Science.gov

Sample records for micro optical ct

  1. Dental imaging using laminar optical tomography and micro CT

    NASA Astrophysics Data System (ADS)

    Long, Feixiao; Ozturk, Mehmet S.; Intes, Xavier; Kotha, Shiva

    2014-02-01

    Dental lesions located in the pulp are quite difficult to identify based on anatomical contrast, and, hence, to diagnose using traditional imaging methods such as dental CT. However, such lesions could lead to functional and/or molecular optical contrast. Herein, we report on the preliminary investigation of using Laminar Optical Tomography (LOT) to image the pulp and root canals in teeth. LOT is a non-contact, high resolution, molecular and functional mesoscopic optical imaging modality. To investigate the potential of LOT for dental imaging, we injected an optical dye into ex vivo teeth samples and imaged them using LOT and micro-CT simultaneously. A rigid image registration between the LOT and micro-CT reconstruction was obtained, validating the potential of LOT to image molecular optical contrast deep in the teeth with accuracy, non-invasively. We demonstrate that LOT can retrieve the 3D bio-distribution of molecular probes at depths up to 2mm with a resolution of several hundred microns in teeth.

  2. Application of the optically stimulated luminescence (OSL) technique for mouse dosimetry in micro-CT imaging

    SciTech Connect

    Vrigneaud, Jean-Marc; Courteau, Alan; Oudot, Alexandra; Collin, Bertrand; Ranouil, Julien; Morgand, Loïc; Raguin, Olivier; Walker, Paul; Brunotte, François

    2013-12-15

    Purpose: Micro-CT is considered to be a powerful tool to investigate various models of disease on anesthetized animals. In longitudinal studies, the radiation dose delivered by the micro-CT to the same animal is a major concern as it could potentially induce spurious effects in experimental results. Optically stimulated luminescence dosimeters (OSLDs) are a relatively new kind of detector used in radiation dosimetry for medical applications. The aim of this work was to assess the dose delivered by the CT component of a micro-SPECT (single-photon emission computed tomography)/CT camera during a typical whole-body mouse study, using commercially available OSLDs based on Al{sub 2}O{sub 3}:C crystals.Methods: CTDI (computed tomography dose index) was measured in micro-CT with a properly calibrated pencil ionization chamber using a rat-like phantom (60 mm in diameter) and a mouse-like phantom (30 mm in diameter). OSLDs were checked for reproducibility and linearity in the range of doses delivered by the micro-CT. Dose measurements obtained with OSLDs were compared to those of the ionization chamber to correct for the radiation quality dependence of OSLDs in the low-kV range. Doses to tissue were then investigated in phantoms and cadavers. A 30 mm diameter phantom, specifically designed to insert OSLDs, was used to assess radiation dose over a typical whole-body mouse imaging study. Eighteen healthy female BALB/c mice weighing 27.1 ± 0.8 g (1 SD) were euthanized for small animal measurements. OLSDs were placed externally or implanted internally in nine different locations by an experienced animal technician. Five commonly used micro-CT protocols were investigated.Results: CTDI measurements were between 78.0 ± 2.1 and 110.7 ± 3.0 mGy for the rat-like phantom and between 169.3 ± 4.6 and 203.6 ± 5.5 mGy for the mouse-like phantom. On average, the displayed CTDI at the operator console was underestimated by 1.19 for the rat-like phantom and 2.36 for the mouse

  3. MicroCT and optical coherence tomography imagistic assessment of the dental roots adhesive

    NASA Astrophysics Data System (ADS)

    Sinescu, Cosmin; Negrutiu, Meda Lavinia; Nica, Luminita; Manescu, Adrian; Duma, Virgil-Florin; Podoleanu, Adrian G.

    2015-03-01

    Several obturation methods are available today to study the 3D filling of the root canal. There are also several methods capable to evaluate the ability to seal apically the root canals. However, the common methods of investigation are invasive; they also lead to the destruction of the samples. If the sectioning differs slightly from the desired area, the investigation is non-conclusive regarding the micro-leakages. Also, although the use of Cone-Beam Micro Computer Tomography (CBCT) appears to be most promising for endodontic purposes, its effective radiation doses are higher than with conventional intra-oral and panoramic imaging. In contrast, enface (ef) Optical Coherence Tomography (OCT) proves to be efficient for the investigation of material defects of dental restorations, dental materials, and micro-leakage at the interfaces, where the penetration depth depends on the material. Therefore, ef OCT has been proposed in our studies as a potential tool for in vivo endodontic imaging. Twenty five recently extracted human maxillary molars were selected for the study for caries or periodontal reasons. The pulp chambers were completely opened, the dental pulp was removed, and the root canals were shaped. Silver nanoparticles were used in half of the samples in order to increase the scattering of the adhesive material in comparison with the dental roots walls. The sample teeth were then probed using Time Domain (TD) OCT working at 1300 nm. A synchrotron radiation X-Ray microCT experiment was also performed. The imagistic results pointed out the efficiency of the silver nanoparticle layer used in order to increase the scattering of the root canal adhesive scattering for the OCT non-invasive investigation. MicroCT allowed for obtaining qualitative data related to the depth penetration of the root canal adhesive into the dentin walls.

  4. Carbon nanotube based respiratory gated micro-CT imaging of a murine model of lung tumors with optical imaging correlation

    NASA Astrophysics Data System (ADS)

    Burk, Laurel M.; Lee, Yueh Z.; Heathcote, Samuel; Wang, Ko-han; Kim, William Y.; Lu, Jianping; Zhou, Otto

    2011-03-01

    Current optical imaging techniques can successfully measure tumor load in murine models of lung carcinoma but lack structural detail. We demonstrate that respiratory gated micro-CT imaging of such models gives information about structure and correlates with tumor load measurements by optical methods. Four mice with multifocal, Kras-induced tumors expressing firefly luciferase were imaged against four controls using both optical imaging and respiratory gated micro-CT. CT images of anesthetized animals were acquired with a custom CNT-based system using 30 ms x-ray pulses during peak inspiration; respiration motion was tracked with a pressure sensor beneath each animal's abdomen. Optical imaging based on the Luc+ signal correlating with tumor load was performed on a Xenogen IVIS Kinetix. Micro-CT images were post-processed using Osirix, measuring lung volume with region growing. Diameters of the largest three tumors were measured. Relationships between tumor size, lung volumes, and optical signal were compared. CT images and optical signals were obtained for all animals at two time points. In all lobes of the Kras+ mice in all images, tumors were visible; the smallest to be readily identified measured approximately 300 microns diameter. CT-derived tumor volumes and optical signals related linearly, with r=0.94 for all animals. When derived for only tumor bearing animals, r=0.3. The trend of each individual animal's optical signal tracked correctly based on the CT volumes. Interestingly, lung volumes also correlated positively with optical imaging data and tumor volume burden, suggesting active remodeling.

  5. Bone regeneration assessment by optical coherence tomography and MicroCT synchrotron radiation

    NASA Astrophysics Data System (ADS)

    Negrutiu, Meda L.; Sinescu, Cosmin; Canjau, Silvana; Manescu, Adrian; Topalá, Florin I.; Hoinoiu, Bogdan; Romînu, Mihai; Márcáuteanu, Corina; Duma, Virgil; Bradu, Adrian; Podoleanu, Adrian G.

    2013-06-01

    Bone grafting is a commonly performed surgical procedure to augment bone regeneration in a variety of orthopaedic and maxillofacial procedures, with autologous bone being considered as the "gold standard" bone-grafting material, as it combines all properties required in a bone-graft material: osteoinduction (bone morphogenetic proteins - BMPs - and other growth factors), osteogenesis (osteoprogenitor cells) and osteoconduction (scaffold). The problematic elements of bone regenerative materials are represented by their quality control methods, the adjustment of the initial bone regenerative material, the monitoring (noninvasive, if possible) during their osteoconduction and osteointegration period and biomedical evaluation of the new regenerated bone. One of the research directions was the interface investigation of the regenerative bone materials and their behavior at different time periods on the normal femoral rat bone. 12 rat femurs were used for this investigation. In each ones a 1 mm diameter hole were drilled and a bone grafting material was inserted in the artificial defect. The femurs were removed after one, three and six months. The defects repaired by bone grafting material were evaluated by optical coherence tomography working in Time Domain Mode at 1300 nm. Three dimensional reconstructions of the interfaces were generated. The validations of the results were evaluated by microCT. Synchrotron Radiation allows achieving high spatial resolution images to be generated with high signal-to-noise ratio. In addition, Synchrotron Radiation allows acquisition of volumes at different energies and volume subtraction to enhance contrast. Evaluation of the bone grafting material/bone interface with noninvasive methods such as optical coherence tomography could act as a valuable procedure that can be use in the future in the usual clinical techniques. The results were confirmed by microCT. Optical coherence tomography can be performed in vivo and can provide a

  6. Direct composite fillings: an optical coherence tomography and microCT investigation

    NASA Astrophysics Data System (ADS)

    Negrutiu, Meda L.; Sinescu, Cosmin; Borlea, Mugurel V.; Manescu, Adrian; Duma, Virgil F.; Rominu, Mihai; Podoleanu, Adrian G.

    2015-03-01

    The treatment of carious lesions requires removal of affected dental tissue thus creating cavities that are to be filled with dedicated materials. There are several methods known which are used to assess the quality of direct dental restorations, but most of them are invasive. Optical tomographic techniques are of particular importance in the medical imaging field, because these techniques can provide non-invasive diagnostic images. Using an en-face version of OCT, we have recently demonstrated real time thorough evaluation of quality of dental fillings. The major aim of this study was to analyses the optical performance of adhesives modified with zirconia particles in different concentrations in order to improve the contrast of OCT imaging of the interface between the tooth structure, adhesive and composite resin. The OCT investigations were validated by micro CT using synchrotron radiation. The OCT Swept Source is a valuable investigation tool for the clinical evaluation of class II direct composite restorations. The unmodified adhesive layer shows poor contrast on regular OCT investigations. Adding zirconia particles to the adhesive layer provides a better scattering which allows a better characterization and quantification of direct restorations.

  7. Quantitative micro-CT

    NASA Astrophysics Data System (ADS)

    Prevrhal, Sven

    2005-09-01

    Micro-CT for bone structural analysis has progressed from an in-vitro laboratory technique to devices for in-vivo assessment of small animals and the peripheral human skeleton. Currently, topological parameters of bone architecture are the primary goals of analysis. Additional measurement of the density or degree of mineralization (DMB) of trabecular and cortical bone at the microscopic level is desirable to study effects of disease and treatment progress. This information is not commonly extracted because of the challenges of accurate measurement and calibration at the tissue level. To assess the accuracy of micro-CT DMB measurements in a realistic but controlled situation, we prepared bone-mimicking watery solutions at concentrations of 100 to 600 mg/cm3 K2PO4H and scanned them with micro-CT, both in glass vials and microcapillary tubes with inner diameters of 50, 100 and 150 μm to simulate trabecular thickness. Values of the linear attenuation coefficients μ in the reconstructed image are commonly affected by beam hardening effects for larger samples and by partial volume effects for small volumes. We implemented an iterative reconstruction technique to reduce beam hardening. Partial voluming was sought to be reduced by excluding voxels near the tube wall. With these two measures, improvement on the constancy of the reconstructed voxel values and linearity with solution concentration could be observed to over 90% accuracy. However, since the expected change in real bone is small more measurements are needed to confirm that micro-CT can indeed be adapted to assess bone mineralization at the tissue level.

  8. Development of color micro optical-CT: evaluation using phantom and biological samples

    NASA Astrophysics Data System (ADS)

    Murata, C.; Teramoto, A.; Kaneko, C.; Fujita, H.

    2015-03-01

    Micro-optical computed tomography (MOCT) is a method for performing image reconstruction using microscopic images to obtain tomographic images of small samples. Compared with conventional observation methods, it offers the possibility to obtain tomograpic images without distortion, and create three-dimensional images. However, MOCT system which developed previously outputs monochrome images, while useful color information could not be obtained from the analysis of the sample. Therefore, we focused on the features that simplify the wavelength measurement of visible light, and developed a color MOCT system that can obtain color tomographic images. In this study, we acquired tomographic images of phantom and biological samples, and evaluated its usefulness. In this system, a digital single-lens reflex camera was used as a detector that was connected to a stereoscopic microscope, and projection images were obtained by rotating the sample. The sample was fixed in the test tube by carrageenan. The projection images were obtained from various projection angles followed by decomposing the R, G and B components. Subsequently, we performed image reconstruction for each component using filtered back projection. Finally, color tomographic image was obtained by combining the three-color component images. In the experiments, we scanned a color phantom and biological samples and evaluated the color and shape reproducibility. As a result, it was found that the color and shape of the tomographic images were similar to those of the samples. These results indicate that the proposed system may be useful to obtain the three-dimensional color structure of biological samples.

  9. MicroSight Optics

    SciTech Connect

    2010-01-01

    MicroSight is an innovative gunsight technology that allows a marksman's eye to focus on both the front gunsight and the intended target. The MicroSight improves both firearm safety and performance by imaging two objects at different focal distances. The MicroSight was developed at Idaho National Laboratory, and has been licensed by Apollo Optical Systems. You can learn more about INL's research programs at http://www.facebook.com/idahonationallaboratory.

  10. MicroSight Optics

    ScienceCinema

    None

    2013-05-28

    MicroSight is an innovative gunsight technology that allows a marksman's eye to focus on both the front gunsight and the intended target. The MicroSight improves both firearm safety and performance by imaging two objects at different focal distances. The MicroSight was developed at Idaho National Laboratory, and has been licensed by Apollo Optical Systems. You can learn more about INL's research programs at http://www.facebook.com/idahonationallaboratory.

  11. CT number variations in micro CT imaging systems

    NASA Astrophysics Data System (ADS)

    Tu, Shu-Ju; Hsieh, Hui-Ling; Chao, Tsi-Chian

    2008-03-01

    CT numbers can be directly computed from the linear attenuation coefficients in the reconstructed CT images and are correlated to the electron densities of the chemical elements with specific atomic numbers. However, the computed CT numbers can be varied when different imaging parameters are used. Phantoms composed of clinically relevant and tissue-equivalent materials (lung, bone, muscle, and adipose) were scanned with a commercial circular-scanning micro CT imager. This imaging system is composed with a micro-focused x-ray tube and charged-coupled device (CCD) camera as the detector. The mean CT numbers and the corresponding standard deviations in terms of Hounsfield units were then computed from a pre-defined region of interest located within the reconstructed volumetric images. The variations of CT number were then identified from a series of imaging parameters. Those parameters include imaging acquisition modes (e.g., the metal filter used in the x-ray tube), reconstruction methods (e.g., Feldkamp and iterative algorithm), and post-image processing techniques (e.g., ring artifact, beam-hardening artifact, and smoothing processing). These variations of CT numbers are useful and important in tissue characterization, quantitative bone structure analysis, bone marrow density evaluation, and Monte Carlo dose calculations for the pilot small animal study when micro CT imaging systems are employed. Also these variations can be used as the quantification for the performance of the micro CT imaging systems.

  12. Medipix-based Spectral Micro-CT

    PubMed Central

    Xu, Qiong; He, Peng; Bennett, James; Amir, Raja; Dobbs, Bruce; Mou, Xuanqin; Wei, Biao; Butler, Anthony; Butler, Phillip; Wang, Ge

    2013-01-01

    Since Hounsfield's Nobel Prize winning breakthrough decades ago, X-ray CT has been widely applied in the clinical and preclinical applications - producing a huge number of tomographic gray-scale images. However, these images are often insufficient to distinguish crucial differences needed for diagnosis. They have poor soft tissue contrast due to inherent photon-count issues, involving high radiation dose. By physics, the X-ray spectrum is polychromatic, and it is now feasible to obtain multi-energy, spectral, or true-color, CT images. Such spectral images promise powerful new diagnostic information. The emerging Medipix technology promises energy-sensitive, high-resolution, accurate and rapid X-ray detection. In this paper, we will review the recent progress of Medipix-based spectral micro-CT with the emphasis on the results obtained by our team. It includes the state- of-the-art Medipix detector, the system and method of a commercial MARS (Medipix All Resolution System) spectral micro-CT, and the design and color diffusion of a hybrid spectral micro-CT. PMID:24194631

  13. Medipix-based Spectral Micro-CT.

    PubMed

    Yu, Hengyong; Xu, Qiong; He, Peng; Bennett, James; Amir, Raja; Dobbs, Bruce; Mou, Xuanqin; Wei, Biao; Butler, Anthony; Butler, Phillip; Wang, Ge

    2012-12-01

    Since Hounsfield's Nobel Prize winning breakthrough decades ago, X-ray CT has been widely applied in the clinical and preclinical applications - producing a huge number of tomographic gray-scale images. However, these images are often insufficient to distinguish crucial differences needed for diagnosis. They have poor soft tissue contrast due to inherent photon-count issues, involving high radiation dose. By physics, the X-ray spectrum is polychromatic, and it is now feasible to obtain multi-energy, spectral, or true-color, CT images. Such spectral images promise powerful new diagnostic information. The emerging Medipix technology promises energy-sensitive, high-resolution, accurate and rapid X-ray detection. In this paper, we will review the recent progress of Medipix-based spectral micro-CT with the emphasis on the results obtained by our team. It includes the state- of-the-art Medipix detector, the system and method of a commercial MARS (Medipix All Resolution System) spectral micro-CT, and the design and color diffusion of a hybrid spectral micro-CT. PMID:24194631

  14. Pathological calcifications studied with micro-CT

    NASA Astrophysics Data System (ADS)

    Stock, Stuart R.; Rajamannan, Nalini M.; Brooks, Ellen R.; Langman, Craig B.; Pachman, Lauren M.

    2004-10-01

    The microstructure of pathological biomineral deposits has received relatively little attention, perhaps, in part because of the difficulty preparing samples for microscopy. MicroCT avoids these difficulties, and laboratory microCT results are reviewed for aortic valve calcification (human as well as a rabbit model), for human renal calculi (stones) and for calcinoses formed in juvenile dermatomyositis (JDM). In calcified aortic valves of rabbits, numerical analysis of the data shows statistically significant correlation with diet. In a large kidney stone the pattern of mineralization is clearly revealed and may provide a temporal blueprint for stone growth. In JDM calcified deposits, very different microstructures are observed and may be related to processes unique to this disease.

  15. Key components for artifact-free micro-CT and nano-CT instruments

    NASA Astrophysics Data System (ADS)

    Sasov, Alexander; Pauwels, Bart; Liu, Xuan; Bruyndonckx, Peter

    2010-09-01

    Proper selection of modern key components allows eliminating most artifacts in micro-CT and nano-CT systems already during data acquisition. X-ray cameras with direct photon detection allow avoiding ring artifacts. Newly developed fully depleted CCD sensors show an energy response similar to traditional cameras with a thin scintillator, but without any geometrical distortions and flashes from x-ray photons penetrating through the fiber optics. Air-bearing rotation stages and piezo-positioning minimizes mechanical inaccuracies in acquiring angular projections. Beam hardening can be eliminated by energy-selective photon counting imaging.

  16. Micro-CT as a guide for clinical CT development

    NASA Astrophysics Data System (ADS)

    Ritman, Erik L.; Eaker, Diane R.; Jorgensen, Steven M.

    2006-08-01

    Micro-CT, with voxel size ~10 -5 mm 3, has a great advantage over traditional microscopic methods in its ability to generate detailed 3D images in relatively large, opaque, volumes such as an intact mouse femur, heart or kidney. In addition to providing new insights into tissue structure-to-function interrelationships, micro-CT can contribute to suggesting new applications of clinical CT imaging such as: A. The spatio-density-temporal resolution that is needed to: 1) Quantitate an organ's Basic Functional Unit (smallest collection of diverse cells that behaves like the organ), which requires voxels less than 10 -4 mm 3 in volume; 2) Quantitate new vessel growth which manifests as increased x-ray contrast enhancement in tissues during passage of a bolus of intravascular contrast agent; 3) Quantitate endothelial integrity by the movement of x-ray contrast agents across the endothelial inner lining of vessel walls. B. The use of x-ray scatter for providing the contrast amongst soft tissue components and/or their interfaces for enhanced discrimination of nerve and muscular/tendon fiber directions.

  17. Implementation of interior micro-CT on a carbon nanotube dynamic micro-CT scanner for lower radiation dose

    NASA Astrophysics Data System (ADS)

    Gong, Hao; Lu, Jianping; Zhou, Otto; Cao, Guohua

    2015-03-01

    Micro-CT is a high-resolution volumetric imaging tool that provides imaging evaluations for many preclinical applications. However, the relatively high cumulative radiation dose from micro-CT scans could lead to detrimental influence on the experimental outcomes or even the damages of specimens. Interior micro-computed tomography (micro- CT) produces exact tomographic images of an interior region-of-interest (ROI) embedded within an object from truncated projection data. It holds promises for many biomedical applications with significantly reduced radiation doses. Here, we present our first implementation of an interior micro-CT system using a carbon nanotube (CNT) field-emission microfocus x-ray source. The system has two modes - interior micro-CT mode and global micro-CT mode, which is realized with a detachable x-ray beam collimator at the source side. The interior mode has an effective field-of-view (FOV) of about 10mm in diameter, while for the global mode the FOV is about 40mm in diameter. We acquired CT data in these two modes from a mouse-sized phantom, and compared the reconstructed image qualities and the associated radiation exposures. Interior ROI reconstruction was achieved by using our in-house developed reconstruction algorithm. Overall, interior micro-CT demonstrated comparable image quality to the conventional global micro-CT. Radiation doses measured by an ion chamber show that interior micro-CT yielded significant dose reduction (up to 83%).

  18. Infrared micro-optics technologies

    NASA Astrophysics Data System (ADS)

    Krogmann, Dirk; Tholl, Hans D.

    2004-08-01

    Bodenseewerk GmbH generally works on challenging projects comprising Microsystems, e.g. micro-optics (micro-lenses, micro-mirrors). We utilize state-of-the-art laboratory equipment and simulation software (e.g. optical design with ZEMAX, ASAP and GLAD). Our recent activities on the development of several infrared micro-optical devices focus on high speed imaging of scenes with high angular resolution including the analysis of physical properties of the detected light (e.g. spectral content, polarization) utilizing staring IR sensors with focal-plane-arrays operating in a snap shot mode at high frame rates. We report about the development of so called micro-optical multiplexers which: (a) comprise micro-optical arrays and electro-mechanical micro-actuators, (b) image several fields of view with high resolution onto a single focal-plane-array, (c) image several fields of view with enhanced spatial resolution [by the factor of four compared to (b)] in a modified realization onto one focal-plane-array and (d) analyze the spectral content of an image using a single-band photon detector-array and multi-frame processing. The micro-opto-electro-mechanical multiplexer (MOEM) systems all consist of a primary objective, a MOEM image-steering respectively image coding device and a secondary objective. The primary objective images one or more suitable formed individual fields of view onto a common intermediate image plane. The MOEM devices comprise combinations of focusing and defocusing micro-lens-arrays, micro-shutter-arrays and micro-filter-arrays which are mounted parallel to each other near the intermediate image plane. The MOEM devices exhibit their above mentioned function modes by laterally displacing the micro-arrays with the help of modern micro-actuators. The secondary objective is utilized as relay optical stage. A modern common focal-plane-array is used as detector device. The micro-actuators responsible for the relative displacement of the micro-arrays are highly

  19. Optical-CT scanning of polymer gels

    PubMed Central

    Oldham, M

    2006-01-01

    The application of optical-CT scanning to achieve accurate high-resolution 3D dosimetry is a subject of current interest. The purpose of this paper is to provide a brief overview of past research and achievements in optical-CT polymer gel dosimetry, and to review current issues and challenges. The origins of optical-CT imaging of light-scattering polymer gels are reviewed. Techniques to characterize and optimize optical-CT performance are presented. Particular attention is given to studies of artifacts in optical-CT imaging, an important area that has not been well studied to date. The technique of optical-CT simulation by Monte-Carlo modeling is introduced as a tool to explore such artifacts. New simulation studies are presented and compared with experimental data. PMID:17082823

  20. High resolution X-ray micro-CT of ultra-thin wall space components

    NASA Astrophysics Data System (ADS)

    Roth, D. J.; Rauser, R. W.; Bowman, R. R.; Bonacuse, P. J.; Martin, R. E.; Locci, I. E.; Kelley, M.

    2013-01-01

    A high resolution micro-CT system has been assembled and is being used to provide optimal characterization for ultra-thin wall space components. The Glenn Research Center NDE Sciences Team, using this CT system, has assumed the role of inspection vendor for the Advanced Stirling Convertor (ASC) project at NASA. This article will discuss many aspects of the development of the CT scanning for this type of component, including CT system overview; inspection requirements; process development, software utilized and developed to visualize, process, and analyze results; calibration sample development; results on actual samples; correlation with optical/SEM characterization; CT modeling; and development of automatic flaw recognition software.

  1. Latching micro optical switch

    DOEpatents

    Garcia, Ernest J; Polosky, Marc A

    2013-05-21

    An optical switch reliably maintains its on or off state even when subjected to environments where the switch is bumped or otherwise moved. In addition, the optical switch maintains its on or off state indefinitely without requiring external power. External power is used only to transition the switch from one state to the other. The optical switch is configured with a fixed optical fiber and a movable optical fiber. The movable optical fiber is guided by various actuators in conjunction with a latching mechanism that configure the switch in one position that corresponds to the on state and in another position that corresponds to the off state.

  2. Fiber optic micro accelerometer

    DOEpatents

    Swierkowski, Steve P.

    2005-07-26

    An accelerometer includes a wafer, a proof mass integrated into the wafer, at least one spring member connected to the proof mass, and an optical fiber. A Fabry-Perot cavity is formed by a partially reflective surface on the proof mass and a partially reflective surface on the end of the optical fiber. The two partially reflective surfaces are used to detect movement of the proof mass through the optical fiber, using an optical detection system.

  3. Comparison of 4D-microSPECT and microCT for murine cardiac function

    PubMed Central

    Befera, Nicholas T.; Badea, Cristian T.; Johnson, G. Allan

    2014-01-01

    Purpose The objective of this study was to compare a new generation of four-dimensional (4D) microSPECT with microCT for quantitative in vivo assessment of murine cardiac function. Procedures 4D isotropic cardiac images were acquired from normal C57BL/6 mice with either microSPECT at 350-micron resolution (n=6) or microCT at 88-micron resolution (n=6). One additional mouse with myocardial infarction (MI) was scanned with both modalities. Prior to imaging, mice were injected with either 99mTc -tetrofosmin for microSPECT, or a liposomal blood pool contrast agent for microCT. Segmentation of the left ventricle (LV) was performed using Vitrea (Vital Images) software, to derive global and regional function. Results Measures of global LV function between microSPECT and microCT groups were comparable (e.g. ejection fraction=71±6%-microSPECT and 68±4%-microCT). Regional functional indices (wall motion, wall thickening, regional ejection fraction) were also similar for the two modalities. In the mouse with MI, microSPECT identified a large perfusion defect that was not evident with microCT. Conclusions Despite lower spatial resolution, microSPECT was comparable to microCT in the quantitative evaluation of cardiac function. MicroSPECT offers an advantage over microCT in the ability to evaluate myocardial perfusion radiotracer distribution and function simultaneously. MicroSPECT should be considered as an alternative to microCT and MR for preclinical cardiac imaging in the mouse. PMID:24037175

  4. Spectral optimization for micro-CT

    SciTech Connect

    Hupfer, Martin; Nowak, Tristan; Brauweiler, Robert; Eisa, Fabian; Kalender, Willi A.

    2012-06-15

    Purpose: To optimize micro-CT protocols with respect to x-ray spectra and thereby reduce radiation dose at unimpaired image quality. Methods: Simulations were performed to assess image contrast, noise, and radiation dose for different imaging tasks. The figure of merit used to determine the optimal spectrum was the dose-weighted contrast-to-noise ratio (CNRD). Both optimal photon energy and tube voltage were considered. Three different types of filtration were investigated for polychromatic x-ray spectra: 0.5 mm Al, 3.0 mm Al, and 0.2 mm Cu. Phantoms consisted of water cylinders of 20, 32, and 50 mm in diameter with a central insert of 9 mm which was filled with different contrast materials: an iodine-based contrast medium (CM) to mimic contrast-enhanced (CE) imaging, hydroxyapatite to mimic bone structures, and water with reduced density to mimic soft tissue contrast. Validation measurements were conducted on a commercially available micro-CT scanner using phantoms consisting of water-equivalent plastics. Measurements on a mouse cadaver were performed to assess potential artifacts like beam hardening and to further validate simulation results. Results: The optimal photon energy for CE imaging was found at 34 keV. For bone imaging, optimal energies were 17, 20, and 23 keV for the 20, 32, and 50 mm phantom, respectively. For density differences, optimal energies varied between 18 and 50 keV for the 20 and 50 mm phantom, respectively. For the 32 mm phantom and density differences, CNRD was found to be constant within 2.5% for the energy range of 21-60 keV. For polychromatic spectra and CMs, optimal settings were 50 kV with 0.2 mm Cu filtration, allowing for a dose reduction of 58% compared to the optimal setting for 0.5 mm Al filtration. For bone imaging, optimal tube voltages were below 35 kV. For soft tissue imaging, optimal tube settings strongly depended on phantom size. For 20 mm, low voltages were preferred. For 32 mm, CNRD was found to be almost independent of

  5. Reconstruction algorithm improving the spatial resolution of Micro-CT

    NASA Astrophysics Data System (ADS)

    Fu, Jian; Wei, Dongbo; Li, Bing; Zhang, Lei

    2008-03-01

    X-ray Micro computed tomography (Micro-CT) enables nondestructive visualization of the internal structure of objects with high-resolution images and plays an important role for industrial nondestructive testing, material evaluation and medical researches. Because the micro focus is much smaller than the ordinary focus, the geometry un-sharpness of Micro-CT projection is several decuples less than that of ordinary CT systems. So the scan conditions with high geometry magnification can be adopted to acquire the projection data with high sampling frequency. Based on this feature, a new filter back projection reconstruction algorithm is researched to improve the spatial resolution of Micro-CT. This algorithm permits the reconstruction center at any point on the line connecting the focus and the rotation center. It can reconstruct CT images with different geometry magnification by adjusting the position of the reconstruction center. So it can make the best of the above feature to improve the spatial resolution of Micro-CT. The computer simulation and the CT experiment of a special spatial resolution phantom are executed to check the validity of this method. The results demonstrate the effect of the new algorithm. Analysis shows that the spatial resolution can be improved 50%.

  6. Current status of developments and applications of micro-CT.

    PubMed

    Ritman, Erik L

    2011-08-15

    Use of microscopic computed-tomography (micro-CT) scanning continues to grow in biomedical research. Laboratory-based micro-CT scanners, laboratory-based nano-CT scanners, and integrated micro-CT/SPECT and micro-CT/PET scanners are now manufactured for "turn-key" operation by a number of commercial vendors. In recent years a number of technical developments in X-ray sources and X-ray imaging arrays have broadened the utility of micro-CT. Of particular interest are photon-counting and energy-resolving detector arrays. These are being explored to maximize micro-CT image grayscale dynamic range and to further increase image contrast by utilizing the unique spectral attenuation characteristics of individual chemical elements. X-ray phase-shift images may increase contrast resolution and reduce radiation exposure. Although radiation exposure is becoming a concern with the drive for increased spatial and temporal resolution, especially for longitudinal studies, gated scans and limited scan-data-set reconstruction algorithms show great potential for keeping radiation exposure to a minimum. PMID:21756145

  7. Dual-energy micro-CT imaging of pulmonary airway obstruction: correlation with micro-SPECT

    NASA Astrophysics Data System (ADS)

    Badea, C. T.; Befera, N.; Clark, D.; Qi, Y.; Johnson, G. A.

    2014-03-01

    To match recent clinical dual energy (DE) CT studies focusing on the lung, similar developments for DE micro-CT of the rodent lung are required. Our group has been actively engaged in designing pulmonary gating techniques for micro- CT, and has also introduced the first DE micro-CT imaging method of the rodent lung. The aim of this study was to assess the feasibility of DE micro-CT imaging for the evaluation of airway obstruction in mice, and to compare the method with micro single photon emission computed tomography (micro-SPECT) using technetium-99m labeled macroaggregated albumin (99mTc-MAA). The results suggest that the induced pulmonary airway obstruction causes either atelectasis, or air-trapping similar to asthma or chronic bronchitis. Atelectasis could only be detected at early time points in DE micro-CT images, and is associated with a large increase in blood fraction and decrease in air fraction. Air trapping had an opposite effect with larger air fraction and decreased blood fraction shown by DE micro-CT. The decrease in perfusion to the hypoventilated lung (hypoxic vasoconstriction) is also seen in micro-SPECT. The proposed DE micro-CT technique for imaging localized airway obstruction performed well in our evaluation, and provides a higher resolution compared to micro-SPECT. Both DE micro-CT and micro-SPECT provide critical, quantitative lung biomarkers for image-based anatomical and functional information in the small animal. The methods are readily linked to clinical methods allowing direct comparison of preclinical and clinical results.

  8. Classification of microcalcifications using micro-CT

    NASA Astrophysics Data System (ADS)

    Temmermans, Frederik; Jansen, Bart; Willekens, Inneke; Van de Casteele, Elke; Deklerck, Rudi; Schelkens, Peter; De Mey, Johan

    2013-09-01

    Microcalcifications are tiny spots of calcium deposit that often occur in female breasts. Microcalcifications are common in healthy woman, but they often are an early sign of breast cancer. On a mammogram; the current standard of care for breast screening; calcifications appear as tiny white dots. They may occur scattered throughout the breast or grouped in clusters. Radiologists determine the suspiciousness based upon several factors, including position, frequency, grouping, evolution compared to prior studies and shape. In this paper, we study micro-CT images of biopsy samples containing microcalcifications. The scanner delivers 3D images with a voxel size of 8.66 μm, i.e. ca. 8 times the spatial resolution of a contemporary digital mammogram. We propose an automated binary classification method of the samples, based upon shape analysis of the microcalcifications. The study is performed on a set of 50 benign and 50 malign samples preserved in paraffin. The ground truth of the classification is based upon anapathological investigation of the paraffin blocks. The results show a sensitivity, i.e. the percentage of correctly classified malign samples, of up to 98% with a specificity of 40%.

  9. Local variations in bone mineral density: a comparison of OCT versus x-ray micro-CT

    NASA Astrophysics Data System (ADS)

    Ugryumova, Nadya; Stevens-Smith, Jenna; Scutt, Andrew; Matcher, Stephen J.

    2008-02-01

    We describe variations in the degree of mineralisation within the subchondral bone plate of the equine metacarpophalangeal joint. A comparison of Optical Coherence Tomography, Micro CT, and SEM techniques was performed. These data are compared between sites on a healthy sample and at points on an osteoarthritically degenerated sample. No significant correlation was found between the optical scattering coefficient and the micro-CT derived BMD for comparisons between different sites on the bone surface. Also OCT demonstrated a larger regional variation in scattering coefficient than did micro CT for bone mineral density. This suggests that the optical scattering coefficient of bone is not related solely to the volume-density of calcium-phosphate. Patches of lower optical scattering coefficient were found in the bone structure that was related to the osteoarthritic lesion area on the overlying cartilage. Areas of microcracking, as revealed by both SEM and micro CT produced distinctive granularity in the OCT images. In further experiments, OCT was compared with micro CT and mechanical strength testing (3-point bending) in a small animal model of cardiovascular disease (cholesterol overload in mice). In the cardiovascular diseased mice, micro-CT of the trabecular bone did not demonstrate a significant change in trabecular bone mineral density before and after administration of the high cholesterol diet. However mechanical testing demonstrated a decrease in mechanical strength and OCT demonstrated a corresponding statistically significant decrease in optical scattering of the bone.

  10. TLD assessment of mouse dosimetry during microCT imaging

    SciTech Connect

    Figueroa, Said Daibes; Winkelmann, Christopher T.; Miller, William H.; Volkert, Wynn A.; Hoffman, Timothy J.

    2008-09-15

    Advances in laboratory animal imaging have provided new resources for noninvasive biomedical research. Among these technologies is microcomputed tomography (microCT) which is widely used to obtain high resolution anatomic images of small animals. Because microCT utilizes ionizing radiation for image formation, radiation exposure during imaging is a concern. The objective of this study was to quantify the radiation dose delivered during a standard microCT scan. Radiation dose was measured using thermoluminescent dosimeters (TLDs), which were irradiated employing an 80 kVp x-ray source, with 0.5 mm Al filtration and a total of 54 mA s for a full 360 deg rotation of the unit. The TLD data were validated using a 3.2 cm{sup 3} CT ion chamber probe. TLD results showed a single microCT scan air kerma of 78.0{+-}5.0 mGy when using a poly(methylmethacrylate) (PMMA) anesthesia support module and an air kerma of 92.0{+-}6.0 mGy without the use of the anesthesia module. The validation CT ion chamber study provided a measured radiation air kerma of 81.0{+-}4.0 mGy and 97.0{+-}5.0 mGy with and without the PMMA anesthesia module, respectively. Internal TLD analysis demonstrated an average mouse organ radiation absorbed dose of 76.0{+-}5.0 mGy. The author's results have defined x-ray exposure for a routine microCT study which must be taken into consideration when performing serial molecular imaging studies involving the microCT imaging modality.

  11. TLD assessment of mouse dosimetry during microCT imaging

    PubMed Central

    Figueroa, Said Daibes; Winkelmann, Christopher T.; Miller, William H.; Volkert, Wynn A.; Hoffman, Timothy J.

    2008-01-01

    Advances in laboratory animal imaging have provided new resources for noninvasive biomedical research. Among these technologies is microcomputed tomography (microCT) which is widely used to obtain high resolution anatomic images of small animals. Because microCT utilizes ionizing radiation for image formation, radiation exposure during imaging is a concern. The objective of this study was to quantify the radiation dose delivered during a standard microCT scan. Radiation dose was measured using thermoluminescent dosimeters (TLDs), which were irradiated employing an 80 kVp x-ray source, with 0.5 mm Al filtration and a total of 54 mA s for a full 360 deg rotation of the unit. The TLD data were validated using a 3.2 cm3 CT ion chamber probe. TLD results showed a single microCT scan air kerma of 78.0±5.0 mGy when using a poly(methylmethacrylate) (PMMA) anesthesia support module and an air kerma of 92.0±6.0 mGy without the use of the anesthesia module. The validation CT ion chamber study provided a measured radiation air kerma of 81.0±4.0 mGy and 97.0±5.0 mGy with and without the PMMA anesthesia module, respectively. Internal TLD analysis demonstrated an average mouse organ radiation absorbed dose of 76.0±5.0 mGy. The author’s results have defined x-ray exposure for a routine microCT study which must be taken into consideration when performing serial molecular imaging studies involving the microCT imaging modality. PMID:18841837

  12. Optimized planar micro-optic concentrator design

    NASA Astrophysics Data System (ADS)

    Pan, Jui-Wen; Su, Yu-Chung; Lee, Sheng-Yi

    2016-06-01

    The structural parameters of a planar micro-optic concentrator are optimized. First, the direct-loss is minimized by altering the relationship between the f-number of the lenslet, the angle of the micro-structure and the ray paths in the planar micro-optic concentrator. Second, the size of the micro-structure is made equal to the mini-blur size of the lenslet in order to reduce the non-direct loss. Last, the f-number and the entrance pupil diameter of the lenslet are determined by the relationships among the f-number, the entrance pupil diameter, the optical efficiency, the acceptance angle and the thickness of the planar micro-optic concentrator from the optical simulation results. For an optimized planar micro-optic concentrator with a 300× concentration, the f-number of the lenslet, the EPD of the lenslet, the angle of the micro-structure and the thickness of the planar micro-optic concentrator are 2.6, 1.49 mm, 120 degrees and 5.97 mm, respectively. For micro-structures 28.95 μm, 51.24 μm and 88.29 μm in size, the half acceptance angles of the planar micro-optic concentrator are 0.115 degrees, 0.275 degrees and 0.55 degrees, respectively, and the optical efficiencies are 81.23%, 71.92% and 50.02%, respectively.

  13. Morphology of Major Stone Types, As Shown by Micro Computed Tomography (micro CT)

    SciTech Connect

    Jackson, Molly E.; Beuschel, Christian A.; McAteer, James A.; Williams, James C.

    2008-09-18

    Micro CT offers the possibility of providing a non-destructive method of stone analysis that allows visualization of 100% of the stone's volume. For the present study, micro CT analysis was completed on stones of known composition with isotropic voxel sizes of either 7 or 9.1 {mu}m. Each mineral type was distinctive, either by x-ray attenuation values or by morphology. Minor components, such as the presence of apatite in oxalate stones, were easily seen. The analysis of stones by micro CT opens up the possibility of exploring the stone as an encapsulated history of the patient's disease, showing changes in mineral deposition with time.

  14. Nondestructive Analysis of Astromaterials by Micro-CT and Micro-XRF Analysis for PET Examination

    NASA Technical Reports Server (NTRS)

    Zeigler, R. A.; Righter, K.; Allen, C. C.

    2013-01-01

    An integral part of any sample return mission is the initial description and classification of returned samples by the preliminary examination team (PET). The goal of the PET is to characterize and classify returned samples and make this information available to the larger research community who then conduct more in-depth studies on the samples. The PET tries to minimize the impact their work has on the sample suite, which has in the past limited the PET work to largely visual, nonquantitative measurements (e.g., optical microscopy). More modern techniques can also be utilized by a PET to nondestructively characterize astromaterials in much more rigorous way. Here we discuss our recent investigations into the applications of micro-CT and micro-XRF analyses with Apollo samples and ANSMET meteorites and assess the usefulness of these techniques in future PET. Results: The application of micro computerized tomography (micro-CT) to astromaterials is not a new concept. The technique involves scanning samples with high-energy x-rays and constructing 3-dimensional images of the density of materials within the sample. The technique can routinely measure large samples (up to approx. 2700 cu cm) with a small individual voxel size (approx. 30 cu m), and has the sensitivity to distinguish the major rock forming minerals and identify clast populations within brecciated samples. We have recently run a test sample of a terrestrial breccia with a carbonate matrix and multiple igneous clast lithologies. The test results are promising and we will soon analyze a approx. 600 g piece of Apollo sample 14321 to map out the clast population within the sample. Benchtop micro x-ray fluorescence (micro-XRF) instruments can rapidly scan large areas (approx. 100 sq cm) with a small pixel size (approx. 25 microns) and measure the (semi) quantitative composition of largely unprepared surfaces for all elements between Be and U, often with sensitivity on the order of a approx. 100 ppm. Our recent

  15. Interior micro-CT with an offset detector

    SciTech Connect

    Sharma, Kriti Sen; Gong, Hao; Ghasemalizadeh, Omid; Yu, Hengyong; Wang, Ge

    2014-06-15

    Purpose: The size of field-of-view (FOV) of a microcomputed tomography (CT) system can be increased by offsetting the detector. The increased FOV is beneficial in many applications. All prior investigations, however, have been focused to the case in which the increased FOV after offset-detector acquisition can cover the transaxial extent of an object fully. Here, the authors studied a new problem where the FOV of a micro-CT system, although increased after offset-detector acquisition, still covers an interior region-of-interest (ROI) within the object. Methods: An interior-ROI-oriented micro-CT scan with an offset detector poses a difficult reconstruction problem, which is caused by both detector offset and projection truncation. Using the projection completion techniques, the authors first extended three previous reconstruction methods from offset-detector micro-CT to offset-detector interior micro-CT. The authors then proposed a novel method which combines two of the extended methods using a frequency split technique. The authors tested the four methods with phantom simulations at 9.4%, 18.8%, 28.2%, and 37.6% detector offset. The authors also applied these methods to physical phantom datasets acquired at the same amounts of detector offset from a customized micro-CT system. Results: When the detector offset was small, all reconstruction methods showed good image quality. At large detector offset, the three extended methods gave either visible shading artifacts or high deviation of pixel value, while the authors’ proposed method demonstrated no visible artifacts and minimal deviation of pixel value in both the numerical simulations and physical experiments. Conclusions: For an interior micro-CT with an offset detector, the three extended reconstruction methods can perform well at a small detector offset but show strong artifacts at a large detector offset. When the detector offset is large, the authors’ proposed reconstruction method can outperform the three

  16. A preliminary study on a dual-modality OPT/micro-CT system

    NASA Astrophysics Data System (ADS)

    Yang, Yujie; Di, Dong; Shi, Liangliang; Wang, Jun; Hui, Hui; Yang, Xin; Tian, Jie

    2015-03-01

    Optical projection tomography (OPT) is a mesoscopic scale optical imaging technique for specimens between 1mm and 10mm. Although OPT is widely used for in vivo and ex vivo imaging, its applications in high intensity tissues such as bone and thick samples are limited due to the strong absorption of the light. In contrast, X-ray micro-CT is suitable for high intensity tissue imaging but its contrast of soft tissue is poor. Therefore, imaging tools with both strong penetration and high contrast are in great demand. To address this issue, we develop a dual-modality system integrating both OPT and micro-CT. In this paper, this dual-modality system is applied to dynamic imaging of a clearing process of a mouse paw. The clearing process is essential in OPT when imaging thick or intensity tissues since it can make high intensity tissues optically transparent. In our experiment, we scan the mouse paw with our system - before, during and after optical clearing. Each time we scan CT first and then the OPT. After acquisition, 3-dimentional volumes of OPT and CT are reconstructed separately. Then we use a rigid image registration algorithm to register these volumes. Finally, the volumes are merged together. The experimental results show our bimodal system performs better than single OPT or CT system when processing tissues with both high intensity and soft parts.

  17. High Resolution X-Ray Micro-CT of Ultra-Thin Wall Space Components

    NASA Technical Reports Server (NTRS)

    Roth, Don J.; Rauser, R. W.; Bowman, Randy R.; Bonacuse, Peter; Martin, Richard E.; Locci, I. E.; Kelley, M.

    2012-01-01

    A high resolution micro-CT system has been assembled and is being used to provide optimal characterization for ultra-thin wall space components. The Glenn Research Center NDE Sciences Team, using this CT system, has assumed the role of inspection vendor for the Advanced Stirling Convertor (ASC) project at NASA. This article will discuss many aspects of the development of the CT scanning for this type of component, including CT system overview; inspection requirements; process development, software utilized and developed to visualize, process, and analyze results; calibration sample development; results on actual samples; correlation with optical/SEM characterization; CT modeling; and development of automatic flaw recognition software. Keywords: Nondestructive Evaluation, NDE, Computed Tomography, Imaging, X-ray, Metallic Components, Thin Wall Inspection

  18. Micro benchtop optics by bulk silicon micromachining

    DOEpatents

    Lee, Abraham P.; Pocha, Michael D.; McConaghy, Charles F.; Deri, Robert J.

    2000-01-01

    Micromachining of bulk silicon utilizing the parallel etching characteristics of bulk silicon and integrating the parallel etch planes of silicon with silicon wafer bonding and impurity doping, enables the fabrication of on-chip optics with in situ aligned etched grooves for optical fibers, micro-lenses, photodiodes, and laser diodes. Other optical components that can be microfabricated and integrated include semi-transparent beam splitters, micro-optical scanners, pinholes, optical gratings, micro-optical filters, etc. Micromachining of bulk silicon utilizing the parallel etching characteristics thereof can be utilized to develop miniaturization of bio-instrumentation such as wavelength monitoring by fluorescence spectrometers, and other miniaturized optical systems such as Fabry-Perot interferometry for filtering of wavelengths, tunable cavity lasers, micro-holography modules, and wavelength splitters for optical communication systems.

  19. Recent micro-CT scanner developments at UGCT

    NASA Astrophysics Data System (ADS)

    Dierick, Manuel; Van Loo, Denis; Masschaele, Bert; Van den Bulcke, Jan; Van Acker, Joris; Cnudde, Veerle; Van Hoorebeke, Luc

    2014-04-01

    This paper describes two X-ray micro-CT scanners which were recently developed to extend the experimental possibilities of microtomography research at the Centre for X-ray Tomography (www.ugct.ugent.be) of the Ghent University (Belgium). The first scanner, called Nanowood, is a wide-range CT scanner with two X-ray sources (160 kVmax) and two detectors, resolving features down to 0.4 μm in small samples, but allowing samples up to 35 cm to be scanned. This is a sample size range of 3 orders of magnitude, making this scanner well suited for imaging multi-scale materials such as wood, stone, etc. Besides the traditional cone-beam acquisition, Nanowood supports helical acquisition, and it can generate images with significant phase-contrast contributions. The second scanner, known as the Environmental micro-CT scanner (EMCT), is a gantry based micro-CT scanner with variable magnification for scanning objects which are not easy to rotate in a standard micro-CT scanner, for example because they are physically connected to external experimental hardware such as sensor wiring, tubing or others. This scanner resolves 5 μm features, covers a field-of-view of about 12 cm wide with an 80 cm vertical travel range. Both scanners will be extensively described and characterized, and their potential will be demonstrated with some key application results.

  20. 4D micro-CT using fast prospective gating

    NASA Astrophysics Data System (ADS)

    Guo, Xiaolian; Johnston, Samuel M.; Qi, Yi; Johnson, G. Allan; Badea, Cristian T.

    2012-01-01

    Micro-CT is currently used in preclinical studies to provide anatomical information. But, there is also significant interest in using this technology to obtain functional information. We report here a new sampling strategy for 4D micro-CT for functional cardiac and pulmonary imaging. Rapid scanning of free-breathing mice is achieved with fast prospective gating (FPG) implemented on a field programmable gate array. The method entails on-the-fly computation of delays from the R peaks of the ECG signals or the peaks of the respiratory signals for the triggering pulses. Projection images are acquired for all cardiac or respiratory phases at each angle before rotating to the next angle. FPG can deliver the faster scan time of retrospective gating (RG) with the regular angular distribution of conventional prospective gating for cardiac or respiratory gating. Simultaneous cardio-respiratory gating is also possible with FPG in a hybrid retrospective/prospective approach. We have performed phantom experiments to validate the new sampling protocol and compared the results from FPG and RG in cardiac imaging of a mouse. Additionally, we have evaluated the utility of incorporating respiratory information in 4D cardiac micro-CT studies with FPG. A dual-source micro-CT system was used for image acquisition with pulsed x-ray exposures (80 kVp, 100 mA, 10 ms). The cardiac micro-CT protocol involves the use of a liposomal blood pool contrast agent containing 123 mg I ml-1 delivered via a tail vein catheter in a dose of 0.01 ml g-1 body weight. The phantom experiment demonstrates that FPG can distinguish the successive phases of phantom motion with minimal motion blur, and the animal study demonstrates that respiratory FPG can distinguish inspiration and expiration. 4D cardiac micro-CT imaging with FPG provides image quality superior to RG at an isotropic voxel size of 88 µm and 10 ms temporal resolution. The acquisition time for either sampling approach is less than 5 min. The

  1. Scout-view assisted interior micro-CT

    NASA Astrophysics Data System (ADS)

    Sharma, Kriti Sen; Holzner, Christian; Vasilescu, Dragoş M.; Jin, Xin; Narayanan, Shree; Agah, Masoud; Hoffman, Eric A.; Yu, Hengyong; Wang, Ge

    2013-06-01

    Micro computed tomography (micro-CT) is a widely-used imaging technique. A challenge of micro-CT is to quantitatively reconstruct a sample larger than the field-of-view (FOV) of the detector. This scenario is characterized by truncated projections and associated image artifacts. However, for such truncated scans, a low resolution scout scan with an increased FOV is frequently acquired so as to position the sample properly. This study shows that the otherwise discarded scout scans can provide sufficient additional information to uniquely and stably reconstruct the interior region of interest. Two interior reconstruction methods are designed to utilize the multi-resolution data without significant computational overhead. While most previous studies used numerically truncated global projections as interior data, this study uses truly hybrid scans where global and interior scans were carried out at different resolutions. Additionally, owing to the lack of standard interior micro-CT phantoms, we designed and fabricated novel interior micro-CT phantoms for this study to provide means of validation for our algorithms. Finally, two characteristic samples from separate studies were scanned to show the effect of our reconstructions. The presented methods show significant improvements over existing reconstruction algorithms.

  2. Wafer-scale micro-optics fabrication

    NASA Astrophysics Data System (ADS)

    Voelkel, Reinhard

    2012-07-01

    Micro-optics is an indispensable key enabling technology for many products and applications today. Probably the most prestigious examples are the diffractive light shaping elements used in high-end DUV lithography steppers. Highly-efficient refractive and diffractive micro-optical elements are used for precise beam and pupil shaping. Micro-optics had a major impact on the reduction of aberrations and diffraction effects in projection lithography, allowing a resolution enhancement from 250 nm to 45 nm within the past decade. Micro-optics also plays a decisive role in medical devices (endoscopes, ophthalmology), in all laser-based devices and fiber communication networks, bringing high-speed internet to our homes. Even our modern smart phones contain a variety of micro-optical elements. For example, LED flash light shaping elements, the secondary camera, ambient light and proximity sensors. Wherever light is involved, micro-optics offers the chance to further miniaturize a device, to improve its performance, or to reduce manufacturing and packaging costs. Wafer-scale micro-optics fabrication is based on technology established by the semiconductor industry. Thousands of components are fabricated in parallel on a wafer. This review paper recapitulates major steps and inventions in wafer-scale micro-optics technology. The state-of-the-art of fabrication, testing and packaging technology is summarized.

  3. Development of Independent-type Optical CT

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Tatsushi; Shiozawa, Daigoro; Rokunohe, Toshiaki; Kida, Junzo; Zhang, Wei

    Optical current transformers (optical CTs) have features that they can be made much smaller and lighter than conventional electromagnetic induction transformers by their simple structure, and contribute to improvement of equipment reliability because of their excellent surge resistance performance. Authors consider optical CTs to be next generation transformers, and are conducting research and development of optical CTs aiming to apply to measuring and protection in electric power systems. Specifically we developed an independent-type optical CT by utilizing basic data of optical CTs accumulated for large current characteristics, temperature characteristics, vibration resistance characteristics, and so on. In performance verification, type tests complying with IEC standards, such as short-time current tests, insulation tests, accuracy tests, and so on, showed good results. This report describes basic principle and configuration of optical CTs. After that, as basic characteristics of optical CTs, conditions and results of verification tests for dielectric breakdown characteristics of sensor fibers, large current characteristics, temperature characteristics, and vibration resistance characteristics are described. Finally, development outline of the independent-type optical CT aiming to apply to all digital substation and its type tests results are described.

  4. Trends in the micro- and nano-CT literature

    NASA Astrophysics Data System (ADS)

    Stock, S. R.

    2008-08-01

    Trends in the type and distribution of published micro- and nano-CT studies are reviewed in this paper. The focus is on the temporal evolution of the literature over the last decade and on the distribution of study types and on the distribution of locations where such studies have appeared. Data analysis and representations are also briefly considered.

  5. Assessing Cardiac Injury in Mice With Dual Energy-MicroCT, 4D-MicroCT, and MicroSPECT Imaging After Partial Heart Irradiation

    SciTech Connect

    Lee, Chang-Lung; Min, Hooney; Befera, Nicholas; Clark, Darin; Qi, Yi; Das, Shiva; Johnson, G. Allan; Badea, Cristian T.; Kirsch, David G.

    2014-03-01

    Purpose: To develop a mouse model of cardiac injury after partial heart irradiation (PHI) and to test whether dual energy (DE)-microCT and 4-dimensional (4D)-microCT can be used to assess cardiac injury after PHI to complement myocardial perfusion imaging using micro-single photon emission computed tomography (SPECT). Methods and Materials: To study cardiac injury from tangent field irradiation in mice, we used a small-field biological irradiator to deliver a single dose of 12 Gy x-rays to approximately one-third of the left ventricle (LV) of Tie2Cre; p53{sup FL/+} and Tie2Cre; p53{sup FL/−} mice, where 1 or both alleles of p53 are deleted in endothelial cells. Four and 8 weeks after irradiation, mice were injected with gold and iodinated nanoparticle-based contrast agents, and imaged with DE-microCT and 4D-microCT to evaluate myocardial vascular permeability and cardiac function, respectively. Additionally, the same mice were imaged with microSPECT to assess myocardial perfusion. Results: After PHI with tangent fields, DE-microCT scans showed a time-dependent increase in accumulation of gold nanoparticles (AuNp) in the myocardium of Tie2Cre; p53{sup FL/−} mice. In Tie2Cre; p53{sup FL/−} mice, extravasation of AuNp was observed within the irradiated LV, whereas in the myocardium of Tie2Cre; p53{sup FL/+} mice, AuNp were restricted to blood vessels. In addition, data from DE-microCT and microSPECT showed a linear correlation (R{sup 2} = 0.97) between the fraction of the LV that accumulated AuNp and the fraction of LV with a perfusion defect. Furthermore, 4D-microCT scans demonstrated that PHI caused a markedly decreased ejection fraction, and higher end-diastolic and end-systolic volumes, to develop in Tie2Cre; p53{sup FL/−} mice, which were associated with compensatory cardiac hypertrophy of the heart that was not irradiated. Conclusions: Our results show that DE-microCT and 4D-microCT with nanoparticle-based contrast agents are novel imaging approaches

  6. Passive ring resonator micro-optical gyroscopes

    NASA Astrophysics Data System (ADS)

    Venediktov, V. Yu; Filatov, Yu V.; Shalymov, E. V.

    2016-05-01

    This paper reviews recent advances in passive micro-optical gyroscopes. In the last decade, most research effort in the area of micro-optical gyros has been concentrated on a configuration that takes advantage of a single-mode passive ring resonator, which is usually fabricated using integrated optical technologies. The dimensions of such micro-optical gyros are comparable to those of micromechanical gyroscopes (area of 10 to 100 mm2) and their sensitivity is considerably better than the sensitivity of the latter, approaching that of fibre-optic and laser gyros. Moreover, microoptical gyros can be made as a single integrated circuit, like the micromechanical gyros, but they have no movable parts, in contrast to their micromechanical counterparts. We also describe the development and investigation of micro-optical gyros produced in our studies.

  7. MicroCT: Automated Analysis of CT Reconstructed Data of Home Made Explosive Materials Using the Matlab MicroCT Analysis GUI

    SciTech Connect

    Seetho, I M; Brown, W D; Kallman, J S; Martz, H E; White, W T

    2011-09-22

    This Standard Operating Procedure (SOP) provides the specific procedural steps for analyzing reconstructed CT images obtained under the IDD Standard Operating Procedures for data acquisition [1] and MicroCT image reconstruction [2], per the IDD Quality Assurance Plan for MicroCT Scanning [3]. Although intended to apply primarily to MicroCT data acquired in the HEAFCAT Facility at LLNL, these procedures may also be applied to data acquired at Tyndall from the YXLON cabinet and at TSL from the HEXCAT system. This SOP also provides the procedural steps for preparing the tables and graphs to be used in the reporting of analytical results. This SOP applies to production work - for R and D there are two other semi-automated methods as given in [4, 5].

  8. MicroCT: Semi-Automated Analysis of CT Reconstructed Data of Home Made Explosive Materials Using the Matlab MicroCT Analysis GUI

    SciTech Connect

    Seetho, I M; Brown, W D; Kallman, J S; Martz, H E; White, W T

    2011-09-22

    This Standard Operating Procedure (SOP) provides the specific procedural steps for analyzing reconstructed CT images obtained under the IDD Standard Operating Procedures for data acquisition [1] and MicroCT image reconstruction [2], per the IDD Quality Assurance Plan for MicroCT Scanning [3]. Although intended to apply primarily to MicroCT data acquired in the HEAFCAT Facility at LLNL, these procedures may also be applied to data acquired at Tyndall from the YXLON cabinet and at TSL from the HEXCAT system. This SOP also provides the procedural steps for preparing the tables and graphs to be used in the reporting of analytical results. This SOP applies to R and D work - for production applications, use [4].

  9. Self-assembly micro optical filter

    NASA Astrophysics Data System (ADS)

    Zhang, Ping (Cerina); Le, Kevin; Malalur-Nagaraja-Rao, Smitha; Hsu, Lun-Chen; Chiao, J.-C.

    2006-01-01

    Optical communication and sensor industry face critical challenges in manufacturing for system integration. Due to the assembly complexity and integration platform variety, micro optical components require costly alignment and assembly procedures, in which many required manual efforts. Consequently, self-assembly device architectures have become a great interest and could provide major advantages over the conventional optical devices. In this paper, we discussed a self-assembly integration platform for micro optical components. To demonstrate the adaptability and flexibility of the proposed optical device architectures, we chose a commercially available MEMS fabrication foundry service - MUMPs (Multi-User MEMS Process). In this work, polysilicon layers of MUMPS are used as the 3-D structural material for construction of micro component framework and actuators. However, because the polysilicon has high absorption in the visible and near infrared wavelength ranges, it is not suitable for optical interaction. To demonstrate the required optical performance, hybrid integration of materials was proposed and implemented. Organic compound materials were applied on the silicon-based framework to form the required optical interfaces. Organic compounds provide good optical transparency, flexibility to form filters or lens and inexpensive manufacturing procedures. In this paper, we have demonstrated a micro optical filter integrated with self-assembly structures. We will discuss the self-assembly mechanism, optical filter designs, fabrication issues and results.

  10. Ring artifact correction for high-resolution micro CT.

    PubMed

    Kyriakou, Yiannis; Prell, Daniel; Kalender, Willi A

    2009-09-01

    In high-resolution micro CT using flat detectors (FD), imperfect or defect detector elements may cause concentric-ring artifacts due to their continuous over- or underestimation of attenuation values, which often disturb image quality. We here present a dedicated image-based ring artifact correction method for high-resolution micro CT, based on median filtering of the reconstructed image and working on a transformed version of the reconstructed images in polar coordinates. This post-processing method reduced ring artifacts in the reconstructed images and improved image quality for phantom and in in vivo scans. Noise and artifacts were reduced both in transversal and in multi-planar reformations along the longitudinal axis. PMID:19661571

  11. Newt limb regeneration studied with synchrotron micro-CT

    NASA Astrophysics Data System (ADS)

    Stock, Stuart R.; Ignatiev, Konstantin I.; Simon, Hans-Georg; De Carlo, Francesco

    2004-10-01

    Newts are the most developed vertebrates which retain the ability as adults to regenerate missing limbs; they are, therefore, of great interest in terms understanding how such regeneration could be triggered in mammals. In this study, synchrotron microCT was used to study bone microstructure in control forelimbs and in forelimbs regenerated for periods from 37 to 85 days. The bone microstructure in newts has been largely neglected, and interesting patterns within the original bone and in the regenerating arm and hand are described. Periosteal bone formation in the regenerating arm and finger bones, delayed ossification of carpal (but not metacarpal) bones and the complex microstructure of the original carpal bones are areas where microCT reveals detail of particular interest.

  12. Thermoluminescent Dosimetry: A Preliminary Study for microCT Applications

    SciTech Connect

    Montano Garcia, C.; Rodriguez-Villafuerte, M.; Martinez-Davalos, A.; Brandan, M. E.; Ruiz-Trejo, C.

    2006-09-08

    Preliminary measurements for microCT dosimetry are reported in this work, using TLD-100 crystals (1x1x1 mm3) within a solid water phantom specially designed with approximate dimensions of a mouse. A dose dependence as a function of radial distance and position along the axis of the phantom was found. Because of the smaller doses used in this work we can say that it is feasible to perform dosimetry measurements with high accuracy using TLD-100 microcubes.

  13. Simulation of trabecular mineralization measurements in micro-CT

    NASA Astrophysics Data System (ADS)

    Prevrhal, Sven

    2006-08-01

    Micro-CT for bone structural analysis has progressed from an in-vitro laboratory technique to devices for in-vivo assessment of small animals and the peripheral human skeleton. Currently, topological parameters of bone architecture are the primary goals of analysis. Additional measurement of the density or degree of mineralization (DMB) of trabecular and cortical bone at the microscopic level is desirable to study effects of disease and treatment progress. This information is not commonly extracted because of the challenges of accurate measurement and calibration at the tissue level. To assess the accuracy of micro-CT DMB measurements in a realistic but controlled situation, we prepared bone-mimicking watery solutions at concentrations of 100 to 600 mg/cm3 K2PO4H and scanned them with micro-CT, both in glass vials and microcapillary tubes with inner diameters of 50, 100 and 150 mm to simulate trabecular thickness. Values of the linear attenuation coefficients m in the reconstructed image are commonly affected by beam hardening effects for larger samples and by partial volume effects for small volumes. We implemented an iterative reconstruction technique to reduce beam hardening. Partial voluming was sought to be reduced by excluding voxels near the tube wall. With these two measures, improvement on the constancy of the reconstructed voxel values and linearity with solution concentration could be observed to over 90% accuracy. However, since the expected change in real bone is small more measurements are needed to confirm that micro-CT can indeed be adapted to assess bone mineralization at the tissue level.

  14. Dual modality micro-SPECT and micro-CT for small animal imaging: technical advances and challenges

    NASA Astrophysics Data System (ADS)

    Izaguirre, Enrique W.; Sun, Mingshan; Carver, James; Thompson, Steve; Hasegawa, Bruce H.

    2005-09-01

    Small animal dual modality microSPECT-micro CT has seen many technological advances during recent years. The design of small animal dual modality scanners is a multidisciplinary field, where several interrelated technological problems must be integrated in a complex instrument. This article describes the general concepts that must be taken into consideration during the design process of dual modality microSPECT- microCT scanners. A description of the contemporary scanner technology is presented using the recently designed dual modality micro SPECT -microCT at the Physics Research Laboratory at UCSF. The technology is described with a simple approach to introduce the reader to the complex process of the dual modality scanner design. This article includes a discussion of current technological challenges that have potential to improve or expand the microSPECT-microCT performance and its applications.

  15. Manufacturing: 3D printed micro-optics

    NASA Astrophysics Data System (ADS)

    Juodkazis, Saulius

    2016-08-01

    Uncompromised performance of micro-optical compound lenses has been achieved by high-fidelity shape definition during two-photon absorption microfabrication. The lenses have been made directly onto image sensors and even onto the tip of an optic fibre.

  16. Acoustic emissions in rock deformation experiments under micro-CT

    NASA Astrophysics Data System (ADS)

    Tisato, Nicola; Goodfellow, Sebastian D.; Moulas, Evangelos; Di Toro, Giulio; Young, Paul; Grasselli, Giovanni

    2016-04-01

    The study of acoustic emissions (AE) generated by rocks undergoing deformation has become, in the last decades, one of the most powerful tools for boosting our understanding of the mechanisms which are responsible for rock failures. AE are elastic waves emitted by the local failure of micro- or milli-metric portions of the tested specimen. At the same time, X-ray micro computed tomography (micro-CT) has become an affordable, reliable and powerful tool for imaging the internal structure of rock samples. In particular, micro-CT coupled with a deformation apparatus offers the unique opportunity for observing, without perturbing, the sample while the deformation and the formation of internal structures, such as shear bands, is ongoing. Here we present some preliminary results gathered with an innovative apparatus formed by the X-ray transparent pressure vessel called ERDμ equipped with AE sensors, an AE acquisition system and a micro-CT apparatus available at the University of Toronto. The experiment was performed on a 12 mm diameter 36 mm long porous glass sample which was cut on a 60 deg inclined plane (i.e. saw-cut sample). Etna basaltic sand with size ~1 mm was placed between the two inclined faces forming an inclined fault zone with ~2 mm thickness. The sample assembly was jacketed with a polyefin shrink tube and two AE sensors were glued onto the glass samples above and below the fault zone. The sample was then enclosed in the pressure vessel and confined with compressed air up to 3 MPa. A third AE sensor was placed outside the vessel. The sample was saturated with water and AE were generated by varying the fluid and confining pressure or the vertical force, causing deformations concentrated in the fault zone. Mechanical data and AE traces were collected throughout the entire experiment which lasted ~24 hours. At the same time multiple micro-CT 3D datasets and 2D movie-radiographies were collected, allowing the 3D reconstruction of the deformed sample at

  17. Intramyocardial capillary blood volume estimated by whole-body CT: validation by micro-CT

    NASA Astrophysics Data System (ADS)

    Dong, Yue; Beighley, Patricia E.; Eaker, Diane R.; Zamir, Mair; Ritman, Erik L.

    2008-03-01

    Fast CT has shown that myocardial perfusion (F) is related to myocardial intramuscular blood volume (Bv) as Bv=A*F+B*F 1/2 where A,B are constant coefficients. The goal of this study was to estimate the range of diameters of the vessels that are represented by the A*F term. Pigs were placed in an Electron Beam CT (EBCT) scanner for a perfusion CT scan sequence over 40 seconds after an IV contrast agent injection. Intramyocardial blood volume (Bv) and flow (F) were calculated in a region of the myocardium perfused by the LAD. Coefficients A and B were estimated over the range of F=1-5ml/g/min. After the CT scan, the LAD was injected with Microfil (R) contrast agent following which the myocardium was scanned by micro-CT at 20μm, 4μm and 2.5 μm cubic voxel resolutions. The Bv of the intramyocardial vessels was calculated for diameter ranges d=0-5, 5-10, 10-15, 15-20μm, etc. EBCT-derived data were presented so that it could be directly compared the micro-CT data. The results indicated that the blood in vessels less than 10μm in lumen diameter occupied 0.27-0.42 of total intravascular blood volume, which is in good agreement with EBCT-based values 0.28-0.48 (R2 =0.96). We conclude that whole-body CT image data obtained during the passage of a bolus of IV contrast agent can provide a measure of the intramyocardial intracapillary blood volume.

  18. Advanced lithography for micro-optics

    NASA Astrophysics Data System (ADS)

    Zeitner, U. D.; Kley, E.-B.

    2006-08-01

    Since the beginning of micro-optics fabrication most of the used technologies have been adapted from or are related to semiconductor fabrication techniques. These are widely known and the special microelectronics fabrication tools, especially lithography machines, are available at numerous places. Besides the fact that therefore micro-optics was able to took advantage of the steady development of semiconductor technology this tight linkage has also a lot of drawbacks. The adaptation of element properties to the fabrication limits given by the available technologies is very often connected with compromises in optical performance. In nowadays micro-optics fabrication has reached a level which justifies the development of fabrication tools specialized to its own demands. In the article the special demands of optical microstructures on the fabrication technologies are discussed and newly developed mico-optics fabrication tools are introduced. The first one is an electron-beam lithography machine for use with up substrates up to 300mm large and 15mm thick achieving a very high overlay accuracy and writing speed. The second one is a laser-lithography system capable to expose micro-optical structures onto non-planar substrates.

  19. Nondestructive Analysis of Apollo Samples by Micro-CT and Micro-XRF Analysis: A PET Style Examination

    NASA Technical Reports Server (NTRS)

    Zeigler, Ryan A.

    2014-01-01

    An integral part of any sample return mission is the initial description and classification of returned samples by the preliminary examination team (PET). The goal of a PET is to characterize and classify the returned samples, making this information available to the general research community who can then conduct more in-depth studies on the samples. A PET strives to minimize the impact their work has on the sample suite, which often limits the PET work to largely visual measurements and observations like optical microscopy. More modern techniques can also be utilized by future PET to nondestructively characterize astromaterials in a more rigorous way. Here we present our recent analyses of Apollo samples 14321 and 14305 by micro-CT and micro-XRF (respectively), assess the potential for discovery of "new" Apollo samples for scientific study, and evaluate the usefulness of these techniques in future PET efforts.

  20. Exploring miniature insect brains using micro-CT scanning techniques.

    PubMed

    Smith, Dylan B; Bernhardt, Galina; Raine, Nigel E; Abel, Richard L; Sykes, Dan; Ahmed, Farah; Pedroso, Inti; Gill, Richard J

    2016-01-01

    The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures. PMID:26908205

  1. Exploring miniature insect brains using micro-CT scanning techniques

    PubMed Central

    Smith, Dylan B.; Bernhardt, Galina; Raine, Nigel E.; Abel, Richard L.; Sykes, Dan; Ahmed, Farah; Pedroso, Inti; Gill, Richard J.

    2016-01-01

    The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures. PMID:26908205

  2. Fiber optic engine for micro projection display.

    PubMed

    Arabi, Hesam Edin; An, Sohee; Oh, Kyunghwan

    2010-03-01

    A novel compact optical engine for a micro projector display is experimentally demonstrated, which is composed of RGB light sources, a tapered 3 x 1 Fiber Optic Color Synthesizer (FOCS) along with a fiberized ball-lens, and a two dimensional micro electromechanical scanning mirror. In the proposed optical engine, we successfully employed an all-fiber beam shaping technique combining optical fiber taper and fiberized ball lens that can render a narrow beam and enhance the resolution of the screened image in the far field. Optical performances of the proposed device assembly are investigated in terms of power loss, collimating strength of the collimator assembly, and color gamut of the output. PMID:20389477

  3. Micro electro mechanical system optical switching

    SciTech Connect

    Thorson, Kevin J; Stevens, Rick C; Kryzak, Charles J; Leininger, Brian S; Kornrumpf, William P; Forman, Glenn A; Iannotti, Joseph A; Spahn, Olga B; Cowan, William D; Dagel, Daryl J

    2013-12-17

    The present disclosure includes apparatus, system, and method embodiments that provide micro electo mechanical system optical switching and methods of manufacturing switches. For example, one optical switch embodiment includes at least one micro electro mechanical system type pivot mirror structure disposed along a path of an optical signal, the structure having a mirror and an actuator, and the mirror having a pivot axis along a first edge and having a second edge rotatable with respect to the pivot axis, the mirror being capable of and arranged to be actuated to pivot betweeen a position parallel to a plane of an optical signal and a position substantially normal to the plane of the optical signal.

  4. Full-field optical micro-angiography

    NASA Astrophysics Data System (ADS)

    Wang, Mingyi; Zeng, Yaguang; Liang, Xianjun; Lu, Xuanlong; Feng, Guanping; Han, Dingan; Yang, Guojian

    2014-02-01

    We present a detailed description of full-field optical micro-angiography on the basis of frequency-domain laser speckle imaging with intensity fluctuation modulation (LSI-IFM). The imaging approach works based on the instantaneous local intensity fluctuation realized via the combination of short exposure and low sampling rate of a camera and appropriate magnification of a microscope. In vivo experiments on mouse ear verify the theoretical description we made for the imaging mechanism and demonstrate the ability of LSI-IFM as optical micro-angiography. By introducing a fundus camera into LSI-IFM system, our approach has a potential application in label-free retina optical micro-angiography.

  5. Cochlear anatomy using micro computed tomography (μCT) imaging

    NASA Astrophysics Data System (ADS)

    Kim, Namkeun; Yoon, Yongjin; Steele, Charles; Puria, Sunil

    2008-02-01

    A novel micro computed tomography (μCT) image processing method was implemented to measure anatomical features of the gerbil and chinchilla cochleas, taking into account the bent modailosis axis. Measurements were made of the scala vestibule (SV) area, the scala tympani (SV) area, and the basilar membrane (BM) width using prepared cadaveric temporal bones. 3-D cochlear structures were obtained from the scanned images using a process described in this study. It was necessary to consider the sharp curvature of mododailosis axis near the basal region. The SV and ST areas were calculated from the μCT reconstructions and compared with existing data obtained by Magnetic Resonance Microscopy (MRM), showing both qualitative and quantitative agreement. In addition to this, the width of the BM, which is the distance between the primary and secondary osseous spiral laminae, is calculated for the two animals and compared with previous data from the MRM method. For the gerbil cochlea, which does not have much cartilage in the osseous spiral lamina, the μCT-based BM width measurements show good agreement with previous data. The chinchilla BM, which contains more cartilage in the osseous spiral lamina than the gerbil, shows a large difference in the BM widths between the μCT and MRM methods. The SV area, ST area, and BM width measurements from this study can be used in building an anatomically based mathematical cochlear model.

  6. Scatter corrections for cone beam optical CT

    NASA Astrophysics Data System (ADS)

    Olding, Tim; Holmes, Oliver; Schreiner, L. John

    2009-05-01

    Cone beam optical computed tomography (OptCT) employing the VISTA scanner (Modus Medical, London, ON) has been shown to have significant promise for fast, three dimensional imaging of polymer gel dosimeters. One distinct challenge with this approach arises from the combination of the cone beam geometry, a diffuse light source, and the scattering polymer gel media, which all contribute scatter signal that perturbs the accuracy of the scanner. Beam stop array (BSA), beam pass array (BPA) and anti-scatter polarizer correction methodologies have been employed to remove scatter signal from OptCT data. These approaches are investigated through the use of well-characterized phantom scattering solutions and irradiated polymer gel dosimeters. BSA corrected scatter solutions show good agreement in attenuation coefficient with the optically absorbing dye solutions, with considerable reduction of scatter-induced cupping artifact at high scattering concentrations. The application of BSA scatter corrections to a polymer gel dosimeter lead to an overall improvement in the number of pixel satisfying the (3%, 3mm) gamma value criteria from 7.8% to 0.15%.

  7. Combined Micro-PET/Micro-CT Imaging of Lung Tumours in SPC-raf and SPC-myc Transgenic Mice

    PubMed Central

    Rodt, Thomas; Luepke, Matthias; Boehm, Claudia; Hueper, Katja; Halter, Roman; Glage, Silke; Hoy, Ludwig; Wacker, Frank; Borlak, Juergen; von Falck, Christian

    2012-01-01

    Introduction SPC-raf and SPC-myc transgenic mice develop disseminated and circumscribed lung adenocarcinoma respectively, allowing for assessment of carcinogenesis and treatment strategies. The purpose of this study was to investigate the technical feasibility, the correlation of initial findings to histology and the administered radiation dose of combined micro-PET/micro-CT in these animal models. Material and Methods 14 C57BL/6 mice (4 nontransgenic, 4 SPC-raf transgenic, 6 SPC-myc transgenic) were examined using micro-CT and 18F-Fluoro-deoxyglucose micro-PET in-vivo. Micro-PET data was corrected for random events and scatter prior to reconstruction with a 3D-FORE/2D-OSEM iterative algorithm. Rigid micro-PET/micro-CT registration was performed. Tumour-to-non-tumour ratios were calculated for different lung regions and focal lesions. Diffuse tumour growth was quantified using a semiautomated micro-CT segmentation routine reported earlier. Regional histologic tumour load was assessed using a 4-point rating scale. Gamma radiation dose was determined using thermoluminescence dosimeters. Results Micro-CT allowed visualisation of diffuse and circumscribed tumours in SPC-raf and SPC-myc transgenic animals along with morphology, while micro-PET provided information on metabolism, but lacked morphologic detail. Mean tumour-to-non-tumour ratio was 2.47 for circumscribed lesions. No significant correlation could be shown between histological tumour load and tumour-to-nontumour ratio for diffuse tumours in SPC-raf transgenic animals. Calculation of the expected dose based on gamma dosimetry yielded approximately 140 mGy/micro-PET examination additional to approximately 200 mGy due to micro-CT. Conclusions Combined micro-PET/micro-CT imaging allows for in-vivo assessment of lung tumours in SPC-raf and SPC-myc transgenic mice. The technique has potential for the evaluation of carcinogenesis and treatment strategies in circumscribed lung tumours. PMID:23028537

  8. Fabrication of micro-optical devices

    NASA Technical Reports Server (NTRS)

    Anderson, W. W.; Marley, J.; Gal, George; Purdy, Don

    1993-01-01

    We have fabricated a variety of micro-optic components including Fresnel and non-Frensel lenses, off-axis and dispersive lenses with binary stepped contours, and analog contours. Process details for all lens designs fabricated are given including multistep photolithography for binary fabrication and grayscale mask photolithography for analog fabrication. Reactive ion etching and ion beam milling are described for the binary fabrication process, while ion beam milling was used for the analog fabrication process. Examples of micro-optic components fabricated in both Si and CdTe substrates are given.

  9. Trabecular scaffolds created using micro CT guided fused deposition modeling

    PubMed Central

    Tellis, B.C.; Szivek, J.A.; Bliss, C.L.; Margolis, D.S.; Vaidyanathan, R.K.; Calvert, P.

    2009-01-01

    Free form fabrication and high resolution imaging techniques enable the creation of biomimetic tissue engineering scaffolds. A 3D CAD model of canine trabecular bone was produced via micro CT and exported to a fused deposition modeler, to produce polybutylene terephthalate (PBT) trabeculated scaffolds and four other scaffold groups of varying pore structures. The five scaffold groups were divided into subgroups (n=6) and compression tested at two load rates (49 N/s and 294 N/s). Two groups were soaked in a 25 °C saline solution for 7 days before compression testing. Micro CT was used to compare porosity, connectivity density, and trabecular separation of each scaffold type to a canine trabecular bone sample. At 49 N/s the dry trabecular scaffolds had a compressive stiffness of 4.94±1.19 MPa, similar to the simple linear small pore scaffolds and significantly more stiff (p<0.05) than either of the complex interconnected pore scaffolds. At 294 N/s, the compressive stiffness values for all five groups roughly doubled. Soaking in saline had an insignificant effect on stiffness. The trabecular scaffolds matched bone samples in porosity; however, achieving physiologic connectivity density and trabecular separation will require further refining of scaffold processing. PMID:21461176

  10. Micro-optics in lighting applications

    NASA Astrophysics Data System (ADS)

    Mönch, Wolfgang

    2015-02-01

    The intention of this article is to give a concise overview on current applications of micro-optical components in lighting, including general lighting, automotive lighting, projection, and display backlighting. Regarding the light sources, the focus of this paper is on inorganic light-emitting diodes (LEDs) and the characteristic problems encountered with them. Lasers, laser diodes, and organic light-emitting diodes (OLEDs) are out of scope of this paper. Micro-optical components for current applications of inorganic LEDs may be categorized essentially into three classes: First, components for light shaping, i.e., adjusting the intensity distribution to a desired target; second, components for light homogenization with respect to space and color, and third, large-area micro-optical elements. These large-area elements comprise micro-optical slabs and sheets for guiding, reflection, and refraction of light and are designed without regard to particular details of type, design, arrangement, and layout of the individual light emitters. References are given to textbooks and review articles to guide the interested reader to further and more detailed studies on the problems discussed here.

  11. Methods of in-vivo mouse lung micro-CT

    NASA Astrophysics Data System (ADS)

    Recheis, Wolfgang A.; Nixon, Earl; Thiesse, Jacqueline; McLennan, Geoffrey; Ross, Alan; Hoffman, Eric

    2005-04-01

    Micro-CT will have a profound influence on the accumulation of anatomical and physiological phenotypic changes in natural and transgenetic mouse models. Longitudinal studies will be greatly facilitated, allowing for a more complete and accurate description of events if in-vivo studies are accomplished. The purpose of the ongoing project is to establish a feasible and reproducible setup for in-vivo mouse lung micro-computed tomography (μCT). We seek to use in-vivo respiratory-gated μCT to follow mouse models of lung disease with subsequent recovery of the mouse. Methodologies for optimizing scanning parameters and gating for the in-vivo mouse lung are presented. A Scireq flexiVent ventilated the gas-anesthetized mice at 60 breaths/minute, 30 cm H20 PEEP, 30 ml/kg tidal volume and provided a respiratory signal to gate a Skyscan 1076 μCT. Physiologic monitoring allowed the control of vital functions and quality of anesthesia, e.g. via ECG monitoring. In contrary to longer exposure times with ex-vivo scans, scan times for in-vivo were reduced using 35μm pixel size, 158ms exposure time and 18μm pixel size, 316ms exposure time to reduce motion artifacts. Gating via spontaneous breathing was also tested. Optimal contrast resolution was achieved at 50kVp, 200μA, applying an aluminum filter (0.5mm). There were minimal non-cardiac related motion artifacts. Both 35μm and 1μm voxel size images were suitable for evaluation of the airway lumen and parenchymal density. Total scan times were 30 and 65 minutes respectively. The mice recovered following scanning protocols. In-vivo lung scanning with recovery of the mouse delivered reasonable image quality for longitudinal studies, e.g. mouse asthma models. After examining 10 mice, we conclude μCT is a feasible tool evaluating mouse models of lung pathology in longitudinal studies with increasing anatomic detail available for evaluation as one moves from in-vivo to ex-vivo studies. Further developments include automated

  12. Performance evaluation of the General Electric eXplore CT 120 micro-CT using the vmCT phantom

    NASA Astrophysics Data System (ADS)

    Bahri, M. A.; Warnock, G.; Plenevaux, A.; Choquet, P.; Constantinesco, A.; Salmon, E.; Luxen, A.; Seret, A.

    2011-08-01

    The eXplore CT 120 is the latest generation micro-CT from General Electric. It is equipped with a high-power tube and a flat-panel detector. It allows high resolution and high contrast fast CT scanning of small animals. The aim of this study was to compare the performance of the eXplore CT 120 with that of the eXplore Ultra, its predecessor for which the methodology using the vmCT phantom has already been described [1].The phantom was imaged using typical a rat (fast scan or F) or mouse (in vivo bone scan or H) scanning protocols. With the slanted edge method, a 10% modulation transfer function (MTF) was observed at 4.4 (F) and 3.9-4.4 (H) mm-1 corresponding to 114 μm resolution. A fairly larger MTF was obtained by the coil method with the MTF for the thinnest coil (3.3 mm-1) equal to 0.32 (F) and 0.34 (H). The geometric accuracy was better than 0.3%. There was a highly linear (R2>0.999) relationship between measured and expected CT numbers for both the CT number accuracy and linearity sections of the phantom. A cupping effect was clearly seen on the uniform slices and the uniformity-to-noise ratio ranged from 0.52 (F) to 0.89 (H). The air CT number depended on the amount of polycarbonate surrounding the area where it was measured; a difference as high as approximately 200 HU was observed. This hindered the calibration of this scanner in HU. This is likely due to the absence of corrections for beam hardening and scatter in the reconstruction software. However in view of the high linearity of the system, the implementation of these corrections would allow a good quality calibration of the scanner in HU. In conclusion, the eXplore CT 120 achieved a better spatial resolution than the eXplore Ultra (based on previously reported specifications) and future software developments will include beam hardening and scatter corrections that will make the new generation CT scanner even more promising.

  13. Lung imaging in rodents using dual energy micro-CT

    NASA Astrophysics Data System (ADS)

    Badea, C. T.; Guo, X.; Clark, D.; Johnston, S. M.; Marshall, C.; Piantadosi, C.

    2012-03-01

    Dual energy CT imaging is expected to play a major role in the diagnostic arena as it provides material decomposition on an elemental basis. The purpose of this work is to investigate the use of dual energy micro-CT for the estimation of vascular, tissue, and air fractions in rodent lungs using a post-reconstruction three-material decomposition method. We have tested our method using both simulations and experimental work. Using simulations, we have estimated the accuracy limits of the decomposition for realistic micro-CT noise levels. Next, we performed experiments involving ex vivo lung imaging in which intact lungs were carefully removed from the thorax, were injected with an iodine-based contrast agent and inflated with air at different volume levels. Finally, we performed in vivo imaging studies in (n=5) C57BL/6 mice using fast prospective respiratory gating in endinspiration and end-expiration for three different levels of positive end-expiratory pressure (PEEP). Prior to imaging, mice were injected with a liposomal blood pool contrast agent. The mean accuracy values were for Air (95.5%), Blood (96%), and Tissue (92.4%). The absolute accuracy in determining all fraction materials was 94.6%. The minimum difference that we could detect in material fractions was 15%. As expected, an increase in PEEP levels for the living mouse resulted in statistically significant increases in air fractions at end-expiration, but no significant changes in end-inspiration. Our method has applicability in preclinical pulmonary studies where various physiological changes can occur as a result of genetic changes, lung disease, or drug effects.

  14. Capillary optics for micro x-ray fluorescence analysis

    SciTech Connect

    Bjeoumikhov, A.; Langhoff, N.; Bjeoumikhova, S.; Wedell, R.

    2005-06-15

    Practically achieved parameters of capillary optics are presented. A micro x-ray fluorescence (XRF) arrangement was realized by using a microfocus x-ray tube and a capillary optic. Several examples for application of micro XRF are given. It was shown that polycapillary lenses free of the 'halo effect' well suited for micro XRF of heavy elements can be manufactured. Limits of opportunities for micro XRF applications and further development for micro XRF by using capillary optics are analyzed.

  15. Micro-optics for imaging.

    SciTech Connect

    Boye, Robert R.

    2010-09-01

    This project investigates the fundamental imaging capability of an optic with a physical thickness substantially less than 1 mm. The analysis assumes that post-processing can overcome certain restrictions such as detector pixel size and image degradation due to aberrations. A first order optical analysis quickly reveals the limitations of even an ideal thin lens to provide sufficient image resolution and provides the justification for pursuing an annular design. Some straightforward examples clearly show the potential of this approach. The tradeoffs associated with annular designs, specifically field of view limitations and reduced mid-level spatial frequencies, are discussed and their impact on the imaging performance evaluated using several imaging examples. Additionally, issues such as detector acceptance angle and the need to balance aberrations with resolution are included in the analysis. With these restrictions, the final results present an excellent approximation of the expected performance of the lens designs presented.

  16. Computerized methodology for micro-CT and histological data inflation using an IVUS based translation map.

    PubMed

    Athanasiou, Lambros S; Rigas, George A; Sakellarios, Antonis I; Exarchos, Themis P; Siogkas, Panagiotis K; Naka, Katerina K; Panetta, Daniele; Pelosi, Gualtiero; Vozzi, Federico; Michalis, Lampros K; Parodi, Oberdan; Fotiadis, Dimitrios I

    2015-10-01

    A framework for the inflation of micro-CT and histology data using intravascular ultrasound (IVUS) images, is presented. The proposed methodology consists of three steps. In the first step the micro-CT/histological images are manually co-registered with IVUS by experts using fiducial points as landmarks. In the second step the lumen of both the micro-CT/histological images and IVUS images are automatically segmented. Finally, in the third step the micro-CT/histological images are inflated by applying a transformation method on each image. The transformation method is based on the IVUS and micro-CT/histological contour difference. In order to validate the proposed image inflation methodology, plaque areas in the inflated micro-CT and histological images are compared with the ones in the IVUS images. The proposed methodology for inflating micro-CT/histological images increases the sensitivity of plaque area matching between the inflated and the IVUS images (7% and 22% in histological and micro-CT images, respectively). PMID:25771781

  17. First X-ray Fluorescence MicroCT Results from Micrometeorites at SSRL

    SciTech Connect

    Ignatyev, K; Huwig, K; Harvey, R; Ishii, H; Bradley, J; Luening, K; Brennan, S; Pianetta, P

    2006-08-23

    X-ray fluorescence microCT (computed tomography) is a novel technique that allows non-destructive determination of the 3D distribution of chemical elements inside a sample. This is especially important in samples for which sectioning is undesirable either due to the risk of contamination or the requirement for further analysis by different characterization techniques. Developments made by third generation synchrotron facilities and laboratory X-ray focusing systems have made these kinds of measurements more attractive by significantly reducing scan times and beam size. First results from the x-ray fluorescence microCT experiments performed at SSRL beamline 6-2 are reported here. Beamline 6-2 is a 54 pole wiggler that uses a two mirror optical system for focusing the x-rays onto a virtual source slit which is then reimaged with a set of KB mirrors to a (2 x 4) {micro}{sup 2} beam spot. An energy dispersive fluorescence detector is located in plane at 90 degrees to the incident beam to reduce the scattering contribution. A PIN diode located behind the sample simultaneously measures the x-ray attenuation in the sample. Several porous micrometeorite samples were measured and the reconstructed element density distribution including self-absorption correction is presented. Ultimately, this system will be used to analyze particles from the coma of comet Wild-2 and fresh interstellar dust particles both of which were collected during the NASA Stardust mission.

  18. Reduction of ring artefacts in high resolution micro-CT reconstructions.

    PubMed

    Sijbers, Jan; Postnov, Andrei

    2004-07-21

    High resolution micro-CT images are often corrupted by ring artefacts, prohibiting quantitative analysis and hampering post processing. Removing or at least significantly reducing such artefacts is indispensable. However, since micro-CT systems are pushed to the extremes in the quest for the ultimate spatial resolution, ring artefacts can hardly be avoided. Moreover, as opposed to clinical CT systems, conventional correction schemes such as flat-field correction do not lead to satisfactory results. Therefore, in this note a simple but efficient and fast post processing method is proposed that effectively reduces ring artefacts in reconstructed micro-CT images. PMID:15357205

  19. Micro- and nano-CT for the study of bone ultrastructure.

    PubMed

    Peyrin, Françoise; Dong, Pei; Pacureanu, Alexandra; Langer, Max

    2014-12-01

    Micro-computed tomography (micro-CT)-a version of X-ray CT operating at high spatial resolution-has had a considerable success for the investigation of trabecular bone micro-architecture. Currently, there is a lot of interest in exploiting CT techniques at even higher spatial resolutions to assess bone tissue at the cellular scale. After recalling the basic principles of micro-CT, we review the different existing system, based on either standard X-ray tubes or synchrotron sources. Then, we present recent applications of micro- and nano-CT for the analysis of osteocyte lacunae and the lacunar-canalicular network. We also address the question of the quantification of bone ultrastructure to go beyond the sole visualization. PMID:25292366

  20. Visualization and quantitative analysis of lung microstructure using micro CT images

    NASA Astrophysics Data System (ADS)

    Yamamoto, Tetsuo; Kubo, Mitsuru; Kawata, Yoshiki; Niki, Noboru; Matsui, Eisuke; Ohamatsu, Hironobu; Moriyama, Noriyuki

    2004-04-01

    Micro CT system is developed for lung function analysis at a high resolution of the micrometer order (up to 5 μm in spatial resolution). This system reveals the lung distal structures such as interlobular septa, terminal bronchiole, respiratory bronchiole, alveolar duct, and alveolus. In order to visualize lung 3-D microstructures using micro CT images and to analyze them, this research presents a computerized approach. In this approach, the following things are performed: (1) extracting lung distal structures from micro CT images, (2) visualizing extracted lung microstructure in three dimensions, and (3) visualizing inside of lung distal area in three dimensions with fly-through. This approach is applied for to micro CT images of human lung tissue specimens that were obtained by surgical excision and were kept in the state of the inflated fixed lung. And this research succeeded in visualization of lung microstructures using micro CT images to reveal the lung distal structures from bronchiole up to alveolus.

  1. Visualization and quantitative analysis of lung microstructure using micro CT images

    NASA Astrophysics Data System (ADS)

    Yamamoto, Tetsuo; Kubo, Mitsuru; Kawata, Yoshiki; Niki, Noboru; Fujii, Masashi; Nakaya, Yoshihiro; Matsui, Eisuke; Ohmatsu, Hironobu; Moriyama, Noriyuki

    2005-04-01

    Micro CT system is developed for lung function analysis at a high resolution of the micrometer order (up to 5μm in spatial resolution). This system reveals the lung distal structures such as interlobular septa, terminal bronchiole, respiratory bronchiole, alveolar duct, and alveolus. In order to visualize lung 3-D microstructures using micro CT images and to analyze them, this research presents a computerized approach. This approach is applied for to micro CT images of human lung tissue specimens that were obtained by surgical excision and were kept in the state of the inflated fixed lung. This report states a wall area such as bronchus wall and alveolus wall about the extraction technique by using the surface thinning process to analyze the lung microstructures from micro CT images measured by the new-model micro CT system.

  2. Preliminary Experimental Results from a MARS Micro-CT System

    PubMed Central

    He, Peng; Yu, Hengyong; Thayer, Patrick; Jin, Xin; Xu, Qiong; Bennett, James; Tappenden, Rachael; Wei, Biao; Goldstein, Aaron; Renaud, Peter; Butler, Anthony; Butler, Phillip; Wang, Ge

    2013-01-01

    The Medipix All Resolution System (MARS) system is a commercial spectral/multi-energy micro-CT scanner designed and assembled by the MARS Bioimaging, Ltd. in New Zealand. This system utilizes the state-of-the-art Medipix photon-counting, energy-discriminating detector technology developed by a collaboration based at European Organization for Nuclear Research (CERN). In this paper, we report our preliminary experimental results using this system, including geometrical alignment, photon energy characterization, protocol optimization, and spectral image reconstruction. We produced our scan datasets with a multi-material phantom, and then applied ordered subset-simultaneous algebraic reconstruction technique (OS-SART) to reconstruct images in different energy ranges and principal component analysis (PCA) to evaluate spectral deviation between the energy ranges. PMID:22635175

  3. Optical crosstalk in CT detectors and its effects on CT images

    NASA Astrophysics Data System (ADS)

    Youn, Hanbean; Kam, Soohwa; Han, Jong Chul; Kim, Ho Kyung

    2014-03-01

    Detectors for computed tomography (CT) typically consist of scintillator and photodiode arrays which are coupled using optical glue. Therefore, the leakage of optical photons generated in a scintillator block to neighboring pixel photodiodes through the optical glue layer is inevitable. Passivation layers to protect the silicon photodiode as well as the silicon layer itself, which is inactive to the optical photons, are another causes for the leakage. This optical crosstalk reduces image sharpness, and eventually will blur CT images. We have quantitatively investigated the optical crosstalk in CT detectors using the Monte Carlo technique. We performed the optical Monte Carlo simulations for various thicknesses of optical components in a 129 × 129 CT detector array. We obtained the coordinates of optical photons hitting the user-defined detection plane. From the coordinate information, we calculated the collection efficiency at the detection plane and the collection efficiency at the single pixel located just below the scintillator in which the optical photons were generated. Difference between the two quantities provided the optical crosstalk. In addition, using the coordinate information, we calculated point-spread functions as well as modulation-transfer functions from which we estimated the effective aperture due to the optical photon spreading. The optical crosstalk was most severely affected by the thickness of photodiode passivation layer. The effective aperture due to the optical crosstalk was about 110% of the detector pixel aperture for a 0.1 mm-thick passivation layer, and this signal blur was appeared as a relative error of about 3-4% in mismatches between CT images with and without the optical crosstalk. The detailed simulation results are shown and will be very useful for the design of CT detectors.

  4. MicroCT vs. Hg porosimetry: microporosity in commercial stones

    NASA Astrophysics Data System (ADS)

    Fusi, N.; Martinez-Martinez, J.; Barberini, V.; Galimberti, L.

    2009-04-01

    have been cut and scanned by means of a X ray microCT system before and after mercury saturation with Hg porosimeter. The microCT system used is a BIR Actis 130/150 with nominal resolution of 5 micron; for our samples resolution is of 25 microns. Generator and detector are fixed, while the sample rotates; the scanning plane is horizontal. Samples reduce the X rays energy passing through, as a function of its density and atomic number. X rays are then collected on a detector, which converts them into light radiations; a digital camera collects light radiations in raw data and send them to the computer, where they are processed as black/white images. The Hg porosimeter used is a Pascal 140/240 Thermo Fisher. Samples were first degassed and then intruded by Hg. Apparent density, bulk density, porosity and open pore size distribution (pore diameter between 3.7 and 58000 nm) of each sample have been computed using the PASCAL (Pressurization with Automatic Speed-up by Continuous Adjustametnt Logic) method and the Washburn equation; this equation assumes: cylindrical pores, a contact angle between mercury and sample of 140°, a surface tension of mercury vacuum of 0,480 N/m and mercury density equal to 13.5 g/cm³. MicroCT images and porosity data from Hg porosimeter have been compared by several authors both for rocks (Klobes et alii, 1997) and for artificial materials with medical applications (Lin-Gibson et alii, 2007) In samples with no density/composition differences microCT images are homogeneous and gives no information on the internal structure of the sample. This is the case of massive samples (such as BA, BT, GM and TB) and of samples without any significant density differences between clasts and matrix (A and BS) or rock and veins (RC). MicroCT images of the same sample after mercury saturation offer a detailed map of microporosity of the rock, due to the high density contrast between mercury (13.6 g/cm3) and the rock (2.71 g/cm3 for calcite and 2.86 g/cm3 for

  5. Integrated Micro-Optics for Microfluidic Detection.

    PubMed

    Kazama, Yuto; Hibara, Akihide

    2016-01-01

    A method of embedding micro-optics into a microfluidic device was proposed and demonstrated. First, the usefulness of embedded right-angle prisms was demonstrated in microscope observation. Lateral-view microscopic observation of an aqueous dye flow in a 100-μm-sized microchannel was demonstrated. Then, the embedded right-angle prisms were utilized for multi-beam laser spectroscopy. Here, crossed-beam thermal lens detection of a liquid sample was applied to glucose detection. PMID:26753713

  6. Optically controlled hydrodynamic micro-manipulation

    NASA Astrophysics Data System (ADS)

    Phillips, David B.; Debono, Luke; Simpson, Stephen H.; Padgett, Miles J.

    2015-08-01

    The ability to precisely manipulate micro- and nano-scale objects has been a major driver in the progression of nanotechnologies. In this proceedings we describe a form of micro-manipulation in which the position of a target object can be controlled via locally generated fluid flow, created by the motion of nearby optically trapped objects. The ability to do this relies on a simple principle: when an object is moved through a fluid, it displaces the surrounding fluid in a predictable manner, resulting in controllable hydrodynamic forces exerted on adjacent objects. Therefore, by moving optically trapped actuators using feedback in response to a target object's current position, the flow-field at the target can be dynamically controlled. Here we investigate the performance of such a system using stochastic Brownian dynamics simulations, which are based on numerical integration of the Langevin equation describing the evolution of the system, using the Rotne-Praga approximation to capture hydrodynamic interactions. We show that optically controlled hydrodynamic micro-manipulation has the potential to hold target objects in place, move them along prescribed trajectories, and damp their Brownian motion, using the indirect forces of the surrounding water alone.

  7. Coronary artery wall imaging in mice using osmium tetroxide and micro-computed tomography (micro-CT)

    SciTech Connect

    Pai, Vinay M.; Kozlowski, Megan; Donahue, Danielle; Miller, Elishiah; Xiao, Xianghui; Chen, Marcus Y.; Yu, Zu-Xi; Connelly, Patricia; Jeffries, Kenneth; Wen, Han

    2012-05-10

    The high spatial resolution of micro-computed tomography (micro-CT) is ideal for 3D imaging of coronary arteries in intact mouse heart specimens. Previously, micro-CT of mouse heart specimens utilized intravascular contrast agents that hardened within the vessel lumen and allowed a vascular cast to be made. However, for mouse coronary artery disease models, it is highly desirable to image coronary artery walls and highlight plaques. For this purpose, we describe an ex vivo contrast-enhanced micro-CT imaging technique based on tissue staining with osmium tetroxide (OsO{sub 4}) solution. As a tissue-staining contrast agent, OsO{sub 4} is retained in the vessel wall and surrounding tissue during the fixation process and cleared from the vessel lumens. Its high X-ray attenuation makes the artery wall visible in CT. Additionally, since OsO{sub 4} preferentially binds to lipids, it highlights lipid deposition in the artery wall. We performed micro-CT of heart specimens of 5- to 25-week-old C57BL/6 wild-type mice and 5- to 13-week-old apolipoprotein E knockout (apoE{sup -/-}) mice at 10 {mu}m resolution. The results show that walls of coronary arteries as small as 45 {mu}m in diameter are visible using a table-top micro-CT scanner. Similar image clarity was achieved with 1/2000th the scan time using a synchrotron CT scanner. In 13-week-old apoE mice, lipid-rich plaques are visible in the aorta. Our study shows that the combination of OsO{sub 4} and micro-CT permits the visualization of the coronary artery wall in intact mouse hearts.

  8. Advances in optical CT scanning for gel dosimetry

    NASA Astrophysics Data System (ADS)

    Jordan, K.

    2004-01-01

    Optical computed tomography (CT) is physically similar to x-ray CT but is more versatile since many powerful light sources exist and optical elements such as mirrors, lenses, polarizers and efficient detectors are available. There are many potential forms of optical CT. Attenuation, fluorescence or scatter, polarization and refractive index spatial changes are all examples of optical CT. To date, optical CT for gel dosimetry has been limited to attenuation measurements that are the sum of scatter and absorption along defined lines. Polymerization gels turn white with absorbed dose and attenuation is due to scatter. Radiochromic gels also form a dose image due to changes in visible absorption. This short review concentrates on the papers published since the DOSGEL 2001 meeting and highlights experimental results and issues that are important for obtaining good quality input data for reconstruction. The format involves selected highlights from the papers and associated points from our experience with optical CT experimentation. The comments are intended to assist researchers unfamiliar with optical measurements to obtain high quality transmission data, a necessary step in quantitative gel dosimetry.

  9. Multimodal imaging of the human temporal bone: A comparison of CT and optical scanning techniques

    NASA Astrophysics Data System (ADS)

    Voie, Arne H.; Whiting, Bruce; Skinner, Margaret; Neely, J. Gail; Lee, Kenneth; Holden, Tim; Brunsden, Barry

    2003-10-01

    A collaborative effort between Washington University in St. Louis and Spencer Technologies in Seattle, WA has been undertaken to create a multimodal 3D reconstruction of the human cochlea and vestibular system. The goal of this project is to improve the accuracy of in vivo CT reconstructions of implanted cochleae, and to expand the knowledge of high-resolution anatomical detail provided by orthogonal-plane optical sectioning (OPFOS). At WUSL, computed tomography (CT) images of the cochlea are used to determine the position of cochlear implant electrodes relative to target auditory neurons. The cochlear implant position is determined using pre- and post-operative CT scans. The CT volumes are cross-registered to align the semicircular canals and internal auditory canal, which have a unique configuration in 3-D space. The head of a human body donor was scanned with a clinical CT device, after which the temporal bones were removed, fixed in formalin and trimmed prior to scanning with a laboratory Micro CT scanner. Following CT, the temporal bones were sent to the OPFOS Imaging Lab at Spencer Technologies for a further analysis. 3-D reconstructions of CT and OPFOS imaging modalities were compared, and results are presented. [Work supported by NIDCD Grants R44-03623-5 and R01-00581-13.

  10. MicroCT vs. Hg porosimetry: microporosity in commercial stones

    NASA Astrophysics Data System (ADS)

    Fusi, N.; Martinez-Martinez, J.; Barberini, V.; Galimberti, L.

    2009-04-01

    have been cut and scanned by means of a X ray microCT system before and after mercury saturation with Hg porosimeter. The microCT system used is a BIR Actis 130/150 with nominal resolution of 5 micron; for our samples resolution is of 25 microns. Generator and detector are fixed, while the sample rotates; the scanning plane is horizontal. Samples reduce the X rays energy passing through, as a function of its density and atomic number. X rays are then collected on a detector, which converts them into light radiations; a digital camera collects light radiations in raw data and send them to the computer, where they are processed as black/white images. The Hg porosimeter used is a Pascal 140/240 Thermo Fisher. Samples were first degassed and then intruded by Hg. Apparent density, bulk density, porosity and open pore size distribution (pore diameter between 3.7 and 58000 nm) of each sample have been computed using the PASCAL (Pressurization with Automatic Speed-up by Continuous Adjustametnt Logic) method and the Washburn equation; this equation assumes: cylindrical pores, a contact angle between mercury and sample of 140°, a surface tension of mercury vacuum of 0,480 N/m and mercury density equal to 13.5 g/cm³. MicroCT images and porosity data from Hg porosimeter have been compared by several authors both for rocks (Klobes et alii, 1997) and for artificial materials with medical applications (Lin-Gibson et alii, 2007) In samples with no density/composition differences microCT images are homogeneous and gives no information on the internal structure of the sample. This is the case of massive samples (such as BA, BT, GM and TB) and of samples without any significant density differences between clasts and matrix (A and BS) or rock and veins (RC). MicroCT images of the same sample after mercury saturation offer a detailed map of microporosity of the rock, due to the high density contrast between mercury (13.6 g/cm3) and the rock (2.71 g/cm3 for calcite and 2.86 g/cm3 for

  11. Micro-optical instrumentation for process spectroscopy

    NASA Astrophysics Data System (ADS)

    Crocombe, Richard A.; Flanders, Dale C.; Atia, Walid

    2004-12-01

    Traditional laboratory ultraviolet/visible/near-infrared spectroscopy instruments are tabletop-sized pieces of equipment that exhibit very high performance, but are generally too large and costly to be widely distributed for process control applications or used as spectroscopic sensors. Utilizing a unique, and proven, micro-optical technology platform origi-nally developed, qualified and deployed in the telecommunications industry, we have developed a new class of spectro-scopic micro-instrumentation that has laboratory quality resolution and spectral range, with superior speed and robust-ness. The fundamentally lower cost and small form factor of the technology will enable widespread use in process moni-toring and control. This disruption in the ground rules of spectroscopic analysis in these processes is enabled by the re-placement of large optics and detector arrays with a high-finesse, high-speed micro electro mechanical system (MEMS) tunable filter and a single detector, that enable the manufacture of a high performance and extremely rugged spectrome-ter in the footprint of a credit card. Specific process monitoring and control applications discussed in the paper include pharmaceutical, gas sensing and chemical processing applications.

  12. Micro-CT scouting for transmission electron microscopy of human tissue specimens.

    PubMed

    Morales, A G; Stempinski, E S; Xiao, X; Patel, A; Panna, A; Olivier, K N; McShane, P J; Robinson, C; George, A J; Donahue, D R; Chen, P; Wen, H

    2016-07-01

    Transmission electron microscopy (TEM) provides sub-nanometre-scale details in volumetric samples. Samples such as pathology tissue specimens are often stained with a metal element to enhance contrast, which makes them opaque to optical microscopes. As a result, it can be a lengthy procedure to find the region of interest inside a sample through sectioning. We describe micro-CT scouting for TEM that allows noninvasive identification of regions of interest within a block sample to guide the sectioning step. In a tissue pathology study, a bench-top micro-CT scanner with 10 μm resolution was used to determine the location of patches of the mucous membrane in osmium-stained human nasal scraping samples. Once the regions of interest were located, the sample block was sectioned to expose that location, followed by ultra-thin sectioning and TEM to inspect the internal structure of the cilia of the membrane epithelial cells with nanometre resolution. This method substantially reduced the time and labour of the search process from typically 20 sections for light microscopy to three sections with no added sample preparation. PMID:26854176

  13. First X-ray Fluorescence MicroCT Results from Micrometeorites at SSRL

    NASA Astrophysics Data System (ADS)

    Ignatyev, Konstantin; Huwig, Kathy; Harvey, Ralph; Ishii, Hope; Bradley, John; Luening, Katharina; Brennan, Sean; Pianetta, Piero

    2007-01-01

    X-ray fluorescence microCT (computed tomography) is a novel technique that allows non-destructive determination of the 3D distribution of chemical elements inside a sample. This is especially important in samples for which sectioning is undesirable either due to the risk of contamination or the requirement for further analysis by different characterization techniques. Developments made by third generation synchrotron facilities and laboratory X-ray focusing systems have made these kinds of measurements more attractive by significantly reducing scan times and beam size. First results from the x-ray fluorescence microCT experiments performed at SSRL beamline 6-2 are reported here. Beamline 6-2 is a 54 pole wiggler that uses a two mirror optical system for focusing the x-rays onto a virtual source slit which is then reimaged with a set of KB mirrors to a (2 × 4) μm2 beam spot. An energy dispersive fluorescence detector is located in plane at 90 degrees to the incident beam to reduce the scattering contribution. A PIN diode located behind the sample simultaneously measures the x-ray attenuation in the sample. Several porous micrometeorite samples were measured and the reconstructed element density distribution including self-absorption correction is presented. Ultimately, this system will be used to analyze particles from the coma of comet Wild-2 and fresh interstellar dust particles both of which were collected during the NASA Stardust mission.

  14. First X-ray Fluorescence MicroCT Results from Micrometeorites at SSRL

    SciTech Connect

    Ignatyev, Konstantin; Luening, Katharina; Brennan, Sean; Pianetta, Piero; Huwig, Kathy; Harvey, Ralph; Ishii, Hope; Bradley, John

    2007-01-19

    X-ray fluorescence microCT (computed tomography) is a novel technique that allows non-destructive determination of the 3D distribution of chemical elements inside a sample. This is especially important in samples for which sectioning is undesirable either due to the risk of contamination or the requirement for further analysis by different characterization techniques. Developments made by third generation synchrotron facilities and laboratory X-ray focusing systems have made these kinds of measurements more attractive by significantly reducing scan times and beam size. First results from the x-ray fluorescence microCT experiments performed at SSRL beamline 6-2 are reported here. Beamline 6-2 is a 54 pole wiggler that uses a two mirror optical system for focusing the x-rays onto a virtual source slit which is then reimaged with a set of KB mirrors to a (2 x 4) {mu}m2 beam spot. An energy dispersive fluorescence detector is located in plane at 90 degrees to the incident beam to reduce the scattering contribution. A PIN diode located behind the sample simultaneously measures the x-ray attenuation in the sample. Several porous micrometeorite samples were measured and the reconstructed element density distribution including self-absorption correction is presented. Ultimately, this system will be used to analyze particles from the coma of comet Wild-2 and fresh interstellar dust particles both of which were collected during the NASA Stardust mission.

  15. NOTE: Reduction of ring artefacts in high resolution micro-CT reconstructions

    NASA Astrophysics Data System (ADS)

    Sijbers, Jan; Postnov, Andrei

    2004-07-01

    High resolution micro-CT images are often corrupted by ring artefacts, prohibiting quantitative analysis and hampering post processing. Removing or at least significantly reducing such artefacts is indispensable. However, since micro-CT systems are pushed to the extremes in the quest for the ultimate spatial resolution, ring artefacts can hardly be avoided. Moreover, as opposed to clinical CT systems, conventional correction schemes such as flat-field correction do not lead to satisfactory results. Therefore, in this note a simple but efficient and fast post processing method is proposed that effectively reduces ring artefacts in reconstructed mgr-CT images.

  16. Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCT

    NASA Astrophysics Data System (ADS)

    Zhang, Xiaofeng; Badea, Cristian T.; Hood, Greg; Wetzel, Arthur W.; Stiles, Joel R.; Johnson, G. Allan

    2010-02-01

    Image reconstruction is one of the main challenges for fluorescence tomography. For in vivo experiments on small animals, in particular, the inhomogeneous optical properties and irregular surface of the animal make free-space image reconstruction challenging because of the difficulties in accurately modeling the forward problem and the finite dynamic range of the photodetector. These two factors are fundamentally limited by the currently available forward models and photonic technologies. Nonetheless, both limitations can be significantly eased using a signal processing approach. We have recently constructed a free-space panoramic fluorescence diffuse optical tomography system to take advantage of co-registered microCT data acquired from the same animal. In this article, we present a data processing strategy that adaptively selects the optical sampling points in the raw 2-D fluorescent CCD images. Specifically, the general sampling area and sampling density are initially specified to create a set of potential sampling points sufficient to cover the region of interest. Based on 3-D anatomical information from the microCT and the fluorescent CCD images, data points are excluded from the set when they are located in an area where either the forward model is known to be problematic (e.g., large wrinkles on the skin) or where the signal is unreliable (e.g., saturated or low signal-to-noise ratio). Parallel Monte Carlo software was implemented to compute the sensitivity function for image reconstruction. Animal experiments were conducted on a mouse cadaver with an artificial fluorescent inclusion. Compared to our previous results using a finite element method, the newly developed parallel Monte Carlo software and the adaptive sampling strategy produced favorable reconstruction results.

  17. Temporal and spectral imaging with micro-CT

    SciTech Connect

    Johnston, Samuel M.; Johnson, G. Allan; Badea, Cristian T.

    2012-08-15

    Purpose: Micro-CT is widely used for small animal imaging in preclinical studies of cardiopulmonary disease, but further development is needed to improve spatial resolution, temporal resolution, and material contrast. We present a technique for visualizing the changing distribution of iodine in the cardiac cycle with dual source micro-CT. Methods: The approach entails a retrospectively gated dual energy scan with optimized filters and voltages, and a series of computational operations to reconstruct the data. Projection interpolation and five-dimensional bilateral filtration (three spatial dimensions + time + energy) are used to reduce noise and artifacts associated with retrospective gating. We reconstruct separate volumes corresponding to different cardiac phases and apply a linear transformation to decompose these volumes into components representing concentrations of water and iodine. Since the resulting material images are still compromised by noise, we improve their quality in an iterative process that minimizes the discrepancy between the original acquired projections and the projections predicted by the reconstructed volumes. The values in the voxels of each of the reconstructed volumes represent the coefficients of linear combinations of basis functions over time and energy. We have implemented the reconstruction algorithm on a graphics processing unit (GPU) with CUDA. We tested the utility of the technique in simulations and applied the technique in an in vivo scan of a C57BL/6 mouse injected with blood pool contrast agent at a dose of 0.01 ml/g body weight. Postreconstruction, at each cardiac phase in the iodine images, we segmented the left ventricle and computed its volume. Using the maximum and minimum volumes in the left ventricle, we calculated the stroke volume, the ejection fraction, and the cardiac output. Results: Our proposed method produces five-dimensional volumetric images that distinguish different materials at different points in time, and

  18. A dedicated micro-CT beamline for the Australian Synchrotron and the Remote-CT project

    NASA Astrophysics Data System (ADS)

    Mayo, S. C.; Gureyev, T. E.; Nesterets, Y. I.; Thompson, D. A.; Siu, K. K. W.; Wallwork, K.

    2013-10-01

    A dedicated micro-CT beamline is planned for the Australian Synchrotron which will extend the synchrotron's imaging and tomography capability down to the smaller scale, incorporating phase-contrast and absorption-contrast, and an additional focussing-based mode for high-resolution. The beamline will use multi-layer mirror monochromators for enhanced flux, and will focus particularly on dynamic and high throughput studies in both monochromatic and pink-beam mode. Together with the existing Imaging and Medical beamline, this beamline will produce numerous large datasets of 10 GB or more, providing a significant data-processing challenge. The Remote-CT project addresses this by combining the "MASSIVE" supercomputing GPU cluster with XLI / X-TRACT software, developed at CSIRO. This software has extensive functionality for both processing and simulation of absorption and phase-contrast tomography data and has now been modified for parallel operation on a GPU cluster to take maximum advantage of the speed-up this enables.

  19. Compensation of mechanical inaccuracies in micro-CT and nano-CT

    NASA Astrophysics Data System (ADS)

    Sasov, Alexander; Liu, Xuan; Salmon, Phil L.

    2008-08-01

    Micro-CT and especially nano-CT scanning requires very high mechanical precision and stability of object manipulator, which is difficult to reach. Several other problems, such as drift of emission point inside an X-ray source, thermal expansion in different parts of the scanner, mechanical vibrations, and object movement or shrinkage during long scans, can also contribute to geometrical inaccuracies. All these inaccuracies result in artifacts which reduce achievable spatial resolution. Linear distortions can be partially compensated by rigid X/Y shifts in projection images. More complicated object movement and shrinkage will require non-linear transforms. This paper investigates techniques to compensate geometrical inaccuracies by linear transformation only. We have developed two methods to estimate individual X/Y shifts in each measured projection. The first method aligns measured projections with forward-projected projections iteratively to reach an optimal X/Y shift estimation. It is more suitable for mechanical inaccuracies caused by random and jittery movement. The second method uses a very short reference scan acquired immediately after a main scan to obtain estimates of X/Y shifts. This method is rather effective for mechanical inaccuracies caused by slow and coherent mechanical drifts. Both methods have been implemented and evaluated on multiple scanners. Significant improvements in image quality have been observed.

  20. In vivo small animal micro-CT using nanoparticle contrast agents

    PubMed Central

    Ashton, Jeffrey R.; West, Jennifer L.; Badea, Cristian T.

    2015-01-01

    Computed tomography (CT) is one of the most valuable modalities for in vivo imaging because it is fast, high-resolution, cost-effective, and non-invasive. Moreover, CT is heavily used not only in the clinic (for both diagnostics and treatment planning) but also in preclinical research as micro-CT. Although CT is inherently effective for lung and bone imaging, soft tissue imaging requires the use of contrast agents. For small animal micro-CT, nanoparticle contrast agents are used in order to avoid rapid renal clearance. A variety of nanoparticles have been used for micro-CT imaging, but the majority of research has focused on the use of iodine-containing nanoparticles and gold nanoparticles. Both nanoparticle types can act as highly effective blood pool contrast agents or can be targeted using a wide variety of targeting mechanisms. CT imaging can be further enhanced by adding spectral capabilities to separate multiple co-injected nanoparticles in vivo. Spectral CT, using both energy-integrating and energy-resolving detectors, has been used with multiple contrast agents to enable functional and molecular imaging. This review focuses on new developments for in vivo small animal micro-CT using novel nanoparticle probes applied in preclinical research. PMID:26581654

  1. Nonsilicon micro-machined variable optical attenuator

    NASA Astrophysics Data System (ADS)

    Zhou, Hai-lin; Dai, Xu-han; Ding, Gui-fu; Zhao, Xiaolin

    2011-08-01

    Optical power equalization between wavelength-path slots in wavelength division multiplexing (WDM) networks is an increasingly concerning issue in all-optical networks, and this made variable optical attenuators (VOAs) play an increasingly important role in fiber optic transmission systems. Various types of optical attenuators have been realized, but conventional available mechanical VOAs are bulky, costly, and slow. MOEMS technology provides new approaches to improve the characteristic mentioned above. Previous attempts to realize MEMS variable optical attenuators include the use of a micro-driven shutter, a mechanical antireflection switch (MARS) modulator, a micro-machined tilted mirror, and a micro-machined membrane-type waveguide. In this paper, we report the design and fabrication of two types of electromagnetically actuated variable optical attenuator (VOA). They are both driven by a similar construction containing of a plane coil and a FeNi armature. The first one adjusts the attenuation by moving a shutter between the two fibers, the second one by moving one of the fibers directly. The first one is fabricated by nonsilicon surface micromachining technology. In which a copper layer was used as the sacrificial layer, and the electroplated FeNi as the structure layer. This scheme provides another way to fabricate the optical microstructure. According to the experiment results, it has insertion loss less than 3 dB at 1550-nm wavelength, dynamic range greater than 40 dB, 0.2-dB repeatability, and return loss better than 40 dB, driving voltage less than 20 V. For the second one, it included the silicon platform for adjustment of optical coupling between two optical fibers. The main fabrication process of the silicon platform is was the KOH antistrophic wet chemical etching of <100> silicon wafers. The silicon wafer is further selectively etched from the bottom side to subtract the thickness of the silicon elastic platform. In addition, two V grooves were

  2. Serial CT Findings of Paragonimus Infested Dogs and the Micro-CT Findings of the Worm Cysts

    PubMed Central

    Lee, Chang Hyun; Goo, Jin Mo; Lee, Hyun Ju; Hong, Sung-Tae; Shen, Cheng Hua; Chung, Doo Hyun; Son, Kyu Ri; Chang, Jung Min; Eo, Hong

    2007-01-01

    Objective To investigate the serial CT findings of Paragonimus westermani infected dogs and the microscopic structures of the worm cysts using Micro-CT. Materials and Methods This study was approved by the committee on animal research at our institution. Fifteen dogs infected with P. westermani underwent serial contrast-enhanced CT scans at pre-infection, after 10 days of infection, and monthly thereafter until six months for determining the radiologic-pathologic correlation. Three dogs (one dog each time) were sacrificed at 1, 3 and 6 months, respectively. After fixation of the lungs, both multi-detector CT and Micro-CT were performed for examining the worm cysts. Results The initial findings were pleural effusion and/or subpleural ground-glass opacities or linear opacities at day 10. At day 30, subpleural and peribronchial nodules appeared with hydropneumothorax and abdominal or chest wall air bubbles. Cavitary change and bronchial dilatation began to be seen on CT scan at day 30 and this was mostly seen together with mediastinal lymphadenopathy at day 60. Thereafter, subpleural ground-glass opacities and nodules with or without cavitary changes were persistently observed until day 180. After cavitary change of the nodules, the migratory features of the subpleural or peribronchial nodules were seen on all the serial CT scans. Micro-CT showed that the cyst wall contained dilated interconnected tubular structures, which had communications with the cavity and the adjacent distal bronchus. Conclusion The CT findings of paragonimiasis depend on the migratory stage of the worms. The worm cyst can have numerous interconnected tubular channels within its own wall and these channels have connections with the cavity and the adjacent distal bronchus. PMID:17923779

  3. Measurement of endotracheal tube secretions volume by micro computed tomography (MicroCT) scan: an experimental and clinical study

    PubMed Central

    2014-01-01

    Background Biofilm accumulates within the endotracheal tube (ETT) early after intubation. Contaminated secretions in the ETT are associated with increased risk for microbial dissemination in the distal airways and increased resistance to airflow. We evaluated the effectiveness of micro computed tomography (MicroCT) for the quantification of ETT inner volume reduction in critically ill patients. Methods We injected a known amount of gel into unused ETT to simulate secretions. We calculated the volume of gel analyzing MicroCT scans for a length of 20 cm. We then collected eleven ETTs after extubation of critically ill patients, recording clinical and demographical data. We assessed the amount of secretions by MicroCT and obtained ETT microbiological cultures. Results Gel volumes assessed by MicroCT strongly correlated with injected gel volumes (p < 0.001, r2 = 0.999). MicroCT revealed the accumulation of secretions on all the ETTs (median 0.154, IQR:0.02-0.837 mL), corresponding to an average cross-sectional area reduction of 1.7%. The amount of secretions inversely correlated with patients’ age (p = 0.011, rho = −0.727) but not with days of intubation, SAPS2, PaO2/FiO2 assessed on admission. Accumulation of secretions was higher in the cuff region (p = 0.003). Microbial growth occurred in cultures from 9/11 ETTs, and did not correlate with secretions amount. In 7/11 cases the same microbes were identified also in tracheal aspirates. Conclusions MicroCT appears as a feasible and precise technique to measure volume of secretions within ETTs after extubation. In patients, secretions tend to accumulate in the cuff region, with high variability among patients. PMID:24678963

  4. Accurate Resolution Measurement for X-Ray Micro-CT Systems

    NASA Astrophysics Data System (ADS)

    Sharma, K. Sen; Seshadri, S.; Feser, M.; Wang, G.

    2011-09-01

    Accurate measurement of modulation transfer function (MTF), or alternatively point spread function, of an x-ray micro-CT system is essential for various purposes—to determine scanner resolution, to retrieve further information about a scanned object by image-processing, etc. In this paper, a new method for MTF measurement is proposed that can be used with any resolution pattern and is more adept at studying MTF spatial variation than the traditional method of using bar pattern analysis. A resolution target used to determine micro-CT resolution was scanned in a lab-based nano-CT system—the image from the nano-CT gave the `ground truth'. The ground truth was quantitavely compared with the micro-CT projection of same target to determine the point spread function of the system. Results matched well with bar pattern analysis, but the new method was able to study spatial variations while the bar pattern analysis failed.

  5. Volume rendering of the tympanic cavity from micro-CT data.

    PubMed

    Skrzat, Janusz; Kozerska, Magdalena; Wroński, Sebastian; Tarasiu, Jacek; Walocha, Jerzy

    2015-01-01

    The current study presents volumetric reconstruction of the tympanic cavity obtained from micro-CT scans which pixel size was 18 μm. Thanks to this, osseous components of the tympanic cavity were shown in high optical resolution, causing that their morphological appearance was clearly demonstrated. Particular attention was paid on imaging the medial wall of the tympanic cavity, because its structures are of clinical importance. In this respect we showed spatial relationship between the promontory, the oval window, the round window and other minute structures like the pyramidal eminence, subiculum and ponticulus. Hence, application of the microcomputed tomography allowed to visualize abnormal osseous formation located within the tympanic cavity, which potentially could interrupt normal movement of the auditory ossicles. PMID:26867122

  6. Micro-CT of rodents: state-of-the-art and future perspectives

    PubMed Central

    Clark, D. P.; Badea, C. T.

    2014-01-01

    Micron-scale computed tomography (micro-CT) is an essential tool for phenotyping and for elucidating diseases and their therapies. This work is focused on preclinical micro-CT imaging, reviewing relevant principles, technologies, and applications. Commonly, micro-CT provides high-resolution anatomic information, either on its own or in conjunction with lower-resolution functional imaging modalities such as positron emission tomography (PET) and single-photon emission computed tomography (SPECT). More recently, however, advanced applications of micro-CT produce functional information by translating clinical applications to model systems (e.g. measuring cardiac functional metrics) and by pioneering new ones (e.g. measuring tumor vascular permeability with nanoparticle contrast agents). The primary limitations of micro-CT imaging are the associated radiation dose and relatively poor soft tissue contrast. We review several image reconstruction strategies based on iterative, statistical, and gradient sparsity regularization, demonstrating that high image quality is achievable with low radiation dose given ever more powerful computational resources. We also review two contrast mechanisms under intense development. The first is spectral contrast for quantitative material discrimination in combination with passive or actively targeted nanoparticle contrast agents. The second is phase contrast which measures refraction in biological tissues for improved contrast and potentially reduced radiation dose relative to standard absorption imaging. These technological advancements promise to develop micro-CT into a commonplace, functional and even molecular imaging modality. PMID:24974176

  7. Micro computed tomography (CT) scanned anatomical gateway to insect pest bioinformatics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An international collaboration to establish an interactive Digital Video Library for a Systems Biology Approach to study the Asian citrus Psyllid and psyllid genomics/proteomics interactions is demonstrated. Advances in micro-CT, digital computed tomography (CT) scan uses X-rays to make detailed pic...

  8. Micro-optics technology and sensor systems applications

    NASA Technical Reports Server (NTRS)

    Gal, George; Herman, B.; Anderson, W.; Whitney, R.; Morrow, H.

    1993-01-01

    The current generation of electro-optical sensors utilizing refractive and reflective optical elements require sophisticated, complex, and expensive designs. Advanced-technology-based electro-optical sensors of minimum size and weight require miniaturization of optical, electrical, and mechanical devices with an increasing trend toward integration of various components. Micro-optics technology has the potential in a number of areas to simplify optical design with improved performance. This includes internally cooled apertures, hybrid optical design, microlenses, dispersive multicolor microlenses, active dither, electronically controlled optical beam steer, and microscopic integration of micro-optics, detectors, and signal processing layers. This paper describes our approach to the development of micro-optics technology with our main emphasis for sensors applications.

  9. Plant tissue optics: micro- and nanostructures

    NASA Astrophysics Data System (ADS)

    Lee, David W.

    2009-08-01

    Plants have evolved unusual tissue optical properties, not surprising as creatures of light. These are astonishingly sophisticated, involving both micro- and nanostructures. Microstructures refract, scatter, and channel light in plant tissues, to produce concentrations and gradients of light within, and to remove undesired portions of the electromagnetic spectrum. Nanostructures use the different refractive indices of both cellulosic walls and bi-lipid membranes to interfere with light, multiple layers producing intense constructive coloration and reduced fluxes within tissues. In a tropical sedge now under analysis, structures may include silica. Recently discovered surface diffraction gratings produce strong directionally sensitive coloration that assist in pollinator visitation. Although some of these properties have obvious applications, most await appreciation by creative scientists to produce new useful devices.

  10. In-line phase contrast micro-CT reconstruction for biomedical specimens.

    PubMed

    Fu, Jian; Tan, Renbo

    2014-01-01

    X-ray phase contrast micro computed tomography (micro-CT) can non-destructively provide the internal structure information of soft tissues and low atomic number materials. It has become an invaluable analysis tool for biomedical specimens. Here an in-line phase contrast micro-CT reconstruction technique is reported, which consists of a projection extraction method and the conventional filter back-projection (FBP) reconstruction algorithm. The projection extraction is implemented by applying the Fourier transform to the forward projections of in-line phase contrast micro-CT. This work comprises a numerical study of the method and its experimental verification using a biomedical specimen dataset measured at an X-ray tube source micro-CT setup. The numerical and experimental results demonstrate that the presented technique can improve the imaging contrast of biomedical specimens. It will be of interest for a wide range of in-line phase contrast micro-CT applications in medicine and biology. PMID:24211924

  11. Micro-taper as focusing or scattering optical element

    NASA Astrophysics Data System (ADS)

    Degtyarev, S. A.; Ustinov, A. V.; Khonina, S. N.

    2016-04-01

    We consider micro-taper (narrow refractive axicon) as optical element which is focusing or scattering in dependence on axicon's cone angle. The diffraction of laser beam by micro-taper is simulated by two methods: multiply internal ray reflections using geometrical approach and Helmholtz equation solving using finite elements method. Based on ray optics we derive analytic formulas for conical angles values which provide focusing or scattering features of micro-taper. Numerical simulation by finite elements method verifies theoretical results.

  12. Synchrotron radiation CT from the micro to nanoscale for the investigation of bone tissue

    NASA Astrophysics Data System (ADS)

    Peyrin, Francoise; Dong, Pei; Pacureanu, Alexandra; Zuluaga, Maria; Olivier, Cécile; Langer, Max; Cloetens, Peter

    2012-10-01

    During the last decade, X-ray micro Computerized Tomography (CT) has become a conventional technique for the three-dimensional (3D) investigation of trabecular bone micro-architecture. Coupling micro-CT to synchrotron sources possesses significant advantages in terms of image quality and gives access to information on bone mineralization which is an important factor of bone quality. We present an overview of the investigation of bone using Synchrotron Radiation (SR) CT from the micro to the nano scale. We introduce two synchrotron CT systems developed at the ESRF based on SR parallel-beam micro-CT and magnified phase CT respectively, achieving down to submicrometric and nanometric spatial resolution. In the latter, by using phase retrieval prior to tomographic reconstruction, the system provides maps of the 3D refractive index distribution. Parallel-beam SR micro-CT has extensively been used for the analysis of trabecular or cortical bone in human or small animals with spatial resolution in the range [3-10] μm. However, the characterization of the bone properties at the cellular scale is also of major interest. At the micrometric scale, the shape, density and morphology of osteocyte lacunae can be studied on statistically representative volumes. At the nanometric scale, unprecedented 3D displays of the canaliculi network have been obtained on fields of views including a large number of interconnected osteocyte lacunae. Finally SR magnified phase CT provides a detailed analysis of the lacuno-canalicular network and in addition information on the organization of the collagen fibers. These findings open new perspectives for three-dimensional quantitative assessment of bone tissue at the cellular scale.

  13. Quantifying lung morphology with respiratory-gated micro-CT in a murine model of emphysema

    NASA Astrophysics Data System (ADS)

    Ford, N. L.; Martin, E. L.; Lewis, J. F.; Veldhuizen, R. A. W.; Holdsworth, D. W.; Drangova, M.

    2009-04-01

    Non-invasive micro-CT imaging techniques have been developed to investigate lung structure in free-breathing rodents. In this study, we investigate the utility of retrospectively respiratory-gated micro-CT imaging in an emphysema model to determine if anatomical changes could be observed in the image-derived quantitative analysis at two respiratory phases. The emphysema model chosen was a well-characterized, genetically altered model (TIMP-3 knockout mice) that exhibits a homogeneous phenotype. Micro-CT scans of the free-breathing, anaesthetized mice were obtained in 50 s and retrospectively respiratory sorted and reconstructed, providing 3D images representing peak inspiration and end expiration with 0.15 mm isotropic voxel spacing. Anatomical measurements included the volume and CT density of the lungs and the volume of the major airways, along with the diameters of the trachea, left bronchus and right bronchus. From these measurements, functional parameters such as functional residual capacity and tidal volume were calculated. Significant differences between the wild-type and TIMP-3 knockout groups were observed for measurements of CT density over the entire lung, indicating increased air content in the lungs of TIMP-3 knockout mice. These results demonstrate retrospective respiratory-gated micro-CT, providing images at multiple respiratory phases that can be analyzed quantitatively to investigate anatomical changes in murine models of emphysema.

  14. IMRT verification using a radiochromic/optical-CT dosimetry system

    NASA Astrophysics Data System (ADS)

    Oldham, Mark; Guo, Pengyi; Gluckman, Gary; Adamovics, John

    2006-12-01

    This work represents our first experiences relating to IMRT verification using a relatively new 3D dosimetry system consisting of a PRESAGETM dosimeter (Heuris Inc, Pharma LLC) and an optical-CT scanning system (OCTOPUSTM TM MGS Inc). This work builds in a step-wise manner on prior work in our lab.

  15. Imaging protoporphyrin IX fluorescence with a time-domain FMT/microCT system

    NASA Astrophysics Data System (ADS)

    Leblond, Frederic; Kepshire, Dax; O'Hara, Julia A.; Dehghani, Hamid; Srinivasan, Subha; Mincu, N.; Hutchins, M.; Khayat, M.; Pogue, B. W.

    2009-02-01

    Fluorescence molecular tomography (FMT) has the potential to become a powerful quantitative research tool for pre-clinical applications such as evaluating the efficacy of experimental drugs. In this paper, we show how a time-domain FMT/microCT instrument can in principle be used to monitor volumetric fluorescence intensity over time for low fluorophore concentration levels. The experimental results we present relate to Protoporphyrin IX which has a quantum efficiency as much as two orders of magnitude lower compared to more conventional extrinsic dyes used for molecular imaging (e.g., Alexa Fluor dyes, Cyanine dyes). Our results highlight the high sensitivity of the single photon counting technology on which the optical system we have built is based. In conjunction with this system we have developed a diffuse optical fluorescence reconstruction technique that is robust and shown here to perform adequately even in cases when the contribution of noise to the data is important. Related to this, we show that the regularization scheme we have developed is reliable even for low fluorophore concentration values and that no adjustment of the regularization parameter needs to be made for different levels of noise. This generic reconstruction approach insures that images reconstructed from data sets acquired at different times and for different fluorescence levels can be compared on an equal footing.

  16. Integrated visualization of multi-angle bioluminescence imaging and micro CT

    NASA Astrophysics Data System (ADS)

    Kok, P.; Dijkstra, J.; Botha, C. P.; Post, F. H.; Kaijzel, E.; Que, I.; Löwik, C. W. G. M.; Reiber, J. H. C.; Lelieveldt, B. P. F.

    2007-03-01

    This paper explores new methods to visualize and fuse multi-2D bioluminescence imaging (BLI) data with structural imaging modalities such as micro CT and MR. A geometric, back-projection-based 3D reconstruction for superficial lesions from multi-2D BLI data is presented, enabling a coarse estimate of the 3D source envelopes from the multi-2D BLI data. Also, an intuitive 3D landmark selection is developed to enable fast BLI / CT registration. Three modes of fused BLI / CT visualization were developed: slice visualization, carousel visualization and 3D surface visualization. The added value of the fused visualization is demonstrated in three small-animal experiments, where the sensitivity of BLI to detect cell clusters is combined with anatomical detail from micro-CT imaging.

  17. CT guided diffuse optical tomography for breast cancer imaging

    NASA Astrophysics Data System (ADS)

    Baikejiang, Reheman; Zhang, Wei; Zhu, Dianwen; Li, Changqing

    2016-03-01

    Diffuse optical tomography (DOT) has attracted attentions in the last two decades due to its intrinsic sensitivity in imaging chromophores of tissues such as blood, water, and lipid. However, DOT has not been clinically accepted yet due to its low spatial resolution caused by strong optical scattering in tissues. Structural guidance provided by an anatomical imaging modality enhances the DOT imaging substantially. Here, we propose a computed tomography (CT) guided multispectral DOT imaging system for breast cancer detection. To validate its feasibility, we have built a prototype DOT imaging system which consists of a laser at wavelengths of 650 and an electron multiplying charge coupled device (EMCCD) camera. We have validated the CT guided DOT reconstruction algorithms with numerical simulations and phantom experiments, in which different imaging setup parameters, such as projection number of measurements, the width of measurement patch, have been investigated. Our results indicate that an EMCCD camera with air cooling is good enough for the transmission mode DOT imaging. We have also found that measurements at six projections are sufficient for DOT to reconstruct the optical targets with 4 times absorption contrast when the CT guidance is applied. Finally, we report our effort and progress on the integration of the multispectral DOT imaging system into a breast CT scanner.

  18. A comparison of sampling strategies for dual energy micro-CT

    NASA Astrophysics Data System (ADS)

    Guo, Xiaolian; Johnston, Samuel M.; Johnson, G. Allan; Badea, Cristian T.

    2012-03-01

    Micro-CT has become a powerful tool for small animal research. Many micro-CT applications require exogenous contrast agents, which are most commonly based on iodine. Despite advancements in contrast agents, single-energy micro-CT is sometimes limited in the separation of two different materials that share similar grayscale intensity values as in the case of bone and iodine. Dual energy micro-CT offers a solution to this separation problem, while eliminating the need for pre-injection scanning. Various dual energy micro-CT sampling strategies are possible, including 1) single source sequential scanning, 2) simultaneous dual source acquisition, or 3) single source with kVp switching. But, no commercial micro-CT system exists in which all these sampling strategies have been implemented. This study reports on the implementation and comparison of these scanning techniques on the same small animal imaging system. Furthermore, we propose a new sampling strategy that combines dual source and kVp switching. Post-sampling and reconstruction, a simple two-material dual energy decomposition was applied to differentiate iodine from bone. The results indicate the time differences and the potential problems associated with each sampling strategy. Dual source scanning allows for the fastest acquisition, but is prone to errors in decomposition associated with scattering and imperfect geometric alignment of the two imaging chains. KVp switching prevents these types of artifacts, but requires more time for sampling. The novel combination between the dual source and kVp switching has the potential to reduce sampling time and provide better decomposition performance.

  19. Forensic microradiology: micro-computed tomography (Micro-CT) and analysis of patterned injuries inside of bone.

    PubMed

    Thali, Michael J; Taubenreuther, Ulrike; Karolczak, Marek; Braun, Marcel; Brueschweiler, Walter; Kalender, Willi A; Dirnhofer, Richard

    2003-11-01

    When a knife is stabbed in bone, it leaves an impression in the bone. The characteristics (shape, size, etc.) may indicate the type of tool used to produce the patterned injury in bone. Until now it has been impossible in forensic sciences to document such damage precisely and non-destructively. Micro-computed tomography (Micro-CT) offers an opportunity to analyze patterned injuries of tool marks made in bone. Using high-resolution Micro-CT and computer software, detailed analysis of three-dimensional (3D) architecture has recently become feasible and allows microstructural 3D bone information to be collected. With adequate viewing software, data from 2D slice of an arbitrary plane can be extracted from 3D datasets. Using such software as a "digital virtual knife," the examiner can interactively section and analyze the 3D sample. Analysis of the bone injury revealed that Micro-CT provides an opportunity to correlate a bone injury to an injury-causing instrument. Even broken knife tips can be graphically and non-destructively assigned to a suspect weapon. PMID:14640282

  20. A LabVIEW Platform for Preclinical Imaging Using Digital Subtraction Angiography and Micro-CT

    PubMed Central

    Badea, Cristian T.; Hedlund, Laurence W.; Johnson, G. Allan

    2013-01-01

    CT and digital subtraction angiography (DSA) are ubiquitous in the clinic. Their preclinical equivalents are valuable imaging methods for studying disease models and treatment. We have developed a dual source/detector X-ray imaging system that we have used for both micro-CT and DSA studies in rodents. The control of such a complex imaging system requires substantial software development for which we use the graphical language LabVIEW (National Instruments, Austin, TX, USA). This paper focuses on a LabVIEW platform that we have developed to enable anatomical and functional imaging with micro-CT and DSA. Our LabVIEW applications integrate and control all the elements of our system including a dual source/detector X-ray system, a mechanical ventilator, a physiological monitor, and a power microinjector for the vascular delivery of X-ray contrast agents. Various applications allow cardiac- and respiratory-gated acquisitions for both DSA and micro-CT studies. Our results illustrate the application of DSA for cardiopulmonary studies and vascular imaging of the liver and coronary arteries. We also show how DSA can be used for functional imaging of the kidney. Finally, the power of 4D micro-CT imaging using both prospective and retrospective gating is shown for cardiac imaging. PMID:27006920

  1. Dual energy micro CT SkyScan 1173 for the characterization of urinary stone

    NASA Astrophysics Data System (ADS)

    Fitri, L. A.; Asyana, V.; Ridwan, T.; Anwary, F.; Soekersi, H.; Latief, F. D. E.; Haryanto, F.

    2016-03-01

    Knowledge of the composition of urinary stones is an essential part to determine suitable treatments for patients. The aim of this research is to characterize the urinary stones by using dual energy micro CT SkyScan 11173. This technique combines high-energy and low- energy scanning during a single acquisition. Six human urinary stones were scanned in vitro using 80 kV and 120 kV micro CT SkyScan 1173. Projected images were produced by micro CT SkyScan 1173 and then reconstructed using NRecon (in-house software from SkyScan) to obtain a complete 3D image. The urinary stone images were analysed using CT analyser to obtain information of internal structure and Hounsfield Unit (HU) values to determine the information regarding the composition of the urinary stones, respectively. HU values obtained from some regions of interest in the same slice are compared to a reference HU. The analysis shows information of the composition of the six scanned stones obtained. The six stones consist of stone number 1 (calcium+cystine), number 2 (calcium+struvite), number 3 (calcium+cystine+struvite), number 4 (calcium), number 5 (calcium+cystine+struvite), and number 6 (calcium+uric acid). This shows that dual energy micro CT SkyScan 1173 was able to characterize the composition of the urinary stone.

  2. Performance of an untethered micro-optical pressure sensor

    NASA Astrophysics Data System (ADS)

    Ioppolo, Tindaro; Manzo, Maurizio; Krueger, Paul

    2012-11-01

    We present analytical and computational studies of the performance of a novel untethered micro-optical pressure sensor for fluid dynamics measurements. In particular, resolution and dynamic range will be presented. The sensor concept is based on the whispering galley mode (WGM) shifts that are observed in micro-scale dielectric optical cavities. A micro-spherical optical cavity (liquid or solid) is embedded in a thin polymeric sheet. The applied external pressure perturbs the morphology of the optical cavity leading to a shift in its optical resonances. The optical sensors are interrogated remotely, by embedding quantum dots or fluorescent dye in the micro-optical cavity. This allows a free space coupling of excitation and monitoring of the optical modes without the need of optical fibers or other cabling. With appropriate excitation and monitoring equipment, the micro-scale sensors can be distributed over a surface (e.g., including flexible biological surfaces) to monitor the local pressure field. We acknowledge the financial support from the National Science Foundation through grant CBET-1133876 with Dr. Horst Henning Winter as the program director.

  3. Development of a Carbon Nanotube-Based Micro-CT and its Applications in Preclinical Research

    NASA Astrophysics Data System (ADS)

    Burk, Laurel May

    Due to the dependence of researchers on mouse models for the study of human disease, diagnostic tools available in the clinic must be modified for use on these much smaller subjects. In addition to high spatial resolution, cardiac and lung imaging of mice presents extreme temporal challenges, and physiological gating methods must be developed in order to image these organs without motion blur. Commercially available micro-CT imaging devices are equipped with conventional thermionic x-ray sources and have a limited temporal response and are not ideal for in vivo small animal studies. Recent development of a field-emission x-ray source with carbon nanotube (CNT) cathode in our lab presented the opportunity to create a micro-CT device well-suited for in vivo lung and cardiac imaging of murine models for human disease. The goal of this thesis work was to present such a device, to develop and refine protocols which allow high resolution in vivo imaging of free-breathing mice, and to demonstrate the use of this new imaging tool for the study many different disease models. In Chapter 1, I provide background information about x-rays, CT imaging, and small animal micro-CT. In Chapter 2, CNT-based x-ray sources are explained, and details of a micro-focus x-ray tube specialized for micro-CT imaging are presented. In Chapter 3, the first and second generation CNT micro-CT devices are characterized, and successful respiratory- and cardiac-gated live animal imaging on normal, wild-type mice is achieved. In Chapter 4, respiratory-gated imaging of mouse disease models is demonstrated, limitations to the method are discussed, and a new contactless respiration sensor is presented which addresses many of these limitations. In Chapter 5, cardiac-gated imaging of disease models is demonstrated, including studies of aortic calcification, left ventricular hypertrophy, and myocardial infarction. In Chapter 6, several methods for image and system improvement are explored, and radiation

  4. Implementation and assessment of an animal management system for small-animal micro-CT / micro-SPECT imaging

    NASA Astrophysics Data System (ADS)

    Holdsworth, David W.; Detombe, Sarah A.; Chiodo, Chris; Fricke, Stanley T.; Drangova, Maria

    2011-03-01

    Advances in laboratory imaging systems for CT, SPECT, MRI, and PET facilitate routine micro-imaging during pre-clinical investigations. Challenges still arise when dealing with immune-compromised animals, biohazardous agents, and multi-modality imaging. These challenges can be overcome with an appropriate animal management system (AMS), with the capability for supporting and monitoring a rat or mouse during micro-imaging. We report the implementation and assessment of a new AMS system for mice (PRA-3000 / AHS-2750, ASI Instruments, Warren MI), designed to be compatible with a commercial micro-CT / micro-SPECT imaging system (eXplore speCZT, GE Healthcare, London ON). The AMS was assessed under the following criteria: 1) compatibility with the imaging system (i.e. artifact generation, geometric dimensions); 2) compatibility with live animals (i.e. positioning, temperature regulation, anesthetic supply); 3) monitoring capabilities (i.e. rectal temperature, respiratory and cardiac monitoring); 4) stability of co-registration; and 5) containment. Micro-CT scans performed using a standardized live-animal protocol (90 kVp, 40 mA, 900 views, 16 ms per view) exhibited low noise (+/-19 HU) and acceptable artifact from high-density components within the AMS (e.g. ECG pad contacts). Live mice were imaged repeatedly (with removal and replacement of the AMS) and spatial registration was found to be stable to within +/-0.07 mm. All animals tolerated enclosure within the AMS for extended periods (i.e. > one hour) without distress, based on continuous recordings of rectal temperature, ECG waveform and respiratory rate. A sealed AMS system extends the capability of a conventional micro-imaging system to include immune-compromised and biosafety level 2 mouse-imaging protocols.

  5. Optical-CT gel-dosimetry I: basic investigations.

    PubMed

    Oldham, Mark; Siewerdsen, Jeffrey H; Kumar, Sai; Wong, John; Jaffray, David A

    2003-04-01

    Comprehensive verification of the intricate dose distributions associated with advanced radiation treatments is now an immediate and substantial problem. The task is challenging using traditional dosimeters because of restrictions to point measurements (ion chambers, diodes, TLD, etc.) or planar measurements (film). In essence, rapid advances in the technology to deliver radiation treatments have not been paralleled by corresponding advances in the ability to verify these treatments. A potential solution has emerged in the form of water equivalent three dimensional (3D) gel-dosimetry. In this paper we present basic characterization and performance studies of a prototype optical-CT scanning system developed in our laboratory. An analysis of the potential role or scope of gel dosimetry, in relation to other dosimeters, and to verification across the spectrum of therapeutic techniques is also given. The characterization studies enabled the determination of nominal operating conditions for optical-CT scanning. "Finger" phantoms are introduced as a powerful and flexible tool for the investigation of optical-CT performance. The modulation-transfer function (MTF) of the system is determined to be better than 10% out to 1 mm(-1), confirming sub-mm imaging ability. System performance is demonstrated by the acquisition of a 1 x 1 x 1 mm3 dataset through the dose distribution delivered by an x-ray lens that focuses x rays in the energy range 40-80 KeV. This 3D measurement would be extremely difficult to achieve with other dosimetry techniques and highlights some of the strengths of gel dosimetry. Finally, an optical Monte Carlo model is introduced and shown to have potential to model light transport through gel-dosimetry systems, and to provide a tool for the study and optimization of optical-CT gel dosimetry. The model utilizes Mie scattering theory and requires knowledge of the variation of the particle size distribution with dose. The latter was determined here using the

  6. Energy-Discriminative Performance of a Spectral Micro-CT System

    PubMed Central

    He, Peng; Yu, Hengyong; Bennett, James; Ronaldson, Paul; Zainon, Rafidah; Butler, Anthony; Butler, Phil; Wei, Biao; Wang, Ge

    2013-01-01

    Experiments were performed to evaluate the energy-discriminative performance of a spectral (multi-energy) micro-CT system. The system, designed by MARS (Medipix All Resolution System) Bio-Imaging Ltd. (Christchurch, New Zealand), employs a photon-counting energy-discriminative detector technology developed by CERN (European Organization for Nuclear Research). We used the K-edge attenuation characteristic of some known materials to calibrate the detector’s photon energy discrimination. For tomographic analysis, we used the compressed sensing (CS) based ordered-subset simultaneous algebraic reconstruction techniques (OS-SART) to reconstruct sample images, which is effective to reduce noise and suppress artifacts. Unlike conventional CT, the principal component analysis (PCA) method can be applied to extract and quantify additional attenuation information from a spectral CT dataset. Our results show that the spectral CT has a good energy-discriminative performance and provides more attenuation information than the conventional CT. PMID:24004864

  7. Dosimetry concepts for scanner quality assurance and tissue dose assessment in micro-CT

    SciTech Connect

    Hupfer, Martin; Kolditz, Daniel; Nowak, Tristan; Eisa, Fabian; Brauweiler, Robert; Kalender, Willi A.

    2012-02-15

    Purpose: At present, no established methods exist for dosimetry in micro computed tomography (micro-CT). The purpose of this study was therefore to investigate practical concepts for both dosimetric scanner quality assurance and tissue dose assessment for micro-CT. Methods: The computed tomography dose index (CTDI) was adapted to micro-CT and measurements of the CTDI both free in air and in the center of cylindrical polymethyl methacrylate (PMMA) phantoms of 20 and 32 mm diameter were performed in a 6 month interval with a 100 mm pencil ionization chamber calibrated for low tube voltages. For tissue dose assessment, z-profile measurements using thermoluminescence dosimeters (TLDs) were performed and both profile and CTDI measurements were compared to Monte Carlo (MC) dose calculations to validate an existing MC tool for use in micro-CT. The consistency of MC calculations and TLD measurements was further investigated in two mice cadavers. Results: CTDI was found to be a reproducible quantity for constancy tests on the micro-CT system under study, showing a linear dependence on tube voltage and being by definition proportional to mAs setting and z-collimation. The CTDI measured free in air showed larger systematic deviations after the 6 month interval compared to the CTDI measured in PMMA phantoms. MC calculations were found to match CTDI measurements within 3% when using x-ray spectra measured at our micro-CT installation and better than 10% when using x-ray spectra calculated from semi-empirical models. Visual inspection revealed good agreement for all z-profiles. The consistency of MC calculations and TLD measurements in mice was found to be better than 10% with a mean deviation of 4.5%. Conclusions: Our results show the CTDI implemented for micro-CT to be a promising candidate for dosimetric quality assurance measurements as it linearly reflects changes in tube voltage, mAs setting, and collimation used during the scan, encouraging further studies on a variety of

  8. Micro-CT Evaluation of Root Filling Removal after Three Stages of Retreatment Procedure.

    PubMed

    Rosa, Ricardo Abreu da; Santini, Manuela Favarin; Cavenago, Bruno Cavalini; Pereira, Jefferson Ricardo; Duarte, Marco Antônio Húngaro; Só, Marcus Vinícius Reis

    2015-12-01

    The aim of this study was to quantify the residual filling material after filling removal, re-preparation with rotary or reciprocating files and passive ultrasonic irrigation (PUI). Twenty maxillary molars were prepared using ProTaper instruments up to F1. The teeth were filled with AH Plus and ProTaper gutta-percha points using the single-cone technique. Thereafter, the specimens were scanned using a micro-computed tomography system (Micro-CT #1). Then, the root canal filling was removed using ProTaper Retreatment files, and a new scan was performed (Micro-CT #2). The specimens were divided into two groups according to the instrument used for re-preparation: ProTaper rotary or WaveOne reciprocating files (Micro-CT #3). Finally, PUI was performed, and a new micro-CT scan was performed (Micro-CT #4). Intragroup and intergroup analyses were performed using Friedman and Dunn's post hoc test and the Kruskal-Wallis and Dunn post hoc tests, respectively. Palatal canal presented the highest volume of residual filling material in all stages of endodontic retreatment (p<0.05). The main reduction of filling volume was achieved after using ProTaper Retreament (p<0.05). The amount of remaining filling material after using ProTaper Retreatment was similar to that achieved with rotary and reciprocating files and after PUI (p>0.05). Rotary and reciprocating files achieved similar removal of the root canal filling (p>0.05). The greatest reduction in filling material was achieved after using ProTaper Retreatment files. Rotary and reciprocating instruments and PUI did not improve the removal of root canal filling materials. PMID:26963205

  9. Direct micro-CT observation confirms the induction of embolism upon xylem cutting under tension

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We used two different Synchrotron-based micro-CT facilities (SLS: Swiss Light Source, Villigen, Switzerland, and ALS: Advanced Light Source, Berkeley, CA USA) to test the excision artifact described by Wheeler et al. (2013). Specifically, we examined the impact of cutting xylem under tension and und...

  10. Investigation of pathogen infiltration into produce using Xradia Bio MicroCT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The internalization of human pathogens into plant tissues has received significant attention. Human pathogens can infiltrate plant tissue through stomata, cut edges, wounds on produce, or the plant vascular system. The nondestructive X-ray computed microtomography (MicroCT) technique is an X-ra...

  11. Reconstruction and exploration of virtual middle-ear models derived from micro-CT datasets

    PubMed Central

    Lee, Dong H.; Chan, Sonny; Salisbury, Curt; Kim, Namkeun; Salisbury, Kenneth; Puria, Sunil; Blevins, Nikolas H.

    2014-01-01

    Background Middle-ear anatomy is integrally linked to both its normal function and its response to disease processes. Micro-CT imaging provides an opportunity to capture high-resolution anatomical data in a relatively quick and non-destructive manner. However, to optimally extract functionally relevant details, an intuitive means of reconstructing and interacting with these data is needed. Materials and methods A micro-CT scanner was used to obtain high-resolution scans of freshly explanted human temporal bones. An advanced volume renderer was adapted to enable real-time reconstruction, display, and manipulation of these volumetric datasets. A custom-designed user interface provided for semi-automated threshold segmentation. A 6-degrees-of-freedom navigation device was designed and fabricated to enable exploration of the 3D space in a manner intuitive to those comfortable with the use of a surgical microscope. Standard haptic devices were also incorporated to assist in navigation and exploration. Results Our visualization workstation could be adapted to allow for the effective exploration of middle-ear micro-CT datasets. Functionally significant anatomical details could be recognized and objective data could be extracted. Conclusions We have developed an intuitive, rapid, and effective means of exploring otological micro-CT datasets. This system may provide a foundation for additional work based on middle-ear anatomical data. PMID:20100558

  12. Method for correction of rotation errors in Micro-CT System

    NASA Astrophysics Data System (ADS)

    Zhao, Jintao; Hu, Xiaodong; Zou, Jing; Zhao, Gengyan; Lv, Hanyu; Xu, Linyan; Xu, Ying; Hu, Xiaotang

    2016-04-01

    In Micro-CT (Computed Tomography) system, a series of projection data of sample are collected by the detector as the precision stage rotates step by step. However, the accuracy of projection images is limited by rotation errors during the acquisition process. Therefore, evaluating the performance of precision rotary stage and developing corresponding compensation method are necessary in Micro-CT system. In this paper, a metered system is designed which is composed of four precision capacitive sensors, a precision machined steel cylinder and four flexible hinges. Based on the metered system, a method to calibrate and correct the errors when the precision stage turns is proposed. Firstly, the theoretical analysis is proposed and the imperfect situations are considered. And then, the method has been applied to correct experimental data taken from a microscope type of Micro-CT system. Successful results are shown through evaluating MTF (Modulation Transfer Function) of Micro-CT system. Lastly, a sample of tungsten wire is scanned and the reconstructed images are compared before and after using the calibrated method.

  13. Robust optic nerve segmentation on clinically acquired CT

    NASA Astrophysics Data System (ADS)

    Panda, Swetasudha; Asman, Andrew J.; DeLisi, Michael P.; Mawn, Louise A.; Galloway, Robert L.; Landman, Bennett A.

    2014-03-01

    The optic nerve is a sensitive central nervous system structure, which plays a critical role in many devastating pathological conditions. Several methods have been proposed in recent years to segment the optic nerve automatically, but progress toward full automation has been limited. Multi-atlas methods have been successful for brain segmentation, but their application to smaller anatomies remains relatively unexplored. Herein we evaluate a framework for robust and fully automated segmentation of the optic nerves, eye globes and muscles. We employ a robust registration procedure for accurate registrations, variable voxel resolution and image fieldof- view. We demonstrate the efficacy of an optimal combination of SyN registration and a recently proposed label fusion algorithm (Non-local Spatial STAPLE) that accounts for small-scale errors in registration correspondence. On a dataset containing 30 highly varying computed tomography (CT) images of the human brain, the optimal registration and label fusion pipeline resulted in a median Dice similarity coefficient of 0.77, symmetric mean surface distance error of 0.55 mm, symmetric Hausdorff distance error of 3.33 mm for the optic nerves. Simultaneously, we demonstrate the robustness of the optimal algorithm by segmenting the optic nerve structure in 316 CT scans obtained from 182 subjects from a thyroid eye disease (TED) patient population.

  14. Experimental validation of a rapid Monte Carlo based micro-CT simulator.

    PubMed

    Colijn, A P; Zbijewski, W; Sasov, A; Beekman, F J

    2004-09-21

    We describe a newly developed, accelerated Monte Carlo simulator of a small animal micro-CT scanner. Transmission measurements using aluminium slabs are employed to estimate the spectrum of the x-ray source. The simulator incorporating this spectrum is validated with micro-CT scans of physical water phantoms of various diameters, some containing stainless steel and Teflon rods. Good agreement is found between simulated and real data: normalized error of simulated projections, as compared to the real ones, is typically smaller than 0.05. Also the reconstructions obtained from simulated and real data are found to be similar. Thereafter, effects of scatter are studied using a voxelized software phantom representing a rat body. It is shown that the scatter fraction can reach tens of per cents in specific areas of the body and therefore scatter can significantly affect quantitative accuracy in small animal CT imaging. PMID:15509068

  15. 4D micro-CT for cardiac and perfusion applications with view under sampling

    NASA Astrophysics Data System (ADS)

    Badea, Cristian T.; Johnston, Samuel M.; Qi, Yi; Johnson, G. Allan

    2011-06-01

    Micro-CT is commonly used in preclinical studies to provide anatomical information. There is growing interest in obtaining functional measurements from 4D micro-CT. We report here strategies for 4D micro-CT with a focus on two applications: (i) cardiac imaging based on retrospective gating and (ii) pulmonary perfusion using multiple contrast injections/rotations paradigm. A dual source micro-CT system is used for image acquisition with a sampling rate of 20 projections per second. The cardiac micro-CT protocol involves the use of a liposomal blood pool contrast agent. Fast scanning of free breathing mice is achieved using retrospective gating. The ECG and respiratory signals are used to sort projections into ten cardiac phases. The pulmonary perfusion protocol uses a conventional contrast agent (Isovue 370) delivered by a micro-injector in four injections separated by 2 min intervals to allow for clearance. Each injection is synchronized with the rotation of the animal, and each of the four rotations is started with an angular offset of 22.5 from the starting angle of the previous rotation. Both cardiac and perfusion protocols result in an irregular angular distribution of projections that causes significant streaking artifacts in reconstructions when using traditional filtered backprojection (FBP) algorithms. The reconstruction involves the use of the point spread function of the micro-CT system for each time point, and the analysis of the distribution of the reconstructed data in the Fourier domain. This enables us to correct for angular inconsistencies via deconvolution and identify regions where data is missing. The missing regions are filled with data from a high quality but temporally averaged prior image reconstructed with all available projections. Simulations indicate that deconvolution successfully removes the streaking artifacts while preserving temporal information. 4D cardiac micro-CT in a mouse was performed with adequate image quality at isotropic

  16. MicroPET/CT Colonoscopy in long-lived Min mouse using NM404

    NASA Astrophysics Data System (ADS)

    Christensen, Matthew B.; Halberg, Richard B.; Schutten, Melissa M.; Weichert, Jamey P.

    2009-02-01

    Colon cancer is a leading cause of death in the US, even though many cases are preventable if tumors are detected early. One technique to promote screening is Computed Tomography Colonography (CTC). NM404 is a second generation phospholipid ether analogue which has demonstrated selective uptake and prolonged retention in 43/43 types of malignant tumors but not inflammatory sites or premalignant lesions. The purpose of this experiment was to evaluate (SWR x B6 )F1.Min mice as a preclinical model to test MicroPET/CT dual modality virtual colonoscopy. Each animal was given an IV injection of 124I-NM404 (100 uCi) 24, 48 and 96 hours prior to scanning on a dedicated microPET/CT system. Forty million counts were histogrammed in 3D and reconstructed using an OSEM 2D algorithm. Immediately after PET acquisition, a 93 m volumetric CT was acquired at 80 kVp, 800 uA and 350 ms exposures. Following CT, the mouse was sacrificed. The entire intestinal tract was excised, washed, insufflated, and scanned ex vivo A total of eight tissue samples from the small intestine were harvested: 5 were benign adenomas, 2 were malignant adenocarcinomas, and 1 was a Peyer's patch (lymph tissue) . The sites of these samples were positioned on CT and PET images based on morphological cues and the distance from the anus. Only 1/8 samples showed tracer uptake. several hot spots in the microPET image were not chosen for histology. (SWR x B6)F1.Min mice develop benign and malignant tumors, making this animal model a strong candidate for future dual modality microPET/CT virtual colonography studies.

  17. Enhanced X-ray absorption for micro-CT analysis of low density polymers.

    PubMed

    Crica, Livia Elena; Wengenroth, Jonas; Tiainen, Hanna; Ionita, Mariana; Haugen, Håvard Jostein

    2016-06-01

    X-ray microtomography (micro-CT), one of the most resourceful instruments for high resolution 3D analysis, can provide qualitative and quantitative accurate structural and compositional information for a broad range of materials. Yet its contribution to the field of biopolymeric materials science is often limited by low imaging contrast due to scarce X-ray attenuation features, particularly for sponges and foam-like structures. This limitation can be overcome to some extent by adjusting the working parameters of micro-CT equipment. However, such approach also facilitates noise and artefacts, and solving the signal-to-noise trade-off has been always problematic. Searching for alternatives turns one's attention towards the improvement of X-ray attenuation features. While several studies report the use of contrast agents for biological materials, studies to integrate multiple micro-CT approaches for biopolymers were not conducted so far. This method paper is thus aimed to serve as a platform for micro-CT analysis of low X-ray absorptive polymers. Here, several contrast enhancing artifices were developed and trialled on gelatin and poly(vinyl alcohol) biopolymer composites (GP). Accordingly, GP were modified with iodine, barium, silver-based chemicals and hexa(methyl disilazane) by two different methods, i.e. addition of high atomic number chemicals during materials synthesis and post-synthesis staining, respectively. Consequently, cross-sectional scanning electron microscopy emerged as complementary characterization, aimed to confirm the reproducibility of samples morphological features. The most versatile methods were barium chloride additive incorporation and iodine staining coupled with hexa(methyl disilazane) chemical drying. Both methods significantly improved the X-ray absorbance of our polymeric samples, providing better contrast of micro-CT tomograms. PMID:26863157

  18. Processing of microCT implant-bone systems images using Fuzzy Mathematical Morphology

    NASA Astrophysics Data System (ADS)

    Bouchet, A.; Colabella, L.; Omar, S.; Ballarre, J.; Pastore, J.

    2016-04-01

    The relationship between a metallic implant and the existing bone in a surgical permanent prosthesis is of great importance since the fixation and osseointegration of the system leads to the failure or success of the surgery. Micro Computed Tomography is a technique that helps to visualize the structure of the bone. In this study, the microCT is used to analyze implant-bone systems images. However, one of the problems presented in the reconstruction of these images is the effect of the iron based implants, with a halo or fluorescence scattering distorting the micro CT image and leading to bad 3D reconstructions. In this work we introduce an automatic method for eliminate the effect of AISI 316L iron materials in the implant-bone system based on the application of Compensatory Fuzzy Mathematical Morphology for future investigate about the structural and mechanical properties of bone and cancellous materials.

  19. Micro-CT of Carotid Arteries: A Tool for Experimental Studies

    SciTech Connect

    Mohr, Andreas; Wenke, Ruediger; Roemer, Frank W.; Lynch, John A.; Gatzka, Christian; Priebe, Markus; Guermazi, Ali; Grigorian, Mikayel; Heller, Martin; Mueller-Huelsbeck, Stefan

    2004-11-15

    Micro-computed tomography (micro-CT) is a high-resolution, nondestructive tool for two- and three-dimensional imaging and quantification. The ability of this technique to assess atherosclerosis of the carotid artery was evaluated in three human cadaver samples based on the original axial acquisitions, multiplanar reconstructions and volume rendering techniques. Quantitative analysis included the calculation of: (1) the original lumen perimeter, original lumen area, plaque area, residual lumen area, calcified area and gross sectional area reduction of the vascular lumen from two-dimensional slices; (2) the total tissue volume, soft tissue volume and calcified tissue volume from the three-dimensional data set. This preliminary study demonstrates the potential of micro-CT as a supplementary method for the two- and three-dimensional ex vivo evaluation of carotid atherosclerosis.

  20. MEMS: A new approach to micro-optics

    SciTech Connect

    Sniegowski, J.J.

    1997-12-31

    MicroElectroMechanical Systems (MEMS) and their fabrication technologies provide great opportunities for application to micro-optical systems (MOEMS). Implementing MOEMS technology ranges from simple, passive components to complicated, active systems. Here, an overview of polysilicon surface micromachining MEMS combined with optics is presented. Recent advancements to the technology, which may enhance its appeal for micro-optics applications are emphasized. Of all the MEMS fabrication technologies, polysilicon surface micromachining technology has the greatest basis in and leverages the most the infrastructure for silicon integrated circuit fabrication. In that respect, it provides the potential for very large volume, inexpensive production of MOEMS. This paper highlights polysilicon surface micromachining technology in regards to its capability to provide both passive and active mechanical elements with quality optical elements.

  1. Practical use of the modified Bronnikov algorithm in micro-CT

    NASA Astrophysics Data System (ADS)

    Boone, M.; De Witte, Y.; Dierick, M.; Van den Bulcke, J.; Vlassenbroeck, J.; Van Hoorebeke, L.

    2009-04-01

    Through the years, the resolution of X-ray Computed Tomography (CT) systems has increased rapidly, in particular for the newer micro- and nano-CT systems. With this increasing resolution, the limits of absorption contrast CT are being reached. At the same time, a new type of contrast becomes visible: phase contrast. Mainly for low-absorbing objects such as insects and wood, phase contrast can lead to a new type of CT reconstruction using the modified Bronnikov algorithm (MBA) [A. Groso, R. Abela, M. Stampanoni, Implementation of a fast method for high 297 resolution phase contrast tomography, Opt. Express 14 (18) (2006) 8103.] Despite it's theoretical limitation to pure phase objects, the algorithm has some clear advantages with respect to filtered back-projection (FBP). The MBA is therefore commonly used at the Centre for X-ray Tomography of the Ghent University (UGCT) to obtain additional information for optimal scanning results.

  2. Identification of New Lithic Clasts in Lunar Breccia 14305 by Micro-CT and Micro-XRF Analysis

    NASA Technical Reports Server (NTRS)

    Zeigler, Ryan A.; Carpenter, Paul K.; Jolliff, Bradley L.

    2014-01-01

    From 1969 to 1972, Apollo astronauts collected 382 kg of rocks, soils, and core samples from six locations on the surface of the Moon. The samples were initially characterized, largely by binocular examination, in a custom-built facility at Johnson Space Center (JSC), and the samples have been curated at JSC ever since. Despite over 40 years of study, demand for samples remains high (500 subsamples per year are allocated to scientists around the world), particularly for plutonic (e.g., anorthosites, norites, etc.) and evolved (e.g., granites, KREEP basalts) lithologies. The reason for the prolonged interest is that as new scientists and new techniques examine the samples, our understanding of how the Moon, Earth, and other inner Solar System bodies formed and evolved continues to grow. Scientists continually clamor for new samples to test their emerging hypotheses. Although all of the large Apollo samples that are igneous rocks have been classified, many Apollo samples are complex polymict breccias that have previously yielded large (cm-sized) igneous clasts. In this work we present the initial efforts to use the non-destructive techniques of micro-computed tomography (micro-CT) and micro x-ray fluorescence (micro-XRF) to identify large lithic clasts in Apollo 14 polymict breccia sample 14305. The sample in this study is 14305,483, a 150 g slab of regolith breccia 14305 measuring 10x6x2 cm (Figure 1a). The sample was scanned at the University of Texas High-Resolution X-ray CT Facility on an Xradia MicroXCT scanner. Two adjacent overlapping volumes were acquired at 49.2 micrometer resolution and stitched together, resulting in 1766 slices. Each volume was acquired at 100 kV accelerating voltage and 98 mA beam current with a 1 mm CaF2 filter, with 2161 views gathered over 360deg at 3 seconds acquisition time per view. Micro-XRF analyses were done at Washington University in St. Louis, Missouri on an EDAX Orbis PC micro-XRF instrument. Multiple scans were made at 40 k

  3. MicroCT and microMRI imaging of a prenatal mouse model of increased brain size

    NASA Astrophysics Data System (ADS)

    López, Elisabeth K. N.; Stock, Stuart R.; Taketo, Makoto M.; Chenn, Anjen; Ravosa, Matthew J.

    2008-08-01

    There are surprisingly few experimental models of neural growth and cranial integration. This and the dearth of information regarding fetal brain development detract from a mechanistic understanding of cranial integration and its relevance to the patterning of skull form, specifically the role of encephalization on basicranial flexion. To address this shortcoming, our research uses transgenic mice expressing a stabilized form of β-catenin to isolate the effects of relative brain size on craniofacial development. These mice develop highly enlarged brains due to an increase in neural precursors, and differences between transgenic and wild-type mice are predicted to result solely from variation in brain size. Comparisons of wild-type and transgenic mice at several prenatal ages were performed using microCT (Scanco Medical MicroCT 40) and microMRI (Avance 600 WB MR spectrometer). Statistical analyses show that the larger brain of the transgenic mice is associated with a larger neurocranium and an altered basicranial morphology. However, body size and postcranial ossification do not seem to be affected by the transgene. Comparisons of the rate of postcranial and cranial ossification using microCT also point to an unexpected effect of neural growth on skull development: increased fetal encephalization may result in a compensatory decrease in the level of cranial ossification. Therefore, if other life history factors are held constant, the ontogeny of a metabolically costly structure such as a brain may occur at the expense of other cranial structures. These analyses indicate the benefits of a multifactorial approach to cranial integration using a mouse model.

  4. Fabrication of Sapphire Micro Optics by F 2-Laser Ablation

    NASA Astrophysics Data System (ADS)

    Wiesner, Markus; Ihlemann, Jürgen

    F2-laser irradiation enables high precision ablation of sapphire. A mask projection system with high numerical aperture, equipped with an optical coherence tomography module for focus control, delivers submicron resolution. High fluences of up to 10 J/cm2 lead to smooth, crack free surfaces. Various micro-optical elements like fiber tip lenses, gratings, and diffractive optical elements can be manufactured this way.

  5. Optical assembly of bio-hybrid micro-robots.

    PubMed

    Barroso, Álvaro; Landwerth, Shirin; Woerdemann, Mike; Alpmann, Christina; Buscher, Tim; Becker, Maike; Studer, Armido; Denz, Cornelia

    2015-04-01

    The combination of micro synthetic structures with bacterial flagella motors represents an actual trend for the construction of self-propelled micro-robots. The development of methods for fabrication of these bacteria-based robots is a first crucial step towards the realization of functional miniature and autonomous moving robots. We present a novel scheme based on optical trapping to fabricate living micro-robots. By using holographic optical tweezers that allow three-dimensional manipulation in real time, we are able to arrange the building blocks that constitute the micro-robot in a defined way. We demonstrate exemplarily that our method enables the controlled assembly of living micro-robots consisting of a rod-shaped prokaryotic bacterium and a single elongated zeolite L crystal, which are used as model of the biological and abiotic components, respectively. We present different proof-of-principle approaches for the site-selective attachment of the bacteria on the particle surface. The propulsion of the optically assembled micro-robot demonstrates the potential of the proposed method as a powerful strategy for the fabrication of bio-hybrid micro-robots. PMID:25681045

  6. Micro- and Nanotechnologies for Optical Neural Interfaces

    PubMed Central

    Pisanello, Ferruccio; Sileo, Leonardo; De Vittorio, Massimo

    2016-01-01

    In last decade, the possibility to optically interface with the mammalian brain in vivo has allowed unprecedented investigation of functional connectivity of neural circuitry. Together with new genetic and molecular techniques to optically trigger and monitor neural activity, a new generation of optical neural interfaces is being developed, mainly thanks to the exploitation of both bottom-up and top-down nanofabrication approaches. This review highlights the role of nanotechnologies for optical neural interfaces, with particular emphasis on new devices and methodologies for optogenetic control of neural activity and unconventional methods for detection and triggering of action potentials using optically-active colloidal nanoparticles. PMID:27013939

  7. Grinding aspheric and freeform micro-optical molds

    NASA Astrophysics Data System (ADS)

    Tohme, Yazid E.

    2007-02-01

    Fueled by the need for better performing optics, glass optics are now replacing plastic optics in many industrial and consumer electronic devices. One of these devices is the mobile phone camera. The optical sub-assembly in a mobile phone includes several micro lenses that are spherical and/or aspherical in shape and require form tolerances in the submicron range. These micro glass lenses are mass produced by a replication process known as glass press molding. The process entails the compression of a glass gob between two precise optical quality molds at an elevated temperature, usually near the transition temperature of the glass material. The elevated forces and temperatures required in the glass molding process limits the materials of the molds to very tough materials such as tungsten carbide or silicon carbide. These materials can withstand large pressing forces at high temperatures without any significant deformation. These materials offer great mechanical properties for glass press molding but they are also a challenge to machine to submicron accuracy. The work in this paper discusses a deterministic micro grinding manufacturing process referred to as wheel normal grinding, which is utilized to produce these optical quality molds. Wheel normal grinding is more accurate and more deterministic than most other grinding techniques and can produce molds to the form and finish tolerances required for optical molding. This method relies on the ability to recognize and compensate for grinding wheel wear and machine repeatable errors. Results will be presented to illustrate the accuracy of this micro grinding technique.

  8. Eye vision system using programmable micro-optics and micro-electronics

    NASA Astrophysics Data System (ADS)

    Riza, Nabeel A.; Amin, M. Junaid; Riza, Mehdi N.

    2014-02-01

    Proposed is a novel eye vision system that combines the use of advanced micro-optic and microelectronic technologies that includes programmable micro-optic devices, pico-projectors, Radio Frequency (RF) and optical wireless communication and control links, energy harvesting and storage devices and remote wireless energy transfer capabilities. This portable light weight system can measure eye refractive powers, optimize light conditions for the eye under test, conduct color-blindness tests, and implement eye strain relief and eye muscle exercises via time sequenced imaging. Described is the basic design of the proposed system and its first stage system experimental results for vision spherical lens refractive error correction.

  9. MicroCT Morphometry Analysis of Mouse Cancellous Bone: Intra- and Inter-system Reproducibility

    PubMed Central

    Verdelis, K.; Lukashova, L.; Atti, E.; Mayer-Kuckuk, P.; Peterson, M.G.E.; Tetradis, S.; Boskey, A.L.; van der Meulen, M.C.H.

    2012-01-01

    The agreement between measurements and the relative performance reproducibility among different microcomputed tomography (microCT) systems, especially at voxel sizes close to the limit of the instruments, is not known. To compare this reproducibility 3D morphometric analyses of mouse cancellous bone from distal femoral epiphyses were performed using three different ex vivo microCT systems: GE eXplore Locus SP, Scanco μCT35 and Skyscan 1172. Scans were completed in triplicate at 12μm and 8μm voxel sizes and morphometry measurements, from which relative values and dependence on voxel size were examined. Global and individual visually assessed thresholds were compared. Variability from repeated scans at 12μm voxel size was also examined. Bone volume fraction and trabecular separation values were similar, while values for relative bone surface, trabecular thickness and number varied significantly across the three systems. The greatest differences were measured in trabecular thickness (up to 236%) and number (up to 218%). The relative dependence of measurements on voxel size was highly variable for the trabecular number (from 0% to 20% relative difference between measurements from 12μm and 8μm voxel size scans, depending on the system). The intra-system reproducibility of all trabecular measurements was also highly variable across the systems and improved for BV/TV in all the systems when a smaller voxel size was used. It improved using a smaller voxel size in all the other parameters examined for the Scanco system, but not consistently so for the GE or the Skyscan system. Our results indicate trabecular morphometry measurements should not be directly compared across microCT systems. In addition, the conditions, including voxel size, for trabecular morphometry studies in mouse bone should be chosen based on the specific microCT system and the measurements of main interest. PMID:21621659

  10. Adaptive region of interest method for analytical micro-CT reconstruction.

    PubMed

    Yang, Wanneng; Xu, Xiaochun; Bi, Kun; Zeng, Shaoqun; Liu, Qian; Chen, Shangbin

    2011-01-01

    The real-time imaging is important in automatic successive inspection with micro-computerized tomography (micro-CT). Generally, the size of the detector is chosen according to the most probable size of the measured object to acquire all the projection data. Given enough imaging area and imaging resolution of X-ray detector, the detector is larger than specimen projection area, which results in redundant data in the Sinogram. The process of real-time micro-CT is computation-intensive because of the large amounts of source and destination data. The speed of the reconstruction algorithm can't always meet the requirements of real-time applications. A preprocessing method called adaptive region of interest (AROI), which detects the object's boundaries automatically to focus the active Sinogram regions, is introduced into the analytical reconstruction algorithm in this paper. The AROI method reduces the volume of the reconstructing data and thus directly accelerates the reconstruction process. It has been further shown that image quality is not compromised when applying AROI, while the reconstruction speed is increased as the square of the ratio of the sizes of the detector and the specimen slice. In practice, the conch reconstruction experiment indicated that the process is accelerated by 5.2 times with AROI and the imaging quality is not degraded. Therefore, the AROI method improves the speed of analytical micro-CT reconstruction significantly. PMID:21422587

  11. Commissioning of a novel microCT/RT system for small animal conformal radiotherapy

    NASA Astrophysics Data System (ADS)

    Rodriguez, Manuel; Zhou, Hu; Keall, Paul; Graves, Edward

    2009-06-01

    The purpose of this work was to commission a 120 kVp photon beam produced by a micro-computed tomography (microCT) scanner for use in irradiating mice to therapeutic doses. A variable-aperture collimator has been integrated with a microCT scanner to allow the delivery of beams with pseudocircular profiles of arbitrary width between 0.1 and 6.0 cm. The dose rate at the isocenter of the system was measured using ion chamber and gafchromic EBT film as 1.56-2.13 Gy min-1 at the water surface for field diameters between 0.2 and 6.0 cm. The dose rate decreases approximately 10% per every 5 mm depth in water for field diameters between 0.5 and 1.0 cm. The flatness, symmetry and penumbra of the beam are 3.6%, 1.0% and 0.5 mm, respectively. These parameters are sufficient to accurately conform the radiation dose delivered to target organs on mice. The irradiated field size is affected principally by the divergence of the beam. In general, the beam has appropriate dosimetric characteristics to accurately deliver the dose to organs inside the mice's bodies. Using multiple beams delivered from a variety of angular directions, targets as small as 2 mm may be irradiated while sparing surrounding tissue. This microCT/RT system is a feasible tool to irradiate mice using treatment planning and delivery methods analogous to those applied to humans.

  12. Interpreting pathologies in extant and extinct archosaurs using micro-CT

    PubMed Central

    Garwood, Russell J.; Lowe, Tristan; Withers, Philip J.; Manning, Phillip L.

    2015-01-01

    Palaeopathology offers unique insight to the healing strategies of extinct organisms, permitting questions concerning bone physiology to be answered in greater depth. Unfortunately, most palaeopathological studies are confined to external morphological interpretations due to the destructive nature of traditional methods of study. This limits the degree of reliable diagnosis and interpretation possible. X-ray MicroTomography (micro-CT, XMT) provides a non-destructive means of analysing the internal three-dimensional structure of pathologies in both extant and extinct individuals, at higher resolutions than possible with medical scanners. In this study, we present external and internal descriptions of pathologies in extant and extinct archosaurs using XMT. This work demonstrates that the combination of external/internal diagnosis that X-ray microtomography facilitates is crucial when differentiating between pathological conditions. Furthermore, we show that the use of comparative species, both through direct analysis and from the literature, provides key information for diagnosing between vertebrate groups in the typical pathological conditions and physiological processes. Micro-CT imaging, combined with comparative observations of extant species, provides more detailed and reliable interpretation of palaeopathologies. Micro-CT is an increasingly accessible tool, which will provide key insights for correctly interpreting vertebrate pathologies in the future. PMID:26246971

  13. Stress and strain distribution in demineralized enamel: A micro-CT based finite element study.

    PubMed

    Neves, Aline Almeida; Coutinho, Eduardo; Alves, Haimon Diniz Lopes; de Assis, Joaquim Teixeira

    2015-10-01

    Physiological oral mechanical forces may play a role on the progression of enamel carious lesions to cavitation. Thus, the aim of this study was to describe, by 3D finite element analysis, stress, and strain patterns in sound and carious enamel after a simulated occlusal load. Micro-CT based models were created and meshed with tetrahedral elements (based on an extracted third molar), namely: a sound (ST) and a carious tooth (CT). For the CT, enamel material properties were assigned according to the micro-CT gray values. Below the threshold corresponding to the enamel lesion (2.5 g/cm(3) ) lower and isotropic elastic modulus was assigned (E = 18 GPa against E1  = 80 GPa, E2  = E3  = 20 GPa for sound enamel). Both models were imported into a FE solver where boundary conditions were assigned and a pressure load (500 MPa) was applied at the occlusal surface. A linear static analysis was performed, considering anisotropy in sound enamel. ST showed a more efficient transfer of maximum principal stress from enamel to the dentin layer, while for the CT, enamel layer was subjected to higher and concentrated loads. Maximum principal strain distributions were seen at the carious enamel surface, especially at the central fossa, correlating to the enamel cavity seen at the original micro-CT model. It is possible to conclude that demineralized enamel compromises appropriate stress transfer from enamel to dentin, contributing to the odds of fracture and cavitation. Enamel fracture over a dentin lesion may happen as one of the normal pathways to caries progression and may act as a confounding factor during clinical diagnostic decisions. PMID:26240030

  14. Progress with MEMS x-ray micro pore optics

    NASA Astrophysics Data System (ADS)

    Ezoe, Yuichiro; Moriyama, Teppei; Ogawa, Tomohiro; Kakiuchi, Takuya; Ohashi, Takaya; Mitsuishi, Ikuyuki; Mitsuda, Kazuhisa; Horade, Mitsuhiro; Sugiyama, Susumu; Riveros, Raul E.; Yamaguchi, Hitomi; Kanamori, Yoshiaki; Morishita, Kohei; Nakajima, Kazuo; Maeda, Ryutaro

    2012-09-01

    Our development of ultra light-weight X-ray micro pore optics based on MEMS (Micro Electro Mechanical System) technologies is described. Using dry etching or X-ray lithography and electroplating, curvilinear sidewalls through a flat wafer are fabricated. Sidewalls vertical to the wafer surface are smoothed by use of high temperature annealing and/or magnetic field assisted finishing to work as X-ray mirrors. The wafer is then deformed to a spherical shape. When two spherical wafers with different radii of curvature are stacked, the combined system will be an approximated Wolter type-I telescope. This method in principle allows high angular resolution and ultra light-weight X-ray micro pore optics. In this paper, performance of a single-stage optic, coating of a heavy metal on sidewalls with atomic layer deposition, and assembly of a Wolter type-I telescope are reported.

  15. Experimental Rock Deformation under micro-CT: ERDμ

    NASA Astrophysics Data System (ADS)

    Tisato, Nicola; Zhao, Qi; Biryukov, Anton; Grasselli, Giovanni

    2015-04-01

    sequestration it would be extremely useful understanding the impact of the gas-water-rock reactions on the rock elastic properties. Potentially, the imaging of the internal structure and fluid distribution in the sample, combined with the measurement of 1/Q, could serve to this goal helping subsurface monitoring and surveying. This is the primary purpose of our research: uncovering the relationships between i) saturation and dissolution-precipitation, and ii) the elastic properties of a rock. The present contribution reports the design of a new high-pressure X-Ray transparent vessel which can fit and perform measurements inside the X-Ray computed tomography apparatus (μCT) installed at the University of Toronto. Hence, the scientist can measure changes in 1/Q in the sample and, simultaneously, link them to saturation variations, or precipitation-dissolution of minerals. We discuss how the use of the μCT will allow shedding light on the physics of 1/Q, and present the preliminary results obtained with the new vessel in the μCT. This technological development, together with the results already obtained, will enrich the knowledge of seismic wave attenuation mechanisms for partially saturated rocks to aid geophysical methods.

  16. X-ray micro-CT scanner for small animal imaging based on Timepix detector technology

    NASA Astrophysics Data System (ADS)

    Dudak, Jan; Zemlicka, Jan; Krejci, Frantisek; Polansky, Stepan; Jakubek, Jan; Mrzilkova, Jana; Patzelt, Matej; Trnka, Jan

    2015-02-01

    We describe a newly developed compact micro-CT scanner with rotating gantry equipped with a Timepix Quad hybrid pixel semiconductor detector and a micro-focus X-ray tube providing spatial resolution down to 30 μm. The resolving power of the device in relation to soft tissue sensitivity is demonstrated using a tissue-equivalent phantom and different types of biological samples. The results demonstrate that the use of noiseless particle counting detectors is a promising way to achieve sufficient soft tissue contrast even without any contrast agents.

  17. Micro-optical-mechanical system photoacoustic spectrometer

    DOEpatents

    Kotovsky, Jack; Benett, William J.; Tooker, Angela C.; Alameda, Jennifer B.

    2013-01-01

    All-optical photoacoustic spectrometer sensing systems (PASS system) and methods include all the hardware needed to analyze the presence of a large variety of materials (solid, liquid and gas). Some of the all-optical PASS systems require only two optical-fibers to communicate with the opto-electronic power and readout systems that exist outside of the material environment. Methods for improving the signal-to-noise are provided and enable mirco-scale systems and methods for operating such systems.

  18. A Correlative Method for Imaging Identical Regions of Samples by Micro-CT, Light Microscopy, and Electron Microscopy

    PubMed Central

    Sengle, Gerhard; Tufa, Sara F.; Sakai, Lynn Y.; Zulliger, Martin A.

    2013-01-01

    We present a method in which a precise region of interest within an intact organism is spatially mapped in three dimensions by non-invasive micro-computed X-ray tomography (micro-CT), then further evaluated by light microscopy (LM) and transmission electron microscopy (TEM). Tissues are prepared as if for TEM including osmium fixation, which imparts soft tissue contrast in the micro-CT due to its strong X-ray attenuation. This method may therefore be applied to embedded, archived TEM samples. Upon selection of a two-dimensional (2-D) projection from a region of interest (ROI) within the three-dimensional volume, the epoxy-embedded sample is oriented for microtomy so that the sectioning plane is aligned with the micro-CT projection. Registration is verified by overlaying LM images with 2-D micro-CT projections. Structures that are poorly resolved in the micro-CT may be evaluated at TEM resolution by observing the next serial ultrathin section, thereby accessing the same ROI by all three imaging techniques. We compare white adipose tissue within the forelimbs of mice harboring a lipid-altering mutation with their littermate controls. We demonstrate that individual osmium-stained lipid droplets as small as 15 µm and separated by as little as 35 µm may be discerned as separate entities in the micro-CT, validating this to be a high-resolution, non-destructive technique for evaluation of fat content. PMID:23264636

  19. Extracting alveolar structure of human lung tissue specimens based on surface skeleton representation from 3D micro-CT images

    NASA Astrophysics Data System (ADS)

    Ishimori, Hiroyuki; Kawata, Yoshiki; Niki, Noboru; Nakaya, Yoshihiro; Ohmatsu, Hironobu; Matsui, Eisuke; Fujii, Masashi; Moriyama, Noriyuki

    2007-03-01

    We have developed a Micro CT system for understanding lung function at a high resolution of the micrometer order (up to 5µm in spatial resolution). Micro CT system enables the removal specimen of lungs to be observed at micro level, has expected a big contribution for micro internal organs morphology and the image diagnosis study. In this research, we develop system to visualize lung microstructures in three dimensions from micro CT images and analyze them. They characterize in that high CT value of the noise area is, and the difficulty of only using threshold processing to extract the alveolar wall of micro CT images. Thus, we are developing a method of extracting the alveolar wall with surface thinning algorithm. In this report, we propose the method which reduces the excessive degeneracy of figure which caused by surface thinning process. And, we apply this algorithm to the micro CT image of the actual pulmonary specimen. It is shown that the extraction of the alveolus wall becomes possible in the high precision.

  20. Contrast Agents for Quantitative MicroCT of Lung Tumors in Mice

    PubMed Central

    Lalwani, Kush; Giddabasappa, Anand; Li, Danan; Olson, Peter; Simmons, Brett; Shojaei, Farbod; Arsdale, Todd Van; Christensen, James; Jackson-Fisher, Amy; Wong, Anthony; Lappin, Patrick B; Eswaraka, Jeetendra

    2013-01-01

    The identification and quantitative evaluation of lung tumors in mouse models is challenging and an unmet need in preclinical arena. In this study, we developed a noninvasive contrast-enhanced microCTCT) method to longitudinally evaluate and quantitate lung tumors in mice. Commercially available μCT contrast agents were compared to determine the optimal agent for visualization of thoracic blood vessels and lung tumors in naïve mice and in non-small-cell lung cancer models. Compared with the saline control, iopamidol and iodinated lipid agents provided only marginal increases in contrast resolution. The inorganic nanoparticulate agent provided the best contrast and visualization of thoracic vascular structures; the density contrast was highest at 15 min after injection and was stable for more than 4 h. Differential contrast of the tumors, vascular structures, and thoracic air space by the nanoparticulate agent enabled identification of tumor margins and accurate quantification. μCT data correlated closely with traditional histologic measurements (Pearson correlation coefficient, 0.995). Treatment of ELM4–ALK mice with crizotinib yielded 65% reduction in tumor size and thus demonstrated the utility of quantitative μCT in longitudinal preclinical trials. Overall and among the 3 agents we tested, the inorganic nanoparticulate product was the best commercially available contrast agent for visualization of thoracic blood vessels and lung tumors. Contrast-enhanced μCT imaging is an excellent noninvasive method for longitudinal evaluation during preclinical lung tumor studies. PMID:24326223

  1. Combined micro CT and histopathology for evaluation of skeletal metastasis in live animals

    PubMed Central

    Geffre, Christopher P; Pond, Erika; Pond, Gerald D; Sroka, Isis C; Gard, Jaime M; Skovan, Bethany A; Meek, William E; Landowski, Terry H; Nagle, Raymond B; Cress, Anne E

    2015-01-01

    Bone is a favored site for solid tumor metastasis, especially among patients with breast, lung or prostate carcinomas. Micro CT is a powerful and inexpensive tool that can be used to investigate tumor progression in xenograft models of human disease. Many previous studies have relied on terminal analysis of harvested bones to document metastatic tumor activity. The current protocol uses live animals and combines sequential micro CT evaluation of lesion development with matched histopathology at the end of the study. The approach allows for both rapid detection and evaluation of bone lesion progression in live animals. Bone resident tumors are established either by direct (intraosseous) or arterial (intracardiac) injection, and lesion development is evaluated for up to eight weeks. This protocol provides a clinically relevant method for investigating bone metastasis progression and the development of osteotropic therapeutic strategies for the treatment of bone metastases. PMID:25901201

  2. Development of a combined microSPECT/CT system for small animal imaging

    NASA Astrophysics Data System (ADS)

    Sun, Mingshan

    Modern advances in the biomedical sciences have placed increased attention on small animals such as mice and rats as models of human biology and disease in biological research and pharmaceutical development. Their small size and fast breeding rate, their physiologic similarity to human, and, more importantly, the availability of sophisticated genetic manipulations, all have made mice and rats the laboratory mammals of choice in these experimental studies. However, the increased use of small animals in biomedical research also calls for new instruments that can measure the anatomic and metabolic information noninvasively with adequate spatial resolution and measurement sensitivity to facilitate these studies. This dissertation describes the engineering development of a combined single photon emission computed tomography (SPECT) and X-ray computed tomography (CT) system dedicated for small animals imaging. The system aims to obtain both the anatomic and metabolic images with submillimeter spatial resolution in a way that the data can be correlated to provide improved image quality and to offer more complete biological evaluation for biomedical studies involving small animals. The project requires development of complete microSPECT and microCT subsystems. Both subsystems are configured with a shared gantry and animal bed with integrated instrumentation for data acquisition and system control. The microCT employs a microfocus X-ray tube and a CCD-based detector for low noise, high resolution imaging. The microSPECT utilizes three semiconductor detectors coupled with pinhole collimators. A significant contribution of this dissertation project is the development of iterative algorithms with geometrical compensation that allows radionuclide images to be reconstructed at submillimeter spatial resolution, but with significantly higher detection efficiency than conventional methods. Both subsystems are capable of helical scans, offering lengthened field of view and improved

  3. Recent Progress Validating the HADES Model of LLNL's HEAF MicroCT Measurements

    SciTech Connect

    White, W. T.; Bond, K. C.; Lennox, K. P.; Aufderheide, M. B.; Seetho, I. M.; Roberson, G. P.

    2014-07-17

    This report compares recent HADES calculations of x-ray linear attenuation coefficients to previous MicroCT measurements made at Lawrence Livermore National Laboratory’s High Energy Applications Facility (HEAF). The chief objective is to investigate what impact recent changes in HADES modeling have on validation results. We find that these changes have no obvious effect on the overall accuracy of the model. Detailed comparisons between recent and previous results are presented.

  4. Increased Echogenicity and Radiodense Foci on Echocardiogram and MicroCT in Murine Myocarditis

    PubMed Central

    Dalton, Nancy D.; Gu, Yusu; Chao, Chieh-Ju; Peterson, Kirk L.; Knowlton, Kirk U.

    2016-01-01

    Objectives To address the question as to whether echocardiographic and/or microcomputed tomography (microCT) analysis can be utilized to assess the extent of Coxsackie B virus (CVB) induced myocarditis in the absence of left ventricular dysfunction in the mouse. Background Viral myocarditis is a significant clinical problem with associated inflammation of the myocardium and myocardial injury. Murine models of myocarditis are commonly used to study the pathophysiology of the disease, but methods for imaging the mouse myocardium have been limited to echocardiographic assessment of ventricular dysfunction and, to a lesser extent, MRI imaging. Methods Using a murine model of myocarditis, we used both echocardiography and microCT to assess the extent of myocardial involvement in murine myocarditis using both wild-type mice and CVB cleavage-resistant dystrophin knock-in mice. Results Areas of increased echogenicity were only observed in the myocardium of Coxsackie B virus infected mice. These echocardiographic abnormalities correlated with the extent of von Kossa staining (a marker of membrane permeability), inflammation, and fibrosis. Given that calcium phosphate uptake as imaged by von Kossa staining might also be visualized using microCT, we utilized microCT imaging which allowed for high-resolution, 3-dimensional images of radiodensities that likely represent calcium phosphate uptake. As with echocardiography, only mice infected with Coxsackie B virus displayed abnormal accumulation of calcium within individual myocytes indicating increased membrane permeability only upon exposure to virus. Conclusions These studies demonstrate new, quantitative, and semi-quantitative imaging approaches for the assessment of myocardial involvement in the setting of viral myocarditis in the commonly utilized mouse model of viral myocarditis. PMID:27486657

  5. Micro-computed tomography (CT) based assessment of dental regenerative therapy in the canine mandible model

    NASA Astrophysics Data System (ADS)

    Khobragade, P.; Jain, A.; Setlur Nagesh, S. V.; Andreana, S.; Dziak, R.; Sunkara, S. K.; Sunkara, S.; Bednarek, D. R.; Rudin, S.; Ionita, C. N.

    2015-03-01

    High-resolution 3D bone-tissue structure measurements may provide information critical to the understanding of the bone regeneration processes and to the bone strength assessment. Tissue engineering studies rely on such nondestructive measurements to monitor bone graft regeneration area. In this study, we measured bone yield, fractal dimension and trabecular thickness through micro-CT slices for different grafts and controls. Eight canines underwent surgery to remove a bone volume (defect) in the canine's jaw at a total of 44 different locations. We kept 11 defects empty for control and filled the remaining ones with three regenerative materials; NanoGen (NG), a FDA-approved material (n=11), a novel NanoCalcium Sulfate (NCS) material (n=11) and NCS alginate (NCS+alg) material (n=11). After a minimum of four and eight weeks, the canines were sacrificed and the jaw samples were extracted. We used a custombuilt micro-CT system to acquire the data volume and developed software to measure the bone yield, fractal dimension and trabecular thickness. The software used a segmentation algorithm based on histograms derived from volumes of interest indicated by the operator. Using bone yield and fractal dimension as indices we are able to differentiate between the control and regenerative material (p<0.005). Regenerative material NCS showed an average 63.15% bone yield improvement over the control sample, NCS+alg showed 55.55% and NanoGen showed 37.5%. The bone regeneration process and quality of bone were dependent upon the position of defect and time period of healing. This study presents one of the first quantitative comparisons using non-destructive Micro-CT analysis for bone regenerative material in a large animal with a critical defect model. Our results indicate that Micro-CT measurement could be used to monitor invivo bone regeneration studies for greater regenerative process understanding.

  6. Automated segmentation of murine lung tumors in x-ray micro-CT images

    NASA Astrophysics Data System (ADS)

    Swee, Joshua K. Y.; Sheridan, Clare; de Bruin, Elza; Downward, Julian; Lassailly, Francois; Pizarro, Luis

    2014-03-01

    Recent years have seen micro-CT emerge as a means of providing imaging analysis in pre-clinical study, with in-vivo micro-CT having been shown to be particularly applicable to the examination of murine lung tumors. Despite this, existing studies have involved substantial human intervention during the image analysis process, with the use of fully-automated aids found to be almost non-existent. We present a new approach to automate the segmentation of murine lung tumors designed specifically for in-vivo micro-CT-based pre-clinical lung cancer studies that addresses the specific requirements of such study, as well as the limitations human-centric segmentation approaches experience when applied to such micro-CT data. Our approach consists of three distinct stages, and begins by utilizing edge enhancing and vessel enhancing non-linear anisotropic diffusion filters to extract anatomy masks (lung/vessel structure) in a pre-processing stage. Initial candidate detection is then performed through ROI reduction utilizing obtained masks and a two-step automated segmentation approach that aims to extract all disconnected objects within the ROI, and consists of Otsu thresholding, mathematical morphology and marker-driven watershed. False positive reduction is finally performed on initial candidates through random-forest-driven classification using the shape, intensity, and spatial features of candidates. We provide validation of our approach using data from an associated lung cancer study, showing favorable results both in terms of detection (sensitivity=86%, specificity=89%) and structural recovery (Dice Similarity=0.88) when compared against manual specialist annotation.

  7. Development of a MicroCT-Based Image-Guided Conformal Radiotherapy System for Small Animals

    PubMed Central

    Zhou, Hu; Rodriguez, Manuel; van den Haak, Fred; Nelson, Geoffrey; Jogani, Rahil; Xu, Jiali; Zhu, Xinzhi; Xian, Yongjiang; Tran, Phuoc T.; Felsher, Dean W.; Keall, Paul J.; Graves, Edward E.

    2009-01-01

    Purpose The need for clinically-relevant radiation therapy technology for the treatment of preclinical models of disease has spurred the development of a variety of dedicated platforms for small animal irradiation. Our group has taken the approach of adding the ability to deliver conformal radiotherapy to an existing 120 kVp micro-computed tomography (microCT) scanner. Methods A GE eXplore RS120 microCT scanner was modified by the addition of a two-dimensional subject translation stage and a variable aperture collimator. Quality assurance protocols for these devices, including measurement of translation stage positioning accuracy, collimator aperture accuracy, and collimator alignment with the x-ray beam, were devised. Use of this system for image-guided radiotherapy was assessed by irradiation of a solid water phantom as well as of two mice bearing spontaneous MYC-induced lung tumors. Radiation damage was assessed ex vivo by immunohistochemical detection of γH2AX foci. Results The positioning error of the translation stage was found to be less than 0.05 mm, while after alignment of the collimator with the x-ray axis through adjustment of its displacement and rotation, the collimator aperture error was less than 0.1 mm measured at isocenter. CT image-guided treatment of a solid water phantom demonstrated target localization accuracy to within 0.1 mm. γH2AX foci were detected within irradiated lung tumors in mice, with contralateral lung tissue displaying background staining. Conclusions Addition of radiotherapy functionality to a microCT scanner is an effective means of introducing image-guided radiation treatments into the preclinical setting. This approach has been shown to facilitate small animal conformal radiotherapy while leveraging existing technology. PMID:20395069

  8. A method to quantify and visualize femoral head intraosseous arteries by micro-CT.

    PubMed

    Qiu, Xing; Shi, Xiaotian; Ouyang, Jun; Xu, Dachuan; Zhao, Dewei

    2016-08-01

    We describe a technique for perfusing a barium sulphate suspension into the intraosseous artery. Following the perfusion of abarium sulphate suspension into 14 fresh lower limbs of Chinese cadavers, micro-CT scanning was applied to digitize, quantify and visualize the intraosseous arteries in the human femoral heads. Then, the femoral heads were removed and subjected to micro-CT scanning. The data were imported into the amira and mimics programs to reconstruct and quantify the intraosseous arteries. The femoral head intraosseous artery lengths, areas, volumes, and femoral head bone volumes were quantified. The artery densities and artery ratios were calculated and analysed with independent-samples t-tests. The intraosseous vasculature volume renderings were displayed as screenshots and videos made with amira. Many intraosseous artery study technologies were compared. The barium sulphate suspension was milky white in colour. The perfusion of the barium sulphate suspension followed by micro-CT scanning provided a good representation of the intraosseous artery. The femoral head intraosseous artery lengths, areas and volumes, and the femoral head bone volumes were displayed as the X¯±S . No differences were observed between the left and right femoral head intraosseous arteries in terms of the artery densities or artery ratios. The volume renderings and 3-D orthogonal projections displayed the overall distributions of the intraosseous arteries. The videos clearly demonstrated the entry sites of the nutrition-carrying arteries, their courses and branches, and the intraosseous arterial anastomoses. Our technique is the simplest and least time-consuming method of producing accurate vascular three-dimensional reconstructions. The perfusion of a barium sulphate suspension into intraosseous arteries combined with micro-CT scanning can deliver high-resolution 3-D digitized data and images of intraosseous arteries. This technique does not require bone decalcification or bone

  9. Biopatterning of Silk Proteins for Soft Micro-optics.

    PubMed

    Pal, Ramendra K; Kurland, Nicholas E; Wang, Congzhou; Kundu, Subhas C; Yadavalli, Vamsi K

    2015-04-29

    Silk proteins from spiders and silkworms have been proposed as outstanding candidates for soft micro-optic and photonic applications because of their optical transparency, unique biological properties, and mechanical robustness. Here, we present a method to form microstructures of the two constituent silk proteins, fibroin and sericin for use as an optical biomaterial. Using photolithography, chemically modified silk protein photoresists are patterned in 2D arrays of periodic patterns and Fresnel zone plates. Angle-dependent iridescent colors are produced in these periodic micropatterns because of the Bragg diffraction. Silk protein photolithography can used to form patterns on different substrates including flexible sheets with features of any shape with high fidelity and resolution over large areas. Finally, we show that these mechanically stable and transparent iridescent architectures are also completely biodegradable. This versatile and scalable technique can therefore be used to develop biocompatible, soft micro-optic devices that can be degraded in a controlled manner. PMID:25853731

  10. Geometric Parameters Estimation and Calibration in Cone-Beam Micro-CT.

    PubMed

    Zhao, Jintao; Hu, Xiaodong; Zou, Jing; Hu, Xiaotang

    2015-01-01

    The quality of Computed Tomography (CT) images crucially depends on the precise knowledge of the scanner geometry. Therefore, it is necessary to estimate and calibrate the misalignments before image acquisition. In this paper, a Two-Piece-Ball (TPB) phantom is used to estimate a set of parameters that describe the geometry of a cone-beam CT system. Only multiple projections of the TPB phantom at one position are required, which can avoid the rotation errors when acquiring multi-angle projections. Also, a corresponding algorithm is derived. The performance of the method is evaluated through simulation and experimental data. The results demonstrated that the proposed method is valid and easy to implement. Furthermore, the experimental results from the Micro-CT system demonstrate the ability to reduce artifacts and improve image quality through geometric parameter calibration. PMID:26371008

  11. Geometric Parameters Estimation and Calibration in Cone-Beam Micro-CT

    PubMed Central

    Zhao, Jintao; Hu, Xiaodong; Zou, Jing; Hu, Xiaotang

    2015-01-01

    The quality of Computed Tomography (CT) images crucially depends on the precise knowledge of the scanner geometry. Therefore, it is necessary to estimate and calibrate the misalignments before image acquisition. In this paper, a Two-Piece-Ball (TPB) phantom is used to estimate a set of parameters that describe the geometry of a cone-beam CT system. Only multiple projections of the TPB phantom at one position are required, which can avoid the rotation errors when acquiring multi-angle projections. Also, a corresponding algorithm is derived. The performance of the method is evaluated through simulation and experimental data. The results demonstrated that the proposed method is valid and easy to implement. Furthermore, the experimental results from the Micro-CT system demonstrate the ability to reduce artifacts and improve image quality through geometric parameter calibration. PMID:26371008

  12. Vascular contrast enhanced micro-CT imaging of "radiators" in the Brazilian free-tailed bat (Tadarida brasiliensis).

    PubMed

    Reichard, Jonathan D; Kunz, Thomas H; Keller, Charles; Prajapati, Suresh I

    2012-04-01

    The Brazilian free-tailed bat (Tadarida brasiliensis) exhibits a highly vascularized, hairless thermal window (or "radiator") on the proximal ventral surfaces of extended wings and body. We identified this character using thermal infrared imaging and investigated the vasculature using barium sulfate enhanced microcomputed tomography (micro-CT). Micro-CT images revealed unique arrangements of arteries and veins in the region of the radiator positioned perpendicular to the axis of the body. Coupling micro-CT imaging with analysis of surface temperature profiles, we concluded that radiators aid in thermoregulation during flight in variable environments. This study represents the first application of contrast enhanced micro-CT to visualize vasculature of bats and thus exhibits a promising technique for further investigations of cardiovascular function and anatomy in bats. PMID:22282439

  13. 3D dosimetry by optical-CT scanning

    PubMed Central

    Oldham, Mark

    2007-01-01

    The need for an accurate, practical, low-cost 3D dosimetry system is becoming ever more critical as modern dose delivery techniques increase in complexity and sophistication. A recent report from the Radiological Physics Center (RPC) (1), revealed that 38% of institutions failed the head-and-neck IMRT phantom credentialing test at the first attempt. This was despite generous passing criteria (within 7% dose-difference or 4mm distance-to-agreement) evaluated at a half-dozen points and a single axial plane. The question that arises from this disturbing finding is – what percentage of institutions would have failed if a comprehensive 3D measurement had been feasible, rather than measurements restricted to the central film-plane and TLD points? This question can only be adequately answered by a comprehensive 3D-dosimetry system, which presents a compelling argument for its development as a clinically viable low cost dosimetry solution. Optical-CT dosimetry is perhaps the closest system to providing such a comprehensive solution. In this article, we review the origins and recent developments of optical-CT dosimetry systems. The principle focus is on first generation systems known to have highest accuracy but longer scan times. PMID:17460781

  14. A multi-resolution approach to retrospectively-gated cardiac micro-CT reconstruction

    NASA Astrophysics Data System (ADS)

    Clark, D. P.; Johnson, G. A.; Badea, C. T.

    2014-03-01

    In preclinical research, micro-CT is commonly used to provide anatomical information; however, there is significant interest in using this technology to obtain functional information in cardiac studies. The fastest acquisition in 4D cardiac micro-CT imaging is achieved via retrospective gating, resulting in irregular angular projections after binning the projections into phases of the cardiac cycle. Under these conditions, analytical reconstruction algorithms, such as filtered back projection, suffer from streaking artifacts. Here, we propose a novel, multi-resolution, iterative reconstruction algorithm inspired by robust principal component analysis which prevents the introduction of streaking artifacts, while attempting to recover the highest temporal resolution supported by the projection data. The algorithm achieves these results through a unique combination of the split Bregman method and joint bilateral filtration. We illustrate the algorithm's performance using a contrast-enhanced, 2D slice through the MOBY mouse phantom and realistic projection acquisition and reconstruction parameters. Our results indicate that the algorithm is robust to under sampling levels of only 34 projections per cardiac phase and, therefore, has high potential in reducing both acquisition times and radiation dose. Another potential advantage of the multi-resolution scheme is the natural division of the reconstruction problem into a large number of independent sub-problems which can be solved in parallel. In future work, we will investigate the performance of this algorithm with retrospectively-gated, cardiac micro-CT data.

  15. MicroCT detection of gunshot residue in fresh and decomposed firearm wounds.

    PubMed

    Cecchetto, Giovanni; Amagliani, Alessandro; Giraudo, Chiara; Fais, Paolo; Cavarzeran, Fabiano; Montisci, Massimo; Feltrin, Giampietro; Viel, Guido; Ferrara, Santo Davide

    2012-05-01

    Gunshot residue (GSR) evidence may be altered or obscured by after-death events such as putrefaction, autolysis, and/or damage by animals. The present study aimed at evaluating and comparing the amount and differential distribution of GSR utilizing microcomputed tomography (microCT) analysis of fresh and decomposed gunshot wounds. A total of 60 experimental shootings at three different firing distances (5, 15, and 30 cm) were performed on human calves surgically amputated for medical reasons. Thirty specimens (10 for each tested distance) were immediately formalin-fixed, while the other 30 specimens were enclosed in a cowshed for 15 days, before formalin fixation (air temperature ranging from 11°C to 38°C). MicroCT analysis with three-dimensional image reconstruction detected GSR particles in all the investigated entrance wounds. In fresh specimens, GSR was concentrated on the skin surface around the entrance hole and in the epidermis and dermis layers around the cavity, while in decomposed specimens, the high density particles were detected only in the dermis layer. No GSR was detected in exit wounds of both fresh and decomposed specimens regardless of the tested firing distance. Statistical analysis demonstrated that also in decomposed wounds the amount of GSR roughly correlated with the distance from which the gun was fired, exhibiting, however, a higher variability than in fresh samples. The obtained results suggest that microCT analysis can be a valid screening tool for differentiating decomposed entrance and exit gunshot wounds. PMID:22086714

  16. Nano-stepper-driven optical shutter for applications in free-space micro-optics

    NASA Astrophysics Data System (ADS)

    Zawadzka, Justyna; Li, Lijie; Unamuno, Anartz; Uttamchandani, Deepak G.

    2002-09-01

    In this paper we report a simple design of a micro-optical shutter/attenuator. The standard MUMPS process was used to fabricate the device. A vertically erected, gold-coated, 200x300 mm side length micro-mirror was precisely placed between the end faces of two closely spaced optical fibers. The position of the micro-mirror with respect to the optical fiber end face was controlled by a nano-stepping motor array. Optical and mechanical tests were performed on the device. A 1.55 mm laser beam was sent along the optical fiber. When the micro-mirror was removed from the front of the fiber, the coupling efficiency between two fibers was -10 dBm. Once the micro-mirror was placed in the optical path the coupling efficiency dropped to -51.5 dBm. The best attenuation was obtained when the micro-mirror blocked the whole cross-section of the laser beam diameter. It is evident that the device can operate as a high precision fiber optic attenuator or shutter.

  17. Optical-CT gel-dosimetry II: Optical artifacts and geometrical distortion

    PubMed Central

    Oldham, Mark; Kim, Leonard

    2006-01-01

    There is a clear need for technology that enables accurate, high-resolution, three-dimensional (3D) measurement of intricate dose distributions associated with modern radiation treatments. A potential candidate has emerged in the form of water-equivalent “3D gel dosimetry” utilizing optical-computed- tomography (optical-CT). In a previous paper we presented basic physical characterization of an in-house prototype optical-CT scanning system. The present paper builds on that work by investigating sources of optical artifacts and geometric distortion in optical-CT scanning. Improvements in scanner design are described. Correction strategies were developed to compensate for reflection and refraction, imperfections in the water-bath, signal drift, and other effects. Refraction and reflection were identified as the principal factors causing inaccurate reconstruction of absolute attenuation coefficients. A correction specific to a given flask was developed utilizing prescans of the flask when filled with water-bath fluid, thereby isolating the refractive and reflective components for that flask. Residual artifacts were corrected by fitting a theoretical model to the well-behaved portion of these prescans and extrapolating to regions of lost data, enabling reconstruction of absolute optical-CT attenuation coefficients to within 4% of corresponding spectrophotometer values. Needle phantoms are introduced to quantify geometric distortion under a range of conditions. Radial distortion of reconstructed needle positions was reduced to <0.3 mm (0.27% of the field of view) through adjustment of the water-bath refractive index. Geometric distortion in polymer gel due to radiation-induced refractive index changes was found to be negligible under the conditions examined. The influence of scattered light on reconstructed attenuation coefficients was investigated by repeat optical-CT scans while varying the aperture of a scatter-rejecting collimator. Significant depression of

  18. Image quality assessment of a pre-clinical flat-panel volumetric micro-CT scanner

    NASA Astrophysics Data System (ADS)

    Du, Louise Y.; Lee, Ting-Yim; Holdsworth, David W.

    2006-03-01

    Small animal imaging has recently become an area of increased interest because more human diseases can be modeled in transgenic and knockout rodents. Current micro-CT systems are capable of achieving spatial resolution on the order of 10 μm, giving highly detailed anatomical information. However, the speed of data acquisition of these systems is relatively slow, when compared with clinical CT systems. Dynamic CT perfusion imaging has proven to be a powerful tool clinically in detecting and diagnosing cancer, stroke, pulmonary and ischemic heart diseases. In order to perform this technique in mice and rats, quantitative CT images must be acquired at a rate of at least 1 Hz. Recently, a research pre-clinical CT scanner (eXplore Ultra, GE Healthcare) has been designed specifically for dynamic perfusion imaging in small animals. Using an amorphous silicon flat-panel detector and a clinical slip-ring gantry, this system is capable of acquiring volumetric image data at a rate of 1 Hz, with in-plane resolution of 150 μm, while covering the entire thoracic region of a mouse or whole organs of a rat. The purpose of this study was to evaluate the principal imaging performance of the micro-CT system, in terms of spatial resolution, image uniformity, linearity, dose and voxel noise for the feasibility of imaging mice and rats. Our investigations show that 3D images can be obtained with a limiting spatial resolution of 2.7 line pairs per mm and noise of 42 HU, using an acquisition interval of 8 seconds at an entrance dose of 6.4 cGy.

  19. Bone vascularization and bone micro-architecture characterizations according to the μCT resolution

    NASA Astrophysics Data System (ADS)

    Crauste, E.; Autrusseau, F.; Guédon, Jp.; Pilet, P.; Amouriq, Y.; Weiss, P.; Giumelli, B.

    2015-03-01

    Trabecular bone and its micro-architecture are of prime importance for health. Changes of bone micro-architecture are linked to different pathological situations like osteoporosis and begin now to be understood. In a previous paper [12], we started to investigate the relationships between bone and vessels and proposed some indices of characterization for the vessels issued from those used for the bone. Our main objective in this paper is to qualify the classical values used for bone as well as those we proposed for vessels according to different acquisition parameters and for several thresholding methods used to separate bone vessels and background. This study is also based on vessels perfusion by a contrast agent (barium sulfate mixed with gelatin) before euthanasia on rats. Femurs and tibias as well as mandibles were removed after rat's death and were imaged by microCT (Skyscan 1272, Bruker, Belgium) with a resolution ranging from 18 to 3μm. The so obtained images were analyzed with various softwares (NRecon Reconstruction, CtAn, and CtVox from Bruker) in order to calculate bone and vessels micro-architecture parameters (density of bone/blood within the volume), and to know if the results both for bone and vascular micro-architecture are constant along the chosen pixel resolution. The result is clearly negative. We found a very different characterization both for bone and vessels with the 3μm acquisition. Tibia and mandibles bones were also used to show results that can be visually assessed. The largest portions of the vascular tree are orthogonal to the obtained slices of the bone. Therefore, the contrast agent appears as cylinders of various sizes.

  20. Anatomical and functional imaging of myocardial infarction in mice using micro-CT and eXIA 160 contrast agent

    PubMed Central

    Ashton, Jeffrey R.; Befera, Nicholas; Clark, Darin; Qi, Yi; Mao, Lan; Rockman, Howard A.; Johnson, G. Allan; Badea, Cristian T.

    2014-01-01

    Non-invasive small animal imaging techniques are essential for evaluation of cardiac disease and potential therapeutics. A novel preclinical iodinated contrast agent called eXIA 160 has recently been developed, which has been evaluated for micro-CT cardiac imaging. eXIA 160 creates strong contrast between blood and tissue immediately after its injection and is subsequently taken up by the myocardium and other metabolically active tissues over time. We focus on these properties of eXIA and show its use in imaging myocardial infarction in mice. Five C57BL/6 mice were imaged ~ 2 weeks after LAD coronary artery ligation. Six C57BL/6 mice were used as controls. Immediately after injection of eXIA 160, an enhancement difference between blood and myocardium of ~340 HU enabled cardiac function estimation via 4D micro-CT scanning with retrospective gating. Four hours post-injection, the healthy perfused myocardium had a contrast difference of ~140 HU relative to blood while the infarcted myocardium showed no enhancement. These differences allowed quantification of infarct size via dual energy micro-CT. In vivo micro-SPECT imaging and ex vivo TTC staining provided validation for the micro-CT findings. Root mean squared error of infarct measurements was 2.7% between micro-CT and SPECT, and 4.7% between micro-CT and TTC. Thus, micro-CT with eXIA 160 can be used to provide both morphological and functional data for preclinical studies evaluating myocardial infarction and potential therapies. Further studies are warranted to study the potential use of eXIA 160 as a CT molecular imaging tool for other metabolically active tissues in the mouse. PMID:24523061

  1. Micro-optic lens for data storage

    NASA Technical Reports Server (NTRS)

    Milster, T. D.; Trusty, R. M.; Wang, M. S.; Froehlich, F. F.; Erwin, J. Kevin

    1991-01-01

    A new type of microlens for data storage applications that has improved off-axis performance is described. The lens consists of a micro Fresnel pattern on a curved substrate. The radius of the substrate is equal to the focal length of the lens. If the pattern and substrate are thin, the combination satisfies the Abbe sine condition. Therefore, the lens is free of coma. We analyze a 0.5 numerical aperture, 0.50 mm focal length lens in detail. A 0.16 numerical aperture lens was fabricated holographically, and results are presented.

  2. Hybrid micro-/nanogels for optical sensing and intracellular imaging

    PubMed Central

    Wu, Weitai; Zhou, Shuiqin

    2010-01-01

    Hybrid micro-/nanogels are playing an increasing important part in a diverse range of applications, due to their tunable dimensions, large surface area, stable interior network structure, and a very short response time. We review recent advances and challenges in the developments of hybrid micro-/nanogels toward applications for optical sensing of pH, temperature, glucose, ions, and other species as well as for intracellular imaging. Due to their unique advantages, hybrid micro-/nanogels as optical probes are attracting substantial interests for continuous monitoring of chemical parameters in complex samples such as blood and bioreactor fluids, in chemical research and industry, and in food quality control. In particular, their intracellular probing ability enables the monitoring of the biochemistry and biophysics of live cells over time and space, thus contributing to the explanation of intricate biological processes and the development of novel diagnoses. Unlike most other probes, hybrid micro-/nanogels could also combine other multiple functions into a single probe. The rational design of hybrid micro-/nanogels will not only improve the probing applications as desirable, but also implement their applications in new arenas. With ongoing rapid advances in bionanotechnology, the well-designed hybrid micro-/nanogel probes will be able to provide simultaneous sensing, imaging diagnosis, and therapy toward clinical applications. PMID:22110866

  3. Micro-optical Distributed Sensors for Aero Propulsion Applications

    NASA Technical Reports Server (NTRS)

    Arnold, S.; Otugen, V.; Seasholtz, Richard G. (Technical Monitor)

    2003-01-01

    The objective of this research is to develop micro-opto-mechanical system (MOMS)-based sensors for time- and space-resolved measurements of flow properties in aerodynamics applications. The measurement technique we propose uses optical resonances in dielectric micro-spheres that can be excited by radiation tunneling from optical fibers. It exploits the tunneling-induced and morphology-dependent shifts in the resonant frequencies. The shift in the resonant frequency is dependent on the size, shape, and index of refraction of the micro-sphere. A physical change in the environment surrounding a micro-bead can change one or more of these properties of the sphere thereby causing a shift in frequency of resonance. The change of the resonance frequency can be detected with high resolution by scanning a frequency-tunable laser that is coupled into the fiber and observing the transmission spectrum at the output of the fiber. It is expected that, in the future, the measurement concept will lead to a system of distributed micro-sensors providing spatial data resolved in time and space. The present project focuses on the development and demonstration of temperature sensors using the morphology-dependent optical resonances although in the latter part of the work, we will also develop a pressure sensor. During the period covered in this report, the optical and electronic equipment necessary for the experimental work was assembled and the experimental setup was designed for the single sensor temperature measurements. Software was developed for real-time tracking of the optical resonance shifts. Some preliminary experiments were also carried out to detect temperature using a single bead in a water bath.

  4. Topographic optical profilometry of steep slope micro-optical transparent surfaces.

    PubMed

    Antón, Juan Carlos Martínez; Alonso, Jose; Pedrero, Jose Antonio Gómez

    2015-04-01

    Optical profilometers based on light reflection may fail at surfaces presenting steep slopes and highly curved features. Missed light, interference and diffraction at steps, peaks and valleys are some of the reasons. Consequently, blind areas or profile artifacts may be observed when using common reflection micro-optical profilometers (confocal, scanning interferometers, etc…). The Topographic Optical Profilometry by Absorption in Fluids (TOPAF) essentially avoids these limitations. In this technique an absorbing fluid fills the gap between a reference surface and the surface to profile. By comparing transmission images at two different spectral bands we obtain a reliable topographic map of the surface. In this contribution we develop a model to obtain the profile under micro-optical observation, where high numerical aperture (NA) objectives are mandatory. We present several analytical and experimental results, validating the technique's capabilities for profiling steep slopes and highly curved micro-optical surfaces with nanometric height resolution. PMID:25968777

  5. Simultaneous imaging of multiple contrast agents using full-spectrum micro-CT

    NASA Astrophysics Data System (ADS)

    Clark, D. P.; Touch, M.; Barber, W.; Badea, C. T.

    2015-03-01

    One of the major challenges for in vivo, micro-computed tomography (CT) imaging is poor soft tissue contrast. To increase contrast, exogenous contrast agents can be used as imaging probes. Combining these probes with a photon counting x-ray detector (PCXD) allows energy-sensitive CT and probe material decomposition from a series of images associated with different x-ray energies. We have implemented full-spectrum micro-CT using a PCXD and 2 keV energy sampling. We then decomposed multiple k-edge contrast materials present in an object (iodine, barium, and gadolinium) from water. Since the energy bins were quite narrow, the projection data was very noisy. This noise and further spectral distortions amplify errors in post-reconstruction material decompositions. Here, we propose and demonstrate a novel post-reconstruction denoising scheme which jointly enforces local and global gradient sparsity constraints, improving the contrast-to-noise ratio in full-spectrum micro-CT data and resultant material decompositions. We performed experiments using both calibration phantoms and ex vivo mouse data. Denoising increased the material contrast-to-noise ratio by an average of 13 times relative to filtered backprojection reconstructions. The relative decomposition error after denoising was 21%. To further improve material decomposition accuracy in future work, we also developed a model of the spectral distortions caused by PCXD imaging using known spectra from radioactive isotopes (109Cd, 133Ba). In future work, we plan to combine this model with the proposed denoising algorithm, enabling material decomposition with higher sensitivity and accuracy.

  6. Virtual commissioning of automated micro-optical assembly

    NASA Astrophysics Data System (ADS)

    Schlette, Christian; Losch, Daniel; Haag, Sebastian; Zontar, Daniel; Roßmann, Jürgen; Brecher, Christian

    2015-02-01

    In this contribution, we present a novel approach to enable virtual commissioning for process developers in micro-optical assembly. Our approach aims at supporting micro-optics experts to effectively develop assisted or fully automated assembly solutions without detailed prior experience in programming while at the same time enabling them to easily implement their own libraries of expert schemes and algorithms for handling optical components. Virtual commissioning is enabled by a 3D simulation and visualization system in which the functionalities and properties of automated systems are modeled, simulated and controlled based on multi-agent systems. For process development, our approach supports event-, state- and time-based visual programming techniques for the agents and allows for their kinematic motion simulation in combination with looped-in simulation results for the optical components. First results have been achieved for simply switching the agents to command the real hardware setup after successful process implementation and validation in the virtual environment. We evaluated and adapted our system to meet the requirements set by industrial partners-- laser manufacturers as well as hardware suppliers of assembly platforms. The concept is applied to the automated assembly of optical components for optically pumped semiconductor lasers and positioning of optical components for beam-shaping

  7. High-resolution 3D micro-CT imaging of breast microcalcifications: a preliminary analysis

    PubMed Central

    2014-01-01

    Background Detection of microcalcifications on mammograms indicates the presence of breast lesion, and the shapes of the microcalcifications as seen by conventional mammography correlates with the probability of malignancy. This preliminary study evaluated the 3D shape of breast microcalcifications using micro-computed tomography (micro-CT) and compared the findings with those obtained using anatomopathological analysis. Methods The study analyzed breast biopsy samples from 11 women with findings of suspicious microcalcifications on routine mammograms. The samples were imaged using a micro-CT (SkyScan 1076) at a resolution of 35 μm. Images were reconstructed using filtered back-projection and analyzed in 3D using surface rendering. The samples were subsequently analyzed by the pathology service. Reconstructed 3D images were compared with the corresponding histological slices. Results Anatomopathological analysis showed that 5 of 11 patients had ductal breast carcinoma in situ. One patient was diagnosed with invasive ductal carcinoma. Individual object analysis was performed on 597 microcalcifications. Malignant microcalcifications tended to be thinner and to have a smaller volume and surface area, while their surface area-to-volume ratio was greater than that of benign microcalcifications. The structure model index values were the same for malignant and benign microcalcifications. Conclusions This is the first study to use micro-CT for quantitative 3D analysis of microcalcifications. This high-resolution imaging technique will be valuable for gaining a greater understanding of the morphologic characteristics of malignant and benign microcalcifications. The presence of many small microcalcifications can be an indication of malignancy. For the larger microcalcifications, 3D parameters confirmed the more irregular shape of malignant microcalcifications. PMID:24393444

  8. Micro-CT features of intermediate gunshot wounds severely damaged by fire.

    PubMed

    Fais, Paolo; Giraudo, Chiara; Boscolo-Berto, Rafael; Amagliani, Alessandro; Miotto, Diego; Feltrin, Giampietro; Viel, Guido; Ferrara, S Davide; Cecchetto, Giovanni

    2013-03-01

    Incineration or extensive burning of the body, causing changes in the content and distribution of fluids, fixation and shrinking processes of tissues, can alter the typical macroscopic and microscopic characteristics of firearm wounds, hampering or at least complicating the reconstruction of gunshot fatalities. The present study aims at evaluating the potential role of micro-computed tomography (micro-CT) for detecting and quantifying gunshot residue (GSR) particles in experimentally produced intermediate-range gunshot wounds severely damaged by fire. Eighteen experimental shootings were performed on 18 sections of human calves surgically amputated for medical reasons at three different firing distances (5, 15 and 30 cm). Six stab wounds produced with an ice pick were used as controls. Each calf section underwent a charring cycle, being placed in a wood-burning stove for 4 min at a temperature of 400 °C. At visual inspection, the charred entrance wounds could not be differentiated from the exit lesions and the stab wounds. On the contrary, micro-CT analysis showed the presence of GSR particles in all burnt entrance gunshot wounds, while GSR was absent in the exit and stab wounds. The GSR deposits of the firearm lesions inflicted at very close distance (5 cm) were mainly constituted of huge particles (diameter >150 μm) with an irregular shape and well-delineated edges; at greater distances (15 and 30 cm), agglomerates of tiny radiopaque particles scattered in the epidermis and dermis layers were evident. Statistical analysis demonstrated that also in charred firearm wounds the amount of GSR roughly correlates with the distance from which the gun was fired. The obtained results suggest that micro-CT analysis can be a valid screening tool for identifying entrance gunshot wounds and for differentiating firearm wounds from sharp-force injuries in bodies severely damaged by fire. PMID:23010908

  9. The Use of Micro-CT with Image Segmentation to Quantify Leakage in Dental Restorations

    PubMed Central

    Carrera, Carola A.; Lan, Caixia; Escobar-Sanabria, David; Li, Yuping; Rudney, Joel; Aparicio, Conrado; Fok, Alex

    2015-01-01

    Objective To develop a method for quantifying leakage in composite resin restorations after curing, using non-destructive X-ray micro-computed tomography (micro-CT) and image segmentation. Methods Class-I cavity preparations were made in 20 human third molars, which were divided into 2 groups. Group I was restored with Z100 and Group II with Filtek LS. Micro-CT scans were taken for both groups before and after they were submerged in silver nitrate solution (AgNO3 50%) to reveal any interfacial gap and leakage at the tooth restoration interface. Image segmentation was carried out by first performing image correlation to align the before- and after-treatment images and then by image subtraction to isolate the silver nitrate penetrant for precise volume calculation. Two-tailed Student’s t-test was used to analyze the results, with the level of significance set at p<0.05. Results All samples from Group I showed silver nitrate penetration with a mean volume of 1.3 ± 0.7 mm3. In Group II, only 2 out of the 10 restorations displayed infiltration along the interface, giving a mean volume of 0.3 ± 0.3 mm3. The difference between the two groups was statistically significant (p < 0.05). The infiltration showed non-uniform patterns within the interface. Significance We have developed a method to quantify the volume of leakage using non-destructive micro-CT, silver nitrate infiltration and image segmentation. Our results confirmed that substantial leakage could occur in composite restorations that have imperfections in the adhesive layer or interfacial debonding through polymerization shrinkage. For the restorative systems investigated in this study, this occurred mostly at the interface between the adhesive system and the tooth structure. PMID:25649496

  10. Micro-CT features of intermediate gunshot wounds covered by textiles.

    PubMed

    Giraudo, Chiara; Fais, Paolo; Pelletti, Guido; Viero, Alessia; Miotto, Diego; Boscolo-Berto, Rafael; Viel, Guido; Montisci, Massimo; Cecchetto, Giovanni; Ferrara, Santo Davide

    2016-09-01

    The analysis of gunshot residue (GSR) on the clothing and the underlying skin of the victim may play an important role in the reconstruction of the shooting incident. The aim of the present study was to test micro-computed tomography (micro-CT) for the analysis of firearm wounds experimentally produced on human skin covered by textiles. Firing trials were performed on 60 sections of human calves enveloped by a single layer of fabric (cotton or jeans or leather or nylon) and 15 controls consisting of bare calves. Experimental firings were conducted in a ballistic laboratory at three different muzzle-to-target distances (5, 15, and 30 cm), using a .32 ACP pistol (Beretta Mod. 81) loaded with full-jacketed bullets coming from the same production lot (7.65 × 17 mm, Browning SR). The visual inspection revealed the classic pattern of GSR distribution on the fabrics and the skin of control samples, while only a dark ring around the entrance lesion was identified on the skin beneath the fabrics. Micro-CT analysis showed the presence of radiopaque material on all entrance wounds, with a statistically significant difference between cases and controls. No differences were found among specimens covered by fabrics, with regard to the firing distance and the type of clothing. No GSR-like deposits were detected in exit wounds. Our results suggest that micro-CT analysis may be a useful screening tool for differentiating entry from exit gunshot wounds when the covering textiles are contaminated, damaged, or missing. PMID:27325255

  11. Evaluation of the adaptation of zirconia-based fixed partial dentures using micro-CT technology.

    PubMed

    Borba, Márcia; Miranda, Walter Gomes; Cesar, Paulo Francisco; Griggs, Jason Allan; Bona, Alvaro Della

    2013-01-01

    The objective of the study was to measure the marginal and internal fit of zirconia-based all-ceramic three-unit fixed partial dentures (FPDs) (Y-TZP - LAVA, 3M-ESPE), using a novel methodology based on micro-computed tomography (micro-CT) technology. Stainless steel models of prepared abutments were fabricated to design FPDs. Ten frameworks were produced with 9 mm2 connector cross-sections using a LAVATM CAD-CAM system. All FPDs were veneered with a compatible porcelain. Each FPD was seated on the original model and scanned using micro-CT. Files were processed using NRecon and CTAn software. Adobe Photoshop and Image J software were used to analyze the cross-sectional images. Five measuring points were selected, as follows: MG - marginal gap; CA - chamfer area; AW - axial wall; AOT - axio-occlusal transition area; OA - occlusal area. Results were statistically analyzed by Kruskall-Wallis and Tukey's post hoc test (α= 0.05). There were significant differences for the gap width between the measurement points evaluated. MG showed the smallest median gap width (42 µm). OA had the highest median gap dimension (125 µm), followed by the AOT point (105 µm). CA and AW gap width values were statistically similar, 66 and 65 µm respectively. Thus, it was possible to conclude that different levels of adaptation were observed within the FPD, at the different measuring points. In addition, the micro-CT technology seems to be a reliable tool to evaluate the fit of dental restorations. PMID:24036977

  12. Characterization of operating parameters of an in vivo micro CT system

    NASA Astrophysics Data System (ADS)

    Ghani, Muhammad U.; Ren, Liqiang; Yang, Kai; Chen, Wei R.; Wu, Xizeng; Liu, Hong

    2016-03-01

    The objective of this study was to characterize the operating parameters of an in-vivo micro CT system. In-plane spatial resolution, noise, geometric accuracy, CT number uniformity and linearity, and phase effects were evaluated using various phantoms. The system employs a flat panel detector with a 127 μm pixel pitch, and a micro focus x-ray tube with a focal spot size ranging from 5-30 μm. The system accommodates three magnification sets of 1.72, 2.54 and 5.10. The in-plane cutoff frequencies (10% MTF) ranged from 2.31 lp/mm (60 mm FOV, M=1.72, 2×2 binning) to 13 lp/mm (10 mm FOV, M=5.10, 1×1 binning). The results were qualitatively validated by a resolution bar pattern phantom and the smallest visible lines were in 30-40 μm range. Noise power spectrum (NPS) curves revealed that the noise peaks exponentially increased as the geometric magnification (M) increased. True in-plane pixel spacing and slice thickness were within 2% of the system's specifications. The CT numbers in cone beam modality are greatly affected by scattering and thus they do not remain the same in the three magnifications. A high linear relationship (R2 > 0.999) was found between the measured CT numbers and Hydroxyapatite (HA) loadings of the rods of a water filled mouse phantom. Projection images of a laser cut acrylic edge acquired at a small focal spot size of 5 μm with 1.5 fps revealed that noticeable phase effects occur at M=5.10 in the form of overshooting at the boundary of air and acrylic. In order to make the CT numbers consistent across all the scan settings, scatter correction methods may be a valuable improvement for this system.

  13. The use of 2D pixel detectors in micro- and nano-CT applications

    NASA Astrophysics Data System (ADS)

    Dierick, Manuel; Van Hoorebeke, Luc; Jacobs, Patric; Masschaele, Bert; Vlassenbroeck, Jelle; Cnudde, Veerle; De Witte, Yoni

    2008-06-01

    Computed tomography or CT is a non-destructive imaging technique that uses penetrating radiation (mostly X-rays) to visualize the internal structure of a sample. The best-known example is the medical CT scanner, which has become a standard diagnostic tool in medicine, providing detailed views of the body with spatial resolutions below 1 mm. In recent years another type of CT scanner has been developed for mostly industrial and scientific applications, namely micro-CT scanners. These reached spatial resolutions down to a few microns. During 2005 the Radiation Physics research group (Department of Subatomic and Radiation Physics) and the Sedimentary Geology and Engineering Geology research group (Department of Geology and Soil Science) of the Ghent University jointly developed a modular micro-CT setup. The two main goals were to achieve a spatial resolution below 1 μm and to have a very versatile tool providing high-quality images. The source is a dual-head X-ray tube with a transmission type head with a nominal focal spot size of 900 nm below 40 kV tube voltage for high-resolution applications and a directional high-power head (up to 160 kV, up to 150 W), which enables scanning of larger samples. A six-axis sample manipulator system was assembled. The crucial component in this is an ultra-high-precision air-bearing rotation stage to keep all motion errors during rotation well below 1 μm. Depending on the application we have the choice between a number of detectors, each with its own advantages in terms of size, pixel resolution and energy sensitivity.

  14. Fast laser optical CT scanner with rotating mirror and Fresnel lenses

    NASA Astrophysics Data System (ADS)

    Conklin, J.; Deshpande, R.; Battista, J.; Jordan, K.

    2006-12-01

    Single laser beam and detector computed tomography (CT) scanner geometries provide excellent stray light rejection and these systems likely provide the largest dynamic range for optical CT scanning of gel dosimeters. In this work a rotating mirror, lens pair, laser scanner has been developed for a 10 x 15 cm2 field of view demonstrating a fast 3D single ray-detector optical CT scanner.

  15. Yeast metabolic state identification using micro-fiber optics spectroscopy

    NASA Astrophysics Data System (ADS)

    Silva, J. S.; Castro, C. C.; Vicente, A. A.; Tafulo, P.; Jorge, P. A. S.; Martins, R. C.

    2011-05-01

    Saccharomyces cerevisiae morphology is known to be dependent on the cell physiological state and environmental conditions. On their environment, wild yeasts tend to form complex colonies architectures, such as stress response and pseudohyphal filaments morphologies, far away from the ones found inside bioreactors, where the regular cell cycle is observed under controlled conditions (e.g. budding and flocculating colonies). In this work we explore the feasibility of using micro-fiber optics spectroscopy to classify Saccharomyces cerevisiae S288C colony structures in YPD media, under different growth conditions, such as: i) no alcohol; ii) 1 % (v/v) Ethanol; iii) 1 % (v/v) 1-butanol; iv) 1 % (v/v) Isopropanol; v) 1 % (v/v) Tert-Amyl alcohol (2 Methyl-2-butanol); vi) 0,2 % (v/v) 2-Furaldehyde; vii) 5 % (w/v) 5 (Hydroxymethyl)-furfural; and viii) 1 % (w/v) (-)-Adenosine3', 5'cyclic monophosphate. The microscopy system includes a hyperspectral camera apparatus and a micro fiber (sustained by micro manipulator) optics system for spectroscopy. Results show that micro fiber optics system spectroscopy has the potential for yeasts metabolic state identification once the spectral signatures of colonies differs from each others. This technique associated with others physico-chemical information can benefit the creation of an information system capable of providing extremely detailed information about yeast metabolic state that will aid both scientists and engineers to study and develop new biotechnological products.

  16. A Concept for Zero-Alignment Micro Optical Systems

    SciTech Connect

    DESCOUR, MICHAEL R.; KOLOLUOMA,TERHO; LEVEY,RAVIV; RANTALA,JUHA T.; SHUL,RANDY J.; WARREN,MIAL E.; WILLISON,CHRISTI LEE

    1999-09-16

    We are developing a method of constructing compact, three-dimensional photonics systems consisting of optical elements, e.g., lenses and mirrors, photo-detectors, and light sources, e.g., VCSELS or circular-grating lasers. These optical components, both active and passive, are mounted on a lithographically prepared silicon substrate. We refer to the substrate as a micro-optical table (MOT) in analogy with the macroscopic version routinely used in optics laboratories. The MOT is a zero-alignment, microscopic optical-system concept. The position of each optical element relative to other optical elements on the MOT is determined in the layout of the MOT photomask. Each optical element fits into a slot etched in the silicon MOT. The slots are etched using a high-aspect-ratio silicon etching (HARSE) process. Additional positioning features in each slot's cross-section and complementary features on each optical element permit accurate placement of that element's aperture relative to the MOT substrate. In this paper we present the results of the first fabrication and micro-assembly experiments of a silicon-wafer based MOT. Based on these experiments, estimates of position accuracy are reported. We also report on progress in fabrication of lens elements in a hybrid sol-gel material (HSGM). Diffractive optical elements have been patterned in a 13-micron thick HSGM layer on a 150-micron thick soda-lime glass substrate. The measured ms surface roughness was 20 nm. Finally, we describe modeling of MOT systems using non-sequential ray tracing (NSRT).

  17. Detecting metastasis of gastric carcinoma using high-resolution micro-CT system: in vivo small animal study

    NASA Astrophysics Data System (ADS)

    Liu, Junting; Tian, Jie; Liang, Jimin; Li, Xiangsi; Yang, Xiang; Chen, Xiaofeng; Chen, Yi; Zhou, Yuanfang; Wang, Xiaorui

    2011-03-01

    Immunocytochemical and immunofluorescence staining are used for identifying the characteristics of metastasis in traditional ways. Micro-computed tomography (micro-CT) is a useful tool for monitoring and longitudinal imaging of tumor in small animal in vivo. In present study, we evaluated the feasibility of the detection for metastasis of gastric carcinoma by high-resolution micro-CT system with omnipaque accumulative enhancement method in the organs. Firstly, a high-resolution micro-CT ZKKS-MCT-sharp micro-CT was developed by our research group and Guangzhou Zhongke Kaisheng Medical Technology Co., Ltd. Secondly, several gastric carcinoma models were established through inoculating 2x106 BGC-823 gastric carcinoma cells subcutaneously. Thirdly, micro-CT scanning was performed after accumulative enhancement method of intraperitoneal injection of omnipaque contrast agent containing 360 mg iodine with a concentration of 350 mg I/ml. Finally, we obtained high-resolution anatomical information of the metastasis in vivo in a BALB/c NuNu nude mouse, the 3D tumor architecture is revealed in exquisite detail at about 35 μm spatial resolution. In addition, the accurate shape and volume of the micrometastasis as small as 0.78 mm3 can be calculated with our software. Overall, our data suggest that this imaging approach and system could be used to enhance the understanding of tumor proliferation, metastasis and could be the basis for evaluating anti-tumor therapies.

  18. Pore-Scale X-ray Micro-CT Imaging and Analysis of Oil Shales

    NASA Astrophysics Data System (ADS)

    Saif, T.

    2015-12-01

    The pore structure and the connectivity of the pore space during the pyrolysis of oil shales are important characteristics which determine hydrocarbon flow behaviour and ultimate recovery. We study the effect of temperature on the evolution of pore space and subsequent permeability on five oil shale samples: (1) Vernal Utah United States, (2) El Lajjun Al Karak Jordan, (3) Gladstone Queensland Australia (4) Fushun China and (5) Kimmerdige United Kingdom. Oil Shale cores of 5mm in diameter were pyrolized at 300, 400 and 500 °C. 3D imaging of 5mm diameter core samples was performed at 1μm voxel resolution using X-ray micro computed tomography (CT) and the evolution of the pore structures were characterized. The experimental results indicate that the thermal decomposition of kerogen at high temperatures is a major factor causing micro-scale changes in the internal structure of oil shales. At the early stage of pyrolysis, micron-scale heterogeneous pores were formed and with a further increase in temperature, the pores expanded and became interconnected by fractures. Permeability for each oil shale sample at each temperature was computed by simulation directly on the image voxels and by pore network extraction and simulation. Future work will investigate different samples and pursue insitu micro-CT imaging of oil shale pyrolysis to characterize the time evolution of the pore space.

  19. MicroCT angiography detects vascular formation and regression in skin wound healing.

    PubMed

    Urao, Norifumi; Okonkwo, Uzoagu A; Fang, Milie M; Zhuang, Zhen W; Koh, Timothy J; DiPietro, Luisa A

    2016-07-01

    Properly regulated angiogenesis and arteriogenesis are essential for effective wound healing. Tissue injury induces robust new vessel formation and subsequent vessel maturation, which involves vessel regression and remodeling. Although formation of functional vasculature is essential for healing, alterations in vascular structure over the time course of skin wound healing are not well understood. Here, using high-resolution ex vivo X-ray micro-computed tomography (microCT), we describe the vascular network during healing of skin excisional wounds with highly detailed three-dimensional (3D) reconstructed images and associated quantitative analysis. We found that relative vessel volume, surface area and branching number are significantly decreased in wounds from day 7 to days 14 and 21. Segmentation and skeletonization analysis of selected branches from high-resolution images as small as 2.5μm voxel size show that branching orders are decreased in the wound vessels during healing. In histological analysis, we found that the contrast agent fills mainly arterioles, but not small capillaries nor large veins. In summary, high-resolution microCT revealed dynamic alterations of vessel structures during wound healing. This technique may be useful as a key tool in the study of the formation and regression of wound vessels. PMID:27009591

  20. Development of the 3D volumetric micro-CT scanner for preclinical animals

    NASA Astrophysics Data System (ADS)

    Kim, Kyong-Woo; Kim, Kyu-Gyeom; Kim, Jae-Hee; Min, Jong-Hwan; Lee, Hee-Sin; Lee, Joonwhoan

    2011-06-01

    A high resolution micro computed tomography (micro-CT) system for live small animal imaging has been developed. The system consists of an x-ray source with micro focus spot and high brightness, rotating gantry with a x-ray tube and flat panel detector pair and a stationary and a horizontally positioned small animal bed to achieve a conebeam mode scan. The system is optimized for in vivo small animal imaging and the capability of administering respiratory anesthesia during scanning. The Feldkamp algorithm was adopted in image reconstruction with graphic processing unit (GPU). We evaluated the spatial resolution, image contrast, and uniformity of system using phantom. As the result, the spatial resolution of the system was the 56lp/mm at 10% of the MTF curve, and the radiation dose to the sample was 98mGy. The minimal resolving contrast was found to be less than 46 CT numbers on low-contrast phantom. We present the image test results of the bone and lung, and heart of the live mice. [Figure not available: see fulltext.

  1. A framework for modeling ocular drug transport and flow through the eye using micro-CT

    NASA Astrophysics Data System (ADS)

    Smith, Corey A.; Newson, Timothy A.; Leonard, Kevin C.; Barfett, Joseph; Holdsworth, David W.; Hutnik, Cindy M. L.; Hill, Kathleen A.

    2012-10-01

    This study uses micro-computed tomography (micro-CT) imaging for assessment of concentration and transport mechanisms of ocular drug surrogates following intravitreal injection. Injections of an iodinated contrast agent were administered to enucleated porcine eyes prior to scanning over 192 min. Image analysis was performed using signal profiles and regions of interest that corresponded to specific iodine concentrations. Diffusion coefficients of the injected iodine solutions were calculated using nonlinear regression analysis with a diffusion model. There was a predominantly diffusive component in the movement of the contrast to the back of the eye in the horizontal (sagittal & coronal) directions, with ultimate retinal fate observed after 120 min. The diffusion coefficients were found to have a mean of 4.87 × 10-4 mm2 s-1 and standard deviation of 8.39 × 10-5 mm2 s-1 for 150 mg ml-1 iodine concentration and 6.13 × 10-4 ± 1.83 × 10-4 mm2 s-1 for 37.5 mg ml-1 concentration. However, it should be noted that these coefficients were time dependent and were found to decay as the diffusion front interacted with the retinal wall. A real-time, accurate, non-invasive method of tracking a bolus and its concentration is achieved using a high spatial resolution and fast scanning speed micro-CT system.

  2. Estimation of the firing distance through micro-CT analysis of gunshot wounds.

    PubMed

    Cecchetto, Giovanni; Giraudo, Chiara; Amagliani, Alessandro; Viel, Guido; Fais, Paolo; Cavarzeran, Fabiano; Feltrin, Giampietro; Ferrara, Santo Davide; Montisci, Massimo

    2011-03-01

    Estimation of the firing range is often critical for reconstructing gunshot fatalities, where the main measurable evidence is the gunshot residue (GSR). In the present study intermediate-range gunshot wounds have been analysed by means of a micro-computed tomography (micro-CT) coupled to an image analysis software in order to quantify the powder particles and to determine the firing distance. A total of 50 shootings were performed on skin sections obtained from human legs surgically amputated for medical reasons. For each tested distance (5, 15, 23, 30 and 40 cm), firing was carried out perpendicularly at the samples using a 7.65-mm pistol loaded with jacketed bullets. Uninjured skin sections were used as controls. By increasing the firing distance, micro-CT analysis demonstrated a clear decreasing trend in the mean GSR percentage, particularly for shots fired from more than 15 cm. For distances under 23 cm, the powder particles were concentrated on the epidermis and dermis around the hole, and inside the cavity; while, at greater distances, they were deposited only on the skin surface. Statistical analysis showed a nonlinear relationship between the amount of GSR deposits and the firing range, well explained by a Gaussian-like function. The proposed method allowed a good discrimination for all the tested distances, proving to be an objective, rapid and inexpensive tool for estimating the firing range in intermediate-range gunshot wounds. PMID:21120514

  3. In vivo micro-CT analysis of bone remodeling in a rat calvarial defect model

    NASA Astrophysics Data System (ADS)

    Umoh, Joseph U.; Sampaio, Arthur V.; Welch, Ian; Pitelka, Vasek; Goldberg, Harvey A.; Underhill, T. Michael; Holdsworth, David W.

    2009-04-01

    The rodent calvarial defect model is commonly used to investigate bone regeneration and wound healing. This study presents a micro-computed tomography (micro-CT) methodology for measuring the bone mineral content (BMC) in a rat calvarial defect and validates it by estimating its precision error. Two defect models were implemented. A single 6 mm diameter defect was created in 20 rats, which were imaged in vivo for longitudinal experiments. Three 5 mm diameter defects were created in three additional rats, which were repeatedly imaged ex vivo to determine precision. Four control rats and four rats treated with bone morphogenetic protein were imaged at 3, 6, 9 and 12 weeks post-surgery. Scan parameters were 80 kVp, 0.45 mA and 180 mAs. Images were reconstructed with an isotropic resolution of 45 µm. At 6 weeks, the BMC in control animals (4.37 ± 0.66 mg) was significantly lower (p < 0.05) than that in treated rats (11.29 ± 1.01 mg). Linear regression between the BMC and bone fractional area, from 20 rats, showed a strong correlation (r2 = 0.70, p < 0.0001), indicating that the BMC can be used, in place of previous destructive analysis techniques, to characterize bone growth. The high precision (2.5%) of the micro-CT methodology indicates its utility in detecting small BMC changes in animals.

  4. Analysis of optical route in a micro high-speed magneto-optic switch

    NASA Astrophysics Data System (ADS)

    Weng, Zihua; Yang, Guoguang; Huang, Yuanqing; Chen, Zhimin; Zhu, Yun; Wu, Jinming; Lin, Shufen; Mo, Weiping

    2005-02-01

    A novel micro high-speed 2x2 magneto-optic switch and its optical route, which is used in high-speed all-optical communication network, is designed and analyzed in this paper. The study of micro high-speed magneto-optic switch mainly involves the optical route and high-speed control technique design. The optical route design covers optical route design of polarization in optical switch, the performance analysis and material selection of magneto-optic crystal and magnetic path design in Faraday rotator. The research of high-speed control technique involves the study of nanosecond pulse generator, high-speed magnetic field and its control technique etc. High-speed current transients from nanosecond pulse generator are used to switch the magnetization of the magneto-optic crystal, which propagates a 1550nm optical beam. The optical route design schemes and electronic circuits of high-speed control technique are both simulated on computer and test by the experiments respectively. The experiment results state that the nanosecond pulse generator can output the pulse with rising edge time 3~35ns, voltage amplitude 10~90V and pulse width 10~100ns. Under the control of CPU singlechip, the optical beam can be stably switched and the switching time is less than 1μs currently.

  5. Micro optical diffusion sensor using a comb-driven micro Fresnel mirror.

    PubMed

    Matoba, Yoshiaki; Taguchi, Yoshihiro; Nagasaka, Yuji

    2015-01-12

    We have developed a novel micro optical diffusion sensor (MODS) with a newly proposed comb-driven-micro Fresnel mirror (CD-MFM) scanner to detect structural changes in biological samples. By controlling the fringe spacing of the excitation laser beam, we can tune the decay time to obtain quick and precise measurements. In this study, the pre-tilted mirror is rotated by vertical comb-driven actuators; the resulting change in the mirror angle alters the fringe spacing. The validity of the proposed mirror scanner is confirmed in simulations and in an experiment using a fabricated prototype device. PMID:25835693

  6. Micro-CT Imaging of Tumor Angiogenesis: Quantitative Measures Describing Micromorphology and Vascularization

    PubMed Central

    Ehling, Josef; Theek, Benjamin; Gremse, Felix; Baetke, Sarah; Möckel, Diana; Maynard, Juliana; Ricketts, Sally-Ann; Grüll, Holger; Neeman, Michal; Knuechel, Ruth; Lederle, Wiltrud; Kiessling, Fabian; Lammers, Twan

    2014-01-01

    Angiogenesis is a hallmark of cancer, and its noninvasive visualization and quantification are key factors for facilitating translational anticancer research. Using four tumor models characterized by different degrees of aggressiveness and angiogenesis, we show that the combination of functional in vivo and anatomical ex vivo X-ray micro-computed tomography (μCT) allows highly accurate quantification of relative blood volume (rBV) and highly detailed three-dimensional analysis of the vascular network in tumors. Depending on the tumor model, rBV values determined using in vivo μCT ranged from 2.6% to 6.0%, and corresponds well with the values assessed using IHC. Using ultra-high-resolution ex vivo μCT, blood vessels as small as 3.4 mm and vessel branches up to the seventh order could be visualized, enabling a highly detailed and quantitative analysis of the three-dimensional micromorphology of tumor vessels. Microvascular parameters such as vessel size and vessel branching correlated very well with tumor aggressiveness and angiogenesis. In rapidly growing and highly angiogenic A431 tumors, the majority of vessels were small and branched only once or twice, whereas in slowly growing A549 tumors, the vessels were much larger and branched four to seven times. Thus, we consider that combining highly accurate functional with highly detailed anatomical μCT is a useful tool for facilitating high-throughput, quantitative, and translational (anti-) angiogenesis and antiangiogenesis research. PMID:24262753

  7. Estimating mineral changes in enamel formation by ashing/BSE and microCT.

    PubMed

    Schmitz, J E; Teepe, J D; Hu, Y; Smith, C E; Fajardo, R J; Chun, Y-H P

    2014-03-01

    Enamel formation produces the most highly mineralized tissue in the human body. The growth of enamel crystallites is assisted by enamel proteins and proteinases. As enamel formation progresses from secretory to maturation stages, the composition of the matrix with its mineral and non-mineral components dynamically changes in an inverse fashion. We hypothesized that appropriately calibrated micro-computed tomography (µCT) technology is suitable to estimate the mineral content (weight and/or density) and volume comparable in accuracy with that for directly weighed and sectioned enamel. Different sets of mouse mandibular incisors of C57BL/6 mice were used for dissections and µCT reconstructions. Calibration phantoms corresponding to the range of enamel mineral densities were used. Secretory-stage enamel contained little mineral and was consequently too poor in contrast for enamel volumes to be accurately estimated by µCT. Maturation-stage enamel, however, showed remarkable correspondence for total mineral content per volume where comparisons were possible between and among the different analytical techniques used. The main advantages of the µCT approach are that it is non-destructive, time-efficient, and can monitor changes in mineral content of the most mature enamel, which is too physically hard to dissect away from the tooth. PMID:24470541

  8. A Micro-Computed Tomography Technique to Study the Quality of Fibre Optics Embedded in Composite Materials

    PubMed Central

    Chiesura, Gabriele; Luyckx, Geert; Voet, Eli; Lammens, Nicolas; Van Paepegem, Wim; Degrieck, Joris; Dierick, Manuel; Van Hoorebeke, Luc; Vanderniepen, Pieter; Sulejmani, Sanne; Sonnenfeld, Camille; Geernaert, Thomas; Berghmans, Francis

    2015-01-01

    Quality of embedment of optical fibre sensors in carbon fibre-reinforced polymers plays an important role in the resultant properties of the composite, as well as for the correct monitoring of the structure. Therefore, availability of a tool able to check the optical fibre sensor-composite interaction becomes essential. High-resolution 3D X-ray Micro-Computed Tomography, or Micro-CT, is a relatively new non-destructive inspection technique which enables investigations of the internal structure of a sample without actually compromising its integrity. In this work the feasibility of inspecting the position, the orientation and, more generally, the quality of the embedment of an optical fibre sensor in a carbon fibre reinforced laminate at unit cell level have been proven. PMID:25961383

  9. Optically driven Archimedes micro-screws for micropump application.

    PubMed

    Lin, Chih-Lang; Vitrant, Guy; Bouriau, Michel; Casalegno, Roger; Baldeck, Patrice L

    2011-04-25

    Archimedes micro-screws have been fabricated by three-dimensional two-photon polymerization using a Nd:YAG Q-switched microchip laser at 532nm. Due to their small sizes they can be easily manipulated, and made to rotate using low power optical tweezers. Rotation rates up to 40 Hz are obtained with a laser power of 200 mW, i.e. 0.2 Hz/mW. A photo-driven micropump action in a microfluidic channel is demonstrated with a non-optimized flow rate of 6 pL/min. The optofluidic properties of such type of Archimedes micro-screws are quantitatively described by the conservation of momentum that occurs when the laser photons are reflected on the helical micro-screw surface. PMID:21643076

  10. A novel technique for the contrast-enhanced microCT imaging of murine intervertebral discs.

    PubMed

    Lin, Kevin H; Wu, Qi; Leib, Daniel J; Tang, Simon Y

    2016-10-01

    Disc degeneration is one of the leading factors that contribute to low back pain. Thus, the further understanding of the mechanisms contributing to degeneration of the intervertebral disc degeneration is critical for the development of therapies and strategies for treating low back pain. Rodent models are attractive for conducting mechanistic studies particularly because of the availability of genetically modified animals. However, current imaging technologies such as magnetic resonance imaging, do not have the ability to resolve spatial features at the tens- to single- micrometer scale. We propose here a contrast-enhanced microCT technique to conduct high-resolution imaging of the rodent intervertebral discs at 10µm spatial resolution. Based on the iodinated-hydrophilic contrast agent Ioversol, we are able to conduct high resolution imaging on rat and mouse intervertebral discs. Leveraging the hydrophilic characteristic of the contrast agent, we are able to discriminate the annulus fibrosus from the water-rich nucleus pulposus. Moreover, this technique allows for the quantitative measurement of disc morphologies and volumes, and we demonstrate the versatility of this technique on cultured live intervertebral discs. Coupled with our semi-automated segmentation technique, we are able to quantify the intervertebral disc volumes with a high degree of reproducibility. The contrast-enhanced microCT images were qualitatively and quantitatively indistinguishable from the traditional histological assessment of the same sample. Furthermore, stereological measures compared well between histology and microCT images. Taken together, the results reveal that rat and mouse intervertebral discs can be imaged longitudinally in vitro at high resolutions, with no adverse effects on viability and features of the intervertebral disc. PMID:27341292

  11. Bronchial circulation angiogenesis in the rat quantified with SPECT and micro-CT

    PubMed Central

    Wietholt, Christian; Roerig, David L.; Gordon, John B.; Haworth, Steven T.; Molthen, Robert C.; Clough, Anne V.

    2009-01-01

    Introduction As pulmonary artery obstruction results in proliferation of the bronchial circulation in a variety of species, we investigated this angiogenic response using single photon emission computed tomography (SPECT) and micro-CT. Materials and methods After surgical ligation of the left pulmonary artery of rats, they were imaged at 10, 20, or 40 days post-ligation. Before imaging, technetium-labeled macroaggregated albumin (99mTc MAA) was injected into the aortic arch (IA) labeling the systemic circulation. SPECT/micro-CT imaging was performed, the image volumes were registered, and activity in the left lung via the bronchial circulation was used as a marker of bronchial blood flow. To calibrate and to verify successful ligation, 99mTc MAA was subsequently injected into the left femoral vein (IV), resulting in accumulation within the pulmonary circulation. The rats were reimaged, and the ratio of the IA to the IV measurements reflected the fraction of cardiac output (CO) to the left lung via the bronchial circulation. Control and sham-operated rats were studied similarly. Results The left lung bronchial circulation of the control group was 2.5% of CO. The sham-operated rats showed no significant difference from the control. However, 20 and 40 days post-ligation, the bronchial circulation blood flow had increased to 7.9 and 13.9%, respectively, of CO. Excised lungs examined after barium filling of the systemic vasculature confirmed neovascularization as evidenced by tortuous vessels arising from the mediastinum and bronchial circulation. Conclusion Thus, we conclude that SPECT/micro-CT imaging is a valuable methodology for monitoring angiogenesis in the lung and, potentially, for evaluating the effects of pro- or anti-angiogenic treatments using a similar approach. PMID:18247028

  12. Investigating the effect of longitudinal micro-CT imaging on tumour growth in mice

    NASA Astrophysics Data System (ADS)

    Foster, W. Kyle; Ford, Nancy L.

    2011-01-01

    The aim of this study is to determine the impact of longitudinal micro-CT imaging on the growth of B16F1 tumours in C57BL/6 mice. Sixty mice received 2 × 105 B16F1 cells subcutaneously in the hind flank and were divided into control (no scan), 'low-dose' (80 kVp, 70 mA, 8 s, 0.07 Gy), 'medium-dose' (80 kVp, 50 mA, 30 s, 0.18 Gy) and 'high-dose' (80 kVp, 50 mA, 50 s, 0.30 Gy) groups. All imaging was performed on a fast volumetric micro-CT scanner (GE Locus Ultra, London, Canada). Each mouse was imaged on days 4, 8, 12 and 16. After the final imaging session, each tumour was excised, weighed on an electronic balance, imaged to obtain the final tumour volume and processed for histology. Final tumour volume was used to evaluate the impact of longitudinal micro-CT imaging on the tumour growth. An ANOVA indicated no statistically significant difference in tumour volume (p = 0.331, α = β = 0.1) when discriminating against a treatment-sized effect. Histological samples revealed no observable differences in apoptosis or cell proliferation. We conclude that four imaging sessions, using standard protocols, over the course of 16 days did not cause significant changes in final tumour volume for B16F1 tumours in female C57BL/6 mice (ANOVA, α = β = 0.1, p = 0.331).

  13. Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization

    NASA Astrophysics Data System (ADS)

    Clark, Darin; Badea, Alexandra; Liu, Yilin; Johnson, G. Allan; Badea, Cristian T.

    2012-10-01

    Micro-CT can play an important role in preclinical studies of cardiovascular disease because of its high spatial and temporal resolution. Quantitative analysis of 4D cardiac images requires segmentation of the cardiac chambers at each time point, an extremely time consuming process if done manually. To improve throughput this study proposes a pipeline for registration-based segmentation and functional analysis of 4D cardiac micro-CT data in the mouse. Following optimization and validation using simulations, the pipeline was applied to in vivo cardiac micro-CT data corresponding to ten cardiac phases acquired in C57BL/6 mice (n = 5). After edge-preserving smoothing with a novel adaptation of 4D bilateral filtration, one phase within each cardiac sequence was manually segmented. Deformable registration was used to propagate these labels to all other cardiac phases for segmentation. The volumes of each cardiac chamber were calculated and used to derive stroke volume, ejection fraction, cardiac output, and cardiac index. Dice coefficients and volume accuracies were used to compare manual segmentations of two additional phases with their corresponding propagated labels. Both measures were, on average, >0.90 for the left ventricle and >0.80 for the myocardium, the right ventricle, and the right atrium, consistent with trends in inter- and intra-segmenter variability. Segmentation of the left atrium was less reliable. On average, the functional metrics of interest were underestimated by 6.76% or more due to systematic label propagation errors around atrioventricular valves; however, execution of the pipeline was 80% faster than performing analogous manual segmentation of each phase.

  14. MicroCT with energy-resolved photon-counting detectors

    NASA Astrophysics Data System (ADS)

    Wang, X.; Meier, D.; Mikkelsen, S.; Maehlum, G. E.; Wagenaar, D. J.; Tsui, B. M. W.; Patt, B. E.; Frey, E. C.

    2011-05-01

    The goal of this paper was to investigate the benefits that could be realistically achieved on a microCT imaging system with an energy-resolved photon-counting x-ray detector. To this end, we built and evaluated a prototype microCT system based on such a detector. The detector is based on cadmium telluride (CdTe) radiation sensors and application-specific integrated circuit (ASIC) readouts. Each detector pixel can simultaneously count x-ray photons above six energy thresholds, providing the capability for energy-selective x-ray imaging. We tested the spectroscopic performance of the system using polychromatic x-ray radiation and various filtering materials with K-absorption edges. Tomographic images were then acquired of a cylindrical PMMA phantom containing holes filled with various materials. Results were also compared with those acquired using an intensity-integrating x-ray detector and single-energy (i.e. non-energy-selective) CT. This paper describes the functionality and performance of the system, and presents preliminary spectroscopic and tomographic results. The spectroscopic experiments showed that the energy-resolved photon-counting detector was capable of measuring energy spectra from polychromatic sources like a standard x-ray tube, and resolving absorption edges present in the energy range used for imaging. However, the spectral quality was degraded by spectral distortions resulting from degrading factors, including finite energy resolution and charge sharing. We developed a simple charge-sharing model to reproduce these distortions. The tomographic experiments showed that the availability of multiple energy thresholds in the photon-counting detector allowed us to simultaneously measure target-to-background contrasts in different energy ranges. Compared with single-energy CT with an integrating detector, this feature was especially useful to improve differentiation of materials with different attenuation coefficient energy dependences.

  15. MicroCT with energy-resolved photon-counting detectors.

    PubMed

    Wang, X; Meier, D; Mikkelsen, S; Maehlum, G E; Wagenaar, D J; Tsui, B M W; Patt, B E; Frey, E C

    2011-05-01

    The goal of this paper was to investigate the benefits that could be realistically achieved on a microCT imaging system with an energy-resolved photon-counting x-ray detector. To this end, we built and evaluated a prototype microCT system based on such a detector. The detector is based on cadmium telluride (CdTe) radiation sensors and application-specific integrated circuit (ASIC) readouts. Each detector pixel can simultaneously count x-ray photons above six energy thresholds, providing the capability for energy-selective x-ray imaging. We tested the spectroscopic performance of the system using polychromatic x-ray radiation and various filtering materials with K-absorption edges. Tomographic images were then acquired of a cylindrical PMMA phantom containing holes filled with various materials. Results were also compared with those acquired using an intensity-integrating x-ray detector and single-energy (i.e. non-energy-selective) CT. This paper describes the functionality and performance of the system, and presents preliminary spectroscopic and tomographic results. The spectroscopic experiments showed that the energy-resolved photon-counting detector was capable of measuring energy spectra from polychromatic sources like a standard x-ray tube, and resolving absorption edges present in the energy range used for imaging. However, the spectral quality was degraded by spectral distortions resulting from degrading factors, including finite energy resolution and charge sharing. We developed a simple charge-sharing model to reproduce these distortions. The tomographic experiments showed that the availability of multiple energy thresholds in the photon-counting detector allowed us to simultaneously measure target-to-background contrasts in different energy ranges. Compared with single-energy CT with an integrating detector, this feature was especially useful to improve differentiation of materials with different attenuation coefficient energy dependences. PMID:21464527

  16. Construct damage and loosening around glenoid implants: A longitudinal micro-CT study of five cadaver specimens.

    PubMed

    Lewis, Gregory S; Brenza, Jacob B; Paul, Emmanuel M; Armstrong, April D

    2016-06-01

    The evolution of failure of bone and cement leading to loosening of glenoid components following shoulder arthroplasty is not well understood. The purpose of this study was to identify and visualize potential mechanisms of mechanical failure within cadavers, cemented with two types of components, and subject to cyclic loading. Five glenoid cadaver bones were implanted with either a three-pegged polyethylene component, or prototype posteriorly augmented component which addresses posterior bone loss. Specimens were loaded by constant glenohumeral compression combined with cyclic anterior-posterior displacement of the humeral head relative to the glenoid. At six time points across 100,000 cycles, implant loosening micromotions were optically measured, and specimens were imaged by micro-computed tomography. Scans were 3D registered and inspected for crack initiation and progression, and micro-CT based time-lapse movies were created. Cement cracking initiated at stress concentrations and progressed with additional cyclic loading. Failure planes within trabecular bone and the bone-cement interface were identified in four of the five specimens. Implant subsidence increased to greater than 1.0 mm in two specimens. Cemented glenoid structural failure can occur within the cement, along planes of trabecular bone, or at the bone cement interface. © 2015 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 34:1053-1060, 2016. PMID:26630205

  17. Wafer-scale micro-optics replication technology

    NASA Astrophysics Data System (ADS)

    Rossi, Markus; Rudmann, Hartmut; Marty, Brigitte; Maciossek, Andreas

    2003-11-01

    For many high-volume applications of micro-optical elements and systems the most cost-effective fabrication technology is replication in polymer materials with techniques such as UV embossing, hot embossing, and injection molding. Replication significantly reduces the cost in volume production in comparison to silicon-based etched components. However, the temperature and humidity stability of most commercial polymers is not suitable for the application of replicated elements in areas such as telecom or datacom. A process based on UV-replication in chemically durable polymers has been developed. Technologies for all fabrication steps from mastering over tooling to replication on wafer-scale, post-processing and characterization are described. We present results of various projects with double-sided micro-optics for telecom/datacom and various sensor applications.

  18. Diffractive micro-optical element with nonpoint response

    NASA Astrophysics Data System (ADS)

    Soifer, Victor A.; Golub, Michael A.

    1993-01-01

    Common-use diffractive lenses have microrelief zones in the form of simple rings that provide only an optical power but do not contain any image information. They have a point-image response under point-source illumination. We must use a more complicated non-point response to focus a light beam into different light marks, letter-type images as well as for optical pattern recognition. The current presentation describes computer generation of diffractive micro- optical elements with complicated curvilinear zones of a regular piecewise-smooth structure and grey-level or staircase phase microrelief. The manufacture of non-point response elements uses the steps of phase-transfer calculation and orthogonal-scan masks generation or lithographic glass etching. Ray-tracing method is shown to be applicable in this task. Several working samples of focusing optical elements generated by computer and photolithography are presented. Using the experimental results we discuss here such applications as laser branding.

  19. Raman Spectroscopy of Optically Trapped Single Biological Micro-Particles

    PubMed Central

    Redding, Brandon; Schwab, Mark J.; Pan, Yong-le

    2015-01-01

    The combination of optical trapping with Raman spectroscopy provides a powerful method for the study, characterization, and identification of biological micro-particles. In essence, optical trapping helps to overcome the limitation imposed by the relative inefficiency of the Raman scattering process. This allows Raman spectroscopy to be applied to individual biological particles in air and in liquid, providing the potential for particle identification with high specificity, longitudinal studies of changes in particle composition, and characterization of the heterogeneity of individual particles in a population. In this review, we introduce the techniques used to integrate Raman spectroscopy with optical trapping in order to study individual biological particles in liquid and air. We then provide an overview of some of the most promising applications of this technique, highlighting the unique types of measurements enabled by the combination of Raman spectroscopy with optical trapping. Finally, we present a brief discussion of future research directions in the field. PMID:26247952

  20. First 3D reconstruction of the rhizocephalan root system using MicroCT

    NASA Astrophysics Data System (ADS)

    Noever, Christoph; Keiler, Jonas; Glenner, Henrik

    2016-07-01

    Parasitic barnacles (Cirripedia: Rhizocephala) are highly specialized parasites of crustaceans. Instead of an alimentary tract for feeding they utilize a system of roots, which infiltrates the body of their hosts to absorb nutrients. Using X-ray micro computer tomography (MicroCT) and computer-aided 3D-reconstruction, we document the spatial organization of this root system, the interna, inside the intact host and also demonstrate its use for morphological examinations of the parasites reproductive part, the externa. This is the first 3D visualization of the unique root system of the Rhizocephala in situ, showing how it is related to the inner organs of the host. We investigated the interna from different parasitic barnacles of the family Peltogastridae, which are parasitic on anomuran crustaceans. Rhizocephalan parasites of pagurid hermit crabs and lithodid crabs were analysed in this study.

  1. Micro-optical elements for optical wireless applications

    NASA Astrophysics Data System (ADS)

    Jin, Xian; Guerrero, Daniel; Klukas, Richard; Holzman, Jonathan F.

    2013-09-01

    Customized high-contact-angle microlenses are presented for optical wireless communication (OWC) and optical wireless location (OWL) applications. These microlenses are fabricated by way of an electro-dispensing technique to establish wide field-of-views (FOVs). Each microlens is formed from dispensed UV-curable polymer with pressurecontrol defining the microlens volume and a voltage on the metal needle tip defining the microlens shape (by way of electrowetting). UV curing is then applied. Microlenses with FOVs up to 90° are fabricated for high-density integration above a CMOS imaging sensor for wide-FOV operation in emerging OWC and OWL applications. Both theoretical raytracing analyses and experimental imaging results are presented with good agreement.

  2. Combined optical resolution photoacoustic and fluorescence micro-endoscopy

    NASA Astrophysics Data System (ADS)

    Shao, Peng; Shi, Wei; Hajireza, Parsin; Zemp, Roger J.

    2012-02-01

    We present a new micro-endoscopy system combining real-time C-scan optical-resolution photoacoustic micro-endoscopy (OR-PAME), and a high-resolution fluorescence micro-endoscopy system for visualizing fluorescently labeled cellular components and optically absorbing microvasculature simultaneously. With a diode-pumped 532-nm fiber laser, the OR-PAM sub-system is capable of imaging with a resolution of ~ 7μm. The fluorescence sub-system consists of a diode laser with 445 nm-centered emissions as the light source, an objective lens and a CCD camera. Proflavine, a FDA approved drug for human use, is used as the fluorescent contrast agent by topical application. The fluorescence system does not require any mechanical scanning. The scanning laser and the diode laser light source share the same light path within an optical fiber bundle containing 30,000 individual single mode fibers. The absorption of Proflavine at 532 nm is low, which mitigates absorption bleaching of the contrast agent by the photoacoustic excitation source. We demonstrate imaging in live murine models. The system is able to provide cellular morphology with cellular resolution co-registered with the structural and functional information given by OR-PAM. Therefore, the system has the potential to serve as a virtual biopsy technique, helping researchers and clinicians visualize angiogenesis, effects of anti-cancer drugs on both cells and the microcirculation, as well as aid in the study of other diseases.

  3. Micro-optical imaging concepts for an intraocular vision aid

    NASA Astrophysics Data System (ADS)

    Eix, Ilos; Stork, Wilhelm; Muller-Glaser, Klaus D.

    2004-03-01

    About 10 million people around the world are suffering from blindness, where the path of light is disturbed due to an opaque, irreversible damaged, and inoperable cornea. Although vision is not given to this group of population, the retina is still intact. To date, there is no artificial implant which is able to replace the natural cornea. The work presented here describes an approach to build and implant a micro-optical and microelectronic system to be used as an intraocular vision aid. By overcoming the disturbed light path, it yields to an improved visual acuity of the patient. The main aspect of this bio-mimetic system is to transfer information representing the patient's field of view to the retina. An image of the field of view is captured in real-time outside the eye. After employing data processing, it is wireless transferred to the implanted part of the vision aid. From there, the information emerging from a micro display is imaged to the retina via a micro-optical system. The limited display resolution available inside the eye and the limited dimensions of the eyeball build the constrains of the optical system. A combination of a spatial light modulator together with an imaging lens system realizes intelligent spatial information distribution schemes onto the retina. This ensures a high outcome of visual acuity in the central region of the retina. Various retinal acuities can be realized. The employment of in-vivo adjustment mechanisms of the focal plane is discussed.

  4. A registration-based segmentation method with application to adiposity analysis of mice microCT images

    NASA Astrophysics Data System (ADS)

    Bai, Bing; Joshi, Anand; Brandhorst, Sebastian; Longo, Valter D.; Conti, Peter S.; Leahy, Richard M.

    2014-04-01

    Obesity is a global health problem, particularly in the U.S. where one third of adults are obese. A reliable and accurate method of quantifying obesity is necessary. Visceral adipose tissue (VAT) and subcutaneous adipose tissue (SAT) are two measures of obesity that reflect different associated health risks, but accurate measurements in humans or rodent models are difficult. In this paper we present an automatic, registration-based segmentation method for mouse adiposity studies using microCT images. We co-register the subject CT image and a mouse CT atlas. Our method is based on surface matching of the microCT image and an atlas. Surface-based elastic volume warping is used to match the internal anatomy. We acquired a whole body scan of a C57BL6/J mouse injected with contrast agent using microCT and created a whole body mouse atlas by manually delineate the boundaries of the mouse and major organs. For method verification we scanned a C57BL6/J mouse from the base of the skull to the distal tibia. We registered the obtained mouse CT image to our atlas. Preliminary results show that we can warp the atlas image to match the posture and shape of the subject CT image, which has significant differences from the atlas. We plan to use this software tool in longitudinal obesity studies using mouse models.

  5. Nanoscale logic operation in optically manipulated micro-droplets

    NASA Astrophysics Data System (ADS)

    Ogura, Yusuke; Nishimura, Takahiro; Tanida, Jun

    2010-08-01

    Logic gates consisting of DNA molecules are useful for direct processing of information that relates to biomolecules including DNA at nanoscale. This study is aimed at demonstrating operation of the DNA logic gates by optical manipulation of micro-droplets that contain DNA to show potential of photonics techniques in realizing nanoscale computing. Connections of different DNA logic gates are reconfigurable owing to flexibility in manipulating the micro-droplets. The method is effective in, for example, implementing logic operations in limited-volumes at multiple positions in parallel, enhancing an operation rate, and decreasing sample consumption, and it can be a promising technique applicable to photonic DNA computing. We used a two-input and one-output AND or OR gate consisting of DNA in experiments. The individual inputs, A and B, were encoded into different DNA molecules, I1 and I2, and the output was obtained from a fluorescence signal. Input A (B) is 1 when DNA I1 (I2) exists, and 0 when the DNA does not exist. Microdroplets were made by mixing DNA solution, acetophenone as solvent, and sorbitan monooleate as surfactant. For AND/OR operation, two micro-droplets, one of which contained input-DNAs and the other contained AND/OR logic gates, were optically manipulated to be in contact each other; then the micro-droplets coalesced and the operation started. Experimental results show that expected fluorescence intensities are obtained as the output for all possible input values, and logic operation can be implemented successfully in optically manipulated microdroplets.

  6. Ex vivo micro-CT imaging of murine brain models using non-ionic iodinated contrast

    NASA Astrophysics Data System (ADS)

    Salas Bautista, N.; Martínez-Dávalos, A.; Rodríguez-Villafuerte, M.; Murrieta-Rodríguez, T.; Manjarrez-Marmolejo, J.; Franco-Pérez, J.; Calvillo-Velasco, M. E.

    2014-11-01

    Preclinical investigation of brain tumors is frequently carried out by means of intracranial implantation of brain tumor xenografts or allografts, with subsequent analysis of tumor growth using conventional histopathology. However, very little has been reported on the use contrast-enhanced techniques in micro-CT imaging for the study of malignant brain tumors in small animal models. The aim of this study has been to test a protocol for ex vivo imaging of murine brain models of glioblastoma multiforme (GBM) after treatment with non-ionic iodinated solution, using an in-house developed laboratory micro-CT. We have found that the best compromise between acquisition time and image quality is obtained using a 50 kVp, 0.5 mAs, 1° angular step on a 360 degree orbit acquisition protocol, with 70 μm reconstructed voxel size using the Feldkamp algorithm. With this parameters up to 4 murine brains can be scanned in tandem in less than 15 minutes. Image segmentation and analysis of three sample brains allowed identifying tumor volumes as small as 0.4 mm3.

  7. Optimizing synchrotron microCT for high-throughput phenotyping of zebrafish

    NASA Astrophysics Data System (ADS)

    La Rivière, Patrick J.; Clark, Darin; Rojek, Alexandra; Vargas, Phillip; Xiao, Xianghui; DeCarlo, Francesco; Kindlmann, Gordon; Cheng, Keith

    2010-09-01

    We are creating a state-of-the-art 2D and 3D imaging atlas of zebrafish development. The atlas employs both 2D histology slides and 3D benchtop and synchrotron micro CT results. Through this atlas, we expect to document normal and abnormal organogenesis, to reveal new levels of structural detail, and to advance image informatics as a form of systems biology. The zebrafish has become a widely used model organism in biological and biomedical research for studies of vertebrate development and gene function. In this work, we will report on efforts to optimize synchrotron microCT imaging parameters for zebrafish at crucial developmental stages. The aim of these studies is to establish protocols for high-throughput phenotyping of normal, mutant and diseased zebrafish. We have developed staining and embedding protocols using different heavy metal stains (osmium tetroxide and uranyl acetate) and different embedding media (Embed 812 and glycol methacrylate). We have explored the use of edge subtraction and multi-energy techniques for contrast enhancement and we have examined the use of different sample-detector distances with unstained samples to explore and optimize phase-contrast enhancement effects. We will report principally on our efforts to optimize energy choice for single- and multi-energy studies as well as our efforts to optimize the degree of phase contrast enhancement.

  8. Microstructure Characterization by Means of X-ray Micro-CT and Nanoindentation Measurements

    NASA Astrophysics Data System (ADS)

    Rajczakowska, Magdalena; Stefaniuk, Damian; Łydżba, Dariusz

    2015-03-01

    The aim of this paper is to present an example of the material microstructure characterization with the use of X-ray micro-CT and nanoindentation measurements. Firstly, the current scope of application of the aforementioned techniques is provided within different fields of science. Then, background of each of the methods is presented. The methodology of X-ray micro-CT is described with the emphasis on the Beer's law formulation. In addition, the basics of the nanoindentation technique are outlined and major formulas for the hardness and Young's modulus calculation are given. Finally, example results for a concrete sample are presented. The microstructure of the selected material is firstly characterized in terms of geometry using the results from the microtomograhy measurements, e.g., porosity and attenuation profiles, pore and aggregate size distribution, shape factor of pores, etc. Next, the results of the nanoindentation tests are provided, namely the hardness and Young's modulus versus the height of the sample. The influence of the number of tests and statistical analysis on the final results is underlined.

  9. Angiogenesis in tissue-engineered nerves evaluated objectively using MICROFIL perfusion and micro-CT scanning

    PubMed Central

    Wang, Hong-kui; Wang, Ya-xian; Xue, Cheng-bin; Li, Zhen-mei-yu; Huang, Jing; Zhao, Ya-hong; Yang, Yu-min; Gu, Xiao-song

    2016-01-01

    Angiogenesis is a key process in regenerative medicine generally, as well as in the specific field of nerve regeneration. However, no convenient and objective method for evaluating the angiogenesis of tissue-engineered nerves has been reported. In this study, tissue-engineered nerves were constructed in vitro using Schwann cells differentiated from rat skin-derived precursors as supporting cells and chitosan nerve conduits combined with silk fibroin fibers as scaffolds to bridge 10-mm sciatic nerve defects in rats. Four weeks after surgery, three-dimensional blood vessel reconstructions were made through MICROFIL perfusion and micro-CT scanning, and parameter analysis of the tissue-engineered nerves was performed. New blood vessels grew into the tissue-engineered nerves from three main directions: the proximal end, the distal end, and the middle. The parameter analysis of the three-dimensional blood vessel images yielded several parameters, including the number, diameter, connection, and spatial distribution of blood vessels. The new blood vessels were mainly capillaries and microvessels, with diameters ranging from 9 to 301 μm. The blood vessels with diameters from 27 to 155 μm accounted for 82.84% of the new vessels. The microvessels in the tissue-engineered nerves implanted in vivo were relatively well-identified using the MICROFIL perfusion and micro-CT scanning method, which allows the evaluation and comparison of differences and changes of angiogenesis in tissue-engineered nerves implanted in vivo. PMID:26981108

  10. Submicrometer structure of sea urchin tooth via remote synchrotron microCT imaging

    NASA Astrophysics Data System (ADS)

    Stock, Stuart R.; Rack, Alexander

    2014-09-01

    Remote electron microscopy sessions are featured at a number of imaging centers. Similarly, many synchrotron light sources offer routine "mail-in" crystallography and powder diffractometry. At imaging beam lines, small numbers of (preliminary) scans are sometimes performed by staff, in the absence of the investigator, to demonstrate feasibility of the proposed study or as an industrial service. In the 1990s, one of us (SRS) participated in processing experiments where samples were couriered between Georgia Tech and SSRL and synchrotron microCT followed the spatial distribution of densification. Here, the authors report results of remote microCT experiments, i.e., where the investigator who knows the sample interacts via the web with the beam line scientist operating the apparatus and provides real-time feedback on where to scan based upon radiographs and on the most recent reconstructions. Local tomography imaged sea urchin teeth with 350 nm isotropic volume element (voxel) at beam line ID-19, ESRF. Sea urchin teeth form by growing parallel plates of high Mg calcite, each of which is 2-5 μm away from its neighbors, and very high Mg calcite columns later link the plates. The remote imaging session focused on tooth positions where the columns were just forming, and column shapes and dimensions were measured, something which has previously only been done with destructive sample preparation and scanning electron microscopy. The experiments were successful despite a separation of 4,400 miles and seven time zones.

  11. In Vivo MicroCT Monitoring of Osteomyelitis in a Rat Model

    PubMed Central

    Stadelmann, Vincent A.; Potapova, Inga; Camenisch, Karin; Nehrbass, Dirk; Richards, R. Geoff; Moriarty, T. Fintan

    2015-01-01

    Infection associated with orthopedic implants often results in bone loss and requires surgical removal of the implant. The aim of this study was to evaluate morphological changes of bone adjacent to a bacteria-colonized implant, with the aim of identifying temporal patterns that are characteristic of infection. In an in vivo study with rats, bone changes were assessed using in vivo microCT at 7 time points during a one-month postoperative period. The rats received either a sterile or Staphylococcus aureus-colonized polyetheretherketone screw in the tibia. Bone-implant contact, bone fraction, and bone changes (quiescent, resorbed, and new bone) were calculated from consecutive scans and validated against histomorphometry. The screw pullout strength was estimated from FE models and the results were validated against mechanical testing. In the sterile group, bone-implant contact, bone fraction, and mechanical fixation increased steadily until day 14 and then plateaued. In the infected group, they decreased rapidly. Bone formation was reduced while resorption was increased, with maximum effects observed within 6 days. In summary, the model presented is capable of evaluating the patterns of bone changes due to implant-related infections. The combined use of longitudinal in vivo microCT imaging and image-based finite element analysis provides characteristic signs of infection within 6 days. PMID:26064928

  12. Phase-selective image reconstruction of the lungs in small animals using micro-CT

    NASA Astrophysics Data System (ADS)

    Johnston, S. M.; Perez, B. A.; Kirsch, D. G.; Badea, C. T.

    2010-04-01

    Gating in small animal imaging can compensate for artifacts due to physiological motion. This paper presents a strategy for sampling and image reconstruction in the rodent lung using micro-CT. The approach involves rapid sampling of freebreathing mice without any additional hardware to detect respiratory motion. The projection images are analyzed postacquisition to derive a respiratory signal, which is used to provide weighting factors for each projection that favor a selected phase of the respiration (e.g. end-inspiration or end-expiration) for the reconstruction. Since the sampling cycle and the respiratory cycle are uncorrelated, the sets of projections corresponding to any of the selected respiratory phases do not have a regular angular distribution. This drastically affects the image quality of reconstructions based on simple filtered backprojection. To address this problem, we use an iterative reconstruction algorithm that combines the Simultaneous Algebraic Reconstruction Technique with Total Variation minimization (SART-TV). At each SART-TV iteration, backprojection is performed with a set of weighting factors that favor the desired respiratory phase. To reduce reconstruction time, the algorithm is implemented on a graphics processing unit. The performance of the proposed approach was investigated in simulations and in vivo scans of mice with primary lung cancers imaged with our in-house developed dual tube/detector micro-CT system. We note that if the ECG signal is acquired during sampling, the same approach could be used for phase-selective cardiac imaging.

  13. Implementation and commissioning of an integrated micro-CT/RT system with computerized independent jaw collimation

    SciTech Connect

    Jensen, Michael D.; Hrinivich, W. Thomas; Jung, Jongho A.; Holdsworth, David W.; Drangova, Maria; Chen, Jeff; Wong, Eugene

    2013-08-15

    Purpose: To design, construct, and commission a set of computer-controlled motorized jaws for a micro-CT/RT system to perform conformal image-guided small animal radiotherapy.Methods: The authors designed and evaluated a system of custom-built motorized orthogonal jaws, which allows the delivery of off-axis rectangular fields on a GE eXplore CT 120 preclinical imaging system. The jaws in the x direction are independently driven, while the y-direction jaws are symmetric. All motors have backup encoders, verifying jaw positions. Mechanical performance of the jaws was characterized. Square beam profiles ranging from 2 × 2 to 60 × 60 mm{sup 2} were measured using EBT2 film in the center of a 70 × 70 × 22 mm{sup 3} solid water block. Similarly, absolute depth dose was measured in a solid water and EBT2 film stack 50 × 50 × 50 mm{sup 3}. A calibrated Farmer ion chamber in a 70 × 70 × 20 mm{sup 3} solid water block was used to measure the output of three field sizes: 50 × 50, 40 × 40, and 30 × 30 mm{sup 2}. Elliptical target plans were delivered to films to assess overall system performance. Respiratory-gated treatment was implemented on the system and initially proved using a simple sinusoidal motion phantom. All films were scanned on a flatbed scanner (Epson 1000XL) and converted to dose using a fitted calibration curve. A Monte Carlo beam model of the micro-CT with the jaws has been created using BEAMnrc for comparison with the measurements. An example image-guided partial lung irradiation in a rat is demonstrated.Results: The averaged random error of positioning each jaw is less than 0.1 mm. Relative output factors measured with the ion chamber agree with Monte Carlo simulations within 2%. Beam profiles and absolute depth dose curves measured from the films agree with simulations within measurement uncertainty. Respiratory-gated treatments applied to a phantom moving with a peak-to-peak amplitude of 5 mm showed improved beam penumbra (80%–20%) from 3.9 to

  14. Design and fabrication of space variant micro optical elements

    NASA Astrophysics Data System (ADS)

    Srinivasan, Pradeep

    A wide range of applications currently utilize conventional optical elements to individually transform the phase, polarization, and spectral transmission/reflection of the incident radiation to realize the desired system level function. The material properties and the feasibility of fabrication primarily impact the device and system functionality that can be realized. With the advancement in micro/nano patterning, growth, deposition and etching technology, devices with novel and multiplexed optical functionalities have become feasible. As a result, it has become possible to engineer the device response in the near and far field by controlling the phase, polarization or spectral response at the micro scale. One of the methods that have been explored to realize unique optical functionalities is by varying the structural properties of the device as a function of spatial location at the sub-micron scale across the device aperture. Spatially varying the structural parameters of these devices is analogous to local modifications of the material properties. In this dissertation, the optical response of interference transmission filters, guided mode resonance reflection filters, and diffraction gratings operated in Littrow condition with strategically introduced spatial variation have been investigated. Spatial variations in optical interference filters were used to demonstrate wavelength tunable spatial filters. The effect was realized by integrating diffractive and continuous phase functions on the defect layer of a one-dimensional photonic crystal structure. Guided mode resonance filters are free space optical filters that provide narrow spectral reflection by combining grating and waveguide dispersion effects. Frequency dependent spatial reflection profiles were achieved by spatially varying the grating fill fraction in designed contours. Diffraction gratings with space variant fill fractions operating in Littrow condition were used to provide graded feedback profiles

  15. Imaging Invasion: Micro-CT imaging of adamantinomatous craniopharyngioma highlights cell type specific spatial relationships of tissue invasion.

    PubMed

    Apps, John R; Hutchinson, J Ciaran; Arthurs, Owen J; Virasami, Alex; Joshi, Abhijit; Zeller-Plumhoff, Berit; Moulding, Dale; Jacques, Thomas S; Sebire, Neil J; Martinez-Barbera, Juan Pedro

    2016-01-01

    Tissue invasion and infiltration by brain tumours poses a clinical challenge, with destruction of structures leading to morbidity. We assessed whether micro-CT could be used to map tumour invasion in adamantinomatous craniopharyngioma (ACP), and whether it could delineate ACPs and their intrinsic components from surrounding tissue.Three anonymised archival frozen ACP samples were fixed, iodinated and imaged using a micro-CT scanner prior to the use of standard histological processing and immunohistochemical techniques.We demonstrate that micro-CT imaging can non-destructively give detailed 3D structural information of tumours in volumes with isotropic voxel sizes of 4-6 microns, which can be correlated with traditional histology and immunohistochemistry.Such information complements classical histology by facilitating virtual slicing of the tissue in any plane and providing unique detail of the three dimensional relationships of tissue compartments. PMID:27260197

  16. Advances in lasers and optical micro-nano-systems

    NASA Astrophysics Data System (ADS)

    Laurell, F.; Fazio, E.

    2010-09-01

    Lasers represent a well consolidated technology: nevertheless, research in this field remains very active and productive, in both basic and applied directions. At the moment significant attention is given to those sources that bring together high power and compactness. Such high power lasers find important applications for material treatments and such applications are presented by Ehsani et al and Saiedeh Saghafi et al, in the treatment of dielectric thin films (Alteration of optical and morphological properties of polycarbonate illuminated by visible/IR laser beams) or of biological tissues like pistachio seeds (Investigating the effects of laser beams (532 and 660 nm) in annihilation of pistachio mould fungus using spectrophotometry analysis). In particular the latter paper show how laser sources can find very important applications in new domains, preserving goods and food without the need for preservatives or pesticides by simply sterilizing them using light. Optical Micro and Nano Systems presents a new domain for exploration. In this framework this special issue is very attractive, because it assembles papers reporting new results in three directions: new techniques for monitoring integrated micro- and nano-systems, new integrated systems and novel high performance metamaterial configurations. Integrated micro-components can be monitored and controlled using reflectance measurements as presented by Piombini et al (Toward the reflectance measurement of micro components). Speckle formation during laser beam reflection can also be a very sophisticated tool for detecting ultra-precise displacements, as presented by Filter et al (High resolution displacement detection with speckles : accuracy limits in linear displacement speckle metrology). Three dimensional integrated optical structures is indeed a big challenge and a peculiarity of photonics, they can be formed through traditional holography or using more sophisticated and novel ! technologies. Thus, special

  17. Prospective respiratory-gated micro-CT of free breathing rodents.

    PubMed

    Ford, Nancy L; Nikolov, Hristo N; Norley, Chris J D; Thornton, Michael M; Foster, Paula J; Drangova, Maria; Holdsworth, David W

    2005-09-01

    Microcomputed tomography (Micro-CT) has the potential to noninvasively image the structure of organs in rodent models with high spatial resolution and relatively short image acquisition times. However, motion artifacts associated with the normal respiratory motion of the animal may arise when imaging the abdomen or thorax. To reduce these artifacts and the accompanying loss of spatial resolution, we propose a prospective respiratory gating technique for use with anaesthetized, free-breathing rodents. A custom-made bed with an embedded pressure chamber was connected to a pressure transducer. Anaesthetized animals were placed in the prone position on the bed with their abdomens located over the chamber. During inspiration, the motion of the diaphragm caused an increase in the chamber pressure, which was converted into a voltage signal by the transducer. An output voltage was used to trigger image acquisition at any desired time point in the respiratory cycle. Digital radiographic images were acquired of anaesthetized, free-breathing rats with a digital radiographic system to correlate the respiratory wave form with respiration-induced organ motion. The respiratory wave form was monitored and recorded simultaneously with the x-ray radiation pulses, and an imaging window was defined, beginning at end expiration. Phantom experiments were performed to verify that the respiratory gating apparatus was triggering the micro-CT system. Attached to the distensible phantom were 100 microm diameter copper wires and the measured full width at half maximum was used to assess differences in image quality between respiratory-gated and ungated imaging protocols. This experiment allowed us to quantify the improvement in the spatial resolution, and the reduction of motion artifacts caused by moving structures, in the images resulting from respiratory-gated image acquisitions. The measured wire diameters were 0.135 mm for the stationary phantom image, 0.137 mm for the image gated at end

  18. Hybrid curved nano-structured micro-optical elements.

    PubMed

    Balčytis, A; Hakobyan, D; Gabalis, M; Žukauskas, A; Urbonas, D; Malinauskas, M; Petruškevičius, R; Brasselet, E; Juodkazis, S

    2016-07-25

    Tailoring the spatial degree of freedom of light is an essential step towards the realization of advanced optical manipulation tools. A topical challenge consists of device miniaturization for improved performance and enhanced functionality at the micron scale. We demonstrate a novel approach that combines the additive three-dimensional (3D) structuring capability of laser polymerization and the subtractive subwavelength resolution patterning of focused ion beam lithography. As a case in point hybrid (dielectric/metallic) micro-optical elements that deliver a well-defined topological shaping of light are produced. Here we report on hybrid 3D binary spiral zone plates with unit and double topological charge. Their optical performances are compared to corresponding 2D counterparts both numerically and experimentally. Cooperative refractive capabilities without compromising topological beam shaping are shown. Realization of advanced designs where the dielectric architecture itself is endowed with singular properties is also discussed. PMID:27464151

  19. Challenges in the segmentation and analysis of X-ray Micro-CT image data

    NASA Astrophysics Data System (ADS)

    Larsen, J. D.; Schaap, M. G.; Tuller, M.; Kulkarni, R.; Guber, A.

    2014-12-01

    Pore scale modeling of fluid flow is becoming increasing popular among scientific disciplines. With increased computational power, and technological advancements it is now possible to create realistic models of fluid flow through highly complex porous media by using a number of fluid dynamic techniques. One such technique that has gained popularity is lattice Boltzmann for its relative ease of programming and ability to capture and represent complex geometries with simple boundary conditions. In this study lattice Boltzmann fluid models are used on macro-porous silt loam soil imagery that was obtained using an industrial CT scanner. The soil imagery was segmented with six separate automated segmentation standards to reduce operator bias and provide distinction between phases. The permeability of the reconstructed samples was calculated, with Darcy's Law, from lattice Boltzmann simulations of fluid flow in the samples. We attempt to validate simulated permeability from differing segmentation algorithms to experimental findings. Limitations arise with X-ray micro-CT image data. Polychromatic X-ray CT has the potential to produce low image contrast and image artifacts. In this case, we find that the data is unsegmentable and unable to be modeled in a realistic and unbiased fashion.

  20. Improving spatial-resolution in high cone-angle micro-CT by source deblurring

    NASA Astrophysics Data System (ADS)

    Li, Heyang; Kingston, Andrew; Myers, Glenn; Recur, Benoit; Turner, Michael; Sheppard, Andrian

    2014-09-01

    Micro scale computed tomography (CT) can resolve many features in cellular structures, bone formations, minerals properties and composite materials not seen at lower spatial-resolution. Those features enable us to build a more comprehensive model for the object of interest. CT resolution is limited by a fundamental trade off between source size and signal-to-noise ratio (SNR) for a given acquisition time. There is a limit on the X-ray flux that can be emitted from a certain source size, and fewer photons cause a lower SNR. A large source size creates penumbral blurring in the radiograph, limiting the effective spatial-resolution in the reconstruction. High cone-angle CT improves SNR by increasing the X-ray solid angle that passes through the sample. In the high cone-angle regime current source deblurring methods break down due to incomplete modelling of the physical process. This paper presents high cone-angle source de-blurring models. We implement these models using a novel multi-slice Richardson-Lucy (M-RL) and 3D Conjugate Gradient deconvolution on experimental high cone-angle data to improve the spatial-resolution of the reconstructed volume. In M-RL, we slice the back projection volume into subsets which can be considered to have a relative uniform convolution kernel. We compare these results to those obtained from standard reconstruction techniques and current source deblurring methods (i.e. 2D Richardson-Lucy in the radiograph and the volume respectively).

  1. Visualization of 3D osteon morphology by synchrotron radiation micro-CT

    PubMed Central

    Cooper, D M L; Erickson, B; Peele, A G; Hannah, K; Thomas, C D L; Clement, J G

    2011-01-01

    Cortical bone histology has been the subject of scientific inquiry since the advent of the earliest microscopes. Histology – literally the study of tissue – is a field nearly synonymous with 2D thin sections. That said, progressive developments in high-resolution X-ray imaging are enabling 3D visualization to reach ever smaller structures. Micro-computed tomography (micro-CT), employing conventional X-ray sources, has become the gold standard for 3D analysis of trabecular bone and is capable of detecting the structure of vascular (osteonal) porosity in cortical bone. To date, however, direct 3D visualization of secondary osteons has eluded micro-CT based upon absorption-derived contrast. Synchrotron radiation micro-CT, through greater image quality, resolution and alternative contrast mechanisms (e.g. phase contrast), holds great potential for non-destructive 3D visualization of secondary osteons. Our objective was to demonstrate this potential and to discuss areas of bone research that can be advanced through the application of this approach. We imaged human mid-femoral cortical bone specimens derived from a 20-year-old male (Melbourne Femur Collection) at the Advanced Photon Source synchrotron (Chicago, IL, USA) using the 2BM beam line. A 60-mm distance between the target and the detector was employed to enhance visualization of internal structures through propagation phase contrast. Scan times were 1 h and images were acquired with 1.4-μm nominal isotropic resolution. Computer-aided manual segmentation and volumetric 3D rendering were employed to visualize secondary osteons and porous structures, respectively. Osteonal borders were evident via two contrast mechanisms. First, relatively new (hypomineralized) osteons were evident due to differences in X-ray attenuation relative to the surrounding bone. Second, osteon boundaries (cement lines) were delineated by phase contrast. Phase contrast also enabled the detection of soft tissue remnants within the

  2. Denoising of 4D Cardiac Micro-CT Data Using Median-Centric Bilateral Filtration

    PubMed Central

    Clark, D.; Johnson, G.A.; Badea, C.T.

    2012-01-01

    Bilateral filtration has proven an effective tool for denoising CT data. The classic filter utilizes Gaussian domain and range weighting functions in 2D. More recently, other distributions have yielded more accurate results in specific applications, and the bilateral filtration framework has been extended to higher dimensions. In this study, brute-force optimization is employed to evaluate the use of several alternative distributions for both domain and range weighting: Andrew's Sine Wave, El Fallah Ford, Gaussian, Flat, Lorentzian, Huber's Minimax, Tukey's Bi-weight, and Cosine. Two variations on the classic bilateral filter which use median filtration to reduce bias in range weights are also investigated: median-centric and hybrid bilateral filtration. Using the 4D MOBY mouse phantom reconstructed with noise (stdev. ~ 65 HU), hybrid bilateral filtration, a combination of the classic and median-centric filters, with Flat domain and range weighting is shown to provide optimal denoising results (PSNRs: 31.69, classic; 31.58 median-centric; 32.25, hybrid). To validate these phantom studies, the optimal filters are also applied to in vivo, 4D cardiac micro-CT data acquired in the mouse. In a constant region of the left ventricle, hybrid bilateral filtration with Flat domain and range weighting is shown to provide optimal smoothing (stdev: original, 72.2 HU; classic, 20.3 HU; median-centric, 24.1 HU; hybrid, 15.9 HU). While the optimal results were obtained using 4D filtration, the 3D hybrid filter is ultimately recommended for denoising 4D cardiac micro-CT data because it is more computationally tractable and less prone to artifacts (MOBY PSNR: 32.05; left ventricle stdev: 20.5 HU). PMID:24386540

  3. Micro-CT applications to Seismic Monitoring of EOR and Carbon Sequestration Sites

    NASA Astrophysics Data System (ADS)

    Mur, A. J.; Crandall, D.; Purcell, C. C.; Bromhal, G. S.; Soong, Y.; Warzinski, R.; McClendon, B.; Harbert, W.

    2011-12-01

    In order to monitor a CO2 injection site with reflection seismic and VSP surveying, the dynamic rock matrix must be thoroughly understood. We present our results and approach to upscale micro-scale rock matrix properties to reservoir scale and seismic frequency ranges based on theoretical rock wave propagation models and show the richness of useful data produced by micro computed tomography (CT). We have acquired and processed CT images of limestone, sandstone and synthetic samples to gain understanding of 3-D pore orientation, pore volume distribution and pore surface area geometry from 1.25 to 4 micrometer-per-pixel resolution. By comparing CT scans from before and after timed CO2 exposures(Figure 1 shows dissolution along high aspect ratio crack in limestone sample), rock density and pore volume changes relative to time are quantified. In a 19% porosity limestone sample, our analysis identifies and describes over twelve thousand pores in a 26 cubic millimeter volume at a resolution of 3.92 micron/pixel. We produce a digital rock mesh with which we simulate fluid flow in the matrix. As opposed to large scale plume predictions, this small scale flow model helps predict how CO2 will be distributed in a zone that is under a constant flux of CO2. By observing available reactive surface area of the porosity and mass change over a series of time increments, we chemically model limestone-CO2 interactions to predict how, over time, a carbonate reservoir will change due to storage of CO2. This porosity and density change model is applied to a larger-scale reservoir model that detects the presence of CO2 density signatures using AVO (amplitude variation with offset) and VSP (vertical seismic profile) techniques. This application produces theoretical seismic volumes of uncompromised future reservoirs that can be compared to repeat surveys for leak detection.

  4. Experimental study on resonator micro-optic gyroscope

    NASA Astrophysics Data System (ADS)

    Zhao, Meng; Shi, Bang-ren; Chen, Chen; Guo, Li-jun; Zhang, Rong; Zhang, Qiu-e.

    2011-08-01

    Resonator optic gyroscope (ROG) based on Sagnac effect has been investigated over the past years and developed as an attractive device for many applications. Resonator micro-optic gyroscope (R-MOG) with an only several-cm-long ring on a wafer is a promising candidate for the new generation inertial rotation sensor. Using micro machining process, R-MOG was manufactured on the silicon or LiNbO3 wafer by etching passive optical ring resonator devices. It has great advantages by realizing the minitype. R-MOG is a kind of optic gyroscope by detecting the resonance frequency difference of the clockwise and counterclockwise resonance to measure the angular velocity. The Sagnac effect is extremely weak, so the detection method has been the key point in researching R-MOG. Using the multi-beam superposition principle, we theoretically analyzed the signal detection scheme based on laser frequency modulation and experimentally investigated the equivalent open-loop signals of a R-MOG chip. The passive ring resonator (PRR), the core component of R-MOG, was composed of a ring waveguide with a radius of 2cm and an optical coupler with the coupling ratio of 12%. The resonance curve showed that the free spectral range (FSR), full width at half maximum (FWHM) and fineness were 3.0378GHz, 74.09MHz and 41, respectively. In the equivalent open-loop experiment, the counterclockwise (CCW) light frequency was locked to its resonant point, and the clockwise (CW) optical frequency changed around the CW resonant point. The experimental results illustrated that the sensitivity of the R-MOG was 6.15 rad/s.

  5. Micro-CT evaluation of murine fetal skeletal development yields greater morphometric precision over traditional clear-staining methods.

    PubMed

    Oest, Megan E; Jones, Jeryl C; Hatfield, Cindy; Prater, M Renee

    2008-12-01

    Traditional techniques for quantification of murine fetal skeletal development (gross measurements, clear-staining) are severely limited by specimen processing, soft tissue presence, diffuse staining, and unclear landmarks between which to make measurements. Nondestructive microcomputed tomography (micro-CT) imaging is a versatile, well-documented tool traditionally used to generate high-resolution 3-D images and quantify microarchitectural parameters of trabecular bone. Although previously described as a tool for phenotyping fetal murine specimens, micro-CT has not previously been used to directly measure individual fetal skeletal structures. Imaging murine fetal skeletons using micro-CT enables the researcher to nondestructively quantify fetal skeletal development parameters including limb length, total bone volume, and average bone mineral density, as well as identify skeletal malformations. Micro-CT measurement of fetal limb lengths correlates well with traditional clear-staining methods (83.98% agreement), decreases variability in measurements (average standard errors: 6.28% for micro-CT and 10.82% for clear-staining), decreases data acquisition time by eliminating the need for tissue processing, and preserves the intact fixed fetus for further analysis. Use of the rigorous micro-CT technique to generate 3-D images for digital measurement enables isolation of skeletal structures based on degree of mineralization (local radiodensity), eliminating the complications of blurred stain boundaries and soft tissue inclusion that accompany clear-staining and gross measurement techniques. Microcomputed tomography provides a facile, accurate, and nondestructive method for determining the developmental state of the fetal skeleton using not only limb lengths and identification of malformations, but total skeletal bone volume and average skeletal mineral density as well. PMID:19048632

  6. Meso-/micro-optical system interface coupling solutions.

    SciTech Connect

    Armendariz, Marcelino G.; Kemme, Shanalyn A.; Boye, Robert R.

    2005-10-01

    Optoelectronic microsystems are more and more prevalent as researchers seek to increase transmission bandwidths, implement electrical isolation, enhance security, or take advantage of sensitive optical sensing methods. Board level photonic integration techniques continue to improve, but photonic microsystems and fiber interfaces remain problematic, especially upon size reduction. Optical fiber is unmatched as a transmission medium for distances ranging from tens of centimeters to kilometers. The difficulty with using optical fiber is the small size of the core (approximately 9 {micro}m for the core of single mode telecommunications fiber) and the tight requirement on spot size and input numerical aperture (NA). Coupling to devices such as vertical cavity emitting lasers (VCSELs) and photodetectors presents further difficulties since these elements work in a plane orthogonal to the electronics board and typically require additional optics. This leads to the need for a packaging solution that can incorporate dissimilar materials while maintaining the tight alignment tolerances required by the optics. Over the course of this LDRD project, we have examined the capabilities of components such as VCSELs and photodetectors for high-speed operation and investigated the alignment tolerances required by the optical system. A solder reflow process has been developed to help fulfill these packaging requirements and the results of that work are presented here.

  7. Evaluation of the OSC-TV iterative reconstruction algorithm for cone-beam optical CT

    SciTech Connect

    Matenine, Dmitri Mascolo-Fortin, Julia; Goussard, Yves

    2015-11-15

    Purpose: The present work evaluates an iterative reconstruction approach, namely, the ordered subsets convex (OSC) algorithm with regularization via total variation (TV) minimization in the field of cone-beam optical computed tomography (optical CT). One of the uses of optical CT is gel-based 3D dosimetry for radiation therapy, where it is employed to map dose distributions in radiosensitive gels. Model-based iterative reconstruction may improve optical CT image quality and contribute to a wider use of optical CT in clinical gel dosimetry. Methods: This algorithm was evaluated using experimental data acquired by a cone-beam optical CT system, as well as complementary numerical simulations. A fast GPU implementation of OSC-TV was used to achieve reconstruction times comparable to those of conventional filtered backprojection. Images obtained via OSC-TV were compared with the corresponding filtered backprojections. Spatial resolution and uniformity phantoms were scanned and respective reconstructions were subject to evaluation of the modulation transfer function, image uniformity, and accuracy. The artifacts due to refraction and total signal loss from opaque objects were also studied. Results: The cone-beam optical CT data reconstructions showed that OSC-TV outperforms filtered backprojection in terms of image quality, thanks to a model-based simulation of the photon attenuation process. It was shown to significantly improve the image spatial resolution and reduce image noise. The accuracy of the estimation of linear attenuation coefficients remained similar to that obtained via filtered backprojection. Certain image artifacts due to opaque objects were reduced. Nevertheless, the common artifact due to the gel container walls could not be eliminated. Conclusions: The use of iterative reconstruction improves cone-beam optical CT image quality in many ways. The comparisons between OSC-TV and filtered backprojection presented in this paper demonstrate that OSC-TV can

  8. Optimization of a retrospective technique for respiratory-gated high speed micro-CT of free-breathing rodents

    NASA Astrophysics Data System (ADS)

    Ford, Nancy L.; Wheatley, Andrew R.; Holdsworth, David W.; Drangova, Maria

    2007-09-01

    The objective of this study was to develop a technique for dynamic respiratory imaging using retrospectively gated high-speed micro-CT imaging of free-breathing mice. Free-breathing C57Bl6 mice were scanned using a dynamic micro-CT scanner, comprising a flat-panel detector mounted on a slip-ring gantry. Projection images were acquired over ten complete gantry rotations in 50 s, while monitoring the respiratory motion in synchrony with projection-image acquisition. Projection images belonging to a selected respiratory phase were retrospectively identified and used for 3D reconstruction. The effect of using fewer gantry rotations—which influences both image quality and the ability to quantify respiratory function—was evaluated. Images reconstructed using unique projections from six or more gantry rotations produced acceptable images for quantitative analysis of lung volume, CT density, functional residual capacity and tidal volume. The functional residual capacity (0.15 ± 0.03 mL) and tidal volumes (0.08 ± 0.03 mL) measured in this study agree with previously reported measurements made using prospectively gated micro-CT and at higher resolution (150 µm versus 90 µm voxel spacing). Retrospectively gated micro-CT imaging of free-breathing mice enables quantitative dynamic measurement of morphological and functional parameters in the mouse models of respiratory disease, with scan times as short as 30 s, based on the acquisition of projection images over six gantry rotations.

  9. Contrast Enhancement of MicroCT Scans to Aid 3D Modelling of Carbon Fibre Fabric Composites

    NASA Astrophysics Data System (ADS)

    Djukic, Luke P.; Pearce, Garth M.; Herszberg, Israel; Bannister, Michael K.; Mollenhauer, David H.

    2013-12-01

    This paper presents a methodology for volume capture and rendering of plain weave and multi-layer fabric meso-architectures within a consolidated, cured laminate. Micro X-ray Computed Tomography (MicroCT) is an excellent tool for the non-destructive visualisation of material microstructures however the contrast between tows and resin is poor for carbon fibre composites. Firstly, this paper demonstrates techniques to improve the contrast of the microCT images by introducing higher density materials such as gold, iodine and glass into the fabric. Two approaches were demonstrated to be effective for enhancing the differentiation between the tows in the reconstructed microCT visualisations. Secondly, a method of generating three-dimensional volume models of woven composites using microCT scan data is discussed. The process of generating a model is explained from initial manufacture with the aid of an example plain weave fabric. These methods are to be used in the finite element modelling of three-dimensional fabric preforms in future work.

  10. Micro-CT imaging: Developing criteria for examining fetal skeletons in regulatory developmental toxicology studies - A workshop report.

    PubMed

    Solomon, Howard M; Makris, Susan L; Alsaid, Hasan; Bermudez, Oscar; Beyer, Bruce K; Chen, Antong; Chen, Connie L; Chen, Zhou; Chmielewski, Gary; DeLise, Anthony M; de Schaepdrijver, Luc; Dogdas, Belma; French, Julian; Harrouk, Wafa; Helfgott, Jonathan; Henkelman, R Mark; Hesterman, Jacob; Hew, Kok-Wah; Hoberman, Alan; Lo, Cecilia W; McDougal, Andrew; Minck, Daniel R; Scott, Lelia; Stewart, Jane; Sutherland, Vicki; Tatiparthi, Arun K; Winkelmann, Christopher T; Wise, L David; Wood, Sandra L; Ying, Xiaoyou

    2016-06-01

    During the past two decades the use and refinements of imaging modalities have markedly increased making it possible to image embryos and fetuses used in pivotal nonclinical studies submitted to regulatory agencies. Implementing these technologies into the Good Laboratory Practice environment requires rigorous testing, validation, and documentation to ensure the reproducibility of data. A workshop on current practices and regulatory requirements was held with the goal of defining minimal criteria for the proper implementation of these technologies and subsequent submission to regulatory agencies. Micro-computed tomography (micro-CT) is especially well suited for high-throughput evaluations, and is gaining popularity to evaluate fetal skeletons to assess the potential developmental toxicity of test agents. This workshop was convened to help scientists in the developmental toxicology field understand and apply micro-CT technology to nonclinical toxicology studies and facilitate the regulatory acceptance of imaging data. Presentations and workshop discussions covered: (1) principles of micro-CT fetal imaging; (2) concordance of findings with conventional skeletal evaluations; and (3) regulatory requirements for validating the system. Establishing these requirements for micro-CT examination can provide a path forward for laboratories considering implementing this technology and provide regulatory agencies with a basis to consider the acceptability of data generated via this technology. PMID:26930635

  11. Enamel and dentin mineralization in familial hypophosphatemic rickets: a micro-CT study

    PubMed Central

    Costa, F W G; Soares, E C S; Williams, J R; Fonteles, C S R

    2015-01-01

    Objectives: The aim of the present study was to analyse the mineralization pattern of enamel and dentin in patients affected by X-linked hypophosphatemic rickets (XLHR) using micro-CTCT), and to associate enamel and dentin mineralization in primary and permanent teeth with tooth position, gender and the presence/absence of this disease. Methods: 19 teeth were collected from 5 individuals from the same family, 1 non-affected by XLHR and 4 affected by XLHR. Gender, age, tooth position (anterior/posterior) and tooth type (deciduous/permanent) were recorded for each patient. Following collection, teeth were placed in 0.1% thymol solution until µCT scan. Projection images were reconstructed and analysed. A plot profile describing the greyscale distance relationship in µCT images was achieved through a line bisecting each tooth in a region with the presence of enamel and dentin. The enamel and dentin mineralization densities were measured and compared. Univariate ANOVA and post hoc Tukey tests were used for all comparisons. Results: Teeth of all affected patients presented dentin with a different mineralization pattern compared with the teeth of healthy patients with dentin defects observed next to the pulp chambers. Highly significant differences were found for gray values between anterior and posterior teeth (p < 0.05), affected and non-affected (p < 0.05), as well as when position and disease status were considered (p < 0.05). Conclusions: In conclusion, the mineralization patterns of dentin differed when comparing teeth from patients with and without FHR, mainly next to pulp chambers where areas with porosity and consequently lower mineral density and dentin defects were found. PMID:25651274

  12. Enamel pearls in permanent dentition: case report and micro-CT evaluation

    PubMed Central

    Versiani, MA; Cristescu, RC; Pécora, JD; de Sousa-Neto, MD

    2013-01-01

    Objectives: To investigate the frequency, position, number and morphology of enamel pearls (EPs) using micro-CTCT) and to report a case of an EP mimicking an endodontic–periodontic lesion. Methods: Cone beam CT (CBCT) was performed in a patient to evaluate a radio-opaque nodule observed on the left maxillary first molar during the radiographic examination. Additionally, 23 EPs were evaluated regarding frequency, position, number and morphology by means of µCT. The results were statistically compared using the Student’s t-test for independent samples. Results: 1 pearl was presented in 13 specimens, while 5 specimens presented 2 pearls. The most frequent location of the EPs was the furcation between the disto-buccal and the palatal roots of the maxillary molars. Overall, the mean major diameter, volume and surface area were 1.98 ± 0.85 mm, 1.76 ± 1.36 mm3 and 11.40 ± 7.59 mm2, respectively, with no statistical difference between maxillary second and third molars (p > 0.05). In the case report, CBCT revealed an EP between the disto-buccal and the palatal roots of the maxillary first left molar associated with advanced localized periodontitis. The tooth was referred for extraction. Conclusions: EPs, located generally in the furcation area, were observed in 0.74% of the sample. The majority was an enamel–dentin pearl type and no difference was found in maxillary second and third molars regarding diameter, volume and surface area of the pearls. In this report, the EP mimicked an endodontic–periodontic lesion and was a secondary aetiological factor in the periodontal breakdown. PMID:23520396

  13. Manufacture of an optical effector using silicon micro-machining

    NASA Astrophysics Data System (ADS)

    Berrill, M. G.; McKenzie, J. S.; Clark, C.

    2000-03-01

    Using a complex micro-machined structure a novel optical-to-fluid pressure converter has been developed. The device offers immunity from electromagnetic interference and the potential for intrinsic safety. The effector, an improved version of a previous device, has been further miniaturized and fully micro-machined from silicon and glass. The device operates when light enters a sealed air-filled cell, formed within a silicon wafer, and is converted to heat by an absorber. The associated rise in temperature increases the pressure inside the cell and forces a diaphragm to move. The diaphragm movement is detected by a change in the back pressure of an impinging jet of fluid; which can be either pneumatic or hydraulic. The response time of the device, of the order of tens of milliseconds, has been further reduced as a result of miniaturization. This paper outlines the manufacturing technique and presents selected experimental test results.

  14. Optical CT scanning of PRESAGETM polyurethane samples with a CCD-based readout system

    NASA Astrophysics Data System (ADS)

    Doran, S. J.; Krstajic, N.; Adamovics, J.; Jenneson, P. M.

    2004-01-01

    This article demonstrates the resolution capabilities of the CCD scanner under ideal circumstances and describes the first CCD-based optical CT experiments on a new class of dosimeter, known as PRESAGETM (Heuris Pharma, Skillman, NJ).

  15. Vacuum isostatic micro molding of reflective micro-optical structures into polytetrafluoroethylene materials

    NASA Astrophysics Data System (ADS)

    Lizotte, Todd E.; Ohar, Orest

    2008-04-01

    Polytetrafluoroethylene (PTFE) is an ideal material for use in industrial, automotive and consumer electronics. Specifically, PTFE has outstanding physical properties; such as chemical inertness and resistance to chemical corrosion, even when exposed to a strong acid, alkali and oxidants. Its properties provide for superior electrical insulation and thermal stability, which is not affected by wide ranges in temperature and frequency. Its non-absorption of moisture makes it a perfect material for consideration in micro optical, retro-reflector or diffuser type devices used in optical sensor applications in harsh environments as well as in automotive, aerospace, industrial and home lighting. This paper presents an overview of a unique fabrication method that incorporates a variety of technologies to establish a processing technique that can form micro scale diffractive and retro-reflective structures into fused and semi-fused PTFE materials. Example structures and a single design will that was function tested will be presented with comparison metrology of the micro-structure geometry formed on the sample as compared to the original design mandrel geometry.

  16. Miniature Ion Optics Towards a Micro Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Chaudhary, Ashish

    This PhD dissertation reports the development of miniature ion optics components of a mass spectrometer (MS) with the ultimate goal to lay the foundation for a compact low-power micromachined MS (microMS) for broad-range chemical analysis. Miniaturization of two specific components a) RF ion traps and b) an ion funnel have been investigated and miniature low-power versions of these components have been developed and demonstrated successfully in lab experiments. Power savings, simpler electronics and packaging schemes required to operate the micro-scale RF cylindrical ion traps have been the key motivation driving this research. Microfabricated cylindrical ion traps (microCITs) and arrays in silicon, silicon-on-insulator and stainless steel substrates have been demonstrated and average power of as low as 55 mW for a low mass range (28 to 136 amu) and mass spectra with better than a unit-mass-resolution have been recorded. For the ion funnel miniaturization effort, simple assembly, small form factor and ease of integration have been emphasized. A simplification of the conventional 3D ion funnel design, called the planar ion funnel, has been developed in a single plate and has been tested to demonstrate ion funneling at medium vacuum levels (1E-5 Torr) using DC voltages and power less than 0.5 W. Miniaturization of these components also enables use of other novel ion optics components, packaging and integration, which will allow a new class of microMS architectures amenable for radical miniaturization.

  17. Micro-optical designs for angular confinement in solar cells

    NASA Astrophysics Data System (ADS)

    Gordon, Jeffrey M.; Feuermann, Daniel; Mashaal, Heylal

    2015-01-01

    We identify and evaluate a variety of efficient and feasible micro-optics for confining the radiative emission of solar cells. The key criteria used for assessing viable designs are (1) high optical efficiency for both the transmission of impinging solar beam radiation and the external recycling of isotropic cell luminescent emission; (2) liberal optical tolerance; (3) compactness and (4) being amenable to fabrication from existing materials and manufacturing processes. Both imaging and nonimaging candidate designs are presented, and their superiority to previous proposals is quantified. The strategy of angular confinement for boosting cell open-circuit voltage-thereby enhancing conversion efficiency-is limited to cells where radiative recombination is the dominant carrier recombination pathway. Optical systems that restrict the angular range for emission of cell luminescence must, by reciprocity, commensurately restrict the angular range for the collection of solar radiation. This, in turn, mandates the introduction of concentrators, but not for the objective of delivering concentrated flux onto the cell. Rather, the optical system must project an acceptably uniform spatial distribution of solar flux onto the cell surface at a nominal averaged irradiance of 1 sun.

  18. Microjet printing of micro-optical interconnects and sensors

    NASA Astrophysics Data System (ADS)

    Cox, Weldon R.; Guan, Chi; Hayes, Donald J.

    2000-04-01

    The microjet printing method is being used to fabricate microlens arrays for use in massively parallel, VCSEL-based datacom switches and to deposit lenslets of various configurations onto the tips of single-mode telecom fibers. Applications in the latter case include collimation of the output beams for free space optical interconnection and increasing the fiber numerical aperture for collection of light from edge-emitting diode lasers. Additional applications of this technology include point of arrays of active sensor elements onto the tips of imaging fiber bundles and fabrication of microlenses with axial index of refraction gradients to reduce focal spot size, utilizing multiple print heads with differing fluids. This low-cost, data-driven process, based on 'drop-on-demand' inkjet technology, involves the dispensing the placing of precisely sized microdroplets of optical material onto optical substrates. The micro-optical elements are printed with 100 percent solid, UV-curing optical epoxies, utilizing printing devices that can dispense picoliter-volume droplets at temperatures up to 300 degrees C.

  19. SU-E-I-85: Absorbed Dose Estimation for a Commercially Available MicroCT Scanner

    SciTech Connect

    Lau, A; Ahmad, S; Chen, Y; Ren, L; Liu, H; Yang, K

    2015-06-15

    Purpose: To quantify the simulated absorbed dose delivered for a typical scan from a commercially available microCT scanner in order to aid in the dose estimation. Methods: The simulations were conducted using the Geant4 Monte Carlo Toolkit (version 10) with the standard electromagnetic classes. The Quantum FX microCT scanner (PerkinElmer, Waltham, MA) was modeled incorporating the energy fluence and angular distributions of generated photons, spatial dimensions of nominal source-to-object and source-to-detector distances. The energy distribution was measured using a spectrometer (X-123CdTe, Amptek Inc., Bedford, USA) with a 300 angular spread from the source for the 90 kVp X-ray beams with no additional filtration. The nominal distances from the source to object consisted of three setups: 154.0 mm, 104.0 mm, and 51.96 mm. Our simulations recorded the dose absorbed in a cylindrical phantom of PMMA with a fixed length of 2 cm and varying radii (10, 20, 30 and 40 mm) using 100 million incident photons. The averaged absorbed dose in the object was then quantified for all setups. An exposure measurement of 417 mR was taken using a Radcal 9095 system utilizing 10×9–180 ion chamber with the given technique of 90 kVp, 63 μA, and 12 s. The exposure rate was also simulated with same setup to calculate the conversion factor of the beam current and the number of incident photons. Results: For a typical cone-beam scan with non-filtered 90kVp, the dose coefficients (the absorbed dose per mAs) were 2.614, 2.549 and 2.467 μGy/mAs under source to object distance of 104 mm for the object diameters of 10 mm, 20 mm and 30 mm, respectively. Conclusion: A look-up table was developed where an investigator can estimate the delivered dose using this particular microCT given the scanning protocol (kVp and mAs) as well as the size of the scanned object.

  20. Image-Guided Radiotherapy Using a Modified Industrial Micro-CT for Preclinical Applications

    PubMed Central

    Felix, Manuela C.; Fleckenstein, Jens; Kirschner, Stefanie; Hartmann, Linda; Wenz, Frederik; Brockmann, Marc A.

    2015-01-01

    Purpose/Objective Although radiotherapy is a key component of cancer treatment, its implementation into pre-clinical in vivo models with relatively small target volumes is frequently omitted either due to technical complexity or expected side effects hampering long-term observational studies. We here demonstrate how an affordable industrial micro-CT can be converted into a small animal IGRT device at very low costs. We also demonstrate the proof of principle for the case of partial brain irradiation of mice carrying orthotopic glioblastoma implants. Methods/Materials A commercially available micro-CT originally designed for non-destructive material analysis was used. It consists of a CNC manipulator, a transmission X-ray tube (10–160 kV) and a flat-panel detector, which was used together with custom-made steel collimators (1–5 mm aperture size). For radiation field characterization, an ionization chamber, water-equivalent slab phantoms and radiochromic films were used. A treatment planning tool was implemented using a C++ application. For proof of principle, NOD/SCID/γc−/− mice were orthotopically implanted with U87MG high-grade glioma cells and irradiated using the novel setup. Results The overall symmetry of the radiation field at 150 kV was 1.04±0.02%. The flatness was 4.99±0.63% and the penumbra widths were between 0.14 mm and 0.51 mm. The full width at half maximum (FWHM) ranged from 1.97 to 9.99 mm depending on the collimator aperture size. The dose depth curve along the central axis followed a typical shape of keV photons. Dose rates measured were 10.7 mGy/s in 1 mm and 7.6 mGy/s in 5 mm depth (5 mm collimator aperture size). Treatment of mice with a single dose of 10 Gy was tolerated well and resulted in central tumor necrosis consistent with therapeutic efficacy. Conclusion A conventional industrial micro-CT can be easily modified to allow effective small animal IGRT even of critical target volumes such as the brain. PMID:25993010

  1. Optical Tweezers for Sample Fixing in Micro-Diffraction Experiments

    SciTech Connect

    Amenitsch, H.; Rappolt, M.; Sartori, B.; Laggner, P.; Cojoc, D.; Ferrari, E.; Garbin, V.; Di Fabrizio, E.; Burghammer, M.; Riekel, Ch.

    2007-01-19

    In order to manipulate, characterize and measure the micro-diffraction of individual structural elements down to single phospholipid liposomes we have been using optical tweezers (OT) combined with an imaging microscope. We were able to install the OT system at the microfocus beamline ID13 at the ESRF and trap clusters of about 50 multi-lamellar liposomes (< 10 {mu}m large cluster). Further we have performed a scanning diffraction experiment with a 1 micrometer beam to demonstrate the fixing capabilities and to confirm the size of the liposome cluster by X-ray diffraction.

  2. A flat-panel detector based micro-CT system: performance evaluation for small-animal imaging.

    PubMed

    Lee, Sang Chul; Kim, Ho Kyung; Chun, In Kon; Cho, Myung Hye; Lee, Soo Yeol; Cho, Min Hyoung

    2003-12-21

    A dedicated small-animal x-ray micro computed tomography (micro-CT) system has been developed to screen laboratory small animals such as mice and rats. The micro-CT system consists of an indirect-detection flat-panel x-ray detector with a field-of-view of 120 x 120 mm2, a microfocus x-ray source, a rotational subject holder and a parallel data processing system. The flat-panel detector is based on a matrix-addressed photodiode array fabricated by a CMOS (complementary metal-oxide semiconductor) process coupled to a CsI:T1 (thallium-doped caesium iodide) scintillator as an x-ray-to-light converter. Principal imaging performances of the micro-CT system have been evaluated in terms of image uniformity, voxel noise and spatial resolution. It has been found that the image non-uniformity mainly comes from the structural non-uniform sensitivity pattern of the flat-panel detector and the voxel noise is about 48 CT numbers at the voxel size of 100 x 100 x 200 microm3 and the air kerma of 286 mGy. When the magnification ratio is 2, the spatial resolution of the micro-CT system is about 14 1p/mm (line pairs per millimetre) that is almost determined by the flat-panel detector showing about 7 1p/mm resolving power. Through low-contrast phantom imaging studies, the minimum resolvable contrast has been found to be less than 36 CT numbers at the air kerma of 95 mGy. Some laboratory rat imaging results are presented. PMID:14727760

  3. Micro-optical elements functioning in non-visible spectral range

    NASA Astrophysics Data System (ADS)

    Wang, Qin; Zhang, Andy Z. Z.; Bergström, Andreas; Huo, Vicky Z. J.; Almqvist, Susanne; Kaplan, Wlodek; Andersson, Jan Y.

    2010-05-01

    Nowadays novel micro-fabrication and wafer-based manufacturing approach allows realizing micro-optics in a way scientists have dreamt for generations, in particular, utilizing nano-imprint lithography as fabrication tooling enables greatly accelerating the micro-optics technology to its frontier. In this report, we present wafer-scale fabrication of various types of micro-optical elements based on photoresist, benzocyclobutene, photocurable imprint resist, and semiconductor materials by using thermal reflow, reactive ion etching, and imprint techniques. Especially, several concave or convex 3-dimensional micro-optical structures shaped by imprint method are detailed. These micro-optical elements can be monolithically or hybrid integrated onto optoelectronics devices, such as photodetectors and emitters as optical beam focuser, collimator, filter, or anti-reflectance elements. As application examples, polymer microlenses were integrated directly on the top of UV dual functional devices and quantum dot long wavelength infrared photodetectors, respectively.

  4. Using Micro-CT Derived Bone Microarchitecture to Analyze Bone Stiffness - A Case Study on Osteoporosis Rat Bone.

    PubMed

    Wu, Yuchin; Adeeb, Samer; Doschak, Michael R

    2015-01-01

    Micro-computed tomography (Micro-CT) images can be used to quantitatively represent bone geometry through a range of computed attenuation-based parameters. Nonetheless, those parameters remain indirect indices of bone microarchitectural strength and require further computational tools to interpret bone structural stiffness and potential for mechanical failure. Finite element analysis (FEA) can be applied to measure trabecular bone stiffness and potentially predict the location of structural failure in preclinical animal models of osteoporosis, although that procedure from image segmentation of Micro-CT derived bone geometry to FEA is often challenging and computationally expensive, resulting in failure of the model to build. Notably, the selection of resolution and threshold for bone segmentation are key steps that greatly affect computational complexity and validity. In the following study, we evaluated an approach whereby Micro-CT derived grayscale attenuation and segmentation data guided the selection of trabecular bone for analysis by FEA. We further correlated those FEA results to both two- and three-dimensional bone microarchitecture from sham and ovariectomized (OVX) rats (n = 10/group). A virtual cylinder of vertebral trabecular bone 40% in length from the caudal side was selected for FEA, because Micro-CT based image analysis indicated the largest differences in microarchitecture between the two groups resided there. Bone stiffness was calculated using FEA and statistically correlated with the three-dimensional values of bone volume/tissue volume, bone mineral density, fractal dimension, trabecular separation, and trabecular bone pattern factor. Our method simplified the process for the assessment of trabecular bone stiffness by FEA from Micro-CT images and highlighted the importance of bone microarchitecture in conferring significantly increased bone quality capable of resisting failure due to increased mechanical loading. PMID:26042089

  5. Using Micro-CT Derived Bone Microarchitecture to Analyze Bone Stiffness – A Case Study on Osteoporosis Rat Bone

    PubMed Central

    Wu, Yuchin; Adeeb, Samer; Doschak, Michael R.

    2015-01-01

    Micro-computed tomography (Micro-CT) images can be used to quantitatively represent bone geometry through a range of computed attenuation-based parameters. Nonetheless, those parameters remain indirect indices of bone microarchitectural strength and require further computational tools to interpret bone structural stiffness and potential for mechanical failure. Finite element analysis (FEA) can be applied to measure trabecular bone stiffness and potentially predict the location of structural failure in preclinical animal models of osteoporosis, although that procedure from image segmentation of Micro-CT derived bone geometry to FEA is often challenging and computationally expensive, resulting in failure of the model to build. Notably, the selection of resolution and threshold for bone segmentation are key steps that greatly affect computational complexity and validity. In the following study, we evaluated an approach whereby Micro-CT derived grayscale attenuation and segmentation data guided the selection of trabecular bone for analysis by FEA. We further correlated those FEA results to both two- and three-dimensional bone microarchitecture from sham and ovariectomized (OVX) rats (n = 10/group). A virtual cylinder of vertebral trabecular bone 40% in length from the caudal side was selected for FEA, because Micro-CT based image analysis indicated the largest differences in microarchitecture between the two groups resided there. Bone stiffness was calculated using FEA and statistically correlated with the three-dimensional values of bone volume/tissue volume, bone mineral density, fractal dimension, trabecular separation, and trabecular bone pattern factor. Our method simplified the process for the assessment of trabecular bone stiffness by FEA from Micro-CT images and highlighted the importance of bone microarchitecture in conferring significantly increased bone quality capable of resisting failure due to increased mechanical loading. PMID:26042089

  6. Single 3D cell segmentation from optical CT microscope images

    NASA Astrophysics Data System (ADS)

    Xie, Yiting; Reeves, Anthony P.

    2014-03-01

    The automated segmentation of the nucleus and cytoplasm regions in 3D optical CT microscope images has been achieved with two methods, a global threshold gradient based approach and a graph-cut approach. For the first method, the first two peaks of a gradient figure of merit curve are selected as the thresholds for cytoplasm and nucleus segmentation. The second method applies a graph-cut segmentation twice: the first identifies the nucleus region and the second identifies the cytoplasm region. Image segmentation of single cells is important for automated disease diagnostic systems. The segmentation methods were evaluated with 200 3D images consisting of 40 samples of 5 different cell types. The cell types consisted of columnar, macrophage, metaplastic and squamous human cells and cultured A549 cancer cells. The segmented cells were compared with both 2D and 3D reference images and the quality of segmentation was determined by the Dice Similarity Coefficient (DSC). In general, the graph-cut method had a superior performance to the gradient-based method. The graph-cut method achieved an average DSC of 86% and 72% for nucleus and cytoplasm segmentations respectively for the 2D reference images and 83% and 75% for the 3D reference images. The gradient method achieved an average DSC of 72% and 51% for nucleus and cytoplasm segmentation for the 2D reference images and 71% and 51% for the 3D reference images. The DSC of cytoplasm segmentation was significantly lower than for the nucleus since the cytoplasm was not differentiated as well by image intensity from the background.

  7. Contributed Review: Optical micro- and nanofiber pulling rig

    NASA Astrophysics Data System (ADS)

    Ward, J. M.; Maimaiti, A.; Le, Vu H.; Chormaic, S. Nic

    2014-11-01

    We review the method of producing adiabatic optical micro- and nanofibers using a hydrogen/oxygen flame brushing technique. The flame is scanned along the fiber, which is being simultaneously stretched by two translation stages. The tapered fiber fabrication is reproducible and yields highly adiabatic tapers with either exponential or linear profiles. Details regarding the setup of the flame brushing rig and the various parameters used are presented. Information available from the literature is compiled and further details that are necessary to have a functioning pulling rig are included. This should enable the reader to fabricate various taper profiles, while achieving adiabatic transmission of ˜99% for fundamental mode propagation. Using this rig, transmissions ranging from 85% to 95% for higher order modes in an optical nanofiber have been obtained.

  8. Micro-size optical fibre strain interrogation system

    NASA Astrophysics Data System (ADS)

    Mrad, Nezih; Xiao, Gaozhi; Guo, Honglei

    2008-03-01

    Within several countries, the military is undergoing significant economic pressure to extend the use of its air fleet beyond its established design life. The availability of low weight, small size, reliable and cost-effective technologies to detect and monitor incipient damage and to alert prior to catastrophic failures is critical to sustain operational effectiveness. To enable the implementation of distributed and highly multiplexed optical fiber sensors networks to aerospace platforms, the data acquisition (interrogation) system has to meet small size and low weight requirements. This paper reports on our current development of micro-sized Echelle Diffractive Gratings (EDG) based interrogation system for strain monitoring of serially multiplexed fibre Bragg grating sensors. The operation principle of the interrogator and its suitability for strain measurements is demonstrated. Static load measurements obtained using this system are compared to those acquired using a optical multi-wavelength meter and are found to have strong correlation.

  9. Micro-optics: enabling technology for illumination shaping in optical lithography

    NASA Astrophysics Data System (ADS)

    Voelkel, Reinhard

    2014-03-01

    Optical lithography has been the engine that has empowered semiconductor industry to continually reduce the half-pitch for over 50 years. In early mask aligners a simple movie lamp was enough to illuminate the photomask. Illumination started to play a more decisive role when proximity mask aligners appeared in the mid-1970s. Off-axis illumination was introduced to reduce diffraction effects. For early projection lithography systems (wafer steppers), the only challenge was to collect the light efficiently to ensure short exposure time. When projection optics reached highest level of perfection, further improvement was achieved by optimizing illumination. Shaping the illumination light, also referred as pupil shaping, allows the optical path from reticle to wafer to be optimized and thus has a major impact on aberrations and diffraction effects. Highly-efficient micro-optical components are perfectly suited for this task. Micro-optics for illumination evolved from simple flat-top (fly's-eye) to annular, dipole, quadrupole, multipole and freeform illumination. Today, programmable micro-mirror arrays allow illumination to be changed on the fly. The impact of refractive, diffractive and reflective microoptics for photolithography will be discussed.

  10. Fundamentals and recent advances in X-ray micro computed tomography (microCT) applied on thermal-fluid dynamics and multiphase flows

    NASA Astrophysics Data System (ADS)

    Santini, Maurizio

    2015-11-01

    X-ray computed tomography (CT) is a well-known technique nowadays, since its first practical application by Sir. G. Hounsfield (Nobel price for medicine 1979) has continually benefited from optimising improvements, especially in medical applications. Indeed, also application of CT in various engineering research fields provides fundamental informations on a wide range of applications, considering that the technique is not destructive, allowing 3D visualization without perturbation of the analysed material. Nowadays, it is technologically possible to design and realize an equipment that achieve a micrometric resolution and even improve the sensibility in revealing differences in materials having very radiotransparency, allowing i.e. to distinguish between different fluids (with different density) or states of matter (like with two-phase flows). At the University of Bergamo, a prototype of an X-ray microCT system was developed since 2008, so being fully operative from 2012, with specific customizations for investigations in thermal-fluid dynamics and multiphase flow researches. A technical session held at the UIT International Conference in L'Aquila (Italy), at which this paper is referring, has presented some microCT fundamentals, to allow the audience to gain basics to follow the “fil-rouge” that links all the instrumentation developments, till the recent applications. Hereinafter are reported some applications currently developed at Bergamo University at the X-ray computed micro-tomography laboratory.

  11. Contrast agent comparison for three-dimensional micro-CT angiography: A cadaveric study.

    PubMed

    Kingston, Mitchell J; Perriman, Diana M; Neeman, Teresa; Smith, Paul N; Webb, Alexandra L

    2016-07-01

    Barium sulfate and lead oxide contrast media are frequently used for cadaver-based angiography studies. These contrast media have not previously been compared to determine which is optimal for the visualisation and measurement of blood vessels. In this study, the lower limb vessels of 16 embalmed Wistar rats, and four sets of cannulae of known diameter, were injected with one of three different contrast agents (barium sulfate and resin, barium sulfate and gelatin, and lead oxide combined with milk powder). All were then scanned using micro-computed tomography (CT) angiography and 3-D reconstructions generated. The number of branching generations of the rat lower limb vessels were counted and compared between the contrast agents using ANOVA. The diameter of the contrast-filled cannulae, were measured and used to calculate the accuracy of the measurements by comparing the bias and variance of the estimates. Intra- and inter-observer reliability were calculated using intra-class correlation coefficients. There was no significant difference (mean difference [MD] 0.05; MD 95% confidence interval [CI] -0.83 to 0.93) between the number of branching generations for barium sulfate-resin and lead oxide-milk powder. Barium sulfate-resin demonstrated less bias and less variance of the estimates (MD 0.03; standard deviation [SD] 1.96 mm) compared to lead oxide-milk powder (MD 0.11; SD 1.96 mm) for measurements of contrast-filled cannulae scanned at high resolution. Barium sulfate-resin proved to be more accurate than lead oxide-milk powder for high resolution micro-CT scans and is preferred due to its non-toxicity. This technique could be applied to any embalmed specimen model. Copyright © 2016 John Wiley & Sons, Ltd. PMID:27075920

  12. Airway and pulmonary vascular measurements using contrast-enhanced micro-CT in rodents.

    PubMed

    Counter, W B; Wang, I Q; Farncombe, T H; Labiris, N R

    2013-06-15

    Preclinical imaging allows pulmonary researchers to study lung disease and pulmonary drug delivery noninvasively and longitudinally in small animals. However, anatomically localizing a pathology or drug deposition to a particular lung region is not easily done. Thus, a detailed knowledge of the anatomical structure of small animal lungs is necessary for understanding disease progression and in addition would facilitate the analysis of the imaging data, mapping drug deposition and relating function to structure. In this study, contrast-enhanced micro-computed tomography (CT) of the lung produced high-resolution images that allowed for the characterization of the rodent airway and pulmonary vasculature. Contrast-enhanced micro-CT was used to visualize the airways and pulmonary vasculature in Sprague-Dawley rats (200-225 g) and BALB/c mice (20-25 g) postmortem. Segmented volumes from these images were processed to yield automated measurements of the airways and pulmonary vasculature. The diameters, lengths, and branching angles of the airway, arterial, and venous trees were measured and analyzed as a function of generation number and vessel diameter to establish rules that could be applied at all levels of tree hierarchy. In the rat, airway, arterial, and venous tress were measured down to the 20th, 16th, and 14th generation, respectively. In the mouse, airway, arterial, and venous trees were measured down to the 16th, 8th, and 7th generation, respectively. This structural information, catalogued in a rodent database, will increase our understanding of lung structure and will aid in future studies of the relationship between structure and function in animal models of disease. PMID:23564512

  13. Modulation transfer function determination using the edge technique for cone-beam micro-CT

    NASA Astrophysics Data System (ADS)

    Rong, Junyan; Liu, Wenlei; Gao, Peng; Liao, Qimei; Lu, Hongbing

    2016-03-01

    Evaluating spatial resolution is an essential work for cone-beam computed tomography (CBCT) manufacturers, prototype designers or equipment users. To investigate the cross-sectional spatial resolution for different transaxial slices with CBCT, the slanted edge technique with a 3D slanted edge phantom are proposed and implemented on a prototype cone-beam micro-CT. Three transaxial slices with different cone angles are under investigation. An over-sampled edge response function (ERF) is firstly generated from the intensity of the slightly tiled air to plastic edge in each row of the transaxial reconstruction image. Then the oversampled ESF is binned and smoothed. The derivative of the binned and smoothed ERF gives the line spread function (LSF). At last the presampled modulation transfer function (MTF) is calculated by taking the modulus of the Fourier transform of the LSF. The spatial resolution is quantified with the spatial frequencies at 10% MTF level and full-width-half-maximum (FWHM) value. The spatial frequencies at 10% of MTFs are 3.1+/-0.08mm-1, 3.0+/-0.05mm-1, and 3.2+/-0.04mm-1 for the three transaxial slices at cone angles of 3.8°, 0°, and -3.8° respectively. The corresponding FWHMs are 252.8μm, 261.7μm and 253.6μm. Results indicate that cross-sectional spatial resolution has no much differences when transaxial slices being 3.8° away from z=0 plane for the prototype conebeam micro-CT.

  14. Individualised, micro CT-based finite element modelling as a tool for biomechanical analysis related to tissue engineering of bone.

    PubMed

    Jaecques, S V N; Van Oosterwyck, H; Muraru, L; Van Cleynenbreugel, T; De Smet, E; Wevers, M; Naert, I; Vander Sloten, J

    2004-04-01

    Load-bearing tissues, like bone, can be replaced by engineered tissues or tissue constructs. For the success of this treatment, a profound understanding is needed of the mechanical properties of both the native bone tissue and the construct. Also, the interaction between mechanical loading and bone regeneration and adaptation should be well understood. This paper demonstrates that microfocus computer tomography (microCT) based finite element modelling (FEM) can have an important contribution to the field of functional bone engineering as a biomechanical analysis tool to quantify the stress and strain state in native bone tissue and in tissue constructs. Its value is illustrated by two cases: (1) in vivo microCT-based FEM for the analysis of peri-implant bone adaptation and (2) design of biomechanically optimised bone scaffolds. The first case involves a combined animal experimental and numerical study, in which the peri-implant bone adaptive response is monitored by means of in vivo microCT scanning. In the second case microCT-based finite element models were created of native trabecular bone and bone scaffolds and a mechanical analysis of both structures was performed. Procedures to optimise the mechanical properties of bone scaffolds, in relation to those of native trabecular bone are discussed. PMID:14697870

  15. Laser figuring for the generation of analog micro-optics and kineform surfaces

    NASA Technical Reports Server (NTRS)

    Gratrix, Edward J.

    1993-01-01

    To date, there have been many techniques used to generate micro-optic structures in glass or other materials. Using methods common to the lithographic industry, the manufacturing technique known as 'binary optics,' has demonstrated the use of diffractive optics in a variety of micro-optic applications. It is well established that diffractive structures have limited capability when applied in a design more suited for a refractive element. For applications that demand fast, highly efficient, broadband designs, we have developed a technique which uses laser figuring to generate the refractive micro-optical surface. This paper describes the technique used to fabricate refractive micro-optics. Recent results of micro-optics in CdZnTe focal planes are shown.

  16. Optical Readout of Micro-Accelerometer Code Features

    SciTech Connect

    Dickey, Fred M.; Holswade, Scott C.; Polosky, Marc A.; Shagam, Richard N.; Sullivan, Charles T.

    1999-07-08

    Micromachine accelerometers offer a way to enable critical functions only when a system encounters a particular acceleration environment. This paper describes the optical readout of a surface micromachine accelerometer containing a unique 24-bit code. The readout uses waveguide-based optics, which are implemented as a photonic integrated circuit (PIC). The PIC is flip-chip bonded over the micromachine, for a compact package. The shuttle moves 500 {micro}m during readout, and each code element is 17 {micro}m wide. The particular readout scheme makes use of backscattered radiation from etched features in the accelerometer shuttle. The features are etched to create corner reflectors that return radiation back toward the source for a one bit. For a zero bit, the shuttle is not etched, and the radiation scatters forward, away from the detector. This arrangement provides a large signal difference between a one and zero signal, since the zero signal returns virtually no signal to the detector. It is thus superior to schemes that interrogate the code vertically, which have a limited contrast between a one and a zero. Experimental results are presented for mock shuttle features etched into a silicon substrate. To simulate the shuttle moving under a fixed PIC, a commercially available waveguide source was scanned over the mock code.

  17. Optical Oxygen Micro- and Nanosensors for Plant Applications

    PubMed Central

    Ast, Cindy; Schmälzlin, Elmar; Löhmannsröben, Hans-Gerd; van Dongen, Joost T.

    2012-01-01

    Pioneered by Clark's microelectrode more than half a century ago, there has been substantial interest in developing new, miniaturized optical methods to detect molecular oxygen inside cells. While extensively used for animal tissue measurements, applications of intracellular optical oxygen biosensors are still scarce in plant science. A critical aspect is the strong autofluorescence of the green plant tissue that interferes with optical signals of commonly used oxygen probes. A recently developed dual-frequency phase modulation technique can overcome this limitation, offering new perspectives for plant research. This review gives an overview on the latest optical sensing techniques and methods based on phosphorescence quenching in diverse tissues and discusses the potential pitfalls for applications in plants. The most promising oxygen sensitive probes are reviewed plus different oxygen sensing structures ranging from micro-optodes to soluble nanoparticles. Moreover, the applicability of using heterologously expressed oxygen binding proteins and fluorescent proteins to determine changes in the cellular oxygen concentration are discussed as potential non-invasive cellular oxygen reporters. PMID:22969334

  18. Raman microspectroscopy of optically trapped micro- and nanoobjects

    NASA Astrophysics Data System (ADS)

    Jonáš, Alexandr; Ježek, Jan; Šerý, Mojmír; Zemánek, Pavel

    2008-12-01

    We describe and characterize an experimental system for Raman microspectroscopy of micro- and nanoobjects optically trapped in aqueous suspensions with the use of a single-beam gradient optical trap (Raman tweezers). This system features two separate lasers providing light for the optical trapping and excitation of the Raman scattering spectra from the trapped specimen, respectively. Using independent laser beams for trapping and spectroscopy enables optimizing the parameters of both beams for their respective purposes. Moreover, it is possible to modulate the position of the trapped object relative to the Raman beam focus for maximizing the detected Raman signal and obtaining spatially resolved images of the trapped specimen. Using this experimental system, we have obtained Raman scattering spectra of individual optically confined micron and sub-micron sized polystyrene beads and baker's yeast cells. Sufficiently high signal-to-noise ratio of the spectra could be achieved using a few tens of milliwatts of the Raman beam power and detector integration times on the order of seconds.

  19. Optical Levitation of Micro-Scale Particles in Air

    NASA Technical Reports Server (NTRS)

    Wrbanek, Susan Y.; Weiland, Kenneth E.

    2004-01-01

    Success has been achieved using a radiation pressure gradient to levitate microscale particles in air for as long as four hours. This work is performed as a precursor to the development of a vacuum based optical tweezers interrogation tool for nanotechnology research. It was decided to first proceed with solving the problem of achieving optical levitation of a micro-scale particle in air before trying the same in a vacuum environment. This successful optical levitation in air confirms the work of Ashkin and Dziedzic. Levitation of 10 and 13.8 microns diameter polystyrene spheres was achieved, as well as the levitation of 10 and 100 microns diameter glass spheres. Particles were raised and lowered. A modicum of success was achieved translating particles horizontally. Trapping of multiple particles in one laser beam has been photographed. Also, it has been observed that particles, that may be conglomerates or irregular in shape, can also be trapped by a focused laser beam. Levitated glass beads were photographed using laser light scattered from the beads. The fact that there is evidence of optical traps in air containing irregular and conglomerate particles provides hope that future tool particles need not be perfect spheres.

  20. Active investigation of material damage under load using micro-CT

    NASA Astrophysics Data System (ADS)

    Navalgund, Megha; Zunjarrao, Suraj; Mishra, Debasish; Manoharan, V.

    2015-03-01

    Due the growth of composite materials across multiple industries such as Aviation, Wind there is an increasing need to not just standardize and improve manufacturing processes but also to design these materials for the specific applications. One of the things that this translates to is understanding how failure initiates and grows in these materials and at what loads, especially around internal flaws such as voids or features such as ply drops. Traditional methods of investigating internal damage such as CT lack the resolution to resolve ply level damage in composites. Interrupted testing with layer removal can be used to investigate internal damage using microscopy; however this is a destructive method. Advanced techniques such as such as DIC are useful for in-situ damage detection, however are limited to surface information and would not enable interrogating the volume. Computed tomography has become a state of the art technique for metrology and complete volumetric investigation especially for metallic components. However, its application to the composite world is still nascent. This paper demonstrates micro-CT's capability as a gauge to quantitatively estimate the extent of damage & understand the propagation of damage in PMC composites while the component is under stress.

  1. Imaging the Aqueous Humor Outflow Pathway in Human Eyes by Three-dimensional Micro-computed Tomography (3D micro-CT)

    SciTech Connect

    C Hann; M Bentley; A Vercnocke; E Ritman; M Fautsch

    2011-12-31

    The site of outflow resistance leading to elevated intraocular pressure in primary open-angle glaucoma is believed to be located in the region of Schlemm's canal inner wall endothelium, its basement membrane and the adjacent juxtacanalicular tissue. Evidence also suggests collector channels and intrascleral vessels may have a role in intraocular pressure in both normal and glaucoma eyes. Traditional imaging modalities limit the ability to view both proximal and distal portions of the trabecular outflow pathway as a single unit. In this study, we examined the effectiveness of three-dimensional micro-computed tomography (3D micro-CT) as a potential method to view the trabecular outflow pathway. Two normal human eyes were used: one immersion fixed in 4% paraformaldehyde and one with anterior chamber perfusion at 10 mmHg followed by perfusion fixation in 4% paraformaldehyde/2% glutaraldehyde. Both eyes were postfixed in 1% osmium tetroxide and scanned with 3D micro-CT at 2 {mu}m or 5 {mu}m voxel resolution. In the immersion fixed eye, 24 collector channels were identified with an average orifice size of 27.5 {+-} 5 {mu}m. In comparison, the perfusion fixed eye had 29 collector channels with a mean orifice size of 40.5 {+-} 13 {mu}m. Collector channels were not evenly dispersed around the circumference of the eye. There was no significant difference in the length of Schlemm's canal in the immersed versus the perfused eye (33.2 versus 35.1 mm). Structures, locations and size measurements identified by 3D micro-CT were confirmed by correlative light microscopy. These findings confirm 3D micro-CT can be used effectively for the non-invasive examination of the trabecular meshwork, Schlemm's canal, collector channels and intrascleral vasculature that comprise the distal outflow pathway. This imaging modality will be useful for non-invasive study of the role of the trabecular outflow pathway as a whole unit.

  2. High-resolution three-dimensional visualization of the rat spinal cord microvasculature by synchrotron radiation micro-CT

    SciTech Connect

    Hu, Jianzhong; Cao, Yong; Wu, Tianding; Li, Dongzhe; Lu, Hongbin

    2014-10-15

    Purpose: Understanding the three-dimensional (3D) morphology of the spinal cord microvasculature has been limited by the lack of an effective high-resolution imaging technique. In this study, synchrotron radiation microcomputed tomography (SRµCT), a novel imaging technique based on absorption imaging, was evaluated with regard to the detection of the 3D morphology of the rat spinal cord microvasculature. Methods: Ten Sprague-Dawley rats were used in this ex vivo study. After contrast agent perfusion, their spinal cords were isolated and scanned using conventional x-rays, conventional micro-CT (CµCT), and SRµCT. Results: Based on contrast agent perfusion, the microvasculature of the rat spinal cord was clearly visualized for the first time ex vivo in 3D by means of SRµCT scanning. Compared to conventional imaging techniques, SRµCT achieved higher resolution 3D vascular imaging, with the smallest vessel that could be distinguished approximately 7.4 μm in diameter. Additionally, a 3D pseudocolored image of the spinal cord microvasculature was generated in a single session of SRµCT imaging, which was conducive to detailed observation of the vessel morphology. Conclusions: The results of this study indicated that SRµCT scanning could provide higher resolution images of the vascular network of the spinal cord. This modality also has the potential to serve as a powerful imaging tool for the investigation of morphology changes in the 3D angioarchitecture of the neurovasculature in preclinical research.

  3. In Vivo Small Animal Imaging using Micro-CT and Digital Subtraction Angiography

    PubMed Central

    Badea, C.T.; Drangova, M.; Holdsworth, D.W.; Johnson, G.A.

    2009-01-01

    Small animal imaging has a critical role in phenotyping, drug discovery, and in providing a basic understanding of mechanisms of disease. Translating imaging methods from humans to small animals is not an easy task. The purpose of this work is to review in vivo X-ray based small animal imaging, with a focus on in vivo micro-computed tomography (micro-CT) and digital subtraction angiography (DSA). We present the principles, technologies, image quality parameters and types of applications. We show that both methods can be used not only to provide morphological, but also functional information, such as cardiac function estimation or perfusion. Compared to other modalities, x-ray based imaging is usually regarded as being able to provide higher throughput at lower cost and adequate resolution. The limitations are usually associated with the relatively poor contrast mechanisms and potential radiation damage due to ionizing radiation, although the use of contrast agents and careful design of studies can address these limitations. We hope that the information will effectively address how x-ray based imaging can be exploited for successful in vivo preclinical imaging. PMID:18758005

  4. Computational Aerodynamic Analysis of a Micro-CT Based Bio-Realistic Fruit Fly Wing

    PubMed Central

    Brandt, Joshua; Doig, Graham; Tsafnat, Naomi

    2015-01-01

    The aerodynamic features of a bio-realistic 3D fruit fly wing in steady state (snapshot) flight conditions were analyzed numerically. The wing geometry was created from high resolution micro-computed tomography (micro-CT) of the fruit fly Drosophila virilis. Computational fluid dynamics (CFD) analyses of the wing were conducted at ultra-low Reynolds numbers ranging from 71 to 200, and at angles of attack ranging from -10° to +30°. It was found that in the 3D bio-realistc model, the corrugations of the wing created localized circulation regions in the flow field, most notably at higher angles of attack near the wing tip. Analyses of a simplified flat wing geometry showed higher lift to drag performance values for any given angle of attack at these Reynolds numbers, though very similar performance is noted at -10°. Results have indicated that the simplified flat wing can successfully be used to approximate high-level properties such as aerodynamic coefficients and overall performance trends as well as large flow-field structures. However, local pressure peaks and near-wing flow features induced by the corrugations are unable to be replicated by the simple wing. We therefore recommend that accurate 3D bio-realistic geometries be used when modelling insect wings where such information is useful. PMID:25954946

  5. Taxonomy and nomenclature of some mainland SE-Asian Coeliccia species (Odonata, Platycnemididae) using micro-CT analysis.

    PubMed

    Steinhoff, Philip O M; Uhl, Gabriele

    2015-01-01

    The taxonomic status of some mainland Southeast Asian Coeliccia species is evaluated. The following synonymies are presented: C. acco is a junior synonym of C. pyriformis; C. tomokunii that of C. scutellum; C.onoi that of C. cyanomelas. C. scutellum hainanense is promoted to species level, C. hainanense. Redescriptions of the holotype of C. pyriformis and of the lectotypes of C. scutellum and C. hainanense are presented with illustrations. The male genital ligulae were examined by means of non-destructive X-ray micro-computed tomography (micro-CT) and subsequent 3D-reconstruction. The advantage of virtual types generated by micro-CT analysis, particularly for the examination of internal structures, is discussed. PMID:26701563

  6. Micro-optics for high-efficiency optical performance and simplified tracking for concentrated photovoltaics (CPV).

    SciTech Connect

    Sinclair, Michael B.; Filatov, Anton; Lentine, Anthony L.; Sweatt, William C.; Nielson, Gregory N.; Okandan, Murat; Jared, Bradley Howell

    2010-02-01

    Micro-optical 5mm lenses in 50mm sub-arrays illuminate arrays of photovoltaic cells with 49X concentration. Fine tracking over {+-}10{sup o} FOV in sub-array allows coarse tracking by meter-sized solar panels. Plastic prototype demonstrated for 400nm < {lambda} < 1600 nm. We have designed a solar collector that will be composed of 50-mm-diameter sub-arrays, each containing {approx}100 5-mm plastic micro-lenses. Each micro-lens illuminates a stack of about four 0.7mm PV cells that collect sunlight from 400nm to 1600 nm with a theoretical efficiency approaching 50%. Each sub-array has internal solar tracking and alignment over a {+-}10{sup o} field, so a large array of sub-arrays only needs to coarsely track the sun. The refractive lenses in the design are thin so the optical transmission can be >90% and the optics will weigh very little. There are other optical properties incorporated in this design that help the photovoltaic cells to operate very efficiently. We are building a pre-prototype system now, and will describe our progress at the conference.

  7. Lateral translation micro-tracking of planar micro-optic solar concentrator

    NASA Astrophysics Data System (ADS)

    Hallas, Justin M.; Karp, Jason H.; Tremblay, Eric J.; Ford, Joseph E.

    2010-08-01

    High-concentration photo-voltaic systems focus incident sunlight by hundreds of times by combining focusing lenses with accurate, dual-axis solar tracking. Conventional systems mount large optical arrays on expensive tracking pedestals to maintain normal incidence throughout the day. A recently proposed micro-optic solar concentrator utilizes a twodimensional lens array focusing into a planar slab waveguide. Localized mirrors fabricated on the waveguide surface reflect focused sunlight into guided modes which propagate towards an edge-mounted photovoltaic cell. This geometry enables a new method of solar tracking by laterally translating the waveguide with respect to the lens array to capture off-axis illumination. Using short focal length lenses, translations on the order of millimeters can efficiently collect 70° full-angle incident fields. This allows for either one or two-axis tracking systems where the small physical motion is contained within the physical footprint of a fixed solar panel. Here, we experimentally demonstrate lateral micro tracking for off-axis light collection using table-mounted components. We also present a novel tracking frame based on de-centered cams and describe a lens configuration optimized for off-axis coupling.

  8. Micro-CT Pore Scale Study Of Flow In Porous Media: Effect Of Voxel Resolution

    NASA Astrophysics Data System (ADS)

    Shah, S.; Gray, F.; Crawshaw, J.; Boek, E.

    2014-12-01

    In the last few years, pore scale studies have become the key to understanding the complex fluid flow processes in the fields of groundwater remediation, hydrocarbon recovery and environmental issues related to carbon storage and capture. A pore scale study is often comprised of two key procedures: 3D pore scale imaging and numerical modelling techniques. The essence of a pore scale study is to test the physics implemented in a model of complicated fluid flow processes at one scale (microscopic) and then apply the model to solve the problems associated with water resources and oil recovery at other scales (macroscopic and field). However, the process of up-scaling from the pore scale to the macroscopic scale has encountered many challenges due to both pore scale imaging and modelling techniques. Due to the technical limitations in the imaging method, there is always a compromise between the spatial (voxel) resolution and the physical volume of the sample (field of view, FOV) to be scanned by the imaging methods, specifically X-ray micro-CT (XMT) in our case In this study, a careful analysis was done to understand the effect of voxel size, using XMT to image the 3D pore space of a variety of porous media from sandstones to carbonates scanned at different voxel resolution (4.5 μm, 6.2 μm, 8.3 μm and 10.2 μm) but keeping the scanned FOV constant for all the samples. We systematically segment the micro-CT images into three phases, the macro-pore phase, an intermediate phase (unresolved micro-pores + grains) and the grain phase and then study the effect of voxel size on the structure of the macro-pore and the intermediate phases and the fluid flow properties using lattice-Boltzmann (LB) and pore network (PN) modelling methods. We have also applied a numerical coarsening algorithm (up-scale method) to reduce the computational power and time required to accurately predict the flow properties using the LB and PN method.

  9. Estimation of measuring uncertainty for optical micro-coordinate measuring machine

    NASA Astrophysics Data System (ADS)

    Song, Kang; Jiang, Zhuangde

    2004-12-01

    Based on the evaluation principle of the measuring uncertainty of the traditional coordinate measuring machine (CMM), the analysis and evaluation of the measuring uncertainty for optical micro-CMM have been made. Optical micro-CMM is an integrated measuring system with optical, mechanical, and electronic components, which may influence the measuring uncertainty of the optical micro-CMM. If the influence of laser speckle is taken into account, its longitudinal measuring uncertainty is 2.0 ?m, otherwise it is 0.88 ?m. It is proved that the estimation of the synthetic uncertainty for optical micro-CMM is correct and reliable by measuring the standard reference materials and simulating the influence of the diameter of laser beam. With Heisenberg's uncertainty principle and quantum mechanics theory, a method for improving the measuring accuracy of optical micro-CMM through adding a diaphragm in the receiving terminal of the light path was proposed, and the measuring results are verified by experiments.

  10. Applications of Non-Imaging Micro-Optic Systems

    NASA Astrophysics Data System (ADS)

    Baker, Katherine Anne

    While imaging optics necessarily transmit a clear image of an object, non-imaging optics manipulate light in many different ways. Two important applications are illumination and concentration. In this thesis, I cover an application in each of these areas involving small-scale optics. Extremely low birth weight infants typically require intubation, but existing laryngoscopes for viewing the airway are not suited to this population. Small commercial cameras can fit within the required geometry, but need high illumination with low heating. Repurposing the mechanical structure of the laryngoscope as a waveguide for an LED source meets both these requirements. Concentrator photovoltaic systems accept sunlight over a large aperture and focus it to a proportionally small photovoltaic cell. This kind of configuration allows the cost of expensive but highly efficient multijunction cells to be amortized over a large area module, resulting in cost-effective, high efficiency systems. A prior design from our lab uses a lenslet array and mirrored micro-prisms to concentrate sunlight within a glass waveguide. This enables high efficiency concentration with a compact form factor compatible with mass fabrication and eliminating problems associated with discrete PV cells. I first adapt the basic planar concentrator design for specific applications. One-dimensional polar tracking is an attractive design space, and either passive optical tracking or mechanical micro-tracking can be used to adapt the concentrator for this framework. The concentrator can also be used in solar thermal rather than photovoltaic applications with the addition of an output coupler. I also address a completely different approach to concentrator tracking. This non-imaging system is nonlinear, implementing a reactive cladding layer to enable the system to self-track the sun. I present design studies to quantify the requirements of such a material, then present a candidate materials system to meet these

  11. Optical micro-bubble resonators as promising biosensors

    NASA Astrophysics Data System (ADS)

    Giannetti, A.; Barucci, A.; Berneschi, S.; Cosci, A.; Cosi, F.; Farnesi, D.; Nunzi Conti, G.; Pelli, S.; Soria, S.; Tombelli, S.; Trono, C.; Righini, G. C.; Baldini, F.

    2015-05-01

    Recently, optical micro-bubble resonators (OMBRs) have gained an increasing interest in many fields of photonics thanks to their particular properties. These hollow microstructures can be suitable for the realization of label - free optical biosensors by combining the whispering gallery mode (WGM) resonator properties with the intrinsic capability of integrated microfluidics. In fact, the WGMs are morphology-dependent modes: any change on the OMBR inner surface (due to chemical and/or biochemical binding) causes a shift of the resonance position and reduces the Q factor value of the cavity. By measuring this shift, it is possible to obtain information on the concentration of the analyte to be detected. A crucial step for the development of an OMBR-based biosensor is constituted by the functionalization of its inner surface. In this work we report on the development of a physical and chemical process able to guarantee a good homogeneity of the deposed bio-layer and, contemporary, to preserve a high quality factor Q of the cavity. The OMBR capability of working as bioassay was proved by different optical techniques, such as the real time measurement of the resonance broadening after each functionalization step and fluorescence microscopy.

  12. Micro particle launcher/cleaner based on optical trapping technology.

    PubMed

    Liu, Zhihai; Liang, Peibo; Zhang, Yu; Zhang, Yaxun; Zhao, Enming; Yang, Jun; Yuan, Libo

    2015-04-01

    Efficient and controllable launching function of an optical tweezers is a challenging task. We present and demonstrate a novel single fiber optical tweezers which can trap and launch (clean) a target polystyrene (PS) microsphere (diameter~10μm) with independent control by using two wavelengths beams: 980nm and 1480nm. We employ 980nm laser beam to trap the target PS microsphere by molding the fiber tip into a special tapered-shape; and we employ 1480nm laser beam to launch the trapped PS microsphere with a certain velocity by using the thermophoresis force generated from the thermal effect due to the high absorption of the 1480nm laser beams in water. When the launching force is smaller than the trapping force, the PS microsphere will be trapped near the fiber tip, and the launching force will blow away other PS microspheres in the workspace realizing the cleaning function; When the launching force is larger than the trapping force, the trapped PS microsphere will be launched away from the fiber tip with a certain velocity and towards a certain direction, realizing the launching function. The launching velocity, acceleration and the distance can be measured by detecting the interference signals generated from the PS microsphere surface and the fiber tip end-face. This PS microsphere launching and cleaning functions expanded new features of single fiber optical tweezers, providing for the possibility of more practical applications in the micro manipulation research fields. PMID:25968703

  13. Optical and thermal characterization on micro-optical elements made by femtosecond laser writing

    NASA Astrophysics Data System (ADS)

    Buividas, R.; Mizeikis, V.; Kiršanske, G.; Žukauskas, A.; Malinauskas, M.; Murayama, T.; Hikima, Y.; Morikawa, J.; Juodkazis, S.

    2013-12-01

    Femtosecond laser polymerization of photonic crystals (PhCs) and diffractive micro-optical elements which can be easily integrated into complex 3D geometries of micro-fluidic chips is analysed in IR spectral domain. Thermal properties of such 3D optical elements and patterns were investigated by thermal imaging, IR spectroscopy and a heat-wave method using absorption-heating with visible light. Thermal imaging allows a simple in situ judgement on a 3D fabrication quality of photonic crystals and is simpler compared with scanning electron imaging. Photonic stop gaps at IR spectral range were clearly observed and IR mapping at the specific spectral wavelength reveals spatial uniformity of PhCs. Potential to use IR imaging with spectral IR plasmonic filters for sensor applications is discussed.

  14. Three-Dimensional Quantification of Calcium Salt-Composite Resorption (CSC) In Vitro by Micro-computed Tomography (Micro-CT)

    NASA Astrophysics Data System (ADS)

    Winkler, T.; Dai, X. Y.; Mielke, G.; Vogt, S.; Buechner, H.; Schantz, J. T.; Harder, Y.; Machens, H. G.; Morlock, M. M.; Schilling, A. F.

    2014-04-01

    The commonly applied cell-based, two-dimensional (2D) in vitro resorption assays for biomaterials are limited in a variety of cases, including high initial roughness of material surface, uncontrollable solubilization (or resorption) of the entire material surface, or complex three-dimensional (3D) structure of the bioactive material itself. All these make the accurate assessment and successful selection of the optimal bone substitute material difficult. In vivo, micro-computed tomography (micro-CT) has been widely applied for the analysis of bone physiology and pathology, as well as for the 3D analysis of scaffolds for bone tissue engineering. In this study, we show that micro-CT can also be applied for the in vitro analysis of osteoclast-mediated resorption of biomaterials. For our experiments, we chose a calcium salt-composite (composite of calcium sulphate (CSC), calcium carbonate, glycerin-1,2,3-tripalmiate), which evades common 2D in vitro resorption analysis as a result of its high surface roughness and material composition. Human osteoclasts were differentiated from precursor cells on the surface of the material for 28 days. Cells were analyzed for expression of tartrate-resistant acid phosphatase 5b (TRAP5b), multinuclearity, and size. Volumetric analysis of resorption was performed by micro-CT. Multinucleated osteoclasts developed on the surface of the material. TRAP5b expression of the cells on CSC was comparable with TRAP5b expression of cells cultivated on dentin for the first 3 weeks of culture. At day 28, TRAP5b expression, cell number, and size of the TRAP+ cells were reduced on the CSC when compared with cells on dentin. Volumetric anaylsis by micro-CT showed a strong cellular effect on resorption of CSC. We consider micro-CT to be a promising technique for 3D quantification of cell-based resorption that will allow the study of cellular resorption of materials in vitro, which were up to now confined to animal experimental analysis.

  15. Micro-optical elements and optical materials of certain spider webs

    NASA Astrophysics Data System (ADS)

    Kane, D. M.; Naidoo, N.; Little, D. J.

    2012-06-01

    Certain spider webs are composed of several types of micro-optical elements made from transparent optical materials. The silks (radial and capture) are almost exclusively protein. The nearly cylindrical silks have diameters in the range 0.1 to several microns and cross-sectional morphology that is cylindrical-multi-layered,.as studied by transmission electron microscopy, The capture threads are coated with aqueous adhesive that also forms into nearly elliptical micro-lenses (adhesive droplets) mounted on the near cylindrical silks. The remaining elements of the web are the cement junctions tying the radial and the capture threads of the web together. These are irregularly shaped platelets. Progress to date on our research characterizing the optical properties and function of these transparent orb webs has been to interpret the reflection and transmission properties of the elements of the web, and the web as a whole, in natural lighting; to evaluate the optical finish of the surface of the silks and capture droplets; and to measure the principal refractive indices of radial silks using new immersion based methods developed for application to micron-sized, curved optical elements. Here we report the principal refractive indices, birefringence, dispersion and morphology of transparent spider silk subject to various chemical treatments. The morphology is measured using TEM. Insight into the physical origin of the refractive index properties will be discussed.

  16. A comparison of the thresholding strategies of micro-CT for periodontal bone loss: a pilot study

    PubMed Central

    Chang, P-C; Liang, K; Lim, JC; Chung, M-C; Chien, L-Y

    2013-01-01

    Objectives: Micro-CT provides three-dimensional details and has been widely used for biomedical assessments. This study aimed to determine the most appropriate threshold method for quantitatively assessing the dynamics of periodontal destruction. Methods: Inflammation was induced by submerging a silk ligature in the sulcus of the maxillary second molars of rats, and the animals were killed prior to ligature placement and after 7 and 21 days. The maxillae were examined for the bone resorptive activities by micro-CT, histology and tartrate-resistant acid phosphatase staining. The imaging threshold was determined by CT phantom, global and local algorithms. A bone fraction measurement from each threshold-determining technique was compared with histomorphometry. The reliability and reproducibility were examined by the intraclass correlation coefficient (ICC) and the coefficient of variation. Results: Significant reduction of inflammatory infiltration (p < 0.01) and active osteoclastic resorption (p < 0.05) from Day 7 to Day 21 were noted. High inter- and intraexaminer agreement were demonstrated in both histomorphometric and micro-CT assessments (ICC > 0.98). The algorithm-based technique demonstrated stronger correlation to histomorphometry than phantom-based thresholds, and the highest agreement was presented by the local algorithm (ICC > 0.96). This, however, was considerably computationally expensive. Conclusions: The local threshold-determining algorithm is suggested for examining inflammation-induced bone loss. Further investigation will be aimed at enhancing computational efficiency. PMID:22842634

  17. Rotational micro-CT using a clinical C-arm angiography gantry

    SciTech Connect

    Patel, V.; Hoffmann, K. R.; Ionita, C. N.; Keleshis, C.; Bednarek, D. R.; Rudin, S.

    2008-10-15

    Rotational angiography (RA) gantries are used routinely to acquire sequences of projection images of patients from which 3D renderings of vascular structures are generated using Feldkamp cone-beam reconstruction algorithms. However, these systems have limited resolution (<4 lp/mm). Micro-computed tomography (micro-CT) systems have better resolution (>10 lp/mm) but to date have relied either on rotating object imaging or small bore geometry for small animal imaging, and thus are not used for clinical imaging. The authors report here the development and use of a 3D rotational micro-angiography (RMA) system created by mounting a micro-angiographic fluoroscope (MAF) [35 {mu}m pixel, resolution >10 lp/mm, field of view (FOV)=3.6 cm] on a standard clinical FPD-based RA gantry (Infinix, Model RTP12303J-G9E, Toshiba Medical Systems Corp., Tustin, CA). RA image sequences are obtained using the MAF and reconstructed. To eliminate artifacts due to image truncation, lower-dose (compared to MAF acquisition) full-FOV (FFOV) FPD RA sequences (194 {mu}m pixel, FOV=20 cm) were also obtained to complete the missing data. The RA gantry was calibrated using a helical bead phantom. To ensure high-quality high-resolution reconstruction, the high-resolution images from the MAF were aligned spatially with the lower-dose FPD images, and the pixel values in the FPD image data were scaled to match those of the MAF. Images of a rabbit with a coronary stent placed in an artery in the Circle of Willis were obtained and reconstructed. The MAF images appear well aligned with the FPD images (average correlation coefficient before and after alignment: 0.65 and 0.97, respectively) Greater details without any visible truncation artifacts are seen in 3D RMA (MAF-FPD) images than in those of the FPD alone. The FWHM of line profiles of stent struts (100 {mu}m diameter) are approximately 192{+-}21 and 313{+-}38 {mu}m for the 3D RMA and FPD data, respectively. In addition, for the dual-acquisition 3D RMA

  18. Wafer-level micro-optics: trends in manufacturing, testing, packaging, and applications

    NASA Astrophysics Data System (ADS)

    Voelkel, Reinhard; Gong, Li; Rieck, Juergen; Zheng, Alan

    2012-11-01

    Micro-optics is an indispensable key enabling technology (KET) for many products and applications today. Probably the most prestigious examples are the diffractive light shaping elements used in high-end DUV lithography steppers. Highly efficient refractive and diffractive micro-optical elements are used for precise beam and pupil shaping. Micro-optics had a major impact on the reduction of aberrations and diffraction effects in projection lithography, allowing a resolution enhancement from 250 nm to 45 nm within the last decade. Micro-optics also plays a decisive role in medical devices (endoscopes, ophthalmology), in all laser-based devices and fiber communication networks (supercomputer, ROADM), bringing high-speed internet to our homes (FTTH). Even our modern smart phones contain a variety of micro-optical elements. For example, LED flashlight shaping elements, the secondary camera, and ambient light and proximity sensors. Wherever light is involved, micro-optics offers the chance to further miniaturize a device, to improve its performance, or to reduce manufacturing and packaging costs. Wafer-scale micro-optics fabrication is based on technology established by semiconductor industry. Thousands of components are fabricated in parallel on a wafer. We report on the state of the art in wafer-based manufacturing, testing, packaging and present examples and applications for micro-optical components and systems.

  19. Simultaneous multiple uniform spot generation with micro optics

    NASA Astrophysics Data System (ADS)

    Fruendt, J.; Jarczynski, M.; Mitra, T.

    2008-08-01

    Direct laser patterning of various materials is industrially implemented into several micro-system production lines such as inkjet printing, solar cell technology, flat-panel display production and medical engineering. In contrast to applications of single-mode sources, multi-mode lasers can provide very high power. This allows multi channel material processing and thus high operation speed if uniform light fields can be provided. Here within an illumination system is presented based on a high power multi-mode laser source that generates several uniform spots simultaneously without high stability requirements for the incoming laser source. These spots can be generated in various sizes and at various distances and can be located periodically and non-periodically. The concept consists of two beam processing steps: First the beam is homogenized by use of cylindrical micro-optic lens arrays. Secondly anamorphotic telecentric microoptic objectives split the beam into several uniform segments and image the spots onto the working plane. Because of LIMO's unique production technology the lens arrays can be optimized freely. It results in accurate dimensions and uniform intensity distributions for every single illuminated area. Field dimensions are only restricted by the diffraction limit. Applications could be direct material processing as well as mask illumination approaches.

  20. Integrated polymer micro-ring resonators for optical sensing applications

    NASA Astrophysics Data System (ADS)

    Girault, Pauline; Lorrain, Nathalie; Poffo, Luiz; Guendouz, Mohammed; Lemaitre, Jonathan; Carré, Christiane; Gadonna, Michel; Bosc, Dominique; Vignaud, Guillaume

    2015-03-01

    Micro-resonators (MR) have become a key element for integrated optical sensors due to their integration capability and their easy fabrication with low cost polymer materials. Nowadays, there is a growing need on MRs as highly sensitive and selective functions especially in the areas of food and health. The context of this work is to implement and study integrated micro-ring resonators devoted to sensing applications. They are fabricated by processing SU8 polymer as core layer and PMATRIFE polymer as lower cladding layer. The refractive index of the polymers and of the waveguide structure as a function of the wavelength is presented. Using these results, a theoretical study of the coupling between ring and straight waveguides has been undertaken in order to define the MR design. Sub-micronic gaps of 0.5 μm to 1 μm between the ring and the straight waveguides have been successfully achieved with UV (i-lines) photolithography. Different superstrates such as air, water, and aqueous solutions with glucose at different concentrations have been studied. First results show a good normalized transmission contrast of 0.98, a resonator quality factor around 1.5 × 104 corresponding to a coupling ratio of 14.7%, and ring propagation losses around 5 dB/cm. Preliminary sensing experiments have been performed for different concentrations of glucose; a sensitivity of 115 ± 8 nm/RIU at 1550 nm has been obtained with this couple of polymers.

  1. Wavelet based characterization of ex vivo vertebral trabecular bone structure with 3T MRI compared to microCT

    SciTech Connect

    Krug, R; Carballido-Gamio, J; Burghardt, A; Haase, S; Sedat, J W; Moss, W C; Majumdar, S

    2005-04-11

    Trabecular bone structure and bone density contribute to the strength of bone and are important in the study of osteoporosis. Wavelets are a powerful tool to characterize and quantify texture in an image. In this study the thickness of trabecular bone was analyzed in 8 cylindrical cores of the vertebral spine. Images were obtained from 3 Tesla (T) magnetic resonance imaging (MRI) and micro-computed tomography ({micro}CT). Results from the wavelet based analysis of trabecular bone were compared with standard two-dimensional structural parameters (analogous to bone histomorphometry) obtained using mean intercept length (MR images) and direct 3D distance transformation methods ({micro}CT images). Additionally, the bone volume fraction was determined from MR images. We conclude that the wavelet based analyses delivers comparable results to the established MR histomorphometric measurements. The average deviation in trabecular thickness was less than one pixel size between the wavelet and the standard approach for both MR and {micro}CT analysis. Since the wavelet based method is less sensitive to image noise, we see an advantage of wavelet analysis of trabecular bone for MR imaging when going to higher resolution.

  2. HECTOR: A 240kV micro-CT setup optimized for research

    NASA Astrophysics Data System (ADS)

    Masschaele, Bert; Dierick, Manuel; Van Loo, Denis; Boone, Matthieu N.; Brabant, Loes; Pauwels, Elin; Cnudde, Veerle; Van Hoorebeke, Luc

    2013-10-01

    X-ray micro-CT has become a very powerful and common tool for non-destructive three-dimensional (3D) visualization and analysis of objects. Many systems are commercially available, but they are typically limited in terms of operational freedom both from a mechanical point of view as well as for acquisition routines. HECTOR is the latest system developed by the Ghent University Centre for X-ray Tomography (http://www.ugct.ugent.be) in collaboration with X-Ray Engineering (XRE bvba, Ghent, Belgium). It consists of a mechanical setup with nine motorized axes and a modular acquisition software package and combines a microfocus directional target X-ray source up to 240 kV with a large flat-panel detector. Provisions are made to install a line-detector for a maximal operational range. The system can accommodate samples up to 80 kg, 1 m long and 80 cm in diameter while it is also suited for high resolution (down to 4 μm) tomography. The bi-directional detector tiling is suited for large samples while the variable source-detector distance optimizes the signal to noise ratio (SNR) for every type of sample, even with peripheral equipment such as compression stages or climate chambers. The large vertical travel of 1 m can be used for helical scanning and a vertical detector rotation axis allows laminography experiments. The setup is installed in a large concrete bunker to allow accommodation of peripheral equipment such as pumps, chillers, etc., which can be integrated in the modular acquisition software to obtain a maximal correlation between the environmental control and the CT data taken. The acquisition software does not only allow good coupling with the peripheral equipment but its scripting feature is also particularly interesting for testing new and exotic acquisition routines.

  3. Conversion of a Micro-CT Scanned Rock Fracture Into a Useful Model

    SciTech Connect

    Crandall, Dustin; Bromhal, Grant; Smith, Duane

    2009-01-01

    Within geologic reservoirs the flow of fluids through fractures is often orders of magnitude greater than through the surrounding, low-permeability rock. Because of the number and size of fractures in geological fields, reservoir-scale discrete-fracture simulators often model fluid motion through fractures as flow through narrow, parallel plates. In reality fractures within rock are narrow openings between two rough rock surfaces. In order to model the geometry of an actual fracture in rock, a ~9 cm by 2.5 cm fracture within Berea sandstone was created and the aperture distribution was obtained with micro-Computed Tomography (CT) scans by Karpyn et al. [1]. The original scans had a volume-pixel (voxel) resolution of 27 by 27 by 32 microns. This data was up-scaled to voxels with 120 microns to a side to facilitate data transfer and for practicality of use. Using three separate reconstruction techniques, six different fracture meshes were created from this up-scaled data set, each with slightly different final geometries. Flow through each of these fracture meshes was evaluated using the finite-volume simulator FLUENT. While certain features of the fracture meshes, such as the shape of the fracture aperture distributions and overall volume of the void, remained similar between the different geometric reconstructions, the flow in different models was observed to vary dramatically. Rough fracture walls induced more tortuous flow paths and a higher resistance to flow. Natural fractures do vary in-situ, due to sidewall dissolution and mineral precipitation, smoothing and coarsening fracture walls respectively. Thus for our study the range of fracture properties was actually beneficial, allowing us to describe the flow through a range of fracture types. A compromise between capturing the geometric details within a domain of interest and a tractable computational mesh must always be addressed when flow through a physical geometry is modeled. The fine level of detail that

  4. Characterization of a parallel-beam CCD optical-CT apparatus for 3D radiation dosimetry.

    PubMed

    Krstajić, Nikola; Doran, Simon J

    2007-07-01

    3D measurement of optical attenuation is of interest in a variety of fields of biomedical importance, including spectrophotometry, optical projection tomography (OPT) and analysis of 3D radiation dosimeters. Accurate, precise and economical 3D measurements of optical density (OD) are a crucial step in enabling 3D radiation dosimeters to enter wider use in clinics. Polymer gels and Fricke gels, as well as dosimeters not based around gels, have been characterized for 3D dosimetry over the last two decades. A separate problem is the verification of the best readout method. A number of different imaging modalities (magnetic resonance imaging (MRI), optical CT, x-ray CT and ultrasound) have been suggested for the readout of information from 3D dosimeters. To date only MRI and laser-based optical CT have been characterized in detail. This paper describes some initial steps we have taken in establishing charge coupled device (CCD)-based optical CT as a viable alternative to MRI for readout of 3D radiation dosimeters. The main advantage of CCD-based optical CT over traditional laser-based optical CT is a speed increase of at least an order of magnitude, while the simplicity of its architecture would lend itself to cheaper implementation than both MRI and laser-based optical CT if the camera itself were inexpensive enough. Specifically, we study the following aspects of optical metrology, using high quality test targets: (i) calibration and quality of absorbance measurements and the camera requirements for 3D dosimetry; (ii) the modulation transfer function (MTF) of individual projections; (iii) signal-to-noise ratio (SNR) in the projection and reconstruction domains; (iv) distortion in the projection domain, depth-of-field (DOF) and telecentricity. The principal results for our current apparatus are as follows: (i) SNR of optical absorbance in projections is better than 120:1 for uniform phantoms in absorbance range 0.3 to 1.6 (and better than 200:1 for absorbances 1.0 to

  5. Characterization of a parallel-beam CCD optical-CT apparatus for 3D radiation dosimetry

    NASA Astrophysics Data System (ADS)

    Krstajic, Nikola; Doran, Simon J.

    2007-07-01

    3D measurement of optical attenuation is of interest in a variety of fields of biomedical importance, including spectrophotometry, optical projection tomography (OPT) and analysis of 3D radiation dosimeters. Accurate, precise and economical 3D measurements of optical density (OD) are a crucial step in enabling 3D radiation dosimeters to enter wider use in clinics. Polymer gels and Fricke gels, as well as dosimeters not based around gels, have been characterized for 3D dosimetry over the last two decades. A separate problem is the verification of the best readout method. A number of different imaging modalities (magnetic resonance imaging (MRI), optical CT, x-ray CT and ultrasound) have been suggested for the readout of information from 3D dosimeters. To date only MRI and laser-based optical CT have been characterized in detail. This paper describes some initial steps we have taken in establishing charge coupled device (CCD)-based optical CT as a viable alternative to MRI for readout of 3D radiation dosimeters. The main advantage of CCD-based optical CT over traditional laser-based optical CT is a speed increase of at least an order of magnitude, while the simplicity of its architecture would lend itself to cheaper implementation than both MRI and laser-based optical CT if the camera itself were inexpensive enough. Specifically, we study the following aspects of optical metrology, using high quality test targets: (i) calibration and quality of absorbance measurements and the camera requirements for 3D dosimetry; (ii) the modulation transfer function (MTF) of individual projections; (iii) signal-to-noise ratio (SNR) in the projection and reconstruction domains; (iv) distortion in the projection domain, depth-of-field (DOF) and telecentricity. The principal results for our current apparatus are as follows: (i) SNR of optical absorbance in projections is better than 120:1 for uniform phantoms in absorbance range 0.3 to 1.6 (and better than 200:1 for absorbances 1.0 to

  6. Application of X-ray micro-CT for micro-structural characterization of APCVD deposited SiC coatings on graphite conduit.

    PubMed

    Agrawal, A K; Sarkar, P S; Singh, B; Kashyap, Y S; Rao, P T; Sinha, A

    2016-02-01

    SiC coatings are commonly used as oxidation protective materials in high-temperature applications. The operational performance of the coating depends on its microstructure and uniformity. This study explores the feasibility of applying tabletop X-ray micro-CT for the micro-structural characterization of SiC coating. The coating is deposited over the internal surface of pipe structured graphite fuel tube, which is a prototype of potential components of compact high-temperature reactor (CHTR). The coating is deposited using atmospheric pressure chemical vapor deposition (APCVD) and properties such as morphology, porosity, thickness variation are evaluated. Micro-structural differences in the coating caused by substrate distance from precursor inlet in a CVD reactor are also studied. The study finds micro-CT a potential tool for characterization of SiC coating during its future course of engineering. We show that depletion of reactants at larger distances causes development of larger pores in the coating, which affects its morphology, density and thickness. PMID:26722834

  7. A Preliminary Study on Sinus Fungus Ball with MicroCT and X-Ray Fluorescence Technique

    PubMed Central

    Jiang, Zidong; Zhang, Kai; Huang, Wanxia; Yuan, Qingxi

    2016-01-01

    Background Sinus fungus ball, an accumulation of fungal dense concretions, is a common disease in practice, and might cause fatal complications or lead to death once converted into invasive type. Early preoperative diagnosis of this disease can lead to appropriate treatment for patients and prevent multiple surgical procedures. Up to now, the diagnostic criteria of sinus fungus ball have been defined and computed tomography (CT) scan was considered as a valuable preoperative diagnostic tool. However, the sensitivity of clinical CT is only about 62%. Thus, investigating the factors which influence sensitivity is necessary for clinical CT to be a more valuable preoperative diagnosis tool. Furthermore, CT scan usually presents micro-calcifications or spots with metallic density in sinus fungus ball. Previous literatures show that there are some metallic elements such as calcium and zinc in fungus ball, and they concluded that endodontic treatment has a strong correlation with the development of maxillary sinus fungus ball and zinc ion was an exogenous risk factor. But the pathogenesis of sinus fungus ball still remains unclear because fungus ball can also develop in other non-maxillary sinuses or the maxillary sinus without root canal treatment. Is zinc ion the endogenous factor? Study on this point might be also helpful for investigating the pathogenesis of sinus fungus ball. In this paper, we tried to investigate the factors which influence the sensitivity of clinical CT by imaging sinus fungus ball with microCT. The origin of zinc ion was also studied through elements test for different fungal ball samples using x-ray fluorescence technique. Methods Specimens including fungal ball material and sinus mucosa from patients confirmed by pathological findings were extracted after surgery. All fungal ball specimens came from sphenoid sinus, ethmoidal sinus and maxillary sinus with or without previous endodontic treatment respectively. All of them were imaged by microCT

  8. Self-calibration of a cone-beam micro-CT system

    SciTech Connect

    Patel, V.; Chityala, R. N.; Hoffmann, K. R.; Ionita, C. N.; Bednarek, D. R.; Rudin, S.

    2009-01-15

    Use of cone-beam computed tomography (CBCT) is becoming more frequent. For proper reconstruction, the geometry of the CBCT systems must be known. While the system can be designed to reduce errors in the geometry, calibration measurements must still be performed and corrections applied. Investigators have proposed techniques using calibration objects for system calibration. In this study, the authors present methods to calibrate a rotary-stage CB micro-CT (CB{mu}CT) system using only the images acquired of the object to be reconstructed, i.e., without the use of calibration objects. Projection images are acquired using a CB{mu}CT system constructed in the authors' laboratories. Dark- and flat-field corrections are performed. Exposure variations are detected and quantified using analysis of image regions with an unobstructed view of the x-ray source. Translations that occur during the acquisition in the horizontal direction are detected, quantified, and corrected based on sinogram analysis. The axis of rotation is determined using registration of antiposed projection images. These techniques were evaluated using data obtained with calibration objects and phantoms. The physical geometric axis of rotation is determined and aligned with the rotational axis (assumed to be the center of the detector plane) used in the reconstruction process. The parameters describing this axis agree to within 0.1 mm and 0.3 deg with those determined using other techniques. Blurring due to residual calibration errors has a point-spread function in the reconstructed planes with a full-width-at-half-maximum of less than 125 {mu}m in a tangential direction and essentially zero in the radial direction for the rotating object. The authors have used this approach on over 100 acquisitions over the past 2 years and have regularly obtained high-quality reconstructions, i.e., without artifacts and no detectable blurring of the reconstructed objects. This self-calibrating approach not only obviates

  9. Assessment of the Impact of Zoledronic Acid on Ovariectomized Osteoporosis Model Using Micro-CT Scanning

    PubMed Central

    Shuai, Bo; Shen, Lin; Yang, Yanping; Ma, Chen; Zhu, Rui; Xu, Xiaojuan

    2015-01-01

    Purpose/Objective Prompted by preliminary findings, this study was conducted to investigate the impact of zoledronic acid on the cancellous bone microstructure and its effect on the level of β-catenin in a mouse model of postmenopausal osteoporosis. Methods and Materials 96 8-week-old specific-pathogen-free C57BL/6 mice were randomly divided into 4 groups (24 per group): a sham group, an ovariectomized osteoporosis model group, an estradiol-treated group, and a zoledronic acid-treated group. Five months after surgery, the third lumbar vertebra and left femur of the animals were dissected and scanned using micro-computed tomography (micro-CT) to acquire three-dimensional imagery of their cancellous bone microstructure. The impact of ovariectomy, the effect of estradiol, and the effect of zoledronic acid intervention on cancellous bone microstructure, as well as on the expression of β-catenin, were evaluated. Results The estradiol-treated and the zoledronic acid-treated group exhibited a significant increase in the bone volume fraction, trabecular number, trabecular thickness, bone surface to bone volume ratio (BS/BV), and β-catenin expression, when compared with those of the control group (P <0.01). In contrast, the structure model index, trabecular separation, and BS/BV were significantly lower compared with those of the model group (P <0.01). No differences were observed in the above parameters between animals of the zoledronic acid-treated and the estradiol-treated group. Conclusion These results suggest that increased β-catenin expression may be the mechanism underlying zoledronic acid-related improvement in the cancellous bone microstructure in ovariectomized mice. Our findings provide a scientific rationale for using zoledronic acid as a therapeutic intervention to prevent bone loss in post-menopausal women. PMID:26148020

  10. Fiber optic micro sensor for the measurement of tendon forces

    PubMed Central

    2012-01-01

    A fiber optic sensor developed for the measurement of tendon forces was designed, numerically modeled, fabricated, and experimentally evaluated. The sensor incorporated fiber Bragg gratings and micro-fabricated stainless steel housings. A fiber Bragg grating is an optical device that is spectrally sensitive to axial strain. Stainless steel housings were designed to convert radial forces applied to the housing into axial forces that could be sensed by the fiber Bragg grating. The metal housings were fabricated by several methods including laser micromachining, swaging, and hydroforming. Designs are presented that allow for simultaneous temperature and force measurements as well as for simultaneous resolution of multi-axis forces. The sensor was experimentally evaluated by hydrostatic loading and in vitro testing. A commercial hydraulic burst tester was used to provide uniform pressures on the sensor in order to establish the linearity, repeatability, and accuracy characteristics of the sensor. The in vitro experiments were performed in excised tendon and in a dynamic gait simulator to simulate biological conditions. In both experimental conditions, the sensor was found to be a sensitive and reliable method for acquiring minimally invasive measurements of soft tissue forces. Our results suggest that this sensor will prove useful in a variety of biomechanical measurements. PMID:23033868

  11. Polymer-based micro deformable mirror for adaptive optics applications

    NASA Astrophysics Data System (ADS)

    Zamkotsian, Frederic; Conedera, Veronique; Liotard, Arnaud; Schroeder, Andreas; Fabre, Norbert; Camon, Henri; Lanzoni, Patrick

    2005-01-01

    Next generation giant telescopes as well as next generation instrumentation for 10m-class telescopes relies on the availability of highly performing adaptive optical systems, for studying new fields like circumstellar disks and extrasolar planets. These systems require deformable mirrors with very challenging parameters, including number of actuators up to 250 000 and inter-actuator spacing around 500μm. MOEMS-based devices are promising for future deformable mirrors. However, only limited strokes for large driving voltages have been demonstrated. In order to overcome these limitations, we are currently developing a micro-deformable mirror based on an array of electrostatic actuators with attachment posts to a continuous mirror on top. The originality of our approach lies in the elaboration of a sacrificial layer and of a structural layer made of polymer materials, using low-temperature process. This process allows the realization of high optical quality mirrors on top of an actuator array made with various techniques. We have developed the first polymer piston-motion actuator in order to reach high strokes for low driving voltages: a 10μm thick mobile plate with four springs attached to the substrate, and with an air gap of 10μm exhibits a piston motion of 2μm for 30V. Preliminary comparison with FEM models show very good agreement and design of a complete polymer-based MDM looks possible.

  12. Micro-resonators coupled to atoms in an optical lattice

    NASA Astrophysics Data System (ADS)

    Geraci, Andrew; Kitching, John

    2010-03-01

    Recently there has been a convergence of ideas between the fields of solid-state and atomic physics -- examples range from using atoms for quantum simulation of condensed-matter Hamiltonians to physically coupling atoms with solid-state devices such as micro-resonators. In this talk, we discuss an experimental proposal involving an array of cooled microcantilevers coupled to a sample of ultracold atoms trapped near a microfabricated surface [1]. The cantilevers allow individual lattice site addressing for atomic state control and readout, and potentially may be useful in optical lattice quantum computation schemes. Assuming resonators can be cooled to their vibrational ground state, we describe the implementation of a two-qubit controlled-NOT gate with atomic internal states and the motional states of the resonators, along with a protocol for entangling two or more cantilevers on the atom chip using the trapped atoms as an intermediary. Although similar experiments could be carried out with magnetic microchip traps, the optical confinement scheme we consider may exhibit reduced near-field magnetic noise and decoherence. Prospects for using this system for tests of quantum mechanics at macroscopic scales or quantum information processing will be discussed. [4pt] [1] A. Geraci and J. Kitching, Phys. Rev. A 80, 032317 (2009)

  13. MEMS compatible illumination and imaging micro-optical systems

    NASA Astrophysics Data System (ADS)

    Bräuer, A.; Dannberg, P.; Duparré, J.; Höfer, B.; Schreiber, P.; Scholles, M.

    2007-01-01

    The development of new MOEMS demands for cooperation between researchers in micromechanics, optoelectronics and microoptics at a very early state. Additionally, microoptical technologies being compatible with structured silicon have to be developed. The microoptical technologies used for two silicon based microsystems are described in the paper. First, a very small scanning laser projector with a volume of less than 2 cm 3, which operates with a directly modulated lasers collimated with a microlens, is shown. The laser radiation illuminates a 2D-MEMS scanning mirror. The optical design is optimized for high resolution (VGA). Thermomechanical stability is realized by design and using a structured ceramics motherboard. Secondly, an ultrathin CMOS-camera having an insect inspired imaging system has been realized. It is the first experimental realization of an artificial compound eye. Micro-optical design principles and technology is used. The overall thickness of the imaging system is only 320 μm, the diagonal field of view is 21°, and the f-number is 2.6. The monolithic device consists of an UV-replicated microlens array upon a thin silica substrate with a pinhole array in a metal layer on the back side. The pitch of the pinholes differs from that of the lens array to provide individual viewing angle for each channel. The imaging chip is directly glued to a CMOS sensor with adapted pitch. The whole camera is less than 1mm thick. New packaging methods for these systems are under development.

  14. Assessment of optical CT as a future QA tool for synchrotron x-ray microbeam therapy.

    PubMed

    McErlean, Ciara M; Bräuer-Krisch, Elke; Adamovics, John; Doran, Simon J

    2016-01-01

    Synchrotron microbeam radiation therapy (MRT) is an advanced form of radiotherapy for which it is extremely difficult to provide adequate quality assurance. This may delay or limit its clinical uptake, particularly in the paediatric patient populations for whom it could be especially suitable. This study investigates the extent to which new developments in 3D dosimetry using optical computed tomography (CT) can visualise MRT dose distributions, and assesses what further developments are necessary before fully quantitative 3D measurements can be achieved. Two experiments are reported. In the first cylindrical samples of the radiochromic polymer PRESAGE(®) were irradiated with different complex MRT geometries including multiport treatments of collimated 'pencil' beams, interlaced microplanar arrays and a multiport treatment using an anthropomorphic head phantom. Samples were scanned using transmission optical CT. In the second experiment, optical CT measurements of the biologically important peak-to-valley dose ratio (PVDR) were compared with expected values from Monte Carlo simulations. The depth-of-field (DOF) of the optical CT system was characterised using a knife-edge method and the possibility of spatial resolution improvement through deconvolution of a measured point spread function (PSF) was investigated. 3D datasets from the first experiment revealed excellent visualisation of the 50 μm beams and various discrepancies from the planned delivery dose were found. The optical CT PVDR measurements were found to be consistently 30% of the expected Monte Carlo values and deconvolution of the microbeam profiles was found to lead to increased noise. The reason for the underestimation of the PVDR by optical CT was attributed to lack of spatial resolution, supported by the results of the DOF characterisation. Solutions are suggested for the outstanding challenges and the data are shown already to be useful in identifying potential treatment anomalies. PMID:26657052

  15. Assessment of optical CT as a future QA tool for synchrotron x-ray microbeam therapy

    NASA Astrophysics Data System (ADS)

    McErlean, Ciara M.; Bräuer-Krisch, Elke; Adamovics, John; Doran, Simon J.

    2016-01-01

    Synchrotron microbeam radiation therapy (MRT) is an advanced form of radiotherapy for which it is extremely difficult to provide adequate quality assurance. This may delay or limit its clinical uptake, particularly in the paediatric patient populations for whom it could be especially suitable. This study investigates the extent to which new developments in 3D dosimetry using optical computed tomography (CT) can visualise MRT dose distributions, and assesses what further developments are necessary before fully quantitative 3D measurements can be achieved. Two experiments are reported. In the first cylindrical samples of the radiochromic polymer PRESAGE® were irradiated with different complex MRT geometries including multiport treatments of collimated ‘pencil’ beams, interlaced microplanar arrays and a multiport treatment using an anthropomorphic head phantom. Samples were scanned using transmission optical CT. In the second experiment, optical CT measurements of the biologically important peak-to-valley dose ratio (PVDR) were compared with expected values from Monte Carlo simulations. The depth-of-field (DOF) of the optical CT system was characterised using a knife-edge method and the possibility of spatial resolution improvement through deconvolution of a measured point spread function (PSF) was investigated. 3D datasets from the first experiment revealed excellent visualisation of the 50 μm beams and various discrepancies from the planned delivery dose were found. The optical CT PVDR measurements were found to be consistently 30% of the expected Monte Carlo values and deconvolution of the microbeam profiles was found to lead to increased noise. The reason for the underestimation of the PVDR by optical CT was attributed to lack of spatial resolution, supported by the results of the DOF characterisation. Solutions are suggested for the outstanding challenges and the data are shown already to be useful in identifying potential treatment anomalies.

  16. Micro-optical design of a three-dimensional microlens scanner for vertically integrated micro-opto-electro-mechanical systems.

    PubMed

    Baranski, Maciej; Bargiel, Sylwester; Passilly, Nicolas; Gorecki, Christophe; Jia, Chenping; Frömel, Jörg; Wiemer, Maik

    2015-08-01

    This paper presents the optical design of a miniature 3D scanning system, which is fully compatible with the vertical integration technology of micro-opto-electro-mechanical systems (MOEMS). The constraints related to this integration strategy are considered, resulting in a simple three-element micro-optical setup based on an afocal scanning microlens doublet and a focusing microlens, which is tolerant to axial position inaccuracy. The 3D scanning is achieved by axial and lateral displacement of microlenses of the scanning doublet, realized by micro-electro-mechanical systems microactuators (the transmission scanning approach). Optical scanning performance of the system is determined analytically by use of the extended ray transfer matrix method, leading to two different optical configurations, relying either on a ball lens or plano-convex microlenses. The presented system is aimed to be a core component of miniature MOEMS-based optical devices, which require a 3D optical scanning function, e.g., miniature imaging systems (confocal or optical coherence microscopes) or optical tweezers. PMID:26368111

  17. When a 520 million-year-old Chengjiang fossil meets a modern micro-CT – a case study

    PubMed Central

    Liu, Yu; Scholtz, Gerhard; Hou, Xianguang

    2015-01-01

    The 520 million-year-old Chengjiang biota of China (UNESCO World Heritage) presents the earliest known evidence of the so-called Cambrian Explosion. Studies, however, have mainly been limited to the information exposed on the surface of the slabs. Thus far, structures preserved inside the slabs were accessed by careful removal of the matrix, in many cases with the unfortunate sacrifice of some “less important” structures, which destroys elements of exceptionally preserved specimens. Here, we show for the first time that microtomography (micro-CT) can reveal structures situated inside a Chengjiang fossil slab without causing any damage. In the present study a trilobitomorph arthropod (Xandarella spectaculum) can be reliably identified only with the application of micro-CT. We propose that this technique is an important tool for studying three-dimensionally preserved Chengjiang fossils and, most likely, also those from other biota with a comparable type of preservation, specifically similar iron concentrations. PMID:26238773

  18. When a 520 million-year-old Chengjiang fossil meets a modern micro-CT--a case study.

    PubMed

    Liu, Yu; Scholtz, Gerhard; Hou, Xianguang

    2015-01-01

    The 520 million-year-old Chengjiang biota of China (UNESCO World Heritage) presents the earliest known evidence of the so-called Cambrian Explosion. Studies, however, have mainly been limited to the information exposed on the surface of the slabs. Thus far, structures preserved inside the slabs were accessed by careful removal of the matrix, in many cases with the unfortunate sacrifice of some "less important" structures, which destroys elements of exceptionally preserved specimens. Here, we show for the first time that microtomography (micro-CT) can reveal structures situated inside a Chengjiang fossil slab without causing any damage. In the present study a trilobitomorph arthropod (Xandarella spectaculum) can be reliably identified only with the application of micro-CT. We propose that this technique is an important tool for studying three-dimensionally preserved Chengjiang fossils and, most likely, also those from other biota with a comparable type of preservation, specifically similar iron concentrations. PMID:26238773

  19. When a 520 million-year-old Chengjiang fossil meets a modern micro-CT - a case study

    NASA Astrophysics Data System (ADS)

    Liu, Yu; Scholtz, Gerhard; Hou, Xianguang

    2015-08-01

    The 520 million-year-old Chengjiang biota of China (UNESCO World Heritage) presents the earliest known evidence of the so-called Cambrian Explosion. Studies, however, have mainly been limited to the information exposed on the surface of the slabs. Thus far, structures preserved inside the slabs were accessed by careful removal of the matrix, in many cases with the unfortunate sacrifice of some “less important” structures, which destroys elements of exceptionally preserved specimens. Here, we show for the first time that microtomography (micro-CT) can reveal structures situated inside a Chengjiang fossil slab without causing any damage. In the present study a trilobitomorph arthropod (Xandarella spectaculum) can be reliably identified only with the application of micro-CT. We propose that this technique is an important tool for studying three-dimensionally preserved Chengjiang fossils and, most likely, also those from other biota with a comparable type of preservation, specifically similar iron concentrations.

  20. Understanding the micro structure of Berea Sandstone by the simultaneous use of micro-computed tomography (micro-CT) and focused ion beam-scanning electron microscopy (FIB-SEM).

    PubMed

    Bera, Bijoyendra; Mitra, Sushanta K; Vick, Douglas

    2011-07-01

    Berea sandstone is the building block for reservoirs containing precious hydrocarbon fuel. In this study, we comprehensively reveal the microstructure of Berea sandstone, which is often treated as a porous material with interconnected micro-pores of 2-5 μm. This has been possible due to the combined application of micro-computed tomography (CT) and focused ion beam (FIB)-scanning electron microscopy (SEM) on a Berea sample. While the use of micro-CT images are common for geological materials, the clubbing and comparison of tomography on Berea with state-of-the-art microstructure imaging techniques like FIB-SEM reveals some unforeseen features of Berea microstructure. In particular, for the first time FIB-SEM has been used to understand the micro-structure of reservoir rock material like Berea sandstone. By using these characterization tools, we are able to show that the micro-pores (less than 30 μm) are absent below the solid material matrix, and that it has small interconnected pores (30-40 μm) and large crater-like voids (100-250 μm) throughout the bulk material. Three-dimensional pore space reconstructions have been prepared from the CT images. Accordingly, characterization of Berea sandstone specimen is performed by calculation of pore-structure volumes and determination of porosity values. PMID:21208806

  1. Iterative reconstruction optimisations for high angle cone-beam micro-CT

    NASA Astrophysics Data System (ADS)

    Recur, B.; Fauconneau, M.; Kingston, A.; Myers, G.; Sheppard, A.

    2014-09-01

    We address several acquisition questions that have arisen for the high cone-angle helical-scanning micro-CT facility developed at the Australian National University. These challenges are generally known in medical and industrial cone-beam scanners but can be neglected in these systems. For our large datasets, with more than 20483 voxels, minimising the number of operations (or iterations) is crucial. Large cone-angles enable high signal-to-noise ratio imaging and a large helical pitch to be used. This introduces two challenges: (i) non-uniform resolution throughout the reconstruction, (ii) over-scan beyond the region-of-interest significantly increases re- quired reconstructed volume size. Challenge (i) can be addressed by using a double-helix or lower pitch helix but both solutions slow down iterations. Challenge (ii) can also be improved by using a lower pitch helix but results in more projections slowing down iterations. This may be overcome using less projections per revolution but leads to more iterations required. Here we assume a given total time for acquisition and a given reconstruction technique (SART) and seek to identify the optimal trajectory and number of projections per revolution in order to produce the best tomogram, minimise reconstruction time required, and minimise memory requirements.

  2. Active investigation of material damage under load using micro-CT

    SciTech Connect

    Navalgund, Megha Mishra, Debasish; Manoharan, V.; Zunjarrao, Suraj

    2015-03-31

    Due the growth of composite materials across multiple industries such as Aviation, Wind there is an increasing need to not just standardize and improve manufacturing processes but also to design these materials for the specific applications. One of the things that this translates to is understanding how failure initiates and grows in these materials and at what loads, especially around internal flaws such as voids or features such as ply drops. Traditional methods of investigating internal damage such as CT lack the resolution to resolve ply level damage in composites. Interrupted testing with layer removal can be used to investigate internal damage using microscopy; however this is a destructive method. Advanced techniques such as such as DIC are useful for in-situ damage detection, however are limited to surface information and would not enable interrogating the volume. Computed tomography has become a state of the art technique for metrology and complete volumetric investigation especially for metallic components. However, its application to the composite world is still nascent. This paper demonstrates micro-CT’s capability as a gauge to quantitatively estimate the extent of damage and understand the propagation of damage in PMC composites while the component is under stress.

  3. Development of a Beam Hardening Correction Method for a microCT Scanner Prototype

    SciTech Connect

    Kikushima, J.; Rodriguez-Villafuerte, M.; Martinez-Davalos, A.

    2010-12-07

    The radiographic projections acquired with a microCT were simulated and then corrected for beam hardening effects using the linearized signal to equivalent thickness (LSET) method. This procedure requires a calibration signal for each pixel obtained from a set of images with filters of increasing thickness. The projections are corrected by converting the signal to an equivalent thickness using interpolation over the calibration images. The method was validated using simulated projections of different phantoms. Two calibration sets were simulated using aluminum and water filters of thicknesses ranging from 0 to 5 mm and from 0 to 50 mm, respectively. A simulation of the phantoms' projections using a monoenergetic beam was also obtained to establish the relative intensity on the tomographic images when no cupping artifacts are present. Comparison between corrected and uncorrected tomographic images shows that the LSET method effectively corrects the cupping artifact. Streaking artifacts correction with the LSET method shows better results than with the traditional water correction method. Results are independent of the two calibration materials used.

  4. MicroCT scanner performance and considerations for vascular specimen imaging.

    PubMed

    Marxen, Michael; Thornton, Michael M; Chiarot, Cameron B; Klement, Giannoula; Koprivnikar, Janet; Sled, John G; Henkelman, R Mark

    2004-02-01

    Obtaining three-dimensional geometrical data of vascular systems is of major importance to a number of research areas in medicine and biology. Examples are the characterization of tumor vasculature, modeling blood flow, or genetic effects on vascular development. The performance of the General Electric Medical Systems MS8 microCT scanner is examined in the context of these applications. The system is designed to acquire high-resolution images of specimens up to 5 cm in diameter. A maximum resolution of 38 lp/mm at the 10% modulation transfer function level or 22 microm full width at half maximum of the plane spread function can be achieved with 8.5 microm voxels and a 17 mm field of view. Three different contrast agents are discussed and applied for imaging of small animal vasculature: corrosion casting material Batson's No. 17 with an added lead pigment, silicon rubber MICROFIL MV122, and a suspension of barium sulfate (Baritop) in gelatin. Contrast for all of these agents was highly variable in different vessels as well as within the same vessel. Imaging of PMMA tubing filled with MICROFIL shows that even vessels below 20 microm in diameter are detectable and that diameter estimation of vessels based on thresholding is possible with a precision of 2-3 pixels. PMID:15000616

  5. Three-dimensional imaging properties of rotation-free square and hexagonal micro-CT systems

    NASA Astrophysics Data System (ADS)

    Quan, Enzhuo; Lalush, David S.

    2009-02-01

    We perform simulation studies of proposed square and hexagonal geometries of a multi-source X-ray micro-computed tomography (CT) system. The system uses linear arrays of the carbon nano-tube (CNT)-based X-ray sources which are individually addressable. In the square geometry, two linear source arrays and two area detectors form a square; whereas in the hexagonal geometry, three linear source arrays and three area detectors form a hexagon. The tomographic angular sampling for both geometries requires no motion of the sources or subject. Based on the sinogram maps, the hexagonal geometry has improved angular coverage than the square geometry. The ordered-subset convex iterative algorithm is implemented in both geometries for reconstructions from cone-beam projection data. The reconstructed images from both geometries are generally consistent with the phantom, although some streaking artifacts due to the limited-angle nature of the geometries are observed. The two geometries show similar performance in resolution-noise tradeoff. The gap-free hexagonal geometry produces lower mean squared error in the reconstructed images; when gaps between the source arrays and detectors are introduced, the angular coverage of the hexagonal geometry degrades faster and becomes worse than the square geometry. The impact of gaps on the imaging properties must be studied further.

  6. Checking collagen preservation in archaeological bone by non-destructive studies (Micro-CT and IBA)

    NASA Astrophysics Data System (ADS)

    Beck, L.; Cuif, J.-P.; Pichon, L.; Vaubaillon, S.; Dambricourt Malassé, A.; Abel, R. L.

    2012-02-01

    The material to be studied is a piece of human skull discovered (1999) in Pleistocene sediments from the Orsang river (Gujarat state, India). From anatomical view point, this skull is highly composite: modern Homo sapiens characters are associated to undoubtedly more ancient features. Absolute dating by 14C is critical to understand this discovery. Prior to dating measurements, non-destructive studies have been carried out. Micro-CT reconstruction (X-ray microtomography) and Ion Beam Analysis (IBA) have been undertaken to check the structural preservation of the fossil and the collagen preservation. PIXE elemental map was used to select well-preserved bone area. RBS/EBS and NRA were used for light element quantification, in particular C, N and O contents. We also demonstrate that the PIXE-RBS/EBS combination is a effective tool for the whole characterization of archaeological and recent bones by analysing in one experiment both mineral and organic fractions. We have shown that the archaeological bone, a fragment of the potentially oldest modern Indian, is enough preserved for radiocarbon dating. We propose that Elastic Backscattering Spectrometry (EBS) using 3 MeV protons could be a good non destructive alternative to conventional CHN method using Carbon-Hydrogen-Nitrogen analyzer for measuring C and N before 14C dating.

  7. Ultrafast micro-CT for in vivo small animal imaging and industrial applications

    NASA Astrophysics Data System (ADS)

    Sasov, Alexander

    2004-10-01

    A new, ultra-fast microCT instrument with scanning+reconstruction cycle under 50 seconds for full 3D-volume has been created. The scanner based on the scanning geometry with static object and rotation of source-camera pair(s), which allows using it for industrial applications as well as for low-dose in-vivo imaging of small laboratory animals where rotation of the object is not acceptable. Acquisition part contains two pairs of x-ray sources and cameras for data collection from complementary directions simultaneously. Reconstruction engine (cone-beam reconstruction by modified Feldkamp algotithm) includes 1, 2 or 4 dual Intel-Xeon computers working in parallel under control of the host PC through local network. The instrument specifications are following: voxel size is 48 or 96 um for corresponding 1024x1024x1024 or 512x512x512 reconstruction array; scanning time with parallel reconstruction is 50 seconds for 96um resolution. X-ray sources peak energy can be adjusted in the range of 20-65kV. Typical scanning dose is 0.4Gy. The scanner itself is a compact desktop instrument, which contains all x-ray parts and necessary shielding for safe operations in the normal laboratory environments.

  8. Micro-CT evaluation of the marginal fit of CAD/CAM all ceramic crowns

    NASA Astrophysics Data System (ADS)

    Brenes, Christian

    Objectives: Evaluate the marginal fit of CAD/CAM all ceramic crowns made from lithium disilicate and zirconia using two different fabrication protocols (model and model-less). METHODS: Forty anterior all ceramic restorations (20 lithium disilicate, 20 zirconia) were fabricated using a CEREC Bluecam scanner. Two different fabrication methods were used: a full digital approach and a printed model. Completed crowns were cemented and marginal gap was evaluated using Micro-CT. Each specimen was analyzed in sagittal and trans-axial orientations, allowing a 360° evaluation of the vertical and horizontal fit. RESULTS: Vertical measurements in the lingual, distal and mesial views had and estimated marginal gap from 101.9 to 133.9 microns for E-max crowns and 126.4 to 165.4 microns for zirconia. No significant differences were found between model and model-less techniques. CONCLUSION: Lithium disilicate restorations exhibited a more accurate and consistent marginal adaptation when compared to zirconia crowns. No statistically significant differences were observed when comparing model or model-less approaches.

  9. MicroCT analysis of calcium/phosphorus ratio maps at different bone sites

    NASA Astrophysics Data System (ADS)

    Speller, R.; Pani, S.; Tzaphlidou, M.; Horrocks, J.

    2005-08-01

    The Ca/P ratio was measured in cortical bone samples from the femoral neck, front and rear tibia of rats, rabbits and lambs using synchrotron microCT. Use of a monoenergetic X-ray beam, as provided by the synchrotron facility, generates accurate 3-D maps of the linear attenuation coefficient within the sample and hence gives the ability to map different chemical components. Data were taken at 20 keV for each bone sample and calibration phantoms. From the 3-D data sets, multiple 2-D slices were reconstructed with a slice thickness of ˜28 μm and converted to Ca/P ratios using the calibration phantom results. Average values for each animal and bone site were estimated. Differences between the same bone sites from different animals are not significant (0.3< p<0.5) while those between different bone sites and different animals are highly significant ( p<10-3) demonstrating a dependence upon lifestyle and bone use. The spatial distribution of Ca/P was found to be non-uniform for some bones and some animals possibly indicating the structural mechanism for obtaining bone strength.

  10. Anatomy of hepatic arteriolo-portal venular shunts evaluated by 3D micro-CT imaging

    PubMed Central

    Kline, Timothy L; Knudsen, Bruce E; Anderson, Jill L; Vercnocke, Andrew J; Jorgensen, Steven M; Ritman, Erik L

    2014-01-01

    The liver differs from other organs in that two vascular systems deliver its blood – the hepatic artery and the portal vein. However, how the two systems interact is not fully understood. We therefore studied the microvascular geometry of rat liver hepatic artery and portal vein injected with the contrast polymer Microfil®. Intact isolated rat livers were imaged by micro-CT and anatomic evidence for hepatic arteriolo-portal venular shunts occurring between hepatic artery and portal vein branches was found. Simulations were performed to rule out the possibility of the observed shunts being artifacts resulting from image blurring. In addition, in the case of specimens where only the portal vein was injected, only the portal vein was opacified, whereas in hepatic artery injections, both the hepatic artery and portal vein were opacified. We conclude that mixing of the hepatic artery and portal vein blood can occur proximal to the sinusoidal level, and that the hepatic arteriolo-portal venular shunts may function as a one-way valve-like mechanism, allowing flow only from the hepatic artery to the portal vein (and not the other way around). PMID:24684343

  11. High density, optically corrected, micro-channel cooled, v-groove monolithic laser diode array

    DOEpatents

    Freitas, Barry L.

    1998-01-01

    An optically corrected, micro-channel cooled, high density laser diode array achieves stacking pitches to 33 bars/cm by mounting laser diodes into V-shaped grooves. This design will deliver>4kW/cm2 of directional pulsed laser power. This optically corrected, micro-channel cooled, high density laser is usable in all solid state laser systems which require efficient, directional, narrow bandwidth, high optical power density pump sources.

  12. High density, optically corrected, micro-channel cooled, v-groove monolithic laser diode array

    DOEpatents

    Freitas, B.L.

    1998-10-27

    An optically corrected, micro-channel cooled, high density laser diode array achieves stacking pitches to 33 bars/cm by mounting laser diodes into V-shaped grooves. This design will deliver > 4kW/cm{sup 2} of directional pulsed laser power. This optically corrected, micro-channel cooled, high density laser is usable in all solid state laser systems which require efficient, directional, narrow bandwidth, high optical power density pump sources. 13 figs.

  13. The application of micro-CT in monitoring bone alterations in tail-suspended rats in vivo

    NASA Astrophysics Data System (ADS)

    Luan, Hui-Qin; Sun, Lian-Wen; Huang, Yun-Fei; Wang, Ying; McClean, Colin J.; Fan, Yu-Bo

    2014-06-01

    Osteopenia is a pathological process that affects human skeletal health not only on earth but also in long-time spaceflight. Micro-computed tomography (micro-CT) is a nondestructive method for assessing both bone quantity and bone quality. To investigate the characteristics of micro-CT on evaluating the microgravity-induced osteopenia (e.g. early detection time and the sensitive parameters), the bone loss process of tail-suspended rats was monitored by micro-CT in this study. 8-Week-old female Sprague Dawley rats were divided into two groups: tail suspension (TS) and control (CON). Volumetric bone mineral density (vBMD) and microstructure of the femur and tibia were evaluated in vivo by micro-CT at 0, 7, 14, 22 days. Biomechanical properties of the femur and tibia were determined by three-point bending test. The ash weight of bone was also investigated. The results showed that (1) bone loss in the proximal tibia appeared earlier than in the distal femur. (2) On day 7, the percent bone volume (BV/TV) of the tibia 15.44% decreased significantly, and the trabecular separation (Tb.Sp) 30.29% increased significantly in TS group, both of which were detected earlier than other parameters. (3) Biomechanical properties (e.g. femur, -22.4% maximum load and -23.75% Young’s modulus vs. CON) and ash weight of the femur and tibia decreased significantly in the TS group in comparison to CON group. (4) vBMD of the femur and tibia were clearly related to bone ash and dry weight (r = 0.75-0.87, p < 0.05). (5) BV/TV of both femur and tibia were clearly related to maximum load and Young’s modulus (r = 0.66-0.87, p < 0.05). Similarly, trabecular vBMD and BV/TV of the femur and tibia were clearly related to Young’s modulus (r = 0.73-0.89, p < 0.05). These indicated that BV/TV and Tb.Sp were more sensitive than other parameters for evaluating bone loss induced by tail suspension, moreover, trabecular vBMD and other parameters might be used to evaluate bone strength. Therefore

  14. Comparison of fan-beam, cone-beam, and spiral scan reconstruction in x-ray micro-CT

    NASA Astrophysics Data System (ADS)

    Sasov, Alexander

    2001-06-01

    We developed and tested reconstruction software packages for different algorithms: fan-beam, cone-beam (Feldkamp) and spiral (helical) scans. All algorithms were applied to different simulations as well as to the real datasets from the commercial micro-CT instruments. From the results of testing a number of strong and weak points at different approaches was found. Several examples from the different application areas (bone microstructure, industrial applications) show typical reconstruction artifacts with different algorithms.

  15. Angioarchitectural changes in subacute cerebral venous thrombosis. A synchrotron-based micro- and nano-CT study.

    PubMed

    Stolz, Erwin; Yeniguen, Mesut; Kreisel, Melanie; Kampschulte, Marian; Doenges, Simone; Sedding, Daniel; Ritman, Erik L; Gerriets, Tibo; Langheinrich, Alexander C

    2011-02-01

    It is well known that recanalization of thrombosed cerebral sinuses occurs early but without marked influence on the long-term outcome and on final venous infarct volume on magnetic resonance imaging. To better understand the possible microvascular mechanisms behind these clinical observations, we evaluated the sequels of subacute superior sagittal sinus (SSS) thrombosis in rats using micro- and nano-CT imaging of the same specimen to provide large volume and high resolution CT image data respectively. SSS thrombosis was induced in 11 animals which were euthanized after 6h (n=4) or 6 weeks (n=7). Eight sham-operated rats served as controls. After infusion of contrast into the vasculature of the brains, these were isolated and scanned using micro-, nano-, and synchrotron-based micro-CT ((8 μm³), (900 nm)³, and (1.9 μm³) voxel sizes). The cross-sectional area of the superior sagittal sinus, microvessels and cortical veins were quantified. Tissue sections were stained against VEGF antigen. Immunohistochemistry was confirmed using quantitative rtPCR. SSS thrombosis led to a congestion of the bridging veins after 6h. After 6 weeks, a network of small vessels surrounding the occluded SSS was present with concurrent return towards the diameter of the draining bridging veins of controls. This microvascular network connected to cortical veins as demonstrated by nano- and synchrotron-based micro-CT. Also the volume fraction and number of cortical veins increased significantly. Immunohistochemistry in the region of the microsvascular network demonstrated a strong immunoreactivity against VEGF, confirmed by rtPCR. The sequel of subacute SSS thrombosis induced a network of microvessels ("venogenesis") draining the bridging veins. Also the volume fraction of cortical veins increased significantly. PMID:20974267

  16. Angioarchitectural Changes in Subacute Cerebral Venous Thrombosis. A Synchrotron-based Micro- and Nano-CT Study

    SciTech Connect

    E Stolz; M Yeniguen; M Kreisel; M Kampschulte; S Doenges; D Sedding; E Ritman; T Gerriets; A Langheinrich

    2011-12-31

    It is well known that recanalization of thrombosed cerebral sinuses occurs early but without marked influence on the long-term outcome and on final venous infarct volume on magnetic resonance imaging. To better understand the possible microvascular mechanisms behind these clinical observations, we evaluated the sequels of subacute superior sagittal sinus (SSS) thrombosis in rats using micro- and nano-CT imaging of the same specimen to provide large volume and high resolution CT image data respectively. SSS thrombosis was induced in 11 animals which were euthanized after 6 h (n = 4) or 6 weeks (n = 7). Eight sham-operated rats served as controls. After infusion of contrast into the vasculature of the brains, these were isolated and scanned using micro-, nano-, and synchrotron-based micro-CT ((8 {mu}m{sup 3}), (900 nm){sup 3}, and (1.9 {mu}m{sup 3}) voxel sizes). The cross-sectional area of the superior sagittal sinus, microvessels and cortical veins were quantified. Tissue sections were stained against VEGF antigen. Immunohistochemistry was confirmed using quantitative rtPCR. SSS thrombosis led to a congestion of the bridging veins after 6 h. After 6 weeks, a network of small vessels surrounding the occluded SSS was present with concurrent return towards the diameter of the draining bridging veins of controls. This microvascular network connected to cortical veins as demonstrated by nano- and synchrotron-based micro-CT. Also the volume fraction and number of cortical veins increased significantly. Immunohistochemistry in the region of the microsvascular network demonstrated a strong immunoreactivity against VEGF, confirmed by rtPCR. The sequel of subacute SSS thrombosis induced a network of microvessels ('venogenesis') draining the bridging veins. Also the volume fraction of cortical veins increased significantly.

  17. Fast X-ray micro-CT for real-time 4D observation

    NASA Astrophysics Data System (ADS)

    Takano, H.; Yoshida, K.; Tsuji, T.; Koyama, T.; Tsusaka, Y.; Kagoshima, Y.

    2009-09-01

    Fast X-ray computed tomography (CT) system with sub-second order measurement for single CT acquisition has been developed. The system, consisting of a high-speed sample rotation stage and a high-speed X-ray camera, is constructed at synchrotron radiation beamline in order to utilize fully intense X-rays. A time-resolving CT movie (i.e. 4D CT) can be available by operating the fast CT system continuously. Real-time observation of water absorbing process of super-absorbent polymer (SAP) has been successfully performed with the 4D CT operation.

  18. Micro-CT image-derived metrics quantify arterial wall distensibility reduction in a rat model of pulmonary hypertension

    NASA Astrophysics Data System (ADS)

    Johnson, Roger H.; Karau, Kelly L.; Molthen, Robert C.; Haworth, Steven T.; Dawson, Christopher A.

    2000-04-01

    We developed methods to quantify arterial structural and mechanical properties in excised rat lungs and applied them to investigate the distensibility decrease accompanying chronic hypoxia-induced pulmonary hypertension. Lungs of control and hypertensive (three weeks 11% O2) animals were excised and a contrast agent introduced before micro-CT imaging with a special purpose scanner. For each lung, four 3D image data sets were obtained, each at a different intra-arterial contrast agent pressure. Vessel segment diameters and lengths were measured at all levels in the arterial tree hierarchy, and these data used to generate features sensitive to distensibility changes. Results indicate that measurements obtained from 3D micro-CT images can be used to quantify vessel biomechanical properties in this rat model of pulmonary hypertension and that distensibility is reduced by exposure to chronic hypoxia. Mechanical properties can be assessed in a localized fashion and quantified in a spatially-resolved way or as a single parameter describing the tree as a whole. Micro-CT is a nondestructive way to rapidly assess structural and mechanical properties of arteries in small animal organs maintained in a physiological state. Quantitative features measured by this method may provide valuable insights into the mechanisms causing the elevated pressures in pulmonary hypertension of differing etiologies and should become increasingly valuable tools in the study of complex phenotypes in small-animal models of important diseases such as hypertension.

  19. Micro-CT scan reveals an unexpected high-volume and interconnected pore network in a Cretaceous Sanagasta dinosaur eggshell.

    PubMed

    Hechenleitner, E Martín; Grellet-Tinner, Gerald; Foley, Matthew; Fiorelli, Lucas E; Thompson, Michael B

    2016-03-01

    The Cretaceous Sanagasta neosauropod nesting site (La Rioja, Argentina) was the first confirmed instance of extinct dinosaurs using geothermal-generated heat to incubate their eggs. The nesting strategy and hydrothermal activities at this site led to the conclusion that the surprisingly 7 mm thick-shelled eggs were adapted to harsh hydrothermal microenvironments. We used micro-CT scans in this study to obtain the first three-dimensional microcharacterization of these eggshells. Micro-CT-based analyses provide a robust assessment of gas conductance in fossil dinosaur eggshells with complex pore canal systems, allowing calculation, for the first time, of the shell conductance through its thickness. This novel approach suggests that the shell conductance could have risen during incubation to seven times more than previously estimated as the eggshell erodes. In addition, micro-CT observations reveal that the constant widening and branching of pore canals form a complex funnel-like pore canal system. Furthermore, the high density of pore canals and the presence of a lateral canal network in the shell reduce the risks of pore obstruction during the extended incubation of these eggs in a relatively highly humid and muddy nesting environment. PMID:27009182

  20. Micro-CT Sections and Histological Sections of Mouse Skull Defects Implanted with Cartilage Grown in a Rotating Bioreactor

    NASA Astrophysics Data System (ADS)

    Duke, P. J.; Montufar-Solis, D.; Nguyen, H. C.; Cody, D. D.

    2008-06-01

    Using cartilage to replace/repair bone is advantageous as no scaffolding is required to form the implant which disappears as bone is formed during the endochondral process. Previously, we demonstrated that cartilage spheroids, grown in a rotating bioreactor, (Synthecon, Inc.) and implanted into a 2 mm skull defect, contributed to healing of the defect. In this report, skulls with or without implants were subjected to microCT scans, and sections from these scans were compared to histological sections of the defect region of demineralized skulls from the same experiment. The area of the defect staining for bone in histological sections of demineralized skulls was the same region shown as mineralized in CT sections. Defects without implants were shown in serial CT sections and histological sections, to be incompletely healed. This study demonstrates that microCT scans are an important corollary to histological studies evaluating the use of implants in healing of bony defects. Supported in part by NIH/NIDCR Training Grant T35 DE07252 and by Cancer Center Support Grant (CA-16672).

  1. Optical properties of diatom nanostructured biosilica in Arachnoidiscus sp: micro-optics from mother nature.

    PubMed

    Ferrara, Maria Antonietta; Dardano, Principia; De Stefano, Luca; Rea, Ilaria; Coppola, Giuseppe; Rendina, Ivo; Congestri, Roberta; Antonucci, Alessandra; De Stefano, Mario; De Tommasi, Edoardo

    2014-01-01

    Some natural structures show three-dimensional morphologies on the micro- and nano-scale, characterized by levels of symmetry and complexity well far beyond those fabricated by best technologies available. This is the case of diatoms, unicellular microalgae, whose protoplasm is enclosed in a nanoporous microshell, made of hydrogenated amorphous silica, called frustule. We have studied the optical properties of Arachnoidiscus sp. single valves both in visible and ultraviolet range. We found photonic effects due to diffraction by ordered pattern of pores and slits, accordingly to an elaborated theoretical model. For the first time, we experimentally revealed spatial separation of focused light in different spots, which could be the basis of a micro-bio-spectrometer. Characterization of such intricate structures can be of great inspiration for photonic devices of next generation. PMID:25076045

  2. Optical Properties of Diatom Nanostructured Biosilica in Arachnoidiscus sp: Micro-Optics from Mother Nature

    PubMed Central

    Ferrara, Maria Antonietta; Dardano, Principia; De Stefano, Luca; Rea, Ilaria; Coppola, Giuseppe; Rendina, Ivo; Congestri, Roberta; Antonucci, Alessandra; De Stefano, Mario; De Tommasi, Edoardo

    2014-01-01

    Some natural structures show three-dimensional morphologies on the micro- and nano- scale, characterized by levels of symmetry and complexity well far beyond those fabricated by best technologies available. This is the case of diatoms, unicellular microalgae, whose protoplasm is enclosed in a nanoporous microshell, made of hydrogenated amorphous silica, called frustule. We have studied the optical properties of Arachnoidiscus sp. single valves both in visible and ultraviolet range. We found photonic effects due to diffraction by ordered pattern of pores and slits, accordingly to an elaborated theoretical model. For the first time, we experimentally revealed spatial separation of focused light in different spots, which could be the basis of a micro-bio-spectrometer. Characterization of such intricate structures can be of great inspiration for photonic devices of next generation. PMID:25076045

  3. Human pulmonary acinar airspace segmentation from three-dimensional synchrotron radiation micro CT images of secondary pulmonary lobule

    NASA Astrophysics Data System (ADS)

    Kawata, Y.; Hosokawa, T.; Niki, N.; Umetani, K.; Nakano, Y.; Ohmatsu, H.; Moriyama, N.; Itoh, H.

    2011-03-01

    The recognition of abnormalities relative to the lobular anatomy has become increasingly important in the diagnosis and differential diagnosis of lung abnormalities at clinical routines of CT examinations. This paper aims for a 3-D microstructural analysis of the pulmonary acinus with isotropic spatial resolution in the range of several micrometers by using micro CT. Previously, we demonstrated the ability of synchrotron radiation micro CT (SRμCT) using offset scan mode in microstructural analysis of the whole part of the secondary pulmonary lobule. In this paper, we present a semi-automatic method to segment the acinar and subacinar airspaces from the secondary pulmonary lobule imaged by the SRμCT. The method began with a segmentation of the tissues such as pleural surface, interlobular septa, alveola wall, or vessel using threshold technique and 3-D connected component analysis. Follow-on stages then constructed 3-D air space separated by tissues and represented branching patterns of airways and airspaces distal to the terminal bronchiole. Finally, a graph-partitioning approach isolated acini whose stems were interactively defined as the terminal bronchiole in the secondary pulmonary lobule. Additionally, the isolated acinar airspace was segmented into subacini in which the airway was considered as the stem using the graph-partitioning approach. Results demonstrate that the proposed method can extract several acinar airspaces from the 3-D SRμCT image of secondary pulmonary lobule and that the extracted acinar airspace enable an accurate quantitative description of the anatomy of the human acinus for interpretation of the basic unit of pulmonary structure and function.

  4. Micro optical fiber light source and sensor and method of fabrication thereof

    DOEpatents

    Kopelman, R.; Tan, W.; Shi, Z.Y.

    1997-05-06

    This invention relates generally to the development of and a method of fabricating a fiber optic micro-light source and sensor. An optical fiber micro-light source is presented whose aperture is extremely small yet able to act as an intense light source. Light sources of this type have wide ranging applications, including use as micro-sensors in NSOM. Micro-sensor light sources have excellent detection limits as well as photo stability, reversibility, and millisecond response times. Furthermore, a method for manufacturing a micro optical fiber light source is provided. It involves the photo-chemical attachment of an optically active material onto the end surface of an optical fiber cable which has been pulled to form an end with an extremely narrow aperture. More specifically, photopolymerization has been applied as a means to photo-chemically attach an optically active material. This process allows significant control of the size of the micro light source. Furthermore, photo-chemically attaching an optically active material enables the implementation of the micro-light source in a variety of sensor applications. 10 figs.

  5. Micro optical fiber light source and sensor and method of fabrication thereof

    DOEpatents

    Kopelman, R.; Tan, W.; Shi, Z.Y.

    1994-11-01

    This invention relates generally to the development of and a method of fabricating a micro optical fiber light source. An optical fiber micro-light source is presented whose aperture is extremely small yet able to act as an intense light source. Light sources of this type have wide ranging applications, including use as micro-sensors in NSOM. Micro-sensor light sources have excellent detection limits as well as photo stability, reversibility, and millisecond response times. Furthermore, a method for manufacturing a micro optical fiber light source is provided. It involves the photo-chemical attachment of an optically active material onto the end surface of an optical fiber cable which has been pulled to form an end with an extremely narrow aperture. More specifically, photopolymerization has been applied as a means to photo-chemically attach an optically active material. This process allows significant control of the size of the micro light source. Furthermore, photo-chemically attaching an optically active material enables the implementation of the micro-light source in a variety of sensor applications. 4 figs.

  6. Micro optical fiber light source and sensor and method of fabrication thereof

    DOEpatents

    Kopelman, Raoul; Tan, Weihong; Shi, Zhong-You

    1997-01-01

    This invention relates generally to the development of and a method of fabricating a fiber optic micro-light source and sensor (50). An optical fiber micro-light source (50) is presented whose aperture is extremely small yet able to act as an intense light source. Light sources of this type have wide ranging applications, including use as micro-sensors (22) in NSOM. Micro-sensor light sources have excellent detection limits as well as photo stability, reversibility, and millisecond response times. Furthermore, a method for manufacturing a micro optical fiber light source is provided. It involves the photo-chemical attachment of an optically active material onto the end surface of an optical fiber cable which has been pulled to form an end with an extremely narrow aperture. More specifically, photopolymerization has been applied as a means to photo-chemically attach an optically active material (60). This process allows significant control of the size of the micro light source (50). Furthermore, photo-chemically attaching an optically active material (60) enables the implementation of the micro-light source in a variety of sensor applications.

  7. Micro optical fiber light source and sensor and method of fabrication thereof

    DOEpatents

    Kopelman, Raoul; Tan, Weihong; Shi, Zhong-You

    1994-01-01

    This invention relates generally to the development of and a method of fabricating a micro optical fiber light source. An optical fiber micro-light source is presented whose aperture is extremely small yet able to act as an intense light source. Light sources of this type have wide ranging applications, including use as micro-sensors in NSOM. Micro-sensor light sources have excellent detection limits as well as photo stability, reversibility, and millisecond response times. Furthermore, a method for manufacturing a micro optical fiber light source is provided. It involves the photo-chemical attachment of an optically active material onto the end surface of an optical fiber cable which has been pulled to form an end with an extremely narrow aperture. More specifically, photopolymerization has been applied as a means to photo-chemically attach an optically active material. This process allows significant control of the size of the micro light source. Furthermore, photo-chemically attaching an optically active material enables the implementation of the micro-light source in a variety of sensor applications.

  8. Characterization of the optical parameters of high aspect ratio polymer micro-optical components

    NASA Astrophysics Data System (ADS)

    Krajewski, Rafal; Van Erps, Jurgen; Wissmann, Markus; Kujawinska, Malgorzata; Parriaux, Olivier; Tonchev, S.; Mohr, Jurgen; Thienpont, Hugo

    2008-04-01

    Over the last decades the significant grow of interest of photonics devices is observed in various fields of applications. Due to the market demands, the current research studies are focused on the technologies providing miniaturized, reliable low-cost micro-optical systems, particularly the ones featuring the fabrication of high aspect ratio structures. A high potential of these technologies comes from the fact that fabrication process is not limited to single optical components, but entire systems integrating sets of elements could be fabricated. This could in turn result in a significant saving on the assembly and packaging costs. We present a brief overview of the most common high aspect ratio fabrication technologies for micro-optical components followed by some characterization studies of these techniques. The sidewall quality and internal homogeneity will be considered as the most crucial parameters, having an impact on the wavefront propagation in the fabricated components. We show the characterization procedure and measurement results for components prototyped with Deep Proton Writing and glass micromachining technology replicated with Hot Embossing and Elastomeric Mould Vacuum Casting technology. We discuss the pros and cons for using these technologies for the production of miniaturized interferometers blocks. In this paper we present the status of our research on the new technology chain and we show the concept of microinterferometers to be fabricated within presented technology chain.

  9. Developments in Pursuit of a Micro-Optic Gyroscope

    SciTech Connect

    VAWTER, GREGORY A.; ZUBRZYCKI, WALTER J.; PEAKE, GREGORY M.; ALFORD, CHARLES; HARGETT, TERRY; SALTERS, BETTY; HUDGENS, JAMES J.; KINNEY, RAGON D.

    2003-03-01

    necessary for a resonant micro-optical gyro. We individually designed an AlGaAs distributed Bragg reflector laser; GaAs phase modulator and GaAs photodiode detector. Furthermore, we have fabricated a breadboard gyroscope, which was used to confirm modeling and evaluate signal processing and control circuits.

  10. Optical coherence micro-elastography: mechanical-contrast imaging of tissue microstructure.

    PubMed

    Kennedy, Brendan F; McLaughlin, Robert A; Kennedy, Kelsey M; Chin, Lixin; Curatolo, Andrea; Tien, Alan; Latham, Bruce; Saunders, Christobel M; Sampson, David D

    2014-07-01

    We present optical coherence micro-elastography, an improved form of compression optical coherence elastography. We demonstrate the capacity of this technique to produce en face images, closely corresponding with histology, that reveal micro-scale mechanical contrast in human breast and lymph node tissues. We use phase-sensitive, three-dimensional optical coherence tomography (OCT) to probe the nanometer-to-micrometer-scale axial displacements in tissues induced by compressive loading. Optical coherence micro-elastography incorporates common-path interferometry, weighted averaging of the complex OCT signal and weighted least-squares regression. Using three-dimensional phase unwrapping, we have increased the maximum detectable strain eleven-fold over no unwrapping and the minimum detectable strain is 2.6 με. We demonstrate the potential of mechanical over optical contrast for visualizing micro-scale tissue structures in human breast cancer pathology and lymph node morphology. PMID:25071952

  11. Design and fabrication issues in the development of monolithic micro-optical systems

    SciTech Connect

    Rajic, S.; Egert, C.M.

    1995-12-01

    The micro-sensor field is presently proliferating with various designs and approaches. The author have recently been involved with several mini/micro optical systems which have pointed out several trends in design and fabrication that are somewhat more important to these smaller optical systems. These include: material choices, alignment strategies, fabrication methods, and freedom and complexity of the optical designs. Their recent experience indicates that since mini/micro optical systems are likely to be produced in much higher number, that traditional fabrication methods could prove exorbitantly expensive. Deterministic fabrication methods employing inherently self-aligning features are well worth investigating. This is particularly true for monolithic systems that fall into that grey area between mini and truly micro optical systems. This forum will allow the examination of three such recent systems with respect to design and fabrication.

  12. Feasibility of a dual wavelength laser optical CT scanner with in-air gel readout

    NASA Astrophysics Data System (ADS)

    Ramm, D.; Rutten, T. P.

    2015-01-01

    Net optical attenuation in optical CT scanning is usually determined by pre and postirradiation scans. Replacement of the pre-irradiation scan by a scan of different wavelength, acquired concurrently with the post irradiation scan is proposed. This would result in greater practicality of gel dosimetry and potentially improved image quality. This study indicates that the approach may be viable, however experimental investigation is required for analysis of the prospective benefits of removing inter-scan variations.

  13. NEMO educational kit on micro-optics at the secondary school

    NASA Astrophysics Data System (ADS)

    Flores-Arias, M. T.; Bao-Varela, Carmen

    2014-07-01

    NEMO was the "Network of Excellence in Micro-Optics" granted in the "Sixth Framework Program" of the European Union. It aimed at providing Europe with a complete Micro-Optics food-chain, by setting up centers for optical modeling and design; measurement and instrumentation; mastering, prototyping and replication; integration and packaging and reliability and standardization. More than 300 researchers from 30 groups in 12 countries participated in the project. One of the objectives of NEMO was to spread excellence and disseminate knowledge on micro-optics and micro-photonics. To convince pupils, already from secondary school level on, about the crucial role of light and micro-optics and the opportunities this combination holds, several partners of NEMO had collaborate to create this Educational Kit. In Spain the partner involved in this aim was the "Microoptics and GRIN Optics Group" at the University of Santiago of Compostela (USC). The educational kits provided to the Secondary School were composed by two plastic cards with the following microoptical element: different kinds of diffractive optical elements or DOES and refractive optical elements or ROEs namely arrays of micro-lenses. The kit also included a DVD with a handbook for performing the experiments as well as a laser pointer source. This kit was distributed free of charge in the countries with partners in NEMO. In particular in Spain was offered to around 200 Secondary School Centers and only 80 answered accepting evaluate the kit.

  14. Local x-ray structure analysis of optically manipulated biological micro-objects

    SciTech Connect

    Cojoc, Dan; Ferrari, Enrico; Santucci, Silvia C.; Amenitsch, Heinz; Sartori, Barbara; Rappolt, Michael; Marmiroli, Benedetta; Burghammer, Manfred; Riekel, Christian

    2010-12-13

    X-ray diffraction using micro- and nanofocused beams is well suited for nanostructure analysis at different sites of a biological micro-object. To conduct in vitro studies without mechanical contact, we developed object manipulation by optical tweezers in a microfluidic cell. Here we report x-ray microdiffraction analysis of a micro-object optically trapped in three dimensions. We revealed the nanostructure of a single starch granule at different points and investigated local radiation damage induced by repeated x-ray exposures at the same position, demonstrating high stability and full control of the granule orientation by multiple optical traps.

  15. Delayed contrast enhancement imaging of a murine model for ischemia reperfusion with carbon nanotube micro-CT.

    PubMed

    Burk, Laurel M; Wang, Ko-Han; Wait, John Matthew; Kang, Eunice; Willis, Monte; Lu, Jianping; Zhou, Otto; Lee, Yueh Z

    2015-01-01

    We aim to demonstrate the application of free-breathing prospectively gated carbon nanotube (CNT) micro-CT by evaluating a myocardial infarction model with a delayed contrast enhancement technique. Evaluation of murine cardiac models using micro-CT imaging has historically been limited by extreme imaging requirements. Newly-developed CNT-based x-ray sources offer precise temporal resolution, allowing elimination of physiological motion through prospective gating. Using free-breathing, cardiac-gated CNT micro-CT, a myocardial infarction model can be studied non-invasively and with high resolution. Myocardial infarction was induced in eight male C57BL/6 mice aged 8-12 weeks. The ischemia reperfusion model was achieved by surgically occluding the LAD artery for 30 minutes followed by 24 hours of reperfusion. Tail vein catheters were placed for contrast administration. Iohexol 300 mgI/mL was administered followed by images obtained in diastole. Iodinated lipid blood pool contrast agent was then administered, followed with images at systole and diastole. Respiratory and cardiac signals were monitored externally and used to gate the scans of free-breathing subjects. Seven control animals were scanned using the same imaging protocol. After imaging, the heart was harvested, cut into 1mm slices and stained with TTC. Post-processing analysis was performed using ITK-Snap and MATLAB. All animals demonstrated obvious delayed contrast enhancement in the left ventricular wall following the Iohexol injection. The blood pool contrast agent revealed significant changes in cardiac function quantified by 3-D volume ejection fractions. All subjects demonstrated areas of myocardial infarct in the LAD distribution on both TTC staining and micro-CT imaging. The CNT micro-CT system aids straightforward, free-breathing, prospectively-gated 3-D murine cardiac imaging. Delayed contrast enhancement allows identification of infarcted myocardium after a myocardial ischemic event. We demonstrate

  16. Monte Carlo simulations of the dose from imaging with GE eXplore 120 micro-CT using GATE

    SciTech Connect

    Bretin, Florian; Bahri, Mohamed Ali; Luxen, André; Phillips, Christophe; Plenevaux, Alain; Seret, Alain

    2015-10-15

    Purpose: Small animals are increasingly used as translational models in preclinical imaging studies involving microCT, during which the subjects can be exposed to large amounts of radiation. While the radiation levels are generally sublethal, studies have shown that low-level radiation can change physiological parameters in mice. In order to rule out any influence of radiation on the outcome of such experiments, or resulting deterministic effects in the subjects, the levels of radiation involved need to be addressed. The aim of this study was to investigate the radiation dose delivered by the GE eXplore 120 microCT non-invasively using Monte Carlo simulations in GATE and to compare results to previously obtained experimental values. Methods: Tungsten X-ray spectra were simulated at 70, 80, and 97 kVp using an analytical tool and their half-value layers were simulated for spectra validation against experimentally measured values of the physical X-ray tube. A Monte Carlo model of the microCT system was set up and four protocols that are regularly applied to live animal scanning were implemented. The computed tomography dose index (CTDI) inside a PMMA phantom was derived and multiple field of view acquisitions were simulated using the PMMA phantom, a representative mouse and rat. Results: Simulated half-value layers agreed with experimentally obtained results within a 7% error window. The CTDI ranged from 20 to 56 mGy and closely matched experimental values. Derived organ doses in mice reached 459 mGy in bones and up to 200 mGy in soft tissue organs using the highest energy protocol. Dose levels in rats were lower due to the increased mass of the animal compared to mice. The uncertainty of all dose simulations was below 14%. Conclusions: Monte Carlo simulations proved a valuable tool to investigate the 3D dose distribution in animals from microCT. Small animals, especially mice (due to their small volume), receive large amounts of radiation from the GE eXplore 120

  17. Delayed Contrast Enhancement Imaging of a Murine Model for Ischemia Reperfusion with Carbon Nanotube Micro-CT

    PubMed Central

    Burk, Laurel M.; Wang, Ko-Han; Wait, John Matthew; Kang, Eunice; Willis, Monte; Lu, Jianping; Zhou, Otto; Lee, Yueh Z.

    2015-01-01

    We aim to demonstrate the application of free-breathing prospectively gated carbon nanotube (CNT) micro-CT by evaluating a myocardial infarction model with a delayed contrast enhancement technique. Evaluation of murine cardiac models using micro-CT imaging has historically been limited by extreme imaging requirements. Newly-developed CNT-based x-ray sources offer precise temporal resolution, allowing elimination of physiological motion through prospective gating. Using free-breathing, cardiac-gated CNT micro-CT, a myocardial infarction model can be studied non-invasively and with high resolution. Myocardial infarction was induced in eight male C57BL/6 mice aged 8–12 weeks. The ischemia reperfusion model was achieved by surgically occluding the LAD artery for 30 minutes followed by 24 hours of reperfusion. Tail vein catheters were placed for contrast administration. Iohexol 300mgI/mL was administered followed by images obtained in diastole. Iodinated lipid blood pool contrast agent was then administered, followed with images at systole and diastole. Respiratory and cardiac signals were monitored externally and used to gate the scans of free-breathing subjects. Seven control animals were scanned using the same imaging protocol. After imaging, the heart was harvested, cut into 1mm slices and stained with TTC. Post-processing analysis was performed using ITK-Snap and MATLAB. All animals demonstrated obvious delayed contrast enhancement in the left ventricular wall following the Iohexol injection. The blood pool contrast agent revealed significant changes in cardiac function quantified by 3-D volume ejection fractions. All subjects demonstrated areas of myocardial infarct in the LAD distribution on both TTC staining and micro-CT imaging. The CNT micro-CT system aids straightforward, free-breathing, prospectively-gated 3-D murine cardiac imaging. Delayed contrast enhancement allows identification of infarcted myocardium after a myocardial ischemic event. We demonstrate

  18. Adaptation of radiation field analyser (RFA) as optical CT scanner for gel dosimetry

    PubMed Central

    Brindha, S.; Kumar, Vinoth; Vasanth, S.; Ravindran Paul, B.

    2006-01-01

    Optical scanning is one of the emerging evaluation tools used for obtaining dose distributions in gel dosimetry. A radiation field analyzer adapted into an optical CT scanner to evaluate an irradiated Fricke gel has been already reported by others. This prototype optical CT scanner functions like a first generation x-ray CT scanner in the translate-rotate fashion. A similar scanner was constructed in our department for optical scanning of irradiated FX gel. At first, an aquarium was constructed and fitted into the water phantom of the RFA with provision to place the gel phantom to be scanned along with a light source and detector. The movements of the RFA were utilized to scan the gel phantom. A scan of a cuvette filled with colored solution was carried out and the resulting images were reconstructed and profiles obtained to evaluate the working of the optical scanner. A scan of the gel phantom was then obtained to evaluate the performance of the scanner. Thus a radiation field analyzer (DYNASCAN) was successfully adapted to an optical scanner to evaluate Fricke gels in our department. PMID:21206636

  19. New micro pore optics for x-ray pulsar navigation

    NASA Astrophysics Data System (ADS)

    Jin, Ge; Zhang, Qindong; Xu, Zhao; Zhang, Zhengjun; Zhang, Zhiyong; Xu, Wei; Li, Jingwen; Wang, Jian

    2016-01-01

    Solutions of focusing pulsars X-ray is a key factor in improving the accuracy of pulsar navigation. Based on the focusing principle of lobster eye grazing incidence, new micro pore optics (MPO) for pulsar navigation which is glass-substrated X-ray MPO is researched and developed. The effective areas on MPO when single grazing incidence or double grazing incidence happens are analyzed in detail and the first generation of MPO is produced. By illumination of parallel X-ray beam with 1.49keV and 8.05keV on the MPO, it is found that the crossing focusing image can be clearly visible, and the arm of cross image of 1.49keV and 8.05keV are is respectively 30mm and 17mm in length. Moreover, the center intensity was significantly higher than the cross arm which is consistent with theoretical calculation. Besides, the angular resolution of first generation of MPO with 8.05keV parallel X-ray beam illuminated is 4.19'.

  20. Micro CT Analysis of Spine Architecture in a Mouse Model of Scoliosis

    PubMed Central

    Gao, Chan; Chen, Brian P.; Sullivan, Michael B.; Hui, Jasmine; Ouellet, Jean A.; Henderson, Janet E.; Saran, Neil

    2015-01-01

    Objective: Mice homozygous for targeted deletion of the gene encoding fibroblast growth factor receptor 3 (FGFR3−/−) develop kyphoscoliosis by 2 months of age. The first objective of this study was to use high resolution X-ray to characterize curve progression in vivo and micro CT to quantify spine architecture ex vivo in FGFR3−/− mice. The second objective was to determine if slow release of the bone anabolic peptide parathyroid hormone related protein (PTHrP-1-34) from a pellet placed adjacent to the thoracic spine could inhibit progressive kyphoscoliosis. Materials and methods: Pellets loaded with placebo or PTHrP-1-34 were implanted adjacent to the thoracic spine of 1-month-old FGFR3−/− mice obtained from in house breeding. X rays were captured at monthly intervals up to 4 months to quantify curve progression using the Cobb method. High resolution post-mortem scans of FGFR3−/− and FGFR3+/+ spines, from C5/6 to L4/5, were captured to evaluate the 3D structure, rotation, and micro-architecture of the affected vertebrae. Un-decalcified and decalcified histology were performed on the apical and adjacent vertebrae of FGFR3−/− spines, and the corresponding vertebrae from FGFR3+/+ spines. Results: The mean Cobb angle was significantly greater at all ages in FGFR3−/− mice compared with wild type mice and appeared to stabilize around skeletal maturity at 4 months. 3D reconstructions of the thoracic spine of 4-month-old FGFR3−/− mice treated with PTHrP-1-34 revealed correction of left/right asymmetry, vertebral rotation, and lateral displacement compared with mice treated with placebo. Histologic analysis of the apical vertebrae confirmed correction of the asymmetry in PTHrP-1-34 treated mice, in the absence of any change in bone volume, and a significant reduction in the wedging of intervertebral disks (IVD) seen in placebo treated mice. Conclusion: Local treatment of the thoracic spine of juvenile FGFR3−/− mice with a bone anabolic

  1. Design of an optical system with large depth of field using in the micro-assembly

    NASA Astrophysics Data System (ADS)

    Li, Rong; Chang, Jun; Zhang, Zhi-jing; Ye, Xin; Zheng, Hai-jing

    2013-08-01

    Micro system currently is the mainstream of application and demand of the field of micro fabrication of civilian and national defense. Compared with the macro assembly, the requirements on location accuracy of the micro-assembly system are much higher. Usually the dimensions of the components of the micro-assembly are mostly between a few microns to several hundred microns. The general assembly precision requires for the sub-micron level. Micro system assembly is the bottleneck of micro fabrication currently. The optical stereo microscope used in the field of micro assembly technology can achieve high-resolution imaging, but the depth of field of the optical imaging system is too small. Thus it's not conducive to the three-dimensional observation process of the micro-assembly. This paper summarizes the development of micro system assembly at home and abroad firstly. Based on the study of the core features of the technology, a program is proposed which uses wave front coding technology to increase the depth of field of the optical imaging system. In the wave front coding technology, by combining traditional optical design with digital image processing creatively, the depth of field can be greatly increased, moreover, all defocus-related aberrations, such as spherical aberration, chromatic aberration, astigmatism, Ptzvel(field) curvature, distortion, and other defocus induced by the error of assembling and temperature change, can be corrected or minimized. In this paper, based on the study of theory, a set of optical microscopy imaging system is designed. This system is designed and optimized by optical design software CODE V and ZEMAX. At last, the imaging results of the traditional optical stereo microscope and the optical stereo microscope applied wave front coding technology are compared. The results show that: the method has a practical operability and the phase plate obtained by optimized has a good effect on improving the imaging quality and increasing the

  2. Implantable micro-optical semiconductor devices for optical theranostics in deep tissue

    NASA Astrophysics Data System (ADS)

    Takehara, Hiroaki; Katsuragi, Yuji; Ohta, Yasumi; Motoyama, Mayumi; Takehara, Hironari; Noda, Toshihiko; Sasagawa, Kiyotaka; Tokuda, Takashi; Ohta, Jun

    2016-04-01

    Optical therapy and diagnostics using photoactivatable molecular tools are promising approaches in medical applications; however, a method for the delivery of light deep inside biological tissues remains a challenge. Here, we present a method of illumination and detection of light using implantable micro-optical semiconductor devices. Unlike in conventional transdermal light delivery methods using low-energy light (>620 nm or near-infrared light), in our method, high-energy light (470 nm) can also be used for illumination. Implanted submillimeter-sized light-emitting diodes were found to provide sufficient illumination (0.6-4.1 mW/cm2), and a complementary metal-oxide-semiconductor image sensor enabled the detection of fluorescence signals.

  3. From the sample preparation to the volume rendering images of small animals: A step by step example of a procedure to carry out the micro-CT study of the leafhopper insect Homalodisca vitripennis (Hemiptera: Cicadellidae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Advances in micro-CT, digital computed tomography (CT) scan uses X-rays to make detailed pictures of structures inside of the body. Combining micro-CT with Digital Video Library systems, and linking this to Big Data, will change the way researchers, entomologist, and the public search and use anato...

  4. Characterization of regional deformation and material properties of the intact explanted vein by microCT and computational analysis

    PubMed Central

    Gomez, Arnold David; Zou, Huashan; Shiu, Yan-Ting; Hsu, Edward W.

    2014-01-01

    Purpose Detailed mechanical information of the vein is important to better understand remodeling of the vessel in disease states, but has been difficult to obtain due to its thinness, unique geometry, and limitations of mechanical testing. This study presents a novel method for characterizing deformation of the intact explanted vein under physiological loads and determining its material properties by combining high-resolution imaging and computational analysis. Methods High-resolution CT (microCT) was used to image an iodine-stained, excised porcine internal jugular vein sample under extension to 100% and 120% of in situ length, and inflation and 2, 10, 20 mmHg of pressure, inside a microCT-compatible hydrostatic loading chamber. Regional strains were measured with the finite element (FE) image registration method known as Hyperelastic Warping. Material properties were approximated with inverse FE characterization by optimizing stiffness-related coefficients so to match simulated strains to the experimental measurements. Results The observed morphology and regional strain of the vein were found to be relatively heterogeneous. The regional variability in the measured strain was primarily driven by geometry. Although iodine treatment may result in tissue stiffening, which requires additional investigation, it is effective in allowing detailed detection of vein geometry. Conclusions The feasibility and utility of using microCT and computational analysis to characterize mechanical responses and material properties of the vein were demonstrated. The presented method is a promising alternative or addition to mechanical testing for characterizing veins or other similarly delicate vessels in their native anatomical configuration under a wide range of realistic or simulated environmental and loading conditions. PMID:25541587

  5. Study on micro-bend light transmission performance of novel liquid-core optical fiber

    NASA Astrophysics Data System (ADS)

    Ma, Junyan; Zhao, Zhimin; Wang, Kaisheng; Guo, Linfeng

    2007-01-01

    With the increasing development of material technology and electronic integration technology, optical fiber and its using in smart structure have become hot in the field of material research. And liquid-core optical fiber is a special kind of optical fiber, which is made using liquid material as core and polymer material as optical layer and protective covering, and it has the characteristics of large core diameter, high numerical aperture, large-scope and efficient spectrum transmission and long life for using. So the liquid-core optical fiber is very suitable for spectrum cure, ultraviolet solidification, fluorescence detection, criminal investigation and evidence obtainment, etc, and especially as light transfer element in some new structures for the measurement of some signals, such as concentration, voltage, temperature, light intensity and so on. In this paper, the novel liquid-core optical fiber is self-made, and then through the test of its light transmission performance in free state, the relation between axial micro-bend and light-intensity loss are presented. When the liquid-core optical fiber is micro-bent axially, along with the axial displacement's increase, output power of light is reducing increasingly, and approximately has linear relation to micro-displacement in a range. According to the results liquid-core fiber-optic micro-bend sensor can be designed to measure micro-displacement of the tested objects. Experimental data and analysis provide experimental basis for further application of liquid-core optical fiber.

  6. Micro CT imaging assessment for spatial distribution of magnetic nanoparticles in an ex vivo thrombolysis model

    NASA Astrophysics Data System (ADS)

    Wang, Fu-Sheng; Chao, Tsi-Chian; Tu, Shu-Ju

    2012-03-01

    In recent nanotechnology development, iron-based magnetic nanoparticles (MNPs) have been used in several investigations on biomedical research for small animal experiments. Their important applications include targeted drug delivery for therapeutic purpose, contrast agent for magnetic resonance imaging, and hyperthermia treatment for tumors. These MNPs can be guided by an external magnetic field due to their physical characteristics of superparamagnetism. In a recent report, authors indicated that covalently bound recombinant tissue plasminogen activator (rtPA) to MNP (MNPrtPA) with preserved enzyme activity may be guided by a bar magnet and induce target thrombolysis in an embolic model in rats. Delivery of rtPA by binding the thrombolytic drug to MNPs will improve the possibility of the drug to be delivered under magnetic guidance and retained in a local targeted area in the circulation system. In this work, an ex vivo intravascular thrombolysis model was developed to study the impact of external magnetic field on the penetration of MNP-rtPA in the blood clot samples. The samples were then scanned by a micro CT system for quantification. Images of MNPs show strong contrast with their surrounding blood clot materials. The optimum drug loading was found when 0.5 mg/ml rtPA is conjugated with 10 mg SiO2-MNP where 98% drug was attached to the carrier with full retention of its thrombolytic activity. Effective thrombolysis with tPA bound to SiO2-MNP under magnetic guidance was demonstrated in our ex vivo model where substantial reduction in time for blood clot lysis was observed compared with control groups without magnetic field application.

  7. Functional phase-correlated micro-CT imaging of small rodents with low dose

    NASA Astrophysics Data System (ADS)

    Sawall, Stefan; Bergner, Frank; Hess, Andreas; Lapp, Robert; Mronz, Markus; Karolczak, Marek; Kachelriess, Marc

    2011-03-01

    Functional imaging of an animals thoracic region requires cardiac and respiratory gating. The information on respiratory motion and ECG required for double-gating are extracted from the rawdata and used to select the projections appropriate for a given motion phase. A conventional phase-correlated reconstruction (PC) therefore uses only a small amount of the total projections acquired. Thus the resulting images comprise a high noise level unless acquired with very high dose, and streak artifacts may occur due to the sparse angular sampling. Here, we are aiming at getting high fidelity images even for relatively low dose values. To overcome these issues we implemented an iterative reconstruction method encompassing a five-dimensional (spatial, cardiac-temporal, respiratory-temporal) edge-preserving filter. This new phase-correlated low-dose (LDPC) reconstruction method is evaluated using retrospectively-gated, contrast-enhanced micro CT data of mice. The scans performed comprise 7200 projections within 10 rotations over 5 minutes. A tube voltage of 65 kV was used resulting in an administered dose of about 500 mGy. 20 respiratory phases and 10 cardiac phases are reconstructed. Using LDPC reconstruction the image noise is typically reduced by a factor of about six and artifacts are almost removed. Reducing the number of projections available for reconstruction shows that we can get comparable image quality with only 200 mGy. LDPC enables high fidelity low-dose double-gated imaging of free breathing rodents without compromises in image quality. Compared to PC image noise is significantly reduced with LDPC and the administered dose can be reduced accordingly.

  8. Micro-CT Imaging of Denatured Chitin by Silver to Explore Honey Bee and Insect Pathologies

    PubMed Central

    Butzloff, Peter R.

    2011-01-01

    Background Chitin and cuticle coatings are important to the environmental and immune defense of honey bees and insect pollinators. Pesticides or environmental effects may target the biochemistry of insect chitin and cuticle coating. Denaturing of chitin involves a combination of deacetylation, intercalation, oxidation, Schweiger-peeling, and the formation of amine hydrochloride salt. The term “denatured chitin” calls attention to structural and property changes to the internal membranes and external carapace of organisms so that some properties affecting biological activities are diminished. Methodology/Principal Findings A case study was performed on honey bees using silver staining and microscopic computer-tomographic x-ray radiography (micro-CT). Silver nitrate formed counter-ion complexes with labile ammonium cations and reacted with amine hydrochloride. Silver was concentrated in the peritrophic membrane, on the abdomen, in the glossa, at intersegmental joints (tarsi), at wing attachments, and in tracheal air sacs. Imaged mono-esters and fatty acids from cuticle coating on external surfaces were apparently reduced by an alcohol pretreatment. Conclusions/Significance The technique provides 3-dimensional and sectional images of individual honey bees consistent with the chemistries of silver reaction and complex formation with denatured chitin. Environmental exposures and influences such as gaseous nitric oxide intercalant, trace oxidants such as ozone gas, oligosachharide salt conversion, exposure to acid rain, and chemical or biochemical denaturing by pesticides may be studied using this technique. Peritrophic membranes, which protect against food abrasion, microorganisms, and permit efficient digestion, were imaged. Apparent surface damage to the corneal lenses of compound eyes by dilute acid exposure consistent with chitin amine hydrochloride formation was imaged. The technique can contribute to existing insect pathology research, and may provide an

  9. Pore-scale simulation of carbonate dissolution in micro-CT images

    NASA Astrophysics Data System (ADS)

    Pereira Nunes, J. P.; Blunt, M. J.; Bijeljic, B.

    2016-02-01

    We present a particle-based method to simulate carbonate dissolution at the pore scale directly on the voxels of three-dimensional micro-CT images. The flow field is computed on the images by solving the incompressible Navier-Stokes equations. Rock-fluid interaction is modeled using a three-step approach: solute advection, diffusion, and reaction. Advection is simulated with a semianalytical pore-scale streamline tracing algorithm, diffusion by random walk is superimposed, while the reaction rate is defined by the flux of particles through the pore-solid interface. We derive a relationship between the local particle flux and the independently measured batch calcite dissolution rate. We validate our method against a dynamic imaging experiment where a Ketton oolite is imaged during CO2-saturated brine injection at reservoir conditions. The image-calculated increases in porosity and permeability are predicted accurately, and the spatial distribution of the dissolution front is correctly replicated. The experiments and simulations are performed at a high flow rate, in the uniform dissolution regime - Pe ≫ 1 and PeDa ≪ 1—thus extending the reaction throughout the sample. Transport is advection dominated, and dissolution is limited to regions with significant inflow of solute. We show that the sample-averaged reaction rate is 1 order of magnitude lower than that measured in batch reactors. This decrease is the result of restrictions imposed on the flux of solute to the solid surface by the heterogeneous flow field, at the millimeter scale.

  10. Micro-CT Study of Rhynchonkos stovalli (Lepospondyli, Recumbirostra), with Description of Two New Genera

    PubMed Central

    Szostakiwskyj, Matt; Pardo, Jason D.; Anderson, Jason S.

    2015-01-01

    The Early Permian recumbirostran lepospondyl Rhynchonkos stovalli has been identified as a possible close relative of caecilians due to general similarities in skull shape as well as similar robustness of the braincase, a hypothesis that implies the polyphyly of extant lissamphibians. In order to better assess this phylogenetic hypothesis, we studied the morphology of the holotype and three specimens previously attributed to R. stovalli. With the use of micro-computed x-ray tomography (μCT) we are able to completely describe the external and internal cranial morphology of these specimens, dramatically revising our knowledge of R. stovalli and recognizing two new taxa, Aletrimyti gaskillae gen et sp. n. and Dvellacanus carrolli gen et sp. n. The braincases of R. stovalli, A. gaskillae, and D. carrolli are described in detail, demonstrating detailed braincase morphology and new information on the recumbirostran supraoccipital bone. All three taxa show fossorial adaptations in the braincase, sutural articulations of skull roof bones, and in the lower jaw, but variation in cranial morphology between these three taxa may reflect different modes of head-first burrowing behaviors and capabilities. We revisit the homology of the supraoccipital, median anterior bone, and temporal bone of recumbirostrans, and discuss implications of alternate interpretations of the homology of these elements. Finally, we evaluate the characteristics previously used to unite Rhynchonkos stovalli with caecilians in light of these new data. These proposed similarities are more ambiguous than previous descriptions suggest, and result from the composite nature of previous descriptions, ambiguities in external morphology, and functional convergence between recumbirostrans and caecilians for head-first burrowing. PMID:26061187

  11. Micro-CT Study of Rhynchonkos stovalli (Lepospondyli, Recumbirostra), with Description of Two New Genera.

    PubMed

    Szostakiwskyj, Matt; Pardo, Jason D; Anderson, Jason S

    2015-01-01

    The Early Permian recumbirostran lepospondyl Rhynchonkos stovalli has been identified as a possible close relative of caecilians due to general similarities in skull shape as well as similar robustness of the braincase, a hypothesis that implies the polyphyly of extant lissamphibians. In order to better assess this phylogenetic hypothesis, we studied the morphology of the holotype and three specimens previously attributed to R. stovalli. With the use of micro-computed x-ray tomography (μCT) we are able to completely describe the external and internal cranial morphology of these specimens, dramatically revising our knowledge of R. stovalli and recognizing two new taxa, Aletrimyti gaskillae gen et sp. n. and Dvellacanus carrolli gen et sp. n. The braincases of R. stovalli, A. gaskillae, and D. carrolli are described in detail, demonstrating detailed braincase morphology and new information on the recumbirostran supraoccipital bone. All three taxa show fossorial adaptations in the braincase, sutural articulations of skull roof bones, and in the lower jaw, but variation in cranial morphology between these three taxa may reflect different modes of head-first burrowing behaviors and capabilities. We revisit the homology of the supraoccipital, median anterior bone, and temporal bone of recumbirostrans, and discuss implications of alternate interpretations of the homology of these elements. Finally, we evaluate the characteristics previously used to unite Rhynchonkos stovalli with caecilians in light of these new data. These proposed similarities are more ambiguous than previous descriptions suggest, and result from the composite nature of previous descriptions, ambiguities in external morphology, and functional convergence between recumbirostrans and caecilians for head-first burrowing. PMID:26061187

  12. Electromagnetic analysis of the IR sensor focal plane arrays of micro-optics

    NASA Astrophysics Data System (ADS)

    Sikorski, Zbigniew

    2000-04-01

    Matrices of binary micro-lenses monolithically integrated with the focal-place-arrays (FPA) of longwave IR uncooled detectors can significantly improve sensor's parameters. Surface relief of the binary micro-lenses is built of annular stair step structures of heights and widths smaller than the radiation length. Scalar diffraction theory cannot correctly describe diffraction on these micro-structures and therefore the rigorous electromagnetic theory should be applied. In this aper, we have applied the electromagnetic eignemode method to study binary micro-optics for the longwave IR FPA of 50 micrometers pixel width. We have shown that binary refractive micro-lenses outperform their diffractive counterparts allowing for detectors of 10 micrometers width. The effective refractive micro-lenses require the 8-level surface relief. Geometrical optics predictions of the focal position agree quite well width electromagnetic calculations.

  13. Knife-edge test for characterization of subnanometer deformations in micro-optical surfaces

    NASA Astrophysics Data System (ADS)

    Zamkotsian, Frederic; Dohlen, Kjetil; Lanzoni, Patrick; Mazzanti, Silvio; Michel, Marie-Laurence; Buat, Veronique; Burgarella, Denis

    1999-11-01

    Development of accurate surface characterization methods is essential for testing micro-optical components, such as micro- opto-electro-mechanical systems (MOEMS), for use in complex optical systems. We consider using an array of 16 micrometer- wide micro-mirrors as programmable slits for astronomical multi-object spectroscopy, and propose a new method based upon Foucault's knife-edge test to characterize local surface deformations of individual micro-mirrors. By measuring local slopes, the surface shape of each mirror in a micro-mirror array has been reconstructed with a sub-nanometer accuracy. In addition to low-order deformation (tilt, curvature, astigmatism), each mirror is seen to be palm-tree shaped. We have checked the validity of our knife-edge test by the micro- characterization of a conventional spherical mirror.

  14. Internal morphology of the nonsyndromic prematurely fused sagittal suture in the human skull--A preliminary micro-CT study.

    PubMed

    Nowaczewska, W; Ziółkowski, G; Dybała, B

    2015-10-01

    Although nonsyndromic craniosynostosis (NSC) of the sagittal suture is a well-known type of craniosynostosis, little is currently known about the internal morphology of this prematurely fused suture in modern humans. Recently, micro-computed tomography (micro-CT) has been applied as a new tool for the quantitative evaluation of cranial suture morphology. However, so far there are only a small number of reports concerning studies of the internal morphology of prematurely fused sagittal suture in humans using micro-CT. The primary aim of this study was to examine the internal morphology of a completely obliterated sagittal suture in NSC. Two modern human skulls were used in this study: a skull of a child (aged 10 ± 2.5 years) displaying NSC of the sagittal suture and a skull of an adult showing non-prematurely completely obliterated sagittal suture. Quantitative variables of the sagittal sutures were assessed using method proposed by the authors. Porosity, and relative thickness of three bone layers in two examined skulls (inner cortical, diploë and outer cortical) were analysed using micro-CT in three equal sections of the sagittal suture. In the case of the prematurely fused suture, there were statistically significant differences mainly in the mean values of the porosity, thickness and relative thickness of the diploë between the anterior part and the two other parts (central and posterior) of this suture. Significant differences were also observed in some of the analysed variables between the sections of the sagittal suture of the skull with NSC and the normal skull. PMID:26122169

  15. MicroPET/CT assessment of FDG uptake in brain after long-term methylphenidate treatment in nonhuman primates.

    PubMed

    Zhang, X; Newport, G D; Callicott, R; Liu, S; Thompson, J; Berridge, M S; Apana, S M; Slikker, W; Wang, C; Paule, M G

    2016-01-01

    Methylphenidate (MPH) is a psychostimulant commonly used for the treatment of Attention-Deficit Hyperactivity Disorder (ADHD). Since the long-term effects of this drug on the central nervous system (CNS) are not well understood, we conducted microPET/CT scans on young adult male rhesus monkeys (n=4/group) to gather information on brain metabolism using the uptake of [(18)F]Fluoro-2-deoxy-2-d-glucose (FDG) as a marker. Approximately two-year old, male rhesus monkeys were treated orally with MPH twice per day, five days per week (M-F) over a 6-year period. Subjects received MPH at either 2.5 or 12.5mg/kg/dose or vehicle (Prang). To minimize the acute effects of MPH on FDG uptake, microPET/CT scans were scheduled on Mondays before their first daily dosing of the week (approximately 68h since their last treatment). FDG (370±8.88MBq) was injected intravenously and 30min later microPET/CT images were obtained over 60min. Radiolabeled tracer accumulation in regions of interest (ROIs) in the prefrontal cortex, temporal cortex, striatum and cerebellum were converted into Standard Uptake Values (SUVs). Compared to the control group, the uptake of FDG in the cerebellum was significantly decreased in both the low and high dose groups. These preliminary data demonstrate that microPET imaging is capable of distinguishing differences in retention of FDG in the brains of NHPs treated chronically with MPH and suggests that this approach may provide a minimally invasive biomarker for exploring the effects of chronic MPH treatment on aspects of brain function. PMID:27307090

  16. An overview of micro-optical components and system technology: bulk, planar, and thin-film for laser initiated devices

    NASA Astrophysics Data System (ADS)

    Lizotte, Todd

    2010-08-01

    There are a number of attractive micro optical elements or combinations of elements that are currently used or could be employed in optically initiated ordnance systems. When taking a broad-spectrum examination of optically initiated devices, the required key parameters become obviously straightforward for micro optics. Plainly stated, micro optics need to be simple, inexpensive, reliable, robust and compatible within their operational environment. This presentation focuses on the variety of optical elements and components available in the market place today that could be used to realize micro-optical beam shaping and delivery systems for optically initiated devices. A number of micro optical elements will be presented with specific bulk, planar optical and thin film optical devices, such as diffractive optics, micro prisms, axicons, waveguides, micro lenses, beam splitters and gratings. Further descriptions will be presented on the subject of coupling light from a laser beam into a multimode optical fiber. The use of micro optics for collimation of the laser source and conditioning of the laser beam to achieve the highest efficiency and matching the optical fiber NA will be explained. An emphasis on making these optical assemblies compact and rugged will be highlighted.

  17. Development of silicon optics for an integrated micro-optical system-on-a-chip

    NASA Astrophysics Data System (ADS)

    Ng, David C.; Kandasamy, Sasikaran; Skafidas, Efstratios

    2013-12-01

    Development of silicon-based passive optical components such as reflectors, waveguides, and beam splitters coupled with active elements such as light emitters and detectors enable miniaturisation of a low-cost system-on-a-chip sensing device. In this work, we investigate methods to fabricate passive silicon elements on a chip. We use a combination of wet and dry etching techniques to realise angled and vertical sidewalls normal to the surface of a silicon wafer, respectively. For wet etching, we used Triton-X, a surfactant, added to an alkaline solution TMAH as the etchant. This allows perfect 45° inclined sidewalls to be fabricated. Dry etching using DRIE is to be performed on the reverse-side of the same wafer to realize through-hole vias with straight vertical sidewalls. A final Au metal layer can then be coated onto the sidewalls to realize reflective surfaces. Photolithography masks used in the wet and dry etch processes were designed and fabricated. By careful alignment of these masks using a mask aligner, we can fabricate a combination of inclined and vertical sidewalls to build optical reflectors and beam splitters with complex geometries. When integrated with active Si-optical devices, a fully integrated micro-optical system-on-a-chip can be realised.

  18. Multifunctional micro-optical elements for laser beam homogenizing and beam shaping

    NASA Astrophysics Data System (ADS)

    Bich, A.; Rieck, J.; Dumouchel, C.; Roth, S.; Weible, K. J.; Eisner, M.; Voelkel, R.; Zimmermann, M.; Rank, M.; Schmidt, M.; Bitterli, R.; Ramanan, N.; Ruffieux, P.; Scharf, T.; Noell, W.; Herzig, H.-P.; De Rooij, Nico

    2008-02-01

    Refractive, diffractive and reflective micro-optical elements for laser beam shaping and homogenizing have been manufactured and tested. The presented multifunctional optical elements are used for shaping arbitrary laser beam profiles into a variety of geometries like, a homogeneous spot array or line pattern, a laser light sheet or flat-top intensity profiles. The resulting profiles are strongly influenced by the beam properties of the laser and by diffraction and interference effects at the micro-optical elements. We present general design rules for beam shaping and homogenizing. We demonstrate the application of such multifunctional micro-optical elements for a variety of applications from micro-laser machining to laser diagnostic systems.

  19. Postcranial skeletal pneumaticity: a case study in the use of quantitative microCT to assess vertebral structure in birds.

    PubMed

    Fajardo, R J; Hernandez, E; O'Connor, P M

    2007-07-01

    Limb elements in birds have been characterized as exhibiting a reduction in trabecular bone, thinner cortices and decreased bending strength when pneumatized, yet it is unclear if these characteristics generalize to the axial skeleton. Thin section techniques, the traditional gold standard for bone structure studies, have most commonly been applied to the study of avian bone. This destructive technique, however, makes it subsequently impossible to use the same samples in experimental testing systems that allow researchers to correlate structure with the mechanical properties of the bone. Micro-computed tomography (microCT), a non-destructive X-ray imaging technique, can be used to assess the effect of pneumatization on vertebral cortical and trabecular bone through virtual extraction and structural quantification of each tissue type. We conducted a preliminary investigation of the application of microCT methods to the study of cortical and trabecular bone structure in a small sample of pneumatic and apneumatic thoracic vertebrae. The sample consisted of two similar-sized anatids, Aix sponsa (n = 7) and Oxyura jamaicensis (n = 5). Volumes of interest were created that contoured (outlined) the boundaries of the ventral cortical bone shell, the trabecular compartment and the whole centrum (cortical bone + trabecular bone), and allowed independent structural analysis of each volume of interest. Results indicated that bone volume fraction of the whole centrum was significantly higher in the apneumatic O. jamaicensis than in the pneumatized A. sponsa (A. sponsa = 36%, O. jamaicensis = 48%, P < 0.05). In contrast, trabecular bone volume fraction was similar between the two species. The ventral cortical bone shell was approximately 23% thinner (P < 0.05) in A. sponsa (0.133 mm) compared with apneumatic O. jamaicensis (0.172 mm). This case study demonstrates that microCT is a powerful non-destructive imaging technique that may be applied to the three-dimensional study of

  20. Synthesis and CT imaging of gold nanostructures with tunable optical absorption spectroscopy

    NASA Astrophysics Data System (ADS)

    Zhang, Jinfeng; Feng, Chao; Deng, Yida; Liu, Lei; Wu, Yating; Zhong, Cheng; Hu, Wenbin

    2014-09-01

    With a slight modification of typical seed-mediated synthesis of gold nanoparticles (GNPs), a wide range of aspect ratios for nanorods, spherical and dumbbell-like GNPs were synthesized. Their unique optical properties such as localized surface plasmon resonance related to the distinct morphologies were investigated. On the basis of the preparation condition for short gold nanorods (GNRs), by varying the amounts of ascorbic acid, the morphological transition from rod to dumbbell occurred and the growth mechanism was proposed. Compared with conventional iodine-based contrast agents, GNPs exhibited preferable x-ray CT imaging effect, and are good candidates for x-ray CT contrast agents in biomedical applications.

  1. Polymer-based micro-deformable mirror for adaptive optics

    NASA Astrophysics Data System (ADS)

    Liotard, Arnaud; Zamkotsian, Frederic; Conedera, Veronique; Fabre, Norbert; Lanzoni, Patrick; Camon, Henri; Chazallet, Frederic

    2006-01-01

    Highly performing adaptive optical (AO) systems are mandatory for next generation giant telescopes as well as next generation instrumentation for 10m-class telescopes, for studying new fields like circumstellar disks and extra-solar planets. These systems require deformable mirrors with very challenging parameters, including number of actuators up to 250 000 and inter-actuator spacing around 500μm. MOEMS-based devices are promising for future deformable mirrors. We are currently developing a micro-deformable mirror (MDM) based on an array of electrostatic actuators with attachment posts to a continuous mirror on top. In order to reach large stroke for low driving voltage, the originality of our approach lies in the elaboration of a sacrificial layer and of a structural layer made of polymer materials. We have developed the first polymer piston-motion actuator: a 10μm thick mobile plate with four springs attached to the substrate, and with an air gap of 10μm exhibits a piston motion of 2μm for 30V, and measured resonance frequency of 6.5kHz is well suited for AO systems. The electrostatic force provides a non-linear actuation, while AO systems are based on linear matrices operations. We have successfully developed a dedicated 14-bit electronics in order to "linearize" the actuation. Actual location of the actuator versus expected location of the actuator is obtained with a standard deviation of 21 nm. Comparison with FEM models shows very good agreement, and design of a complete polymer-based MDM has been done.

  2. Particle-Tracking Microrheology Using Micro-Optical Coherence Tomography.

    PubMed

    Chu, Kengyeh K; Mojahed, Diana; Fernandez, Courtney M; Li, Yao; Liu, Linbo; Wilsterman, Eric J; Diephuis, Bradford; Birket, Susan E; Bowers, Hannah; Martin Solomon, G; Schuster, Benjamin S; Hanes, Justin; Rowe, Steven M; Tearney, Guillermo J

    2016-09-01

    Clinical manifestations of cystic fibrosis (CF) result from an increase in the viscosity of the mucus secreted by epithelial cells that line the airways. Particle-tracking microrheology (PTM) is a widely accepted means of determining the viscoelastic properties of CF mucus, providing an improved understanding of this disease as well as an avenue to assess the efficacies of pharmacologic therapies aimed at decreasing mucus viscosity. Among its advantages, PTM allows the measurement of small volumes, which was recently utilized for an in situ study of CF mucus formed by airway cell cultures. Typically, particle tracks are obtained from fluorescence microscopy video images, although this limits one's ability to distinguish particles by depth in a heterogeneous environment. Here, by performing PTM with high-resolution micro-optical coherence tomography (μOCT), we were able to characterize the viscoelastic properties of mucus, which enables simultaneous measurement of rheology with mucociliary transport parameters that we previously determined using μOCT. We obtained an accurate characterization of dextran solutions and observed a statistically significant difference in the viscosities of mucus secreted by normal and CF human airway cell cultures. We further characterized the effects of noise and imaging parameters on the sensitivity of μOCT-PTM by performing theoretical and numerical analyses, which show that our system can accurately quantify viscosities over the range that is characteristic of CF mucus. As a sensitive rheometry technique that requires very small fluid quantities, μOCT-PTM could also be generally applied to interrogate the viscosity of biological media such as blood or the vitreous humor of the eye in situ. PMID:27602733

  3. Multichannel fiber optic broadband video communication system for monitoring CT/MR examinations

    NASA Astrophysics Data System (ADS)

    Huang, H. K.; Kangarloo, Hooshang; Tecotzky, Raymond H.; Cheng, Xin; Vanderweit, Don

    1991-05-01

    The Department of Radiological Sciences, UCLA operates five MR and four CT scanners located in three different buildings and two mobile sites. We have designed and implemented a multi-channel fiber optic broadband video communication system connecting these scanners together. This system consists of baseband fiber optic transmitters and receivers, a multiplexing headend, and broadband fiber optic transmitters and receivers. It can serve up to 5 km. The video signal from each scanner is sent through a baseband fiber optic link to the headend, where it is frequency modulated and distributed over broadband fiber optic links. A receiver, consisting of a demodulator, a TV monitor, and a channel selector, is placed at fourteen strategic locations including the fiber optic hub rooms, chest, neuroradiology, abdomen, bone, gastrointestinal, genitourinary, and pediatric reading rooms as well as scheduling rooms. A radiologist can use any of these fourteen receivers to view a patient''s CT/MR image in real time by selecting the proper channel assigned to the scanner, and use the telephone to communicate with the technologist to monitor the examination. This fiber optic broadband video communication system has been integrated into daily clinical use.

  4. Preliminary evaluation of optical CT scanning versus MRI for nPAG gel dosimetry: The Ghent experience

    NASA Astrophysics Data System (ADS)

    Vandecasteele, Jan; DeDeene, Yves

    2009-05-01

    The aim of this study was to evaluate fast laser-scanning optical CT versus MRI for an nPAG gel dosimeter in terms of accuracy and precision. Three small cylindrical volumetric gel phantoms were fabricated and irradiated with photon beams. The gel dosimeters were scanned with an MR scanner and an in house developed laser scanning optical CT scanner. A comparison between MRI and optical CT scanning was performed based on the reconstructed images. Preliminary results show a fair correspondence in the MRI acquired and optical CT acquired dose maps. Still, ringing artifacts contaminate the reconstructed optical CT images. These may be related to sub-pixel misalignments between the blank projection and the acquired transmission projection of the gel phantom. Another artifact may be caused by refraction near the edges of the field. Further optimisation of our optical CT scanner is required to obtain the same accuracy as with MRI. To make a comparison between the two imaging modalities in terms of precision, the intrinsic dose precision on readout (IPD) was calculated which is independent of spatial resolution and acquisition time. It is shown that optical CT has a better intrinsic dose precision.

  5. Volume of sealer in the apical region of teeth filled by different techniques: a micro-CT analysis.

    PubMed

    Araújo, Vanessa Lessa; Souza-Gabriel, Aline Evangelista; Cruz Filho, Antônio Miranda da; Pécora, Jesus Djalma; Silva, Ricardo Gariba

    2016-01-01

    The volume of sealer in the apical 1 mm of teeth filled using different techniques was evaluated by micro-commuted tomography (micro-CT). Sixty-four maxillary central incisors were prepared using NiTi rotary instruments. Teeth were randomly distributed into four groups according to root canal sealers (AH Plus, Endofill, Sealapex, and Sealer 26) and subdivided into two subgroups according to the filling techniques (active and passive lateral condensation; n = 8 each). Subsequently, teeth were examined using the 1174 SkyScan micro-CT device. Images were reconstructed using the NRecon software, and the sealer volume (mm3) in the apical region was analyzed using the two-way ANOVA and post-hoc Student-Newman-Keuls test (α = 0.05). The lowest volume of sealer was observed in teeth filled with Sealapex (0.100 ± 0.009) and Endofill (0.103 ± 0.010). The highest volume was observed in teeth filled with AH Plus (0.112 ± 0.008) and Sealer 26 (0.109 ± 0.018) (p > 0.05). Regarding the filling technique, a lower sealer volume was observed using the active lateral condensation technique compared with that using the passive lateral condensation technique (0.100 ± 0.010 vs. 0.111 ± 0.012) (p < 0.05). Therefore, the lowest volume of sealer was observed in teeth filled with Sealapex and Endofill using the active lateral condensation technique. PMID:27050936

  6. Design of a micro lapping system based on double-feedback control algorithm for manufacturing optical micro components

    NASA Astrophysics Data System (ADS)

    Che, Lin; Li, Guo; Wang, Bo; Ding, Fei; Mao, Xing; Dong, Wenxia

    2014-08-01

    This paper presents a micro lapping machine tool, which is dedicated for manufacturing the high-precision optical micro components with 3-D micro structures. And it can remove the damaged surface layer efficiently.In order to control machining process precisely, a double-feedback control system strategy is proposed and implemented. Lapping force signal from the clamp feeds back at the same time with position signal from grating scale close-looped devices. With the function of position keeping , a dual-stage drive micro-displacement servo system is used to provide the desired performance in the vertical feeding direction. Random lapping trace is formed with combinations of two mutually-perpendicular horizontal liner motion. A clamp with the function of micro force detection is designed to monitor the machining process and control the lapping force. Based on force feedback, a tool auto-checking strategy is conducted to realize the tool checking in limited tiny space. Corresponding experiments are undertaken to test the properties of the machine tool.And, the optical micro components are manufactured successfully. The optical components are measured and analysised before and after processing. The experimental results show that the position-keeping accuracy of the dual-stage feed drive system can reach to ±0.02μm, the resolution of motion control can reach to 20nm.The Sa value of the processed component can reach 0.0882um. Surface quality can be improved obviously and the damaged surface layer is removed efficiently.The theoretical and experimental results show the validity of the machine tool and the control algorithm.

  7. Deep proton writing: a powerful rapid prototyping technology for various micro-optical components

    NASA Astrophysics Data System (ADS)

    Van Erps, Jürgen; Vervaeke, Michael; Debaes, Christof; Ottevaere, Heidi; Van Overmeire, Sara; Hermanne, Alex; Thienpont, Hugo

    2010-05-01

    One of the important challenges for the deployment of the emerging breed of nanotechnology components is interfacing them with the external world, preferably accomplished with low-cost micro-optical devices. For the fabrication of this kind of micro-optical modules, we make use of deep proton writing (DPW) as a generic rapid prototyping technology. DPW consists of bombarding polymer samples with swift protons, which results after chemical processing steps in high quality micro-optical components. The strength of the DPW micro-machining technology is the ability to fabricate monolithic building blocks that include micro-optical and mechanical functionalities which can be precisely integrated into more complex photonic systems. In this paper we give an overview of the process steps of the technology and we present several examples of micro-optical and micro-mechanical components, fabricated through DPW, targeting applications in optical interconnections and in bio-photonics. These include: high-precision 2-D fiber connectors, out-of-plane coupling structures featuring high-quality 45° and curved micro-mirrors, arrays of high aspect ratio micro-pillars, and fluorescence and absorption detection bio-photonics modules. While DPW is clearly not a mass fabrication technique as such, one of its assets is that once the master component has been prototyped, a metal mould can be generated from the DPW master by applying electroplating. After removal of the plastic master, this metal mould can be used as a shim in a final microinjection moulding or hot embossing step. This way, the master component can be mass-produced at low cost in a wide variety of high-tech plastics.

  8. A Novel Procedure for Rapid Imaging of Adult Mouse Brains with MicroCT Using Iodine-Based Contrast

    PubMed Central

    Anderson, Ryan; Maga, A. Murat

    2015-01-01

    High-resolution Magnetic Resonance Imaging (MRI) has been the primary modality for obtaining 3D cross-sectional anatomical information in animals for soft tissue, particularly brain. However, costs associated with MRI can be considerably high for large phenotypic screens for gross differences in the structure of the brain due to pathology and/or experimental manipulations. MicroCT (mCT), especially benchtop mCT, is becoming a common laboratory equipment with throughput rates equal or faster than any form of high-resolution MRI at lower costs. Here we explore adapting previously developed contrast based mCT to image adult mouse brains in-situ. We show that 2% weight per volume (w/v) iodine-potassium iodide solution can be successfully used to image adult mouse brains within 48 hours post-mortem when a structural support matrix is used. We demonstrate that hydrogel can be effectively used as a perfusant which limits the tissue shrinkage due to iodine. PMID:26571123

  9. Non-rigid registration of small animal skeletons from micro-CT using 3D shape context

    NASA Astrophysics Data System (ADS)

    Xiao, Di; Bourgeat, Pierrick; Fripp, Jurgen; Acosta Tamayo, Oscar; Gregoire, Marie Claude; Salvado, Olivier

    2009-02-01

    Small animal registration is an important step for molecular image analysis. Skeleton registration from whole-body or only partial micro Computerized Tomography (CT) image is often performed to match individual rats to atlases and templates, for example to identify organs in positron emission tomography (PET). In this paper, we extend the shape context matching technique for 3D surface registration and apply it for rat hind limb skeleton registration from CT images. Using the proposed method, after standard affine iterative closest point (ICP) registration, correspondences between the 3D points from sour and target objects were robustly found and used to deform the limb skeleton surface with thin-plate-spline (TPS). Experiments are described using phantoms and actual rat hind limb skeletons. On animals, mean square errors were decreased by the proposed registration compared to that of its initial alignment. Visually, skeletons were successfully registered even in cases of very different animal poses.

  10. Note: A resonating reflector-based optical system for motion measurement in micro-cantilever arrays

    SciTech Connect

    Sathishkumar, P.; Punyabrahma, P.; Sri Muthu Mrinalini, R.; Jayanth, G. R.

    2015-09-15

    A robust, compact optical measurement unit for motion measurement in micro-cantilever arrays enables development of portable micro-cantilever sensors. This paper reports on an optical beam deflection-based system to measure the deflection of micro-cantilevers in an array that employs a single laser source, a single detector, and a resonating reflector to scan the measurement laser across the array. A strategy is also proposed to extract the deflection of individual cantilevers from the acquired data. The proposed system and measurement strategy are experimentally evaluated and demonstrated to measure motion of multiple cantilevers in an array.

  11. Note: A resonating reflector-based optical system for motion measurement in micro-cantilever arrays.

    PubMed

    Sathishkumar, P; Punyabrahma, P; Mrinalini, R Sri Muthu; Jayanth, G R

    2015-09-01

    A robust, compact optical measurement unit for motion measurement in micro-cantilever arrays enables development of portable micro-cantilever sensors. This paper reports on an optical beam deflection-based system to measure the deflection of micro-cantilevers in an array that employs a single laser source, a single detector, and a resonating reflector to scan the measurement laser across the array. A strategy is also proposed to extract the deflection of individual cantilevers from the acquired data. The proposed system and measurement strategy are experimentally evaluated and demonstrated to measure motion of multiple cantilevers in an array. PMID:26429493

  12. Note: A resonating reflector-based optical system for motion measurement in micro-cantilever arrays

    NASA Astrophysics Data System (ADS)

    Sathishkumar, P.; Punyabrahma, P.; Sri Muthu Mrinalini, R.; Jayanth, G. R.

    2015-09-01

    A robust, compact optical measurement unit for motion measurement in micro-cantilever arrays enables development of portable micro-cantilever sensors. This paper reports on an optical beam deflection-based system to measure the deflection of micro-cantilevers in an array that employs a single laser source, a single detector, and a resonating reflector to scan the measurement laser across the array. A strategy is also proposed to extract the deflection of individual cantilevers from the acquired data. The proposed system and measurement strategy are experimentally evaluated and demonstrated to measure motion of multiple cantilevers in an array.

  13. High Efficiency Coupling of Optical Fibres with SU8 Micro-droplet Using Laser Welding Process

    NASA Astrophysics Data System (ADS)

    Yardi, Seema; Gupta, Ankur; Sundriyal, Poonam; Bhatt, Geeta; Kant, Rishi; Boolchandani, D.; Bhattacharya, Shantanu

    2016-09-01

    Apart from micro- structure fabrication, ablation, lithography etc., lasers find a lot of utility in various areas like precision joining, device fabrication, local heat delivery for surface texturing and local change of microstructure fabrication of standalone optical micro-devices (like microspheres, micro-prisms, micro-scale ring resonators, optical switches etc). There is a wide utility of such systems in chemical/ biochemical diagnostics and also communications where the standalone optical devices exist at a commercial scale but chip based devices with printed optics are necessary due to coupling issues between printed structures and external optics. This paper demonstrates a novel fabrication strategy used to join standalone optical fibres to microchip based printed optics using a simple SU8 drop. The fabrication process is deployed for fiber to fiber optical coupling and coupling between fiber and printed SU-8 waveguides. A CO2 laser is used to locally heat the coupling made up of SU8 material. Optimization of various dimensional parameters using design of experiments (DOE) on the bonded assembly has been performed as a function of laser power, speed, cycle control, spot size so on so forth. Exclusive optical [RF] modelling has been performed to estimate the transmissibility of the optical fibers bonded to each other on a surface with SU8. Our studies indicate the formation of a Whispering gallery mode (WGM) across the micro-droplet leading to high transmissibility of the signal. Through this work we have thus been able to develop a method of fabrication for optical coupling of standalone fibers or coupling of on-chip optics with off-chip illumination/detection.

  14. High Efficiency Coupling of Optical Fibres with SU8 Micro-droplet Using Laser Welding Process

    NASA Astrophysics Data System (ADS)

    Yardi, Seema; Gupta, Ankur; Sundriyal, Poonam; Bhatt, Geeta; Kant, Rishi; Boolchandani, D.; Bhattacharya, Shantanu

    2016-04-01

    Apart from micro- structure fabrication, ablation, lithography etc., lasers find a lot of utility in various areas like precision joining, device fabrication, local heat delivery for surface texturing and local change of microstructure fabrication of standalone optical micro-devices (like microspheres, micro-prisms, micro-scale ring resonators, optical switches etc). There is a wide utility of such systems in chemical/ biochemical diagnostics and also communications where the standalone optical devices exist at a commercial scale but chip based devices with printed optics are necessary due to coupling issues between printed structures and external optics. This paper demonstrates a novel fabrication strategy used to join standalone optical fibres to microchip based printed optics using a simple SU8 drop. The fabrication process is deployed for fiber to fiber optical coupling and coupling between fiber and printed SU-8 waveguides. A CO2 laser is used to locally heat the coupling made up of SU8 material. Optimization of various dimensional parameters using design of experiments (DOE) on the bonded assembly has been performed as a function of laser power, speed, cycle control, spot size so on so forth. Exclusive optical [RF] modelling has been performed to estimate the transmissibility of the optical fibers bonded to each other on a surface with SU8. Our studies indicate the formation of a Whispering gallery mode (WGM) across the micro-droplet leading to high transmissibility of the signal. Through this work we have thus been able to develop a method of fabrication for optical coupling of standalone fibers or coupling of on-chip optics with off-chip illumination/detection.

  15. Analyzing the human liver vascular architecture by combining vascular corrosion casting and micro-CT scanning: a feasibility study

    PubMed Central

    Debbaut, Charlotte; Segers, Patrick; Cornillie, Pieter; Casteleyn, Christophe; Dierick, Manuel; Laleman, Wim; Monbaliu, Diethard

    2014-01-01

    Although a full understanding of the hepatic circulation is one of the keys to successfully perform liver surgery and to elucidate liver pathology, relatively little is known about the functional organization of the liver vasculature. Therefore, we materialized and visualized the human hepatic vasculature at different scales, and performed a morphological analysis by combining vascular corrosion casting with novel micro-computer tomography (CT) and image analysis techniques. A human liver vascular corrosion cast was obtained by simultaneous resin injection in the hepatic artery (HA) and portal vein (PV). A high resolution (110 μm) micro-CT scan of the total cast allowed gathering detailed macrovascular data. Subsequently, a mesocirculation sample (starting at generation 5; 88 × 68 × 80 mm³) and a microcirculation sample (terminal vessels including sinusoids; 2.0 × 1.5 × 1.7 mm³) were dissected and imaged at a 71-μm and 2.6-μm resolution, respectively. Segmentations and 3D reconstructions allowed quantifying the macro-and mesoscale branching topology, and geometrical features of HA, PV and hepatic venous trees up to 13 generations (radii ranging from 13.2 mm to 80 μm; lengths from 74.4 mm to 0.74 mm), as well as microvascular characteristics (mean sinusoidal radius of 6.63 μm). Combining corrosion casting and micro-CT imaging allows quantifying the branching topology and geometrical features of hepatic trees using a multiscale approach from the macro-down to the microcirculation. This may lead to novel insights into liver circulation, such as internal blood flow distributions and anatomical consequences of pathologies (e.g. cirrhosis). PMID:24433401

  16. High-throughput multiple-mouse imaging with micro-PET/CT for whole-skeleton assessment

    PubMed Central

    Yagi, Masashi; Arentsen, Luke; Shanley, Ryan M; Hui, Susanta K

    2014-01-01

    Recent studies have proven that skeleton-wide functional assessment is essential to comprehensively understand physiological aspects of the skeletal system. Therefore, in contrast to regional imaging studies utilizing a multiple-animal holder (mouse hotel), we attempted to develop and characterize a multiple-mouse imaging system with micro-PET/CT for high-throughput whole-skeleton assessment. Using items found in a laboratory, a simple mouse hotel that houses four mice linked with gas anesthesia was constructed. A mouse-simulating phantom was used to measure uniformity in a cross sectional area and flatness (Amax/Amin*100) along the axial, radial and tangential directions, where Amax and Amin are maximum and minimum activity concentration in the profile, respectively. Fourteen mice were used for single- or multiple-micro-PET/CT scans. NaF uptake was measured at eight skeletal sites (skull to tibia). Skeletal 18F activities measured with mice in the mouse hotel were within 1.6±4% (mean±standard deviation) of those measured with mice in the single-mouse holder. Single-holder scanning yields slightly better uniformity and flatness over the hotel. Compared to use of the single-mouse holder, scanning with the mouse hotel reduced study time (by 65%), decreased the number of scans (four-fold), reduced cost, required less computer storage space (40%), and maximized 18F usage. The mouse hotel allows high-throughput, quantitatively equivalent scanning compared to the single-mouse holder for micro-PET/CT imaging for whole-skeleton assessment of mice. PMID:24998335

  17. MicroCT-Based Skeletal Models for Use in Tomographic Voxel Phantoms for Radiological Protection

    SciTech Connect

    Bolch, Wesley

    2010-03-30

    The University of Florida (UF) proposes to develop two high-resolution image-based skeletal dosimetry models for direct use by ICRP Committee 2’s Task Group on Dose Calculation in their forthcoming Reference Voxel Male (RVM) and Reference Voxel Female (RVF) whole-body dosimetry phantoms. These two phantoms are CT-based, and thus do not have the image resolution to delineate and perform radiation transport modeling of the individual marrow cavities and bone trabeculae throughout their skeletal structures. Furthermore, new and innovative 3D microimaging techniques will now be required for the skeletal tissues following Committee 2’s revision of the target tissues of relevance for radiogenic bone cancer induction. This target tissue had been defined in ICRP Publication 30 as a 10-μm cell layer on all bone surfaces of trabecular and cortical bone. The revised target tissue is now a 50-μm layer within the marrow cavities of trabecular bone only and is exclusive of the marrow adipocytes. Clearly, this new definition requires the use of 3D microimages of the trabecular architecture not available from past 2D optical studies of the adult skeleton. With our recent acquisition of two relatively young cadavers (males of age 18-years and 40-years), we will develop a series of reference skeletal models that can be directly applied to (1) the new ICRP reference voxel man and female phantoms developed for the ICRP, and (2) pediatric phantoms developed to target the ICRP reference children. Dosimetry data to be developed will include absorbed fractions for internal beta and alpha-particle sources, as well as photon and neutron fluence-to-dose response functions for direct use in external dosimetry studies of the ICRP reference workers and members of the general public

  18. Fiber-optic OCT sensor guided “SMART” micro-forceps for microsurgery

    PubMed Central

    Song, Cheol; Park, Dong Yong; Gehlbach, Peter L.; Park, Seong Jin; Kang, Jin U.

    2013-01-01

    A handheld Smart Micromanipulation Aided Robotic-surgery Tool (SMART) micro-forceps guided by a fiber-optic common-path optical coherence tomography (CP-OCT) sensor is presented. A fiber-optic CP-OCT distance and motion sensor is integrated into the shaft of a micro-forceps. The tool tip position is manipulated longitudinally through a closed loop control using a piezoelectric motor. This novel forceps design could significantly enhance safety, efficiency and surgical outcomes. The basic grasping and peeling functions of the micro-forceps are evaluated in dry phantoms and in a biological tissue model. As compared to freehand use, targeted grasping and peeling performance assisted by active tremor compensation, significantly improves micro-forceps user performance. PMID:23847730

  19. Femtosecond laser-induced microstructures in glasses and applications in micro-optics.

    PubMed

    Qiu, Jianrong

    2004-01-01

    Femtosecond laser has been widely used in microscopic modifications to materials due to its ultra-short laser pulse and ultrahigh light intensity. When a transparent material e.g. glass is irradiated by a tightly focused femtosecond laser, the photo-induced reaction is expected to occur only near the focused part of the laser beam inside the glass due to the multiphoton processes. We observed various induced structures e.g. color center defects, refractive index change, micro-void and micro-crack, in glasses after the femtosecond laser irradiation. In this paper, we review the femtosecond laser induced phenomena and discuss the mechanisms of the observed phenomena. We also introduce the fabrication of various micro-optical components, e.g. optical waveguide, micro-grating, micro-lens, fiber attenuator, 3-dimensional optical memory by using the femtosecond laser-induced structures. The femtosecond laser will open new possibilities in the fabrication of micro-optical components with various optical functions. PMID:15057868

  20. Design, fabrication and testing of hierarchical micro-optical structures and systems

    NASA Astrophysics Data System (ADS)

    Cannistra, Aaron Thomas

    Micro-optical systems are becoming essential components in imaging, sensing, communications, computing, and other applications. Optically based designs are replacing electronic, chemical and mechanical systems for a variety of reasons, including low power consumption, reduced maintenance, and faster operation. However, as the number and variety of applications increases, micro-optical system designs are becoming smaller, more integrated, and more complicated. Micro and nano-optical systems found in nature, such as the imaging systems found in many insects and crustaceans, can have highly integrated optical structures that vary in size by orders of magnitude. These systems incorporate components such as compound lenses, anti-reflective lens surface structuring, spectral filters, and polarization selective elements. For animals, these hybrid optical systems capable of many optical functions in a compact package have been repeatedly selected during the evolutionary process. Understanding the advantages of these designs gives motivation for synthetic optical systems with comparable functionality. However, alternative fabrication methods that deviate from conventional processes are needed to create such systems. Further complicating the issue, the resulting device geometry may not be readily compatible with existing measurement techniques. This dissertation explores several nontraditional fabrication techniques for optical components with hierarchical geometries and measurement techniques to evaluate performance of such components. A micro-transfer molding process is found to produce high-fidelity micro-optical structures and is used to fabricate a spectral filter on a curved surface. By using a custom measurement setup we demonstrate that the spectral filter retains functionality despite the nontraditional geometry. A compound lens is fabricated using similar fabrication techniques and the imaging performance is analyzed. A spray coating technique for photoresist

  1. RADIOCHEMICAL ANALYSIS BY HIGH SENSITIVITY DUAL-OPTIC MICRO X-RAY FLUORESCENCE

    EPA Science Inventory

    A novel dual-optic micro X-ray fluorescence instrument will be developed to do radiochemical analysis of high-level radioactive wastes at DOE sites such as Savannah River Site and Hanford. This concept incorporates new X-ray optical elements such as monolithic polycapillaries and...

  2. Initial experience with optical-CT scanning of RadBall Dosimeters.

    PubMed

    Oldham, M; Clift, C; Thomas, A; Farfan, E; Foley, T; Jannik, T; Adamovics, J; Holmes, C; Stanley, S

    2010-12-01

    The RadBall dosimeter is a novel device for providing 3-D information on the magnitude and distribution of contaminant sources of unknown radiation in a given hot cell, glovebox, or contaminated room. The device is presently under evaluation by the National Nuclear Lab (NNL, UK) and the Savannah River National Laboratory (SRNL, US), for application as a diagnostic device for such unknown contaminants in the nuclear industry. A critical component of the technique is imaging the dose distribution recorded in the RadBall using optical-CT scanning. Here we present our initial investigations using the Duke Mid-sized Optical-CT Scanner (DMOS) to image dose distributions deposited in RadBalls exposed to a variety of radiation treatments. PMID:21218190

  3. Initial experience with optical-CT scanning of RadBall Dosimeters

    PubMed Central

    Oldham, M; Clift, C; Thomas, A; Farfan, E; Foley, T; Jannik, T; Adamovics, J; Holmes, C; Stanley, S

    2010-01-01

    The RadBall dosimeter is a novel device for providing 3-D information on the magnitude and distribution of contaminant sources of unknown radiation in a given hot cell, glovebox, or contaminated room. The device is presently under evaluation by the National Nuclear Lab (NNL, UK) and the Savannah River National Laboratory (SRNL, US), for application as a diagnostic device for such unknown contaminants in the nuclear industry. A critical component of the technique is imaging the dose distribution recorded in the RadBall using optical-CT scanning. Here we present our initial investigations using the Duke Mid-sized Optical-CT Scanner (DMOS) to image dose distributions deposited in RadBalls exposed to a variety of radiation treatments. PMID:21218190

  4. Initial experience with optical-CT scanning of RadBall Dosimeters

    NASA Astrophysics Data System (ADS)

    Oldham, M.; Clift, C.; Thomas, A.; Farfan, E.; Foley, T.; Jannik, T.; Adamovics J.; Holmes, C.; Stanley, S.

    2010-11-01

    The RadBall dosimeter is a novel device for providing 3-D information on the magnitude and distribution of contaminant sources of unknown radiation in a given hot cell, glovebox, or contaminated room. The device is presently under evaluation by the National Nuclear Lab (NNL, UK) and the Savannah River National Laboratory (SRNL, US), for application as a diagnostic device for such unknown contaminants in the nuclear industry. A critical component of the technique is imaging the dose distribution recorded in the RadBall using optical-CT scanning. Here we present our initial investigations using the Duke Mid-sized Optical-CT Scanner (DMOS) to image dose distributions deposited in RadBalls exposed to a variety of radiation treatments.

  5. Applying microCT and 3D visualization to Jurassic silicified conifer seed cones: A virtual advantage over thin-sectioning1

    PubMed Central

    Gee, Carole T.

    2013-01-01

    • Premise of the study: As an alternative to conventional thin-sectioning, which destroys fossil material, high-resolution X-ray computed tomography (also called microtomography or microCT) integrated with scientific visualization, three-dimensional (3D) image segmentation, size analysis, and computer animation is explored as a nondestructive method of imaging the internal anatomy of 150-million-year-old conifer seed cones from the Late Jurassic Morrison Formation, USA, and of recent and other fossil cones. • Methods: MicroCT was carried out on cones using a General Electric phoenix v|tome|x s 240D, and resulting projections were processed with visualization software to produce image stacks of serial single sections for two-dimensional (2D) visualization, 3D segmented reconstructions with targeted structures in color, and computer animations. • Results: If preserved in differing densities, microCT produced images of internal fossil tissues that showed important characters such as seed phyllotaxy or number of seeds per cone scale. Color segmentation of deeply embedded seeds highlighted the arrangement of seeds in spirals. MicroCT of recent cones was even more effective. • Conclusions: This is the first paper on microCT integrated with 3D segmentation and computer animation applied to silicified seed cones, which resulted in excellent 2D serial sections and segmented 3D reconstructions, revealing features requisite to cone identification and understanding of strobilus construction. PMID:25202495

  6. Investigation of a low-cost optical-CT system with minimal refractive index-matching fluid

    NASA Astrophysics Data System (ADS)

    Bache, S.; Malcolm, J.; Adamovics, J.; Oldham, M.

    2015-01-01

    Optical computed tomography (optical-CT) is a method for visualizing 3dimensional dose distributions in radiochromic dosimeters. Projection images are acquired by collimating a visible light point source into parallel-beam geometry and imaging differential absorption through the sample dosimeter. Practical challenges involved in optical-CT imaging were addressed through the investigation of an in-house Fresnel-based optical-CT system with considerably less refractive index-matching fluid. The "DFOS" (Duke Fresnel-based Optical- CT System) system differed from current optical-CT systems by replacing cumbersome convex telecentric lenses with a lighter and much less expensive Fresnel system. A second major modification was the replacement of the refractive index-matching fluid bath with a solid polyurethane tank. PRESAGE radiochromic dosimeters were irradiated with orthogonal parallel-opposed treatments and dose distributions were readout by the DFOS system and compared to both treatment planning software prediction and two other in-house optical-CT systems. Gamma index passing rate at the 3%/3mm threshold in relation to Eclipse treatment planning software for the treatment was 92.2%%, compared to 96.8% and 95.6% for two other systems featuring a traditional setup. The DFOS system showed promise for 3D dosimetry, but the performance is still substantially inferior at present to the gold-standard systems.

  7. Anisotropic third-order optical nonlinearity of a single ZnO micro/nanowire.

    PubMed

    Wang, Kai; Zhou, Jun; Yuan, Longyan; Tao, Yuting; Chen, Jian; Lu, Peixiang; Wang, Zhong Lin

    2012-02-01

    We report a systematic study about the anisotropic third-order optical nonlinearity of a single ZnO micro/nanowire by using the Z-scan method with a femtosecond laser. The two-photon absorption coefficient and nonlinear refraction index, which are measured as a function of polarization angle and sample orientation angle, exhibit oscillation curves with a period of π/2, indicating a highly polarized optical nonlinearity of the ZnO micro/nanowire. Further studies show that the polarized optical nonlinearity of the ZnO micro/nanowire is highly size-dependent. The results indicate that ZnO nanowire has great potential in applications of nanolasers, all-optical switching and polarization-sensitive photodetectors. PMID:22214490

  8. Characterization of a parallel beam CCD optical-CT apparatus for 3D radiation dosimetry

    NASA Astrophysics Data System (ADS)

    Krstajić, Nikola; Doran, Simon J.

    2006-12-01

    This paper describes the initial steps we have taken in establishing CCD based optical-CT as a viable alternative for 3-D radiation dosimetry. First, we compare the optical density (OD) measurements from a high quality test target and variable neutral density filter (VNDF). A modulation transfer function (MTF) of individual projections is derived for three positions of the sinusoidal test target within the scanning tank. Our CCD is then characterized in terms of its signal-to-noise ratio (SNR). Finally, a sample reconstruction of a scan of a PRESAGETM (registered trademark of Heuris Pharma, NJ, Skillman, USA.) dosimeter is given, demonstrating the capabilities of the apparatus.

  9. Reproducibilty test of ferrous xylenol orange gel dose response with optical cone beam CT scanning

    NASA Astrophysics Data System (ADS)

    Jordan, K.; Battista, J.

    2004-01-01

    Our previous studies of ferrous xylenol orange gelatin gel have revealed a spatial dependence to the dose response of samples contained in 10 cm diameter cylinders. Dose response is defined as change in optical attenuation coefficient divided by the dose (units cm-1 Gy-1). This set of experiments was conducted to determine the reproducibility of our preparation, irradiation and full 3D optical cone beam CT scanning. The data provided an internal check of a larger storage time-dose response dependence study.

  10. Novel optical en/decoder based on micro-ring-reflector

    NASA Astrophysics Data System (ADS)

    Wang, Xu; Gao, Zhensen

    2012-02-01

    We propose a novel reconfigurable optical en/decoder to generate and recognize two-dimensional (2-D) optical codes for coherent optical-code-division-multiple-access (OCDMA) application. The proposed device is based on cascaded coupled micro-ring reflectors, which can enable simultaneous tuning of the fast wavelength hopping and spectral phase encoding code patterns. The coding performance is verified by simulation.

  11. Novel optical en/decoder based on micro-ring-reflector

    NASA Astrophysics Data System (ADS)

    Wang, Xu; Gao, Zhensen

    2011-11-01

    We propose a novel reconfigurable optical en/decoder to generate and recognize two-dimensional (2-D) optical codes for coherent optical-code-division-multiple-access (OCDMA) application. The proposed device is based on cascaded coupled micro-ring reflectors, which can enable simultaneous tuning of the fast wavelength hopping and spectral phase encoding code patterns. The coding performance is verified by simulation.

  12. Sensing nanometric displacement of a micro-/nano-fiber induced by optical forces by use of white light interferometry

    NASA Astrophysics Data System (ADS)

    Qiu, Weiqia; Huang, Hankai; Yu, Jianhui; Dong, Huazhuo; Chen, Zhe; Lu, Huihui

    2015-07-01

    Sensing the nanometric displacement of a micro-/nano-fiber induced by optical forces is a key technology to study optical forces and optical momentum. When the gap between a micro-/nano-fiber and glass substrate becomes down to micrometer scale or less, a white light interference was observed. The gap changes when optical force arising from the propagating pump light along the micro-/nano-fiber causes a transversal nanometric displacement of a micro-/nanofiber, resulting in movement of the interferometric fringes. Therefore this movement of the interferometric fringes can be used to sense the nanometric displacement of the micro-/nano-fiber induced by optical forces. Experimental results show that the resolutions of this method can reach 7.27nm/pixel for tilted angle 0.8o between the micro-/nano-fiber and substrate. It is concluded that the white light interferometry method is suitable for measuring the weak optical force.

  13. Progress on the development of active micro-structured optical arrays for x-ray optics

    NASA Astrophysics Data System (ADS)

    Rodriguez Sanmartin, Daniel; Zhang, Dou; Button, Tim; Atkins, Carolyn; Doel, Peter; Wang, Hongchang; Brooks, David; Feldman, Charlotte; Willingale, Richard; Michette, Alan; Pfauntsch, Slawka; Sahraei, Shahin; Shand, Matthew; James, Ady; Dunare, Camelia; Stevenson, Tom; Parkes, William; Smith, Andy

    2009-08-01

    The Smart X-Ray Optics (SXO) project comprises a U.K.-based consortium developing active/adaptive micro-structured optical arrays (MOAs). These devices are designed to focus X-rays using grazing incidence reflection through consecutive aligned arrays of microscopic channels etched in silicon. The silicon channels have been produced both by dry and wet etching, the latter providing smoother channel walls. Adaptability is achieved using piezoelectric actuators, which bend the device and therefore change its focal distance. We aim to achieve a 5 cm radius of curvature which can provide a suitable focal length using a tandem pair MOA configuration. Finite Element Analysis (FEA) modelling has been carried out for the optimization of the MOA device design, consider different types of actuators (unimorph, bimorph and active fibre composites), and different Si/piezoelectric absolute and relative thicknesses. Prototype devices have been manufactured using a Viscous Plastic Processing Process for the piezoelectric actuators and dry etched silicon channels, bonded together using a low shrinkage adhesive. Characterisation techniques have been developed in order to evaluate the device performance in terms of the bending of the MOA channels produced by the actuators. This paper evaluates the progress to date on the actuation of the MOAs, comparing FEA modelling with the results obtained for different prototype structures.

  14. Optical model of optical volume diffusion plate: polycarbonate plate doped with silicon dioxide micro particle

    NASA Astrophysics Data System (ADS)

    Lin, Che-Chu; Yu, Yeh-Wei; Chen, Yu-Heng; Le, Ming; Sun, Ching-Cherng; Chen, Jong-Wu; Cheng, Chih-Yuan

    2015-09-01

    High-efficiency diffusers play important roles in modern optical industry. The applications include back-light of television, uniform lighting, glare suppression, lighting decoration, and so on. In this paper, we develop optical volume diffusion plate using polycarbonate (PC) plate doped with silicon dioxide (SiO2) micro particle. The scattering distribution of diffusers is an important factor in the lighting design. Commercial detectors often measure the bidirectional scattering distribution function (BSDF) by a scanning and time-consuming method. We have proposed screen imaging synthesis (SIS) system in 2012, and it can easily measure the bidirectional transmittance distribution function (BTDF). In this paper, the optimized formula is presented to correct the vignetting effect and scattering effect caused by the screen. A quasi-Lambertian screen is made to enhance precision. Finally, we combine the SIS system with the rotation controller, and a semi-automatic measuring machine is built. The SIS generation can measure BSDF of the samples precisely and easily. In order to reduce glare problems and design a luminaire with uniform light distribution, we usually use diffusers to modulate the luminaire.

  15. Micro-channels in the mastoid anatomy. Indications of a separate blood supply of the air cell system mucosa by micro-CT scanning.

    PubMed

    Cros, Olivier; Borga, Magnus; Pauwels, Elin; Dirckx, Joris J J; Gaihede, Michael

    2013-07-01

    The mastoid air cell system has traditionally been considered to have a passive role in gas exchange and pressure regulation of the middle ear possibly with some acoustic function. However, more evidence has focused on the mucosa of the mastoid, which may play a more active role in regulation of middle ear pressure. In this study we have applied micro-CT scanning on a series of three human temporal bones. This approach greatly enhances the resolution (40-60 μm), so that we have discovered anatomical details, which has not been reported earlier. Thus, qualitative analysis using volume rendering has demonstrated notable micro-channels connecting the surface of the compact bone directly to the mastoid air cells as well as forming a network of connections between the air cells. Quantitative analysis on 2D slices was employed to determine the average diameter of these micro-channels (158 μm; range = 40-440 μm) as well as their density at a localized area (average = 75 cm(-2); range = 64-97 cm(-2)). These channels are hypothesized to contain a separate vascular supply for the mastoid mucosa. However, future studies of the histological structure of the micro-channels are warranted to confirm the hypothesis. Studies on the mastoid mucosa and its blood supply may improve our knowledge of its physiological properties, which may have important implications for our understanding of the pressure regulation of the middle ear. This article is part of a special issue entitled "MEMRO 2012". PMID:23518400

  16. Geometrical Properties of Pore Structure in Berea Sandstone under Pressurization with Micro Focus X-Ray CT

    NASA Astrophysics Data System (ADS)

    Takahashi, M.; Urushimatsu, Y.

    2008-12-01

    Three dimensional geometry and connectivity of pore space play a fundamental role in governing fluid transport properties of porous media. Total porosity and pore size distribution have been obtained through mercury intrusion porosimetry and gas absorption method, but the spatial and three dimensional information of pore geometry were difficult to obtain. To visualize in detail the manner of deformation in sedimentary rocks under various confining pressure and pore pressure, we used a micro focus X-ray CT system to obtain three dimensional images with high resolution of 5 micron. A new pressure vessel was developed to simultaneously supply both confining pressure and pore pressure to cylindrical rock specimen. Berea sandstone specimen of 10mm diameter and 20mm length was deformed hydrostatically. The diameters at every 15 degree angle were measured under the various conditions of confining pressure and pore pressures. The average diameter decreased monotonically with increasing effective confining pressure. Sensitive orientation around the specimen diameter with large deformation was recognized under pressurization. In addition, to quantify the flow-relevant geometrical properties of the pore structure, we utilized three dimensional data of Berea sandstone obtained with micro focus X-ray CT. We present measured distributions of pore size, throat size, channel length, coordination number, and of correlations between pore and throat geometry.

  17. Computer-aided analysis of airway trees in micro-CT scans of ex vivo porcine lung tissue.

    PubMed

    Bauer, Christian; Adam, Ryan; Stoltz, David A; Beichel, Reinhard R

    2012-12-01

    We present a highly automated approach to obtain detailed structural models of airway trees from ex vivo porcine lung tissue imaged with a high resolution micro-CT scanner. Such information is an important prerequisite to systematically study models of lung disease that affect airway morphology. The method initially identifies all tubular airway-like structures in the lung. In a second processing step, these structures are grouped into a connected airway tree by utilizing prior knowledge about the airway trees branching pattern. The method was evaluated on 12 micro-CT scans from four tracheal lobes of piglets imaged at three different inflation levels. For this study, two control piglets and two cystic fibrosis piglets were used. For systematic validation of our approach, an airway nomenclature was developed for the pig airway tree. Out of more than 3500 airway tree segments assessed during evaluation, 88.45% were correctly identified by the method. No false positive airway branches were found. A detailed performance analysis for different airway tree hierarchy levels, lung inflation levels and piglets with/without cystic fibrosis is presented in the paper. PMID:22959430

  18. Airway segmentation and analysis for the study of mouse models of lung disease using micro-CT

    NASA Astrophysics Data System (ADS)

    Artaechevarria, X.; Pérez-Martín, D.; Ceresa, M.; de Biurrun, G.; Blanco, D.; Montuenga, L. M.; van Ginneken, B.; Ortiz-de-Solorzano, C.; Muñoz-Barrutia, A.

    2009-11-01

    Animal models of lung disease are gaining importance in understanding the underlying mechanisms of diseases such as emphysema and lung cancer. Micro-CT allows in vivo imaging of these models, thus permitting the study of the progression of the disease or the effect of therapeutic drugs in longitudinal studies. Automated analysis of micro-CT images can be helpful to understand the physiology of diseased lungs, especially when combined with measurements of respiratory system input impedance. In this work, we present a fast and robust murine airway segmentation and reconstruction algorithm. The algorithm is based on a propagating fast marching wavefront that, as it grows, divides the tree into segments. We devised a number of specific rules to guarantee that the front propagates only inside the airways and to avoid leaking into the parenchyma. The algorithm was tested on normal mice, a mouse model of chronic inflammation and a mouse model of emphysema. A comparison with manual segmentations of two independent observers shows that the specificity and sensitivity values of our method are comparable to the inter-observer variability, and radius measurements of the mainstem bronchi reveal significant differences between healthy and diseased mice. Combining measurements of the automatically segmented airways with the parameters of the constant phase model provides extra information on how disease affects lung function.

  19. Quantitative 3D shape description of dust particles from treated seeds by means of X-ray micro-CT.

    PubMed

    Devarrewaere, Wouter; Foqué, Dieter; Heimbach, Udo; Cantre, Dennis; Nicolai, Bart; Nuyttens, David; Verboven, Pieter

    2015-06-16

    Crop seeds are often treated with pesticides before planting. Pesticide-laden dust particles can be abraded from the seed coating during planting and expelled into the environment, damaging nontarget organisms. Drift of these dust particles depends on their size, shape and density. In this work, we used X-ray micro-CT to examine the size, shape (sphericity) and porosity of dust particles from treated seeds of various crops. The dust properties quantified in this work were very variable in different crops. This variability may be a result of seed morphology, seed batch, treatment composition, treatment technology, seed cleaning or an interaction of these factors. The intraparticle porosity of seed treatment dust particles varied from 0.02 to 0.51 according to the crop and generally increased with particle size. Calculated settling velocities demonstrated that accounting for particle shape and porosity is important in drift studies. For example, the settling velocity of dust particles with an equivalent diameter of 200 μm may vary between 0.1 and 1.2 m s(-1), depending on their shape and density. Our analysis shows that in a wind velocity of 5 m s(-1), such particles ejected at 1 m height may travel between 4 and 50 m from the source before settling. Although micro-CT is a valuable tool to characterize dust particles, the current image processing methodology limits the number of particles that can be analyzed. PMID:26023822

  20. Investigation of signal thresholding to reduce the effects of instrument noise of an EMCCD based micro-CT system

    NASA Astrophysics Data System (ADS)

    Podgorsak, Alexander R.; Bysani Krishnakumar, Sumukh; Setlur Nagesh, S. V.; Bednarek, Daniel R.; Rudin, Stephen; Ionita, Ciprian N.

    2016-03-01

    This project investigated the signal thresholding effectiveness at reducing the instrument noise of an electron multiplying charged coupled device (EMCCD) based micro-CT system at low x-ray exposure levels. Scans of a mouse spine and an iodine phantom were taken using an EMCCD detector coupled with a micro-CT system. An iodine filter of 4 mg/cm2 area density was placed in the beam. The output signal was thresholded using some multiple of the inherent background noise. For each threshold, 100, 200, and 300 frames were summed for each projection to evaluate the effect on the reconstructed image. The projection images from the scans were compared using line profiles and their SNR. Our results indicate that, as the threshold was increased, the line profiles of the projection images showed less statistical variation, but also lower signal levels, so that the SNR of the projection images decreased as the threshold increased. When the line profile of a projection image obtained using a signal threshold is compared with one obtained using energy integrating mode, the profile obtained using thresholding had less variation than that obtained using energy integration, which indicates less instrument noise. The SNR at the edges of the scan object is higher in the thresholded images when compared with the energy integrated projection images. We conclude that thresholding the output signal from an EMCCD detector at low x-ray exposure levels is an effective method to reduce the instrument noise of an EMCCD detector.

  1. Integrated resonant micro-optical gyroscope and method of fabrication

    DOEpatents

    Vawter, G. Allen; Zubrzycki, Walter J.; Guo, Junpeng; Sullivan, Charles T.

    2006-09-12

    An integrated optic gyroscope is disclosed which is based on a photonic integrated circuit (PIC) having a bidirectional laser source, a pair of optical waveguide phase modulators and a pair of waveguide photodetectors. The PIC can be connected to a passive ring resonator formed either as a coil of optical fiber or as a coiled optical waveguide. The lasing output from each end of the bidirectional laser source is phase modulated and directed around the passive ring resonator in two counterpropagating directions, with a portion of the lasing output then being detected to determine a rotation rate for the integrated optical gyroscope. The coiled optical waveguide can be formed on a silicon, glass or quartz substrate with a silicon nitride core and a silica cladding, while the PIC includes a plurality of III V compound semiconductor layers including one or more quantum well layers which are disordered in the phase modulators and to form passive optical waveguides.

  2. Building a bone μCT images atlas for micro-architecture recognition

    NASA Astrophysics Data System (ADS)

    Freuchet, E.; Recur, B.; Guédon, Jp.; Kingston, A.; Autrusseau, F.; Amouriq, Y.

    2015-03-01

    Trabecular bone and its micro-architecture are of prime importance for health. Changes of bone micro-architecture are linked to different pathological situations like osteoporosis and begin now to be understood. In a previous paper, we started to investigate the relationships between bone and vessels and we also proposed to build a Bone Atlas. This study describes how to proceed for the elaboration and use of such an atlas. Here, we restricted the Atlas to legs (tibia, femur) of rats in order to work with well known geometry of the bone micro-architecture. From only 6 acquired bone, 132 trabecular bone volumes were generated using simple mathematical morphology tools. The variety and veracity of the created micro-architecture volumes is presented in this paper. Medical application and final goal would be to determinate bone micro-architecture with some angulated radiographs (3 or 4) and to easily diagnose the bone status (healthy, pathological or healing bone...).

  3. A micro-PET/CT approach using O-(2-[18F]fluoroethyl)-L-tyrosine in an experimental animal model of F98 glioma for BNCT.

    PubMed

    Menichetti, L; Petroni, D; Panetta, D; Burchielli, S; Bortolussi, Silva; Matteucci, M; Pascali, G; Del Turco, S; Del Guerra, A; Altieri, S; Salvadori, P A

    2011-12-01

    The present study focuses on a micro-PET/CT application to be used for experimental Boron Neutron Capture Therapy (BNCT), which integrates, in the same frame, micro-CT derived anatomy and PET radiotracer distribution. Preliminary results have demonstrated that (18)F-fluoroethyl-tyrosine (FET)/PET allows the identification of the extent of cerebral lesions in F98 tumor bearing rat. Neutron autoradiography and α-spectrometry on axial tissues slices confirmed the tumor localization and extraction, after the administration of fructose-boronophenylalanine (BPA). Therefore, FET-PET approach can be used to assess the transport, the net influx, and the accumulation of FET, as an aromatic amino acid analog of BPA, in experimental animal model. Coregistered micro-CT images allowed the accurate morphological localization of the radiotracer distribution and its potential use for experimental BNCT. PMID:21458282

  4. Establishing a process of irradiating small animal brain using a CyberKnife and a microCT scanner

    SciTech Connect

    Kim, Haksoo; Welford, Scott; Fabien, Jeffrey; Zheng, Yiran; Yuan, Jake; Brindle, James; Yao, Min; Lo, Simon; Wessels, Barry; Machtay, Mitchell; Sohn, Jason W.; Sloan, Andrew

    2014-02-15

    Purpose: Establish and validate a process of accurately irradiating small animals using the CyberKnife G4 System (version 8.5) with treatment plans designed to irradiate a hemisphere of a mouse brain based on microCT scanner images. Methods: These experiments consisted of four parts: (1) building a mouse phantom for intensity modulated radiotherapy (IMRT) quality assurance (QA), (2) proving usability of a microCT for treatment planning, (3) fabricating a small animal positioning system for use with the CyberKnife's image guided radiotherapy (IGRT) system, and (4)in vivo verification of targeting accuracy. A set of solid water mouse phantoms was designed and fabricated, with radiochromic films (RCF) positioned in selected planes to measure delivered doses. After down-sampling for treatment planning compatibility, a CT image set of a phantom was imported into the CyberKnife treatment planning system—MultiPlan (ver. 3.5.2). A 0.5 cm diameter sphere was contoured within the phantom to represent a hemispherical section of a mouse brain. A nude mouse was scanned in an alpha cradle using a microCT scanner (cone-beam, 157 × 149 pixels slices, 0.2 mm longitudinal slice thickness). Based on the results of our positional accuracy study, a planning treatment volume (PTV) was created. A stereotactic body mold of the mouse was “printed” using a 3D printer laying UV curable acrylic plastic. Printer instructions were based on exported contours of the mouse's skin. Positional reproducibility in the mold was checked by measuring ten CT scans. To verify accurate dose delivery in vivo, six mice were irradiated in the mold with a 4 mm target contour and a 2 mm PTV margin to 3 Gy and sacrificed within 20 min to avoid DNA repair. The brain was sliced and stained for analysis. Results: For the IMRT QA using a set of phantoms, the planned dose (6 Gy to the calculation point) was compared to the delivered dose measured via film and analyzed using Gamma analysis (3% and 3 mm). A

  5. Self optical motion-tracking for endoscopic optical coherence tomography probe using micro-beamsplitter probe

    NASA Astrophysics Data System (ADS)

    Li, Jiawen; Zhang, Jun; Chou, Lidek; Wang, Alex; Jing, Joseph; Chen, Zhongping

    2014-03-01

    Long range optical coherence tomography (OCT), with its high speed, high resolution, non-ionized properties and cross-sectional imaging capability, is suitable for upper airway lumen imaging. To render 2D OCT datasets to true 3D anatomy, additional tools are usually applied, such as X-ray guidance or a magnetic sensor. X-ray increases ionizing radiation. A magnetic sensor either increases probe size or requires an additional pull-back of the tracking sensor through the body cavity. In order to overcome these limitations, we present a novel tracking method using a 1.5 mm×1.5mm, 90/10-ratio micro-beamsplitter: 10% light through the beam-splitter is used for motion tracking and 90% light is used for regular OCT imaging and motion tracking. Two signals corresponding to these two split-beams that pass through different optical path length delays are obtained by the detector simultaneously. Using the two split beams' returned signals from the same marker line, the 2D inclination angle of each step is computed. By calculating the 2D inclination angle of each step and then connecting the translational displacements of each step, we can obtain the 2D motion trajectory of the probe. With two marker lines on the probe sheath, 3D inclination angles can be determined and then used for 3D trajectory reconstruction. We tested the accuracy of trajectory reconstruction using the probe and demonstrated the feasibility of the design for structure reconstruction of a biological sample using a porcine trachea specimen. This optical-tracking probe has the potential to be made as small as an outer diameter of 1.0mm, which is ideal for upper airway imaging.

  6. Sol-gel prepared glass for micro-optical elements and arrays

    NASA Astrophysics Data System (ADS)

    Haruvy, Yair; Gilath, Irith; Maniewictz, M.; Eisenberg, Naftali P.

    1997-09-01

    Sol-gel processes of metal alkoxides involve hydrolysis of the alkoxy groups and condensation to a 3-D oxide glass network. Volume reduction of the drying gel typically results in cracking, unless sufficient relaxation is allowed to take place. Further, the common shrinkage by a factor of 2.5 and higher imposes great difficulty to obtain dimensional accuracy in thus prepared micro-optical elements. The new fast sol-gel method enables facile preparation of siloxane-based glassy materials in which polymerization is completed within minutes and curing within a few hours. The optical quality of thin films obtained by the fast sol-gel method and the ease of preparation makes this method technologically and economically attractive for micro-lenses and micro-optical arrays by replication. Micro-optical arrays are highly patterned, including sharp curvatures of small radii. This necessitates to study primarily two aspects of the sol-gel replication process: (1) the chemical constitution of the sol-gel and the reaction pathway that ensures prompt adhesion to the template during the process. (2) the surface chemical adaptation of the template that allows timing of adhesion and release of the produced elements. The adaptation of this process to the desired replication is described. Thence, the results of preliminary fabrication of micro-optical elements and arrays by this method are shown and their features discussed.

  7. Iterative 4D cardiac micro-CT image reconstruction using an adaptive spatio-temporal sparsity prior

    NASA Astrophysics Data System (ADS)

    Ritschl, Ludwig; Sawall, Stefan; Knaup, Michael; Hess, Andreas; Kachelrieß, Marc

    2012-03-01

    Temporal-correlated image reconstruction, also known as 4D CT image reconstruction, is a big challenge in computed tomography. The reasons for incorporating the temporal domain into the reconstruction are motions of the scanned object, which would otherwise lead to motion artifacts. The standard method for 4D CT image reconstruction is extracting single motion phases and reconstructing them separately. These reconstructions can suffer from undersampling artifacts due to the low number of used projections in each phase. There are different iterative methods which try to incorporate some a priori knowledge to compensate for these artifacts. In this paper we want to follow this strategy. The cost function we use is a higher dimensional cost function which accounts for the sparseness of the measured signal in the spatial and temporal directions. This leads to the definition of a higher dimensional total variation. The method is validated using in vivo cardiac micro-CT mouse data. Additionally, we compare the results to phase-correlated reconstructions using the FDK algorithm and a total variation constrained reconstruction, where the total variation term is only defined in the spatial domain. The reconstructed datasets show strong improvements in terms of artifact reduction and low-contrast resolution compared to other methods. Thereby the temporal resolution of the reconstructed signal is not affected.

  8. Coregistration of datasets from a micro-SPECT/CT and a preclinical 1.5 T MRI

    NASA Astrophysics Data System (ADS)

    Dillenseger, J.-P.; Guillaud, B.; Goetz, C.; Sayeh, A.; Schimpf, R.; Constantinesco, A.; Choquet, P.

    2013-02-01

    An universal tool was designed for small animal SPECT/CT/MR coregistration. It was tested on a preclinical MRI (OPTImouse, RS2D, Bischwiller, France) and a micro-SPECT/CT (eXplore speCZT Vision 120, GE, Waukesha, USA), closed to each other, thanks to the short extension of the MRI magnet fringe field. The tool consists of a curved catheter describing many rigid loops, and fixed on a plastic sheet. During acquisitions, it is placed around the animal, in an isolated imaging cell, and filled with a solution containing iodine, copper sulfate and radioisotope. Multimodality imaging is achieved sequentially by moving the cell from one system to the other, in about 20 s. Acquisitions on phantom demonstrate the resolution accuracy of the coregistration process. Whole body trimodal SPECT/CT/MR acquisitions on live mice were coregistrated as well. A simple, cheap tool, easy to fill, could efficiently help for rigid coregistration of preclinical images, acquired on separate imaging apparatus.

  9. Imaging of pore networks and related interfaces in soil systems by using high resolution X-ray micro-CT

    NASA Astrophysics Data System (ADS)

    Zacher, Gerhard; Eickhorst, Thilo; Schmidt, Hannes; Halisch, Matthias

    2016-04-01

    Today's high-resolution X-ray CT with its powerful tubes and great detail detectability lends itself naturally to geological and pedological applications. Those include the non-destructive interior examination and textural analysis of rock and soil samples and their permeability and porosity - to name only a few. Especially spatial distribution and geometry of pores, mineral phases and fractures are important for the evaluation of hydrologic and aeration properties in soils as well as for root development in the soil matrix. The possibility to visualize a whole soil aggregate or root tissue in a non-destructive way is undoubtedly the most valuable feature of this type of analysis and is a new area for routine application of high resolution X-ray micro-CT. The paper outlines recent developments in hard- and software requirements for high resolution CT. It highlights several pedological applications which were performed with the phoenix nanotom m, the first 180 kV nanofocus CT system tailored specifically for extremely high-resolution scans of variable sized samples with voxel-resolutions down to < 300 nm. In addition very good contrast resolution can be obtained as well which is necessary to distinguish biogenic material in soil aggregates amongst others. We will address visualization and quantification of porous networks in 3D in different environmental samples ranging from clastic sedimentary rock to soil cores and individual soil aggregates. As several processes and habitat functions are related to various pore sizes imaging of the intact soil matrix will be presented on different scales of interest - from the mm-scale representing the connectivity of macro-pores down to the micro-scale representing the space of microbial habitats. Therefore, soils were impregnated with resin and scanned via X-ray CT. Scans at higher resolution were obtained from sub-volumes cut from the entire resin impregnated block and from crop roots surrounded by rhizosphere soil. Within the

  10. Intrathoracic tumour motion estimation from CT imaging using the 3D optical flow method

    NASA Astrophysics Data System (ADS)

    Guerrero, Thomas; Zhang, Geoffrey; Huang, Tzung-Chi; Lin, Kang-Ping

    2004-09-01

    The purpose of this work was to develop and validate an automated method for intrathoracic tumour motion estimation from breath-hold computed tomography (BH CT) imaging using the three-dimensional optical flow method (3D OFM). A modified 3D OFM algorithm provided 3D displacement vectors for each voxel which were used to map tumour voxels on expiration BH CT onto inspiration BH CT images. A thoracic phantom and simulated expiration/inspiration BH CT pairs were used for validation. The 3D OFM was applied to the measured inspiration and expiration BH CT images from one lung cancer and one oesophageal cancer patient. The resulting displacements were plotted in histogram format and analysed to provide insight regarding the tumour motion. The phantom tumour displacement was measured as 1.20 and 2.40 cm with full-width at tenth maximum (FWTM) for the distribution of displacement estimates of 0.008 and 0.006 cm, respectively. The maximum error of any single voxel's motion estimate was 1.1 mm along the z-dimension or approximately one-third of the z-dimension voxel size. The simulated BH CT pairs revealed an rms error of less than 0.25 mm. The displacement of the oesophageal tumours was nonuniform and up to 1.4 cm, this was a new finding. A lung tumour maximum displacement of 2.4 cm was found in the case evaluated. In conclusion, 3D OFM provided an accurate estimation of intrathoracic tumour motion, with estimated errors less than the voxel dimension in a simulated motion phantom study. Surprisingly, oesophageal tumour motion was large and nonuniform, with greatest motion occurring at the gastro-oesophageal junction. Presented at The IASTED Second International Conference on Biomedical Engineering (BioMED 2004), Innsbruck, Austria, 16-18 February 2004.

  11. Prospective-gated cardiac micro-CT imaging of free-breathing mice using carbon nanotube field emission x-ray

    SciTech Connect

    Cao Guohua; Burk, Laurel M.; Lee, Yueh Z.; Calderon-Colon, Xiomara; Sultana, Shabana; Lu Jianping; Zhou, Otto

    2010-10-15

    Purpose: Carbon nanotube (CNT) based field emission x-ray source technology has recently been investigated for diagnostic imaging applications because of its attractive characteristics including electronic programmability, fast switching, distributed source, and multiplexing. The purpose of this article is to demonstrate the potential of this technology for high-resolution prospective-gated cardiac micro-CT imaging. Methods: A dynamic cone-beam micro-CT scanner was constructed using a rotating gantry, a stationary mouse bed, a flat-panel detector, and a sealed CNT based microfocus x-ray source. The compact single-beam CNT x-ray source was operated at 50 KVp and 2 mA anode current with 100 {mu}mx100 {mu}m effective focal spot size. Using an intravenously administered iodinated blood-pool contrast agent, prospective cardiac and respiratory-gated micro-CT images of beating mouse hearts were obtained from ten anesthetized free-breathing mice in their natural position. Four-dimensional cardiac images were also obtained by gating the image acquisition to different phases in the cardiac cycle. Results: High-resolution CT images of beating mouse hearts were obtained at 15 ms temporal resolution and 6.2 lp/mm spatial resolution at 10% of system MTF. The images were reconstructed at 76 {mu}m isotropic voxel size. The data acquisition time for two cardiac phases was 44{+-}9 min. The CT values observed within the ventricles and the ventricle wall were 455{+-}49 and 120{+-}48 HU, respectively. The entrance dose for the acquisition of a single phase of the cardiac cycle was 0.10 Gy. Conclusions: A high-resolution dynamic micro-CT scanner was developed from a compact CNT microfocus x-ray source and its feasibility for prospective-gated cardiac micro-CT imaging of free-breathing mice under their natural position was demonstrated.

  12. Dynamic Micro-CT Study of Fracture-Matrix Flow During Capillary Imbibition in Layered Berea Sandstone

    NASA Astrophysics Data System (ADS)

    Karpyn, Z. T.; Halleck, P. M.; Grader, A. S.; Elsworth, D.

    2004-12-01

    Studies concerning flow in fractured rocks have important applications in hydrocarbon recovery, hydrogeology, and environmental remediation of subsurface spills, such as DNAPLs. To properly design immiscible flow processes in those systems, it is crucial to understand fracture-matrix transfer mechanisms. The goal of this work is to provide a mechanistic description of capillary-driven imbibition in fractured media and the effects of fluid occupancy in the fracture and of matrix heterogeneity on saturation distribution. Capillary imbibition experiments where performed in a layered Berea sample, 4.75 cm long and 2.54 cm in diameter, with a single longitudinal fracture. The artificially created fracture was oriented perpendicular to the natural bedding of the rock. The sample was initially vacuum saturated with non-wetting phase. Small amounts of a wetting phase were introduced into the bottom of the fracture, allowing it to imbibe and exchange places with the resident non-wetting phase through the fracture-matrix interface. Progress of the imbibition process was monitored after each injection using high-resolution Micro Computed Tomography (CT). Micro-CT also provided non-destructive means to characterize the fracture structure and rock properties. A series of simulation scenarios were also tested using a commercially available package developed by the Computer Modeling Group (CMG). Experimental observations combined with simulation results indicate that the fracture itself exhibits a strong capillary behavior. Its rough-walled nature, leads to a two-phase flow similar to that in porous media. Experimental observations also show a strong correspondence between fluid invasion in the matrix and variations in porosity in the rock's bedding planes. Our results suggest that different porosities correspond to different permeabilities and capillary pressure curves. Fluid accessibility in the fracture space is also an important factor governing imbibition in fractured media

  13. Evaluating the dose effects of a longitudinal micro-CT study on pulmonary tissue in C57BL/6 mice

    NASA Astrophysics Data System (ADS)

    Detombe, Sarah A.; Dunmore-Buyze, Joy; Petrov, Ivailo E.; Drangova, Maria

    2012-03-01

    Background: Micro-computed tomography offers numerous advantages for small animal imaging, including the ability to monitor the same animals throughout a longitudinal study. However, concerns are often raised regarding the effects of x-ray dose accumulated over the course of the experiment. In this study, we scan C57BL/6 mice multiple times per week for six weeks, to determine the effect of the cumulative dose on pulmonary tissue at the end of the study. Methods/Results: C57BL/6 male mice were split into two groups (irradiated group=10, control group=10). The irradiated group was scanned (80kVp/50mA) each week for 6 weeks; the weekly scan session had three scans. This resulted in a weekly dose of 0.84 Gy, and a total study dose of 5.04 Gy. The control group was scanned on the final week. Scans from weeks 1 and 6 were reconstructed and analyzed: overall, there was no significant difference in lung volume or lung density between the control group and the irradiated group. Similarly, there were no significant differences between the week 1 and week 6 scans in the irradiated group. Histological samples taken from excised lung tissue also showed no evidence of inflammation or fibrosis in the irradiated group. Conclusion: This study demonstrates that a 5 Gy x-ray dose accumulated over six weeks during a longitudinal micro-CT study has no significant effects on the pulmonary tissue of C57BL/6 mice. As a result, the many advantages of micro- CT imaging, including rapid acquisition of high-resolution, isotropic images in free-breathing mice, can be taken advantage of in longitudinal studies without concern for negative dose-related effects.

  14. Investigation of the effect of tube voltage and imaging geometry on phase contrast imaging for a micro-CT system

    NASA Astrophysics Data System (ADS)

    Gui, Jianbao; Zou, Jing; Rong, Junyan; Hu, Zhanli; Zhang, Qiyang; Zheng, Hairong; Xia, Dan

    2012-03-01

    Based upon a bench-top micro-CT system, propagation-based phase-contrast imaging has been investigated using insects and a thin plastic sheet. The system mainly includes a micro-focus source with focal spot size of 13-20 μm and a cooled X-ray CCD detector with pixel size of 24 μm. The edge-enhancement effect can be found clearly in the acquired images. With a 0.5 mm thickness plastic edge phantom, the effects of X-ray tube voltage and imaging geometry on the phase-contrast imaging were investigated, and quantitative index, edge-enhancement index (EEI), were also calculated. In our study, an interesting phenomenon was observed that the phase-contrast effect becomes more pronounced as the tube voltage increases from 20 kVp to 90 kVp. Further investigation indicates that smaller focal spot size resulting from the reduction of tube current at higher tube voltage, has caused the unexpected phenomenon. Inferred from our results, phase-contrast effect is insensitive to the tube voltage in the range of 20-90 kVp (widely used in medical diagnosis); however, it is sensitive to the focal spot size. In addition, for the investigation of the effect of imaging geometry, an optimal geometric magnification range of 2.5-4.5 is suggested to get a good phase-contrast imaging for a micro-CT system with source-to-detector distance of 720 mm.

  15. Three dimensional measurement of micro-optical components using digital holography and pattern recognition

    NASA Astrophysics Data System (ADS)

    Kim, Do-Hyung; Jeon, Sungbin; Cho, Janghyun; Lim, Geon; Park, No-Cheol; Park, Young-Pil

    2015-09-01

    This paper proposes a method for inspecting transparent micro-optical components that combines digital holography and pattern recognition. As many micro-optical components have array structures with numerous elements, the uniformity of each element is important. Consequently, an effective inspection requires simultaneous measurement of these elements. Pattern recognition is used to solve this issue and can be adopted effectively using the unique characteristics of digital holography to obtain both amplitude and phase information on the object. To verify this approach, an experimental demonstration was performed with a micro-lens array using a circle-detection algorithm based on the Hough Transform. As an experimental results 30 micro-lenses are detected and measured simultaneously by using proposed inspection method.

  16. Development of dielectric elastomer driven micro-optical zoom lens system

    NASA Astrophysics Data System (ADS)

    Kim, Hyunseok; Park, Jongkil; Chuc, Nguyen Huu; Choi, H. R.; Nam, J. D.; Lee, Y.; Jung, H. S.; Koo, J. C.

    2007-04-01

    Normally, various micro-scale devices adopt electromechanical actuators for their basic mechanical functions. Those types of actuators require a complicated power transfer system even for generating a tiny scale motion. Since the mechanical power transfer system for the micro-scale motion may require many components, the system design to fit those components into a small space is always challenging. Micro-optical zoom lens systems are recently popularly used for many portable IT devices such as digital cameras, camcorder, and cell phones, Noting the advantages of EAP actuators over the conventional electromechanical counterparts in terms of simple actuator mechanisms, a micro-optic device that is driven with the EAP actuator is introduced in the present work. EAP material selection, device design and fabrication will be also delineated.

  17. The effect of spatial micro-CT image resolution and surface complexity on the morphological 3D analysis of open porous structures

    SciTech Connect

    Pyka, Grzegorz; Kerckhofs, Greet

    2014-01-15

    In material science microfocus X-ray computed tomography (micro-CT) is one of the most popular non-destructive techniques to visualise and quantify the internal structure of materials in 3D. Despite constant system improvements, state-of-the-art micro-CT images can still hold several artefacts typical for X-ray CT imaging that hinder further image-based processing, structural and quantitative analysis. For example spatial resolution is crucial for an appropriate characterisation as the voxel size essentially influences the partial volume effect. However, defining the adequate image resolution is not a trivial aspect and understanding the correlation between scan parameters like voxel size and the structural properties is crucial for comprehensive material characterisation using micro-CT. Therefore, the objective of this study was to evaluate the influence of the spatial image resolution on the micro-CT based morphological analysis of three-dimensional (3D) open porous structures with a high surface complexity. In particular the correlation between the local surface properties and the accuracy of the micro-CT-based macro-morphology of 3D open porous Ti6Al4V structures produced by selective laser melting (SLM) was targeted and revealed for rough surfaces a strong dependence of the resulting structure characteristics on the scan resolution. Reducing the surface complexity by chemical etching decreased the sensitivity of the overall morphological analysis to the spatial image resolution and increased the detection limit. This study showed that scan settings and image processing parameters need to be customized to the material properties, morphological parameters under investigation and the desired final characteristics (in relation to the intended functional use). Customization of the scan resolution can increase the reliability of the micro-CT based analysis and at the same time reduce its operating costs. - Highlights: • We examine influence of the image resolution

  18. Volume shrinkage of bone, brain and muscle tissue in sample preparation for micro-CT and light sheet fluorescence microscopy (LSFM).

    PubMed

    Buytaert, Jan; Goyens, Jana; De Greef, Daniel; Aerts, Peter; Dirckx, Joris

    2014-08-01

    Two methods are especially suited for tomographic imaging with histological detail of macroscopic samples that consist of multiple tissue types (bone, muscle, nerve or fat): Light sheet (based) fluorescence microscopy (LSFM) and micro-computed tomography (micro-CT). Micro-CT requires staining with heavy chemical elements (and thus fixation and sometimes dehydration) in order to make soft tissue imageable when measured alongside denser structures. LSMF requires fixation, decalcification, dehydration, clearing and staining with a fluorescent dye. The specimen preparation of both imaging methods is prone to shrinkage, which is often not mentioned, let alone quantified. In this paper the presence and degree of shrinkage are quantitatively identified for the selected preparation methods/stains. LSFM delivers a volume shrinkage of 17% for bone, 56% for muscle and 62% for brain tissue. The three most popular micro-CT stains (phosphotungstic acid, iodine with potassium iodide, and iodine in absolute ethanol) deliver a volume shrinkage ranging from 10 to 56% for muscle and 27-66% for brain, while bone does not shrink in micro-CT preparation. PMID:24963987

  19. Longitudinal in vivo evaluation of bone regeneration by combined measurement of multi-pinhole SPECT and micro-CT for tissue engineering

    NASA Astrophysics Data System (ADS)

    Lienemann, Philipp S.; Metzger, Stéphanie; Kiveliö, Anna-Sofia; Blanc, Alain; Papageorgiou, Panagiota; Astolfo, Alberto; Pinzer, Bernd R.; Cinelli, Paolo; Weber, Franz E.; Schibli, Roger; Béhé, Martin; Ehrbar, Martin

    2015-05-01

    Over the last decades, great strides were made in the development of novel implants for the treatment of bone defects. The increasing versatility and complexity of these implant designs request for concurrent advances in means to assess in vivo the course of induced bone formation in preclinical models. Since its discovery, micro-computed tomography (micro-CT) has excelled as powerful high-resolution technique for non-invasive assessment of newly formed bone tissue. However, micro-CT fails to provide spatiotemporal information on biological processes ongoing during bone regeneration. Conversely, due to the versatile applicability and cost-effectiveness, single photon emission computed tomography (SPECT) would be an ideal technique for assessing such biological processes with high sensitivity and for nuclear imaging comparably high resolution (<1 mm). Herein, we employ modular designed poly(ethylene glycol)-based hydrogels that release bone morphogenetic protein to guide the healing of critical sized calvarial bone defects. By combined in vivo longitudinal multi-pinhole SPECT and micro-CT evaluations we determine the spatiotemporal course of bone formation and remodeling within this synthetic hydrogel implant. End point evaluations by high resolution micro-CT and histological evaluation confirm the value of this approach to follow and optimize bone-inducing biomaterials.

  20. Optical-CT 3D Dosimetry Using Fresnel Lenses with Minimal Refractive-Index Matching Fluid.

    PubMed

    Bache, Steven; Malcolm, Javian; Adamovics, John; Oldham, Mark

    2016-01-01

    Telecentric optical computed tomography (optical-CT) is a state-of-the-art method for visualizing and quantifying 3-dimensional dose distributions in radiochromic dosimeters. In this work a prototype telecentric system (DFOS-Duke Fresnel Optical-CT Scanner) is evaluated which incorporates two substantial design changes: the use of Fresnel lenses (reducing lens costs from $10-30K t0 $1-3K) and the use of a 'solid tank' (which reduces noise, and the volume of refractively matched fluid from 1 ltr to 10 cc). The efficacy of DFOS was evaluated by direct comparison against commissioned scanners in our lab. Measured dose distributions from all systems were compared against the predicted dose distributions from a commissioned treatment planning system (TPS). Three treatment plans were investigated including a simple four-field box treatment, a multiple small field delivery, and a complex IMRT treatment. Dosimeters were imaged within 2 h post irradiation, using consistent scanning techniques (360 projections acquired at 1 degree intervals, reconstruction at 2mm). DFOS efficacy was evaluated through inspection of dose line-profiles, and 2D and 3D dose and gamma maps. DFOS/TPS gamma pass rates with 3%/3mm dose difference/distance-to-agreement criteria ranged from 89.3% to 92.2%, compared to from 95.6% to 99.0% obtained with the commissioned system. The 3D gamma pass rate between the commissioned system and DFOS was 98.2%. The typical noise rates in DFOS reconstructions were up to 3%, compared to under 2% for the commissioned system. In conclusion, while the introduction of a solid tank proved advantageous with regards to cost and convenience, further work is required to improve the image quality and dose reconstruction accuracy of the new DFOS optical-CT system. PMID:27019460

  1. Optical-CT 3D Dosimetry Using Fresnel Lenses with Minimal Refractive-Index Matching Fluid

    PubMed Central

    Bache, Steven; Malcolm, Javian; Adamovics, John; Oldham, Mark

    2016-01-01

    Telecentric optical computed tomography (optical-CT) is a state-of-the-art method for visualizing and quantifying 3-dimensional dose distributions in radiochromic dosimeters. In this work a prototype telecentric system (DFOS—Duke Fresnel Optical-CT Scanner) is evaluated which incorporates two substantial design changes: the use of Fresnel lenses (reducing lens costs from $10-30K t0 $1-3K) and the use of a ‘solid tank’ (which reduces noise, and the volume of refractively matched fluid from 1ltr to 10cc). The efficacy of DFOS was evaluated by direct comparison against commissioned scanners in our lab. Measured dose distributions from all systems were compared against the predicted dose distributions from a commissioned treatment planning system (TPS). Three treatment plans were investigated including a simple four-field box treatment, a multiple small field delivery, and a complex IMRT treatment. Dosimeters were imaged within 2h post irradiation, using consistent scanning techniques (360 projections acquired at 1 degree intervals, reconstruction at 2mm). DFOS efficacy was evaluated through inspection of dose line-profiles, and 2D and 3D dose and gamma maps. DFOS/TPS gamma pass rates with 3%/3mm dose difference/distance-to-agreement criteria ranged from 89.3% to 92.2%, compared to from 95.6% to 99.0% obtained with the commissioned system. The 3D gamma pass rate between the commissioned system and DFOS was 98.2%. The typical noise rates in DFOS reconstructions were up to 3%, compared to under 2% for the commissioned system. In conclusion, while the introduction of a solid tank proved advantageous with regards to cost and convenience, further work is required to improve the image quality and dose reconstruction accuracy of the new DFOS optical-CT system. PMID:27019460

  2. High Bandwidth Optical Links for Micro-Satellite Support

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin (Inventor); Wilson, Keith E. (Inventor); Coste, Keith (Inventor)

    2016-01-01

    A method, systems, apparatus and device enable high bandwidth satellite communications. An onboard tracking detector, installed in a low-earth orbit satellite, detects a position of an incoming optical beam received/transmitted from a first ground station of one or more ground stations. Tracker electronics determine orientation information of the incoming optical beam based on the position. Control electronics receive the orientation information from the tracker electronics, and control a waveguide drive electronics. The waveguide drive electronics control a voltage that is provided to an electro-optic waveguide beam steering device. The electro-optic waveguide beam steering device steers an outgoing optical beam to one of the one or more ground stations based on the voltage.

  3. Optical sectioning microscopes with no moving parts using a micro-stripe array light emitting diode.

    PubMed

    Poher, V; Zhang, H X; Kennedy, G T; Griffin, C; Oddos, S; Gu, E; Elson, D S; Girkin, M; French, P M W; Dawson, M D; Neil, M A

    2007-09-01

    We describe an optical sectioning microscopy system with no moving parts based on a micro-structured stripe-array light emitting diode (LED). By projecting arbitrary line or grid patterns onto the object, we are able to implement a variety of optical sectioning microscopy techniques such as grid-projection structured illumination and line scanning confocal microscopy, switching from one imaging technique to another without modifying the microscope setup. The micro-structured LED and driver are detailed and depth discrimination capabilities are measured and calculated. PMID:19547474

  4. Polymeric optical fiber tweezers as a tool for single cell micro manipulation and sensing

    NASA Astrophysics Data System (ADS)

    Rodrigues Ribeiro, R. S.; Soppera, O.; Guerreiro, A.; Jorge, P. A...

    2015-09-01

    In this paper a new type of polymeric fiber optic tweezers for single cell manipulation is reported. The optical trapping of a yeast cell using a polymeric micro lens fabricated by guided photo polymerization at the fiber tip is demonstrated. The 2D trapping of the yeast cells is analyzed and maximum optical forces on the pN range are calculated. The experimental results are supported by computational simulations using a FDTD method. Moreover, new insights on the potential for simultaneous sensing and optical trapping, are presented.

  5. A flat-field correction method for photon-counting-detector-based micro-CT

    NASA Astrophysics Data System (ADS)

    Park, So E.; Kim, Jae G.; Hegazy, M. A. A.; Cho, Min H.; Lee, Soo Y.

    2014-03-01

    As low-dose computed tomography becomes a hot issue in the field of clinical x-ray imaging, photon counting detectors have drawn great attention as alternative x-ray image sensors. Even though photon-counting image sensors have several advantages over the integration-type sensors, such as low noise and high DQE, they are known to be more sensitive to the various experimental conditions like temperature and electric drift. Particularly, time-varying detector response during the CT scan is troublesome in photon-counting-detector-based CTs. To overcome the time-varying behavior of the image sensor during the CT scan, we developed a flat-field correction method together with an automated scanning mechanism. We acquired the flat-field images and projection data every view alternatively. When we took the flat-field image, we moved down the imaging sample away from the field-of-view with aid of computer controlled linear positioning stage. Then, we corrected the flat-field effects view-by-view with the flat-field image taken at given view. With a CdTe photon-counting image sensor (XRI-UNO, IMATEK), we took CT images of small bugs. The CT images reconstructed with the proposed flat-field correction method were much superior to the ones reconstructed with the conventional flat-field correction method.

  6. Radiation dose to radiosensitive organs in PET/CT myocardial perfusion examination using versatile optical fibre

    NASA Astrophysics Data System (ADS)

    Salasiah, M.; Nordin, A. J.; Fathinul Fikri, A. S.; Hishar, H.; Tamchek, N.; Taiman, K.; Ahmad Bazli, A. K.; Abdul-Rashid, H. A.; Mahdiraji, G. A.; Mizanur, R.; Noor, Noramaliza M.

    2013-05-01

    Cardiac positron emission tomography (PET) provides a precise method in order to diagnose obstructive coronary artery disease (CAD), compared to single photon emission tomography (SPECT). PET is suitable for obese and patients who underwent pharmacologic stress procedures. It has the ability to evaluate multivessel coronary artery disease by recording changes in left ventricular function from rest to peak stress and quantifying myocardial perfusion (in mL/min/g of tissue). However, the radiation dose to the radiosensitive organs has become crucial issues in the Positron Emission Tomography/Computed Tomography(PET/CT) scanning procedure. The objective of this study was to estimate radiation dose to radiosensitive organs of patients who underwent PET/CT myocardial perfusion examination at Centre for Diagnostic Nuclear Imaging, Universiti Putra Malaysia in one month period using versatile optical fibres (Ge-B-doped Flat Fibre) and LiF (TLD-100 chips). All stress and rest paired myocardial perfusion PET/CT scans will be performed with the use of Rubidium-82 (82Rb). The optic fibres were loaded into plastic capsules and attached to patient's eyes, thyroid and breasts prior to the infusion of 82Rb, to accommodate the ten cases for the rest and stress PET scans. The results were compared with established thermoluminescence material, TLD-100 chips. The result shows that radiation dose given by TLD-100 and Germanium-Boron-doped Flat Fiber (Ge-B-doped Flat Fiber) for these five organs were comparable to each other where the p>0.05. For CT scans,thyroid received the highest dose compared to other organs. Meanwhile, for PET scans, breasts received the highest dose.

  7. Three dimensional imaging of porosity and tracer concentration distributions in a dolostone sample during diffusion experiments using X-ray micro-CT.

    PubMed

    Agbogun, H M D; Al, Tom A; Hussein, Esam M A

    2013-02-01

    X-ray micro-computed tomography (micro-CT) techniques for measuring the three-dimensional (3-D) distributions of diffusion-accessible porosity (φ(d)) and temporal tracer-concentrations (C(t)) within a dolostone sample subjected to solute diffusion are developed and tested in this work. The φ(d) and C(t) measurements are based on spatially resolved changes in X-ray attenuation coefficients in sequentially acquired 3-D micro-CT datasets using two (calibration and relative) analytical approaches. The measured changes in X-ray attenuation coefficient values are a function of the mass of X-ray absorbing potassium-iodide tracer present in voxels. Mean φ(d) values of 3.8% and 6.5% were obtained with the calibration and the relative approaches, respectively. The detection limits for φ(d) measurements at individual voxel locations are 20% and 36% with the calibration and the relative methods, respectively. The detection limit for C(t) are 0.12 M and 0.22 M with the calibration and the relative approaches, respectively. Results from the calibration method are affected by a beam-hardening artifact and although results from the relative approach are not affected by the artifact, they are subject to high detection limits. This work presents a quantitative assessment of micro-CT data for studies of solute transport. Despite limitations in precision and accuracy, the method provides quantitative 3-D distributions of φ(d) and C(t) that reflect solute diffusion in heterogeneous porous geologic media. PMID:23298531

  8. Three dimensional imaging of porosity and tracer concentration distributions in a dolostone sample during diffusion experiments using X-ray micro-CT

    NASA Astrophysics Data System (ADS)

    Agbogun, H. M. D.; Al, Tom A.; Hussein, Esam M. A.

    2013-02-01

    X-ray micro-computed tomography (micro-CT) techniques for measuring the three-dimensional (3-D) distributions of diffusion-accessible porosity (φd) and temporal tracer-concentrations (C(t)) within a dolostone sample subjected to solute diffusion are developed and tested in this work. The φd and C(t) measurements are based on spatially resolved changes in X-ray attenuation coefficients in sequentially acquired 3-D micro-CT datasets using two (calibration and relative) analytical approaches. The measured changes in X-ray attenuation coefficient values are a function of the mass of X-ray absorbing potassium-iodide tracer present in voxels. Mean φd values of 3.8% and 6.5% were obtained with the calibration and the relative approaches, respectively. The detection limits for φd measurements at individual voxel locations are 20% and 36% with the calibration and the relative methods, respectively. The detection limit for C(t) are 0.12 M and 0.22 M with the calibration and the relative approaches, respectively. Results from the calibration method are affected by a beam-hardening artifact and although results from the relative approach are not affected by the artifact, they are subject to high detection limits. This work presents a quantitative assessment of micro-CT data for studies of solute transport. Despite limitations in precision and accuracy, the method provides quantitative 3-D distributions of φd and C(t) that reflect solute diffusion in heterogeneous porous geologic media.

  9. SU-E-I-84: Accuracy Comparison of Multi-Modality Image-Based Volumes of Rodent Solid Tumors Using In-Air Micro-CT Image Volume

    SciTech Connect

    Lee, Y; Fullerton, G; Goins, B

    2015-06-15

    Purpose: Tumor volume is considered as a better predictor for therapy response monitoring and tumor staging over Response Evaluation Criteria In Solid Tumors (RECIST) or World Health Organization (WHO) criteria. In this study, the accuracy of subcutaneous rodent tumor volumes using preclinical magnetic resonance imaging (MRI), micro-computed tomography (micro-CT) and ultrasound (US) equipment and with an external caliper was compared using in-air micro-CT image volume of excised tumors determined as reference tumor volume in our prior study. Methods: MR, US and micro-CT images of subcutaneous SCC4 head and neck tumor xenografts were acquired 4, 6, 9, 11 and 13 days after tumor cell inoculation. Before MR and US scans, caliper measurements were made. After tumors were excised, in-air micro-CT imaging and ex vivo caliper measurements were performed. Tumor volumes were calculated using formula V = (π/6)*a*b*c where a, b and c are the maximum diameters in three perpendicular dimensions determined by the three image modalities and caliper, and compared with reference tumor volume by linear regression analysis as well as Bland-Altman plots. A one-way Analysis of Variance (ANOVA) test was also performed to compare volumes among caliper measurements. Results: The correlation coefficients (R2) of the regression lines for tumor volumes measured by the three imaging modalities and caliper were 0.9939, 0.9669, 0.9806, 0.9274, 0.9619 and 0.9819 for MRI, US and micro-CT, caliperbeforeMRI, caliperbeforeUS and ex vivo caliper respectively. In Bland-Altman plots, the average of tumor volume difference from reference tumor volume (bias) was significant for caliper and micro- CT, but not for MRI and US. Comparison of caliper measurements showed a significant difference (p < 0.05). Conclusion: Using the in-air micro-CT image volume, tumor volume measured by MRI was the most accurate among the three imaging modalities. In vivo caliper volume measurements showed unreliability while ex

  10. Sensitivity calibration procedures in optical-CT scanning of BANG 3 polymer gel dosimeters.

    PubMed

    Xu, Y; Wuu, Cheng-Shie; Maryanski, Marek J

    2010-02-01

    The dose response of the BANG 3 polymer gel dosimeter (MGS Research Inc., Madison, CT) was studied using the OCTOPUS laser CT scanner (MGS Research Inc., Madison, CT). Six 17 cm diameter and 12 cm high Barex cylinders, and 18 small glass vials were used to house the gel. The gel phantoms were irradiated with 6 and 10 MV photons, as well as 12 and 16 MeV electrons using a Varian Clinac 2100EX. Three calibration methods were used to obtain the dose response curves: (a) Optical density measurements on the 18 glass vials irradiated with graded doses from 0 to 4 Gy using 6 or 10 MV large field irradiations; (b) optical-CT scanning of Barex cylinders irradiated with graded doses (0.5, 1, 1.5, and 2 Gy) from four adjacent 4 x 4 cm2 photon fields or 6 x 6 cm2 electron fields; and (c) percent depth dose (PDD) comparison of optical-CT scans with ion chamber measurements for 6 x 6 cm2, 12 and 16 MeV electron fields. The dose response of the BANG3 gel was found to be linear and energy independent within the uncertainties of the experimental methods (about 3%). The slopes of the linearly fitted dose response curves (dose sensitivities) from the four field irradiations (0.0752 +/- 3%, 0.0756 +/- 3%, 0.0767 +/- 3%, and 0.0759 +/- 3% cm(-1) Gy(-1)) and the PDD matching methods (0.0768 +/- 3% and 0.0761 +/- 3% cm(-1) Gy(-1)) agree within 2.2%, indicating a good reproducibility of the gel dose response within phantoms of the same geometry. The dose sensitivities from the glass vial approach are different from those of the cylindrical Barex phantoms by more than 30%, owing probably to the difference in temperature inside the two types of phantoms during gel formation and irradiation, and possible oxygen contamination of the glass vial walls. The dose response curve obtained from the PDD matching approach with 16 MeV electron field was used to calibrate the gel phantom irradiated with the 12 MeV, 6 x 6 cm2 electron field. Three-dimensional dose distributions from the gel measurement

  11. Three-dimensional dosimetry of small megavoltage radiation fields using radiochromic gels and optical CT scanning

    NASA Astrophysics Data System (ADS)

    Babic, Steven; McNiven, Andrea; Battista, Jerry; Jordan, Kevin

    2009-04-01

    The dosimetry of small fields as used in stereotactic radiotherapy, radiosurgery and intensity-modulated radiation therapy can be challenging and inaccurate due to partial volume averaging effects and possible disruption of charged particle equilibrium. Consequently, there exists a need for an integrating, tissue equivalent dosimeter with high spatial resolution to avoid perturbing the radiation beam and artificially broadening the measured beam penumbra. In this work, radiochromic ferrous xylenol-orange (FX) and leuco crystal violet (LCV) micelle gels were used to measure relative dose factors (RDFs), percent depth dose profiles and relative lateral beam profiles of 6 MV x-ray pencil beams of diameter 28.1, 9.8 and 4.9 mm. The pencil beams were produced via stereotactic collimators mounted on a Varian 2100 EX linear accelerator. The gels were read using optical computed tomography (CT). Data sets were compared quantitatively with dosimetric measurements made with radiographic (Kodak EDR2) and radiochromic (GAFChromic® EBT) film, respectively. Using a fast cone-beam optical CT scanner (Vista™), corrections for diffusion in the FX gel data yielded RDFs that were comparable to those obtained by minimally diffusing LCV gels. Considering EBT film-measured RDF data as reference, cone-beam CT-scanned LCV gel data, corrected for scattered stray light, were found to be in agreement within 0.5% and -0.6% for the 9.8 and 4.9 mm diameter fields, respectively. The validity of the scattered stray light correction was confirmed by general agreement with RDF data obtained from the same LCV gel read out with a laser CT scanner that is less prone to the acceptance of scattered stray light. Percent depth dose profiles and lateral beam profiles were found to agree within experimental error for the FX gel (corrected for diffusion), LCV gel (corrected for scattered stray light), and EBT and EDR2 films. The results from this study reveal that a three-dimensional dosimetry method

  12. Radiation-induced refraction artifacts in the optical CT readout of polymer gel dosimeters

    SciTech Connect

    Campbell, Warren G.; Jirasek, Andrew; Wells, Derek M.

    2014-11-01

    Purpose: The objective of this work is to demonstrate imaging artifacts that can occur during the optical computed tomography (CT) scanning of polymer gel dosimeters due to radiation-induced refractive index (RI) changes in polyacrylamide gels. Methods: A 1 L cylindrical polyacrylamide gel dosimeter was irradiated with 3 × 3 cm{sup 2} square beams of 6 MV photons. A prototype fan-beam optical CT scanner was used to image the dosimeter. Investigative optical CT scans were performed to examine two types of rayline bending: (i) bending within the plane of the fan-beam and (ii) bending out the plane of the fan-beam. To address structured errors, an iterative Savitzky–Golay (ISG) filtering routine was designed to filter 2D projections in sinogram space. For comparison, 2D projections were alternatively filtered using an adaptive-mean (AM) filter. Results: In-plane rayline bending was most notably observed in optical CT projections where rays of the fan-beam confronted a sustained dose gradient that was perpendicular to their trajectory but within the fan-beam plane. These errors caused distinct streaking artifacts in image reconstructions due to the refraction of higher intensity rays toward more opaque regions of the dosimeter. Out-of-plane rayline bending was observed in slices of the dosimeter that featured dose gradients perpendicular to the plane of the fan-beam. These errors caused widespread, severe overestimations of dose in image reconstructions due to the higher-than-actual opacity that is perceived by the scanner when light is bent off of the detector array. The ISG filtering routine outperformed AM filtering for both in-plane and out-of-plane rayline errors caused by radiation-induced RI changes. For in-plane rayline errors, streaks in an irradiated region (>7 Gy) were as high as 49% for unfiltered data, 14% for AM, and 6% for ISG. For out-of-plane rayline errors, overestimations of dose in a low-dose region (∼50 cGy) were as high as 13 Gy for

  13. Micro-Ball-Lens Optical Switch Driven by SMA Actuator

    NASA Technical Reports Server (NTRS)

    Yang, Eui-Hyeok

    2003-01-01

    The figure is a simplified cross section of a microscopic optical switch that was partially developed at the time of reporting the information for this article. In a fully developed version, light would be coupled from an input optical fiber to one of two side-by-side output optical fibers. The optical connection between the input and the selected output fiber would be made via a microscopic ball lens. Switching of the optical connection from one output fiber to another would be effected by using a pair of thin-film shape-memory-alloy (SMA) actuators to toggle the lens between two resting switch positions. There are many optical switches some made of macroscopic parts by conventional fabrication techniques and some that are microfabricated and, hence, belong to the class of microelectromechanical systems (MEMS). Conventionally fabricated optical switches tend to be expensive. MEMS switches can be mass-produced at relatively low cost, but their attractiveness has been diminished by the fact that, heretofore, MEMS switches have usually been found to exhibit high insertion losses. The present switch is intended to serve as a prototype of low-loss MEMS switches. In addition, this is the first reported SMA-based optical switch. The optical fibers would be held in V grooves in a silicon frame. The lens would have a diameter of 1 m; it would be held by, and positioned between, the SMA actuators, which would be made of thin films of TiNi alloy. Although the SMA actuators are depicted here as having simple shapes for the sake of clarity of illustration, the real actuators would have complex, partly net-like shapes. With the exception of the lens and the optical fibers, the SMA actuators and other components of the switch would be made by microfabrication techniques. The components would be assembled into a sandwich structure to complete the fabrication of the switch. To effect switching, an electric current would be passed through one of the SMA actuators to heat it above

  14. Optical increase of photo-integrated micro- and nano-periodic susceptibility lattices

    NASA Astrophysics Data System (ADS)

    Smirnov, Vitaly A.; Vostrikova, Liubov I.

    2015-03-01

    It is demonstrated that the nonlinear photo-integrated micro- and nano-periodic second-order susceptibility lattices with very small amplitudes which were preliminarily recorded using bi-chromatic powerful laser light in amorphous glass materials can be increased up to some orders of magnitude under the action of a simple coherent monochromatic radiation. The optical increase of the small lattices takes place independent of the polarization and direction of propagation of the optical amplifying radiation and is achieved at various wavelengths. The observed phenomenon is not be explained only by nonlinear wave interaction in medium and also may be related to the microscopic asymmetry processes of the optical transitions between local centers in an isotropic medium that leads to the appearance and growth of the all-optically induced small micro- and nano-periodic electrical charges separations inside the sample. Possible mechanisms that may be responsible for the observed effects in the studied phosphate glasses are discussed.

  15. Optical-biased modulator employing a single silicon micro-ring resonator

    NASA Astrophysics Data System (ADS)

    Yan, Siqi; Dong, Jianji; Zheng, Aoling; Yu, Yuan

    2016-06-01

    We propose and experimentally demonstrate an optical-biased modulator employing a single silicon micro-ring resonator. By adjusting optical bias, the micro-ring modulator is capable of generating several modulation formats, namely, on-off keying, binary phase shift keying and reversed on-off keying, at the speed of 0.4 Gbit/s with extinction ratio higher than 5 dB. Compared to the previous reported bias control approaches, the optical bias proposed in this study is a novel mechanism, which can be easily conducted without complicated integrated structures or redundant electrical devices. Meanwhile, optical bias can also effectively protect the vulnerable integrated silicon devices from possible damage induced by high direct current voltage.

  16. Modelling capillary trapping using finite-volume simulation of two-phase flow directly on micro-CT images

    NASA Astrophysics Data System (ADS)

    Raeini, Ali Q.; Bijeljic, Branko; Blunt, Martin J.

    2015-09-01

    We study capillary trapping in porous media using direct pore-scale simulation of two-phase flow on micro-CT images of a Berea sandstone and a sandpack. The trapped non-wetting phase saturations are predicted by solving the full Navier-Stokes equations using a volume-of-fluid based finite-volume framework to simulate primary drainage followed by water injection. Using these simulations, we analyse the effects of initial non-wetting-phase saturation, capillary number and flow direction on the residual saturation. The predictions from our numerical method are in agreement with published experimental measurements of capillary trapping curves. This shows that our direct simulation method can be used to elucidate the effect of pore structure and flow pattern of capillary trapping and provides a platform to study the physics of multiphase flow at the pore scale.

  17. Local plate/rod descriptors of 3D trabecular bone micro-CT images from medial axis topologic analysis

    SciTech Connect

    Peyrin, Francoise; Attali, Dominique; Chappard, Christine; Benhamou, Claude Laurent

    2010-08-15

    Purpose: Trabecular bone microarchitecture is made of a complex network of plate and rod structures evolving with age and disease. The purpose of this article is to propose a new 3D local analysis method for the quantitative assessment of parameters related to the geometry of trabecular bone microarchitecture. Methods: The method is based on the topologic classification of the medial axis of the 3D image into branches, rods, and plates. Thanks to the reversibility of the medial axis, the classification is next extended to the whole 3D image. Finally, the percentages of rods and plates as well as their mean thicknesses are calculated. The method was applied both to simulated test images and 3D micro-CT images of human trabecular bone. Results: The classification of simulated phantoms made of plates and rods shows that the maximum error in the quantitative percentages of plate and rods is less than 6% and smaller than with the structure model index (SMI). Micro-CT images of human femoral bone taken in osteoporosis and early or advanced osteoarthritis were analyzed. Despite the large physiological variability, the present method avoids the underestimation of rods observed with other local methods. The relative percentages of rods and plates were not significantly different between osteoarthritis and osteoporotic groups, whereas their absolute percentages were in relation to an increase of rod and plate thicknesses in advanced osteoarthritis with also higher relative and absolute number of nodes. Conclusions: The proposed method is model-independent, robust to surface irregularities, and enables geometrical characterization of not only skeletal structures but entire 3D images. Its application provided more accurate results than the standard SMI on simple simulated phantoms, but the discrepancy observed on the advanced osteoarthritis group raises questions that will require further investigations. The systematic use of such a local method in the characterization of

  18. A Combined Micro-CT Imaging/Microfluidic Approach for Understating Methane Recovery in Coal Seam Gas Reservoirs

    NASA Astrophysics Data System (ADS)

    Mostaghimi, P.; Armstrong, R. T.; Gerami, A.; Lamei Ramandi, H.; Ebrahimi Warkiani, M.

    2015-12-01

    Coal seam methane is a form of natural gas stored in coal beds and is one of the most important unconventional resources of energy. The flow and transport in coal beds occur in a well-developed system of natural fractures that are also known as cleats. We use micro-Computed Tomography (CT) imaging at both dry and wet conditions to resolve the cleats below the resolution of the image. Scanning Electron Microscopy (SEM) is used for calibration of micro-CT data. Using soft lithography technique, the cleat system is duplicated on a silicon mould. We fabricate a microfluidic chip using Polydimethylsiloxane (PDMS) to study both imbibition and drainage in generated coal structures for understating gas and water transport in coal seam reservoirs. First, we use simple patterns observed on coal images to analyse the effects of wettability, cleat size and distribution on flow behaviour. Then, we study transport in a coal by injecting both distilled water and decane with a rate of 1 microliter/ min into the fabricated cleat structure (Figure 1), initially saturated with air. We repeat the experiment for different contact angles by plasma treating the microfluidic chip, and results show significant effects of wettability on the displacement efficiency. The breakthrough time in the imbibition setup is significantly longer than in the drainage. Using rapid video capturing, and high resolution microscopy, we measure the saturation of displacing fluid with respect to time. By measuring gas and liquid recovery in the outlet at different saturation, we predict relative permeability of coal. This work has important applications for optimising gas recovery and our results can serve as a benchmark in the verification of multiphase numerical models used in coal seam gas industry.

  19. Evaluation of the marginal fit of full ceramic crowns by the microcomputed tomography (micro-CT) technique

    PubMed Central

    Demir, Necla; Ozturk, Atiye Nilgun; Malkoc, Meral Arslan

    2014-01-01

    Objective: To evaluate the marginal gap (MG) and absolute marginal discrepancy (MD) of full ceramic crowns with two finish line designs, shoulder and chamfer, using microcomputed tomography (micro-CT) before and after cementation. Materials and Methods: Sixty extracted human maxillary premolar teeth were divided into two groups based on the finish line design: Group I: 90° shoulder and Group II: 135° chamfer. The specimens were further grouped based on the type of full ceramic crown they received: Group A: Feldspathic Cerec inLab ceramic system, Group B: Cerec inLab aluminum oxide ceramic system and Group C: Lithium disilicate press ceramic system. Before cementation, five crowns from each group were scanned using micro-CT in two sections, sagittal and coronal, to determine the MG and MD values for four regions of the crown (sagittal buccal, sagittal lingual, coronal mesial and coronal distal). After cementation and thermal cycling, the scanning was repeated. Measurements were obtained from 10 points for each region, 80 points totally, to evaluate the MG and MD values. Files were processed using NRecon and CTAn software. Results were statistically analyzed using one- and two-way ANOVA and Tukey HSD tests (P = 0.05). Results: Full ceramic systems showed clinically acceptable marginal adaptation values. The Feldspathic Cerec inLab ceramic system generally presented the lowest variance, except in the MG values of the coronal mesial region. The MG and MD values of all ceramics increased significantly after cementation, except in the shoulder preparation design (sagittal buccal region) for MG and in the chamfer preparation design (sagittal lingual region) for MD values. Conclusions: Full-ceramic crowns showed clinically acceptable marginal adaptation values. The Feldspathic Cerec inLab ceramic system (Vitablocs Mark II) generally presented the lowest variance when compared with the other ceramics, except for the MG values on the mesial surface of the coronal section

  20. A compact low cost cooling stage for lab based x-ray micro-CT setups

    NASA Astrophysics Data System (ADS)

    De Schryver, Thomas; Boone, Marijn A.; De Kock, Tim; Duquenne, Barbara; Christaki, Maria; Masschaele, Bert; Dierick, Manuel; Boone, Matthieu N.; Van Hoorebeke, Luc

    2016-01-01

    A temperature controlled sample stage, which can both heat up, and cool down a sample while it is subjected to a μCT scan has been developed. The stage was designed to reach temperatures up to 50°C and down to -20°C and has been used in several applications with a varying degree of dynamism, going from immobilizing samples by freezing them to studying fully dynamically evolving temperature dependent processes.

  1. Probing DNA with micro- and nanocapillaries and optical tweezers

    NASA Astrophysics Data System (ADS)

    Steinbock, L. J.; Otto, O.; Skarstam, D. R.; Jahn, S.; Chimerel, C.; Gornall, J. L.; Keyser, U. F.

    2010-11-01

    We combine for the first time optical tweezer experiments with the resistive pulse technique based on capillaries. Quartz glass capillaries are pulled into a conical shape with tip diameters as small as 27 nm. Here, we discuss the translocation of λ-phage DNA which is driven by an electrophoretic force through the nanocapillary. The resulting change in ionic current indicates the folding state of single λ-phage DNA molecules. Our flow cell design allows for the straightforward incorporation of optical tweezers. We show that a DNA molecule attached to an optically trapped colloid is pulled into a capillary by electrophoretic forces. The detected electrophoretic force is in good agreement with measurements in solid-state nanopores.

  2. Femtosecond laser fabrication of hybrid micro-optical elements and their integration on the fiber tip

    NASA Astrophysics Data System (ADS)

    Malinauskas, Mangirdas; Gilbergs, Holger; Zukauskas, Albertas; Belazaras, Kastytis; Purlys, Vytautas; Rutkauskas, Marius; Bickauskaite, Gabija; Momot, Andrej; Paipulas, Domas; Gadonas, Roaldas; Juodkazis, Saulius; Piskarskas, Algis

    2010-05-01

    Femtosecond laser photo-polymerization of zirconium-silicon based sol-gel photopolymer SZ2080 is used to fabricate micro-optical elements with a single and hybrid optical functions. We demonstrate photo-polymerization of the solid immersion and Fresnel lenses. Gratings can be added onto the surface of lenses. The effective refractive index of polymerized structures can be controlled via the volume fraction of polymer. We used woodpile structure with volume fraction of 0.65-0.8. Tailoring of dispersion properties of micro-optical elements by changing filling ratio of polymer are discussed. Direct write approach is used to form such structures on a cover glass and on the tip of an optical fiber. Close matching of refractive indices between the polymer and substrate in visible and near infra red spectral regions (nSZ2080 = 1.504, nglass = 1.52) is favorable for such integration. The surface roughness of laser-polymerized resits was ~30 nm (min-max value), which is acceptable for optical applications in the visible range. For the bulk micro-optical elements the efficiency of 3D laser polymerization is increased by a factor ~ (2 - 4) × 102 times (depends on the design) by the shell-formation polymerization: (i) contour scanning for definition of shell-surface, (ii) development for removal of nonfunctional resist, and (iii) UV exposure for the final volumetric polymerization of an enclosed volume.

  3. Application of high resolution synchrotron micro-CT radiation in dental implant osseointegration.

    PubMed

    Neldam, Camilla Albeck; Lauridsen, Torsten; Rack, Alexander; Lefolii, Tore Tranberg; Jørgensen, Niklas Rye; Feidenhans'l, Robert; Pinholt, Else Marie

    2015-06-01

    The purpose of this study was to describe a refined method using high-resolution synchrotron radiation microtomography (SRmicro-CT) to evaluate osseointegration and peri-implant bone volume fraction after titanium dental implant insertion. SRmicro-CT is considered gold standard evaluating bone microarchitecture. Its high resolution, high contrast, and excellent high signal-to-noise-ratio all contribute to the highest spatial resolutions achievable today. Using SRmicro-CT at a voxel size of 5 μm in an experimental goat mandible model, the peri-implant bone volume fraction was found to quickly increase to 50% as the radial distance from the implant surface increased, and levelled out to approximately 80% at a distance of 400 μm. This method has been successful in depicting the bone and cavities in three dimensions thereby enabling us to give a more precise answer to the fraction of the bone-to-implant contact compared to previous methods. PMID:25957106

  4. Micro-CT study of the anatomy of the Leafhopper Homalodisca vitripennis (Hemiptera: Cicadellidae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A Digital Anatomy Library, DAL, was produced to the anatomy of the glassy-winged sharpshooter adult, Homalodisca vitripennis (Hemiptera: Cicadellidae), vector of bacteria which cause Pierce’s disease of grapevines. The insect anatomy was elucidated using a high resolution Bruker Skyscan 1172 micro t...

  5. X-ray micro-CT used for the localization of water repellents and consolidants inside natural building stones

    SciTech Connect

    Cnudde, V. . E-mail: veerle.cnudde@Ugent.be; Cnudde, J.P.; Dupuis, C.; Jacobs, P.J.S.

    2004-11-15

    Natural stones used in monuments have to deal sooner or later with weathering. The desire to preserve cultural heritage created a wide variety of products to reduce the rate of stone decay and to strengthen decayed stone. The ability of these water repellents and consolidants to penetrate inside natural building stones is one of the main factors controlling their performance. The determination of this penetration depth is crucial for the application of conservation products. Because the impregnation depth also depends on the characteristics of the material itself, such as total porosity and pore size distribution, these should be considered when restoration is planned. X-ray micro-computed tomography ({mu}CT) was used to determine the impregnation depth of water repellents and consolidants. 3D information about the total porosity and the pore size distribution was obtained with the combination of {mu}CT and home-made 3D software. This experiment should provide a basic step for extra advice on the suitability of products for the treatment of a particular rock type.

  6. Impact of micronutrients supplementation on bone repair around implants: microCT and counter-torque analysis in rats

    PubMed Central

    Pimentel, Suzana Peres; Casarin, Renato Correa; Ribeiro, Fernanda Vieira; Cirano, Fabiano Ribeiro; Rovaris, Karla; Haiter, Francisco; Casati, Marcio Zaffalon

    2016-01-01

    ABSTRACT The use of natural substances and micronutritional approaches has been suggested as a therapeutic alternative to benefit the bone healing associated with no side effects. Nevertheless, the influence of micronutritional interventions with therapeutic proprieties on the bone repair has yet to be intensely evaluated, and no evidence is available exploring the impact of micronutrient supplementation on the peri-implant bone healing. Objective This study investigated the effect of micronutrients supplementation on the bone repair around implants. Material and Methods One screw-shaped titanium implant was inserted in each tibia of each rat, which were assigned to: daily administration, for 30 d, of the placebo solution (Placebo group-n:18) or micronutrients supplementation (Micronutrients group-n:18), based on calcium, magnesium, zinc, and vitamin D3 intake. After, the animals were sacrificed. One of the implants was removed by applying a counter-torque force to evaluate the force to rupture the bone-implant interface. The other implant was evaluated by microcomputed tomography (CT) examination to determine the bone-to-implant contact (BIC) and the bone volume (BV/TV). Results No statistically significant differences were observed between the groups for both counter-torque values and microCT parameters (p>0.05). Conclusion Within the limits of this study, micronutrients supplementation did not provide additional benefits to the bone healing around dental implants. PMID:27008256

  7. Impact of micronutrients supplementation on bone repair around implants: microCT and counter-torque analysis in rats.

    PubMed

    Pimentel, Suzana Peres; Casarin, Renato Correa; Ribeiro, Fernanda Vieira; Cirano, Fabiano Ribeiro; Rovaris, Karla; Haiter Neto, Francisco; Casati, Marcio Zaffalon

    2016-02-01

    The use of natural substances and micronutritional approaches has been suggested as a therapeutic alternative to benefit the bone healing associated with no side effects. Nevertheless, the influence of micronutritional interventions with therapeutic proprieties on the bone repair has yet to be intensely evaluated, and no evidence is available exploring the impact of micronutrient supplementation on the peri-implant bone healing. Objective This study investigated the effect of micronutrients supplementation on the bone repair around implants. Material and Methods One screw-shaped titanium implant was inserted in each tibia of each rat, which were assigned to: daily administration, for 30 d, of the placebo solution (Placebo group-n:18) or micronutrients supplementation (Micronutrients group-n:18), based on calcium, magnesium, zinc, and vitamin D3 intake. After, the animals were sacrificed. One of the implants was removed by applying a counter-torque force to evaluate the force to rupture the bone-implant interface. The other implant was evaluated by microcomputed tomography (CT) examination to determine the bone-to-implant contact (BIC) and the bone volume (BV/TV). Results No statistically significant differences were observed between the groups for both counter-torque values and microCT parameters (p>0.05). Conclusion Within the limits of this study, micronutrients supplementation did not provide additional benefits to the bone healing around dental implants. PMID:27008256

  8. Analysis of image sharpness reproducibility on a novel engineered micro-CT scanner with variable geometry and embedded recalibration software.

    PubMed

    Panetta, D; Belcari, N; Del Guerra, A; Bartolomei, A; Salvadori, P A

    2012-04-01

    This study investigates the reproducibility of the reconstructed image sharpness, after modifications of the geometry setup, for a variable magnification micro-CTCT) scanner. All the measurements were performed on a novel engineered μCT scanner for in vivo imaging of small animals (Xalt), which has been recently built at the Institute of Clinical Physiology of the National Research Council (IFC-CNR, Pisa, Italy), in partnership with the University of Pisa. The Xalt scanner is equipped with an integrated software for on-line geometric recalibration, which will be used throughout the experiments. In order to evaluate the losses of image quality due to modifications of the geometry setup, we have made 22 consecutive acquisitions by changing alternatively the system geometry between two different setups (Large FoV - LF, and High Resolution - HR). For each acquisition, the tomographic images have been reconstructed before and after the on-line geometric recalibration. For each reconstruction, the image sharpness was evaluated using two different figures of merit: (i) the percentage contrast on a small bar pattern of fixed frequency (f = 5.5 lp/mm for the LF setup and f = 10 lp/mm for the HR setup) and (ii) the image entropy. We have found that, due to the small-scale mechanical uncertainty (in the order of the voxel size), a recalibration is necessary for each geometric setup after repositioning of the system's components; the resolution losses due to the lack of recalibration are worse for the HR setup (voxel size = 18.4 μm). The integrated on-line recalibration algorithm of the Xalt scanner allowed to perform the recalibration quickly, by restoring the spatial resolution of the system to the reference resolution obtained after the initial (off-line) calibration. PMID:21501966

  9. Evaluation of Avulsion-Induced Neuropathology in Rat Spinal Cords with 18F-FDG Micro-PET/CT.

    PubMed

    Ling, Ze-Min; Tang, Ying; Li, Ying-Qin; Luo, Hao-Xuan; Liu, Lin-Lin; Tu, Qing-Qiang; Zhou, Li-Hua

    2015-01-01

    Brachial plexus root avulsion (BPRA) leads to dramatic motoneuron death and glial reactions in the corresponding spinal segments at the late stage of injury. To protect spinal motoneurons, assessment of the affected spinal segments should be done at an earlier stage of the injury. In this study, we employed 18F-FDG small-animal PET/CT to assess the severity of BPRA-induced cervical spinal cord injuries. Adult Sprague-Dawley rats were randomly treated and divided into three groups: Av+NS (brachial plexus root avulsion (Av) treated with normal saline), Av+GM1 (treated with monosialoganglioside), and control. At time points of 3 day (d), 1 week (w), 2 w, 4 w and 8 w post-injury, 18F-FDG micro-PET/CT scans and neuropathology assessments of the injured spinal roots, as well as the spinal cord, were performed. The outcomes of the different treatments were compared. The results showed that BPRA induced local bleeding and typical Wallerian degeneration of the avulsed roots accompanied by 18F-FDG accumulations at the ipsilateral cervical intervertebral foramen. BPRA-induced astrocyte reactions and overexpression of neuronal nitric oxide synthase in the motoneurons correlated with higher 18F-FDG uptake in the ipsilateral cervical spinal cord during the first 2 w post-injury. The GM1 treatment reduced BPRA-induced astrocyte reactions and inhibited the de novo nNOS expressions in spinal motoneurons. The GM1 treatment also protected spinal motoneurons from avulsion within the first 4 w post-injury. The data from this study suggest that 18F-FDG PET/CT could be used to assess the severity of BPRA-induced primary and secondary injuries in the spinal cord. Furthermore, GM1 is an effective drug for reducing primary and secondary spinal cord injuries following BPRA. PMID:26010770

  10. Reconstruction of muscle fascicle architecture from iodine-enhanced microCT images: A combined texture mapping and streamline approach.

    PubMed

    Kupczik, Kornelius; Stark, Heiko; Mundry, Roger; Neininger, Fabian T; Heidlauf, Thomas; Röhrle, Oliver

    2015-10-01

    Skeletal muscle models are used to investigate motion and force generation in both biological and bioengineering research. Yet, they often lack a realistic representation of the muscle's internal architecture which is primarily composed of muscle fibre bundles, known as fascicles. Recently, it has been shown that fascicles can be resolved with micro-computed tomography (µCT) following staining of the muscle tissue with iodine potassium iodide (I2KI). Here, we present the reconstruction of the fascicular spatial arrangement and geometry of the superficial masseter muscle of a dog based on a combination of pattern recognition and streamline computation. A cadaveric head of a dog was incubated in I2KI and µCT-scanned. Following segmentation of the masseter muscle a statistical pattern recognition algorithm was applied to create a vector field of fascicle directions. Streamlines were then used to transform the vector field into a realistic muscle fascicle representation. The lengths of the reconstructed fascicles and the pennation angles in two planes (frontal and sagittal) were extracted and compared against a tracked fascicle field obtained through cadaver dissection. Both fascicle lengths and angles were found to vary substantially within the muscle confirming the complex and heterogeneous nature of skeletal muscle described by previous studies. While there were significant differences in the pennation angle between the experimentally derived and µCT-reconstructed data, there was congruence in the fascicle lengths. We conclude that the presented approach allows for embedding realistic fascicle information into finite element models of skeletal muscles to better understand the functioning of the musculoskeletal system. PMID:26141643

  11. Evaluation of Avulsion-Induced Neuropathology in Rat Spinal Cords with 18F-FDG Micro-PET/CT

    PubMed Central

    Li, Ying-Qin; Luo, Hao-Xuan; Liu, Lin-Lin; Tu, Qing-Qiang; Zhou, Li-Hua

    2015-01-01

    Brachial plexus root avulsion (BPRA) leads to dramatic motoneuron death and glial reactions in the corresponding spinal segments at the late stage of injury. To protect spinal motoneurons, assessment of the affected spinal segments should be done at an earlier stage of the injury. In this study, we employed 18F-FDG small-animal PET/CT to assess the severity of BPRA-induced cervical spinal cord injuries. Adult Sprague-Dawley rats were randomly treated and divided into three groups: Av+NS (brachial plexus root avulsion (Av) treated with normal saline), Av+GM1 (treated with monosialoganglioside), and control. At time points of 3 day (d), 1 week (w), 2 w, 4 w and 8 w post-injury, 18F-FDG micro-PET/CT scans and neuropathology assessments of the injured spinal roots, as well as the spinal cord, were performed. The outcomes of the different treatments were compared. The results showed that BPRA induced local bleeding and typical Wallerian degeneration of the avulsed roots accompanied by 18F-FDG accumulations at the ipsilateral cervical intervertebral foramen. BPRA-induced astrocyte reactions and overexpression of neuronal nitric oxide synthase in the motoneurons correlated with higher 18F-FDG uptake in the ipsilateral cervical spinal cord during the first 2 w post-injury. The GM1 treatment reduced BPRA-induced astrocyte reactions and inhibited the de novo nNOS expressions in spinal motoneurons. The GM1 treatment also protected spinal motoneurons from avulsion within the first 4 w post-injury. The data from this study suggest that 18F-FDG PET/CT could be used to assess the severity of BPRA-induced primary and secondary injuries in the spinal cord. Furthermore, GM1 is an effective drug for reducing primary and secondary spinal cord injuries following BPRA. PMID:26010770

  12. An optical system for monitoring the movement of a micro multipede

    NASA Astrophysics Data System (ADS)

    Pham, D. T.; Djakov, Vladislav; Packianather, Michael S.; Wang, Z.

    2007-10-01

    A micromechanical actuator has been developed using materials with different coefficients of thermal expansion combined in a sandwich cantilever structure. The actuator is thermally operated and could be used in different applications including temperature controlled electrical switches and sensors. A novel application for the microactuator is as the prime mover for a micro multipede. The latter is essentially a multicantilever array where each element can be actuated in sequence to produce planar movements. The actuation is provided by micro heaters integrated into each cantilever. This paper presents the design of an optical system for monitoring the movements of a micro multipede using two methods. The first method, triangulation was adopted to measure the downward movement and flattening of the cantilevers under load. The second method involved direct deflection measurement with an optical microscope. The paper presents both simulation and test results for temperature and mechanical loading and the relationship between electrical power and cantilever deflection.

  13. Micro-lens machining on optical fibers by direct laser ablation

    NASA Astrophysics Data System (ADS)

    Fricke-Begemann, Thomas; Li, Jianzhao; Ihlemann, Jürgen; Herman, Peter R.; Marowsky, Gerd

    2004-10-01

    Beam shaping at the output of optical fibers is required in a variety of applications including optical sensors, telecommunication devices and medical applications. We present a laser micro-machining technique for the fabrication of micro-lenses directly upon the end face of silica fibers using a F2-laser processing station. Ablation is performed in a mask projection arrangement with 25x demagnification. A mask with an occluded circular beam shape is imaged perpendicular to the fiber axis. The fiber is rotated axially while the laser cuts through the fiber, yielding a spherically shaped tip with radius defined by the mask dimensions. Strong 157 nm absorption by the silica glass facilitates precise structuring without micro-crack formation. The quality of the fiber-lenses is characterized by AFM, SEM and by analysing the beam profile at the fiber output.

  14. CT-Guided Interventions Using a Free-Hand, Optical Tracking System: Initial Clinical Experience

    SciTech Connect

    Schubert, Tilman Jacob, Augustinus L.; Pansini, Michele; Liu, David; Gutzeit, Andreas; Kos, Sebastian

    2013-08-01

    PurposeThe present study was designed to evaluate the geometrical accuracy and clinical applicability of a new, free-hand, CT-guided, optical navigation system.MethodsFifteen procedures in 14 consecutive patients were retrospectively analyzed. The navigation system was applied for interventional procedures on small target lesions, in cases with long needle paths, narrow access windows, or when an out-of-plane access was expected. Mean lesion volume was 27.9 ml, and mean distance to target measured was 107.5 mm. Eleven of 15 needle trajectories were planned as out-of-plane approaches regarding the axial CT plane.ResultsNinety-one percent of the biopsies were diagnostic. All therapeutic interventions were technically successful. Targeting precision was high with a mean distance of the needle tip from planned target of 1.98 mm. Mean intervention time was 1:12 h. A statistically significant correlation between angular needle deviation and intervention time (p = 0.007), respiratory movement of the target (p = 0.008), and body mass index (p = 0.02) was detected. None of the evaluated parameters correlated significantly with the distance from the needle tip to the planned target.ConclusionsThe application of a navigation system for complex CT-guided procedures provided safe and effective targeting within a reasonable intervention time in our series.

  15. Micro biochemical sensor based on SOI planar optical waveguide

    NASA Astrophysics Data System (ADS)

    Du, Yang; Dong, Ying

    2014-02-01

    A novel biochemical sensor based on planar optical waveguide is presented in this paper. The features of the sensor are as follows, the planar optical waveguide is made of SOI (Silicon-On-Insulator) material, a Mach Zehnder (M-Z) Interferometer structure is adopted as the sensing part, the sensor chip is fabricated using CMOS compatible technology and the size of the sensor chip is on the micron scale. Compared with the traditional biochemical sensors, this new type of sensor has such notable advantages as miniaturization, integration, high sensitivity and strong anti-interference capability, which provide the sensor with potential applications where traditional biochemical sensors cannot be used. At first, the benefits of SOI material comparing to other optical waveguide materials were analyzed in this paper. Then, according to the optical waveguide mode theory, M-Z interferometer waveguide was designed for the single mode behavior. By theoretical analysis of the radiation loss in the Y-junction of the planar waveguide interferometer, the relationship between the branch angle and the radiation loss was obtained. The power transfer function and the parametric equation of sensitivity of the M-Z interferometer were obtained through analysis of the waveguide structure. At last, the resolution of the effective refractive index and the characteristics of sensitivity of the sensor based on SOI M-Z Interferometer waveguide were simulated and analyzed by utilizing MATLAB software. As a result, the sensitivity of SOI M-Z Interferometer sensor can reach the order of 10-7 magnitude.

  16. Optics development for micro-cell based CPV modules

    NASA Astrophysics Data System (ADS)

    Menard, Etienne; Sullivan, Michael; Wilson, John; Fisher, Brent; Seel, Steve; Meitl, Matthew; Ghosal, Kanchan; Burroughs, Scott

    2011-10-01

    Semprius' two-stage pupil imaging concentrated photovoltaic (CPV) module design incorporates extremely costeffective glass ball secondary lenses in addition to plano-convex primary lens arrays. Optimization of the optical concentrator design involves modeling the illumination uniformity of the primary aperture (the 'pupil') on the multijunction solar cell in response to the secondary lens index, diameter, surface quality, location, and tolerance offsets. We reconcile our theoretical model with experimental results from a single fully adjustable 'concentrating unit cell', and we thereby create a robust model for design updates, for tolerance and sensitivity modeling, and for prediction of full module and on-sun tracker performance based on receiver placement relative to our primary lens array. In this paper, we discuss the rationale behind our optics approach, our criteria for optimizing our optics, and our tolerancing approach. Then we discuss our experimental approach, including our universally adjustable 'concentrating unit' fixture, our light source, and our primary and secondary optics. We show sensitivity curves of our 'concentrating unit' performance to receiver placement, and ball lens size. We reconcile these with our ray-traced model, and, finally, we show predicted module performance based on receiver tolerance data and receiver wiring in the module using a parameter driven high level circuit model.

  17. Strategies for precision adhesive bonding of micro-optical systems

    NASA Astrophysics Data System (ADS)

    Müller, Tobias; Kotnur Venu, Vyshak; Haag, Sebastian; Zontar, Daniel; Sauer, Sebastian; Wenzel, Christian; Brecher, Christian

    2015-02-01

    Today's piezo-based micromanipulator technology allows for highly precise manipulation of optical components. A crucial question for the quality of optical assemblies is the misalignment after curing. The challenge of statistical deviations in the curing process requires a sophisticated knowledge on the relevant process parameters. An approach to meet these requirements is the empirical analysis such as characterization of shrinkage. Gaining sophisticated knowledge about the statistical process of adhesive bonding advances the quality of related production steps like beam-shaping optics, mounting of turning mirrors for fiber coupling or building resonators evaluating power, mode characteristics and beam shape. Maximizing the precision of these single assembly steps fosters the scope of improving the overall efficiency of the entire laser system. At Fraunhofer IPT research activities on the identification of relevant parameters for improved adhesive bonding precision have been undertaken and are ongoing. The influence of the volumetric repeatability of different automatic and manual dispensing methods play an important role. Also, the evaluation of UV-light sources and the relating illumination properties have a significant influence on the bonding result. Furthermore, common UV-curing adhesives are being examined on their performance and reliability for both highest precision prototyping, as well as their application as robust bonding medium in automated optics assembly cells. This paper sums up the parameters of most influence. Overall goal of these activities is the development of a prediction model for optimized shrinkage compensation and thus improved assembly quality.

  18. Design and fabrication of optical homogenizer with micro structure by injection molding process

    NASA Astrophysics Data System (ADS)

    Chen, C.-C. A.; Chang, S.-W.; Weng, C.-J.

    2008-08-01

    This paper is to design and fabricate an optical homogenizer with hybrid design of collimator, toroidal lens array, and projection lens for beam shaping of Gaussian beam into uniform cylindrical beam. TracePro software was used to design the geometry of homogenizer and simulation of injection molding was preceded by Moldflow MPI to evaluate the mold design for injection molding process. The optical homogenizer is a cylindrical part with thickness 8.03 mm and diameter 5 mm. The micro structure of toroidal array has groove height designed from 12 μm to 99 μm. An electrical injection molding machine and PMMA (n= 1.4747) were selected to perform the experiment. Experimental results show that the optics homogenizer has achieved the transfer ratio of grooves (TRG) as 88.98% and also the optical uniformity as 68% with optical efficiency as 91.88%. Future study focuses on development of an optical homogenizer for LED light source.

  19. Development of optics with micro-LED arrays for improved opto-electronic neural stimulation

    NASA Astrophysics Data System (ADS)

    Chaudet, Lionel; Neil, Mark; Degenaar, Patrick; Mehran, Kamyar; Berlinguer-Palmini, Rolando; Corbet, Brian; Maaskant, Pleun; Rogerson, David; Lanigan, Peter; Bamberg, Ernst; Roska, Botond

    2013-03-01

    The breakthrough discovery of a nanoscale optically gated ion channel protein, Channelrhodopsin 2 (ChR2), and its combination with a genetically expressed ion pump, Halorhodopsin, allowed the direct stimulation and inhibition of individual action potentials with light alone. This work reports developments of ultra-bright elec­ tronically controlled optical array sources with enhanced light gated ion channels and pumps for use in systems to further our understanding of both brain and visual function. This work is undertaken as part of the European project, OptoNeuro. Micro-LED arrays permit spatio-temporal control of neuron stimulation on sub-millisecond timescales. However they are disadvantaged by their broad spatial light emission distribution and low fill factor. We present the design and implementation of a projection and micro-optics system for use with a micro-LED array consisting of a 16x16 matrix of 25 μm diameter micro-LEDs with 150 μm centre-to-centre spacing and an emission spectrum centred at 470 nm overlapping the peak sensitivity of ChR2 and its testing on biological samples. The projection system images the micro-LED array onto micro-optics to improve the fill-factor from ~2% to more than 78% by capturing a larger fraction of the LED emission and directing it correctly to the sample plane. This approach allows low fill factor arrays to be used effectively, which in turn has benefits in terms of thermal management and electrical drive from CMOS backplane electronics. The entire projection system is integrated into a microscope prototype to provide stimulation spots at the same size as the neuron cell body (μ10 pm).

  20. MicroCT for comparative morphology: simple staining methods allow high-contrast 3D imaging of diverse non-mineralized animal tissues

    PubMed Central

    Metscher, Brian D

    2009-01-01

    Background Comparative, functional, and developmental studies of animal morphology require accurate visualization of three-dimensional structures, but few widely applicable methods exist for non-destructive whole-volume imaging of animal tissues. Quantitative studies in particular require accurately aligned and calibrated volume images of animal structures. X-ray microtomography (microCT) has the potential to produce quantitative 3D