Mahin, D.B.

    1990-03-01

    Developing countries produce millions of tons of rice husks and straw as a byproduct of harvesting rice. Although some of these rice residues are used for fuel or other purposes, most are burned for disposal or just dumped. However, since the mid- 1980's, industrial plants for rice residue utilization have been installed in several countries and are planned in a number of others. The report provides information on systems to produce energy from rice residues that are commercially available in the United States, Europe, and various developing countries, with an emphasis on those currently used or sold on an international level. Specifically reviewed are the use of rice husks to produce: (1) industrial process heat either directly from furnaces or by generating low pressure steam in boilers; (2) mechanical and electrical power for rice milling via steam engine systems, steam turbine/generator systems, and gasifier/engine systems; and (3) electric power for the grid. The outlook for producing energy from rice straw is also assessed. In addition, the prospects for the use of energy from husks or straw in the processing of rice bran are reviewed.

  13. QTL Analysis for Resistance to Blast Disease in U.S. Weedy Rice.

    PubMed

    Liu, Yan; Qi, Xinshuai; Gealy, Dave R; Olsen, Kenneth M; Caicedo, Ana L; Jia, Yulin

    2015-07-01

    Understanding the genetic architecture of adaptation is of great importance in evolutionary biology. U.S. weedy rice is well adapted to the local conditions in U.S. rice fields. Rice blast disease is one of the most destructive diseases of cultivated rice worldwide. However, information about resistance to blast in weedy rice is limited. Here, we evaluated the disease reactions of 60 U.S. weedy rice accessions with 14 blast races, and investigated the quantitative trait loci (QTL) associated with blast resistance in two major ecotypes of U.S. weedy rice. Our results revealed that U.S. weedy rice exhibited a broad resistance spectrum. Using genotyping by sequencing, we identified 28 resistance QTL in two U.S. weedy rice ecotypes. The resistance QTL with relatively large and small effects suggest that U.S. weedy rice groups have adapted to blast disease using two methods, both major resistance (R) genes and QTL. Three genomic loci shared by some of the resistance QTL indicated that these loci may contribute to no-race-specific resistance in weedy rice. Comparing with known blast disease R genes, we found that the R genes at these resistance QTL are novel, suggesting that U.S. weedy rice is a potential source of novel blast R genes for resistant breeding. PMID:25761210

  14. The native cyclobutane pyrimidine dimer photolyase of rice is phosphorylated.

    PubMed

    Teranishi, Mika; Nakamura, Kentaro; Morioka, Hiroshi; Yamamoto, Kazuo; Hidema, Jun

    2008-04-01

    The cyclobutane pyrimidine dimer (CPD) is a major type of DNA damage induced by ultraviolet B (UVB) radiation. CPD photolyase, which absorbs blue/UVA light as an energy source to monomerize dimers, is a crucial factor for determining the sensitivity of rice (Oryza sativa) to UVB radiation. Here, we purified native class II CPD photolyase from rice leaves. As the final purification step, CPD photolyase was bound to CPD-containing DNA conjugated to magnetic beads and then released by blue-light irradiation. The final purified fraction contained 54- and 56-kD proteins, whereas rice CPD photolyase expressed from Escherichia coli was a single 55-kD protein. Western-blot analysis using anti-rice CPD photolyase antiserum suggested that both the 54- and 56-kD proteins were the CPD photolyase. Treatment with protein phosphatase revealed that the 56-kD native rice CPD photolyase was phosphorylated, whereas the E. coli-expressed rice CPD photolyase was not. The purified native rice CPD photolyase also had significantly higher CPD photorepair activity than the E. coli-expressed CPD photolyase. According to the absorption, emission, and excitation spectra, the purified native rice CPD photolyase possesses both a pterin-like chromophore and an FAD chromophore. The binding activity of the native rice CPD photolyase to thymine dimers was higher than that of the E. coli-expressed CPD photolyase. These results suggest that the structure of the native rice CPD photolyase differs significantly from that of the E. coli-expressed rice CPD photolyase, and the structural modification of the native CPD photolyase leads to higher activity in rice. PMID:18235036

  15. Determinants for grading Malaysian rice

    NASA Astrophysics Data System (ADS)

    ChePa, Noraziah; Yusoff, Nooraini; Ahmad, Norhayati

    2016-08-01

    Due to un-uniformity of rice grading practices in Malaysia, zones which actively producing rice in Malaysia are using their own way of grading rice. Rice grading is important in determining rice quality and its subsequent price in the market. It is an important process applied in the rice production industry with the purpose of ensuring that the rice produced for the market meets the quality requirements of consumer. Two important aspects that need to be considered in determining rice grades are grading technique and determinants to be used for grading (usually referred as rice attributes). This article proposes the list of determinants to be used in grading Malaysian rice. Determinants were explored through combination of extensive literature review and series of interview with the domain experts and practitioners. The proposed determinants are believed to be beneficial to BERNAS in improving the current Malaysian rice grading process.

  16. Diversity of Global Rice Markets and the Science Required for Consumer-Targeted Rice Breeding

    PubMed Central

    Calingacion, Mariafe; Laborte, Alice; Nelson, Andrew; Resurreccion, Adoracion; Concepcion, Jeanaflor Crystal; Daygon, Venea Dara; Mumm, Roland; Reinke, Russell; Dipti, Sharifa; Bassinello, Priscila Zaczuk; Manful, John; Sophany, Sakhan; Lara, Karla Cordero; Bao, Jinsong; Xie, Lihong; Loaiza, Katerine; El-hissewy, Ahmad; Gayin, Joseph; Sharma, Neerja; Rajeswari, Sivakami; Manonmani, Swaminathan; Rani, N. Shobha; Kota, Suneetha; Indrasari, Siti Dewi; Habibi, Fatemeh; Hosseini, Maryam; Tavasoli, Fatemeh; Suzuki, Keitaro; Umemoto, Takayuki; Boualaphanh, Chanthkone; Lee, Huei Hong; Hung, Yiu Pang; Ramli, Asfaliza; Aung, Pa Pa; Ahmad, Rauf; Wattoo, Javed Iqbal; Bandonill, Evelyn; Romero, Marissa; Brites, Carla Moita; Hafeel, Roshni; Lur, Huu-Sheng; Cheaupun, Kunya; Jongdee, Supanee; Blanco, Pedro; Bryant, Rolfe; Thi Lang, Nguyen; Hall, Robert D.; Fitzgerald, Melissa

    2014-01-01

    With the ever-increasing global demand for high quality rice in both local production regions and with Western consumers, we have a strong desire to understand better the importance of the different traits that make up the quality of the rice grain and obtain a full picture of rice quality demographics. Rice is by no means a ‘one size fits all’ crop. Regional preferences are not only striking, they drive the market and hence are of major economic importance in any rice breeding / improvement strategy. In this analysis, we have engaged local experts across the world to perform a full assessment of all the major rice quality trait characteristics and importantly, to determine how these are combined in the most preferred varieties for each of their regions. Physical as well as biochemical characteristics have been monitored and this has resulted in the identification of no less than 18 quality trait combinations. This complexity immediately reveals the extent of the specificity of consumer preference. Nevertheless, further assessment of these combinations at the variety level reveals that several groups still comprise varieties which consumers can readily identify as being different. This emphasises the shortcomings in the current tools we have available to assess rice quality and raises the issue of how we might correct for this in the future. Only with additional tools and research will we be able to define directed strategies for rice breeding which are able to combine important agronomic features with the demands of local consumers for specific quality attributes and hence, design new, improved crop varieties which will be awarded success in the global market. PMID:24454799

  17. Diversity of global rice markets and the science required for consumer-targeted rice breeding.

    PubMed

    Calingacion, Mariafe; Laborte, Alice; Nelson, Andrew; Resurreccion, Adoracion; Concepcion, Jeanaflor Crystal; Daygon, Venea Dara; Mumm, Roland; Reinke, Russell; Dipti, Sharifa; Bassinello, Priscila Zaczuk; Manful, John; Sophany, Sakhan; Lara, Karla Cordero; Bao, Jinsong; Xie, Lihong; Loaiza, Katerine; El-hissewy, Ahmad; Gayin, Joseph; Sharma, Neerja; Rajeswari, Sivakami; Manonmani, Swaminathan; Rani, N Shobha; Kota, Suneetha; Indrasari, Siti Dewi; Habibi, Fatemeh; Hosseini, Maryam; Tavasoli, Fatemeh; Suzuki, Keitaro; Umemoto, Takayuki; Boualaphanh, Chanthkone; Lee, Huei Hong; Hung, Yiu Pang; Ramli, Asfaliza; Aung, Pa Pa; Ahmad, Rauf; Wattoo, Javed Iqbal; Bandonill, Evelyn; Romero, Marissa; Brites, Carla Moita; Hafeel, Roshni; Lur, Huu-Sheng; Cheaupun, Kunya; Jongdee, Supanee; Blanco, Pedro; Bryant, Rolfe; Thi Lang, Nguyen; Hall, Robert D; Fitzgerald, Melissa

    2014-01-01

    With the ever-increasing global demand for high quality rice in both local production regions and with Western consumers, we have a strong desire to understand better the importance of the different traits that make up the quality of the rice grain and obtain a full picture of rice quality demographics. Rice is by no means a 'one size fits all' crop. Regional preferences are not only striking, they drive the market and hence are of major economic importance in any rice breeding / improvement strategy. In this analysis, we have engaged local experts across the world to perform a full assessment of all the major rice quality trait characteristics and importantly, to determine how these are combined in the most preferred varieties for each of their regions. Physical as well as biochemical characteristics have been monitored and this has resulted in the identification of no less than 18 quality trait combinations. This complexity immediately reveals the extent of the specificity of consumer preference. Nevertheless, further assessment of these combinations at the variety level reveals that several groups still comprise varieties which consumers can readily identify as being different. This emphasises the shortcomings in the current tools we have available to assess rice quality and raises the issue of how we might correct for this in the future. Only with additional tools and research will we be able to define directed strategies for rice breeding which are able to combine important agronomic features with the demands of local consumers for specific quality attributes and hence, design new, improved crop varieties which will be awarded success in the global market. PMID:24454799

  18. Relationship between CH₄ and N₂O flux from soil and their ambient mixing ratio in a riparian rice-based agroecosystem of tropical region.

    PubMed

    Datta, A; Santra, S C; Adhya, T K

    2011-12-01

    Temporal variations of the ambient mixing ratio of greenhouse gas (CH(4) and N(2)O) in a riparian rice-based agro-ecosystem of tropical region were studied during 2005-2006 in coastal Odisha. The endeavour was made with the hypothesis that the ambient mixing ratio of CH(4) and N(2)O depends on the changes in the flux of CH(4) and N(2)O from the rice fields in the riparian rice ecosystems. A higher ambient mixing ratio of CH(4) was recorded during the tillering to grain filling stages of the rice crop, during both dry and wet seasons. The higher ambient mixing ratio of CH(4) during the wet season may attribute to the higher CH(4) emission from the rice field. The average mixing ratio of CH(4) was recorded as 1.84 ± 0.05 ppmv and 1.85 ± 0.06 ppmv during 2005 and 2006, respectively. The ambient CH(4) mixing ratio was recorded negatively correlated with the average ambient temperature. The N(2)O mixing ratio ranged from 261.57 to 399.44 ppbv with an average of 330.57 ppbv during 2005. However, the average mixing ratio of N(2)O was recorded as 318.83 ± 20.00 ppbv during 2006. The N(2)O mixing ratio was recorded to be negatively correlated with rainfall and average ambient temperature. Significant negative correlation (r = -0.209) of N(2)O with sunshine hours may attribute to the photochemical break down of N(2)O. The temporal variation of N(2)O flux from the rice field does not affect the ambient mixing ratio of N(2)O in the same way as in the case of the ambient mixing ratio of CH(4). However, the higher mixing ratio of N(2)O during the fallow period of the post monsoon period may attribute to the N(2)O flux from soil. Results indicate that intensively cultivated coastal ecosystems can be a major source of ambient greenhouse gas. PMID:22033728

  19. The Vehicle Ecosystem

    NASA Astrophysics Data System (ADS)

    Kuschel, Jonas

    Ubiquitous computing in the vehicle industry has primarily focused on sensor data serving different ubiquitous on-board services (e.g., crash detection, antilock brake systems, or air conditioning). These services mainly address vehicle drivers while driving. However, in view of the role of vehicles in today's society, it goes without saying that vehicles relate to more than just the driver or occupants; they are part of a larger ecosystem, including traffic participants, authorities, customers and the like. To serve the ecosystem with ubiquitous services based on vehicle sensor data, there is a need for an open information infrastructure that enables service development close to the customer. This paper presents results from a research project on designing such an infrastructure at a major European vehicle manufacturer. Our empirical data shows how the vehicle manufacturer's conceptualization of services disagrees with the needs of vehicle stakeholders in a more comprehensive vehicle ecosystem. In light of this, we discuss the effect on information infrastructure design and introduce the distinction between information infrastructure as product feature and service facilitator. In a more general way, we highlight the importance of information infrastructure to contextualize the vehicle as part of a larger ecosystem and thus support open innovation.

  20. In Brief: Coral ecosystems plan

    NASA Astrophysics Data System (ADS)

    Showstack, Randy

    2007-08-01

    With climate change, unsustainable fishing practices, and disease ``transforming coral communities at regional to global scales,'' a 30 July report from the U.S. Geological Survey outlines a strategy for conducting research on coral ecosystems. The report indicates that USGS coral ecosystem research will focus on three major themes during the next five years, as funding permits: reef structure, ecological integrity, and the role of marine reserves; land-based and local impacts; and responses to global change.

  1. Spotlight on rice: an update from the Rice Division

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This short paper is a 'spotlight' on the Rice Division of the Marican Association of Cereal Chemists, International and features an update and future challenges in rice research and industry. Since rice is consumed largely as milled white rice intact kernals, size, shape, color, appearance, function...

  2. Global efforts in managing rice blast disease

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice blast disease caused by the fungus Magnaporthe oryzae is a major destructive disease threatening global food security. Resistance (R) genes to M. oryzae are effective in preventing infections by strains of M. oryzae carry the corresponding avirulence (AVR) genes. Effectiveness of genetic resist...

  3. Registration of 'Cybonnet' Rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    ‘Cybonnet’ rice is a high-yielding, short-season, long-grain cultivar. It originated form the cross ‘Cypress’//’Newbonnet’/’Katy’ made at the University of Arkansas Rice Research and Extension Center in Stuttgart, AR. Cybonnet is similar in maturity to ‘Kaybonnet’ and ‘Wells’, is a simidwarf culti...

  4. Making rice even healthier!

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice is a naturally healthy food, but what if it could be made even healthier? Would Americans eat more rice if it could be advertised to be a 'New and Improved' source of calcium to promote bone growth, or iron to prevent anemia? Grocery stores are full of foods that are vitamin enhanced to attract...

  5. Registration of 'Medark' Rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    ‘Medark’ rice is a high-yielding, early maturing, semidwarf, medium-grain cultivar. It originated from the cross ‘Bengal’/’Short Rico’ and is similar in maturity to Bengal. It has improved disease resistance to rice blase, brown spot and straighthead. Medark has a lodging resistance slightly less...

  6. Sulfur Fertilization Changes the Community Structure of Rice Root-, and Soil- Associated Bacteria.

    PubMed

    Masuda, Sachiko; Bao, Zhihua; Okubo, Takashi; Sasaki, Kazuhiro; Ikeda, Seishi; Shinoda, Ryo; Anda, Mizue; Kondo, Ryuji; Mori, Yumi; Minamisawa, Kiwamu

    2016-03-26

    Under paddy field conditions, biological sulfur oxidation occurs in the oxidized surface soil layer and rhizosphere, in which oxygen leaks from the aerenchyma system of rice plants. In the present study, we examined community shifts in sulfur-oxidizing bacteria associated with the oxidized surface soil layer and rice roots under different sulfur fertilization conditions based on the 16S ribosomal RNA (rRNA) gene in order to explore the existence of oligotrophic sulfur-oxidizing bacteria in the paddy rice ecosystem. Rice plants were grown in pots with no fertilization (control) or CaCO3 or CaSO4 fertilization. A principal-coordinates analysis (PCoA) showed that CaSO4 fertilization markedly affected bacterial communities associated with rice roots and soil, whereas no significant differences were observed in plant growth among the fertilizer treatments examined. In rice roots, the relative abundance of Acidobacteria, Alphaproteobacteria, Gammaproteobacteria, and TM7 was significantly higher in CaSO4-fertilized pots than in control pots. Alphaproteobacteria, Bradyrhizobiaceae, and Methylocystaceae members were significantly more abundant in CaSO4-fertilized roots than in control roots. On the other hand, the abundance of Actinobacteria and Proteobacteria was lower in CaSO4-fertilized soil than in control soil. These results indicate that the bacteria associated with rice roots and soil responded to the sulfur amendment, suggesting that more diverse bacteria are involved in sulfur oxidation in the rice paddy ecosystem than previously considered. PMID:26947443

  7. Sulfur Fertilization Changes the Community Structure of Rice Root-, and Soil- Associated Bacteria

    PubMed Central

    Masuda, Sachiko; Bao, Zhihua; Okubo, Takashi; Sasaki, Kazuhiro; Ikeda, Seishi; Shinoda, Ryo; Anda, Mizue; Kondo, Ryuji; Mori, Yumi; Minamisawa, Kiwamu

    2016-01-01

    Under paddy field conditions, biological sulfur oxidation occurs in the oxidized surface soil layer and rhizosphere, in which oxygen leaks from the aerenchyma system of rice plants. In the present study, we examined community shifts in sulfur-oxidizing bacteria associated with the oxidized surface soil layer and rice roots under different sulfur fertilization conditions based on the 16S ribosomal RNA (rRNA) gene in order to explore the existence of oligotrophic sulfur-oxidizing bacteria in the paddy rice ecosystem. Rice plants were grown in pots with no fertilization (control) or CaCO3 or CaSO4 fertilization. A principal-coordinates analysis (PCoA) showed that CaSO4 fertilization markedly affected bacterial communities associated with rice roots and soil, whereas no significant differences were observed in plant growth among the fertilizer treatments examined. In rice roots, the relative abundance of Acidobacteria, Alphaproteobacteria, Gammaproteobacteria, and TM7 was significantly higher in CaSO4-fertilized pots than in control pots. Alphaproteobacteria, Bradyrhizobiaceae, and Methylocystaceae members were significantly more abundant in CaSO4-fertilized roots than in control roots. On the other hand, the abundance of Actinobacteria and Proteobacteria was lower in CaSO4-fertilized soil than in control soil. These results indicate that the bacteria associated with rice roots and soil responded to the sulfur amendment, suggesting that more diverse bacteria are involved in sulfur oxidation in the rice paddy ecosystem than previously considered. PMID:26947443

  8. Rice blast disease in Texas

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice is an important agricultural commodity in Texas, with an economic impact of more than $1 billion annually. Rice blast, caused by Magnaporthe oryzae, is one of the most devastating diseases in rice. Texas Rice Belt provides a warm, humid climate favorable for the infection and reproduction of M....

  9. Evaluation of Environmental Quality Productive Ecosystem Guayas (Ecuador).

    NASA Astrophysics Data System (ADS)

    Pozo, Wilson; Pardo, Francisco; Sanfeliu, Teófilo; Carrera, Gloria; Jordan, Manuel; Bech, Jaume; Roca, Núria

    2015-04-01

    Natural resources are deteriorating very rapidly in the Gulf of Guayaquil and the area of influence in the Guayas Basin due to human activity. Specific problems are generated by the mismanagement of the aquaculture industry affecting the traditional agricultural sectors: rice, banana, sugarcane, cocoa, coffee, and soya also studied, and by human and industrial settlements. The development of industrial activities such as aquaculture (shrimp building for shrimp farming in ponds) and agriculture, have increasingly contributed to the generation of waste, degrading and potentially toxic elements in high concentrations, which can have adverse effects on organisms in the ecosystems, in the health of the population and damage the ecological and environmental balance. The productive Guayas ecosystem, consists of three interrelated ecosystems, the Gulf of Guayaquil, the Guayas River estuary and the Guayas Basin buffer. The objective of this study was to evaluate the environmental quality of the productive Guayas ecosystem (Ecuador), through operational and specific objectives: 1) Draw up the transition coastal zone in the Gulf of Guayaquil, 2) Set temporal spatial variability of soil salinity in wetlands rice, Lower Guayas Basin, 3) evaluate the heavy metals in wetland rice in the Lower Basin of Guayas. The physical and chemical parameters of the soils have been studied. These are indicators of environmental quality. The multivariate statistical method showed the relations of similarities and dissimilarities between variables and parameter studies as stable. Moreover, the boundaries of coastal transition areas, temporal spatial variability of soil salinity and heavy metals in rice cultivation in the Lower Basin of Guayas were researched. The sequential studies included and discussed represent a broad framework of fundamental issues that has been valued as a basic component of the productive Guayas ecosystem. They are determinants of the environmental quality of the Guayas

  10. Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice blast disease, caused by the fungus Magnaporthe oryzae (formerly Magnaporthe grisea) is a major fungal disease threatening rice production worldwide. Genetic resistance in rice to M. oryzae typically belongs to a classic gene-for-gene system where a resistance (R) gene is effective in preventin...

  11. Crop management strategies and disease resistance control the severity of false smut and kernel smut of rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    False smut and kernel smut are common diseases of rice capable of severe epidemics with dramatic yield losses. The importance of rice smuts is often overlooked in the US, and highly susceptible varieties are now being grown on the majority of production acres in the southern rice producing states. O...

  12. Genetic control of inflorescence architecture during rice domestication.

    PubMed

    Zhu, Zuofeng; Tan, Lubin; Fu, Yongcai; Liu, Fengxia; Cai, Hongwei; Xie, Daoxin; Wu, Feng; Wu, Jianzhong; Matsumoto, Takashi; Sun, Chuanqing

    2013-01-01

    Inflorescence architecture is a key agronomical factor determining grain yield, and thus has been a major target of cereal crop domestication. Transition from a spread panicle typical of ancestral wild rice (Oryza rufipogon Griff.) to the compact panicle of present cultivars (O. sativa L.) was a crucial event in rice domestication. Here we show that the spread panicle architecture of wild rice is controlled by a dominant gene, OsLG1, a previously reported SBP-domain transcription factor that controls rice ligule development. Association analysis indicates that a single-nucleotide polymorphism-6 in the OsLG1 regulatory region led to a compact panicle architecture in cultivars during rice domestication. We speculate that the cis-regulatory mutation can fine-tune the spatial expression of the target gene, and that selection of cis-regulatory mutations might be an efficient strategy for crop domestication. PMID:23884108

  13. Climate change: implications for the yield of edible rice.

    PubMed

    Zhao, Xiangqian; Fitzgerald, Melissa

    2013-01-01

    Global warming affects not only rice yield but also grain quality. A better understanding of the effects of climate factors on rice quality provides information for new breeding strategies to develop varieties of rice adapted to a changing world. Chalkiness is a key trait of physical quality, and along with head rice yield, is used to determine the price of rice in all markets. In the present study, we show that for every ∼1% decrease in chalkiness, an increase of ∼1% in head rice yield follows, illustrating the dual impact of chalk on amount of marketable rice and its value. Previous studies in controlled growing conditions report that chalkiness is associated with high temperature. From 1980-2009 at IRRI, Los Baños, the Philippines, annual minimum and mean temperatures, and diurnal variation changed significantly. The objective of this study was to determine how climate impacts chalkiness in field conditions over four wet and dry seasons. We show that low relative humidity and a high vapour pressure deficit in the dry season associate with low chalk and high head rice yield in spite of higher maximum temperature, but in the opposite conditions of the wet season, chalk is high and head rice yield is low. The data therefore suggest that transpirational cooling is a key factor affecting chalkiness and head rice yield, and global warming per se might not be the major factor that decreases the amount and quality of rice, but other climate factors in combination, that enable the crop to maintain a cool canopy. PMID:23776635

  14. Methylated arsenic species in rice: geographical variation, origin, and uptake mechanisms.

    PubMed

    Zhao, Fang-Jie; Zhu, Yong-Guan; Meharg, Andrew A

    2013-05-01

    Rice is a major source of inorganic arsenic (iAs) in the human diet because paddy rice is efficient at accumulating As. Rice As speciation is dominated by iAs and dimethylarsinic acid (DMA). Here we review the global pattern in rice As speciation and the factors causing the variation. Rice produced in Asia shows a strong linear relationship between iAs and total As concentration with a slope of 0.78. Rice produced in Europe and the United States shows a more variable, but generally hyperbolic relationship with DMA being predominant in U.S. rice. Although there is significant genotypic variation in grain As speciation, the regional variations are primarily attributed to environmental factors. Emerging evidence also indicates that methylated As species in rice are derived from the soil, while rice plants lack the As methylation ability. Soil flooding and additions of organic matter increase microbial methylation of As, although the microbial community responsible for methylation is poorly understood. Compared with iAs, methylated As species are taken up by rice roots less efficiently but are transported to the grain much more efficiently, which may be an important factor responsible for the spikelet sterility disorder (straight-head disease) in rice. DMA is a weak carcinogen, but the level of ingestion from rice consumption is much lower than that of concern. Questions that require further investigations are identified. PMID:23521218

  15. Temporal interactions of plant - insect - predator after infection of bacterial pathogen on rice plants

    PubMed Central

    Sun, Ze; Liu, Zhuang; Zhou, Wen; Jin, Huanan; Liu, Hao; Zhou, Aiming; Zhang, Aijun; Wang, Man-Qun

    2016-01-01

    Pathogenic infection on plants may affect interactions of host-plants with their herbivores, as well as the herbivores with their predators. In this study, the effects of infection by pathogenic bacterium Xanthomonas oryzae pv. oryzae (Xoo), which causes a vascular disease in rice, on rice plants and consequent interactions with a rice herbivore, brown rice planthopper (BPH) Nilaparvata lugens, and its major predator, Cyrtorhinus lividipennis, were investigated. The results showed that the rice plants exhibited increased resistance to BPH only at 3 d post-inoculation of Xoo, while the Xoo infection did not affect the development and fecundity of BPH. BPH exhibited a higher preference to Xoo infected rice plants, whereas C. lividipennis preferred the Xoo infected rice plants after BPH fed, but preferred healthy rice plants without BPH fed. Volatile organic compounds emitted from Xoo rice were significantly higher than those from healthy rice plants, Xoo infection on BPH fed plants caused rice plants to emit more the herbivore-induced plant volatiles, while all of these changes correlated to the temporal dimension. These results demonstrated that Xoo infection significantly influenced the interactions of rice plants with two non-vectors, BPH and its predator, although these effects exhibited in a temporal pattern after infection. PMID:27185548

  16. Temporal interactions of plant - insect - predator after infection of bacterial pathogen on rice plants.

    PubMed

    Sun, Ze; Liu, Zhuang; Zhou, Wen; Jin, Huanan; Liu, Hao; Zhou, Aiming; Zhang, Aijun; Wang, Man-Qun

    2016-01-01

    Pathogenic infection on plants may affect interactions of host-plants with their herbivores, as well as the herbivores with their predators. In this study, the effects of infection by pathogenic bacterium Xanthomonas oryzae pv. oryzae (Xoo), which causes a vascular disease in rice, on rice plants and consequent interactions with a rice herbivore, brown rice planthopper (BPH) Nilaparvata lugens, and its major predator, Cyrtorhinus lividipennis, were investigated. The results showed that the rice plants exhibited increased resistance to BPH only at 3 d post-inoculation of Xoo, while the Xoo infection did not affect the development and fecundity of BPH. BPH exhibited a higher preference to Xoo infected rice plants, whereas C. lividipennis preferred the Xoo infected rice plants after BPH fed, but preferred healthy rice plants without BPH fed. Volatile organic compounds emitted from Xoo rice were significantly higher than those from healthy rice plants, Xoo infection on BPH fed plants caused rice plants to emit more the herbivore-induced plant volatiles, while all of these changes correlated to the temporal dimension. These results demonstrated that Xoo infection significantly influenced the interactions of rice plants with two non-vectors, BPH and its predator, although these effects exhibited in a temporal pattern after infection. PMID:27185548

  17. Functional diversity of jasmonates in rice.

    PubMed

    Liu, Zheng; Zhang, Shumin; Sun, Ning; Liu, Hongyun; Zhao, Yanhong; Liang, Yuling; Zhang, Liping; Han, Yuanhuai

    2015-12-01

    Phytohormone jasmonates (JA) play essential roles in plants, such as regulating development and growth, responding to environmental changes, and resisting abiotic and biotic stresses. During signaling, JA interacts, either synergistically or antagonistically, with other hormones, such as salicylic acid (SA), gibberellin (GA), ethylene (ET), auxin, brassinosteroid (BR), and abscisic acid (ABA), to regulate gene expression in regulatory networks, conferring physiological and metabolic adjustments in plants. As an important staple crop, rice is a major nutritional source for human beings and feeds one third of the world's population. Recent years have seen significant progress in the understanding of the JA pathway in rice. In this review, we summarize the diverse functions of JA, and discuss the JA interplay with other hormones, as well as light, in this economically important crop. We believe that a better understanding of the JA pathway will lead to practical biotechnological applications in rice breeding and cultivation. PMID:26054241

  18. Feasibility of Using Rice Hulls as Bedding for Laboratory Mice.

    PubMed

    Carbone, Elizabeth T; Kass, Philip H; Evans, Kristin D

    2016-01-01

    Factors that are considered when selecting laboratory mouse bedding include animal health and comfort, cost, effects on personnel, and bioactive properties. Corncob is economical and facilitates low intracage ammonia but has undesirable influences on some endocrine studies. Rice hulls are an economical material that has not been well characterized as a bedding substrate. In this pilot study, we compared various aspects of bedding performance of rice hulls and other materials. On a per-volume basis, rice hulls were less absorbent than was corncob bedding. Rice hulls had higher odds than did corncob or reclaimed wood pulp of having moisture present at the bedding surface. The results of the absorbency tests coupled with the results of preliminary monitoring of intracage ammonia raised concern about the ability of rice hulls to control ammonia levels sufficiently in cages with high occupancy. However, ammonia was negligible when cages contained 5 young adult female mice. The relative expression of 3 cytochrome p450 genes was compared among mice housed on rice hulls, corncob, reclaimed wood pulp, or pine shavings. The expression of Cyp1a2 was 1.7 times higher in the livers of mice housed on rice hulls than on pine shavings, but other differences were not statistically significant. This study provides information on the merits of rice hulls as laboratory mouse bedding. Their relatively poor moisture control is a major disadvantage that might preclude their widespread use. PMID:27177559

  19. Biofortification of rice with lysine using endogenous histones.

    PubMed

    Wong, H W; Liu, Q; Sun, S S M

    2015-02-01

    Rice is the most consumed cereal grain in the world, but deficient in the essential amino acid lysine. Therefore, people in developing countries with limited food diversity who rely on rice as their major food source may suffer from malnutrition. Biofortification of stable crops by genetic engineering provides a fast and sustainable method to solve this problem. In this study, two endogenous rice lysine-rich histone proteins, RLRH1 and RLRH2, were over-expressed in rice seeds to achieve lysine biofortification. Their protein sequences passed an allergic sequence-based homology test. Their accumulations in rice seeds were raised to a moderate level by the use of a modified rice glutelin 1 promoter with lowered expression strength to avoid the occurrence of physiological abnormalities like unfolded protein response. The expressed proteins were further targeted to protein storage vacuoles for stable storage using a glutelin 1 signal peptide. The lysine content in the transgenic rice seeds was enhanced by up to 35 %, while other essential amino acids remained balanced, meeting the nutritional standards of the World Health Organization. No obvious unfolded protein response was detected. Different degrees of chalkiness, however, were detected in the transgenic seeds, and were positively correlated with both the levels of accumulated protein and lysine enhancement. This study offered a solution to the lysine deficiency in rice, while at the same time addressing concerns about food safety and physiological abnormalities in biofortified crops. PMID:25512028

  20. Determination of contents and antioxidant activity of free and bound phenolics compounds and in vitro digestibility of commercial black and red rice (Oryza sativa L.) varieties.

    PubMed

    Sumczynski, Daniela; Kotásková, Eva; Družbíková, Helena; Mlček, Jiří

    2016-11-15

    Black and red rices (Oryza sativa L.) were analysed for total flavonoids and phenolics and the HPLC profile including both free and bound phenolic fractions. Moreover, antioxidant activity and in vitro digestibility was determined. Content of flavonoids and polyphenols as well as antioxidant activity was higher in free phenolic fractions. Bound flavonoids in black rices were not significant contributors to antioxidant activity. The main free phenolics in black rices were ferulic, protocatechuic and trans-p-coumaric acids, while the major free phenolics in red rices were catechin, protocatechuic and caffeic acids. The main bound phenolics in black rices were ferulic and vanillic acids and quercetin, in red rice types, they were ferulic, syringic, trans-p-coumaric acids and quercetin. Newly, the presence of m-coumaric acid in red rices was detected. Steam cooked rices showed very high levels of organic matter digestibility, whereas red rices were significantly more digestible than black rices (p<0.05). PMID:27283641

  1. 7 CFR 868.310 - Grades and grade requirements for the classes Long Grain Milled Rice, Medium Grain Milled Rice...

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... Grain Milled Rice, Medium Grain Milled Rice, Short Grain Milled Rice, and Mixed Milled Rice. (See also Â... classes Long Grain Milled Rice, Medium Grain Milled Rice, Short Grain Milled Rice, and Mixed Milled Rice...) (percent) Chalky kernels 1,2 In long grain rice (percent) In medium or short grain rice (percent)...

  2. Soil respiration, labile carbon pools, and enzyme activities as affected by tillage practices in a tropical rice-maize-cowpea cropping system.

    PubMed

    Neogi, S; Bhattacharyya, P; Roy, K S; Panda, B B; Nayak, A K; Rao, K S; Manna, M C

    2014-07-01

    In order to identify the viable option of tillage practices in rice-maize-cowpea cropping system that could cut down soil carbon dioxide (CO2) emission, sustain grain yield, and maintain better soil quality in tropical low land rice ecology soil respiration in terms of CO2 emission, labile carbon (C) pools, water-stable aggregate C fractions, and enzymatic activities were investigated in a sandy clay loam soil. Soil respiration is the major pathway of gaseous C efflux from terrestrial systems and acts as an important index of ecosystem functioning. The CO2-C emissions were quantified in between plants and rows throughout the year in rice-maize-cowpea cropping sequence both under conventional tillage (CT) and minimum tillage (MT) practices along with soil moisture and temperature. The CO2-C emissions, as a whole, were 24 % higher in between plants than in rows, and were in the range of 23.4-78.1, 37.1-128.1, and 28.6-101.2 mg m(-2) h(-1) under CT and 10.7-60.3, 17.3-99.1, and 17.2-79.1 mg m(-2) h(-1) under MT in rice, maize, and cowpea, respectively. The CO2-C emission was found highest under maize (44 %) followed by rice (33 %) and cowpea (23 %) irrespective of CT and MT practices. In CT system, the CO2-C emission increased significantly by 37.1 % with respect to MT on cumulative annual basis including fallow. The CO2-C emission per unit yield was at par in rice and cowpea signifying the beneficial effect of MT in maintaining soil quality and reduction of CO2 emission. The microbial biomass C (MBC), readily mineralizable C (RMC), water-soluble C (WSC), and permanganate-oxidizable C (PMOC) were 19.4, 20.4, 39.5, and 15.1 % higher under MT than CT. The C contents in soil aggregate fraction were significantly higher in MT than CT. Soil enzymatic activities like, dehydrogenase, fluorescein diacetate, and β-glucosidase were significantly higher by 13.8, 15.4, and 27.4 % under MT compared to CT. The soil labile C pools, enzymatic activities, and

  3. ECOSYSTEM HEALTH: ENERGY INDICATORS

    EPA Science Inventory

    1. Ecosystem Health and Ecological Integrity
    2. Historical Background on Ecosystem Health
    3. Energy Systems Analysis, Health and Emergy
    4. Energy and Ecosystems
    5. Direct Measures of Ecosystem Health
    6. Indirect Measures of Ecosystem Health

  4. Impacts of climate change on rice yield: A comparison of four model performances

    SciTech Connect

    Bachelet, D.; Gay, C.A.

    1993-01-01

    Increasing concentrations of carbon dioxide (CO2) and other greenhouse gases are expected to modify temperature and rainfall the next 50-100 years. Mechanisms and hypotheses of plant response to these changes could be incorporated in models predicting crop yield estimates to better understand potential consequences of such changes. Asia is particularly important since demographic forecasts indicate rice supplies worldwide will need to increase by 1.6% annually to the year 2000 to match population growth estimates. The objectives of the paper are (1) review the major hypotheses and/or experimental results regarding rice sensitivity to climate change and (2) evaluate the suitability of existing rice models for assessing the impact of global climate change on rice production. A review of four physiologically-based rice models (RICEMOD, CERES-Rice, MACROS, RICESYS) illustrates their potential to predict rice responses to elevated CO2 and increased temperature.

  5. Improving Rice Zinc Biofortification Success Rates Through Genetic and Crop Management Approaches in a Changing Environment

    PubMed Central

    Nakandalage, Niluka; Nicolas, Marc; Norton, Robert M.; Hirotsu, Naoki; Milham, Paul J.; Seneweera, Saman

    2016-01-01

    Though rice is the predominant source of energy and micronutrients for more than half of the world population, it does not provide enough zinc (Zn) to match human nutritional requirements. Moreover, climate change, particularly rising atmospheric carbon dioxide concentration, reduces the grain Zn concentration. Therefore, rice biofortification has been recognized as a key target to increase the grain Zn concentration to address global Zn malnutrition. Major bottlenecks for Zn biofortification in rice are identified as low Zn uptake, transport and loading into the grain; however, environmental and genetic contributions to grain Zn accumulation in rice have not been fully explored. In this review, we critically analyze the key genetic, physiological and environmental factors that determine Zn uptake, transport and utilization in rice. We also explore the genetic diversity of rice germplasm to develop new genetic tools for Zn biofortification. Lastly, we discuss the strategic use of Zn fertilizer for developing biofortified rice. PMID:27375636

  6. Herbivory by resident geese: The loss and recovery of wild rice along the tidal Patuxent River

    USGS Publications Warehouse

    Haramis, G.M.; Kearns, G.D.

    2007-01-01

    Well known for a fall spectacle of maturing wild rice (Zizania aquatica) and migrant waterbirds, the tidal freshwater marshes of the Patuxent River, Maryland, USA, experienced a major decline in wild rice during the 1990s. We conducted experiments in 1999 and 2000 with fenced exclosures and discovered herbivory by resident Canada geese (Branta canadensis). Grazing by geese eliminated rice outside exclosures, whereas protected plants achieved greater size, density, and produced more panicles than rice occurring in natural stands. The observed loss of rice on the Patuxent River reflects both the sensitivity of this annual plant to herbivory and the destructive nature of an overabundance of resident geese on natural marsh vegetation. Recovery of rice followed 2 management actions: hunting removal of approximately 1,700 geese during a 4-year period and reestablishment of rice through a large-scale fencing and planting program.

  7. Improving Rice Zinc Biofortification Success Rates Through Genetic and Crop Management Approaches in a Changing Environment.

    PubMed

    Nakandalage, Niluka; Nicolas, Marc; Norton, Robert M; Hirotsu, Naoki; Milham, Paul J; Seneweera, Saman

    2016-01-01

    Though rice is the predominant source of energy and micronutrients for more than half of the world population, it does not provide enough zinc (Zn) to match human nutritional requirements. Moreover, climate change, particularly rising atmospheric carbon dioxide concentration, reduces the grain Zn concentration. Therefore, rice biofortification has been recognized as a key target to increase the grain Zn concentration to address global Zn malnutrition. Major bottlenecks for Zn biofortification in rice are identified as low Zn uptake, transport and loading into the grain; however, environmental and genetic contributions to grain Zn accumulation in rice have not been fully explored. In this review, we critically analyze the key genetic, physiological and environmental factors that determine Zn uptake, transport and utilization in rice. We also explore the genetic diversity of rice germplasm to develop new genetic tools for Zn biofortification. Lastly, we discuss the strategic use of Zn fertilizer for developing biofortified rice. PMID:27375636

  8. Monitoring rice cropping systems using China environment satellite data in Poyang Lake region

    NASA Astrophysics Data System (ADS)

    Li, Peng; Jiang, Luguang; Feng, Zhiming

    Threshold method was utilized to discriminate rice cropping systems based on the noticeable variation of Normalized Difference Vegetation Index (NDVI) during key growth stages in Poyang Lake Region, China. This area is dominated by double- and single rice cropping systems which tend to change due to the frequent ecosystem management policies. We used a new satellite data from the CCD camera sensor with 30 m spatial resolution onboard the China Environmental Satellite HJ-1A and B. The HJ -1A/B with a better temporal resolution of four days provides more data options for effective and timely agriculture monitoring. The result showed that there is evident difference of NDVI between single and late rice during mid October when they are in different growth stages. The areas of single and late rice in 2011 were 2988.6 km2 and 3105.9 km2, respectively. Paddy field distribution map and local paddy rice calendar are requisite to move the threshold method into other multiple rice cropping regions. The study suggests that the China Environmental Satellite HJ-1A/B have the potential to rice cropping system in the double to triple rice cropping systems area. With many advantages of HJ-1A/B, like, finer spatial and temporal resolution, bigger imaging swath, it may make rice cropping system monitoring more feasible and operational.

  9. Effect of Rice Cultivation Systems on Indigenous Arbuscular Mycorrhizal Fungal Community Structure

    PubMed Central

    Watanarojanaporn, Nantida; Boonkerd, Nantakorn; Tittabutr, Panlada; Longtonglang, Aphakorn; Young, J. Peter W.; Teaumroong, Neung

    2013-01-01

    Arbuscular mycorrhizal fungi (AMF) in an agricultural ecosystem are necessary for proper management of beneficial symbiosis. Here we explored how the patterns of the AMF community in rice roots were affected by rice cultivation systems (the system of rice intensification [SRI] and the conventional rice cultivation system [CS]), and by compost application during growth stages. Rice plants harvested from SRI-managed plots exhibited considerably higher total biomass, root dry weight, and seed fill than those obtained from conventionally managed plots. Our findings revealed that all AMF sequences observed from CS plots belonged (only) to the genus Glomus, colonizing in rice roots grown under this type of cultivation, while rice roots sown in SRI showed sequences belonging to both Glomus and Acaulospora. The AMF community was compared between the different cultivation types (CS and SRI) and compost applications by principle component analysis. In all rice growth stages, AMF assemblages of CS management were not separated from those of SRI management. The distribution of AMF community composition based on T-RFLP data showed that the AMF community structure was different among four cultivation systems, and there was a gradual increase of Shannon-Weaver indices of diversity (H′) of the AMF community under SRI during growth stages. The results of this research indicated that rice grown in SRI-managed plots had more diverse AMF communities than those grown in CS plots. PMID:23719585

  10. Effect of rice cultivation systems on indigenous arbuscular mycorrhizal fungal community structure.

    PubMed

    Watanarojanaporn, Nantida; Boonkerd, Nantakorn; Tittabutr, Panlada; Longtonglang, Aphakorn; Young, J Peter W; Teaumroong, Neung

    2013-01-01

    Arbuscular mycorrhizal fungi (AMF) in an agricultural ecosystem are necessary for proper management of beneficial symbiosis. Here we explored how the patterns of the AMF community in rice roots were affected by rice cultivation systems (the system of rice intensification [SRI] and the conventional rice cultivation system [CS]), and by compost application during growth stages. Rice plants harvested from SRI-managed plots exhibited considerably higher total biomass, root dry weight, and seed fill than those obtained from conventionally managed plots. Our findings revealed that all AMF sequences observed from CS plots belonged (only) to the genus Glomus, colonizing in rice roots grown under this type of cultivation, while rice roots sown in SRI showed sequences belonging to both Glomus and Acaulospora. The AMF community was compared between the different cultivation types (CS and SRI) and compost applications by principle component analysis. In all rice growth stages, AMF assemblages of CS management were not separated from those of SRI management. The distribution of AMF community composition based on T-RFLP data showed that the AMF community structure was different among four cultivation systems, and there was a gradual increase of Shannon-Weaver indices of diversity (H') of the AMF community under SRI during growth stages. The results of this research indicated that rice grown in SRI-managed plots had more diverse AMF communities than those grown in CS plots. PMID:23719585

  11. Northward expansion of paddy rice in northeastern Asia during 2000-2014

    NASA Astrophysics Data System (ADS)

    Dong, J.; Xiao, X.; Zhang, G.; Menarguez, M. A.; Choi, C. Y.; Qin, Y.; Luo, P.; Zhang, Y.; Moore, B.

    2016-04-01

    Paddy rice in monsoon Asia plays an important role in global food security and climate change. Here we documented annual dynamics of paddy rice areas in the northern frontier of Asia, including northeastern (NE) China, North Korea, South Korea, and Japan, from 2000 to 2014 through analysis of satellite images. The paddy rice area has increased by 120% (2.5 to 5.5 million ha) in NE China, in comparison to a decrease in South Korea and Japan, and the paddy rice centroid shifted northward from 41.16°N to 43.70°N (~310 km) in this period. Market, technology, policy, and climate together drove the rice expansion in NE China. The increased use of greenhouse nurseries, improved rice cultivars, agricultural subsidy policy, and a rising rice price generally promoted northward paddy rice expansion. The potential effects of large rice expansion on climate change and ecosystem services should be paid more attention to in the future.

  12. Introducing non-flooded crops in rice-dominated landscapes: Impact on carbon, nitrogen and water budgets

    NASA Astrophysics Data System (ADS)

    Jauker, Frank; Wassmann, Reiner; Amelung, Wulf; Breuer, Lutz; Butterbach-Bahl, Klaus; Conrad, Ralf; Ekschmitt, Klemens; Goldbach, Heiner; He, Yao; John, Katharina; Kiese, Ralf; Kraus, David; Reinhold-Hurek, Barbara; Siemens, Jan; Weller, Sebastian; Wolters, Volkmar

    2013-04-01

    Rice production consumes about 30% of all freshwater used worldwide and 45% in Asia. Turning away from permanently flooded rice cropping systems for mitigating future water scarcity and reducing methane emissions, however, will alter a variety of ecosystem services with potential adverse effects to both the environment and agricultural production. Moreover, implementing systems that alternate between flooded and non-flooded crops increases the risk of disruptive effects. The multi-disciplinary DFG research unit ICON aims at exploring and quantifying the ecological consequences of altered water regimes (flooded vs. non-flooded), crop diversification (irrigated rice vs. aerobic rice vs. maize), and different fertilization strategies (conventional, site-specific, and zero N fertilization). ICON particularly focuses on the biogeochemical cycling of carbon and nitrogen, green-house gas (GHG) emissions, water balance, soil biotic processes and other important ecosystem services. The overarching goal is to provide the basic process understanding that is necessary for balancing the revenues and environmental impacts of high-yield rice cropping systems while maintaining their vital ecosystem services. To this aim, a large-scale field experiment has been established at the experimental farm of the International Rice Research Institute (IRRI, Philippines). Ultimately, the experimental results are analyzed in the context of management scenarios by an integrated modeling of crop development (ORYZA), carbon and nitrogen cycling (MoBiLE-DNDC), and water fluxes (CMF), providing the basis for developing pathways to a conversion of rice-based systems towards higher yield potentials under minimized environmental impacts. In our presentation, we demonstrate the set-up of the controlled large-scale field experiment for simultaneous assessment of carbon and nitrogen fluxes and water budgets. We show and discuss first results for: - Quantification and assessment of the net-fluxes of CH4

  13. Major depression

    MedlinePlus

    Depression - major; Depression - clinical; Clinical depression; Unipolar depression; Major depressive disorder ... Doctors do not know the exact causes of depression. It is believed that chemical changes in the ...

  14. Evolution of regional to global paddy rice mapping methods: A review

    NASA Astrophysics Data System (ADS)

    Dong, Jinwei; Xiao, Xiangming

    2016-09-01

    Paddy rice agriculture plays an important role in various environmental issues including food security, water use, climate change, and disease transmission. However, regional and global paddy rice maps are surprisingly scarce and sporadic despite numerous efforts in paddy rice mapping algorithms and applications. With the increasing need for regional to global paddy rice maps, this paper reviewed the existing paddy rice mapping methods from the literatures ranging from the 1980s to 2015. In particular, we illustrated the evolution of these paddy rice mapping efforts, looking specifically at the future trajectory of paddy rice mapping methodologies. The biophysical features and growth phases of paddy rice were analyzed first, and feature selections for paddy rice mapping were analyzed from spectral, polarimetric, temporal, spatial, and textural aspects. We sorted out paddy rice mapping algorithms into four categories: (1) Reflectance data and image statistic-based approaches, (2) vegetation index (VI) data and enhanced image statistic-based approaches, (3) VI or RADAR backscatter-based temporal analysis approaches, and (4) phenology-based approaches through remote sensing recognition of key growth phases. The phenology-based approaches using unique features of paddy rice (e.g., transplanting) for mapping have been increasingly used in paddy rice mapping. Current applications of these phenology-based approaches generally use coarse resolution MODIS data, which involves mixed pixel issues in Asia where smallholders comprise the majority of paddy rice agriculture. The free release of Landsat archive data and the launch of Landsat 8 and Sentinel-2 are providing unprecedented opportunities to map paddy rice in fragmented landscapes with higher spatial resolution. Based on the literature review, we discussed a series of issues for large scale operational paddy rice mapping.

  15. Large Aquatic Ecosystem Restoration Monitoring for Decision Makers: Monitoring to Target and Evaluate Success of Ecosystem Restoration

    EPA Science Inventory

    Monitoring ecosystem restoration at various scales in LAEs can be challenging, frustrating and rewarding. Some of the major ecosystem restoration monitoring occurring in LAEs include: seagrass expansion/contraction; dead zone sizes; oyster reefs; sea turtle nesting; toxic and nu...

  16. Astronomical Ecosystems

    NASA Astrophysics Data System (ADS)

    Neuenschwander, D. E.; Finkenbinder, L. R.

    2004-05-01

    Just as quetzals and jaguars require specific ecological habitats to survive, so too must planets occupy a tightly constrained astronomical habitat to support life as we know it. With this theme in mind we relate the transferable features of our elementary astronomy course, "The Astronomical Basis of Life on Earth." Over the last five years, in a team-taught course that features a spring break field trip to Costa Rica, we have introduced astronomy through "astronomical ecosystems," emphasizing astronomical constraints on the prospects for life on Earth. Life requires energy, chemical elements, and long timescales, and we emphasize how cosmological, astrophysical, and geological realities, through stabilities and catastrophes, create and eliminate niches for biological life. The linkage between astronomy and biology gets immediate and personal: for example, studies in solar energy production are followed by hikes in the forest to examine the light-gathering strategies of photosynthetic organisms; a lesson on tides is conducted while standing up to our necks in one on a Pacific beach. Further linkages between astronomy and the human timescale concerns of biological diversity, cultural diversity, and environmental sustainability are natural and direct. Our experience of teaching "astronomy as habitat" strongly influences our "Astronomy 101" course in Oklahoma as well. This "inverted astrobiology" seems to transform our student's outlook, from the universe being something "out there" into something "we're in!" We thank the SNU Science Alumni support group "The Catalysts," and the SNU Quetzal Education and Research Center, San Gerardo de Dota, Costa Rica, for their support.

  17. Genome-wide association of rice blast disease resistance and yield-related components of rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Robust disease resistance may require an expenditure of energy that may limit crop yield potential. In the present study, a subset of a USDA rice core collection consisting of 151 accessions was selected using a major blast resistance (R) gene Pi-ta marker, and was genotyped with 156 simple sequence...

  18. Characterization of rice blast resistance genes in rice germplasm with monogenic lines and pathogenicity assays

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Resistance (R) genes have been effectively deployed in preventing rice crop losses due to the fungus Magnaporthe oryzae. In the present study, we studied the interaction between 24 monogenic lines carrying at least one major R gene, Pia, Pib, Pii, Pik, Pik-h, Pik-m, Pik-p, Pik-s, Pish, Pit, Pita, Pi...

  19. Cadmium content in rice and its daily intake in various countries

    SciTech Connect

    Rivai, Ida Farida; Koyama, Hiroshi; Suzuki, Shosuke )

    1990-06-01

    Man ingests cadmium daily from foods and beverages. The major source of cadmium intake is rice for rice eating countries. Cadmium in rice comes from soil via rice plant roots. Rice may thus be the best indicator for the environmental monitoring of cadmium especially in rice eating countries. It is also easy to sample, transport and conserve. Several recent surveys on cadmium content in rice and daily cadmium intake have been reported. However, little data are available on geographical differences in daily cadmium intake from rice. The tolerable weekly intake for cadmium as proposed by FAO/WHO is 400-500 micrograms/person or 57-71 micrograms/day/person weighing 70 kg. Ninety two percent of world rice production is from the Asia-Pacific region, from which samples were obtained for the present study. The following countries were included: India, China, Bangladesh, Thailand, Indonesia, Philippines, Japan, and Korea. This study was conducted to determine cadmium content in rice from the above countries and based on the data obtained, daily cadmium intake from rice and the total daily cadmium intake were calculated.

  20. Mapping paddy rice distribution using multi-temporal Landsat imagery in the Sanjiang Plain, northeast China

    NASA Astrophysics Data System (ADS)

    Jin, Cui; Xiao, Xiangming; Dong, Jinwei; Qin, Yuanwei; Wang, Zongming

    2016-03-01

    Information of paddy rice distribution is essential for food production and methane emission calculation. Phenology-based algorithms have been utilized in the mapping of paddy rice fields by identifying the unique flooding and seedling transplanting phases using multi-temporal moderate resolution (500 m to 1 km) images. In this study, we developed simple algorithms to identify paddy rice at a fine resolution at the regional scale using multi-temporal Landsat imagery. Sixteen Landsat images from 2010-2012 were used to generate the 30 m paddy rice map in the Sanjiang Plain, northeast China—one of the major paddy rice cultivation regions in China. Three vegetation indices, Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI), and Land Surface Water Index (LSWI), were used to identify rice fields during the flooding/transplanting and ripening phases. The user and producer accuracies of paddy rice on the resultant Landsat-based paddy rice map were 90% and 94%, respectively. The Landsat-based paddy rice map was an improvement over the paddy rice layer on the National Land Cover Dataset, which was generated through visual interpretation and digitalization on the fine-resolution images. The agricultural census data substantially underreported paddy rice area, raising serious concern about its use for studies on food security.

  1. Retrieving canopy height and density of paddy rice from Radarsat-2 images with a canopy scattering model

    NASA Astrophysics Data System (ADS)

    Zhang, Yuan; Liu, Xiaohui; Su, Shiliang; Wang, Cuizhen

    2014-05-01

    Quantification of rice biophysical properties is important not only for rice growth monitoring and cropping management, but for understanding carbon cycle in agricultural ecosystems. In this study, a rice canopy scattering model (RCSM) was firstly utilized to simulate rice backscatter with a root mean square error (RMSE) <1 dB in comparison with the C-band, HH-polarization Radarsat-2 images. And then, by integrating the model with a generic algorithm optimization tools (GOAT), canopy height and density were separately retrieved from Radarsat-2 images acquired in three rice growth stages (elongation stage, heading stage and yellow ripening stage). Accuracy analysis showed that the two parameters could be retrieved with the RMSE of 5.4 cm in height, and 26 (#/m2) in density. The study demonstrated the potential of Radarsat-2 SAR data for quantitative mapping of biophysical parameters of paddy rice.

  2. The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication.

    PubMed

    Wang, Hongru; Xu, Xun; Vieira, Filipe Garrett; Xiao, Yunhua; Li, Zhikang; Wang, Jun; Nielsen, Rasmus; Chu, Chengcai

    2016-07-01

    Low-coverage whole-genome sequencing is an effective strategy for genome-wide association studies in humans, due to the availability of large reference panels for genotype imputation. However, it is unclear whether this strategy can be utilized in other species without reference panels. Using simulations, we show that this approach is even more relevant in inbred species such as rice (Oryza sativa L.), which are effectively haploid, allowing easy haplotype construction and imputation-based genotype calling, even without the availability of large reference panels. We sequenced 203 rice varieties with well-characterized phenotypes from the United States Department of Agriculture Rice Mini-Core Collection at an average depth of 1.5× and used the data for mapping three traits. For the first two traits, amylose content and seed length, our approach leads to direct identification of the previously identified causal SNPs in the major-effect loci. For the third trait, pericarp color, an important trait underwent selection during domestication, we identified a new major-effect locus. Although known loci can explain color variation in the varieties of two main subspecies of Asian domesticated rice, japonica and indica, the new locus identified is unique to another domesticated rice subgroup, aus, and together with existing loci, can fully explain the major variation in pericarp color in aus. Our discovery of a unique genetic basis of white pericarp in aus provides an example of convergent evolution during rice domestication and suggests that aus may have a domestication history independent of japonica and indica. PMID:27179918

  3. Resequencing rice genomes: an emerging new era of rice genomics.

    PubMed

    Huang, Xuehui; Lu, Tingting; Han, Bin

    2013-04-01

    Rice is a model system for crop genomics studies. Much of the early work on rice genomics focused on analyzing genome-wide genetic variation to further understand rice gene functions in agronomic traits and to generate data and resources for rice research. The advent of next-generation high-throughput DNA sequencing technologies and the completion of high-quality reference genome sequences have enabled the development of sequencing-based genotyping and genome-wide association studies (GWAS) that have significantly advanced rice genetics research. This has led to the emergence of a new era of rice genomics aimed at bridging the knowledge gap between genotype and phenotype in rice. These technologies have also led to pyramid breeding through genomics-assisted selection, which will be useful in breeding elite varieties suitable for sustainable agriculture. Here, we review the recent advances in rice genomics and discuss the future of this line of research. PMID:23295340

  4. ESRP approach to using final ecosystem services

    EPA Science Inventory

    The U.S. Environmental Protection Agency has developed the ecosystem Services Research Program (ESRP) as one of its major research efforts. The goal of this program is to create “A comprehensive theory and practice for quantifying ecosystem services so that their value and their...

  5. Chesapeake Bay: Introduction to an Ecosystem.

    ERIC Educational Resources Information Center

    Environmental Protection Agency, Washington, DC.

    The Chesapeake Bay is the largest estuary in the contiguous United States. The Bay and its tidal tributaries make up the Chesapeake Bay ecosystem. This document, which focuses of various aspects of this ecosystem, is divided into four major parts. The first part traces the geologic history of the Bay, describes the overall physical structure of…

  6. Selenium Characterization in the Global Rice Supply Chain

    SciTech Connect

    Williams, Paul N.; Lombi, Enzo; Sun, Guo-Xin; Scheckel, Kirk; Zhu, Yong-Guan; Feng, Xinbin; Zhu, Jianming; Carey, Anne-Marie; Adomako, Eureka; Lawgali, Youseff; Deacon, Claire; Meharg, Andrew A.

    2009-08-13

    For up to 1 billion people worldwide, insufficient dietary intake of selenium (Se) is a serious health constraint. Cereals are the dominant Se source for those on low protein diets, as typified by the global malnourished population. With crop Se content constrained largely by underlying geology, regional soil Se variations are often mirrored by their locally grown staples. Despite this, the Se concentrations of much of the world's rice, the mainstay of so many, is poorly characterized, for both total Se content and Se speciation. In this study, 1092 samples of market sourced polished rice were obtained. The sampled rice encompassed dominant rice producing and exporting countries. Rice from the U.S. and India were found to be the most enriched, while mean average levels were lowest in Egyptian rice: {approx}32-fold less than their North American equivalents. By weighting country averages by contribution to either global production or export, modeled baseline values for both were produced. Based on a daily rice consumption of 300 g day{sup -1}, around 75% of the grains from the production and export pools would fail to provide 70% of daily recommended Se intakes. Furthermore, Se localization and speciation characterization using X-ray fluorescence ({mu}-XRF) and X-ray absorption near edge structure ({mu}-XANES) techniques were investigated in a Se-rich sample. The results revealed that the large majority of Se in the endosperm was present in organic forms.

  7. Modeling greenhouse gas emissions from rice-based production systems: Sensitivity and upscaling

    NASA Astrophysics Data System (ADS)

    Li, Changsheng; Mosier, Arvin; Wassmann, Reiner; Cai, Zucong; Zheng, Xunhua; Huang, Yao; Tsuruta, Haruo; Boonjawat, Jariya; Lantin, Rhoda

    2004-03-01

    A biogeochemical model, Denitrification-Decomposition (DNDC), was modified to enhance its capacity of predicting greenhouse gas (GHG) emissions from paddy rice ecosystems. The major modifications focused on simulations of anaerobic biogeochemistry and rice growth as well as parameterization of paddy rice management. The new model was tested for its sensitivities to management alternatives and variations in natural conditions including weather and soil properties. The test results indicated that (1) varying management practices could substantially affect carbon dioxide (CO2), methane (CH4), or nitrous oxide (N2O) emissions from rice paddies; (2) soil properties affected the impacts of management alternatives on GHG emissions; and (3) the most sensitive management practices or soil factors varied for different GHGs. For estimating GHG emissions under certain management conditions at regional scale, the spatial heterogeneity of soil properties (e.g., texture, SOC content, pH) are the major source of uncertainty. An approach, the most sensitive factor (MSF) method, was developed for DNDC to bring the uncertainty under control. According to the approach, DNDC was run twice for each grid cell with the maximum and minimum values of the most sensitive soil factors commonly observed in the grid cell. The simulated two fluxes formed a range, which was wide enough to include the "real" flux from the grid cell with a high probability. This approach was verified against a traditional statistical approach, the Monte Carlo analysis, for three selected counties or provinces in China, Thailand, and United States. Comparison between the results from the two methods indicated that 61-99% of the Monte Carlo-produced GHG fluxes were located within the MSA-produced flux ranges. The result implies that the MSF method is feasible and reliable to quantify the uncertainties produced in the upscaling processes. Equipped with the MSF method, DNDC modeled emissions of CO2, CH4, and N2O from

  8. Rice fortification: an emerging opportunity to contribute to the elimination of vitamin and mineral deficiency worldwide.

    PubMed

    Muthayya, Sumithra; Hall, Jessica; Bagriansky, Jack; Sugimoto, Jonathan; Gundry, Daniel; Matthias, Dipika; Prigge, Shane; Hindle, Peter; Moench-Pfanner, Regina; Maberly, Glen

    2012-12-01

    Vitamin and mineral deficiencies are ranked among the top causes of poor health and disability in the world. These deficiencies damage developing brains, impair learning ability, increase susceptibility to infections, and reduce the work productivity of nations. Food fortification is a sustainable, cost-effective approach to reducing vitamin and mineral deficiency. As the staple food for an estimated 3 billion people, rice has the potential to fill an obvious gap in current fortification programs. In recent years, new technologies have produced fortified rice kernels that are efficacious in reducing vitamin and mineral deficiency. There are opportunities to fortify a significant share of rice that comes from large mills supplying centralized markets and national welfare programs in major rice-growing countries. The rice export markets, which handle 30 million MT of rice annually, also present a key fortification opportunity. The cost of fortifying rice is only 1.5% to 3% of the current retail price of rice. Countries that mandate rice fortification have the strongest evidence for achieving wide coverage and impact. The Rice Fortification Resource Group (RiFoRG), a global network of public and private partners that offers technical and advocacy support for rice fortification, has a vision of promoting rice fortification worldwide. It has a targeted approach, engaging multisector partners in key countries where the opportunities are greatest and there is receptivity to early adoption of large-scale rice fortification. The challenges are real, the imperative to address them is powerful, and the opportunities to deliver the promise of rice fortification are clear. PMID:23424896

  9. Climate Feedback on Methane Emissions From Terrestrial Ecosystems

    NASA Astrophysics Data System (ADS)

    Butenhoff, C. L.; Sithole, A.; Khalil, A. K.; Rice, A. L.; Shearer, M. J.

    2012-12-01

    Terrestrial ecosystems are one of the important components of the climate system that are bound to change and cause feedbacks with global warming. One major mechanism of this feedback is the response of biological processes, mostly bacteria, that produce or consume greenhouse gases such as carbon dioxide (CO2) and methane (CH4). Here we are concerned with the emissions of CH4 which is considered the most important non-CO2 greenhouse gas because it has more than doubled during the last century and is about 20 times more potent per kilogram once emitted to the atmosphere. Methane is produced by anaerobic methanogens in wetland soils and rice paddies, and is consumed by methanotrophic bacteria in aerobic and upland soils. Together these sources account for about 40-60% of global methane emissions. Properly accounting for the feedback of CH4 emissions with temperature in Earth Systems Models (ESMs) remains an open challenge in part due to the lack of experimental data. Reported Q10 values (factor by which reaction rate increases for a 10°C rise in temperature) of CH4 flux from wetlands and rice agriculture vary over an order of magnitude for reasons that are not well known contributing to this uncertainty. We report here a suite of experimental measurements to determine the Q10 of CH4 flux from rice agriculture and to understand how it depends on the temperature responses of its underlying processes. Since processes may have different Q10 values it is essential that these are properly represented in ESMs. We grew rice plants in temperature-controlled mesocosms at 20, 24, 28 and 32°C over two seasons (years 2009 - 2010) and measured flux, production and oxidation rates, at regular intervals using static chambers, soil core incubations, and carbon isotopes (δ13C-CH4), respectively. In addition we used qPCR techniques to measure methyl coenzyme M reductase (mcrA) and particulate methane monooxygenase (pmoA) genes from mesocosm soil cores to establish the temperature

  10. Degradation of chlorpyrifos in tropical rice soils.

    PubMed

    Das, Subhasis; Adhya, Tapan K

    2015-04-01

    Chlorpyrifos [O,O-diethyl O-(3,5,6-trichloro-2-pyridinol) phosphorothioate] is used worldwide as an agricultural insecticide against a broad spectrum of insect pests of economically important crops including rice, and soil application to control termites. The insecticide mostly undergoes hydrolysis to diethyl thiophosphoric acid (DETP) and 3,5,6-trichloro-2-pyridinol (TCP), and negligible amounts of other intermediate products. In a laboratory-cum-greenhouse study, chlorpyrifos, applied at a rate of 10 mg kg(-1) soil to five tropical rice soils of wide physico-chemical variability, degraded with a half-life ranging from 27.07 to 3.82 days. TCP was the major metabolite under both non-flooded and flooded conditions. Chlorpyrifos degradation had significant negative relationship with electrical conductivity (EC), cation exchange capacity (CEC), clay and sand contents of the soils under non-flooded conditions. Results indicate that degradation of chlorpyrifos was accelerated with increase in its application frequency, across the representative rice soils. Management regimes including moisture content and presence or absence of rice plants also influenced the process. Biotic factors also play an important role in the degradation of chlorpyrifos as demonstrated by its convincing degradation in mineral salts medium inoculated with non-sterile soil suspension. PMID:25617866