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Sample records for metric mapping registration

  1. Cortical Hemisphere Registration Via Large Deformation Diffeomorphic Metric Curve Mapping

    PubMed Central

    Qiu, Anqi; Miller, Michael I.

    2010-01-01

    We present large deformation diffeomorphic metric curve mapping (LDDMM-Curve) for registering cortical hemispheres. We showed global cortical hemisphere matching and evaluated the mapping accuracy in five subregions of the cortex in fourteen MRI scans. PMID:18051058

  2. Accelerating Neuroimage Registration through Parallel Computation of Similarity Metric

    PubMed Central

    Luo, Yun-gang; Liu, Ping; Shi, Lin; Luo, Yishan; Yi, Lei; Li, Ang; Qin, Jing; Heng, Pheng-Ann; Wang, Defeng

    2015-01-01

    Neuroimage registration is crucial for brain morphometric analysis and treatment efficacy evaluation. However, existing advanced registration algorithms such as FLIRT and ANTs are not efficient enough for clinical use. In this paper, a GPU implementation of FLIRT with the correlation ratio (CR) as the similarity metric and a GPU accelerated correlation coefficient (CC) calculation for the symmetric diffeomorphic registration of ANTs have been developed. The comparison with their corresponding original tools shows that our accelerated algorithms can greatly outperform the original algorithm in terms of computational efficiency. This paper demonstrates the great potential of applying these registration tools in clinical applications. PMID:26352412

  3. Metrics for comparison of crystallographic maps

    SciTech Connect

    Urzhumtsev, Alexandre; Afonine, Pavel V.; Lunin, Vladimir Y.; Terwilliger, Thomas C.; Adams, Paul D.

    2014-10-01

    Numerical comparison of crystallographic contour maps is used extensively in structure solution and model refinement, analysis and validation. However, traditional metrics such as the map correlation coefficient (map CC, real-space CC or RSCC) sometimes contradict the results of visual assessment of the corresponding maps. This article explains such apparent contradictions and suggests new metrics and tools to compare crystallographic contour maps. The key to the new methods is rank scaling of the Fourier syntheses. The new metrics are complementary to the usual map CC and can be more helpful in map comparison, in particular when only some of their aspects, such as regions of high density, are of interest.

  4. Image registration with auto-mapped control volumes

    SciTech Connect

    Schreibmann, Eduard; Xing Lei

    2006-04-15

    Many image registration algorithms rely on the use of homologous control points on the two input image sets to be registered. In reality, the interactive identification of the control points on both images is tedious, difficult, and often a source of error. We propose a two-step algorithm to automatically identify homologous regions that are used as a priori information during the image registration procedure. First, a number of small control volumes having distinct anatomical features are identified on the model image in a somewhat arbitrary fashion. Instead of attempting to find their correspondences in the reference image through user interaction, in the proposed method, each of the control regions is mapped to the corresponding part of the reference image by using an automated image registration algorithm. A normalized cross-correlation (NCC) function or mutual information was used as the auto-mapping metric and a limited memory Broyden-Fletcher-Goldfarb-Shanno algorithm (L-BFGS) was employed to optimize the function to find the optimal mapping. For rigid registration, the transformation parameters of the system are obtained by averaging that derived from the individual control volumes. In our deformable calculation, the mapped control volumes are treated as the nodes or control points with known positions on the two images. If the number of control volumes is not enough to cover the whole image to be registered, additional nodes are placed on the model image and then located on the reference image in a manner similar to the conventional BSpline deformable calculation. For deformable registration, the established correspondence by the auto-mapped control volumes provides valuable guidance for the registration calculation and greatly reduces the dimensionality of the problem. The performance of the two-step registrations was applied to three rigid registration cases (two PET-CT registrations and a brain MRI-CT registration) and one deformable registration of

  5. Metrics for comparison of crystallographic maps

    DOE PAGESBeta

    Urzhumtsev, Alexandre; Afonine, Pavel V.; Lunin, Vladimir Y.; Terwilliger, Thomas C.; Adams, Paul D.

    2014-10-01

    Numerical comparison of crystallographic contour maps is used extensively in structure solution and model refinement, analysis and validation. However, traditional metrics such as the map correlation coefficient (map CC, real-space CC or RSCC) sometimes contradict the results of visual assessment of the corresponding maps. This article explains such apparent contradictions and suggests new metrics and tools to compare crystallographic contour maps. The key to the new methods is rank scaling of the Fourier syntheses. The new metrics are complementary to the usual map CC and can be more helpful in map comparison, in particular when only some of their aspects,more » such as regions of high density, are of interest.« less

  6. Image registration using binary boundary maps

    NASA Technical Reports Server (NTRS)

    Andrus, J. F.; Campbell, C. W.; Jayroe, R. R.

    1978-01-01

    Registration technique that matches binary boundary maps extracted from raw data, rather than matching actual data, is considerably faster than other techniques. Boundary maps, which are digital representations of regions where image amplitudes change significantly, typically represent data compression of 60 to 70 percent. Maps allow average products to be computed with addition rather than multiplication, further reducing computation time.

  7. Digital image registration method using boundary maps

    NASA Technical Reports Server (NTRS)

    Andrus, J. F.; Campbell, C. W.; Jayroe, R. R.

    1975-01-01

    A new method of automatic image registration (matching) is presented. It requires that the original single or multichannel images first be converted to binary boundary maps having elements equal to zero or unity. The method corrects for both translational and rotational errors. One feature of the technique is the rapid calculation of a pseudo correlation matrix NCOR using only integer additions. It is argued that the use of boundary maps is advisable when the data from the two images are acquired under different conditions; i.e., weather conditions, lighting conditions, etc.

  8. Automatic terrain elevation mapping and registration

    NASA Technical Reports Server (NTRS)

    Ramapriyan, H. K.; Murray, C. W.; Strong, J. P.; Blodget, H. W.

    1984-01-01

    Optimum radar illumination geometries for stereoscopic analysis of surface topography are determined. Correlation and image processing experiments on synthetic aperture radar (SAR) data for improved information extraction are conducted. Model of the geometry of the multiple SIR-B views of the Earth are developed the sensitivity of the derived terrain altitude data to the various system parameters is established. The limits of accuracy of terrain data achievable with shuttle imaging radar (SIR-B) are derived. Algorithms for matching multiple SIR-B images to generate digital terrain maps are developed. Finally, the use of such terrain maps in geometric correction and registration of SIR-B and LANDSAT Thematic Mapper data is demonstrated.

  9. MetricMap: an embedding technique for processing distance-based queries in metric spaces.

    PubMed

    Wang, Jason T L; Wang, Xiong; Shasha, Dennis; Zhang, Kaizhong

    2005-10-01

    In this paper, we present an embedding technique, called MetricMap, which is capable of estimating distances in a pseudometric space. Given a database of objects and a distance function for the objects, which is a pseudometric, we map the objects to vectors in a pseudo-Euclidean space with a reasonably low dimension while preserving the distance between two objects approximately. Such an embedding technique can be used as an approximate oracle to process a broad class of distance-based queries. It is also adaptable to data mining applications such as data clustering and classification. We present the theory underlying MetricMap and conduct experiments to compare MetricMap with other methods including MVP-tree and M-tree in processing the distance-based queries. Experimental results on both protein and RNA data show the good performance and the superiority of MetricMap over the other methods. PMID:16240772

  10. Local Metric Learning in 2D/3D Deformable Registration With Application in the Abdomen

    PubMed Central

    Chou, Chen-Rui; Mageras, Gig; Pizer, Stephen

    2015-01-01

    In image-guided radiotherapy (IGRT) of disease sites subject to respiratory motion, soft tissue deformations can affect localization accuracy. We describe the application of a method of 2D/3D deformable registration to soft tissue localization in abdomen. The method, called registration efficiency and accuracy through learning a metric on shape (REALMS), is designed to support real-time IGRT. In a previously developed version of REALMS, the method interpolated 3D deformation parameters for any credible deformation in a deformation space using a single globally-trained Riemannian metric for each parameter. We propose a refinement of the method in which the metric is trained over a particular region of the deformation space, such that interpolation accuracy within that region is improved. We report on the application of the proposed algorithm to IGRT in abdominal disease sites, which is more challenging than in lung because of low intensity contrast and nonrespiratory deformation. We introduce a rigid translation vector to compensate for nonrespiratory deformation, and design a special region-of-interest around fiducial markers implanted near the tumor to produce a more reliable registration. Both synthetic data and actual data tests on abdominal datasets show that the localized approach achieves more accurate 2D/3D deformable registration than the global approach. PMID:24771575

  11. Whole brain diffeomorphic metric mapping via integration of sulcal and gyral curves, cortical surfaces, and images.

    PubMed

    Du, Jia; Younes, Laurent; Qiu, Anqi

    2011-05-01

    This paper introduces a novel large deformation diffeomorphic metric mapping algorithm for whole brain registration where sulcal and gyral curves, cortical surfaces, and intensity images are simultaneously carried from one subject to another through a flow of diffeomorphisms. To the best of our knowledge, this is the first time that the diffeomorphic metric from one brain to another is derived in a shape space of intensity images and point sets (such as curves and surfaces) in a unified manner. We describe the Euler-Lagrange equation associated with this algorithm with respect to momentum, a linear transformation of the velocity vector field of the diffeomorphic flow. The numerical implementation for solving this variational problem, which involves large-scale kernel convolution in an irregular grid, is made feasible by introducing a class of computationally friendly kernels. We apply this algorithm to align magnetic resonance brain data. Our whole brain mapping results show that our algorithm outperforms the image-based LDDMM algorithm in terms of the mapping accuracy of gyral/sulcal curves, sulcal regions, and cortical and subcortical segmentation. Moreover, our algorithm provides better whole brain alignment than combined volumetric and surface registration (Postelnicu et al., 2009) and hierarchical attribute matching mechanism for elastic registration (HAMMER) (Shen and Davatzikos, 2002) in terms of cortical and subcortical volume segmentation. PMID:21281722

  12. Distorting the metric fabric of the cognitive map.

    PubMed

    Jeffery, Kate J

    2015-06-01

    Grid cells are neurons whose regularly spaced firing fields form apparently symmetric arrays, or grids, that are thought to collectively provide an environment-independent metric framework for the brain's cognitive map of space. However, two recent studies show that grids are naturally distorted, revealing greater local environment-specific effects than previously recognized. PMID:25882915

  13. California Sea Cliff Metrics: Mapping and Validation

    NASA Astrophysics Data System (ADS)

    Palaseanu, M.; Thatcher, C.; Danielson, J.; Logan, J. B.; Foxgrover, A. C.; Brock, J. C.; Barnard, P.

    2015-12-01

    Seacliff erosion is a serious hazard with implications for coastal management, and is often estimated using successive hand digitized cliff tops or bases (toe) to assess cliff retreat. We developed an automated procedure to extract the location of the cliff top from high resolution lidar-derived digital elevation models using transects generated at approximately 1-m intervals. The automated method to define cliff tops is repeatable, takes advantage of detailed topographic information within high-resolution elevation data, and is more efficient than hand-digitizing. To validate the results obtained from a 2010 aerial lidar survey, we conducted a terrestrial lidar (tlidar) survey at Bonny Doon beach near Santa Cruz California in 2014 and mapped the location of the cliff tops using real-time kinematic GPS. Bonny Doon beach has highly irregular cliffs, with several small sea caves and erosion features that were not distinguishable in the aerial lidar digital terrain model (DTM). We extracted the location of the cliff top from the tlidar point cloud along the same transects used previously to automatically derive cliff tops from the aerial lidar derived DTM. The minimum horizontal distance between the tlidar derived cliff top points and GPS points was calculated. The error measurements between GPS and terrestrial lidar are 0.19 m mean absolute error (MAE) and 0.51 m root mean square error (RMSE) respectively. The MAE and the RMSE between the GPS and aerial lidar cliff top points were 0.96 and 1.82 m respectively. The larger errors between aerial lidar cliff top points and GPS are likely due to the failure to remove all vegetation from the aerial lidar data, the positional accuracy of the aerial lidar, and a 4-year gap between surveys. The error assessment indicates that the automated procedure mapped the cliff top location successfully using both the aerial and terrestrial lidar, although the cliff top delineation based on the tlidar data was more accurate.

  14. Large Deformation Multiresolution Diffeomorphic Metric Mapping for Multiresolution Cortical Surfaces: A Coarse-to-Fine Approach.

    PubMed

    Tan, Mingzhen; Qiu, Anqi

    2016-09-01

    Brain surface registration is an important tool for characterizing cortical anatomical variations and understanding their roles in normal cortical development and psychiatric diseases. However, surface registration remains challenging due to complicated cortical anatomy and its large differences across individuals. In this paper, we propose a fast coarse-to-fine algorithm for surface registration by adapting the large diffeomorphic deformation metric mapping (LDDMM) framework for surface mapping and show improvements in speed and accuracy via a multiresolution analysis of surface meshes and the construction of multiresolution diffeomorphic transformations. The proposed method constructs a family of multiresolution meshes that are used as natural sparse priors of the cortical morphology. At varying resolutions, these meshes act as anchor points where the parameterization of multiresolution deformation vector fields can be supported, allowing the construction of a bundle of multiresolution deformation fields, each originating from a different resolution. Using a coarse-to-fine approach, we show a potential reduction in computation cost along with improvements in sulcal alignment when compared with LDDMM surface mapping. PMID:27254865

  15. Marker-free registration of forest terrestrial laser scanner data pairs with embedded confidence metrics

    DOE PAGESBeta

    Van Aardt, Jan; Romanczyk, Paul; van Leeuwen, Martin; Kelbe, David; Cawse-Nicholson, Kerry

    2016-04-04

    Terrestrial laser scanning (TLS) has emerged as an effective tool for rapid comprehensive measurement of object structure. Registration of TLS data is an important prerequisite to overcome the limitations of occlusion. However, due to the high dissimilarity of point cloud data collected from disparate viewpoints in the forest environment, adequate marker-free registration approaches have not been developed. The majority of studies instead rely on the utilization of artificial tie points (e.g., reflective tooling balls) placed within a scene to aid in coordinate transformation. We present a technique for generating view-invariant feature descriptors that are intrinsic to the point cloud datamore » and, thus, enable blind marker-free registration in forest environments. To overcome the limitation of initial pose estimation, we employ a voting method to blindly determine the optimal pairwise transformation parameters, without an a priori estimate of the initial sensor pose. To provide embedded error metrics, we developed a set theory framework in which a circular transformation is traversed between disjoint tie point subsets. This provides an upper estimate of the Root Mean Square Error (RMSE) confidence associated with each pairwise transformation. Output RMSE errors are commensurate with the RMSE of input tie points locations. Thus, while the mean output RMSE=16.3cm, improved results could be achieved with a more precise laser scanning system. This study 1) quantifies the RMSE of the proposed marker-free registration approach, 2) assesses the validity of embedded confidence metrics using receiver operator characteristic (ROC) curves, and 3) informs optimal sample spacing considerations for TLS data collection in New England forests. Furthermore, while the implications for rapid, accurate, and precise forest inventory are obvious, the conceptual framework outlined here could potentially be extended to built environments.« less

  16. Registration of Heat Capacity Mapping Mission day and night images

    NASA Technical Reports Server (NTRS)

    Watson, K.; Hummer-Miller, S.; Sawatzky, D. L. (Principal Investigator)

    1982-01-01

    Neither iterative registration, using drainage intersection maps for control, nor cross correlation techniques were satisfactory in registering day and night HCMM imagery. A procedure was developed which registers the image pairs by selecting control points and mapping the night thermal image to the daytime thermal and reflectance images using an affine transformation on a 1300 by 1100 pixel image. The resulting image registration is accurate to better than two pixels (RMS) and does not exhibit the significant misregistration that was noted in the temperature-difference and thermal-inertia products supplied by NASA. The affine transformation was determined using simple matrix arithmetic, a step that can be performed rapidly on a minicomputer.

  17. Overlay improvement by exposure map based mask registration optimization

    NASA Astrophysics Data System (ADS)

    Shi, Irene; Guo, Eric; Chen, Ming; Lu, Max; Li, Gordon; Li, Rivan; Tian, Eric

    2015-03-01

    Along with the increased miniaturization of semiconductor electronic devices, the design rules of advanced semiconductor devices shrink dramatically. [1] One of the main challenges of lithography step is the layer-to-layer overlay control. Furthermore, DPT (Double Patterning Technology) has been adapted for the advanced technology node like 28nm and 14nm, corresponding overlay budget becomes even tighter. [2][3] After the in-die mask registration (pattern placement) measurement is introduced, with the model analysis of a KLA SOV (sources of variation) tool, it's observed that registration difference between masks is a significant error source of wafer layer-to-layer overlay at 28nm process. [4][5] Mask registration optimization would highly improve wafer overlay performance accordingly. It was reported that a laser based registration control (RegC) process could be applied after the pattern generation or after pellicle mounting and allowed fine tuning of the mask registration. [6] In this paper we propose a novel method of mask registration correction, which can be applied before mask writing based on mask exposure map, considering the factors of mask chip layout, writing sequence, and pattern density distribution. Our experiment data show if pattern density on the mask keeps at a low level, in-die mask registration residue error in 3sigma could be always under 5nm whatever blank type and related writer POSCOR (position correction) file was applied; it proves random error induced by material or equipment would occupy relatively fixed error budget as an error source of mask registration. On the real production, comparing the mask registration difference through critical production layers, it could be revealed that registration residue error of line space layers with higher pattern density is always much larger than the one of contact hole layers with lower pattern density. Additionally, the mask registration difference between layers with similar pattern density

  18. SU-E-J-159: Intra-Patient Deformable Image Registration Uncertainties Quantified Using the Distance Discordance Metric

    SciTech Connect

    Saleh, Z; Thor, M; Apte, A; Deasy, J; Sharp, G; Muren, L

    2014-06-01

    Purpose: The quantitative evaluation of deformable image registration (DIR) is currently challenging due to lack of a ground truth. In this study we test a new method proposed for quantifying multiple-image based DIRrelated uncertainties, for DIR of pelvic images. Methods: 19 patients were analyzed, each with 6 CT scans, who previously had radiotherapy for prostate cancer. Manually delineated structures for rectum and bladder, which served as ground truth structures, were delineated on the planning CT and each subsequent scan. For each patient, voxel-by-voxel DIR-related uncertainties were evaluated, following B-spline based DIR, by applying a previously developed metric, the distance discordance metric (DDM; Saleh et al., PMB (2014) 59:733). The DDM map was superimposed on the first acquired CT scan and DDM statistics were assessed, also relative to two metrics estimating the agreement between the propagated and the manually delineated structures. Results: The highest DDM values which correspond to greatest spatial uncertainties were observed near the body surface and in the bowel due to the presence of gas. The mean rectal and bladder DDM values ranged from 1.1–11.1 mm and 1.5–12.7 mm, respectively. There was a strong correlation in the DDMs between the rectum and bladder (Pearson R = 0.68 for the max DDM). For both structures, DDM was correlated with the ratio between the DIR-propagated and manually delineated volumes (R = 0.74 for the max rectal DDM). The maximum rectal DDM was negatively correlated with the Dice Similarity Coefficient between the propagated and the manually delineated volumes (R= −0.52). Conclusion: The multipleimage based DDM map quantified considerable DIR variability across different structures and among patients. Besides using the DDM for quantifying DIR-related uncertainties it could potentially be used to adjust for uncertainties in DIR-based accumulated dose distributions.

  19. Deformable structure registration of bladder through surface mapping

    SciTech Connect

    Li Xiong; Viswanathan, Akila; Stewart, Alexandra J.; Haker, Steven; Tempany, Clare M.; Chin, Lee M.; Cormack, Robert A.

    2006-06-15

    Cumulative dose distributions in fractionated radiation therapy depict the dose to normal tissues and therefore may permit an estimation of the risk of normal tissue complications. However, calculation of these distributions is highly challenging because of interfractional changes in the geometry of patient anatomy. This work presents an algorithm for deformable structure registration of the bladder and the verification of the accuracy of the algorithm using phantom and patient data. In this algorithm, the registration process involves conformal mapping of genus zero surfaces using finite element analysis, and guided by three control landmarks. The registration produces a correspondence between fractions of the triangular meshes used to describe the bladder surface. For validation of the algorithm, two types of balloons were inflated gradually to three times their original size, and several computerized tomography (CT) scans were taken during the process. The registration algorithm yielded a local accuracy of 4 mm along the balloon surface. The algorithm was then applied to CT data of patients receiving fractionated high-dose-rate brachytherapy to the vaginal cuff, with the vaginal cylinder in situ. The patients' bladder filling status was intentionally different for each fraction. The three required control landmark points were identified for the bladder based on anatomy. Out of an Institutional Review Board (IRB) approved study of 20 patients, 3 had radiographically identifiable points near the bladder surface that were used for verification of the accuracy of the registration. The verification point as seen in each fraction was compared with its predicted location based on affine as well as deformable registration. Despite the variation in bladder shape and volume, the deformable registration was accurate to 5 mm, consistently outperforming the affine registration. We conclude that the structure registration algorithm presented works with reasonable accuracy and

  20. Parametric registration of cross test error maps for optical surfaces

    NASA Astrophysics Data System (ADS)

    Chen, Shanyong; Dai, Yifan; Nie, Xuqing; Li, Shengyi

    2015-07-01

    It is necessary to quantitatively compare two measurement results which are typically in the form of error maps of the same surface figure for the purpose of cross test. The error maps are obtained by different methods or even different instruments. Misalignment exists between them including the tip-tilt, lateral shift, clocking and scaling. A fast registration algorithm is proposed to correct the misalignment before we can calculate the pixel-to-pixel difference of the two maps. It is formulated as simply a linear least-squares problem. Sensitivity of registration error to the misalignment is simulated with low-frequency features and mid-frequency features in the surface error maps represented by Zernike polynomials and spatially correlated functions, respectively. Finally by applying it to two cases of real datasets, the algorithm is validated to be comparable in accuracy to general non-linear optimization method based on sequential quadratic programming while the computation time is superiorly incomparable.

  1. The role of image registration in brain mapping.

    PubMed

    Toga, A W; Thompson, P M

    2001-01-01

    Image registration is a key step in a great variety of biomedical imaging applications. It provides the ability to geometrically align one dataset with another, and is a prerequisite for all imaging applications that compare datasets across subjects, imaging modalities, or across time. Registration algorithms also enable the pooling and comparison of experimental findings across laboratories, the construction of population-based brain atlases, and the creation of systems to detect group patterns in structural and functional imaging data. We review the major types of registration approaches used in brain imaging today. We focus on their conceptual basis, the underlying mathematics, and their strengths and weaknesses in different contexts. We describe the major goals of registration, including data fusion, quantification of change, automated image segmentation and labeling, shape measurement, and pathology detection. We indicate that registration algorithms have great potential when used in conjunction with a digital brain atlas, which acts as a reference system in which brain images can be compared for statistical analysis. The resulting armory of registration approaches is fundamental to medical image analysis, and in a brain mapping context provides a means to elucidate clinical, demographic, or functional trends in the anatomy or physiology of the brain. PMID:19890483

  2. Multimodal registration of retinal images using self organizing maps.

    PubMed

    Matsopoulos, George K; Asvestas, Pantelis A; Mouravliansky, Nikolaos A; Delibasis, Konstantinos K

    2004-12-01

    In this paper, an automatic method for registering multimodal retinal images is presented. The method consists of three steps: the vessel centerline detection and extraction of bifurcation points only in the reference image, the automatic correspondence of bifurcation points in the two images using a novel implementation of the self organizing maps and the extraction of the parameters of the affine transform using the previously obtained correspondences. The proposed registration algorithm was tested on 24 multimodal retinal pairs and the obtained results show an advantageous performance in terms of accuracy with respect to the manual registration. PMID:15575412

  3. Orbit Design Based on the Global Maps of Telecom Metrics

    NASA Technical Reports Server (NTRS)

    Lee, Charles H.; Cheung, Kar-Ming; Edwards, Chad; Noreen, Gary K.; Vaisnys, Arvydas

    2004-01-01

    In this paper we describe an orbit design aide tool, called Telecom Orbit Analysis and Simulation Tool(TOAST). Although it can be used for studying and selecting orbits for any planet, we solely concentrate on its use for Mars. By specifying the six orbital elements for an orbit, a time frame of interest, a horizon mask angle, and some telecom parameters such as the transmitting power, frequency, antenna gains, antenna losses, link margin, received threshold powers for the rates, etc. this tool enables the user to view the animation of the orbit in two and three-dimensional different telecom metrics at any point on the Mars, namely the global planetary map.

  4. The distance discordance metric-a novel approach to quantifying spatial uncertainties in intra- and inter-patient deformable image registration.

    PubMed

    Saleh, Ziad H; Apte, Aditya P; Sharp, Gregory C; Shusharina, Nadezhda P; Wang, Ya; Veeraraghavan, Harini; Thor, Maria; Muren, Ludvig P; Rao, Shyam S; Lee, Nancy Y; Deasy, Joseph O

    2014-02-01

    Previous methods to estimate the inherent accuracy of deformable image registration (DIR) have typically been performed relative to a known ground truth, such as tracking of anatomic landmarks or known deformations in a physical or virtual phantom. In this study, we propose a new approach to estimate the spatial geometric uncertainty of DIR using statistical sampling techniques that can be applied to the resulting deformation vector fields (DVFs) for a given registration. The proposed DIR performance metric, the distance discordance metric (DDM), is based on the variability in the distance between corresponding voxels from different images, which are co-registered to the same voxel at location (X) in an arbitrarily chosen 'reference' image. The DDM value, at location (X) in the reference image, represents the mean dispersion between voxels, when these images are registered to other images in the image set. The method requires at least four registered images to estimate the uncertainty of the DIRs, both for inter- and intra-patient DIR. To validate the proposed method, we generated an image set by deforming a software phantom with known DVFs. The registration error was computed at each voxel in the 'reference' phantom and then compared to DDM, inverse consistency error (ICE), and transitivity error (TE) over the entire phantom. The DDM showed a higher Pearson correlation (Rp) with the actual error (Rp ranged from 0.6 to 0.9) in comparison with ICE and TE (Rp ranged from 0.2 to 0.8). In the resulting spatial DDM map, regions with distinct intensity gradients had a lower discordance and therefore, less variability relative to regions with uniform intensity. Subsequently, we applied DDM for intra-patient DIR in an image set of ten longitudinal computed tomography (CT) scans of one prostate cancer patient and for inter-patient DIR in an image set of ten planning CT scans of different head and neck cancer patients. For both intra- and inter-patient DIR, the spatial DDM

  5. Supine and prone colon registration using quasi-conformal mapping.

    PubMed

    Zeng, Wei; Marino, Joseph; Chaitanya Gurijala, Krishna; Gu, Xianfeng; Kaufman, Arie

    2010-01-01

    In virtual colonoscopy, CT scans are typically acquired with the patient in both supine (facing up) and prone (facing down) positions. The registration of these two scans is desirable so that the user can clarify situations or confirm polyp findings at a location in one scan with the same location in the other, thereby improving polyp detection rates and reducing false positives. However, this supine-prone registration is challenging because of the substantial distortions in the colon shape due to the patient's change in position. We present an efficient algorithm and framework for performing this registration through the use of conformal geometry to guarantee that the registration is a diffeomorphism (a one-to-one and onto mapping). The taeniae coli and colon flexures are automatically extracted for each supine and prone surface, employing the colon geometry. The two colon surfaces are then divided into several segments using the flexures, and each segment is cut along a taenia coli and conformally flattened to the rectangular domain using holomorphic differentials. The mean curvature is color encoded as texture images, from which feature points are automatically detected using graph cut segmentation, mathematic morphological operations, and principal component analysis. Corresponding feature points are found between supine and prone and are used to adjust the conformal flattening to be quasi-conformal, such that the features become aligned. We present multiple methods of visualizing our results, including 2D flattened rendering, corresponding 3D endoluminal views, and rendering of distortion measurements. We demonstrate the efficiency and efficacy of our registration method by illustrating matched views on both the 2D flattened colon images and in the 3D volume rendered colon endoluminal view. We analytically evaluate the correctness of the results by measuring the distance between features on the registered colons. PMID:20975175

  6. Rice Crop Mapping Using SENTINEL-1A Phenological Metrics

    NASA Astrophysics Data System (ADS)

    Chen, C. F.; Son, N. T.; Chen, C. R.; Chang, L. Y.; Chiang, S. H.

    2016-06-01

    Rice is the most important food crop in Vietnam, providing food more than 90 million people and is considered as an essential source of income for majority of rural populations. Monitoring rice-growing areas is thus important to developing successful strategies for food security in the country. This paper aims to develop an approach for crop acreage estimation from multi-temporal Sentinel-1A data. We processed the data for two main cropping seasons (e.g., winter-spring, summer-autumn) in the Mekong River Delta (MRD), Vietnam through three main steps: (1) data pre-processing, (3) rice classification based on crop phenological metrics, and (4) accuracy assessment of the mapping results. The classification results compared with the ground reference data indicated the overall accuracy of 86.2% and Kappa coefficient of 0.72. These results were reaffirmed by close correlation between the government's rice area statistics for such crops (R2 > 0.95). The values of relative error in area obtained for the winter-spring and summer-autumn were -3.6% and 6.7%, respectively. This study demonstrates the potential application of multi-temporal Sentinel-1A data for rice crop mapping using information of crop phenology in the study region.

  7. A stochastic approach to estimate the uncertainty of dose mapping caused by uncertainties in b-spline registration

    SciTech Connect

    Hub, Martina; Thieke, Christian; Kessler, Marc L.; Karger, Christian P.

    2012-04-15

    Purpose: In fractionated radiation therapy, image guidance with daily tomographic imaging becomes more and more clinical routine. In principle, this allows for daily computation of the delivered dose and for accumulation of these daily dose distributions to determine the actually delivered total dose to the patient. However, uncertainties in the mapping of the images can translate into errors of the accumulated total dose, depending on the dose gradient. In this work, an approach to estimate the uncertainty of mapping between medical images is proposed that identifies areas bearing a significant risk of inaccurate dose accumulation. Methods: This method accounts for the geometric uncertainty of image registration and the heterogeneity of the dose distribution, which is to be mapped. Its performance is demonstrated in context of dose mapping based on b-spline registration. It is based on evaluation of the sensitivity of dose mapping to variations of the b-spline coefficients combined with evaluation of the sensitivity of the registration metric with respect to the variations of the coefficients. It was evaluated based on patient data that was deformed based on a breathing model, where the ground truth of the deformation, and hence the actual true dose mapping error, is known. Results: The proposed approach has the potential to distinguish areas of the image where dose mapping is likely to be accurate from other areas of the same image, where a larger uncertainty must be expected. Conclusions: An approach to identify areas where dose mapping is likely to be inaccurate was developed and implemented. This method was tested for dose mapping, but it may be applied in context of other mapping tasks as well.

  8. Registration of heat capacity mapping mission day and night images

    NASA Technical Reports Server (NTRS)

    Watson, K.; Hummer-Miller, S.; Sawatzky, D. L.

    1982-01-01

    Registration of thermal images is complicated by distinctive differences in the appearance of day and night features needed as control in the registration process. These changes are unlike those that occur between Landsat scenes and pose unique constraints. Experimentation with several potentially promising techniques has led to selection of a fairly simple scheme for registration of data from the experimental thermal satellite HCMM using an affine transformation. Two registration examples are provided.

  9. Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging

    PubMed Central

    Ceritoglu, Can; Oishi, Kenichi; Li, Xin; Chou, Ming-Chung; Younes, Laurent; Albert, Marilyn; Lyketsos, Constantine; van Zijl, Peter C.M.; Miller, Michael I.; Mori, Susumu

    2010-01-01

    Diffusion tensor imaging (DTI) can reveal detailed white matter anatomy and has the potential to detect abnormalities in specific white matter structures. Such detection and quantification are, however, not straightforward. The voxel-based analysis after image normalization is one of the most widely used methods for quantitative image analyses. To apply this approach to DTI, it is important to examine if structures in the white matter are well registered among subjects, which would be highly dependent on employed algorithms for normalization. In this paper, we evaluate the accuracy of normalization of DTI data using a highly elastic transformation algorithm, called large deformation diffeomorphic metric mapping. After simulation-based validation of the algorithm, DTI data from normal subjects were used to measure the registration accuracy. To examine the impact of morphological abnormalities on the accuracy, the algorithm was also tested using data from Alzheimer’s disease (AD) patients with severe brain atrophy. The accuracy level was measured by using manual landmark-based white matter matching and surface-based brain and ventricle matching as gold standard. To improve the accuracy level, cascading and multi-contrast approaches were developed. The accuracy level for the white matter was 1.88 ± 0.55 and 2.19 ± 0.84 mm for the measured locations in the controls and patients, respectively. PMID:19398016

  10. Digital image registration method based upon binary boundary maps

    NASA Technical Reports Server (NTRS)

    Jayroe, R. R., Jr.; Andrus, J. F.; Campbell, C. W.

    1974-01-01

    A relatively fast method is presented for matching or registering the digital data of imagery from the same ground scene acquired at different times, or from different multispectral images, sensors, or both. It is assumed that the digital images can be registed by using translations and rotations only, that the images are of the same scale, and that little or no distortion exists between images. It is further assumed that by working with several local areas of the image, the rotational effects in the local areas can be neglected. Thus, by treating the misalignments of local areas as translations, it is possible to determine rotational and translational misalignments for a larger portion of the image containing the local areas. This procedure of determining the misalignment and then registering the data according to the misalignment can be repeated until the desired degree of registration is achieved. The method to be presented is based upon the use of binary boundary maps produced from the raw digital imagery rather than the raw digital data.

  11. TU-A-19A-01: Image Registration I: Deformable Image Registration, Contour Propagation and Dose Mapping: 101 and 201

    SciTech Connect

    Kessler, M

    2014-06-15

    Deformable image registration, contour propagation and dose mapping have become common, possibly essential tools for modern image-guided radiation therapy. Historically, these tools have been largely developed at academic medical centers and used in a rather limited and well controlled fashion. Today these tools are now available to the radiotherapy community at large, both as stand-alone applications and as integrated components of both treatment planning and treatment delivery systems. Unfortunately, the details of how these tools work and their limitations are not generally documented or described by the vendors that provide them. Although “it looks right”, determining that unphysical deformations may have occurred is crucial. Because of this, understanding how and when to use, and not use these tools to support everyday clinical decisions is far from straight forward. The goal of this session will be to present both the theory (basic and advanced) and practical clinical use of deformable image registration, contour propagation and dose mapping. To the extent possible, the “secret sauce” that different vendor use to produce reasonable/acceptable results will be described. A detailed explanation of the possible sources of errors and actual examples of these will be presented. Knowing the underlying principles of the process and understanding the confounding factors will help the practicing medical physicist be better able to make decisions (about making decisions) using these tools available. Learning Objectives: Understand the basic (101) and advanced (201) principles of deformable image registration, contour propagation and dose mapping data mapping. Understand the sources and impact of errors in registration and data mapping and the methods for evaluating the performance of these tools. Understand the clinical use and value of these tools, especially when used as a “black box”.

  12. A method to estimate the effect of deformable image registration uncertainties on daily dose mapping

    SciTech Connect

    Murphy, Martin J.; Salguero, Francisco J.; Siebers, Jeffrey V.; Staub, David; Vaman, Constantin

    2012-02-15

    Purpose: To develop a statistical sampling procedure for spatially-correlated uncertainties in deformable image registration and then use it to demonstrate their effect on daily dose mapping. Methods: Sequential daily CT studies are acquired to map anatomical variations prior to fractionated external beam radiotherapy. The CTs are deformably registered to the planning CT to obtain displacement vector fields (DVFs). The DVFs are used to accumulate the dose delivered each day onto the planning CT. Each DVF has spatially-correlated uncertainties associated with it. Principal components analysis (PCA) is applied to measured DVF error maps to produce decorrelated principal component modes of the errors. The modes are sampled independently and reconstructed to produce synthetic registration error maps. The synthetic error maps are convolved with dose mapped via deformable registration to model the resulting uncertainty in the dose mapping. The results are compared to the dose mapping uncertainty that would result from uncorrelated DVF errors that vary randomly from voxel to voxel. Results: The error sampling method is shown to produce synthetic DVF error maps that are statistically indistinguishable from the observed error maps. Spatially-correlated DVF uncertainties modeled by our procedure produce patterns of dose mapping error that are different from that due to randomly distributed uncertainties. Conclusions: Deformable image registration uncertainties have complex spatial distributions. The authors have developed and tested a method to decorrelate the spatial uncertainties and make statistical samples of highly correlated error maps. The sample error maps can be used to investigate the effect of DVF uncertainties on daily dose mapping via deformable image registration. An initial demonstration of this methodology shows that dose mapping uncertainties can be sensitive to spatial patterns in the DVF uncertainties.

  13. Two Phase Non-Rigid Multi-Modal Image Registration Using Weber Local Descriptor-Based Similarity Metrics and Normalized Mutual Information

    PubMed Central

    Yang, Feng; Ding, Mingyue; Zhang, Xuming; Wu, Yi; Hu, Jiani

    2013-01-01

    Non-rigid multi-modal image registration plays an important role in medical image processing and analysis. Existing image registration methods based on similarity metrics such as mutual information (MI) and sum of squared differences (SSD) cannot achieve either high registration accuracy or high registration efficiency. To address this problem, we propose a novel two phase non-rigid multi-modal image registration method by combining Weber local descriptor (WLD) based similarity metrics with the normalized mutual information (NMI) using the diffeomorphic free-form deformation (FFD) model. The first phase aims at recovering the large deformation component using the WLD based non-local SSD (wldNSSD) or weighted structural similarity (wldWSSIM). Based on the output of the former phase, the second phase is focused on getting accurate transformation parameters related to the small deformation using the NMI. Extensive experiments on T1, T2 and PD weighted MR images demonstrate that the proposed wldNSSD-NMI or wldWSSIM-NMI method outperforms the registration methods based on the NMI, the conditional mutual information (CMI), the SSD on entropy images (ESSD) and the ESSD-NMI in terms of registration accuracy and computation efficiency. PMID:23765270

  14. Metrics, Bayes, and BOGSAT: Recognizing and Assessing Uncertainties in Earthquake Hazard Maps

    NASA Astrophysics Data System (ADS)

    Stein, S. A.; Brooks, E. M.; Spencer, B. D.

    2015-12-01

    Recent damaging earthquakes in areas predicted to be relatively safe illustrate the need to assess how seismic hazard maps perform. At present, there is no agreed way of assessing how well a map performed. The metric implicit in current maps, that during a time interval predicted shaking will be exceeded only at a specific fraction of sites, is useful but permits maps to be nominally successful although they significantly underpredict or overpredict shaking, or nominally unsuccessful but predict shaking well. We explore metrics that measure the effects of overprediction and underprediction. Although no single metric fully characterizes map behavior, using several metrics can provide useful insight for comparing and improving maps. A related question is whether to regard larger-than-expected shaking as a low-probability event allowed by a map, or to revise the map to show increased hazard. Whether and how much to revise a map is complicated, because a new map that better describes the past may or may not better predict the future. The issue is like deciding after a coin has come up heads a number of times whether to continue assuming that the coin is fair and the run is a low-probability event, or to change to a model in which the coin is assumed to be biased. This decision can be addressed using Bayes' Rule, so that how much to change depends on the degree of one's belief in the prior model. Uncertainties are difficult to assess for hazard maps, which require subjective assessments and choices among many poorly known or unknown parameters. However, even rough uncertainty measures for estimates/predictions from such models, sometimes termed BOGSATs (Bunch Of Guys Sitting Around Table) by risk analysts, can give users useful information to make better decisions. We explore the extent of uncertainty via sensitivity experiments on how the predicted hazard depends on model parameters.

  15. 3D-2D image registration for target localization in spine surgery: investigation of similarity metrics providing robustness to content mismatch.

    PubMed

    De Silva, T; Uneri, A; Ketcha, M D; Reaungamornrat, S; Kleinszig, G; Vogt, S; Aygun, N; Lo, S-F; Wolinsky, J-P; Siewerdsen, J H

    2016-04-21

    In image-guided spine surgery, robust three-dimensional to two-dimensional (3D-2D) registration of preoperative computed tomography (CT) and intraoperative radiographs can be challenged by the image content mismatch associated with the presence of surgical instrumentation and implants as well as soft-tissue resection or deformation. This work investigates image similarity metrics in 3D-2D registration offering improved robustness against mismatch, thereby improving performance and reducing or eliminating the need for manual masking. The performance of four gradient-based image similarity metrics (gradient information (GI), gradient correlation (GC), gradient information with linear scaling (GS), and gradient orientation (GO)) with a multi-start optimization strategy was evaluated in an institutional review board-approved retrospective clinical study using 51 preoperative CT images and 115 intraoperative mobile radiographs. Registrations were tested with and without polygonal masks as a function of the number of multistarts employed during optimization. Registration accuracy was evaluated in terms of the projection distance error (PDE) and assessment of failure modes (PDE  >  30 mm) that could impede reliable vertebral level localization. With manual polygonal masking and 200 multistarts, the GC and GO metrics exhibited robust performance with 0% gross failures and median PDE  <  6.4 mm (±4.4 mm interquartile range (IQR)) and a median runtime of 84 s (plus upwards of 1-2 min for manual masking). Excluding manual polygonal masks and decreasing the number of multistarts to 50 caused the GC-based registration to fail at a rate of  >14%; however, GO maintained robustness with a 0% gross failure rate. Overall, the GI, GC, and GS metrics were susceptible to registration errors associated with content mismatch, but GO provided robust registration (median PDE  =  5.5 mm, 2.6 mm IQR) without manual masking and with an improved

  16. 3D-2D image registration for target localization in spine surgery: investigation of similarity metrics providing robustness to content mismatch

    NASA Astrophysics Data System (ADS)

    De Silva, T.; Uneri, A.; Ketcha, M. D.; Reaungamornrat, S.; Kleinszig, G.; Vogt, S.; Aygun, N.; Lo, S.-F.; Wolinsky, J.-P.; Siewerdsen, J. H.

    2016-04-01

    In image-guided spine surgery, robust three-dimensional to two-dimensional (3D-2D) registration of preoperative computed tomography (CT) and intraoperative radiographs can be challenged by the image content mismatch associated with the presence of surgical instrumentation and implants as well as soft-tissue resection or deformation. This work investigates image similarity metrics in 3D-2D registration offering improved robustness against mismatch, thereby improving performance and reducing or eliminating the need for manual masking. The performance of four gradient-based image similarity metrics (gradient information (GI), gradient correlation (GC), gradient information with linear scaling (GS), and gradient orientation (GO)) with a multi-start optimization strategy was evaluated in an institutional review board-approved retrospective clinical study using 51 preoperative CT images and 115 intraoperative mobile radiographs. Registrations were tested with and without polygonal masks as a function of the number of multistarts employed during optimization. Registration accuracy was evaluated in terms of the projection distance error (PDE) and assessment of failure modes (PDE  >  30 mm) that could impede reliable vertebral level localization. With manual polygonal masking and 200 multistarts, the GC and GO metrics exhibited robust performance with 0% gross failures and median PDE  <  6.4 mm (±4.4 mm interquartile range (IQR)) and a median runtime of 84 s (plus upwards of 1-2 min for manual masking). Excluding manual polygonal masks and decreasing the number of multistarts to 50 caused the GC-based registration to fail at a rate of  >14% however, GO maintained robustness with a 0% gross failure rate. Overall, the GI, GC, and GS metrics were susceptible to registration errors associated with content mismatch, but GO provided robust registration (median PDE  =  5.5 mm, 2.6 mm IQR) without manual masking and with an improved

  17. 3D–2D image registration for target localization in spine surgery: investigation of similarity metrics providing robustness to content mismatch

    PubMed Central

    De Silva, T; Uneri, A; Ketcha, M D; Reaungamornrat, S; Kleinszig, G; Vogt, S; Aygun, N; Lo, S-F; Wolinsky, J-P; Siewerdsen, J H

    2016-01-01

    In image-guided spine surgery, robust three-dimensional to two-dimensional (3D–2D) registration of preoperative computed tomography (CT) and intraoperative radiographs can be challenged by the image content mismatch associated with the presence of surgical instrumentation and implants as well as soft-tissue resection or deformation. This work investigates image similarity metrics in 3D–2D registration offering improved robustness against mismatch, thereby improving performance and reducing or eliminating the need for manual masking. The performance of four gradient-based image similarity metrics (gradient information (GI), gradient correlation (GC), gradient information with linear scaling (GS), and gradient orientation (GO)) with a multi-start optimization strategy was evaluated in an institutional review board-approved retrospective clinical study using 51 preoperative CT images and 115 intraoperative mobile radiographs. Registrations were tested with and without polygonal masks as a function of the number of multistarts employed during optimization. Registration accuracy was evaluated in terms of the projection distance error (PDE) and assessment of failure modes (PDE > 30 mm) that could impede reliable vertebral level localization. With manual polygonal masking and 200 multistarts, the GC and GO metrics exhibited robust performance with 0% gross failures and median PDE < 6.4 mm (±4.4 mm interquartile range (IQR)) and a median runtime of 84 s (plus upwards of 1–2 min for manual masking). Excluding manual polygonal masks and decreasing the number of multistarts to 50 caused the GC-based registration to fail at a rate of >14%; however, GO maintained robustness with a 0% gross failure rate. Overall, the GI, GC, and GS metrics were susceptible to registration errors associated with content mismatch, but GO provided robust registration (median PDE = 5.5 mm, 2.6 mm IQR) without manual masking and with an improved runtime (29.3 s). The GO metric improved the

  18. Fully automated prostate magnetic resonance imaging and transrectal ultrasound fusion via a probabilistic registration metric

    NASA Astrophysics Data System (ADS)

    Sparks, Rachel; Bloch, B. Nicholas; Feleppa, Ernest; Barratt, Dean; Madabhushi, Anant

    2013-03-01

    In this work, we present a novel, automated, registration method to fuse magnetic resonance imaging (MRI) and transrectal ultrasound (TRUS) images of the prostate. Our methodology consists of: (1) delineating the prostate on MRI, (2) building a probabilistic model of prostate location on TRUS, and (3) aligning the MRI prostate segmentation to the TRUS probabilistic model. TRUS-guided needle biopsy is the current gold standard for prostate cancer (CaP) diagnosis. Up to 40% of CaP lesions appear isoechoic on TRUS, hence TRUS-guided biopsy cannot reliably target CaP lesions and is associated with a high false negative rate. MRI is better able to distinguish CaP from benign prostatic tissue, but requires special equipment and training. MRI-TRUS fusion, whereby MRI is acquired pre-operatively and aligned to TRUS during the biopsy procedure, allows for information from both modalities to be used to help guide the biopsy. The use of MRI and TRUS in combination to guide biopsy at least doubles the yield of positive biopsies. Previous work on MRI-TRUS fusion has involved aligning manually determined fiducials or prostate surfaces to achieve image registration. The accuracy of these methods is dependent on the reader's ability to determine fiducials or prostate surfaces with minimal error, which is a difficult and time-consuming task. Our novel, fully automated MRI-TRUS fusion method represents a significant advance over the current state-of-the-art because it does not require manual intervention after TRUS acquisition. All necessary preprocessing steps (i.e. delineation of the prostate on MRI) can be performed offline prior to the biopsy procedure. We evaluated our method on seven patient studies, with B-mode TRUS and a 1.5 T surface coil MRI. Our method has a root mean square error (RMSE) for expertly selected fiducials (consisting of the urethra, calcifications, and the centroids of CaP nodules) of 3.39 +/- 0.85 mm.

  19. Using phenological metrics and the multiple classifier fusion method to map land cover types

    NASA Astrophysics Data System (ADS)

    Liu, Jianhong; Pan, Yaozhong; Zhu, Xiufang; Zhu, Wenquan

    2014-01-01

    Feature selection and multiple classifier fusion (MCF) are effective approaches to improve land cover classification accuracy. In this study, we combined phenological metrics and the MCF method to map land cover types in Jiangsu province of China during the second crop growing season using moderate resolution imaging spectroradiometer time-series data. Eight phenological metrics were developed and calculated, and a MCF scheme was proposed by combining a simple majority vote and the measurement of posterior probabilities. The four base classifiers (i.e., the maximum likelihood classifier, the Mahalanobis distance classifier, the support vector machine classifier, and the neural networks classifier) and the MCF method were used in classifications using two spectral indices from the original satellite data (direct classification) and the computed metric data (metrics-based classification). Accuracy assessments indicated that the overall accuracies and kappa coefficients of the metrics-based classifications were all higher than those of direct classifications. The average overall accuracy and kappa coefficient of metrics-based classifications were 8.36% and 0.1 higher than that of direct classifications, respectively. Similarly, the overall accuracy and kappa coefficient of MCF generally were close to or exceeded the highest accuracy among all the base classifiers. The highest overall accuracy and kappa coefficient was achieved by classification with the MCF method based on phenological metrics (m-MCF), which were 88% and 0.85, respectively. Our results suggested that combining phenological metrics and MCF in classification is a promising method for land cover mapping in regions where strong phenological signals can be detected.

  20. Computed tomography lung iodine contrast mapping by image registration and subtraction

    NASA Astrophysics Data System (ADS)

    Goatman, Keith; Plakas, Costas; Schuijf, Joanne; Beveridge, Erin; Prokop, Mathias

    2014-03-01

    Pulmonary embolism (PE) is a relatively common and potentially life threatening disease, affecting around 600,000 people annually in the United States alone. Prompt treatment using anticoagulants is effective and saves lives, but unnecessary treatment risks life threatening haemorrhage. The specificity of any diagnostic test for PE is therefore as important as its sensitivity. Computed tomography (CT) angiography is routinely used to diagnose PE. However, there are concerns it may over-report the condition. Additional information about the severity of an occlusion can be obtained from an iodine contrast map that represents tissue perfusion. Such maps tend to be derived from dual-energy CT acquisitions. However, they may also be calculated by subtracting pre- and post-contrast CT scans. Indeed, there are technical advantages to such a subtraction approach, including better contrast-to-noise ratio for the same radiation dose, and bone suppression. However, subtraction relies on accurate image registration. This paper presents a framework for the automatic alignment of pre- and post-contrast lung volumes prior to subtraction. The registration accuracy is evaluated for seven subjects for whom pre- and post-contrast helical CT scans were acquired using a Toshiba Aquilion ONE scanner. One hundred corresponding points were annotated on the pre- and post-contrast scans, distributed throughout the lung volume. Surface-to-surface error distances were also calculated from lung segmentations. Prior to registration the mean Euclidean landmark alignment error was 2.57mm (range 1.43-4.34 mm), and following registration the mean error was 0.54mm (range 0.44-0.64 mm). The mean surface error distance was 1.89mm before registration and 0.47mm after registration. There was a commensurate reduction in visual artefacts following registration. In conclusion, a framework for pre- and post-contrast lung registration has been developed that is sufficiently accurate for lung subtraction

  1. Comparison of optimization strategy and similarity metric in atlas-to-subject registration using statistical deformation model

    NASA Astrophysics Data System (ADS)

    Otake, Y.; Murphy, R. J.; Grupp, R. B.; Sato, Y.; Taylor, R. H.; Armand, M.

    2015-03-01

    A robust atlas-to-subject registration using a statistical deformation model (SDM) is presented. The SDM uses statistics of voxel-wise displacement learned from pre-computed deformation vectors of a training dataset. This allows an atlas instance to be directly translated into an intensity volume and compared with a patient's intensity volume. Rigid and nonrigid transformation parameters were simultaneously optimized via the Covariance Matrix Adaptation - Evolutionary Strategy (CMA-ES), with image similarity used as the objective function. The algorithm was tested on CT volumes of the pelvis from 55 female subjects. A performance comparison of the CMA-ES and Nelder-Mead downhill simplex optimization algorithms with the mutual information and normalized cross correlation similarity metrics was conducted. Simulation studies using synthetic subjects were performed, as well as leave-one-out cross validation studies. Both studies suggested that mutual information and CMA-ES achieved the best performance. The leave-one-out test demonstrated 4.13 mm error with respect to the true displacement field, and 26,102 function evaluations in 180 seconds, on average.

  2. Characterising the metric and topological evolution of OpenStreetMap network representations

    NASA Astrophysics Data System (ADS)

    Corcoran, Padraig; Mooney, Peter

    2013-01-01

    OpenStreetMap (OSM) is a collaborative project to create a free editable map database of the world. This paper presents an analysis of the evolution of OSM street network representations. Three urban areas in Ireland were analysed where each evolves from containing little street network detail to a highly detailed street network. In order to characterise this evolution a number of metric and topological characteristics were computed. Some characteristics exhibited broadly similar behaviour in each region. This may be a attributed to similarities in the degree of contributor activity and intrinsic universal mapping procedures exhibited by contributors.

  3. Fiber feature map based landmark initialization for highly deformable DTI registration

    PubMed Central

    Gupta, Aditya; Toews, Matthew; Janardhana, Ravikiran; Rathi, Yogesh; Gilmore, John; Escolar, Maria; Styner, Martin

    2013-01-01

    This paper presents a novel pipeline for the registration of diffusion tensor images (DTI) with large pathological variations to normal controls based on the use of a novel feature map derived from white matter (WM) fiber tracts. The research presented aims towards an atlas based DTI analysis of subjects with considerable brain pathologies such as tumors or hydrocephalus. In this paper, we propose a novel feature map that is robust against variations in WM fiber tract integrity and use these feature maps to determine a landmark correspondence using a 3D point correspondence algorithm. This correspondence drives a deformation field computed using Gaussian radial basis functions(RBF). This field is employed as an initialization to a standard deformable registration method like demons. We present early preliminary results on the registration of a normal control dataset to a dataset with abnormally enlarged lateral ventricles affected by fatal demyelinating Krabbe disease. The results are analyzed based on a regional tensor matching criterion and a visual assessment of overlap of major WM fiber tracts. While further evaluation and improvements are necessary, the results presented in this paper highlight the potential of our method in handling registration of subjects with severe WM pathology. PMID:24353392

  4. Automatic registration of aerial photographs and digitized maps

    NASA Astrophysics Data System (ADS)

    Li, S. Z.; Kittler, Josef; Petrou, Maria

    1993-06-01

    We have developed a method of matching and recognizing aerial road network images based on road network models. The input is a list of line segments of an image obtained from a preprocessing stage, which is usually fragmentary and contains extraneous noisy segments. The output is the correspondences between the image line segments and model line segments. We use attributed relational graphs (ARG) to describe images and models. An ARG consists of a set of nodes, each node representing a line segment, and attributed relations between nodes. The task of matching is to find the best correspondences between the image ARG and the model ARG. The correspondences are found using a relaxation labeling algorithm, which optimizes a criterion of similarity. The algorithm is capable of subgraph matching of an image road structure to a map road model covering an area 10 times larger than the area imaged by the sensor, provided that the image distortion due to perspective imaging geometry has been corrected during preprocessing stages. We present matching experiments and demonstrate the stability of the matching method to extraneous line segments, missing line segments, and errors in scaling.

  5. Deformable image registration and 3D strain mapping for the quantitative assessment of cortical bone microdamage.

    PubMed

    Christen, David; Levchuk, Alina; Schori, Stefan; Schneider, Philipp; Boyd, Steven K; Müller, Ralph

    2012-04-01

    The resistance to forming microcracks is a key factor for bone to withstand critical loads without fracturing. In this study, we investigated the initiation and propagation of microcracks in murine cortical bone by combining three-dimensional images from synchrotron radiation-based computed tomography and time-lapsed biomechanical testing to observe microdamage accumulation over time. Furthermore, a novel deformable image registration procedure utilizing digital volume correlation and demons image registration was introduced to compute 3D strain maps allowing characterization of the mechanical environment of the microcracks. The displacement and strain maps were validated in a priori tests. At an image resolution of 740 nm the spatial resolution of the strain maps was 10 μm (MTF), while the errors of the displacements and strains were 130 nm and 0.013, respectively. The strain maps revealed a complex interaction of the propagating microcracks with the bone microstructure. In particular, we could show that osteocyte lacunae play a dual role as stress concentrating features reducing bone strength, while at the same time contributing to the bone toughness by blunting the crack tip. We conclude that time-lapsed biomechanical imaging in combination with three-dimensional strain mapping is suitable for the investigation of crack initiation and propagation in many porous materials under various loading scenarios. PMID:22402165

  6. An intervarietal genetic linkage map of Indian bread wheat (Triticum aestivum L.) and QTL maps for some metric traits.

    PubMed

    Nalini, E; Bhagwat, S G; Jawali, N

    2007-06-01

    Bread wheat (Triticum aestivum L.) exhibits very narrow genetic diversity and hence there is high relatedness among cultivated varieties. However, a population generated from an intervarietal cross, with the parents differing in a large number of traits, could lead to the generation of QTL maps which will be useful in practice. In this report a genetic linkage map of wheat is constructed using a cross between two Indian bread wheat varieties: Sonalika and Kalyansona. The linkage map consisted of 236 markers and spanned a distance of 3639 cM, with 1211.2 cM for the A genome, 1669.2 cM for the B genome, 192.4 cM for the D genome and 566.2 cM for unassigned groups. Linkage analysis defined 37 linkage groups of which 24 were assigned to 17 chromosomes. The genetic map was used to identify QTLs by composite internal mapping (CIM) for three metric traits, viz. culm length (CL), flag leaf length (FLL) and flag leaf breadth (FLB). Of 25 QTLs identified in this study, 15 have not been reported previously. Multitrait CIM (MCIM) analysis was carried out for traits that were significantly correlated such as FLB-FLL and CL-FLB-FLL. Detection of a large number of QTLs for the three traits analysed suggests that in parent cultivars that are not too diverse, the differences at genetic level detected as polymorphisms may be mostly associated with QTLs for the observed differences. PMID:17894910

  7. Image Registration for Quantitative Parametric Response Mapping of Cancer Treatment Response1

    PubMed Central

    Boes, Jennifer L; Hoff, Benjamin A; Hylton, Nola; Pickles, Martin D; Turnbull, Lindsay W; Schott, Anne F; Rehemtulla, Alnawaz; Chamberlain, Ryan; Lemasson, Benjamin; Chenevert, Thomas L; Galbán, Craig J; Meyer, Charles R; Ross, Brian D

    2014-01-01

    Imaging biomarkers capable of early quantification of tumor response to therapy would provide an opportunity to individualize patient care. Image registration of longitudinal scans provides a method of detecting treatment associated changes within heterogeneous tumors by monitoring alterations in the quantitative value of individual voxels over time, which is unattainable by traditional volumetric-based histogram methods. The concepts involved in the use of image registration for tracking and quantifying breast cancer treatment response using parametric response mapping (PRM), a voxel-based analysis of diffusion-weighted magnetic resonance imaging (DW-MRI) scans, are presented. Application of PRM to breast tumor response detection is described, wherein robust registration solutions for tracking small changes in water diffusivity in breast tumors during therapy are required. Methodologies that employ simulations are presented for measuring expected statistical accuracy of PRM for response assessment. Test-retest clinical scans are used to yield estimates of system noise to indicate significant changes in voxel-based changes in water diffusivity. Overall, registration-based PRM image analysis provides significant opportunities for voxel-based image analysis to provide the required accuracy for early assessment of response to treatment in breast cancer patients receiving neoadjuvant chemotherapy. PMID:24772213

  8. Three-dimensional quantitative assessment of ablation margins based on registration of pre- and post-procedural MRI and distance map

    PubMed Central

    Tani, Soichiro; Tatli, Servet; Hata, Nobuhiko; Garcia-Rojas, Xavier; Olubiyi, Olutayo I.; Silverman, Stuart G.; Tokuda, Junichi

    2016-01-01

    Purpose Contrast-enhanced MR images are widely used to confirm the adequacy of ablation margin after liver ablation for early prediction of local recurrence. However, quantitative assessment of the ablation margin by comparing pre- and post-procedural images remains challenging. We developed and tested a novel method for three-dimensional quantitative assessment of ablation margin based on non-rigid image registration and 3D distance map. Methods Our method was tested with pre- and post-procedural MR images acquired in 21 patients who underwent image-guided percutaneous liver ablation. The two images were co-registered using non-rigid intensity-based registration. After the tumor and ablation volumes were segmented, target volume coverage, percent of tumor coverage, and Dice Similarity Coefficient were calculated as metrics representing overall adequacy of ablation. In addition, 3D distance map around the tumor was computed and superimposed on the ablation volume to identify the area with insufficient margins. For patients with local recurrences, the follow-up images were registered to the post-procedural image. Three-D minimum distance between the recurrence and the areas with insufficient margins were quantified. Results The percent tumor coverage for all non-recurrent cases was 100%. Five cases had tumor recurrences, and the 3D distance map revealed insufficient tumor coverage or a 0-millimeter margin. It also showed that two recurrences were remote to the insufficient margin. Conclusions Non-rigid registration and 3D distance map allows us to quantitatively evaluate the adequacy of the ablation margin after percutaneous liver ablation. The method may be useful to predict local recurrences immediately following ablation procedure. PMID:27038962

  9. Comparison of interferometric and stereo-radargrammetric 3D metrics in mapping of forest resources

    NASA Astrophysics Data System (ADS)

    Karila, K.; Karjalainen, M.; Yu, X.; Vastaranta, M.; Holopainen, M.; Hyyppa, J.

    2015-04-01

    Accurate forest resources maps are needed in diverse applications ranging from the local forest management to the global climate change research. In particular, it is important to have tools to map changes in forest resources, which helps us to understand the significance of the forest biomass changes in the global carbon cycle. In the task of mapping changes in forest resources for wide areas, Earth Observing satellites could play the key role. In 2013, an EU/FP7-Space funded project "Advanced_SAR" was started with the main objective to develop novel forest resources mapping methods based on the fusion of satellite based 3D measurements and in-situ field measurements of forests. During the summer 2014, an extensive field surveying campaign was carried out in the Evo test site, Southern Finland. Forest inventory attributes of mean tree height, basal area, mean stem diameter, stem volume, and biomass, were determined for 91 test plots having the size of 32 by 32 meters (1024 m2). Simultaneously, a comprehensive set of satellite and airborne data was collected. Satellite data also included a set of TanDEM-X (TDX) and TerraSAR-X (TSX) X-band synthetic aperture radar (SAR) images, suitable for interferometric and stereo-radargrammetric processing to extract 3D elevation data representing the forest canopy. In the present study, we compared the accuracy of TDX InSAR and TSX stereo-radargrammetric derived 3D metrics in forest inventory attribute prediction. First, 3D data were extracted from TDX and TSX images. Then, 3D data were processed as elevations above the ground surface (forest canopy height values) using an accurate Digital Terrain Model (DTM) based on airborne laser scanning survey. Finally, 3D metrics were calculated from the canopy height values for each test plot and the 3D metrics were compared with the field reference data. The Random Forest method was used in the forest inventory attributes prediction. Based on the results InSAR showed slightly better

  10. Automatic ultrasound-MRI registration for neurosurgery using the 2D and 3D LC(2) Metric.

    PubMed

    Fuerst, Bernhard; Wein, Wolfgang; Müller, Markus; Navab, Nassir

    2014-12-01

    To enable image guided neurosurgery, the alignment of pre-interventional magnetic resonance imaging (MRI) and intra-operative ultrasound (US) is commonly required. We present two automatic image registration algorithms using the similarity measure Linear Correlation of Linear Combination (LC(2)) to align either freehand US slices or US volumes with MRI images. Both approaches allow an automatic and robust registration, while the three dimensional method yields a significantly improved percentage of optimally aligned registrations for randomly chosen clinically relevant initializations. This study presents a detailed description of the methodology and an extensive evaluation showing an accuracy of 2.51mm, precision of 0.85mm and capture range of 15mm (>95% convergence) using 14 clinical neurosurgical cases. PMID:24842859

  11. SU-F-BRF-08: Conformal Mapping-Based 3D Surface Matching and Registration

    SciTech Connect

    Song, Y; Zeng, W; Gu, X; Liu, C

    2014-06-15

    Purpose: Recently, non-rigid 3D surface matching and registration has been used extensively in engineering and medicine. However, matching 3D surfaces undergoing non-rigid deformation accurately is still a challenging mathematical problem. In this study, we present a novel algorithm to address this issue by introducing intrinsic symmetry to the registration Methods: Our computational algorithm for symmetric conformal mapping is divided into three major steps: 1) Finding the symmetric plane; 2) Finding feature points; and 3) Performing cross registration. The key strategy is to preserve the symmetry during the conformal mapping, such that the image on the parameter domain is symmetric and the area distortion factor on the parameter image is also symmetric. Several novel algorithms were developed using different conformal geometric tools. One was based on solving Riemann-Cauchy equation and the other one employed curvature flow Results: Our algorithm was implemented using generic C++ on Windows XP and used conjugate gradient search optimization for acceleration. The human face 3D surface images were acquired using a high speed 3D scanner based on the phase-shifting method. The scanning speed was 30 frames/sec. The image resolution for each frame was 640 × 480. For 3D human face surfaces with different expressions, postures, and boundaries, our algorithms were able to produce consistent result on the texture pattern on the overlapping region Conclusion: We proposed a novel algorithm to improve the robustness of conformal geometric methods by incorporating the symmetric information into the mapping process. To objectively evaluate its performance, we compared it with most existing techniques. Experimental results indicated that our method outperformed all the others in terms of robustness. The technique has a great potential in real-time patient monitoring and tracking in image-guided radiation therapy.

  12. aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data.

    PubMed

    Niedworok, Christian J; Brown, Alexander P Y; Jorge Cardoso, M; Osten, Pavel; Ourselin, Sebastien; Modat, Marc; Margrie, Troy W

    2016-01-01

    The validation of automated image registration and segmentation is crucial for accurate and reliable mapping of brain connectivity and function in three-dimensional (3D) data sets. While validation standards are necessarily high and routinely met in the clinical arena, they have to date been lacking for high-resolution microscopy data sets obtained from the rodent brain. Here we present a tool for optimized automated mouse atlas propagation (aMAP) based on clinical registration software (NiftyReg) for anatomical segmentation of high-resolution 3D fluorescence images of the adult mouse brain. We empirically evaluate aMAP as a method for registration and subsequent segmentation by validating it against the performance of expert human raters. This study therefore establishes a benchmark standard for mapping the molecular function and cellular connectivity of the rodent brain. PMID:27384127

  13. aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

    PubMed Central

    Niedworok, Christian J.; Brown, Alexander P. Y.; Jorge Cardoso, M.; Osten, Pavel; Ourselin, Sebastien; Modat, Marc; Margrie, Troy W.

    2016-01-01

    The validation of automated image registration and segmentation is crucial for accurate and reliable mapping of brain connectivity and function in three-dimensional (3D) data sets. While validation standards are necessarily high and routinely met in the clinical arena, they have to date been lacking for high-resolution microscopy data sets obtained from the rodent brain. Here we present a tool for optimized automated mouse atlas propagation (aMAP) based on clinical registration software (NiftyReg) for anatomical segmentation of high-resolution 3D fluorescence images of the adult mouse brain. We empirically evaluate aMAP as a method for registration and subsequent segmentation by validating it against the performance of expert human raters. This study therefore establishes a benchmark standard for mapping the molecular function and cellular connectivity of the rodent brain. PMID:27384127

  14. Thoracic non-rigid registration combining self-organizing maps and radial basis functions.

    PubMed

    Matsopoulos, George K; Mouravliansky, Nikolaos A; Asvestas, Pantelis A; Delibasis, Konstantinos K; Kouloulias, Vassilis

    2005-06-01

    An automatic three-dimensional non-rigid registration scheme is proposed in this paper and applied to thoracic computed tomography (CT) data of patients with stage III non-small cell lung cancer (NSCLC). According to the registration scheme, initially anatomical set of points such as the vertebral spine, the ribs, and shoulder blades are automatically segmented slice by slice from the two CT scans of the same patient in order to serve as interpolant points. Based on these extracted features, a rigid-body transformation is then applied to provide a pre-registration of the data. To establish correspondence between the feature points, the novel application of the self-organizing maps (SOMs) is adopted. In particular, the automatic correspondence of the interpolant points is based on the initialization of the Kohonen neural network model capable to identify 500 corresponding pairs of points approximately in the two CT sets. Then, radial basis functions (RBFs) using the shifted log function is subsequently employed for elastic warping of the image volume, using the correspondence between the interpolant points, as obtained in the previous phase. Quantitative and qualitative results are also presented to validate the performance of the proposed elastic registration scheme resulting in an alignment error of 6 mm, on average, over 15 CT paired datasets. Finally, changes of the tumor volume in respect to each reference dataset are estimated for all patients, which indicate inspiration and/or movement of the patient during acquisition of the data. Thus, the practical implementation of this scheme could provide estimations of lung tumor volumes during radiotherapy treatment planning. PMID:15854844

  15. Apollo 16 view of moon taken with Fairchild metric mapping camera in orbit

    NASA Technical Reports Server (NTRS)

    1972-01-01

    A newly-analyzed photograph of the southwest quadrant of the Moon with an overlay indicating where the launch vehicle stages from two Apollo missions, 13 and 14, hit the lunar surface. This is the first time two S-IVB stage impact points have been located in a single photo. The S-IVB stage is the thrid stage of the Saturn V launch vehicle. The Riphaeus Mountains run northward between the two impact points. The fresh, raised-rim crater at center left is Euclides; and the largest crater near the horizon at upper left is Landberg. The mare area at lower right is the Known Sea. The photograph was taken by the Apollo 16 Fairchild metric mapping camera in lunar orbit, at a 40-degree north oblique angle. The picture was taken during the Apollo 16 Command/Service Module's 59th revolution of the Moon, at an altitude of 124 kilometers. The Sun elevation was 18 degrees.

  16. Lung iodine mapping by subtraction with image registration allowing for tissue sliding

    NASA Astrophysics Data System (ADS)

    Mohr, Brian; Brink, Monique; Oostveen, Luuk J.; Schuijf, Joanne D.; Prokop, Mathias

    2016-03-01

    Pulmonary embolism is a fairly common and serious entity, so rapid diagnosis and treatment has a significant impact on morbidity and mortality rates. Iodine maps representing tissue perfusion enhancement are commonly generated by dual-energy CT acquisitions to provide information about the effect of the embolism on pulmonary perfusion. Alternatively, the iodine map can be generated by subtracting pre- from post-contrast CT scans as previously reported. Although accurate image registration is essential, subtraction has the advantage of a higher signal-to-noise ratio and suppression of bone. This paper presents an improvement over the previously reported registration algorithm. Significantly, allowance for sliding motion at tissue boundaries is included in the regularization. Pre- and post-contrast helical CT scans were acquired for thirty subjects using a Toshiba Aquilion ONE scanner. Ten of these subjects were designated for algorithm development, while the remaining twenty were reserved for qualitative clinical evaluation. Quantitative evaluation was performed against the previously reported method and using publicly available data for comparison against other methods. Comparison of 100 landmarks in seven datasets shows no change in the mean Euclidean error of 0.48 mm, compared to the previous method. Evaluation in the publicly available DIR-Lab data with 300 annotations results in a mean Euclidean error of 1.17 mm in the ten 4DCT cases and 3.37 mm in the ten COPDGene cases. Clinical evaluation on a sliding scale from 1 (excellent) to 5 (non-diagnostic) indicates a slight, but non-significant, improvement in registration adequacy from 3.1 to 2.9.

  17. Effects of registration error on parametric response map analysis: a simulation study using liver CT-perfusion images

    NASA Astrophysics Data System (ADS)

    Lausch, A.; Jensen, N. K. G.; Chen, J.; Lee, T. Y.; Lock, M.; Wong, E.

    2014-03-01

    Purpose: To investigate the effects of registration error (RE) on parametric response map (PRM) analysis of pre and post-radiotherapy (RT) functional images. Methods: Arterial blood flow maps (ABF) were generated from the CT-perfusion scans of 5 patients with hepatocellular carcinoma. ABF values within each patient map were modified to produce seven new ABF maps simulating 7 distinct post-RT functional change scenarios. Ground truth PRMs were generated for each patient by comparing the simulated and original ABF maps. Each simulated ABF map was then deformed by different magnitudes of realistic respiratory motion in order to simulate RE. PRMs were generated for each of the deformed maps and then compared to the ground truth PRMs to produce estimates of RE-induced misclassification. Main findings: The percentage of voxels misclassified as decreasing, no change, and increasing, increased with RE For all patients, increasing RE was observed to increase the number of high post-RT ABF voxels associated with low pre-RT ABF voxels and vice versa. 3 mm of average tumour RE resulted in 18-45% tumour voxel misclassification rates. Conclusions: RE induced misclassification posed challenges for PRM analysis in the liver where registration accuracy tends to be lower. Quantitative understanding of the sensitivity of the PRM method to registration error is required if PRMs are to be used to guide radiation therapy dose painting techniques.

  18. Fiducial registration error as a statistical process control metric in image-guidance radiotherapy with fiducial markers.

    PubMed

    Ung, N M; Wee, L

    2011-12-01

    Portal imaging of implanted fiducial markers has been in use for image-guided radiotherapy (IGRT) of prostate cancer, with ample attention to localization accuracy and organ motion. The geometric uncertainties in point-based rigid-body matching algorithms during localization of prostate fiducial markers can be quantified in terms of a fiducial registration error (FRE). In this study, the aim is to demonstrate how statistical process control (SPC) can be used to intercept potential problems with rigid-body matching algorithms in a retrospective study of FRE for a pilot cohort of 34 patients with fiducial markers. A procedure for estimating control parameters of a SPC control chart (x-chart) from a small number of initial observations (N) of FRE was implemented. The sensitivity analysis of N on the number of 'in-control' and 'out-of-control' x-charts was also performed. Uncorrected rotational offsets of an individual patient were examined to elucidate possible correlations with the behaviours of an x-chart. Four specific types of qualitative x-chart behaviour have been observed. The number of out-of-control processes was insensitive to the choice of N, provided N ≥ 5. Residual errors of rigid-body registration were contributed from uncorrected rotational offsets in 5 out of 15 'out-of-control' x-charts. Out-of-control x-charts were also shown to be correlated with potential changes in the IGRT processes, which may compromise the quality of the radiation treatment delivery. The SPC methodology, implemented in the form of individually customized x-charts, has been shown to be a useful tool for monitoring process reliability during fiducial-based IGRT for prostate cancer. PMID:22080792

  19. Fiducial registration error as a statistical process control metric in image-guidance radiotherapy with fiducial markers

    NASA Astrophysics Data System (ADS)

    Ung, N. M.; Wee, L.

    2011-12-01

    Portal imaging of implanted fiducial markers has been in use for image-guided radiotherapy (IGRT) of prostate cancer, with ample attention to localization accuracy and organ motion. The geometric uncertainties in point-based rigid-body matching algorithms during localization of prostate fiducial markers can be quantified in terms of a fiducial registration error (FRE). In this study, the aim is to demonstrate how statistical process control (SPC) can be used to intercept potential problems with rigid-body matching algorithms in a retrospective study of FRE for a pilot cohort of 34 patients with fiducial markers. A procedure for estimating control parameters of a SPC control chart (x-chart) from a small number of initial observations (N) of FRE was implemented. The sensitivity analysis of N on the number of 'in-control' and 'out-of-control' x-charts was also performed. Uncorrected rotational offsets of an individual patient were examined to elucidate possible correlations with the behaviours of an x-chart. Four specific types of qualitative x-chart behaviour have been observed. The number of out-of-control processes was insensitive to the choice of N, provided N >= 5. Residual errors of rigid-body registration were contributed from uncorrected rotational offsets in 5 out of 15 'out-of-control' x-charts. Out-of-control x-charts were also shown to be correlated with potential changes in the IGRT processes, which may compromise the quality of the radiation treatment delivery. The SPC methodology, implemented in the form of individually customized x-charts, has been shown to be a useful tool for monitoring process reliability during fiducial-based IGRT for prostate cancer.

  20. Hamiltonian Map to Conformal Modification of Spacetime Metric: Kaluza-Klein and TeVeS

    NASA Astrophysics Data System (ADS)

    Horwitz, Lawrence; Gershon, Avi; Schiffer, Marcelo

    2011-01-01

    It has been shown that the orbits of motion for a wide class of non-relativistic Hamiltonian systems can be described as geodesic flows on a manifold and an associated dual by means of a conformal map. This method can be applied to a four dimensional manifold of orbits in spacetime associated with a relativistic system. We show that a relativistic Hamiltonian which generates Einstein geodesics, with the addition of a world scalar field, can be put into correspondence in this way with another Hamiltonian with conformally modified metric. Such a construction could account for part of the requirements of Bekenstein for achieving the MOND theory of Milgrom in the post-Newtonian limit. The constraints on the MOND theory imposed by the galactic rotation curves, through this correspondence, would then imply constraints on the structure of the world scalar field. We then use the fact that a Hamiltonian with vector gauge fields results, through such a conformal map, in a Kaluza-Klein type theory, and indicate how the TeVeS structure of Bekenstein and Saunders can be put into this framework. We exhibit a class of infinitesimal gauge transformations on the gauge fields {mathcal{U}}_{μ}(x) which preserve the Bekenstein-Sanders condition {mathcal{U}}_{μ}{mathcal{U}}^{μ}=-1. The underlying quantum structure giving rise to these gauge fields is a Hilbert bundle, and the gauge transformations induce a non-commutative behavior to the fields, i.e. they become of Yang-Mills type. Working in the infinitesimal gauge neighborhood of the initial Abelian theory we show that in the Abelian limit the Yang-Mills field equations provide residual nonlinear terms which may avoid the caustic singularity found by Contaldi et al.

  1. Mapping of the prostate in endorectal coil-based MRI/MRSI and CT: A deformable registration and validation study

    SciTech Connect

    Lian, J.; Xing, L.; Hunjan, S.; Dumoulin, C.; Levin, J.; Lo, A.; Watkins, R.; Rohling, K.; Giaquinto, R.; Kim, D.; Spielman, D.; Daniel, B.

    2004-11-01

    The endorectal coil is being increasingly used in magnetic resonance imaging (MRI) and MR spectroscopic imaging (MRSI) to obtain anatomic and metabolic images of the prostate with high signal-to-noise ratio (SNR). In practice, however, the use of endorectal probe inevitably distorts the prostate and other soft tissue organs, making the analysis and the use of the acquired image data in treatment planning difficult. The purpose of this work is to develop a deformable image registration algorithm to map the MRI/MRSI information obtained using an endorectal probe onto CT images and to verify the accuracy of the registration by phantom and patient studies. A mapping procedure involved using a thin plate spline (TPS) transformation was implemented to establish voxel-to-voxel correspondence between a reference image and a floating image with deformation. An elastic phantom with a number of implanted fiducial markers was designed for the validation of the quality of the registration. Radiographic images of the phantom were obtained before and after a series of intentionally introduced distortions. After mapping the distorted phantom to the original one, the displacements of the implanted markers were measured with respect to their ideal positions and the mean error was calculated. In patient studies, CT images of three prostate patients were acquired, followed by 3 Tesla (3 T) MR images with a rigid endorectal coil. Registration quality was estimated by the centroid position displacement and image coincidence index (CI). Phantom and patient studies show that TPS-based registration has achieved significantly higher accuracy than the previously reported method based on a rigid-body transformation and scaling. The technique should be useful to map the MR spectroscopic dataset acquired with ER probe onto the treatment planning CT dataset to guide radiotherapy planning.

  2. Diffeomorphic Metric Mapping and Probabilistic Atlas Generation of Hybrid Diffusion Imaging based on BFOR Signal Basis

    PubMed Central

    Du, Jia; Hosseinbor, A. Pasha; Chung, Moo K.; Bendlin, Barbara B.; Suryawanshi, Gaurav; Alexander, Andrew L.; Qiu, Anqi

    2015-01-01

    We first propose a large deformation diffeomorphic metric mapping algorithm to align multiple b-value diffusion weighted imaging (mDWI) data, specifically acquired via hybrid diffusion imaging (HYDI).We denote this algorithm as LDDMM-HYDI. We then propose a Bayesian probabilistic model for estimating the white matter atlas from HYDIs. We adopt the work given in Hosseinbor et al. (2012) and represent the q-space diffusion signal with the Bessel Fourier orientation reconstruction (BFOR) signal basis. The BFOR framework provides the representation of mDWI in the q-space and the analytic form of the emsemble average propagator (EAP) reconstructure, as well as reduces memory requirement. In addition, since the BFOR signal basis is orthonormal, the L2 norm that quantifies the differences in the q-space signals of any two mDWI datasets can be easily computed as the sum of the squared differences in the BFOR expansion coefficients. In this work, we show that the reorientation of the q-space signal due to spatial transformation can be easily defined on the BFOR signal basis. We incorporate the BFOR signal basis into the LDDMM framework and derive the gradient descent algorithm for LDDMM-HYDI with explicit orientation optimization. Additionally, we extend the previous Bayesian atlas estimation framework for scalar-valued images to HYDIs and derive the expectation-maximization algorithm for solving the HYDI atlas estimation problem. Using real HYDI datasets, we show the Bayesian model generates the white matter atlas with anatomical details. Moreover, we show that it is important to consider the variation of mDWI reorientation due to a small change in diffeomorphic transformation in the LDDMM-HYDI optimization and to incorporate the full information of HYDI for aligning mDWI. Finally, we show that the LDDMM-HYDI outperforms the LDDMM algorithm with diffusion tensors generated from each shell of HYDI. PMID:24972378

  3. Effects of deformable registration algorithms on the creation of statistical maps for preoperative targeting in deep brain stimulation procedures

    NASA Astrophysics Data System (ADS)

    Liu, Yuan; D'Haese, Pierre-Francois; Dawant, Benoit M.

    2014-03-01

    Deep brain stimulation, which is used to treat various neurological disorders, involves implanting a permanent electrode into precise targets deep in the brain. Accurate pre-operative localization of the targets on pre-operative MRI sequence is challenging as these are typically located in homogenous regions with poor contrast. Population-based statistical atlases can assist with this process. Such atlases are created by acquiring the location of efficacious regions from numerous subjects and projecting them onto a common reference image volume using some normalization method. In previous work, we presented results concluding that non-rigid registration provided the best result for such normalization. However, this process could be biased by the choice of the reference image and/or registration approach. In this paper, we have qualitatively and quantitatively compared the performance of six recognized deformable registration methods at normalizing such data in poor contrasted regions onto three different reference volumes using a unique set of data from 100 patients. We study various metrics designed to measure the centroid, spread, and shape of the normalized data. This study leads to a total of 1800 deformable registrations and results show that statistical atlases constructed using different deformable registration methods share comparable centroids and spreads with marginal differences in their shape. Among the six methods being studied, Diffeomorphic Demons produces the largest spreads and centroids that are the furthest apart from the others in general. Among the three atlases, one atlas consistently outperforms the other two with smaller spreads for each algorithm. However, none of the differences in the spreads were found to be statistically significant, across different algorithms or across different atlases.

  4. METRIC model for the estimation and mapping of evapotranspiration in a super intensive olive orchard in Southern Portugal

    NASA Astrophysics Data System (ADS)

    Pôças, Isabel; Nogueira, António; Paço, Teresa A.; Sousa, Adélia; Valente, Fernanda; Silvestre, José; Andrade, José A.; Santos, Francisco L.; Pereira, Luís S.; Allen, Richard G.

    2013-04-01

    Satellite-based surface energy balance models have been successfully applied to estimate and map evapotranspiration (ET). The METRICtm model, Mapping EvapoTranspiration at high Resolution using Internalized Calibration, is one of such models. METRIC has been widely used over an extensive range of vegetation types and applications, mostly focusing annual crops. In the current study, the single-layer-blended METRIC model was applied to Landsat5 TM and Landsat7 ETM+ images to produce estimates of evapotranspiration (ET) in a super intensive olive orchard in Southern Portugal. In sparse woody canopies as in olive orchards, some adjustments in METRIC application related to the estimation of vegetation temperature and of momentum roughness length and sensible heat flux (H) for tall vegetation must be considered. To minimize biases in H estimates due to uncertainties in the definition of momentum roughness length, the Perrier function based on leaf area index and tree canopy architecture, associated with an adjusted estimation of crop height, was used to obtain momentum roughness length estimates. Additionally, to minimize the biases in surface temperature simulations, due to soil and shadow effects, the computation of radiometric temperature considered a three-source condition, where Ts=fcTc+fshadowTshadow+fsunlitTsunlit. As such, the surface temperature (Ts), derived from the thermal band of the Landsat images, integrates the temperature of the canopy (Tc), the temperature of the shaded ground surface (Tshadow), and the temperature of the sunlit ground surface (Tsunlit), according to the relative fraction of vegetation (fc), shadow (fshadow) and sunlit (fsunlit) ground surface, respectively. As the sunlit canopies are the primary source of energy exchange, the effective temperature for the canopy was estimated by solving the three-source condition equation for Tc. To evaluate METRIC performance to estimate ET over the olive grove, several parameters derived from the

  5. Facile and high spatial resolution ratio-metric luminescence thermal mapping in microfluidics by near infrared excited upconversion nanoparticles

    NASA Astrophysics Data System (ADS)

    Wang, Yu; Cao, Wenbin; Li, Shunbo; Wen, Weijia

    2016-02-01

    A local area temperature monitor is important for precise control of chemical and biological processes in microfluidics. In this work, we developed a facile method to realize micron spatial resolution of temperature mapping in a microfluidic channel quickly and cost effectively. Based on the temperature dependent fluorescence emission of NaYF4:Yb3+, Er3+ upconversion nanoparticles (UCNPs) under near-infrared irradiation, ratio-metric imaging of UCNPs doped polydimethylsiloxane can map detailed temperature distribution in the channel. Unlike some reported strategies that utilize temperature sensitive organic dye (such as Rhodamine) to achieve thermal sensing, our method is highly chemically inert and physically stable without any performance degradation in long term operation. Moreover, this method can be easily scaled up or down, since the spatial and temperature resolution is determined by an optical imaging system. Our method supplied a simple and efficient solution for temperature mapping on a heterogeneous surface where usage of an infrared thermal camera was limited.

  6. Efficient Inverse Isoparametric Mapping Algorithm for Whole-Body Computed Tomography Registration Using Deformations Predicted by Nonlinear Finite Element Modeling

    PubMed Central

    Li, Mao; Wittek, Adam; Miller, Karol

    2014-01-01

    Biomechanical modeling methods can be used to predict deformations for medical image registration and particularly, they are very effective for whole-body computed tomography (CT) image registration because differences between the source and target images caused by complex articulated motions and soft tissues deformations are very large. The biomechanics-based image registration method needs to deform the source images using the deformation field predicted by finite element models (FEMs). In practice, the global and local coordinate systems are used in finite element analysis. This involves the transformation of coordinates from the global coordinate system to the local coordinate system when calculating the global coordinates of image voxels for warping images. In this paper, we present an efficient numerical inverse isoparametric mapping algorithm to calculate the local coordinates of arbitrary points within the eight-noded hexahedral finite element. Verification of the algorithm for a nonparallelepiped hexahedral element confirms its accuracy, fast convergence, and efficiency. The algorithm's application in warping of the whole-body CT using the deformation field predicted by means of a biomechanical FEM confirms its reliability in the context of whole-body CT registration. PMID:24828796

  7. Improving parenchyma segmentation by simultaneous estimation of tissue property T1 map and group-wise registration of inversion recovery MR breast images.

    PubMed

    Xing, Ye; Xue, Zhong; Englander, Sarah; Schnall, Mitchell; Shen, Dinggang

    2008-01-01

    The parenchyma tissue in the breast has a strong relation with predictive biomarkers of breast cancer. To better segment parenchyma, we perform segmentation on estimated tissue property T1 map. To improve the estimation of tissue property (T1) which is the basis for parenchyma segmentation, we present an integrated algorithm for simultaneous T1 map estimation, T1 map based parenchyma segmentation and group-wise registration on series of inversion recovery magnetic resonance (MR) breast images. The advantage of using this integrated algorithm is that the simultaneous T1 map estimation (E-step) and group-wise registration (R-step) could benefit each other and jointly improve parenchyma segmentation. In particular, in E-step, T1 map based segmentation could help perform an edge-preserving smoothing on the tentatively estimated noisy T1 map, and could also help provide tissue probability maps to be robustly registered in R-step. Meanwhile, the improved estimation of T1 map could help segment parenchyma in a more accurate way. In R-step, for robust registration, the group-wise registration is performed on the tissue probability maps produced in E-step, rather than the original inversion recovery MR images, since tissue probability maps are the intrinsic tissue property which is invariant to the use of different imaging parameters. The better alignment of images achieved in R-step can help improve T1 map estimation and indirectly the T1 map based parenchyma segmentation. By iteratively performing E-step and R-step, we can simultaneously obtain better results for T1 map estimation, T1 map based segmentation, group-wise registration, and finally parenchyma segmentation. PMID:18979765

  8. Quantifying and Mapping Habitat-Based Biodiversity Metrics Within an Ecosystem Services Framework

    EPA Science Inventory

    Ecosystem services have become a key issue of this century in resource management, conservation planning, human well-being, and environmental decision analysis. Mapping and quantifying ecosystem services have become strategic national interests for integrating ecology with econom...

  9. A National Approach to Quantify and Map Biodiversity Conservation Metrics within an Ecosystem Services Framework

    EPA Science Inventory

    Ecosystem services, i.e., "services provided to humans from natural systems," have become a key issue of this century in resource management, conservation planning, human well-being, and environmental decision analysis. Mapping and quantifying ecosystem services have be...

  10. A National Approach for Mapping and Quantifying Habitat-based Biodiversity Metrics Across Multiple Spatial Scales

    EPA Science Inventory

    Ecosystem services, i.e., "services provided to humans from natural systems," have become a key issue of this century in resource management, conservation planning, and environmental decision analysis. Mapping and quantifying ecosystem services have become strategic national inte...

  11. Evapotranspiration mapping using METRIC for a region with highly advective conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Agriculture in the Texas High Plains accounts for approximately 92% of groundwater withdrawals. Because, groundwater levels are declining in the region, efficient agricultural water use is imperative for sustainability and regional economic viability. Accurate regional evapotranspiration (ET) maps w...

  12. ET mapping with METRIC algorithm using airborne high resolution multispectral remote sensing imagery

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Routine and accurate estimates of spatially distributed evapotranspiration (ET) are essential for managing water resources particularly in irrigated regions such as the U.S. Southern High Plains. For instance, ET maps would assist in the improvement of the Ogallala Aquifer ground water management. M...

  13. A metric map of humans: 23,500 loci in 850 bands

    PubMed Central

    Collins, A.; Frezal, J.; Teague, J.; Morton, N. E.

    1996-01-01

    High-resolution maps integrated with the enhanced location data base software (ldb+) give improved estimates of genetic parameters and reveal characteristics of cytogenetic bands. Chiasma interference is intermediate between Kosambi and Carter–Falconer levels, as in Drosophila and the mouse. The autosomal genetic map is 2832 and 4348 centimorgans in males and females, respectively. Telomeric T-bands are strikingly associated with male recombination and gene density. Position and centromeric heterochromatin have large effects, but nontelomeric R-bands are not significantly different from G-bands. Several possible reasons are discussed. These regularities validate the maps, despite their high resolution and inevitable local errors. No other approach has been demonstrated to integrate such a large number of loci, which are increasing at about 45% per year. The maps and the data and software from which they are constructed are available through the Internet (http://cedar.genetics.soton.ac.uk/public_html). Successive versions of this location data base may also be accessed on CD-ROM. PMID:8962130

  14. Definition of the metric on the space clos{sub ∅}(X) of closed subsets of a metric space X and properties of mappings with values in clos{sub ∅}(R{sup n})

    SciTech Connect

    Zhukovskii, E S; Panasenko, E A

    2014-09-30

    The paper is concerned with the extension of tests for superpositional measurability, Filippov's implicit function lemma and the Scorza Dragoni property to set-valued (and, as a corollary, to single-valued) mappings that fail to satisfy the Carathéodory conditions (the upper Carathéodory conditions) and are not continuous (upper semicontinuous) in the phase variable. The corresponding results depend on the introduction of the space clos{sub ∅}(X) of all closed subsets (including the empty set) of an arbitrary metric space X; a metric on clos{sub ∅}(X) is proposed; the space clos{sub ∅}(X) is shown to be complete whenever the original space X is; a criterion for convergence of a sequence is put forward; mappings with values in clos{sub ∅}(X) are studied. Some results on set-valued mappings satisfying the Carathéodory conditions and having compact values in R{sup n} are shown to hold for mappings with values in clos{sub ∅}(R{sup n}), measurable in the first argument, and continuous in the proposed metric in the second argument. Bibliography: 22 titles.

  15. Registration of neural maps through value-dependent learning: modeling the alignment of auditory and visual maps in the barn owl's optic tectum.

    PubMed

    Rucci, M; Tononi, G; Edelman, G M

    1997-01-01

    In the optic tectum (OT) of the barn owl, visual and auditory maps of space are found in close alignment with each other. Experiments in which such alignment has been disrupted have shown a considerable degree of plasticity in the auditory map. The external nucleus of the inferior colliculus (ICx), an auditory center that projects massively to the tectum, is the main site of plasticity; however, it is unclear by what mechanisms the alignment between the auditory map in the ICx and the visual map in the tectum is established and maintained. In this paper, we propose that such map alignment occurs through a process of value-dependent learning. According to this paradigm, value systems, identifiable with neuromodulatory systems having diffuse projections, respond to innate or acquired salient cues and modulate changes in synaptic efficacy in many brain regions. To test the self-consistency of this proposal, we have developed a computer model of the principal neural structures involved in the process of auditory localization in the barn owl. This is complemented by simulations of aspects of the barn owl phenotype and of the experimental environment. In the model, a value system is activated whenever the owl carries out a foveation toward an auditory stimulus. A term representing the diffuse release of a neuromodulator interacts with local pre- and postsynaptic events to determine synaptic changes in the ICx. Through large-scale simulations, we have replicated a number of experimental observations on the development of spatial alignment between the auditory and visual maps during normal visual experience, after the retinal image is shifted through prismatic goggles, and after the reestablishment of normal visual input. The results suggest that value-dependent learning is sufficient to account for the registration of auditory and visual maps of space in the OT of the barn owl, and they lead to a number of experimental predictions. PMID:8987759

  16. Combined lineage mapping and gene expression profiling of embryonic brain patterning using ultrashort pulse microscopy and image registration

    NASA Astrophysics Data System (ADS)

    Gibbs, Holly C.; Dodson, Colin R.; Bai, Yuqiang; Lekven, Arne C.; Yeh, Alvin T.

    2014-12-01

    During embryogenesis, presumptive brain compartments are patterned by dynamic networks of gene expression. The spatiotemporal dynamics of these networks, however, have not been characterized with sufficient resolution for us to understand the regulatory logic resulting in morphogenetic cellular behaviors that give the brain its shape. We have developed a new, integrated approach using ultrashort pulse microscopy [a high-resolution, two-photon fluorescence (2PF)-optical coherence microscopy (OCM) platform using 10-fs pulses] and image registration to study brain patterning and morphogenesis in zebrafish embryos. As a demonstration, we used time-lapse 2PF to capture midbrain-hindbrain boundary morphogenesis and a wnt1 lineage map from embryos during brain segmentation. We then performed in situ hybridization to deposit NBT/BCIP, where wnt1 remained actively expressed, and reimaged the embryos with combined 2PF-OCM. When we merged these datasets using morphological landmark registration, we found that the mechanism of boundary formation differs along the dorsoventral axis. Dorsally, boundary sharpening is dominated by changes in gene expression, while ventrally, sharpening may be accomplished by lineage sorting. We conclude that the integrated visualization of lineage reporter and gene expression domains simultaneously with brain morphology will be useful for understanding how changes in gene expression give rise to proper brain compartmentalization and structure.

  17. Registration of a rice gene mapping population of Lemont X Jasmine 85 recombinant inbred lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A mapping population developed from a cross of rice (Oryza sativa L.) tropical japonica cultivar ‘Lemont’ and indica cultivar ‘Jasmine 85’ was developed to facilitate genetic studies for important agronomic traits. The indica- and japonica-based rice recombinant inbred line (RIL) mapping population ...

  18. Registration of the Ki14 × B73 recombinant inbred mapping population of maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Ohio Agricultural Research and Development Center released Ki14 × B73 (KB) maize (Zea mays L.) mapping population, a set of 119 recombinant inbred lines (RILs), in March 2007. The mapping population was derived from a biparental cross between inbreds Ki14 (NCRPIS accession Ames 27259) and B73 (...

  19. Mapping populations at risk: improving spatial demographic data for infectious disease modeling and metric derivation.

    PubMed

    Tatem, Andrew J; Adamo, Susana; Bharti, Nita; Burgert, Clara R; Castro, Marcia; Dorelien, Audrey; Fink, Gunter; Linard, Catherine; John, Mendelsohn; Montana, Livia; Montgomery, Mark R; Nelson, Andrew; Noor, Abdisalan M; Pindolia, Deepa; Yetman, Greg; Balk, Deborah

    2012-01-01

    The use of Global Positioning Systems (GPS) and Geographical Information Systems (GIS) in disease surveys and reporting is becoming increasingly routine, enabling a better understanding of spatial epidemiology and the improvement of surveillance and control strategies. In turn, the greater availability of spatially referenced epidemiological data is driving the rapid expansion of disease mapping and spatial modeling methods, which are becoming increasingly detailed and sophisticated, with rigorous handling of uncertainties. This expansion has, however, not been matched by advancements in the development of spatial datasets of human population distribution that accompany disease maps or spatial models.Where risks are heterogeneous across population groups or space or dependent on transmission between individuals, spatial data on human population distributions and demographic structures are required to estimate infectious disease risks, burdens, and dynamics. The disease impact in terms of morbidity, mortality, and speed of spread varies substantially with demographic profiles, so that identifying the most exposed or affected populations becomes a key aspect of planning and targeting interventions. Subnational breakdowns of population counts by age and sex are routinely collected during national censuses and maintained in finer detail within microcensus data. Moreover, demographic and health surveys continue to collect representative and contemporary samples from clusters of communities in low-income countries where census data may be less detailed and not collected regularly. Together, these freely available datasets form a rich resource for quantifying and understanding the spatial variations in the sizes and distributions of those most at risk of disease in low income regions, yet at present, they remain unconnected data scattered across national statistical offices and websites.In this paper we discuss the deficiencies of existing spatial population datasets and

  20. Registration of USG 3209/Jaypee Wheat Recombinant Inbred Line Mapping Population

    Technology Transfer Automated Retrieval System (TEKTRAN)

    ‘USG 3209’/‘Jaypee’ (Reg. No. MP-3, NSL 465777 MAP), is a soft red winter wheat (Triticum aestivum L.) recombinant inbred line (RIL) population developed by Virginia Polytechnic Institute and State University and submitted to the USDA–ARS National Small Grains Germplasm Research Facility in Aberdeen...

  1. The EnviroAtlas ‐ Developing a National Approach to Quantify and Map Metrics within an Ecosystem Services Framework. Subfocus: Multi‐scale Biodiversity Conservation Metrics

    EPA Science Inventory

    Ecosystem services, i.e., "services provided to humans from natural systems," have become a key issue of this century in resource management, conservation planning, human well-being, and environmental decision analysis. Mapping and quantifying ecosystem services have become stra...

  2. What About Metric?

    ERIC Educational Resources Information Center

    Barbrow, Louis E.

    Implications of the change to the metric system in our daily lives are discussed. Advantages of the metric system are presented, especially its decimal base and ease of calculation which are demonstrated by several worked examples. Some further sources of information are listed. A world map indicates the few remaining countries that have not yet…

  3. Metric Madness

    ERIC Educational Resources Information Center

    Kroon, Cindy D.

    2007-01-01

    Created for a Metric Day activity, Metric Madness is a board game for two to four players. Students review and practice metric vocabulary, measurement, and calculations by playing the game. Playing time is approximately twenty to thirty minutes.

  4. An augmented parametric response map with consideration of image registration error: towards guidance of locally adaptive radiotherapy

    NASA Astrophysics Data System (ADS)

    Lausch, Anthony; Chen, Jeff; Ward, Aaron D.; Gaede, Stewart; Lee, Ting-Yim; Wong, Eugene

    2014-11-01

    Parametric response map (PRM) analysis is a voxel-wise technique for predicting overall treatment outcome, which shows promise as a tool for guiding personalized locally adaptive radiotherapy (RT). However, image registration error (IRE) introduces uncertainty into this analysis which may limit its use for guiding RT. Here we extend the PRM method to include an IRE-related PRM analysis confidence interval and also incorporate multiple graded classification thresholds to facilitate visualization. A Gaussian IRE model was used to compute an expected value and confidence interval for PRM analysis. The augmented PRM (A-PRM) was evaluated using CT-perfusion functional image data from patients treated with RT for glioma and hepatocellular carcinoma. Known rigid IREs were simulated by applying one thousand different rigid transformations to each image set. PRM and A-PRM analyses of the transformed images were then compared to analyses of the original images (ground truth) in order to investigate the two methods in the presence of controlled IRE. The A-PRM was shown to help visualize and quantify IRE-related analysis uncertainty. The use of multiple graded classification thresholds also provided additional contextual information which could be useful for visually identifying adaptive RT targets (e.g. sub-volume boosts). The A-PRM should facilitate reliable PRM guided adaptive RT by allowing the user to identify if a patient’s unique IRE-related PRM analysis uncertainty has the potential to influence target delineation.

  5. Advanced Tie Feature Matching for the Registration of Mobile Mapping Imaging Data and Aerial Imagery

    NASA Astrophysics Data System (ADS)

    Jende, P.; Peter, M.; Gerke, M.; Vosselman, G.

    2016-06-01

    Mobile Mapping's ability to acquire high-resolution ground data is opposing unreliable localisation capabilities of satellite-based positioning systems in urban areas. Buildings shape canyons impeding a direct line-of-sight to navigation satellites resulting in a deficiency to accurately estimate the mobile platform's position. Consequently, acquired data products' positioning quality is considerably diminished. This issue has been widely addressed in the literature and research projects. However, a consistent compliance of sub-decimetre accuracy as well as a correction of errors in height remain unsolved. We propose a novel approach to enhance Mobile Mapping (MM) image orientation based on the utilisation of highly accurate orientation parameters derived from aerial imagery. In addition to that, the diminished exterior orientation parameters of the MM platform will be utilised as they enable the application of accurate matching techniques needed to derive reliable tie information. This tie information will then be used within an adjustment solution to correct affected MM data. This paper presents an advanced feature matching procedure as a prerequisite to the aforementioned orientation update. MM data is ortho-projected to gain a higher resemblance to aerial nadir data simplifying the images' geometry for matching. By utilising MM exterior orientation parameters, search windows may be used in conjunction with a selective keypoint detection and template matching. Originating from different sensor systems, however, difficulties arise with respect to changes in illumination, radiometry and a different original perspective. To respond to these challenges for feature detection, the procedure relies on detecting keypoints in only one image. Initial tests indicate a considerable improvement in comparison to classic detector/descriptor approaches in this particular matching scenario. This method leads to a significant reduction of outliers due to the limited availability

  6. The Insight ToolKit image registration framework

    PubMed Central

    Avants, Brian B.; Tustison, Nicholas J.; Stauffer, Michael; Song, Gang; Wu, Baohua; Gee, James C.

    2014-01-01

    Publicly available scientific resources help establish evaluation standards, provide a platform for teaching and improve reproducibility. Version 4 of the Insight ToolKit (ITK4) seeks to establish new standards in publicly available image registration methodology. ITK4 makes several advances in comparison to previous versions of ITK. ITK4 supports both multivariate images and objective functions; it also unifies high-dimensional (deformation field) and low-dimensional (affine) transformations with metrics that are reusable across transform types and with composite transforms that allow arbitrary series of geometric mappings to be chained together seamlessly. Metrics and optimizers take advantage of multi-core resources, when available. Furthermore, ITK4 reduces the parameter optimization burden via principled heuristics that automatically set scaling across disparate parameter types (rotations vs. translations). A related approach also constrains steps sizes for gradient-based optimizers. The result is that tuning for different metrics and/or image pairs is rarely necessary allowing the researcher to more easily focus on design/comparison of registration strategies. In total, the ITK4 contribution is intended as a structure to support reproducible research practices, will provide a more extensive foundation against which to evaluate new work in image registration and also enable application level programmers a broad suite of tools on which to build. Finally, we contextualize this work with a reference registration evaluation study with application to pediatric brain labeling.1 PMID:24817849

  7. Color Metric.

    ERIC Educational Resources Information Center

    Illinois State Office of Education, Springfield.

    This booklet was designed to convey metric information in pictoral form. The use of pictures in the coloring book enables the more mature person to grasp the metric message instantly, whereas the younger person, while coloring the picture, will be exposed to the metric information long enough to make the proper associations. Sheets of the booklet…

  8. Feature-Based Quality Evaluation of 3d Point Clouds - Study of the Performance of 3d Registration Algorithms

    NASA Astrophysics Data System (ADS)

    Ridene, T.; Goulette, F.; Chendeb, S.

    2013-08-01

    The production of realistic 3D map databases is continuously growing. We studied an approach of 3D mapping database producing based on the fusion of heterogeneous 3D data. In this term, a rigid registration process was performed. Before starting the modeling process, we need to validate the quality of the registration results, and this is one of the most difficult and open research problems. In this paper, we suggest a new method of evaluation of 3D point clouds based on feature extraction and comparison with a 2D reference model. This method is based on tow metrics: binary and fuzzy.

  9. SU-E-J-113: Effects of Deformable Registration On First-Order Texture Maps Calculated From Thoracic Lung CT Scans

    SciTech Connect

    Smith, C; Cunliffe, A; Al-Hallaq, H; Armato, S

    2015-06-15

    Purpose: To determine the stability of eight first-order texture features following the deformable registration of serial computed tomography (CT) scans. Methods: CT scans at two different time points from 10 patients deemed to have no lung abnormalities by a radiologist were collected. Following lung segmentation using an in-house program, texture maps were calculated from 32×32-pixel regions of interest centered at every pixel in the lungs. The texture feature value of the ROI was assigned to the center pixel of the ROI in the corresponding location of the texture map. Pixels in the square ROI not contained within the segmented lung were not included in the calculation. To quantify the agreement between ROI texture features in corresponding pixels of the baseline and follow-up texture maps, the Fraunhofer MEVIS EMPIRE10 deformable registration algorithm was used to register the baseline and follow-up scans. Bland-Altman analysis was used to compare registered scan pairs by computing normalized bias (nBias), defined as the feature value change normalized to the mean feature value, and normalized range of agreement (nRoA), defined as the range spanned by the 95% limits of agreement normalized to the mean feature value. Results: Each patient’s scans contained between 6.8–15.4 million ROIs. All of the first-order features investigated were found to have an nBias value less than 0.04% and an nRoA less than 19%, indicating that the variability introduced by deformable registration was low. Conclusion: The eight first-order features investigated were found to be registration stable. Changes in CT texture maps could allow for temporal-spatial evaluation of the evolution of lung abnormalities relating to a variety of diseases on a patient-by-patient basis. SGA and HA receives royalties and licensing fees through the University of Chicago for computer-aided diagnosis technology. Research reported in this publication was supported by the National Institute Of General

  10. Primary Metrics.

    ERIC Educational Resources Information Center

    Otto, Karen; And Others

    These 55 activity cards were created to help teachers implement a unit on metric measurement. They were designed for students aged 5 to 10, but could be used with older students. Cards are color-coded in terms of activities on basic metric terms, prefixes, length, and other measures. Both individual and small-group games and ideas are included.…

  11. Mastering Metrics

    ERIC Educational Resources Information Center

    Parrot, Annette M.

    2005-01-01

    By the time students reach a middle school science course, they are expected to make measurements using the metric system. However, most are not practiced in its use, as their experience in metrics is often limited to one unit they were taught in elementary school. This lack of knowledge is not wholly the fault of formal education. Although the…

  12. Automated landmark-guided deformable image registration.

    PubMed

    Kearney, Vasant; Chen, Susie; Gu, Xuejun; Chiu, Tsuicheng; Liu, Honghuan; Jiang, Lan; Wang, Jing; Yordy, John; Nedzi, Lucien; Mao, Weihua

    2015-01-01

    The purpose of this work is to develop an automated landmark-guided deformable image registration (LDIR) algorithm between the planning CT and daily cone-beam CT (CBCT) with low image quality. This method uses an automated landmark generation algorithm in conjunction with a local small volume gradient matching search engine to map corresponding landmarks between the CBCT and the planning CT. The landmarks act as stabilizing control points in the following Demons deformable image registration. LDIR is implemented on graphics processing units (GPUs) for parallel computation to achieve ultra fast calculation. The accuracy of the LDIR algorithm has been evaluated on a synthetic case in the presence of different noise levels and data of six head and neck cancer patients. The results indicate that LDIR performed better than rigid registration, Demons, and intensity corrected Demons for all similarity metrics used. In conclusion, LDIR achieves high accuracy in the presence of multimodality intensity mismatch and CBCT noise contamination, while simultaneously preserving high computational efficiency. PMID:25479095

  13. Automated landmark-guided deformable image registration

    NASA Astrophysics Data System (ADS)

    Kearney, Vasant; Chen, Susie; Gu, Xuejun; Chiu, Tsuicheng; Liu, Honghuan; Jiang, Lan; Wang, Jing; Yordy, John; Nedzi, Lucien; Mao, Weihua

    2015-01-01

    The purpose of this work is to develop an automated landmark-guided deformable image registration (LDIR) algorithm between the planning CT and daily cone-beam CT (CBCT) with low image quality. This method uses an automated landmark generation algorithm in conjunction with a local small volume gradient matching search engine to map corresponding landmarks between the CBCT and the planning CT. The landmarks act as stabilizing control points in the following Demons deformable image registration. LDIR is implemented on graphics processing units (GPUs) for parallel computation to achieve ultra fast calculation. The accuracy of the LDIR algorithm has been evaluated on a synthetic case in the presence of different noise levels and data of six head and neck cancer patients. The results indicate that LDIR performed better than rigid registration, Demons, and intensity corrected Demons for all similarity metrics used. In conclusion, LDIR achieves high accuracy in the presence of multimodality intensity mismatch and CBCT noise contamination, while simultaneously preserving high computational efficiency.

  14. Lessons Learned From Large-Scale Evapotranspiration and Root Zone Soil Moisture Mapping Using Ground Measurements (meteorological, LAS, EC) and Remote Sensing (METRIC)

    NASA Astrophysics Data System (ADS)

    Hendrickx, J. M. H.; Allen, R. G.; Myint, S. W.; Ogden, F. L.

    2015-12-01

    Large scale mapping of evapotranspiration and root zone soil moisture is only possible when satellite images are used. The spatial resolution of this imagery typically depends on its temporal resolution or the satellite overpass time. For example, the Landsat satellite acquires images at 30 m resolution every 16 days while the MODIS satellite acquires images at 250 m resolution every day. In this study we deal with optical/thermal imagery that is impacted by cloudiness contrary to radar imagery that penetrates through clouds. Due to cloudiness, the temporal resolution of Landsat drops from 16 days to about one clear sky Landsat image per month in the southwestern USA and about one every ten years in the humid tropics of Panama. Only by launching additional satellites can the temporal resolution be improved. Since this is too costly, an alternative is found by using ground measurements with high temporal resolution (from minutes to days) but poor spatial resolution. The challenge for large-scale evapotranspiration and root zone soil moisture mapping is to construct a layer stack consisting of N time layers covering the period of interest each containing M pixels covering the region of interest. We will present examples of the Phoenix Active Management Area in AZ (14,600 km2), Green River Basin in WY (44,000 km2), the Kishwaukee Watershed in IL (3,150 km2), the area covered by Landsat Path 28/Row 35 in OK (30,000 km2) and the Agua Salud Watershed in Panama (200 km2). In these regions we used Landsat or MODIS imagery for mapping evapotranspiration and root zone soil moisture by the algorithm Mapping EvapoTranspiration at high Resolution with Internalized Calibration (METRIC) together with meteorological measurements and sometimes either Large Aperture Scintillometers (LAS) or Eddy Covariance (EC). We conclude with lessons learned for future large-scale hydrological studies.

  15. Metric transition

    NASA Technical Reports Server (NTRS)

    1992-01-01

    This report describes NASA's metric transition in terms of seven major program elements. Six are technical areas involving research, technology development, and operations; they are managed by specific Program Offices at NASA Headquarters. The final program element, Institutional Management, covers both NASA-wide functional management under control of NASA Headquarters and metric capability development at the individual NASA Field Installations. This area addresses issues common to all NASA program elements, including: Federal, state, and local coordination; standards; private industry initiatives; public-awareness initiatives; and employee training. The concluding section identifies current barriers and impediments to metric transition; NASA has no specific recommendations for consideration by the Congress.

  16. Performance metrics for state-of-the-art airborne magnetic and electromagnetic systems for mapping and detection of unexploded ordnance

    NASA Astrophysics Data System (ADS)

    Doll, William E.; Bell, David T.; Gamey, T. Jeffrey; Beard, Les P.; Sheehan, Jacob R.; Norton, Jeannemarie

    2010-04-01

    Over the past decade, notable progress has been made in the performance of airborne geophysical systems for mapping and detection of unexploded ordnance in terrestrial and shallow marine environments. For magnetometer systems, the most significant improvements include development of denser magnetometer arrays and vertical gradiometer configurations. In prototype analyses and recent Environmental Security Technology Certification Program (ESTCP) assessments using new production systems the greatest sensitivity has been achieved with a vertical gradiometer configuration, despite model-based survey design results which suggest that dense total-field arrays would be superior. As effective as magnetometer systems have proven to be at many sites, they are inadequate at sites where basalts and other ferrous geologic formations or soils produce anomalies that approach or exceed those of target ordnance items. Additionally, magnetometer systems are ineffective where detection of non-ferrous ordnance items is of primary concern. Recent completion of the Battelle TEM-8 airborne time-domain electromagnetic system represents the culmination of nearly nine years of assessment and development of airborne electromagnetic systems for UXO mapping and detection. A recent ESTCP demonstration of this system in New Mexico showed that it was able to detect 99% of blind-seeded ordnance items, 81mm and larger, and that it could be used to map in detail a bombing target on a basalt flow where previous airborne magnetometer surveys had failed. The probability of detection for the TEM-8 in the blind-seeded study area was better than that reported for a dense-array total-field magnetometer demonstration of the same blind-seeded site, and the TEM-8 system successfully detected these items with less than half as many anomaly picks as the dense-array total-field magnetometer system.

  17. Edible Metrics.

    ERIC Educational Resources Information Center

    Mecca, Christyna E.

    1998-01-01

    Presents an exercise that introduces students to scientific measurements using only metric units. At the conclusion of the exercise, students eat the experiment. Requires dried refried beans, crackers or chips, and dried instant powder for lemonade. (DDR)

  18. User Registration in EOSDIS

    NASA Astrophysics Data System (ADS)

    Murphy, K. J.; Mitchell, A. E.

    2009-12-01

    Throughout the lifetime of EOSDIS the topic of user registration has received varied attention. Initially, for example, users ordering data from the Earth Science Data Gateway were required to register for delivery of media orders, to check order status and save profile information for future interactions. As EOSDIS embraced evolution of its data systems, the mostly centralized search and order system was replaced with a more diverse set of interfaces allowing (mostly) anonymous online access to data, tools and services. The changes to EOSDIS were embraced by users but the anonymous nature of the interaction made it more difficult to characterize users, capture metrics and provide customized services that benefit users. Additionally, new tools and interfaces have been developed without a centralized registration system. Currently a patchwork of independent registration systems exists throughout EOSDIS for ordering data and interacting with online tools and services. Each requires a separate username and password that must be managed by users. A consolidation of registration systems presents an opportunity to improve not only the user experience through tool customization and simplification of password management, but the understanding of users. This work discusses the options for implementing a common user registration for the EOSDIS, anticipated benefits and pitfalls.

  19. Think Metric

    USGS Publications Warehouse

    U.S. Geological Survey

    1978-01-01

    The International System of Units, as the metric system is officially called, provides for a single "language" to describe weights and measures over the world. We in the United States together with the people of Brunei, Burma, and Yemen are the only ones who have not put this convenient system into effect. In the passage of the Metric Conversion Act of 1975, Congress determined that we also will adopt it, but the transition will be voluntary.

  20. Registration of a rice gene-mapping population consisting of 'TeQing'-into-'Lemont' backcross introgression lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A new rice (Oryza sativa L.) mapping population consisting of 123 'TeQing'-into-'Lemont' backcross introgression lines (TILs) (Reg. No. MP-5, NSL 477436 MAP) was developed by the USDA-ARS Rice Research Unit at the Texas A&M University System AgriLife Research and Extension Center at Beaumont, TX, in...

  1. MIND Demons for MR-to-CT Deformable Image Registration In Image-Guided Spine Surgery

    PubMed Central

    Reaungamornrat, S.; De Silva, T.; Uneri, A.; Wolinsky, J.-P.; Khanna, A. J.; Kleinszig, G.; Vogt, S.; Prince, J. L.; Siewerdsen, J. H.

    2016-01-01

    Purpose Localization of target anatomy and critical structures defined in preoperative MR images can be achieved by means of multi-modality deformable registration to intraoperative CT. We propose a symmetric diffeomorphic deformable registration algorithm incorporating a modality independent neighborhood descriptor (MIND) and a robust Huber metric for MR-to-CT registration. Method The method, called MIND Demons, solves for the deformation field between two images by optimizing an energy functional that incorporates both the forward and inverse deformations, smoothness on the velocity fields and the diffeomorphisms, a modality-insensitive similarity function suitable to multi-modality images, and constraints on geodesics in Lagrangian coordinates. Direct optimization (without relying on an exponential map of stationary velocity fields used in conventional diffeomorphic Demons) is carried out using a Gauss-Newton method for fast convergence. Registration performance and sensitivity to registration parameters were analyzed in simulation, in phantom experiments, and clinical studies emulating application in image-guided spine surgery, and results were compared to conventional mutual information (MI) free-form deformation (FFD), local MI (LMI) FFD, and normalized MI (NMI) Demons. Result The method yielded sub-voxel invertibility (0.006 mm) and nonsingular spatial Jacobians with capability to preserve local orientation and topology. It demonstrated improved registration accuracy in comparison to the reference methods, with mean target registration error (TRE) of 1.5 mm compared to 10.9, 2.3, and 4.6 mm for MI FFD, LMI FFD, and NMI Demons methods, respectively. Validation in clinical studies demonstrated realistic deformation with sub-voxel TRE in cases of cervical, thoracic, and lumbar spine. Conclusions A modality-independent deformable registration method has been developed to estimate a viscoelastic diffeomorphic map between preoperative MR and intraoperative CT. The

  2. MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery

    NASA Astrophysics Data System (ADS)

    Reaungamornrat, S.; De Silva, T.; Uneri, A.; Wolinsky, J.-P.; Khanna, A. J.; Kleinszig, G.; Vogt, S.; Prince, J. L.; Siewerdsen, J. H.

    2016-03-01

    Purpose: Localization of target anatomy and critical structures defined in preoperative MR images can be achieved by means of multi-modality deformable registration to intraoperative CT. We propose a symmetric diffeomorphic deformable registration algorithm incorporating a modality independent neighborhood descriptor (MIND) and a robust Huber metric for MR-to-CT registration. Method: The method, called MIND Demons, solves for the deformation field between two images by optimizing an energy functional that incorporates both the forward and inverse deformations, smoothness on the velocity fields and the diffeomorphisms, a modality-insensitive similarity function suitable to multi-modality images, and constraints on geodesics in Lagrangian coordinates. Direct optimization (without relying on an exponential map of stationary velocity fields used in conventional diffeomorphic Demons) is carried out using a Gauss-Newton method for fast convergence. Registration performance and sensitivity to registration parameters were analyzed in simulation, in phantom experiments, and clinical studies emulating application in image-guided spine surgery, and results were compared to conventional mutual information (MI) free-form deformation (FFD), local MI (LMI) FFD, and normalized MI (NMI) Demons. Result: The method yielded sub-voxel invertibility (0.006 mm) and nonsingular spatial Jacobians with capability to preserve local orientation and topology. It demonstrated improved registration accuracy in comparison to the reference methods, with mean target registration error (TRE) of 1.5 mm compared to 10.9, 2.3, and 4.6 mm for MI FFD, LMI FFD, and NMI Demons methods, respectively. Validation in clinical studies demonstrated realistic deformation with sub-voxel TRE in cases of cervical, thoracic, and lumbar spine. Conclusions: A modality-independent deformable registration method has been developed to estimate a

  3. Automated hexahedral meshing of anatomic structures using deformable registration.

    PubMed

    Grosland, Nicole M; Bafna, Ritesh; Magnotta, Vincent A

    2009-02-01

    This work introduces a novel method of automating the process of patient-specific finite element (FE) model development using a mapped mesh technique. The objective is to map a predefined mesh (template) of high quality directly onto a new bony surface (target) definition, thereby yielding a similar mesh with minimal user interaction. To bring the template mesh into correspondence with the target surface, a deformable registration technique based on the FE method has been adopted. The procedure has been made hierarchical allowing several levels of mesh refinement to be used, thus reducing the time required to achieve a solution. Our initial efforts have focused on the phalanx bones of the human hand. Mesh quality metrics, such as element volume and distortion were evaluated. Furthermore, the distance between the target surface and the final mapped mesh were measured. The results have satisfactorily proven the applicability of the proposed method. PMID:18688764

  4. Geodesic active fields--a geometric framework for image registration.

    PubMed

    Zosso, Dominique; Bresson, Xavier; Thiran, Jean-Philippe

    2011-05-01

    In this paper we present a novel geometric framework called geodesic active fields for general image registration. In image registration, one looks for the underlying deformation field that best maps one image onto another. This is a classic ill-posed inverse problem, which is usually solved by adding a regularization term. Here, we propose a multiplicative coupling between the registration term and the regularization term, which turns out to be equivalent to embed the deformation field in a weighted minimal surface problem. Then, the deformation field is driven by a minimization flow toward a harmonic map corresponding to the solution of the registration problem. This proposed approach for registration shares close similarities with the well-known geodesic active contours model in image segmentation, where the segmentation term (the edge detector function) is coupled with the regularization term (the length functional) via multiplication as well. As a matter of fact, our proposed geometric model is actually the exact mathematical generalization to vector fields of the weighted length problem for curves and surfaces introduced by Caselles-Kimmel-Sapiro. The energy of the deformation field is measured with the Polyakov energy weighted by a suitable image distance, borrowed from standard registration models. We investigate three different weighting functions, the squared error and the approximated absolute error for monomodal images, and the local joint entropy for multimodal images. As compared to specialized state-of-the-art methods tailored for specific applications, our geometric framework involves important contributions. Firstly, our general formulation for registration works on any parametrizable, smooth and differentiable surface, including nonflat and multiscale images. In the latter case, multiscale images are registered at all scales simultaneously, and the relations between space and scale are intrinsically being accounted for. Second, this method is, to

  5. Metric System.

    ERIC Educational Resources Information Center

    Del Mod System, Dover, DE.

    This autoinstructional unit deals with the identification of units of measure in the metric system and the construction of relevant conversion tables. Students in middle school or in grade ten, taking a General Science course, can handle this learning activity. It is recommended that high, middle or low level achievers can use the program.…

  6. Health Effects of Lesion Localization in Multiple Sclerosis: Spatial Registration and Confounding Adjustment

    PubMed Central

    Eloyan, Ani; Shou, Haochang; Shinohara, Russell T.; Sweeney, Elizabeth M.; Nebel, Mary Beth; Cuzzocreo, Jennifer L.; Calabresi, Peter A.; Reich, Daniel S.; Lindquist, Martin A.; Crainiceanu, Ciprian M.

    2014-01-01

    Brain lesion localization in multiple sclerosis (MS) is thought to be associated with the type and severity of adverse health effects. However, several factors hinder statistical analyses of such associations using large MRI datasets: 1) spatial registration algorithms developed for healthy individuals may be less effective on diseased brains and lead to different spatial distributions of lesions; 2) interpretation of results requires the careful selection of confounders; and 3) most approaches have focused on voxel-wise regression approaches. In this paper, we evaluated the performance of five registration algorithms and observed that conclusions regarding lesion localization can vary substantially with the choice of registration algorithm. Methods for dealing with confounding factors due to differences in disease duration and local lesion volume are introduced. Voxel-wise regression is then extended by the introduction of a metric that measures the distance between a patient-specific lesion mask and the population prevalence map. PMID:25233361

  7. Registration of the IS3620C/BTx623 recombinant inbred mapping population of sorghum (Sorghum bicolor L. [Moench.])

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The BTx623 x IS3620C sorghum [Sorghum bicolor (L.) Moench.] mapping population (Reg. No. _______, NSL ____, [represented as BTx623/IS3620C]), is a set of 430 F7 to F9 recombinant inbred lines [RILs](USDA-ARS Germplasm Information Network (GRIN) PI 658758 through PI 659060 and PI 659144 through PI 65...

  8. Mapping of dose distribution from IMRT onto MRI-guided high dose rate brachytherapy using deformable image registration for cervical cancer treatments: preliminary study with commercially available software

    PubMed Central

    Huq, M. Saiful; Houser, Chris; Beriwal, Sushil; Michalski, Dariusz

    2014-01-01

    Purpose For patients undergoing external beam radiation therapy (EBRT) and brachytherapy, recommendations for target doses and constraints are based on calculation of the equivalent dose in 2 Gy fractions (EQD2) from each phase. At present, the EBRT dose distribution is assumed to be uniform throughout the pelvis. We performed a preliminary study to determine whether deformable dose distribution mapping from the EBRT onto magnetic resonance (MR) images for the brachytherapy would yield differences in doses for organs at risk (OARs) and high-risk clinical target volume (HR-CTV). Material and methods Nine cervical cancer patients were treated to a total dose of 45 Gy in 25 fractions using intensity-modulated radiation therapy (IMRT), followed by MRI-based 3D high dose rate (HDR) brachytherapy. Retrospectively, the IMRT planning CT images were fused with the MR image for each fraction of brachytherapy using deformable image registration. The deformed IMRT dose onto MR images were converted to EQD2 and compared to the uniform dose assumption. Results For all patients, the EQD2 from the EBRT phase was significantly higher with deformable registration than with the conventional uniform dose distribution assumption. The mean EQD2 ± SD for HR-CTV D90 was 45.7 ± 0.7 Gy vs. 44.3 Gy for deformable vs. uniform dose distribution, respectively (p < 0.001). The dose to 2 cc of the bladder, rectum, and sigmoid was 46.4 ± 1.2 Gy, 46.2 ± 1.0 Gy, and 48.0 ± 2.5 Gy, respectively with deformable dose distribution, and was significantly higher than with uniform dose distribution (43.2 Gy for all OAR, p < 0.001). Conclusions This study reveals that deformed EBRT dose distribution to HR-CTV and OARs in MR images for brachytherapy is technically feasible, and achieves differences compared to a uniform dose distribution. Therefore, the assumption that EBRT contributes the same dose value may need to be carefully investigated further based on deformable image registration. PMID:25097559

  9. The application of iterative closest point (ICP) registration to improve 3D terrain mapping estimates using the flash 3D ladar system

    NASA Astrophysics Data System (ADS)

    Woods, Jack; Armstrong, Ernest E.; Armbruster, Walter; Richmond, Richard

    2010-04-01

    The primary purpose of this research was to develop an effective means of creating a 3D terrain map image (point-cloud) in GPS denied regions from a sequence of co-bore sighted visible and 3D LIDAR images. Both the visible and 3D LADAR cameras were hard mounted to a vehicle. The vehicle was then driven around the streets of an abandoned village used as a training facility by the German Army and imagery was collected. The visible and 3D LADAR images were then fused and 3D registration performed using a variation of the Iterative Closest Point (ICP) algorithm. The ICP algorithm is widely used for various spatial and geometric alignment of 3D imagery producing a set of rotation and translation transformations between two 3D images. ICP rotation and translation information obtain from registering the fused visible and 3D LADAR imagery was then used to calculate the x-y plane, range and intensity (xyzi) coordinates of various structures (building, vehicles, trees etc.) along the driven path. The xyzi coordinates information was then combined to create a 3D terrain map (point-cloud). In this paper, we describe the development and application of 3D imaging techniques (most specifically the ICP algorithm) used to improve spatial, range and intensity estimates of imagery collected during urban terrain mapping using a co-bore sighted, commercially available digital video camera with focal plan of 640×480 pixels and a 3D FLASH LADAR. Various representations of the reconstructed point-clouds for the drive through data will also be presented.

  10. Image Segmentation, Registration, Compression, and Matching

    NASA Technical Reports Server (NTRS)

    Yadegar, Jacob; Wei, Hai; Yadegar, Joseph; Ray, Nilanjan; Zabuawala, Sakina

    2011-01-01

    A novel computational framework was developed of a 2D affine invariant matching exploiting a parameter space. Named as affine invariant parameter space (AIPS), the technique can be applied to many image-processing and computer-vision problems, including image registration, template matching, and object tracking from image sequence. The AIPS is formed by the parameters in an affine combination of a set of feature points in the image plane. In cases where the entire image can be assumed to have undergone a single affine transformation, the new AIPS match metric and matching framework becomes very effective (compared with the state-of-the-art methods at the time of this reporting). No knowledge about scaling or any other transformation parameters need to be known a priori to apply the AIPS framework. An automated suite of software tools has been created to provide accurate image segmentation (for data cleaning) and high-quality 2D image and 3D surface registration (for fusing multi-resolution terrain, image, and map data). These tools are capable of supporting existing GIS toolkits already in the marketplace, and will also be usable in a stand-alone fashion. The toolkit applies novel algorithmic approaches for image segmentation, feature extraction, and registration of 2D imagery and 3D surface data, which supports first-pass, batched, fully automatic feature extraction (for segmentation), and registration. A hierarchical and adaptive approach is taken for achieving automatic feature extraction, segmentation, and registration. Surface registration is the process of aligning two (or more) data sets to a common coordinate system, during which the transformation between their different coordinate systems is determined. Also developed here are a novel, volumetric surface modeling and compression technique that provide both quality-guaranteed mesh surface approximations and compaction of the model sizes by efficiently coding the geometry and connectivity

  11. A wavelet-based image quality metric for the assessment of 3D synthesized views

    NASA Astrophysics Data System (ADS)

    Bosc, Emilie; Battisti, Federica; Carli, Marco; Le Callet, Patrick

    2013-03-01

    In this paper we present a novel image quality assessment technique for evaluating virtual synthesized views in the context of multi-view video. In particular, Free Viewpoint Videos are generated from uncompressed color views and their compressed associated depth maps by means of the View Synthesis Reference Software, provided by MPEG. Prior to the synthesis step, the original depth maps are encoded with different coding algorithms thus leading to the creation of additional artifacts in the synthesized views. The core of proposed wavelet-based metric is in the registration procedure performed to align the synthesized view and the original one, and in the skin detection that has been applied considering that the same distortion is more annoying if visible on human subjects rather than on other parts of the scene. The effectiveness of the metric is evaluated by analyzing the correlation of the scores obtained with the proposed metric with Mean Opinion Scores collected by means of subjective tests. The achieved results are also compared against those of well known objective quality metrics. The experimental results confirm the effectiveness of the proposed metric.

  12. Do Tumors in the Lung Deform During Normal Respiration? An Image Registration Investigation

    SciTech Connect

    Wu Jianzhou; Lei Peng; Shekhar, Raj; Li Huiling; Suntharalingam, Mohan; D'Souza, Warren D.

    2009-09-01

    Purpose: The purpose of this study was to investigate whether lung tumors may be described adequately using a rigid body assumption or whether they deform during normal respiration. Methods and Materials: Thirty patients with early stage non-small-cell lung cancer underwent four-dimensional (4D) computed tomography (CT) simulation. The gross tumor volume (GTV) was delineated on the 4D CT images. Image registration was performed in the vicinity of the GTV. The volume of interest for registration was the GTV and minimal volume of surrounding non-GTV tissue. Three types of registration were performed: translation only, translation + rotation, and deformable. The GTV contour from end-inhale was mapped to end-exhale using the registration-derived transformation field. The results were evaluated using three metrics: overlap index (OI), root-mean-squared distance (RMS), and Hausdorff distance (HD). Results: After translation only image registration, on average OI increased by 21.3%, RMS and HD reduced by 1.2 mm and 2.0 mm, respectively. The succeeding increases in OI after translation + rotation and deformable registration were 1.1% and 1.4% respectively. The succeeding reductions in RMS were 0.1 mm and 0.2 mm respectively. No reduction in HD was observed after translation + rotation and deformable image registration compared with translation only registration. The difference in the results from the three registration scenarios was independent of GTV size and motion amplitude. Conclusions: The primary effect of normal respiration on lung tumors was the translation of tumors. Rotation and deformation of lung tumors was determined to be minimal.

  13. Nonlinear functional connectivity network recovery in the human brain with mutual connectivity analysis (MCA): convergent cross-mapping and non-metric clustering

    NASA Astrophysics Data System (ADS)

    Wismüller, Axel; Abidin, Anas Z.; D'Souza, Adora M.; Wang, Xixi; Hobbs, Susan K.; Leistritz, Lutz; Nagarajan, Mahesh B.

    2015-03-01

    We explore a computational framework for functional connectivity analysis in resting-state functional MRI (fMRI) data acquired from the human brain for recovering the underlying network structure and understanding causality between network components. Termed mutual connectivity analysis (MCA), this framework involves two steps, the first of which is to evaluate the pair-wise cross-prediction performance between fMRI pixel time series within the brain. In a second step, the underlying network structure is subsequently recovered from the affinity matrix using non-metric network clustering approaches, such as the so-called Louvain method. Finally, we use convergent cross-mapping (CCM) to study causality between different network components. We demonstrate our MCA framework in the problem of recovering the motor cortex network associated with hand movement from resting state fMRI data. Results are compared with a ground truth of active motor cortex regions as identified by a task-based fMRI sequence involving a finger-tapping stimulation experiment. Our results regarding causation between regions of the motor cortex revealed a significant directional variability and were not readily interpretable in a consistent manner across subjects. However, our results on whole-slice fMRI analysis demonstrate that MCA-based model-free recovery of regions associated with the primary motor cortex and supplementary motor area are in close agreement with localization of similar regions achieved with a task-based fMRI acquisition. Thus, we conclude that our MCA methodology can extract and visualize valuable information concerning the underlying network structure between different regions of the brain in resting state fMRI.

  14. Evaluating Similarity Measures for Brain Image Registration

    PubMed Central

    Razlighi, Q. R.; Kehtarnavaz, N.; Yousefi, S.

    2013-01-01

    Evaluation of similarity measures for image registration is a challenging problem due to its complex interaction with the underlying optimization, regularization, image type and modality. We propose a single performance metric, named robustness, as part of a new evaluation method which quantifies the effectiveness of similarity measures for brain image registration while eliminating the effects of the other parts of the registration process. We show empirically that similarity measures with higher robustness are more effective in registering degraded images and are also more successful in performing intermodal image registration. Further, we introduce a new similarity measure, called normalized spatial mutual information, for 3D brain image registration whose robustness is shown to be much higher than the existing ones. Consequently, it tolerates greater image degradation and provides more consistent outcomes for intermodal brain image registration. PMID:24039378

  15. Metricize Yourself

    NASA Astrophysics Data System (ADS)

    Falbo, Maria K.

    2006-12-01

    In lab and homework, students should check whether or not their quantitative answers to physics questions make sense in the context of the problem. Unfortunately it is still the case in the US that many students don’t have a “feel” for oC, kg, cm, liters or Newtons. This problem contributes to the inability of students to check answers. It is also the case that just “going over” the tables in the text can be boring and dry. In this talk I’ll demonstrate some classroom activities that can be used throughout the year to give students a metric context in which quantitative answers can be interpreted.

  16. Automatic Masking for Robust 3D-2D Image Registration in Image-Guided Spine Surgery

    PubMed Central

    Ketcha, M. D.; De Silva, T.; Uneri, A.; Kleinszig, G.; Vogt, S.; Wolinsky, J.-P.; Siewerdsen, J. H.

    2016-01-01

    During spinal neurosurgery, patient-specific information, planning, and annotation such as vertebral labels can be mapped from preoperative 3D CT to intraoperative 2D radiographs via image-based 3D-2D registration. Such registration has been shown to provide a potentially valuable means of decision support in target localization as well as quality assurance of the surgical product. However, robust registration can be challenged by mismatch in image content between the preoperative CT and intraoperative radiographs, arising, for example, from anatomical deformation or the presence of surgical tools within the radiograph. In this work, we develop and evaluate methods for automatically mitigating the effect of content mismatch by leveraging the surgical planning data to assign greater weight to anatomical regions known to be reliable for registration and vital to the surgical task while removing problematic regions that are highly deformable or often occluded by surgical tools. We investigated two approaches to assigning variable weight (i.e., "masking") to image content and/or the similarity metric: (1) masking the preoperative 3D CT ("volumetric masking"); and (2) masking within the 2D similarity metric calculation ("projection masking"). The accuracy of registration was evaluated in terms of projection distance error (PDE) in 61 cases selected from an IRB-approved clinical study. The best performing of the masking techniques was found to reduce the rate of gross failure (PDE > 20 mm) from 11.48% to 5.57% in this challenging retrospective data set. These approaches provided robustness to content mismatch and eliminated distinct failure modes of registration. Such improvement was gained without additional workflow and has motivated incorporation of the masking methods within a system under development for prospective clinical studies.

  17. Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis

    PubMed Central

    Gutman, Boris A.; Jahanshad, Neda; Ching, Christopher R.K.; Wang, Yalin; Kochunov, Peter V.; Nichols, Thomas E.; Thompson, Paul M.

    2015-01-01

    We present a multi-cohort shape heritability study, extending the fast spherical demons registration to subcortical shapes via medial modeling. A multi-channel demons registration based on vector spherical harmonics is applied to medial and curvature features, while controlling for metric distortion. We registered and compared seven subcortical structures of 1480 twins and siblings from the Queensland Twin Imaging Study and Human Connectome Project: Thalamus, Caudate, Putamen, Pallidum, Hippocampus, Amygdala, and Nucleus Accumbens. Radial distance and tensor-based morphometry (TBM) features were found to be highly heritable throughout the entire basal ganglia and limbic system. Surface maps reveal subtle variation in heritability across functionally distinct parts of each structure. Medial Demons reveals more significantly heritable regions than two previously described surface registration methods. This approach may help to prioritize features and measures for genome-wide association studies. PMID:26413211

  18. Biodiversity Metrics

    EPA Science Inventory

    Ecosystem services, i.e., "services provided to humans from natural systems," have become a key focus of this century in resource management, conservation planning, human well-being, and environmental decision analysis. Mapping and quantifying ecosystem services have become strat...

  19. Registration of cortical surfaces using sulcal landmarks for group analysis of MEG data.

    PubMed

    Joshi, Anand A; Shattuck, David W; Thompson, Paul M; Leahy, Richard M

    2007-06-01

    We present a method to register individual cortical surfaces to a surface-based brain atlas or canonical template using labeled sulcal curves as landmark constraints. To map one cortex smoothly onto another, we minimize a thin-plate spline energy defined on the surface by solving the associated partial differential equations (PDEs). By using covariant derivatives in solving these PDEs, we compute the bending energy with respect to the intrinsic geometry of the 3D surface rather than evaluating it in the flattened metric of the 2D parameter space. This covariant approach greatly reduces the confounding effects of the surface parameterization on the resulting registration. PMID:20824115

  20. Make It Metric.

    ERIC Educational Resources Information Center

    Camilli, Thomas

    Measurement is perhaps the most frequently used form of mathematics. This book presents activities for learning about the metric system designed for upper intermediate and junior high levels. Discussions include: why metrics, history of metrics, changing to a metric world, teaching tips, and formulas. Activities presented are: metrics all around…

  1. Narrow band deformable registration of prostate magnetic resonance imaging, magnetic resonance spectroscopic imaging, and computed tomography studies

    SciTech Connect

    Schreibmann, Eduard; Xing Lei . E-mail: lei@reyes.stanford.edu

    2005-06-01

    Purpose: Endorectal (ER) coil-based magnetic resonance imaging (MRI) and magnetic resonance spectroscopic imaging (MRSI) is often used to obtain anatomic and metabolic images of the prostate and to accurately identify and assess the intraprostatic lesions. Recent advancements in high-field (3 Tesla or above) MR techniques affords significantly enhanced signal-to-noise ratio and makes it possible to obtain high-quality MRI data. In reality, the use of rigid or inflatable endorectal probes deforms the shape of the prostate gland, and the images so obtained are not directly usable in radiation therapy planning. The purpose of this work is to apply a narrow band deformable registration model to faithfully map the acquired information from the ER-based MRI/MRSI onto treatment planning computed tomography (CT) images. Methods and Materials: A narrow band registration, which is a hybrid method combining the advantages of pixel-based and distance-based registration techniques, was used to directly register ER-based MRI/MRSI with CT. The normalized correlation between the two input images for registration was used as the metric, and the calculation was restricted to those points contained in the narrow bands around the user-delineated structures. The narrow band method is inherently efficient because of the use of a priori information of the meaningful contour data. The registration was performed in two steps. First, the two input images were grossly aligned using a rigid registration. The detailed mapping was then modeled by free form deformations based on B-spline. The limited memory Broyden-Fletcher-Goldfarb-Shanno algorithm (L-BFGS), which is known for its superior performance in dealing with high-dimensionality problems, was implemented to optimize the metric function. The convergence behavior of the algorithm was studied by self-registering an MR image with 100 randomly initiated relative positions. To evaluate the performance of the algorithm, an MR image was

  2. NASA metrication activities

    NASA Technical Reports Server (NTRS)

    Vlannes, P. N.

    1978-01-01

    NASA's organization and policy for metrification, history from 1964, NASA participation in Federal agency activities, interaction with nongovernmental metrication organizations, and the proposed metrication assessment study are reviewed.

  3. Registration of interferometric SAR images

    NASA Technical Reports Server (NTRS)

    Lin, Qian; Vesecky, John F.; Zebker, Howard A.

    1992-01-01

    Interferometric synthetic aperture radar (INSAR) is a new way of performing topography mapping. Among the factors critical to mapping accuracy is the registration of the complex SAR images from repeated orbits. A new algorithm for registering interferometric SAR images is presented. A new figure of merit, the average fluctuation function of the phase difference image, is proposed to evaluate the fringe pattern quality. The process of adjusting the registration parameters according to the fringe pattern quality is optimized through a downhill simplex minimization algorithm. The results of applying the proposed algorithm to register two pairs of Seasat SAR images with a short baseline (75 m) and a long baseline (500 m) are shown. It is found that the average fluctuation function is a very stable measure of fringe pattern quality allowing very accurate registration.

  4. Science as Knowledge, Practice, and Map Making: The Challenge of Defining Metrics for Evaluating and Improving DOE-Funded Basic Experimental Science

    SciTech Connect

    Bodnarczuk, M.

    1993-03-01

    Industrial R&D laboratories have been surprisingly successful in developing performance objectives and metrics that convincingly show that planning, management, and improvement techniques can be value-added to the actual output of R&D organizations. In this paper, I will discuss the more difficult case of developing analogous constructs for DOE-funded non-nuclear, non-weapons basic research, or as I will refer to it - basic experimental science. Unlike most industrial R&D or the bulk of applied science performed at the National Renewable Energy Laboratory (NREL), the purpose of basic experimental science is producing new knowledge (usually published in professional journals) that has no immediate application to the first link (the R) of a planned R&D chain. Consequently, performance objectives and metrics are far more difficult to define. My claim is that if one can successfully define metrics for evaluating and improving DOE-funded basic experimental science (which is the most difficult case), then defining such constructs for DOE-funded applied science should be much less problematic. With the publication of the DOE Standard - Implementation Guide for Quality Assurance Programs for Basic and Applied Research (DOE-ER-STD-6001-92) and the development of a conceptual framework for integrating all the DOE orders, we need to move aggressively toward the threefold next phase: (1) focusing the management elements found in DOE-ER-STD-6001-92 on the main output of national laboratories - the experimental science itself; (2) developing clearer definitions of basic experimental science as practice not just knowledge; and (3) understanding the relationship between the metrics that scientists use for evaluating the performance of DOE-funded basic experimental science, the management elements of DOE-ER-STD-6001-92, and the notion of continuous improvement.

  5. DTI registration in atlas based fiber analysis of infantile Krabbe disease

    PubMed Central

    Wang, Yi; Gupta, Aditya; Liu, Zhexing; Zhang, Hui; Escolar, Maria L.; Gilmore, John H.; Gouttard, Sylvain; Fillard, Pierre; Maltbie, Eric; Gerig, Guido; Styner, Martin

    2011-01-01

    In recent years, diffusion tensor imaging (DTI) has become the modality of choice to investigate white matter pathology in the developing brain. To study neonate Krabbe disease with DTI, we evaluate the performance of linear and non-linear DTI registration algorithms for atlas based fiber tract analysis. The DTI scans of 10 age-matched neonates with infantile Krabbe disease are mapped into an atlas for the analysis of major fiber tracts - the genu and splenium of the corpus callosum, the internal capsules tracts and the uncinate fasciculi. The neonate atlas is based on 377 healthy control subjects, generated using an unbiased diffeomorphic atlas building method. To evaluate the performance of one linear and seven nonlinear commonly used registration algorithms for DTI we propose the use of two novel evaluation metrics: a regional matching quality criterion incorporating the local tensor orientation similarity, and a fiber property profile based metric using normative correlation. Our experimental results indicate that the whole tensor based registration method within the DTI-ToolKit (DTI-TK) shows the best performance for our application. PMID:21256236

  6. 32 CFR 263.4 - Registration of vehicles.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 2 2011-07-01 2011-07-01 false Registration of vehicles. 263.4 Section 263.4...) MISCELLANEOUS TRAFFIC AND VEHICLE CONTROL ON CERTAIN DEFENSE MAPPING AGENCY SITES § 263.4 Registration of...) Temporary registration for a specified period of time will be permitted for temporarily hired, detailed,...

  7. Image Registration: A Necessary Evil

    NASA Technical Reports Server (NTRS)

    Bell, James; McLachlan, Blair; Hermstad, Dexter; Trosin, Jeff; George, Michael W. (Technical Monitor)

    1995-01-01

    Registration of test and reference images is a key component of nearly all PSP data reduction techniques. This is done to ensure that a test image pixel viewing a particular point on the model is ratioed by the reference image pixel which views the same point. Typically registration is needed to account for model motion due to differing airloads when the wind-off and wind-on images are taken. Registration is also necessary when two cameras are used for simultaneous acquisition of data from a dual-frequency paint. This presentation will discuss the advantages and disadvantages of several different image registration techniques. In order to do so, it is necessary to propose both an accuracy requirement for image registration and a means for measuring the accuracy of a particular technique. High contrast regions in the unregistered images are most sensitive to registration errors, and it is proposed that these regions be used to establish the error limits for registration. Once this is done, the actual registration error can be determined by locating corresponding points on the test and reference images, and determining how well a particular registration technique matches them. An example of this procedure is shown for three transforms used to register images of a semispan model. Thirty control points were located on the model. A subset of the points were used to determine the coefficients of each registration transform, and the error with which each transform aligned the remaining points was determined. The results indicate the general superiority of a third-order polynomial over other candidate transforms, as well as showing how registration accuracy varies with number of control points. Finally, it is proposed that image registration may eventually be done away with completely. As more accurate image resection techniques and more detailed model surface grids become available, it will be possible to map raw image data onto the model surface accurately. Intensity

  8. Measuring in Metric.

    ERIC Educational Resources Information Center

    Sorenson, Juanita S.

    Eight modules for an in-service course on metric education for elementary teachers are included in this document. The modules are on an introduction to the metric system, length and basic prefixes, volume, mass, temperature, relationships within the metric system, and metric and English system relationships. The eighth one is on developing a…

  9. Real-time estimation of FLE statistics for 3-D tracking with point-based registration.

    PubMed

    Wiles, Andrew D; Peters, Terry M

    2009-09-01

    Target registration error (TRE) has become a widely accepted error metric in point-based registration since the error metric was introduced in the 1990s. It is particularly prominent in image-guided surgery (IGS) applications where point-based registration is used in both image registration and optical tracking. In point-based registration, the TRE is a function of the fiducial marker geometry, location of the target and the fiducial localizer error (FLE). While the first two items are easily obtained, the FLE is usually estimated using an a priori technique and applied without any knowledge of real-time information. However, if the FLE can be estimated in real-time, particularly as it pertains to optical tracking, then the TRE can be estimated more robustly. In this paper, a method is presented where the FLE statistics are estimated from the latest measurement of the fiducial registration error (FRE) statistics. The solution is obtained by solving a linear system of equations of the form Ax=b for each marker at each time frame where x are the six independent FLE covariance parameters and b are the six independent estimated FRE covariance parameters. The A matrix is only a function of the tool geometry and hence the inverse of the matrix can be computed a priori and used at each instant in which the FLE estimation is required, hence minimizing the level of computation at each frame. When using a good estimate of the FRE statistics, Monte Carlo simulations demonstrate that the root mean square of the FLE can be computed within a range of 70-90 microm. Robust estimation of the TRE for an optically tracked tool, using a good estimate of the FLE, will provide two enhancements in IGS. First, better patient to image registration will be obtained by using the TRE of the optical tool as a weighting factor of point-based registration used to map the patient to image space. Second, the directionality of the TRE can be relayed back to the surgeon giving the surgeon the option

  10. Biomechanical model as a registration tool for image-guided neurosurgery: evaluation against BSpline registration

    PubMed Central

    Mostayed, Ahmed; Garlapati, Revanth Reddy; Joldes, Grand Roman; Wittek, Adam; Roy, Aditi; Kikinis, Ron; Warfield, Simon K.; Miller, Karol

    2013-01-01

    In this paper we evaluate the accuracy of warping of neuro-images using brain deformation predicted by means of a patient-specific biomechanical model against registration using a BSpline-based free form deformation algorithm. Unlike the Bspline algorithm, biomechanics-based registration does not require an intra-operative MR image which is very expensive and cumbersome to acquire. Only sparse intra-operative data on the brain surface is sufficient to compute deformation for the whole brain. In this contribution the deformation fields obtained from both methods are qualitatively compared and overlaps of Canny edges extracted from the images are examined. We define an edge based Hausdorff distance metric to quantitatively evaluate the accuracy of registration for these two algorithms. The qualitative and quantitative evaluations indicate that our biomechanics-based registration algorithm, despite using much less input data, has at least as high registration accuracy as that of the BSpline algorithm. PMID:23771299

  11. Mapping.

    ERIC Educational Resources Information Center

    Kinney, Douglas M.; McIntosh, Willard L.

    1979-01-01

    The area of geological mapping in the United States in 1978 increased greatly over that reported in 1977; state geological maps were added for California, Idaho, Nevada, and Alaska last year. (Author/BB)

  12. NASA metric transition plan

    NASA Astrophysics Data System (ADS)

    NASA science publications have used the metric system of measurement since 1970. Although NASA has maintained a metric use policy since 1979, practical constraints have restricted actual use of metric units. In 1988, an amendment to the Metric Conversion Act of 1975 required the Federal Government to adopt the metric system except where impractical. In response to Public Law 100-418 and Executive Order 12770, NASA revised its metric use policy and developed this Metric Transition Plan. NASA's goal is to use the metric system for program development and functional support activities to the greatest practical extent by the end of 1995. The introduction of the metric system into new flight programs will determine the pace of the metric transition. Transition of institutional capabilities and support functions will be phased to enable use of the metric system in flight program development and operations. Externally oriented elements of this plan will introduce and actively support use of the metric system in education, public information, and small business programs. The plan also establishes a procedure for evaluating and approving waivers and exceptions to the required use of the metric system for new programs. Coordination with other Federal agencies and departments (through the Interagency Council on Metric Policy) and industry (directly and through professional societies and interest groups) will identify sources of external support and minimize duplication of effort.

  13. NASA metric transition plan

    NASA Technical Reports Server (NTRS)

    1992-01-01

    NASA science publications have used the metric system of measurement since 1970. Although NASA has maintained a metric use policy since 1979, practical constraints have restricted actual use of metric units. In 1988, an amendment to the Metric Conversion Act of 1975 required the Federal Government to adopt the metric system except where impractical. In response to Public Law 100-418 and Executive Order 12770, NASA revised its metric use policy and developed this Metric Transition Plan. NASA's goal is to use the metric system for program development and functional support activities to the greatest practical extent by the end of 1995. The introduction of the metric system into new flight programs will determine the pace of the metric transition. Transition of institutional capabilities and support functions will be phased to enable use of the metric system in flight program development and operations. Externally oriented elements of this plan will introduce and actively support use of the metric system in education, public information, and small business programs. The plan also establishes a procedure for evaluating and approving waivers and exceptions to the required use of the metric system for new programs. Coordination with other Federal agencies and departments (through the Interagency Council on Metric Policy) and industry (directly and through professional societies and interest groups) will identify sources of external support and minimize duplication of effort.

  14. Performance metrics for evaluating system suitability in liquid chromatography—Mass spectrometry peptide mass mapping of protein therapeutics and monoclonal antibodies

    PubMed Central

    Zhou, Mowei; Gucinski, Ashley C; Boyne, Michael T

    2015-01-01

    The use of liquid chromatography – mass spectrometry (LC-MS) for the characterization of proteins can provide a plethora of information related to their structure, including amino acid sequence determination and analysis of posttranslational modifications. The variety of LC-MS based applications has led to the use of LC-MS characterization of therapeutic proteins and monoclonal antibodies as an integral part of the regulatory approval process. However, the improper use of an LC-MS system, related to intrinsic instrument limitations, improper tuning parameters, or poorly optimized methods may result in the production of low quality data. Improper system performance may arise from subtle changes in operating conditions that limit the ability to detect low abundance species. To address this issue, we systematically evaluated LC-MS/MS operating parameters to identify a set of metrics that can be used in a workflow to determine if a system is suitable for its intended purpose. Development of this workflow utilized a bovine serum albumin (BSA) digest standard spiked with synthetic peptides present at 0.1% to 100% of the BSA digest peptide concentration to simulate the detection of low abundance species using a traditional bottom-up workflow and data-dependent MS2 acquisition. BSA sequence coverage, a commonly used indicator for instrument performance did not effectively identify settings that led to limited dynamic range or poorer absolute mass accuracy on 2 separate LC-MS systems. Additional metrics focusing on the detection limit and sensitivity for peptide identification were determined to be necessary to establish system suitability for protein therapeutic characterization by LC-MS. PMID:26218711

  15. A Multistage Approach for Image Registration.

    PubMed

    Bowen, Francis; Hu, Jianghai; Du, Eliza Yingzi

    2016-09-01

    Successful image registration is an important step for object recognition, target detection, remote sensing, multimodal content fusion, scene blending, and disaster assessment and management. The geometric and photometric variations between images adversely affect the ability for an algorithm to estimate the transformation parameters that relate the two images. Local deformations, lighting conditions, object obstructions, and perspective differences all contribute to the challenges faced by traditional registration techniques. In this paper, a novel multistage registration approach is proposed that is resilient to view point differences, image content variations, and lighting conditions. Robust registration is realized through the utilization of a novel region descriptor which couples with the spatial and texture characteristics of invariant feature points. The proposed region descriptor is exploited in a multistage approach. A multistage process allows the utilization of the graph-based descriptor in many scenarios thus allowing the algorithm to be applied to a broader set of images. Each successive stage of the registration technique is evaluated through an effective similarity metric which determines subsequent action. The registration of aerial and street view images from pre- and post-disaster provide strong evidence that the proposed method estimates more accurate global transformation parameters than traditional feature-based methods. Experimental results show the robustness and accuracy of the proposed multistage image registration methodology. PMID:26292357

  16. Semantic Metrics for Object Oriented Design

    NASA Technical Reports Server (NTRS)

    Etzkorn, Lethe

    2003-01-01

    The purpose of this proposal is to research a new suite of object-oriented (OO) software metrics, called semantic metrics, that have the potential to help software engineers identify fragile, low quality code sections much earlier in the development cycle than is possible with traditional OO metrics. With earlier and better Fault detection, software maintenance will be less time consuming and expensive, and software reusability will be improved. Because it is less costly to correct faults found earlier than to correct faults found later in the software lifecycle, the overall cost of software development will be reduced. Semantic metrics can be derived from the knowledge base of a program understanding system. A program understanding system is designed to understand a software module. Once understanding is complete, the knowledge-base contains digested information about the software module. Various semantic metrics can be collected on the knowledge base. This new kind of metric measures domain complexity, or the relationship of the software to its application domain, rather than implementation complexity, which is what traditional software metrics measure. A semantic metric will thus map much more closely to qualities humans are interested in, such as cohesion and maintainability, than is possible using traditional metrics, that are calculated using only syntactic aspects of software.

  17. Interactive multigrid refinement for deformable image registration.

    PubMed

    Zhou, Wu; Xie, Yaoqin

    2013-01-01

    Deformable image registration is the spatial mapping of corresponding locations between images and can be used for important applications in radiotherapy. Although numerous methods have attempted to register deformable medical images automatically, such as salient-feature-based registration (SFBR), free-form deformation (FFD), and demons, no automatic method for registration is perfect, and no generic automatic algorithm has shown to work properly for clinical applications due to the fact that the deformation field is often complex and cannot be estimated well by current automatic deformable registration methods. This paper focuses on how to revise registration results interactively for deformable image registration. We can manually revise the transformed image locally in a hierarchical multigrid manner to make the transformed image register well with the reference image. The proposed method is based on multilevel B-spline to interactively revise the deformable transformation in the overlapping region between the reference image and the transformed image. The resulting deformation controls the shape of the transformed image and produces a nice registration or improves the registration results of other registration methods. Experimental results in clinical medical images for adaptive radiotherapy demonstrated the effectiveness of the proposed method. PMID:24232828

  18. DR-TAMAS: Diffeomorphic Registration for Tensor Accurate Alignment of Anatomical Structures.

    PubMed

    Irfanoglu, M Okan; Nayak, Amritha; Jenkins, Jeffrey; Hutchinson, Elizabeth B; Sadeghi, Neda; Thomas, Cibu P; Pierpaoli, Carlo

    2016-05-15

    In this work, we propose DR-TAMAS (Diffeomorphic Registration for Tensor Accurate alignMent of Anatomical Structures), a novel framework for intersubject registration of Diffusion Tensor Imaging (DTI) data sets. This framework is optimized for brain data and its main goal is to achieve an accurate alignment of all brain structures, including white matter (WM), gray matter (GM), and spaces containing cerebrospinal fluid (CSF). Currently most DTI-based spatial normalization algorithms emphasize alignment of anisotropic structures. While some diffusion-derived metrics, such as diffusion anisotropy and tensor eigenvector orientation, are highly informative for proper alignment of WM, other tensor metrics such as the trace or mean diffusivity (MD) are fundamental for a proper alignment of GM and CSF boundaries. Moreover, it is desirable to include information from structural MRI data, e.g., T1-weighted or T2-weighted images, which are usually available together with the diffusion data. The fundamental property of DR-TAMAS is to achieve global anatomical accuracy by incorporating in its cost function the most informative metrics locally. Another important feature of DR-TAMAS is a symmetric time-varying velocity-based transformation model, which enables it to account for potentially large anatomical variability in healthy subjects and patients. The performance of DR-TAMAS is evaluated with several data sets and compared with other widely-used diffeomorphic image registration techniques employing both full tensor information and/or DTI-derived scalar maps. Our results show that the proposed method has excellent overall performance in the entire brain, while being equivalent to the best existing methods in WM. PMID:26931817

  19. Fluid Registration of Diffusion Tensor Images Using Information Theory

    PubMed Central

    Chiang, Ming-Chang; Leow, Alex D.; Klunder, Andrea D.; Dutton, Rebecca A.; Barysheva, Marina; Rose, Stephen E.; McMahon, Katie L.; de Zubicaray, Greig I.; Toga, Arthur W.; Thompson, Paul M.

    2008-01-01

    We apply an information-theoretic cost metric, the symmetrized Kullback-Leibler (sKL) divergence, or J-divergence, to fluid registration of diffusion tensor images. The difference between diffusion tensors is quantified based on the sKL-divergence of their associated probability density functions (PDFs). Three-dimensional DTI data from 34 subjects were fluidly registered to an optimized target image. To allow large image deformations but preserve image topology, we regularized the flow with a large-deformation diffeomorphic mapping based on the kinematics of a Navier-Stokes fluid. A driving force was developed to minimize the J-divergence between the deforming source and target diffusion functions, while reorienting the flowing tensors to preserve fiber topography. In initial experiments, we showed that the sKL-divergence based on full diffusion PDFs is adaptable to higher-order diffusion models, such as high angular resolution diffusion imaging (HARDI). The sKL-divergence was sensitive to subtle differences between two diffusivity profiles, showing promise for nonlinear registration applications and multisubject statistical analysis of HARDI data. PMID:18390342

  20. Comparison of landmark-based and automatic methods for cortical surface registration.

    PubMed

    Pantazis, Dimitrios; Joshi, Anand; Jiang, Jintao; Shattuck, David W; Bernstein, Lynne E; Damasio, Hanna; Leahy, Richard M

    2010-02-01

    Group analysis of structure or function in cerebral cortex typically involves, as a first step, the alignment of cortices. A surface-based approach to this problem treats the cortex as a convoluted surface and coregisters across subjects so that cortical landmarks or features are aligned. This registration can be performed using curves representing sulcal fundi and gyral crowns to constrain the mapping. Alternatively, registration can be based on the alignment of curvature metrics computed over the entire cortical surface. The former approach typically involves some degree of user interaction in defining the sulcal and gyral landmarks while the latter methods can be completely automated. Here we introduce a cortical delineation protocol consisting of 26 consistent landmarks spanning the entire cortical surface. We then compare the performance of a landmark-based registration method that uses this protocol with that of two automatic methods implemented in the software packages FreeSurfer and BrainVoyager. We compare performance in terms of discrepancy maps between the different methods, the accuracy with which regions of interest are aligned, and the ability of the automated methods to correctly align standard cortical landmarks. Our results show similar performance for ROIs in the perisylvian region for the landmark-based method and FreeSurfer. However, the discrepancy maps showed larger variability between methods in occipital and frontal cortex and automated methods often produce misalignment of standard cortical landmarks. Consequently, selection of the registration approach should consider the importance of accurate sulcal alignment for the specific task for which coregistration is being performed. When automatic methods are used, the users should ensure that sulci in regions of interest in their studies are adequately aligned before proceeding with subsequent analysis. PMID:19796696

  1. Metrication for the Manager.

    ERIC Educational Resources Information Center

    Benedict, John T.

    The scope of this book covers metrication management. It was created to fill the middle management need for condensed, authoritative information about the metrication process and was conceived as a working tool and a prime reference source. Written from a management point of view, it touches on virtually all aspects of metrication and highlights…

  2. Metrics in Career Education.

    ERIC Educational Resources Information Center

    Lindbeck, John R.

    The United States is rapidly becoming a metric nation. Industry, education, business, and government are all studying the issue of metrication to learn how they can prepare for it. The book is designed to help teachers and students in career education programs learn something about metrics. Presented in an easily understood manner, the textbook's…

  3. Endoluminal surface registration for CT colonography using haustral fold matching☆

    PubMed Central

    Hampshire, Thomas; Roth, Holger R.; Helbren, Emma; Plumb, Andrew; Boone, Darren; Slabaugh, Greg; Halligan, Steve; Hawkes, David J.

    2013-01-01

    Computed Tomographic (CT) colonography is a technique used for the detection of bowel cancer or potentially precancerous polyps. The procedure is performed routinely with the patient both prone and supine to differentiate fixed colonic pathology from mobile faecal residue. Matching corresponding locations is difficult and time consuming for radiologists due to colonic deformations that occur during patient repositioning. We propose a novel method to establish correspondence between the two acquisitions automatically. The problem is first simplified by detecting haustral folds using a graph cut method applied to a curvature-based metric applied to a surface mesh generated from segmentation of the colonic lumen. A virtual camera is used to create a set of images that provide a metric for matching pairs of folds between the prone and supine acquisitions. Image patches are generated at the fold positions using depth map renderings of the endoluminal surface and optimised by performing a virtual camera registration over a restricted set of degrees of freedom. The intensity difference between image pairs, along with additional neighbourhood information to enforce geometric constraints over a 2D parameterisation of the 3D space, are used as unary and pair-wise costs respectively, and included in a Markov Random Field (MRF) model to estimate the maximum a posteriori fold labelling assignment. The method achieved fold matching accuracy of 96.0% and 96.1% in patient cases with and without local colonic collapse. Moreover, it improved upon an existing surface-based registration algorithm by providing an initialisation. The set of landmark correspondences is used to non-rigidly transform a 2D source image derived from a conformal mapping process on the 3D endoluminal surface mesh. This achieves full surface correspondence between prone and supine views and can be further refined with an intensity based registration showing a statistically significant improvement (p < 0

  4. Point-to-Volume Registration of Prostate Implants to Ultrasound★

    PubMed Central

    Dehghan, Ehsan; Lee, Junghoon; Fallavollita, Pascal; Kuo, Nathanael; Deguet, Anton; Burdette, E. Clif; Song, Danny; Prince, Jerry L.; Fichtinger, Gabor

    2011-01-01

    Ultrasound-Fluoroscopy fusion is a key step toward intra-operative dosimetry for prostate brachytherapy. We propose a method for intensity-based registration of fluoroscopy to ultrasound that obviates the need for seed segmentation required for seed-based registration. We employ image thresholding and morphological and Gaussian filtering to enhance the image intensity distribution of ultrasound volume. Finally, we find the registration parameters by maximizing a point-to-volume similarity metric. We conducted an experiment on a ground truth phantom and achieved registration error of 0.7±0.2 mm. Our clinical results on 5 patient data sets show excellent visual agreement between the registered seeds and the ultrasound volume with a seed-to-seed registration error of 1.8±0.9 mm. With low registration error, high computational speed and no need for manual seed segmentation, our method is promising for clinical application. PMID:21995080

  5. SU-E-J-122: The CBCT Dose Calculation Using a Patient Specific CBCT Number to Mass Density Conversion Curve Based On a Novel Image Registration and Organ Mapping Method in Head-And-Neck Radiation Therapy

    SciTech Connect

    Zhou, J; Lasio, G; Chen, S; Zhang, B; Langen, K; Prado, K; D’Souza, W; Yi, B; Huang, J

    2015-06-15

    Purpose: To develop a CBCT HU correction method using a patient specific HU to mass density conversion curve based on a novel image registration and organ mapping method for head-and-neck radiation therapy. Methods: There are three steps to generate a patient specific CBCT HU to mass density conversion curve. First, we developed a novel robust image registration method based on sparseness analysis to register the planning CT (PCT) and the CBCT. Second, a novel organ mapping method was developed to transfer the organs at risk (OAR) contours from the PCT to the CBCT and corresponding mean HU values of each OAR were measured in both the PCT and CBCT volumes. Third, a set of PCT and CBCT HU to mass density conversion curves were created based on the mean HU values of OARs and the corresponding mass density of the OAR in the PCT. Then, we compared our proposed conversion curve with the traditional Catphan phantom based CBCT HU to mass density calibration curve. Both curves were input into the treatment planning system (TPS) for dose calculation. Last, the PTV and OAR doses, DVH and dose distributions of CBCT plans are compared to the original treatment plan. Results: One head-and-neck cases which contained a pair of PCT and CBCT was used. The dose differences between the PCT and CBCT plans using the proposed method are −1.33% for the mean PTV, 0.06% for PTV D95%, and −0.56% for the left neck. The dose differences between plans of PCT and CBCT corrected using the CATPhan based method are −4.39% for mean PTV, 4.07% for PTV D95%, and −2.01% for the left neck. Conclusion: The proposed CBCT HU correction method achieves better agreement with the original treatment plan compared to the traditional CATPhan based calibration method.

  6. Metric Education and the Metrics Debate: A Perspective.

    ERIC Educational Resources Information Center

    Chappelet, Jean Loup

    A short history of the use of the metric system is given. The role of education in metrication is discussed. The metric activities of three groups of metrics advocates, the business community, private groups, and government agencies, are described. Arguments advanced by metric opponents are also included. The author compares the metric debate with…

  7. Aerial Terrain Mapping Using Unmanned Aerial Vehicle Approach

    NASA Astrophysics Data System (ADS)

    Tahar, K. N.

    2012-08-01

    This paper looks into the latest achievement in the low-cost Unmanned Aerial Vehicle (UAV) technology in their capacity to map the semi-development areas. The objectives of this study are to establish a new methodology or a new algorithm in image registration during interior orientation process and to determine the accuracy of the photogrammetric products by using UAV images. Recently, UAV technology has been used in several applications such as mapping, agriculture and surveillance. The aim of this study is to scrutinize the usage of UAV to map the semi-development areas. The performance of the low cost UAV mapping study was established on a study area with two image processing methods so that the results could be comparable. A non-metric camera was attached at the bottom of UAV and it was used to capture images at both sites after it went through several calibration steps. Calibration processes were carried out to determine focal length, principal distance, radial lens distortion, tangential lens distortion and affinity. A new method in image registration for a non-metric camera is discussed in this paper as a part of new methodology of this study. This method used the UAV Global Positioning System (GPS) onboard to register the UAV image for interior orientation process. Check points were established randomly at both sites using rapid static Global Positioning System. Ground control points are used for exterior orientation process, and check point is used for accuracy assessment of photogrammetric product. All acquired images were processed in a photogrammetric software. Two methods of image registration were applied in this study, namely, GPS onboard registration and ground control point registration. Both registrations were processed by using photogrammetric software and the result is discussed. Two results were produced in this study, which are the digital orthophoto and the digital terrain model. These results were analyzed by using the root mean square

  8. Metrics That Matter.

    PubMed

    Prentice, Julia C; Frakt, Austin B; Pizer, Steven D

    2016-04-01

    Increasingly, performance metrics are seen as key components for accurately measuring and improving health care value. Disappointment in the ability of chosen metrics to meet these goals is exemplified in a recent Institute of Medicine report that argues for a consensus-building process to determine a simplified set of reliable metrics. Overall health care goals should be defined and then metrics to measure these goals should be considered. If appropriate data for the identified goals are not available, they should be developed. We use examples from our work in the Veterans Health Administration (VHA) on validating waiting time and mental health metrics to highlight other key issues for metric selection and implementation. First, we focus on the need for specification and predictive validation of metrics. Second, we discuss strategies to maintain the fidelity of the data used in performance metrics over time. These strategies include using appropriate incentives and data sources, using composite metrics, and ongoing monitoring. Finally, we discuss the VA's leadership in developing performance metrics through a planned upgrade in its electronic medical record system to collect more comprehensive VHA and non-VHA data, increasing the ability to comprehensively measure outcomes. PMID:26951272

  9. Registration of multi-view apical 3D echocardiography images

    NASA Astrophysics Data System (ADS)

    Mulder, H. W.; van Stralen, M.; van der Zwaan, H. B.; Leung, K. Y. E.; Bosch, J. G.; Pluim, J. P. W.

    2011-03-01

    Real-time three-dimensional echocardiography (RT3DE) is a non-invasive method to visualize the heart. Disadvantageously, it suffers from non-uniform image quality and a limited field of view. Image quality can be improved by fusion of multiple echocardiography images. Successful registration of the images is essential for prosperous fusion. Therefore, this study examines the performance of different methods for intrasubject registration of multi-view apical RT3DE images. A total of 14 data sets was annotated by two observers who indicated the position of the apex and four points on the mitral valve ring. These annotations were used to evaluate registration. Multi-view end-diastolic (ED) as well as end-systolic (ES) images were rigidly registered in a multi-resolution strategy. The performance of single-frame and multi-frame registration was examined. Multi-frame registration optimizes the metric for several time frames simultaneously. Furthermore, the suitability of mutual information (MI) as similarity measure was compared to normalized cross-correlation (NCC). For initialization of the registration, a transformation that describes the probe movement was obtained by manually registering five representative data sets. It was found that multi-frame registration can improve registration results with respect to single-frame registration. Additionally, NCC outperformed MI as similarity measure. If NCC was optimized in a multi-frame registration strategy including ED and ES time frames, the performance of the automatic method was comparable to that of manual registration. In conclusion, automatic registration of RT3DE images performs as good as manual registration. As registration precedes image fusion, this method can contribute to improved quality of echocardiography images.

  10. About Using the Metric System.

    ERIC Educational Resources Information Center

    Illinois State Office of Education, Springfield.

    This booklet contains a brief introduction to the use of the metric system. Topics covered include: (1) what is the metric system; (2) how to think metric; (3) some advantages of the metric system; (4) basics of the metric system; (5) how to measure length, area, volume, mass and temperature the metric way; (6) some simple calculations using…

  11. 3D-2D registration for surgical guidance: effect of projection view angles on registration accuracy

    NASA Astrophysics Data System (ADS)

    Uneri, A.; Otake, Y.; Wang, A. S.; Kleinszig, G.; Vogt, S.; Khanna, A. J.; Siewerdsen, J. H.

    2014-01-01

    An algorithm for intensity-based 3D-2D registration of CT and x-ray projections is evaluated, specifically using single- or dual-projection views to provide 3D localization. The registration framework employs the gradient information similarity metric and covariance matrix adaptation evolution strategy to solve for the patient pose in six degrees of freedom. Registration performance was evaluated in an anthropomorphic phantom and cadaver, using C-arm projection views acquired at angular separation, Δθ, ranging from ˜0°-180° at variable C-arm magnification. Registration accuracy was assessed in terms of 2D projection distance error and 3D target registration error (TRE) and compared to that of an electromagnetic (EM) tracker. The results indicate that angular separation as small as Δθ ˜10°-20° achieved TRE <2 mm with 95% confidence, comparable or superior to that of the EM tracker. The method allows direct registration of preoperative CT and planning data to intraoperative fluoroscopy, providing 3D localization free from conventional limitations associated with external fiducial markers, stereotactic frames, trackers and manual registration.

  12. 3D–2D registration for surgical guidance: effect of projection view angles on registration accuracy

    PubMed Central

    Uneri, A; Otake, Y; Wang, A S; Kleinszig, G; Vogt, S; Khanna, A J; Siewerdsen, J H

    2016-01-01

    An algorithm for intensity-based 3D–2D registration of CT and x-ray projections is evaluated, specifically using single- or dual-projection views to provide 3D localization. The registration framework employs the gradient information similarity metric and covariance matrix adaptation evolution strategy to solve for the patient pose in six degrees of freedom. Registration performance was evaluated in an anthropomorphic phantom and cadaver, using C-arm projection views acquired at angular separation, Δθ, ranging from ~0°–180° at variable C-arm magnification. Registration accuracy was assessed in terms of 2D projection distance error and 3D target registration error (TRE) and compared to that of an electromagnetic (EM) tracker. The results indicate that angular separation as small as Δθ ~10°–20° achieved TRE <2 mm with 95% confidence, comparable or superior to that of the EM tracker. The method allows direct registration of preoperative CT and planning data to intraoperative fluoroscopy, providing 3D localization free from conventional limitations associated with external fiducial markers, stereotactic frames, trackers and manual registration. PMID:24351769

  13. Evaluation of Mail Registration.

    ERIC Educational Resources Information Center

    San Diego Community Coll. District, CA. Research and Planning.

    The San Diego Community College District (SDCCD) implemented mail registration for all continuing students in spring 1986. In fall 1986, a comprehensive evaluation of the registration system was conducted to assess the impact of mail registration on student enrollment, to determine the impact of mailing class schedules to students' homes, to…

  14. Ensemble learning incorporating uncertain registration.

    PubMed

    Simpson, Ivor J A; Woolrich, Mark W; Andersson, Jesper L R; Groves, Adrian R; Schnabel, Julia A

    2013-04-01

    This paper proposes a novel approach for improving the accuracy of statistical prediction methods in spatially normalized analysis. This is achieved by incorporating registration uncertainty into an ensemble learning scheme. A probabilistic registration method is used to estimate a distribution of probable mappings between subject and atlas space. This allows the estimation of the distribution of spatially normalized feature data, e.g., grey matter probability maps. From this distribution, samples are drawn for use as training examples. This allows the creation of multiple predictors, which are subsequently combined using an ensemble learning approach. Furthermore, extra testing samples can be generated to measure the uncertainty of prediction. This is applied to separating subjects with Alzheimer's disease from normal controls using a linear support vector machine on a region of interest in magnetic resonance images of the brain. We show that our proposed method leads to an improvement in discrimination using voxel-based morphometry and deformation tensor-based morphometry over bootstrap aggregating, a common ensemble learning framework. The proposed approach also generates more reasonable soft-classification predictions than bootstrap aggregating. We expect that this approach could be applied to other statistical prediction tasks where registration is important. PMID:23288332

  15. Hypermultiplet metric and D-instantons

    NASA Astrophysics Data System (ADS)

    Alexandrov, Sergei; Banerjee, Sibasish

    2015-02-01

    We use the twistorial construction of D-instantons in Calabi-Yau compactifications of type II string theory to compute an explicit expression for the metric on the hypermultiplet moduli space affected by these non-perturbative corrections. In this way we obtain an exact quaternion-Kähler metric which is a non-trivial deformation of the local c-map. In the four-dimensional case corresponding to the universal hypermultiplet, our metric fits the Tod ansatz and provides an exact solution of the continuous Toda equation. We also analyze the fate of the curvature singularity of the perturbative metric by deriving an S-duality invariant equation which determines the singularity hypersurface after inclusion of the D(-1)-instanton effects.

  16. SU-E-J-100: The Combination of Deformable Image Registration and Regions-Of-Interest Mapping Technique to Accomplish Accurate Dose Calculation On Cone Beam Computed Tomography for Esophageal Cancer

    SciTech Connect

    Huang, B-T; Lu, J-Y

    2015-06-15

    Purpose: We introduce a new method combined with the deformable image registration (DIR) and regions-of-interest mapping (ROIM) technique to accurately calculate dose on daily CBCT for esophageal cancer. Methods: Patients suffered from esophageal cancer were enrolled in the study. Prescription was set to 66 Gy/30 F and 54 Gy/30 F to the primary tumor (PTV66) and subclinical disease (PTV54) . Planning CT (pCT) were segmented into 8 substructures in terms of their differences in physical density, such as gross target volume (GTV), venae cava superior (SVC), aorta, heart, spinal cord, lung, muscle and bones. The pCT and its substructures were transferred to the MIM software to readout their mean HU values. Afterwards, a deformable planning CT to daily KV-CBCT image registration method was then utilized to acquire a new structure set on CBCT. The newly generated structures on CBCT were then transferred back to the treatment planning system (TPS) and its HU information were overridden manually with mean HU values obtained from pCT. Finally, the treatment plan was projected onto the CBCT images with the same beam arrangements and monitor units (MUs) to accomplish dose calculation. Planning target volume (PTV) and organs at risk (OARs) from both of the pCT and CBCT were compared to evaluate the dose calculation accuracy. Results: It was found that the dose distribution in the CBCT showed little differences compared to the pCT, regardless of whether PTV or OARs were concerned. Specifically, dose variation in GTV, PTV54, PTV66, SVC, lung and heart were within 0.1%. The maximum dose variation was presented in the spinal cord, which was up to 2.7% dose difference. Conclusion: The proposed method combined with DIR and ROIM technique to accurately calculate dose distribution on CBCT for esophageal cancer is feasible.

  17. Metric Education Evaluation Package.

    ERIC Educational Resources Information Center

    Kansky, Bob; And Others

    This document was developed out of a need for a complete, carefully designed set of evaluation instruments and procedures that might be applied in metric inservice programs across the nation. Components of this package were prepared in such a way as to permit local adaptation to the evaluation of a broad spectrum of metric education activities.…

  18. Metrics for Cosmetology.

    ERIC Educational Resources Information Center

    Cooper, Gloria S., Ed.; Magisos, Joel H., Ed.

    Designed to meet the job-related metric measurement needs of cosmetology students, this instructional package on cosmetology is part of a set of 55 packages for metric instruction in different occupations. The package is intended for students who already know the occupational terminology, measurement terms, and tools currently in use. Each of the…

  19. Surveillance Metrics Sensitivity Study

    SciTech Connect

    Bierbaum, R; Hamada, M; Robertson, A

    2011-11-01

    In September of 2009, a Tri-Lab team was formed to develop a set of metrics relating to the NNSA nuclear weapon surveillance program. The purpose of the metrics was to develop a more quantitative and/or qualitative metric(s) describing the results of realized or non-realized surveillance activities on our confidence in reporting reliability and assessing the stockpile. As a part of this effort, a statistical sub-team investigated various techniques and developed a complementary set of statistical metrics that could serve as a foundation for characterizing aspects of meeting the surveillance program objectives. The metrics are a combination of tolerance limit calculations and power calculations, intending to answer level-of-confidence type questions with respect to the ability to detect certain undesirable behaviors (catastrophic defects, margin insufficiency defects, and deviations from a model). Note that the metrics are not intended to gauge product performance but instead the adequacy of surveillance. This report gives a short description of four metrics types that were explored and the results of a sensitivity study conducted to investigate their behavior for various inputs. The results of the sensitivity study can be used to set the risk parameters that specify the level of stockpile problem that the surveillance program should be addressing.

  20. Surveillance metrics sensitivity study.

    SciTech Connect

    Hamada, Michael S.; Bierbaum, Rene Lynn; Robertson, Alix A.

    2011-09-01

    In September of 2009, a Tri-Lab team was formed to develop a set of metrics relating to the NNSA nuclear weapon surveillance program. The purpose of the metrics was to develop a more quantitative and/or qualitative metric(s) describing the results of realized or non-realized surveillance activities on our confidence in reporting reliability and assessing the stockpile. As a part of this effort, a statistical sub-team investigated various techniques and developed a complementary set of statistical metrics that could serve as a foundation for characterizing aspects of meeting the surveillance program objectives. The metrics are a combination of tolerance limit calculations and power calculations, intending to answer level-of-confidence type questions with respect to the ability to detect certain undesirable behaviors (catastrophic defects, margin insufficiency defects, and deviations from a model). Note that the metrics are not intended to gauge product performance but instead the adequacy of surveillance. This report gives a short description of four metrics types that were explored and the results of a sensitivity study conducted to investigate their behavior for various inputs. The results of the sensitivity study can be used to set the risk parameters that specify the level of stockpile problem that the surveillance program should be addressing.

  1. Arbitrary Metrics in Psychology

    ERIC Educational Resources Information Center

    Blanton, Hart; Jaccard, James

    2006-01-01

    Many psychological tests have arbitrary metrics but are appropriate for testing psychological theories. Metric arbitrariness is a concern, however, when researchers wish to draw inferences about the true, absolute standing of a group or individual on the latent psychological dimension being measured. The authors illustrate this in the context of 2…

  2. Metrics for Food Distribution.

    ERIC Educational Resources Information Center

    Cooper, Gloria S., Ed.; Magisos, Joel H., Ed.

    Designed to meet the job-related metric measurement needs of students interested in food distribution, this instructional package is one of five for the marketing and distribution cluster, part of a set of 55 packages for metric instruction in different occupations. The package is intended for students who already know the occupational…

  3. Metrics for Transportation.

    ERIC Educational Resources Information Center

    Cooper, Gloria S., Ed.; Magisos, Joel H., Ed.

    Designed to meet the job-related metric measurement needs of students interested in transportation, this instructional package is one of five for the marketing and distribution cluster, part of a set of 55 packages for metric instruction in different occupations. The package is intended for students who already know the occupational terminology,…

  4. Introduction to Metrics.

    ERIC Educational Resources Information Center

    Edgecomb, Philip L.; Shapiro, Marion

    Addressed to vocational, or academic middle or high school students, this book reviews mathematics fundamentals using metric units of measurement. It utilizes a common-sense approach to the degree of accuracy needed in solving actual trade and every-day problems. Stress is placed on reading off metric measurements from a ruler or tape, and on…

  5. Metrics for Agricultural Mechanics.

    ERIC Educational Resources Information Center

    Cooper, Gloria S., Ed.; Magisos, Joel H., Ed.

    Designed to meet the job-related metric measurement needs of agricultural mechanics students, this instructional package is one of four for the agribusiness and natural resources occupations cluster, part of a set of 55 packages for metric instruction in different occupations. The package is intended for students who already know the occupational…

  6. Bayesian technique for image classifying registration.

    PubMed

    Hachama, Mohamed; Desolneux, Agnès; Richard, Frédéric J P

    2012-09-01

    In this paper, we address a complex image registration issue arising while the dependencies between intensities of images to be registered are not spatially homogeneous. Such a situation is frequently encountered in medical imaging when a pathology present in one of the images modifies locally intensity dependencies observed on normal tissues. Usual image registration models, which are based on a single global intensity similarity criterion, fail to register such images, as they are blind to local deviations of intensity dependencies. Such a limitation is also encountered in contrast-enhanced images where there exist multiple pixel classes having different properties of contrast agent absorption. In this paper, we propose a new model in which the similarity criterion is adapted locally to images by classification of image intensity dependencies. Defined in a Bayesian framework, the similarity criterion is a mixture of probability distributions describing dependencies on two classes. The model also includes a class map which locates pixels of the two classes and weighs the two mixture components. The registration problem is formulated both as an energy minimization problem and as a maximum a posteriori estimation problem. It is solved using a gradient descent algorithm. In the problem formulation and resolution, the image deformation and the class map are estimated simultaneously, leading to an original combination of registration and classification that we call image classifying registration. Whenever sufficient information about class location is available in applications, the registration can also be performed on its own by fixing a given class map. Finally, we illustrate the interest of our model on two real applications from medical imaging: template-based segmentation of contrast-enhanced images and lesion detection in mammograms. We also conduct an evaluation of our model on simulated medical data and show its ability to take into account spatial variations

  7. Research on land registration procedure ontology of China

    NASA Astrophysics Data System (ADS)

    Zhao, Zhongjun; Du, Qingyun; Zhang, Weiwei; Liu, Tao

    2009-10-01

    Land registration is public act which is to record the state-owned land use right, collective land ownership, collective land use right and land mortgage, servitude, as well as other land rights required the registration according to laws and regulations onto land registering books. Land registration is one of the important government affairs , so it is very important to standardize, optimize and humanize the process of land registration. The management works of organization are realized through a variety of workflows. Process knowledge is in essence a kind of methodology knowledge and a system which including the core and the relational knowledge. In this paper, the ontology is introduced into the field of land registration and management, trying to optimize the flow of land registration, to promote the automation-building and intelligent Service of land registration affairs, to provide humanized and intelligent service for multi-types of users . This paper tries to build land registration procedure ontology by defining the land registration procedure ontology's key concepts which represent the kinds of processes of land registration and mapping the kinds of processes to OWL-S. The land registration procedure ontology shall be the start and the basis of the Web service.

  8. An image registration pipeline for analysis of transsynaptic tracing in mice

    NASA Astrophysics Data System (ADS)

    Kutten, Kwame S.; Eacker, Stephen M.; Dawson, Valina L.; Dawson, Ted M.; Ratnanather, Tilak; Miller, Michael I.

    2016-03-01

    Parkinson's Disease (PD) is a movement disorder characterized by the loss of dopamine neurons in the substantia nigra pars compacta (SNpc) and norepinephrine neurons in the locus coeruleus (LC). To further understand the pathophysiology of PD, the input neurons of the SNpc and LC will be transsynapticly traced in mice using a fluorescent recombinant rabies virus (RbV) and imaged using serial two-photon tomography (STP). A mapping between these images and a brain atlas must be found to accurately determine the locations of input neurons in the brain. Therefore a registration pipeline to align the Allen Reference Atlas (ARA) to these types of images was developed. In the preprocessing step, a brain mask was generated from the transsynaptic tracing images using simple morphological operators. The masks were then registered to the ARA using Large Deformation Diffeomorphic Metric Mapping (LDDMM), an algorithm specialized for calculating anatomically realistic transforms between images. The pipeline was then tested on an STP scan of a mouse brain labeled by an adeno-associated virus (AAV). Based on qualitative evaluation of the registration results, the pipeline was found to be sufficient for use with transsynaptic RbV tracing.

  9. Metrication - Our Responsibility?

    ERIC Educational Resources Information Center

    Kroner, Klaus E.

    1972-01-01

    The metric system will soon be adopted in the United States. Engineering college educators can play a major role in this revision. Various suggestions are listed for teachers, authors and others. (PS)

  10. A metric for success

    NASA Astrophysics Data System (ADS)

    Carver, Gary P.

    1994-05-01

    The federal agencies are working with industry to ease adoption of the metric system. The goal is to help U.S. industry compete more successfully in the global marketplace, increase exports, and create new jobs. The strategy is to use federal procurement, financial assistance, and other business-related activities to encourage voluntary conversion. Based upon the positive experiences of firms and industries that have converted, federal agencies have concluded that metric use will yield long-term benefits that are beyond any one-time costs or inconveniences. It may be time for additional steps to move the Nation out of its dual-system comfort zone and continue to progress toward metrication. This report includes 'Metric Highlights in U.S. History'.

  11. An Arithmetic Metric

    ERIC Educational Resources Information Center

    Dominici, Diego

    2011-01-01

    This work introduces a distance between natural numbers not based on their position on the real line but on their arithmetic properties. We prove some metric properties of this distance and consider a possible extension.

  12. Sustainability Indicators and Metrics

    EPA Science Inventory

    Sustainability is about preserving human existence. Indicators and metrics are absolutely necessary to provide at least a semi-quantitative assessment of progress towards or away from sustainability. Otherwise, it becomes impossible to objectively assess whether progress is bei...

  13. Evaluation of Thematic Mapper interband registration and noise characteristics

    NASA Technical Reports Server (NTRS)

    Wrigley, R. C.; Hlavka, C. A.; Card, D. H.; Buis, J. S.

    1985-01-01

    It is pointed out that the Thematic Mapper (TM) instruments aboard the Landsat-4 and Landsat-5 spacecraft have provided the first digital imagery of the earth's surface with a resolution sufficient to distinguish cultural features easily. The present paper provides a description of the results of studies designed to investigate the band-to-band registration, geodetic registration to a map base, and periodic noise. In the eight TM scenes analyzed, the band-to-band registration accuracy was high even before correction, and the correction for the shift between focal planes brought all bands into registration according to tight specifications.

  14. Registration and rectification needs of geology

    NASA Technical Reports Server (NTRS)

    Chavez, P. S., Jr.

    1982-01-01

    Geologic applications of remotely sensed imaging encompass five areas of interest. The five areas include: (1) enhancement and analysis of individual images; (2) work with small area mosaics of imagery which have been map projection rectified to individual quadrangles; (3) development of large area mosaics of multiple images for several counties or states; (4) registration of multitemporal images; and (5) data integration from several sensors and map sources. Examples for each of these types of applications are summarized.

  15. Image Registration Workshop Proceedings

    NASA Technical Reports Server (NTRS)

    LeMoigne, Jacqueline (Editor)

    1997-01-01

    Automatic image registration has often been considered as a preliminary step for higher-level processing, such as object recognition or data fusion. But with the unprecedented amounts of data which are being and will continue to be generated by newly developed sensors, the very topic of automatic image registration has become and important research topic. This workshop presents a collection of very high quality work which has been grouped in four main areas: (1) theoretical aspects of image registration; (2) applications to satellite imagery; (3) applications to medical imagery; and (4) image registration for computer vision research.

  16. Longitudinal brain MRI analysis with uncertain registration.

    PubMed

    Simpson, Ivor J A; Woolrich, Mark W; Groves, Adrian R; Schnabel, Julia A

    2011-01-01

    In this paper we propose a novel approach for incorporating measures of spatial uncertainty, which are derived from non-rigid registration, into spatially normalised statistics. Current approaches to spatially normalised statistical analysis use point-estimates of the registration parameters. This is limiting as the registration will rarely be completely accurate, and therefore data smoothing is often used to compensate for the uncertainty of the mapping. We derive localised measurements of spatial uncertainty from a probabilistic registration framework, which provides a principled approach to image smoothing. We evaluate our method using longitudinal deformation features from a set of MR brain images acquired from the Alzheimer's Disease Neuroimaging Initiative. These images are spatially normalised using our probabilistic registration algorithm. The spatially normalised longitudinal features are adaptively smoothed according to the registration uncertainty. The proposed adaptive smoothing shows improved classification results, (84% correct Alzheimer's Disease vs. controls), over either not smoothing (79.6%), or using a Gaussian filter with sigma = 2mm (78.8%). PMID:21995084

  17. Intensity-Based Registration for Lung Motion Estimation

    NASA Astrophysics Data System (ADS)

    Cao, Kunlin; Ding, Kai; Amelon, Ryan E.; Du, Kaifang; Reinhardt, Joseph M.; Raghavan, Madhavan L.; Christensen, Gary E.

    Image registration plays an important role within pulmonary image analysis. The task of registration is to find the spatial mapping that brings two images into alignment. Registration algorithms designed for matching 4D lung scans or two 3D scans acquired at different inflation levels can catch the temporal changes in position and shape of the region of interest. Accurate registration is critical to post-analysis of lung mechanics and motion estimation. In this chapter, we discuss lung-specific adaptations of intensity-based registration methods for 3D/4D lung images and review approaches for assessing registration accuracy. Then we introduce methods for estimating tissue motion and studying lung mechanics. Finally, we discuss methods for assessing and quantifying specific volume change, specific ventilation, strain/ stretch information and lobar sliding.

  18. MRI Signal Intensity Based B-Spline Nonrigid Registration for Pre- and Intraoperative Imaging During Prostate Brachytherapy

    PubMed Central

    Oguro, Sota; Tokuda, Junichi; Elhawary, Haytham; Haker, Steven; Kikinis, Ron; Tempany, Clare M.C.; Hata, Nobuhiko

    2009-01-01

    Purpose To apply an intensity-based nonrigid registration algorithm to MRI-guided prostate brachytherapy clinical data and to assess its accuracy. Materials and Methods A nonrigid registration of preoperative MRI to intraoperative MRI images was carried out in 16 cases using a Basis-Spline algorithm in a retrospective manner. The registration was assessed qualitatively by experts’ visual inspection and quantitatively by measuring the Dice similarity coefficient (DSC) for total gland (TG), central gland (CG), and peripheral zone (PZ), the mutual information (MI) metric, and the fiducial registration error (FRE) between corresponding anatomical landmarks for both the nonrigid and a rigid registration method. Results All 16 cases were successfully registered in less than 5 min. After the nonrigid registration, DSC values for TG, CG, PZ were 0.91, 0.89, 0.79, respectively, the MI metric was −0.19 ± 0.07 and FRE presented a value of 2.3 ± 1.8 mm. All the metrics were significantly better than in the case of rigid registration, as determined by one-sided t-tests. Conclusion The intensity-based nonrigid registration method using clinical data was demonstrated to be feasible and showed statistically improved metrics when compare to only rigid registration. The method is a valuable tool to integrate pre- and intraoperative images for brachytherapy. PMID:19856437

  19. User Registration Systems for Distributed Systems

    NASA Astrophysics Data System (ADS)

    Murphy, K. J.; Cechini, M.; Pilone, D.; Mitchell, A.

    2010-12-01

    As NASA’s Earth Observing System Data and Information System (EOSDIS) systems have evolved over the years, most of the EOSDIS data are now available to users via anonymous on-line access. Although the changes have improved the dissemination efficiency of earth science data, the anonymous access has made it difficult to characterize users, capture metrics on the value of EOSDIS and provide customized services that benefit users. As the number of web-based applications continues to grow, data centers and application providers have implemented their own user registration systems and provided new tools and interfaces for their registered users. This has led to the creation of independent registration systems for accessing data and interacting with online tools and services. The user profile information maintained at each of these registration systems is not consistent and the registration enforcement varies by system as well. This problem is in no way unique to EOSDIS and represents a general challenge to the distributed computing community. In a study done in 2007(http://www2007.org/papers/paper620.pd), the average user has approximately 7 passwords for about 25 accounts and enters a password 8 times a day. These numbers have only increased in the last three years. To try and address this, a number of solutions have been offered including Single Sign-On solutions using a common backend like Microsoft Active Directory or an LDAP server, trust based identity providers like OpenID, and various forms of authorization delegation like OAuth or SAML/XACML. This talk discusses the differences between authentication and authorization, the state of the more popular user registration solutions available for distributed use, and some of the technical and policy drivers that need to be considered when incorporating a user registration system into your application.

  20. Successful Experiences in Teaching Metric.

    ERIC Educational Resources Information Center

    Odom, Jeffrey V., Ed.

    In this publication are presentations on specific experiences in teaching metrics, made at a National Bureau of Standards conference. Ideas of value to teachers and administrators are described in reports on: SI units of measure; principles and practices of teaching metric; metric and the school librarian; teaching metric through television and…

  1. Towards a physics on fractals: Differential vector calculus in three-dimensional continuum with fractal metric

    NASA Astrophysics Data System (ADS)

    Balankin, Alexander S.; Bory-Reyes, Juan; Shapiro, Michael

    2016-02-01

    One way to deal with physical problems on nowhere differentiable fractals is the mapping of these problems into the corresponding problems for continuum with a proper fractal metric. On this way different definitions of the fractal metric were suggested to account for the essential fractal features. In this work we develop the metric differential vector calculus in a three-dimensional continuum with a non-Euclidean metric. The metric differential forms and Laplacian are introduced, fundamental identities for metric differential operators are established and integral theorems are proved by employing the metric version of the quaternionic analysis for the Moisil-Teodoresco operator, which has been introduced and partially developed in this paper. The relations between the metric and conventional operators are revealed. It should be emphasized that the metric vector calculus developed in this work provides a comprehensive mathematical formalism for the continuum with any suitable definition of fractal metric. This offers a novel tool to study physics on fractals.

  2. Voter Registration and Canvassing.

    ERIC Educational Resources Information Center

    Institute for Political/Legal Education, Sewell, NJ.

    Detailed procedures for community voter registration surveys to be conducted by high school students are presented. Methods for organizational structure, selection of canvassing districts, conducting the survey, processing the data, and initiating a registration drive are outlined. Student personnel include a general coordinator, a field staff to…

  3. Single- and multimodal subvoxel registration of dissimilar medical images using robust similarity measures

    NASA Astrophysics Data System (ADS)

    Nikou, Christophoros; Heitz, Fabrice; Armspach, Jean-Paul; Namer, Izzie-Jacques

    1998-06-01

    Although a large variety of image registration methods have been described in the literature, only a few approaches have attempted to address the rigid registration of medical images showing gross dissimilarities (due for instance to lesion evolution). In the present paper, we develop driven registration algorithms, relying on robust pixel similarity metrics, that enable an accurate (subvoxel) rigid registration of dissimilar single or multimodal 2D/3D images. In the proposed approach, gross dissimilarities are handled by considering similarity measures related to robust M-estimators. A `soft redescending' estimator (the Geman- McClure p-function) has been adopted to reject gross image dissimilarities during the registration. The registration parameters are estimated using a top down stochastic multigrid relaxation algorithm. Thanks to the stochastic multigrid strategy, the registration is not affected by local minima in the objective function and a manual initialization near the optimal solution is not necessary. The proposed robust similarity metrics compare favorably to the most popular standard similarity metrics, on patient image pairs showing gross dissimilarities. Two case studies are considered: the registration of MR/MR and MR/SPECT image volumes of patients suffering from multiple sclerosis and epilepsy.

  4. Cyber threat metrics.

    SciTech Connect

    Frye, Jason Neal; Veitch, Cynthia K.; Mateski, Mark Elliot; Michalski, John T.; Harris, James Mark; Trevino, Cassandra M.; Maruoka, Scott

    2012-03-01

    Threats are generally much easier to list than to describe, and much easier to describe than to measure. As a result, many organizations list threats. Fewer describe them in useful terms, and still fewer measure them in meaningful ways. This is particularly true in the dynamic and nebulous domain of cyber threats - a domain that tends to resist easy measurement and, in some cases, appears to defy any measurement. We believe the problem is tractable. In this report we describe threat metrics and models for characterizing threats consistently and unambiguously. The purpose of this report is to support the Operational Threat Assessment (OTA) phase of risk and vulnerability assessment. To this end, we focus on the task of characterizing cyber threats using consistent threat metrics and models. In particular, we address threat metrics and models for describing malicious cyber threats to US FCEB agencies and systems.

  5. Testing, Requirements, and Metrics

    NASA Technical Reports Server (NTRS)

    Rosenberg, Linda; Hyatt, Larry; Hammer, Theodore F.; Huffman, Lenore; Wilson, William

    1998-01-01

    The criticality of correct, complete, testable requirements is a fundamental tenet of software engineering. Also critical is complete requirements based testing of the final product. Modern tools for managing requirements allow new metrics to be used in support of both of these critical processes. Using these tools, potential problems with the quality of the requirements and the test plan can be identified early in the life cycle. Some of these quality factors include: ambiguous or incomplete requirements, poorly designed requirements databases, excessive or insufficient test cases, and incomplete linkage of tests to requirements. This paper discusses how metrics can be used to evaluate the quality of the requirements and test to avoid problems later. Requirements management and requirements based testing have always been critical in the implementation of high quality software systems. Recently, automated tools have become available to support requirements management. At NASA's Goddard Space Flight Center (GSFC), automated requirements management tools are being used on several large projects. The use of these tools opens the door to innovative uses of metrics in characterizing test plan quality and assessing overall testing risks. In support of these projects, the Software Assurance Technology Center (SATC) is working to develop and apply a metrics program that utilizes the information now available through the application of requirements management tools. Metrics based on this information provides real-time insight into the testing of requirements and these metrics assist the Project Quality Office in its testing oversight role. This paper discusses three facets of the SATC's efforts to evaluate the quality of the requirements and test plan early in the life cycle, thus preventing costly errors and time delays later.

  6. Colon flattening using heat diffusion Riemannian metric.

    PubMed

    Gurijala, Krishna Chaitanya; Shi, Rui; Zeng, Wei; Gu, Xianfeng; Kaufman, Arie

    2013-12-01

    We propose a new colon flattening algorithm that is efficient, shape-preserving, and robust to topological noise. Unlike previous approaches, which require a mandatory topological denoising to remove fake handles, our algorithm directly flattens the colon surface without any denoising. In our method, we replace the original Euclidean metric of the colon surface with a heat diffusion metric that is insensitive to topological noise. Using this heat diffusion metric, we then solve a Laplacian equation followed by an integration step to compute the final flattening. We demonstrate that our method is shape-preserving and the shape of the polyps are well preserved. The flattened colon also provides an efficient way to enhance the navigation and inspection in virtual colonoscopy. We further show how the existing colon registration pipeline is made more robust by using our colon flattening. We have tested our method on several colon wall surfaces and the experimental results demonstrate the robustness and the efficiency of our method. PMID:24051852

  7. GPU accelerated registration of a statistical shape model of the lumbar spine to 3D ultrasound images

    NASA Astrophysics Data System (ADS)

    Khallaghi, Siavash; Abolmaesumi, Purang; Gong, Ren Hui; Chen, Elvis; Gill, Sean; Boisvert, Jonathan; Pichora, David; Borschneck, Dan; Fichtinger, Gabor; Mousavi, Parvin

    2011-03-01

    We present a parallel implementation of a statistical shape model registration to 3D ultrasound images of the lumbar vertebrae (L2-L4). Covariance Matrix Adaptation Evolution Strategy optimization technique, along with Linear Correlation of Linear Combination similarity metric have been used, to improve the robustness and capture range of the registration approach. Instantiation and ultrasound simulation have been implemented on a graphics processing unit for a faster registration. Phantom studies show a mean target registration error of 3.2 mm, while 80% of all the cases yield target registration error of below 3.5 mm.

  8. Measurable Control System Security through Ideal Driven Technical Metrics

    SciTech Connect

    Miles McQueen; Wayne Boyer; Sean McBride; Marie Farrar; Zachary Tudor

    2008-01-01

    The Department of Homeland Security National Cyber Security Division supported development of a small set of security ideals as a framework to establish measurable control systems security. Based on these ideals, a draft set of proposed technical metrics was developed to allow control systems owner-operators to track improvements or degradations in their individual control systems security posture. The technical metrics development effort included review and evaluation of over thirty metrics-related documents. On the bases of complexity, ambiguity, or misleading and distorting effects the metrics identified during the reviews were determined to be weaker than necessary to aid defense against the myriad threats posed by cyber-terrorism to human safety, as well as to economic prosperity. Using the results of our metrics review and the set of security ideals as a starting point for metrics development, we identified thirteen potential technical metrics - with at least one metric supporting each ideal. Two case study applications of the ideals and thirteen metrics to control systems were then performed to establish potential difficulties in applying both the ideals and the metrics. The case studies resulted in no changes to the ideals, and only a few deletions and refinements to the thirteen potential metrics. This led to a final proposed set of ten core technical metrics. To further validate the security ideals, the modifications made to the original thirteen potential metrics, and the final proposed set of ten core metrics, seven separate control systems security assessments performed over the past three years were reviewed for findings and recommended mitigations. These findings and mitigations were then mapped to the security ideals and metrics to assess gaps in their coverage. The mappings indicated that there are no gaps in the security ideals and that the ten core technical metrics provide significant coverage of standard security issues with 87% coverage. Based

  9. Overview of metrics and their correlation patterns for multiple-metric topology analysis on heterogeneous graph ensembles

    NASA Astrophysics Data System (ADS)

    Bounova, Gergana; de Weck, Olivier

    2012-01-01

    This study is an overview of network topology metrics and a computational approach to analyzing graph topology via multiple-metric analysis on graph ensembles. The paper cautions against studying single metrics or combining disparate graph ensembles from different domains to extract global patterns. This is because there often exists considerable diversity among graphs that share any given topology metric, patterns vary depending on the underlying graph construction model, and many real data sets are not actual statistical ensembles. As real data examples, we present five airline ensembles, comprising temporal snapshots of networks of similar topology. Wikipedia language networks are shown as an example of a nontemporal ensemble. General patterns in metric correlations, as well as exceptions, are discussed by representing the data sets via hierarchically clustered correlation heat maps. Most topology metrics are not independent and their correlation patterns vary across ensembles. In general, density-related metrics and graph distance-based metrics cluster and the two groups are orthogonal to each other. Metrics based on degree-degree correlations have the highest variance across ensembles and cluster the different data sets on par with principal component analysis. Namely, the degree correlation, the s metric, their elasticities, and the rich club moments appear to be most useful in distinguishing topologies.

  10. Metric Style Guide.

    ERIC Educational Resources Information Center

    Canadian Council of Ministers of Education, Toronto (Ontario).

    This guide was designed to provide a measure of uniformity across Canada with respect to metric terminology and symbolism, and is designed to enable users to understand and apply Systeme International d'Unites (SI) to everyday life with ease and confidence. This document was written with the intent of being helpful to the greatest number of…

  11. Toll Gate Metrication Project

    ERIC Educational Resources Information Center

    Izzi, John

    1974-01-01

    The project director of the Toll Gate Metrication Project describes the project as the first structured United States public school educational experiment in implementing change toward the adoption of the International System of Units. He believes the change will simplify, rather than complicate, the educational task. (AG)

  12. Metrics and Sports.

    ERIC Educational Resources Information Center

    National Collegiate Athletic Association, Shawnee Mission, KS.

    Designed as a guide to aid the National Collegiate Athletic Association membership and others who must relate measurement of distances, weights, and volumes to athletic activity, this document presents diagrams of performance areas with measurements delineated in both imperial and metric terms. Illustrations are given for baseball, basketball,…

  13. Engineering performance metrics

    SciTech Connect

    DeLozier, R. ); Snyder, N. )

    1993-03-31

    Implementation of a Total Quality Management (TQM) approach to engineering work required the development of a system of metrics which would serve as a meaningful msinagement tool for evaluating effectiveness in accomplishing project objectives and in achieving improved customer satisfaction. A team effort was chartered with the goal of developing a system of engineering performance metrics which would measure customer satisfaction, quality, cost effectiveness, and timeliness. The approach to developing this system involved normal systems design phases including, conceptual design, detailed design, implementation, and integration. The lessons teamed from this effort will be explored in this paper. These lessons teamed may provide a starting point for other large engineering organizations seeking to institute a performance measurement system accomplishing project objectives and in achieving improved customer satisfaction. To facilitate this effort, a team was chartered to assist in the development of the metrics system. This team, consisting of customers and Engineering staff members, was utilized to ensure that the needs and views of the customers were considered in the development of performance measurements. The development of a system of metrics is no different than the development of any type of system. It includes the steps of defining performance measurement requirements, measurement process conceptual design, performance measurement and reporting system detailed design, and system implementation and integration.

  14. Engineering performance metrics

    NASA Astrophysics Data System (ADS)

    Delozier, R.; Snyder, N.

    1993-03-01

    Implementation of a Total Quality Management (TQM) approach to engineering work required the development of a system of metrics which would serve as a meaningful management tool for evaluating effectiveness in accomplishing project objectives and in achieving improved customer satisfaction. A team effort was chartered with the goal of developing a system of engineering performance metrics which would measure customer satisfaction, quality, cost effectiveness, and timeliness. The approach to developing this system involved normal systems design phases including, conceptual design, detailed design, implementation, and integration. The lessons teamed from this effort will be explored in this paper. These lessons learned may provide a starting point for other large engineering organizations seeking to institute a performance measurement system accomplishing project objectives and in achieving improved customer satisfaction. To facilitate this effort, a team was chartered to assist in the development of the metrics system. This team, consisting of customers and Engineering staff members, was utilized to ensure that the needs and views of the customers were considered in the development of performance measurements. The development of a system of metrics is no different than the development of any type of system. It includes the steps of defining performance measurement requirements, measurement process conceptual design, performance measurement and reporting system detailed design, and system implementation and integration.

  15. Metrics of Scholarly Impact

    ERIC Educational Resources Information Center

    Cacioppo, John T.; Cacioppo, Stephanie

    2012-01-01

    Ruscio and colleagues (Ruscio, Seaman, D'Oriano, Stremlo, & Mahalchik, this issue) provide a thoughtful empirical analysis of 22 different measures of individual scholarly impact. The simplest metric is number of publications, which Simonton (1997) found to be a reasonable predictor of career trajectories. Although the assessment of the scholarly…

  16. Stochastic inverse consistency in medical image registration.

    PubMed

    Yeung, Sai Kit; Shi, Pengcheng

    2005-01-01

    An essential goal in medical image registration is, the forward and reverse mapping matrices should be inverse to each other, i.e., inverse consistency. Conventional approaches enforce consistency in deterministic fashions, through incorporation of sub-objective cost function to impose source-destination symmetric property during the registration process. Assuming that the initial forward and reverse matching matrices have been computed and used as the inputs to our system, this paper presents a stochastic framework which yields perfect inverse consistency with the simultaneous considerations of the errors underneath the registration matrices and the imperfectness of the consistent constraint. An iterative generalized total least square (GTLS) strategy has been developed such that the inverse consistency is optimally imposed. PMID:16685959

  17. Software Quality Assurance Metrics

    NASA Technical Reports Server (NTRS)

    McRae, Kalindra A.

    2004-01-01

    Software Quality Assurance (SQA) is a planned and systematic set of activities that ensures conformance of software life cycle processes and products conform to requirements, standards and procedures. In software development, software quality means meeting requirements and a degree of excellence and refinement of a project or product. Software Quality is a set of attributes of a software product by which its quality is described and evaluated. The set of attributes includes functionality, reliability, usability, efficiency, maintainability, and portability. Software Metrics help us understand the technical process that is used to develop a product. The process is measured to improve it and the product is measured to increase quality throughout the life cycle of software. Software Metrics are measurements of the quality of software. Software is measured to indicate the quality of the product, to assess the productivity of the people who produce the product, to assess the benefits derived from new software engineering methods and tools, to form a baseline for estimation, and to help justify requests for new tools or additional training. Any part of the software development can be measured. If Software Metrics are implemented in software development, it can save time, money, and allow the organization to identify the caused of defects which have the greatest effect on software development. The summer of 2004, I worked with Cynthia Calhoun and Frank Robinson in the Software Assurance/Risk Management department. My task was to research and collect, compile, and analyze SQA Metrics that have been used in other projects that are not currently being used by the SA team and report them to the Software Assurance team to see if any metrics can be implemented in their software assurance life cycle process.

  18. Smartphone app speeds registration.

    PubMed

    2011-03-01

    Two Denver area EDs have entered the digital world with the use of a mobile application that allows patients to pre-register before coming to the ED. Patients can use their smart phones to determine if they need to go to the ED and which one is closest. The ED registration desk receives the pre-registration form, which provides basic information, via fax. Once the information is received, registration notifies the charge nurse so the ED can prepare to receive the patient. PMID:21449510

  19. 21 CFR 710.8 - Misbranding by reference to registration or to registration number.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... HUMAN SERVICES (CONTINUED) COSMETICS VOLUNTARY REGISTRATION OF COSMETIC PRODUCT ESTABLISHMENTS § 710.8 Misbranding by reference to registration or to registration number. Registration of a cosmetic...

  20. 21 CFR 710.8 - Misbranding by reference to registration or to registration number.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... HUMAN SERVICES (CONTINUED) COSMETICS VOLUNTARY REGISTRATION OF COSMETIC PRODUCT ESTABLISHMENTS § 710.8 Misbranding by reference to registration or to registration number. Registration of a cosmetic...

  1. 21 CFR 710.8 - Misbranding by reference to registration or to registration number.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... HUMAN SERVICES (CONTINUED) COSMETICS VOLUNTARY REGISTRATION OF COSMETIC PRODUCT ESTABLISHMENTS § 710.8 Misbranding by reference to registration or to registration number. Registration of a cosmetic...

  2. 21 CFR 710.8 - Misbranding by reference to registration or to registration number.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... HUMAN SERVICES (CONTINUED) COSMETICS VOLUNTARY REGISTRATION OF COSMETIC PRODUCT ESTABLISHMENTS § 710.8 Misbranding by reference to registration or to registration number. Registration of a cosmetic...

  3. 21 CFR 710.8 - Misbranding by reference to registration or to registration number.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... HUMAN SERVICES (CONTINUED) COSMETICS VOLUNTARY REGISTRATION OF COSMETIC PRODUCT ESTABLISHMENTS § 710.8 Misbranding by reference to registration or to registration number. Registration of a cosmetic...

  4. SULFUR PESTICIDE REGISTRATION STANDARD

    EPA Science Inventory

    The document contains information regarding reregistration of pesticide products containing the subject active ingredient. The document includes how to register under a registration standard, regulatory position and rationale, and summaries of data requirements and data gaps. Als...

  5. Note on a new class of metrics: touching metrics

    NASA Astrophysics Data System (ADS)

    Starovoitov, Valery V.

    1996-09-01

    A new class of functions is studied. They are generalizations of the little-known `flower-shop distance'. We call them touching functions. Some of them are metrics, i.e. touching metrics (TM). Disks, circles and digital paths based on these metrics are also studied. The distance transform based on TMs is introduced and a scheme for the algorithm is given.

  6. An Iterative Image Registration Algorithm by Optimizing Similarity Measurement

    PubMed Central

    Chu, Wei; Ma, Li; Song, John; Vorburger, Theodore

    2010-01-01

    A new registration algorithm based on Newton-Raphson iteration is proposed to align images with rigid body transformation. A set of transformation parameters consisting of translation in x and y and rotation angle around z is calculated by optimizing a specified similarity metric using the Newton-Raphson method. This algorithm has been tested by registering and correlating pairs of topography measurements of nominally identical NIST Standard Reference Material (SRM 2461) standard cartridge cases, and very good registration accuracy has been obtained. PMID:27134776

  7. Developing Image Processing Meta-Algorithms with Data Mining of Multiple Metrics

    PubMed Central

    Cunha, Alexandre; Toga, A. W.; Parker, D. Stott

    2014-01-01

    People often use multiple metrics in image processing, but here we take a novel approach of mining the values of batteries of metrics on image processing results. We present a case for extending image processing methods to incorporate automated mining of multiple image metric values. Here by a metric we mean any image similarity or distance measure, and in this paper we consider intensity-based and statistical image measures and focus on registration as an image processing problem. We show how it is possible to develop meta-algorithms that evaluate different image processing results with a number of different metrics and mine the results in an automated fashion so as to select the best results. We show that the mining of multiple metrics offers a variety of potential benefits for many image processing problems, including improved robustness and validation. PMID:24653748

  8. The Kerr metric

    NASA Astrophysics Data System (ADS)

    Teukolsky, Saul A.

    2015-06-01

    This review describes the events leading up to the discovery of the Kerr metric in 1963 and the enormous impact the discovery has had in the subsequent 50 years. The review discusses the Penrose process, the four laws of black hole mechanics, uniqueness of the solution, and the no-hair theorems. It also includes Kerr perturbation theory and its application to black hole stability and quasi-normal modes. The Kerr metric's importance in the astrophysics of quasars and accreting stellar-mass black hole systems is detailed. A theme of the review is the ‘miraculous’ nature of the solution, both in describing in a simple analytic formula the most general rotating black hole, and in having unexpected mathematical properties that make many calculations tractable. Also included is a pedagogical derivation of the solution suitable for a first course in general relativity.

  9. Quality Metrics in Endoscopy

    PubMed Central

    Gurudu, Suryakanth R.

    2013-01-01

    Endoscopy has evolved in the past 4 decades to become an important tool in the diagnosis and management of many digestive diseases. Greater focus on endoscopic quality has highlighted the need to ensure competency among endoscopists. A joint task force of the American College of Gastroenterology and the American Society for Gastrointestinal Endoscopy has proposed several quality metrics to establish competence and help define areas of continuous quality improvement. These metrics represent quality in endoscopy pertinent to pre-, intra-, and postprocedural periods. Quality in endoscopy is a dynamic and multidimensional process that requires continuous monitoring of several indicators and benchmarking with local and national standards. Institutions and practices should have a process in place for credentialing endoscopists and for the assessment of competence regarding individual endoscopic procedures. PMID:24711767

  10. Bibliography on metrication

    NASA Astrophysics Data System (ADS)

    Smith, C. R.; Powel, M. B.

    1990-08-01

    This is a bibliography on metrication, the conversion to the International System of Units (SI), compiled from citations dated from January 1977 through July 1989. Citations include books, conference proceedings, newspapers, periodicals, government and civilian documents and reports. Subject indices for each type of citation and an author index for the entire work are included. A variety of subject categories such as legislation, construction, avionics, consumers, engineering, education, management, standards, agriculture, marketing and many others are available.

  11. Aquatic Acoustic Metrics Interface

    Energy Science and Technology Software Center (ESTSC)

    2012-12-18

    Fishes and marine mammals may suffer a range of potential effects from exposure to intense underwater sound generated by anthropogenic activities such as pile driving, shipping, sonars, and underwater blasting. Several underwater sound recording (USR) devices have been built to acquire samples of the underwater sound generated by anthropogenic activities. Software becomes indispensable for processing and analyzing the audio files recorded by these USRs. The new Aquatic Acoustic Metrics Interface Utility Software (AAMI) is specificallymore » designed for analysis of underwater sound recordings to provide data in metrics that facilitate evaluation of the potential impacts of the sound on aquatic animals. In addition to the basic functions, such as loading and editing audio files recorded by USRs and batch processing of sound files, the software utilizes recording system calibration data to compute important parameters in physical units. The software also facilitates comparison of the noise sound sample metrics with biological measures such as audiograms of the sensitivity of aquatic animals to the sound, integrating various components into a single analytical frame.« less

  12. Rotational clutter metric

    NASA Astrophysics Data System (ADS)

    Salem, Salem; Halford, Carl; Moyer, Steve; Gundy, Matthew

    2009-08-01

    A new approach to linear discriminant analysis (LDA), called orthogonal rotational LDA (ORLDA) is presented. Using ORLDA and properly accounting for target size allowed development of a new clutter metric that is based on the Laplacian pyramid (LP) decomposition of clutter images. The new metric achieves correlation exceeding 98% with expert human labeling of clutter levels in a set of 244 infrared images. Our clutter metric is based on the set of weights for the LP levels that best classify images into clutter levels as manually classified by an expert human observer. LDA is applied as a preprocessing step to classification. LDA suffers from a few limitations in this application. Therefore, we propose a new approach to LDA, called ORLDA, using orthonormal geometric rotations. Each rotation brings the LP feature space closer to the LDA solution while retaining orthogonality in the feature space. To understand the effects of target size on clutter, we applied ORLDA at different target sizes. The outputs are easily related because they are functions of orthogonal rotation angles. Finally, we used Bayesian decision theory to learn class boundaries for clutter levels at different target sizes.

  13. Aquatic Acoustic Metrics Interface

    SciTech Connect

    2012-12-18

    Fishes and marine mammals may suffer a range of potential effects from exposure to intense underwater sound generated by anthropogenic activities such as pile driving, shipping, sonars, and underwater blasting. Several underwater sound recording (USR) devices have been built to acquire samples of the underwater sound generated by anthropogenic activities. Software becomes indispensable for processing and analyzing the audio files recorded by these USRs. The new Aquatic Acoustic Metrics Interface Utility Software (AAMI) is specifically designed for analysis of underwater sound recordings to provide data in metrics that facilitate evaluation of the potential impacts of the sound on aquatic animals. In addition to the basic functions, such as loading and editing audio files recorded by USRs and batch processing of sound files, the software utilizes recording system calibration data to compute important parameters in physical units. The software also facilitates comparison of the noise sound sample metrics with biological measures such as audiograms of the sensitivity of aquatic animals to the sound, integrating various components into a single analytical frame.

  14. Metrics for Energy Resilience

    SciTech Connect

    Paul E. Roege; Zachary A. Collier; James Mancillas; John A. McDonagh; Igor Linkov

    2014-09-01

    Energy lies at the backbone of any advanced society and constitutes an essential prerequisite for economic growth, social order and national defense. However there is an Achilles heel to today?s energy and technology relationship; namely a precarious intimacy between energy and the fiscal, social, and technical systems it supports. Recently, widespread and persistent disruptions in energy systems have highlighted the extent of this dependence and the vulnerability of increasingly optimized systems to changing conditions. Resilience is an emerging concept that offers to reconcile considerations of performance under dynamic environments and across multiple time frames by supplementing traditionally static system performance measures to consider behaviors under changing conditions and complex interactions among physical, information and human domains. This paper identifies metrics useful to implement guidance for energy-related planning, design, investment, and operation. Recommendations are presented using a matrix format to provide a structured and comprehensive framework of metrics relevant to a system?s energy resilience. The study synthesizes previously proposed metrics and emergent resilience literature to provide a multi-dimensional model intended for use by leaders and practitioners as they transform our energy posture from one of stasis and reaction to one that is proactive and which fosters sustainable growth.

  15. Towards an intercomparison of automated registration algorithms for multiple source remote sensing data

    NASA Technical Reports Server (NTRS)

    LeMoigne, Jacqueline; Xia, Wei; Chettri, Samir; El-Ghazawi, Tarek; Kaymaz, Emre; Lerner, Bao-Ting; Mareboyana, Manohar; Netanyahu, Nathan; Pierce, John; Raghavan, Srini; Tilton, James C.; Campbell, William J.; Cromp, Robert F.

    1997-01-01

    The first step in the integration of multiple data is registration, either relative image-to-image registration or absolute geo-registration, to a map or a fixed coordinate system. As the need for automating registration techniques is recognized, we feel that there is a need to survey all the registration methods which may be applicable to Earth and space science problems and to evaluate their performances on a large variety of existing remote sensing data as well as on simulated data of soon-to-be-flown instruments. In this paper we will describe: 1) the operational toolbox which we are developing and which will consist in some of the most important registration techniques; and 2) the quantitative intercomparison of the different methods, which will allow a user to select the desired registration technique based on this evaluation and the visualization of the registration results.

  16. Performance Metrics for Commercial Buildings

    SciTech Connect

    Fowler, Kimberly M.; Wang, Na; Romero, Rachel L.; Deru, Michael P.

    2010-09-30

    Commercial building owners and operators have requested a standard set of key performance metrics to provide a systematic way to evaluate the performance of their buildings. The performance metrics included in this document provide standard metrics for the energy, water, operations and maintenance, indoor environmental quality, purchasing, waste and recycling and transportation impact of their building. The metrics can be used for comparative performance analysis between existing buildings and industry standards to clarify the impact of sustainably designed and operated buildings.

  17. Say "Yes" to Metric Measure.

    ERIC Educational Resources Information Center

    Monroe, Eula Ewing; Nelson, Marvin N.

    2000-01-01

    Provides a brief history of the metric system. Discusses the infrequent use of the metric measurement system in the United States, why conversion from the customary system to the metric system is difficult, and the need for change. (Contains 14 resources.) (ASK)

  18. Metrication, American Style. Fastback 41.

    ERIC Educational Resources Information Center

    Izzi, John

    The purpose of this pamphlet is to provide a starting point of information on the metric system for any concerned or interested reader. The material is organized into five brief chapters: Man and Measurement; Learning the Metric System; Progress Report: Education; Recommended Sources; and Metrication, American Style. Appendixes include an…

  19. Metrication in a global environment

    NASA Technical Reports Server (NTRS)

    Aberg, J.

    1994-01-01

    A brief history about the development of the metric system of measurement is given. The need for the U.S. to implement the 'SI' metric system in the international markets, especially in the aerospace and general trade, is discussed. Development of metric implementation and experiences locally, nationally, and internationally are included.

  20. Some References on Metric Information.

    ERIC Educational Resources Information Center

    National Bureau of Standards (DOC), Washington, DC.

    This resource work lists metric information published by the U.S. Government and the American National Standards Institute. Also organizations marketing metric materials for education are given. A short table of conversions is included as is a listing of basic metric facts for everyday living. (LS)

  1. EVALUATION OF REGISTRATION, COMPRESSION AND CLASSIFICATION ALGORITHMS

    NASA Technical Reports Server (NTRS)

    Jayroe, R. R.

    1994-01-01

    Several types of algorithms are generally used to process digital imagery such as Landsat data. The most commonly used algorithms perform the task of registration, compression, and classification. Because there are different techniques available for performing registration, compression, and classification, imagery data users need a rationale for selecting a particular approach to meet their particular needs. This collection of registration, compression, and classification algorithms was developed so that different approaches could be evaluated and the best approach for a particular application determined. Routines are included for six registration algorithms, six compression algorithms, and two classification algorithms. The package also includes routines for evaluating the effects of processing on the image data. This collection of routines should be useful to anyone using or developing image processing software. Registration of image data involves the geometrical alteration of the imagery. Registration routines available in the evaluation package include image magnification, mapping functions, partitioning, map overlay, and data interpolation. The compression of image data involves reducing the volume of data needed for a given image. Compression routines available in the package include adaptive differential pulse code modulation, two-dimensional transforms, clustering, vector reduction, and picture segmentation. Classification of image data involves analyzing the uncompressed or compressed image data to produce inventories and maps of areas of similar spectral properties within a scene. The classification routines available include a sequential linear technique and a maximum likelihood technique. The choice of the appropriate evaluation criteria is quite important in evaluating the image processing functions. The user is therefore given a choice of evaluation criteria with which to investigate the available image processing functions. All of the available

  2. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 14 Aeronautics and Space 1 2011-01-01 2011-01-01 false Registration number. 47.15 Section 47.15... REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft registration must place a U.S. registration number (registration mark) on the Aircraft Registration Application,...

  3. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 14 Aeronautics and Space 1 2012-01-01 2012-01-01 false Registration number. 47.15 Section 47.15... REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft registration must place a U.S. registration number (registration mark) on the Aircraft Registration Application,...

  4. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 14 Aeronautics and Space 1 2013-01-01 2013-01-01 false Registration number. 47.15 Section 47.15... REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft registration must place a U.S. registration number (registration mark) on the Aircraft Registration Application,...

  5. Adaptive Metric Learning for Saliency Detection.

    PubMed

    Li, Shuang; Lu, Huchuan; Lin, Zhe; Shen, Xiaohui; Price, Brian

    2015-11-01

    In this paper, we propose a novel adaptive metric learning algorithm (AML) for visual saliency detection. A key observation is that the saliency of a superpixel can be estimated by the distance from the most certain foreground and background seeds. Instead of measuring distance on the Euclidean space, we present a learning method based on two complementary Mahalanobis distance metrics: 1) generic metric learning (GML) and 2) specific metric learning (SML). GML aims at the global distribution of the whole training set, while SML considers the specific structure of a single image. Considering that multiple similarity measures from different views may enhance the relevant information and alleviate the irrelevant one, we try to fuse the GML and SML together and experimentally find the combining result does work well. Different from the most existing methods which are directly based on low-level features, we devise a superpixelwise Fisher vector coding approach to better distinguish salient objects from the background. We also propose an accurate seeds selection mechanism and exploit contextual and multiscale information when constructing the final saliency map. Experimental results on various image sets show that the proposed AML performs favorably against the state-of-the-arts. PMID:26054067

  6. Ricci Flow-based Spherical Parameterization and Surface Registration.

    PubMed

    Chen, X; He, H; Zou, G; Zhang, X; Gu, X; Hua, J

    2013-09-01

    This paper presents an improved Euclidean Ricci flow method for spherical parameterization. We subsequently invent a scale space processing built upon Ricci energy to extract robust surface features for accurate surface registration. Since our method is based on the proposed Euclidean Ricci flow, it inherits the properties of Ricci flow such as conformality, robustness and intrinsicalness, facilitating efficient and effective surface mapping. Compared with other surface registration methods using curvature or sulci pattern, our method demonstrates a significant improvement for surface registration. In addition, Ricci energy can capture local differences for surface analysis as shown in the experiments and applications. PMID:24019739

  7. Corneal topography matching by iterative registration.

    PubMed

    Wang, Junjie; Elsheikh, Ahmed; Davey, Pinakin G; Wang, Weizhuo; Bao, Fangjun; Mottershead, John E

    2014-11-01

    Videokeratography is used for the measurement of corneal topography in overlapping portions (or maps) which must later be joined together to form the overall topography of the cornea. The separate portions are measured from different viewpoints and therefore must be brought together by registration of measurement points in the regions of overlap. The central map is generally the most accurate, but all maps are measured with uncertainty that increases towards the periphery. It becomes the reference (or static) map, and the peripheral (or dynamic) maps must then be transformed by rotation and translation so that the overlapping portions are matched. The process known as registration, of determining the necessary transformation, is a well-understood procedure in image analysis and has been applied in several areas of science and engineering. In this article, direct search optimisation using the Nelder-Mead algorithm and several variants of the iterative closest/corresponding point routine are explained and applied to simulated and real clinical data. The measurement points on the static and dynamic maps are generally different so that it becomes necessary to interpolate, which is done using a truncated series of Zernike polynomials. The point-to-plane iterative closest/corresponding point variant has the advantage of releasing certain optimisation constraints that lead to persistent registration and alignment errors when other approaches are used. The point-to-plane iterative closest/corresponding point routine is found to be robust to measurement noise, insensitive to starting values of the transformation parameters and produces high-quality results when using real clinical data. PMID:25500860

  8. MR to CT registration of brains using image synthesis

    NASA Astrophysics Data System (ADS)

    Roy, Snehashis; Carass, Aaron; Jog, Amod; Prince, Jerry L.; Lee, Junghoon

    2014-03-01

    Computed tomography (CT) is the preferred imaging modality for patient dose calculation for radiation therapy. Magnetic resonance (MR) imaging (MRI) is used along with CT to identify brain structures due to its superior soft tissue contrast. Registration of MR and CT is necessary for accurate delineation of the tumor and other structures, and is critical in radiotherapy planning. Mutual information (MI) or its variants are typically used as a similarity metric to register MRI to CT. However, unlike CT, MRI intensity does not have an accepted calibrated intensity scale. Therefore, MI-based MR-CT registration may vary from scan to scan as MI depends on the joint histogram of the images. In this paper, we propose a fully automatic framework for MR-CT registration by synthesizing a synthetic CT image from MRI using a co-registered pair of MR and CT images as an atlas. Patches of the subject MRI are matched to the atlas and the synthetic CT patches are estimated in a probabilistic framework. The synthetic CT is registered to the original CT using a deformable registration and the computed deformation is applied to the MRI. In contrast to most existing methods, we do not need any manual intervention such as picking landmarks or regions of interests. The proposed method was validated on ten brain cancer patient cases, showing 25% improvement in MI and correlation between MR and CT images after registration compared to state-of-the-art registration methods.

  9. Optical metrics and projective equivalence

    SciTech Connect

    Casey, Stephen; Dunajski, Maciej; Gibbons, Gary; Warnick, Claude

    2011-04-15

    Trajectories of light rays in a static spacetime are described by unparametrized geodesics of the Riemannian optical metric associated with the Lorentzian spacetime metric. We investigate the uniqueness of this structure and demonstrate that two different observers, moving relative to one another, who both see the Universe as static may determine the geometry of the light rays differently. More specifically, we classify Lorentzian metrics admitting more than one hyper-surface orthogonal timelike Killing vector and analyze the projective equivalence of the resulting optical metrics. These metrics are shown to be projectively equivalent up to diffeomorphism if the static Killing vectors generate a group SL(2,R), but not projectively equivalent in general. We also consider the cosmological C metrics in Einstein-Maxwell theory and demonstrate that optical metrics corresponding to different values of the cosmological constant are projectively equivalent.

  10. Automatic sub-volume registration by probabilistic random search

    NASA Astrophysics Data System (ADS)

    Han, Jingfeng; Qiao, Min; Hornegger, Joachim; Kuwert, Torsten; Bautz, Werner; Römer, Wolfgang

    2006-03-01

    Registration of an individual's image data set to an anatomical atlas provides valuable information to the physician. In many cases, the individual image data sets are partial data, which may be mapped to one part or one organ of the entire atlas data. Most of the existing intensity based image registration approaches are designed to align images of the entire view. When they are applied to the registration with partial data, a manual pre-registration is usually required. This paper proposes a fully automatic approach to the registration of the incomplete image data to an anatomical atlas. The spatial transformations are modelled as any parametric functions. The proposed method is built upon a random search mechanism, which allows to find the optimal transformation randomly and globally even when the initialization is not ideal. It works more reliably than the existing methods for the partial data registration because it successfully overcomes the local optimum problem. With appropriate similarity measures, this framework is applicable to both mono-modal and multi-modal registration problems with partial data. The contribution of this work is the description of the mathematical framework of the proposed algorithm and the implementation of the related software. The medical evaluation on the MRI data and the comparison of the proposed method with different existing registration methods show the feasibility and superiority of the proposed method.

  11. Building a Metric

    NASA Technical Reports Server (NTRS)

    Spencer, Shakira

    2007-01-01

    Launch Services Program is a Kennedy Space Center based program whose job it is to undertake all the necessary roles required to successfully launch Expendable Launch Vehicles. This project was designed to help Launch Services Program accurately report how successful they have been at launching missions on time or +/- 2 days from the scheduled launch date and also if they weren't successful, why. This information will be displayed in the form of a metric, which answers these questions in a clear and accurate way.

  12. SI (Metric) handbook

    NASA Technical Reports Server (NTRS)

    Artusa, Elisa A.

    1994-01-01

    This guide provides information for an understanding of SI units, symbols, and prefixes; style and usage in documentation in both the US and in the international business community; conversion techniques; limits, fits, and tolerance data; and drawing and technical writing guidelines. Also provided is information of SI usage for specialized applications like data processing and computer programming, science, engineering, and construction. Related information in the appendixes include legislative documents, historical and biographical data, a list of metric documentation, rules for determining significant digits and rounding, conversion factors, shorthand notation, and a unit index.

  13. Oriented Gaussian mixture models for nonrigid 2D/3D coronary artery registration.

    PubMed

    Baka, N; Metz, C T; Schultz, C J; van Geuns, R-J; Niessen, W J; van Walsum, T

    2014-05-01

    2D/3D registration of patient vasculature from preinterventional computed tomography angiography (CTA) to interventional X-ray angiography is of interest to improve guidance in percutaneous coronary interventions. In this paper we present a novel feature based 2D/3D registration framework, that is based on probabilistic point correspondences, and show its usefulness on aligning 3D coronary artery centerlines derived from CTA images with their 2D projection derived from interventional X-ray angiography. The registration framework is an extension of the Gaussian mixture model (GMM) based point-set registration to the 2D/3D setting, with a modified distance metric. We also propose a way to incorporate orientation in the registration, and show its added value for artery registration on patient datasets as well as in simulation experiments. The oriented GMM registration achieved a median accuracy of 1.06 mm, with a convergence rate of 81% for nonrigid vessel centerline registration on 12 patient datasets, using a statistical shape model. The method thereby outperformed the iterative closest point algorithm, the GMM registration without orientation, and two recently published methods on 2D/3D coronary artery registration. PMID:24770908

  14. Image registration by parts

    NASA Technical Reports Server (NTRS)

    Chalermwat, Prachya; El-Ghazawi, Tarek; LeMoigne, Jacqueline

    1997-01-01

    In spite of the large number of different image registration techniques, most of these techniques use the correlation operation to match spatial image characteristics. Correlation is known to be one of the most computationally intensive operations and its computational needs grow rapidly with the increase in the image sizes. In this article, we show that, in many cases, it might be sufficient to determine image transformations by considering only one or several parts of the image rather than the entire image, which could result in substantial computational savings. This paper introduces the concept of registration by parts and investigates its viability. It describes alternative techniques for such image registration by parts and presents early empirical results that address the underlying trade-offs.

  15. Towards operational multisensor registration

    NASA Technical Reports Server (NTRS)

    Rignot, Eric J. M.; Kwok, Ronald; Curlander, John C.

    1991-01-01

    To use data from a number of different remote sensors in a synergistic manner, a multidimensional analysis of the data is necessary. However, prior to this analysis, processing to correct for the systematic geometric distortion characteristic of each sensor is required. Furthermore, the registration process must be fully automated to handle a large volume of data and high data rates. A conceptual approach towards an operational multisensor registration algorithm is presented. The performance requirements of the algorithm are first formulated given the spatially, temporally, and spectrally varying factors that influence the image characteristics and the science requirements of various applications. Several registration techniques that fit within the structure of this algorithm are also presented. Their performance was evaluated using a multisensor test data set assembled from LANDSAT TM, SEASAT, SIR-B, Thermal Infrared Multispectral Scanner (TIMS), and SPOT sensors.

  16. Mutual information image registration based on improved bee evolutionary genetic algorithm

    NASA Astrophysics Data System (ADS)

    Xu, Gang; Tu, Jingzhi

    2009-07-01

    In recent years, the mutual information is regarded as a more efficient similarity metrics in the image registration. According to the features of mutual information image registration, the Bee Evolution Genetic Algorithm (BEGA) is chosen for optimizing parameters, which imitates swarm mating. Besides, we try our best adaptively set the initial parameters to improve the BEGA. The programming result shows the wonderful precision of the algorithm.

  17. A Locally Weighted Fixation Density-Based Metric for Assessing the Quality of Visual Saliency Predictions.

    PubMed

    Gide, Milind S; Karam, Lina J

    2016-08-01

    With the increased focus on visual attention (VA) in the last decade, a large number of computational visual saliency methods have been developed over the past few years. These models are traditionally evaluated by using performance evaluation metrics that quantify the match between predicted saliency and fixation data obtained from eye-tracking experiments on human observers. Though a considerable number of such metrics have been proposed in the literature, there are notable problems in them. In this paper, we discuss shortcomings in the existing metrics through illustrative examples and propose a new metric that uses local weights based on fixation density, which overcomes these flaws. To compare the performance of our proposed metric at assessing the quality of saliency prediction with other existing metrics, we construct a ground-truth subjective database in which saliency maps obtained from 17 different VA models are evaluated by 16 human observers on a five-point categorical scale in terms of their visual resemblance with corresponding ground-truth fixation density maps obtained from eye-tracking data. The metrics are evaluated by correlating metric scores with the human subjective ratings. The correlation results show that the proposed evaluation metric outperforms all other popular existing metrics. In addition, the constructed database and corresponding subjective ratings provide an insight into which of the existing metrics and future metrics are better at estimating the quality of saliency prediction and can be used as a benchmark. PMID:27295671

  18. Exploring Metric Symmetry

    SciTech Connect

    Zwart, P.H.; Grosse-Kunstleve, R.W.; Adams, P.D.

    2006-07-31

    Relatively minor perturbations to a crystal structure can in some cases result in apparently large changes in symmetry. Changes in space group or even lattice can be induced by heavy metal or halide soaking (Dauter et al, 2001), flash freezing (Skrzypczak-Jankun et al, 1996), and Se-Met substitution (Poulsen et al, 2001). Relations between various space groups and lattices can provide insight in the underlying structural causes for the symmetry or lattice transformations. Furthermore, these relations can be useful in understanding twinning and how to efficiently solve two different but related crystal structures. Although (pseudo) symmetric properties of a certain combination of unit cell parameters and a space group are immediately obvious (such as a pseudo four-fold axis if a is approximately equal to b in an orthorhombic space group), other relations (e.g. Lehtio, et al, 2005) that are less obvious might be crucial to the understanding and detection of certain idiosyncrasies of experimental data. We have developed a set of tools that allows straightforward exploration of possible metric symmetry relations given unit cell parameters and a space group. The new iotbx.explore{_}metric{_}symmetry command produces an overview of the various relations between several possible point groups for a given lattice. Methods for finding relations between a pair of unit cells are also available. The tools described in this newsletter are part of the CCTBX libraries, which are included in the latest (versions July 2006 and up) PHENIX and CCI Apps distributions.

  19. Pure Lovelock Kasner metrics

    NASA Astrophysics Data System (ADS)

    Camanho, Xián O.; Dadhich, Naresh; Molina, Alfred

    2015-09-01

    We study pure Lovelock vacuum and perfect fluid equations for Kasner-type metrics. These equations correspond to a single Nth order Lovelock term in the action in d=2N+1,2N+2 dimensions, and they capture the relevant gravitational dynamics when aproaching the big-bang singularity within the Lovelock family of theories. Pure Lovelock gravity also bears out the general feature that vacuum in the critical odd dimension, d=2N+1, is kinematic, i.e. we may define an analogue Lovelock-Riemann tensor that vanishes in vacuum for d=2N+1, yet the Riemann curvature is non-zero. We completely classify isotropic and vacuum Kasner metrics for this class of theories in several isotropy types. The different families can be characterized by means of certain higher order 4th rank tensors. We also analyze in detail the space of vacuum solutions for five- and six dimensional pure Gauss-Bonnet theory. It possesses an interesting and illuminating geometric structure and symmetries that carry over to the general case. We also comment on a closely related family of exponential solutions and on the possibility of solutions with complex Kasner exponents. We show that the latter imply the existence of closed timelike curves in the geometry.

  20. Automatic deformable diffusion tensor registration for fiber population analysis.

    PubMed

    Irfanoglu, M O; Machiraju, R; Sammet, S; Pierpaoli, C; Knopp, M V

    2008-01-01

    In this work, we propose a novel method for deformable tensor-to-tensor registration of Diffusion Tensor Images. Our registration method models the distances in between the tensors with Geode-sic-Loxodromes and employs a version of Multi-Dimensional Scaling (MDS) algorithm to unfold the manifold described with this metric. Defining the same shape properties as tensors, the vector images obtained through MDS are fed into a multi-step vector-image registration scheme and the resulting deformation fields are used to reorient the tensor fields. Results on brain DTI indicate that the proposed method is very suitable for deformable fiber-to-fiber correspondence and DTI-atlas construction. PMID:18982704

  1. Automatic Deformable Diffusion Tensor Registration for Fiber Population Analysis

    PubMed Central

    Irfanoglu, M.O.; Machiraju, R.; Sammet, S.; Pierpaoli, C.; Knopp, M.V.

    2016-01-01

    In this work, we propose a novel method for deformable tensor–to–tensor registration of Diffusion Tensor Images. Our registration method models the distances in between the tensors with Geode-sic–Loxodromes and employs a version of Multi-Dimensional Scaling (MDS) algorithm to unfold the manifold described with this metric. Defining the same shape properties as tensors, the vector images obtained through MDS are fed into a multi–step vector–image registration scheme and the resulting deformation fields are used to reorient the tensor fields. Results on brain DTI indicate that the proposed method is very suitable for deformable fiber–to–fiber correspondence and DTI–atlas construction. PMID:18982704

  2. Photogrammetric Processing of Apollo 15 Metric Camera Oblique Images

    NASA Astrophysics Data System (ADS)

    Edmundson, K. L.; Alexandrov, O.; Archinal, B. A.; Becker, K. J.; Becker, T. L.; Kirk, R. L.; Moratto, Z. M.; Nefian, A. V.; Richie, J. O.; Robinson, M. S.

    2016-06-01

    The integrated photogrammetric mapping system flown on the last three Apollo lunar missions (15, 16, and 17) in the early 1970s incorporated a Metric (mapping) Camera, a high-resolution Panoramic Camera, and a star camera and laser altimeter to provide support data. In an ongoing collaboration, the U.S. Geological Survey's Astrogeology Science Center, the Intelligent Robotics Group of the NASA Ames Research Center, and Arizona State University are working to achieve the most complete cartographic development of Apollo mapping system data into versatile digital map products. These will enable a variety of scientific/engineering uses of the data including mission planning, geologic mapping, geophysical process modelling, slope dependent correction of spectral data, and change detection. Here we describe efforts to control the oblique images acquired from the Apollo 15 Metric Camera.

  3. Fast Tensor Image Morphing for Elastic Registration

    PubMed Central

    Yap, Pew-Thian; Wu, Guorong; Zhu, Hongtu; Lin, Weili; Shen, Dinggang

    2009-01-01

    We propose a novel algorithm, called Fast Tensor Image Morphing for Elastic Registration or F-TIMER. F-TIMER leverages multiscale tensor regional distributions and local boundaries for hierarchically driving deformable matching of tensor image volumes. Registration is achieved by aligning a set of automatically determined structural landmarks, via solving a soft correspondence problem. Based on the estimated correspondences, thin-plate splines are employed to generate a smooth, topology preserving, and dense transformation, and to avoid arbitrary mapping of non-landmark voxels. To mitigate the problem of local minima, which is common in the estimation of high dimensional transformations, we employ a hierarchical strategy where a small subset of voxels with more distinctive attribute vectors are first deployed as landmarks to estimate a relatively robust low-degrees-of-freedom transformation. As the registration progresses, an increasing number of voxels are permitted to participate in refining the correspondence matching. A scheme as such allows less conservative progression of the correspondence matching towards the optimal solution, and hence results in a faster matching speed. Results indicate that better accuracy can be achieved by F-TIMER, compared with other deformable registration algorithms [1, 2], with significantly reduced computation time cost of 4–14 folds. PMID:20426052

  4. Comparative Study of Two Automatic Registration Algorithms

    NASA Astrophysics Data System (ADS)

    Grant, D.; Bethel, J.; Crawford, M.

    2013-10-01

    The Iterative Closest Point (ICP) algorithm is prevalent for the automatic fine registration of overlapping pairs of terrestrial laser scanning (TLS) data. This method along with its vast number of variants, obtains the least squares parameters that are necessary to align the TLS data by minimizing some distance metric between the scans. The ICP algorithm uses a "model-data" concept in which the scans obtain differential treatment in the registration process depending on whether they were assigned to be the "model" or "data". For each of the "data" points, corresponding points from the "model" are sought. Another concept of "symmetric correspondence" was proposed in the Point-to-Plane (P2P) algorithm, where both scans are treated equally in the registration process. The P2P method establishes correspondences on both scans and minimizes the point-to-plane distances between the scans by simultaneously considering the stochastic properties of both scans. This paper studies both the ICP and P2P algorithms in terms of their consistency in registration parameters for pairs of TLS data. The question being investigated in this paper is, should scan A be registered to scan B, will the parameters be the same if scan B were registered to scan A? Experiments were conducted with eight pairs of real TLS data which were registered by the two algorithms in the forward (scan A to scan B) and backward (scan B to scan A) modes and the results were compared. The P2P algorithm was found to be more consistent than the ICP algorithm. The differences in registration accuracy between the forward and backward modes were negligible when using the P2P algorithm (mean difference of 0.03 mm). However, the ICP had a mean difference of 4.26 mm. Each scan was also transformed by the forward and backward parameters of the two algorithms and the misclosure computed. The mean misclosure for the P2P algorithm was 0.80 mm while that for the ICP algorithm was 5.39 mm. The conclusion from this study is

  5. Avoiding Stair-Step Artifacts in Image Registration for GOES-R Navigation and Registration Assessment

    NASA Technical Reports Server (NTRS)

    Grycewicz, Thomas J.; Tan, Bin; Isaacson, Peter J.; De Luccia, Frank J.; Dellomo, John

    2016-01-01

    In developing software for independent verification and validation (IVV) of the Image Navigation and Registration (INR) capability for the Geostationary Operational Environmental Satellite R Series (GOES-R) Advanced Baseline Imager (ABI), we have encountered an image registration artifact which limits the accuracy of image offset estimation at the subpixel scale using image correlation. Where the two images to be registered have the same pixel size, subpixel image registration preferentially selects registration values where the image pixel boundaries are close to lined up. Because of the shape of a curve plotting input displacement to estimated offset, we call this a stair-step artifact. When one image is at a higher resolution than the other, the stair-step artifact is minimized by correlating at the higher resolution. For validating ABI image navigation, GOES-R images are correlated with Landsat-based ground truth maps. To create the ground truth map, the Landsat image is first transformed to the perspective seen from the GOES-R satellite, and then is scaled to an appropriate pixel size. Minimizing processing time motivates choosing the map pixels to be the same size as the GOES-R pixels. At this pixel size image processing of the shift estimate is efficient, but the stair-step artifact is present. If the map pixel is very small, stair-step is not a problem, but image correlation is computation-intensive. This paper describes simulation-based selection of the scale for truth maps for registering GOES-R ABI images.

  6. Handbook of aircraft noise metrics

    NASA Technical Reports Server (NTRS)

    Bennett, R. L.; Pearsons, K. S.

    1981-01-01

    Information is presented on 22 noise metrics that are associated with the measurement and prediction of the effects of aircraft noise. Some of the instantaneous frequency weighted sound level measures, such as A-weighted sound level, are used to provide multiple assessment of the aircraft noise level. Other multiple event metrics, such as day-night average sound level, were designed to relate sound levels measured over a period of time to subjective responses in an effort to determine compatible land uses and aid in community planning. The various measures are divided into: (1) instantaneous sound level metrics; (2) duration corrected single event metrics; (3) multiple event metrics; and (4) speech communication metrics. The scope of each measure is examined in terms of its: definition, purpose, background, relationship to other measures, calculation method, example, equipment, references, and standards.

  7. Handbook of aircraft noise metrics

    NASA Astrophysics Data System (ADS)

    Bennett, R. L.; Pearsons, K. S.

    1981-03-01

    Information is presented on 22 noise metrics that are associated with the measurement and prediction of the effects of aircraft noise. Some of the instantaneous frequency weighted sound level measures, such as A-weighted sound level, are used to provide multiple assessment of the aircraft noise level. Other multiple event metrics, such as day-night average sound level, were designed to relate sound levels measured over a period of time to subjective responses in an effort to determine compatible land uses and aid in community planning. The various measures are divided into: (1) instantaneous sound level metrics; (2) duration corrected single event metrics; (3) multiple event metrics; and (4) speech communication metrics. The scope of each measure is examined in terms of its: definition, purpose, background, relationship to other measures, calculation method, example, equipment, references, and standards.

  8. Earth Science Imagery Registration

    NASA Technical Reports Server (NTRS)

    LeMoigne, Jacqueline; Morisette, Jeffrey; Cole-Rhodes, Arlene; Johnson, Kisha; Netanyahu, Nathan S.; Eastman, Roger; Stone, Harold; Zavorin, Ilya

    2003-01-01

    The study of global environmental changes involves the comparison, fusion, and integration of multiple types of remotely-sensed data at various temporal, radiometric, and spatial resolutions. Results of this integration may be utilized for global change analysis, as well as for the validation of new instruments or for new data analysis. Furthermore, future multiple satellite missions will include many different sensors carried on separate platforms, and the amount of remote sensing data to be combined is increasing tremendously. For all of these applications, the first required step is fast and automatic image registration, and as this need for automating registration techniques is being recognized, it becomes necessary to survey all the registration methods which may be applicable to Earth and space science problems and to evaluate their performances on a large variety of existing remote sensing data as well as on simulated data of soon-to-be-flown instruments. In this paper we present one of the first steps toward such an exhaustive quantitative evaluation. First, the different components of image registration algorithms are reviewed, and different choices for each of these components are described. Then, the results of the evaluation of the corresponding algorithms combining these components are presented o n several datasets. The algorithms are based on gray levels or wavelet features and compute rigid transformations (including scale, rotation, and shifts). Test datasets include synthetic data as well as data acquired over several EOS Land Validation Core Sites with the IKONOS and the Landsat-7 sensors.

  9. Distributed Continuous Registration.

    ERIC Educational Resources Information Center

    Myers, Donald L.

    1981-01-01

    The development, implementation, and features of Northern Colorado's continuous registration system are described. The system is an online distributed processing system, written in COBOL for an IBM Series I under the CPS operating system. Course selection, permit to enroll, and drop/add forms are provided. (Author/MLW)

  10. CUNY's Voter Registration System.

    ERIC Educational Resources Information Center

    Hershenson, Jay; And Others

    This collection of items including public testimony by the Vice Chancellor, Jay Hershenson, a formal resolution, a press release, and brochures, documents the City University of New York's (CUNY) unique voter registration system, "CUNY Project Vote". As the press release describes it, Project Vote is the nation's largest student voter registration…