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Sample records for microscopic optical model

  1. {sup 4}He microscopic optical model potential

    SciTech Connect

    Guo Hairui; Liang Haiying; Han Yinlu; Shen Qingbiao; Xu Yongli

    2011-06-15

    The {sup 4}He microscopic optical model potential is obtained by Green's function method through nuclear matter approximation and local density approximation based on the effective Skyrme interaction. The microscopic optical model potential is analyzed and utilized to calculate the reaction cross sections and elastic scattering angular distributions for the target nuclei in the mass range 12{<=}A{<=}209 with incident {sup 4}He energy up to 400 MeV. The theoretical results are compared with the experimental data.

  2. Optical modeling of Fresnel zoneplate microscopes.

    PubMed

    Naulleau, Patrick P; Mochi, Iacopo; Goldberg, Kenneth A

    2011-07-10

    Defect free masks remain one of the most significant challenges facing the commercialization of extreme ultraviolet (EUV) lithography. Progress on this front requires high-performance wavelength-specific metrology of EUV masks, including high-resolution and aerial-image microscopy performed near the 13.5 nm wavelength. Arguably the most cost-effective and rapid path to proliferating this capability is through the development of Fresnel zoneplate-based microscopes. Given the relative obscurity of such systems, however, modeling tools are not necessarily optimized to deal with them and their imaging properties are poorly understood. Here we present a modeling methodology to analyze zoneplate microscopes based on commercially available optical modeling software and use the technique to investigate the imaging performance of an off-axis EUV microscope design. The modeling predicts that superior performance can be achieved by tilting the zoneplate, making it perpendicular to the chief ray at the center of the field, while designing the zoneplate to explicitly work in that tilted plane. Although the examples presented here are in the realm of EUV mask inspection, the methods described and analysis results are broadly applicable to zoneplate microscopes in general, including full-field soft-x-ray microscopes routinely used in the synchrotron community. PMID:21743581

  3. Optical modeling of Fresnel zoneplate microscopes

    SciTech Connect

    Naulleau, Patrick P.; Mochi, Iacopo; Goldberg, Kenneth A.

    2011-07-10

    Defect free masks remain one of the most significant challenges facing the commercialization of extreme ultraviolet (EUV) lithography. Progress on this front requires high-performance wavelength-specific metrology of EUV masks, including high-resolution and aerial-image microscopy performed near the 13.5 nm wavelength. Arguably the most cost-effective and rapid path to proliferating this capability is through the development of Fresnel zoneplate-based microscopes. Given the relative obscurity of such systems, however, modeling tools are not necessarily optimized to deal with them and their imaging properties are poorly understood. Here we present a modeling methodology to analyze zoneplate microscopes based on commercially available optical modeling software and use the technique to investigate the imaging performance of an off-axis EUV microscope design. The modeling predicts that superior performance can be achieved by tilting the zoneplate, making it perpendicular to the chief ray at the center of the field, while designing the zoneplate to explicitly work in that tilted plane. Although the examples presented here are in the realm of EUV mask inspection, the methods described and analysis results are broadly applicable to zoneplate microscopes in general, including full-field soft-x-ray microscopes routinely used in the synchrotron community.

  4. Optical modeling of Fresnel zoneplate microscopes

    SciTech Connect

    Naulleau, Patrick; Mochi, Iacopo; Goldberg, Kenneth A.

    2011-04-06

    Defect free masks remain one of the most significant challenges facing the commercialization of extreme ultraviolet (EUV) lithography. Progress on this front requires high-performance wavelength-specific metrology of EUV masks, including high-resolution and aerial-image microscopy performed near the 13.5 nm wavelength. Arguably the most cost-effective and rapid path to proliferating this capability is through the development of Fresnel zoneplate-based microscopes. Given the relative obscurity of such systems, however, modeling tools are not necessarily optimized to deal with them and their imaging properties are poorly understood. Here we present a modeling methodology to analyze zoneplate microscopes based on commercially available optical modeling software and use the technique to investigate the imaging performance of an off-axis EUV microscope design. The modeling predicts that superior performance can be achieved by tilting the zoneplate, making it perpendicular to the chief ray at the center of the field, while designing the zoneplate to explicitly work in that tilted plane. Although the examples presented here are in the realm of EUV mask inspection, the methods described and analysis results are broadly applicable to zoneplate microscopes in general, including full-field soft-x-ray microscopes rou tinely used in the synchrotron community.

  5. Microscopic model for all optical switching in ferromagnets

    NASA Astrophysics Data System (ADS)

    Cornelissen, T. D.; Córdoba, R.; Koopmans, B.

    2016-04-01

    The microscopic mechanism behind the all optical switching (AOS) in ferromagnets has triggered intense scientific debate. Here, the microscopic three-temperature model is utilized to describe AOS in a perpendicularly magnetized ferromagnetic Co/Pt system. We demonstrate that AOS in such a ferromagnet can be explained with the Inverse Faraday Effect (IFE). The influence of the strength and lifetime of the IFE induced field pulse on the switching process are investigated. We found that because of strong spin-orbit coupling, the minimal lifetime of the IFE needed to obtain switching is of the order of 0.1 ps, which is shorter than previously assumed. Moreover, spatial images of the domain pattern after AOS in Co/Pt, as well as their dependence on applying an opposite magnetic field, are qualitatively reproduced.

  6. Neutron scattering analysis with microscopic optical model potentials

    SciTech Connect

    Hansen, L.F.

    1991-09-03

    A review of microscopic optical model potentials used in the analysis of neutron scattering and analyzing power data below 100 MeV (5 {le}E{sub n}{le}100 MeV) is presented. The quality of the fits to the data over a wide massd ({sup 6}Li-{sup 239}Pu) and energy range is discussed. It is shown that reasonably good agreement with the data is obtained with only three parameters, {lambda}{sub V}, {lambda}{sub W}, and {lambda}{sub SO}, which show a smooth mass and energy dependence. These parameters are normalizing constants to the real (V), and imaginary (W) central potentials and the real spin-orbit (V{sub SO}) potential. 14 refs., 7 figs.

  7. The Scanning Optical Microscope.

    ERIC Educational Resources Information Center

    Sheppard, C. J. R.

    1978-01-01

    Describes the principle of the scanning optical microscope and explains its advantages over the conventional microscope in the improvement of resolution and contrast, as well as the possibility of producing a picture from optical harmonies generated within the specimen.

  8. Solid state optical microscope

    DOEpatents

    Young, Ian T.

    1983-01-01

    A solid state optical microscope wherein wide-field and high-resolution images of an object are produced at a rapid rate by utilizing conventional optics with a charge-coupled photodiode array. A galvanometer scanning mirror, for scanning in one of two orthogonal directions is provided, while the charge-coupled photodiode array scans in the other orthogonal direction. Illumination light from the object is incident upon the photodiodes, creating packets of electrons (signals) which are representative of the illuminated object. The signals are then processed, stored in a memory, and finally displayed as a video signal.

  9. Solid state optical microscope

    DOEpatents

    Young, I.T.

    1983-08-09

    A solid state optical microscope wherein wide-field and high-resolution images of an object are produced at a rapid rate by utilizing conventional optics with a charge-coupled photodiode array. A galvanometer scanning mirror, for scanning in one of two orthogonal directions is provided, while the charge-coupled photodiode array scans in the other orthogonal direction. Illumination light from the object is incident upon the photodiodes, creating packets of electrons (signals) which are representative of the illuminated object. The signals are then processed, stored in a memory, and finally displayed as a video signal. 2 figs.

  10. LayerOptics: Microscopic modeling of optical coefficients in layered materials

    NASA Astrophysics Data System (ADS)

    Vorwerk, Christian; Cocchi, Caterina; Draxl, Claudia

    2016-04-01

    Theoretical spectroscopy is a powerful tool to describe and predict optical properties of materials. While nowadays routinely performed, first-principles calculations only provide bulk dielectric tensors in Cartesian coordinates. These outputs are hardly comparable with experimental data, which are typically given by macroscopic quantities, crucially depending on the laboratory setup. Even more serious discrepancies can arise for anisotropic materials, e.g., organic crystals, where off-diagonal elements of the dielectric tensor can significantly contribute to the spectral features. Here, we present LayerOptics, a versatile and user-friendly implementation, based on the solution of the Maxwell's equations for anisotropic materials, to compute optical coefficients in anisotropic layered materials. We apply this tool for post-processing full dielectric tensors of molecular materials, including excitonic effects, as computed from many-body perturbation theory using the exciting code. For prototypical examples, ranging from optical to X-ray frequencies, we show the importance of combining accurate ab initio methods to obtain dielectric tensors, with the solution of the Maxwell's equations to compute optical coefficients accounting for optical anisotropy of layered systems. Good agreement with experimental data supports the potential of our approach, in view of achieving microscopic understanding of spectroscopic properties in complex materials.

  11. Increasing student understanding of microscope optics by building and testing the limits of simple, hand-made model microscopes.

    PubMed

    Drace, Kevin; Couch, Brett; Keeling, Patrick J

    2012-01-01

    The ability to effectively use a microscope to observe microorganisms is a crucial skill required for many disciplines within biology, especially general microbiology and cell biology. A basic understanding of the optical properties of light microscopes is required for students to use microscopes effectively, but this subject can also be a challenge to make personally interesting to students. To explore basic optical principles of magnification and resolving power in a more engaging and hands-on fashion, students constructed handmade lenses and microscopes based on Antony van Leeuwenhoek's design using simple materials-paper, staples, glass, and adhesive putty. Students determined the power of their lenses using a green laser pointer to magnify a copper grid of known size, which also allowed students to examine variables affecting the power and resolution of a lens such as diameter, working distance, and wavelength of light. To assess the effectiveness of the laboratory's learning objectives, four sections of a general microbiology course were given a brief pre-activity assessment quiz to determine their background knowledge on the subject. One week after the laboratory activity, students were given the same quiz (unannounced) under similar conditions. Students showed significant gains in their understanding of microscope optics. PMID:23653781

  12. Microscopic optical model potentials for p-nucleus scattering at intermediate energies

    SciTech Connect

    Hemalatha, M.; Gambhir, Y. K.; Kailas, S.; Haider, W.

    2007-03-15

    A comparative study of the microscopic optical potentials viz., semimicroscopic with extended Jeukenne-Lejeune-Mahaux interaction and microscopic Brueckner theory using Hamada-Johnston as well as Urbana V14 soft-core internucleon interactions, has been carried out. These microscopic optical potentials are compared with that of Dirac phenomenology (DP) for the polarized proton-{sup 40}Ca elastic scattering at 35 MeV and 200 MeV. These potentials have different shapes for 200 MeV below 4 fm. In particular, for the real part of the central potential, only the Dirac phenomenology and the microscopic optical potential calculated with the Hamada-Johnston interaction exhibit the well known wine-bottle-bottom shape. It is found that the calculated observables (cross section, analyzing power and spin rotation function) using these potentials having different shapes, compare well with the experiment.

  13. Enabling scanning electron microscope contour-based optical proximity correction models

    NASA Astrophysics Data System (ADS)

    Weisbuch, François; Jantzen, Kenneth

    2015-04-01

    A scanning electron microscope (SEM) is the metrology tool used to accurately characterize very fine structures on wafers, usually by extracting one critical dimension (CD) per SEM image. This approach for optical proximity correction (OPC) modeling requires many measurements resulting in a lengthy cycle time for data collection, review, and cleaning, and faces reliability issues when dealing with critical two-dimensional (2-D) structures. An alternative to CD-based metrology is to use SEM image contours for OPC modeling. To calibrate OPC models with contours, reliable contours matched to traditional CD-SEM measurements are required along with a method to choose structure and site selections (number, type, and image space coverage) specific to a contour-based OPC model calibration. The potential of SEM contour model-based calibration is illustrated by comparing two contour-based models to reference models, one empirical model and a second rigorous simulation-based model. The contour-based models are as good as or better than a CD-based model with a significant advantage in the prediction of complex 2-D configurations with a reduced metrology work load.

  14. Modeling a Miniaturized Scanning Electron Microscope Focusing Column - Lessons Learned in Electron Optics Simulation

    NASA Technical Reports Server (NTRS)

    Loyd, Jody; Gregory, Don; Gaskin, Jessica

    2016-01-01

    This presentation discusses work done to assess the design of a focusing column in a miniaturized Scanning Electron Microscope (SEM) developed at the NASA Marshall Space Flight Center (MSFC) for use in-situ on the Moon-in particular for mineralogical analysis. The MSFC beam column design uses purely electrostatic fields for focusing, because of the severe constraints on mass and electrical power consumption imposed by the goals of lunar exploration and of spaceflight in general. The resolution of an SEM ultimately depends on the size of the focused spot of the scanning beam probe, for which the stated goal here is a diameter of 10 nanometers. Optical aberrations are the main challenge to this performance goal, because they blur the ideal geometrical optical image of the electron source, effectively widening the ideal spot size of the beam probe. In the present work the optical aberrations of the mini SEM focusing column were assessed using direct tracing of non-paraxial rays, as opposed to mathematical estimates of aberrations based on paraxial ray-traces. The geometrical ray-tracing employed here is completely analogous to ray-tracing as conventionally understood in the realm of photon optics, with the major difference being that in electron optics the lens is simply a smoothly varying electric field in vacuum, formed by precisely machined electrodes. Ray-tracing in this context, therefore, relies upon a model of the electrostatic field inside the focusing column to provide the mathematical description of the "lens" being traced. This work relied fundamentally on the boundary element method (BEM) for this electric field model. In carrying out this research the authors discovered that higher accuracy in the field model was essential if aberrations were to be reliably assessed using direct ray-tracing. This led to some work in testing alternative techniques for modeling the electrostatic field. Ultimately, the necessary accuracy was attained using a BEM

  15. Solid-state optical microscope

    DOEpatents

    Young, I.T.

    1981-01-07

    A solid state optical microscope is described wherein wide-field and high-resolution images of an object are produced at a rapid rate by utilizing conventional optics with a charge-coupled photodiode array. Means for scanning in one of two orthogonal directions are provided, while the charge-coupled photodiode array scans in the other orthogonal direction. Illumination light from the object is incident upon the photodiodes, creating packets of electrons (signals) which are representative of the illuminated object. The signals are then processed, stored in a memory, and finally displayed as a video signal.

  16. Scanned optical fiber confocal microscope

    NASA Astrophysics Data System (ADS)

    Dickensheets, David L.; Kino, Gordon S.

    1994-04-01

    The size and weight of conventional optical microscopes often makes them inconvenient for use on the human body or for in-situ examination during materials processing. We describe a new fiber-optic scanning confocal optical microscope which could have a total outside diameter as small as 1 mm, and should lend itself to applications in endoscopy or to optical in vivo histology. The first experimental device utilizes a single-mode optical fiber for illumination and detection. The scanning element is a mechanically resonant fused silica cantilever 1.5 cm long and 0.8 mm across, with a micromachined two-phase zone plate objective mounted at one end. The cantilever is electrostatically scanned near resonance in two dimensions, generating a Lissajous pattern which is scan converted to conventional video for real time display or digitization. The objective lens has N.A. equals 0.25 at (lambda) equals 0.6328 micrometers , with a measured spot size of 1.8 micrometers FWHM.

  17. Optical Analysis of Microscope Images

    NASA Astrophysics Data System (ADS)

    Biles, Jonathan R.

    Microscope images were analyzed with coherent and incoherent light using analog optical techniques. These techniques were found to be useful for analyzing large numbers of nonsymbolic, statistical microscope images. In the first part phase coherent transparencies having 20-100 human multiple myeloma nuclei were simultaneously photographed at 100 power magnification using high resolution holographic film developed to high contrast. An optical transform was obtained by focussing the laser onto each nuclear image and allowing the diffracted light to propagate onto a one dimensional photosensor array. This method reduced the data to the position of the first two intensity minima and the intensity of successive maxima. These values were utilized to estimate the four most important cancer detection clues of nuclear size, shape, darkness, and chromatin texture. In the second part, the geometric and holographic methods of phase incoherent optical processing were investigated for pattern recognition of real-time, diffuse microscope images. The theory and implementation of these processors was discussed in view of their mutual problems of dimness, image bias, and detector resolution. The dimness problem was solved by either using a holographic correlator or a speckle free laser microscope. The latter was built using a spinning tilted mirror which caused the speckle to change so quickly that it averaged out during the exposure. To solve the bias problem low image bias templates were generated by four techniques: microphotography of samples, creation of typical shapes by computer graphics editor, transmission holography of photoplates of samples, and by spatially coherent color image bias removal. The first of these templates was used to perform correlations with bacteria images. The aperture bias was successfully removed from the correlation with a video frame subtractor. To overcome the limited detector resolution it is necessary to discover some analog nonlinear intensity

  18. Microscopic model for the higher-order nonlinearity in optical filaments

    SciTech Connect

    Teleki, A.; Wright, E. M.; Kolesik, M.

    2010-12-15

    Using an exactly soluble one-dimensional atomic model, we explore the idea that the recently observed high-order nonlinearity in optical filaments is due to virtual transitions involving the continuum states. We show that the model's behavior is qualitatively comparable with the experimentally observed crossover from self-focusing to defocusing at high intensities, and only occurs at intensities which result in significant ionization. Based on these observations, we conjecture that this continuum electron nonlinear refraction exhibits strong memory effects and, most importantly, the change of its sign is effectively masked by the defocusing due to free electrons.

  19. Optical microscopic imaging based on VRML language

    NASA Astrophysics Data System (ADS)

    Zhang, Xuedian; Zhang, Zhenyi; Sun, Jun

    2009-11-01

    As so-called VRML (Virtual Reality Modeling Language), is a kind of language used to establish a model of the real world or a colorful world made by people. As in international standard, VRML is the main kind of program language based on the "www" net building, which is defined by ISO, the kind of MIME is x-world or x-VRML. The most important is that it has no relationship with the operating system. Otherwise, because of the birth of VRML 2.0, its ability of describing the dynamic condition gets better, and the interaction of the internet evolved too. The use of VRML will bring a revolutionary change of confocal microscope. For example, we could send different kinds of swatch in virtual 3D style to the net. On the other hand, scientists in different countries could use the same microscope in the same time to watch the same samples by the internet. The mode of sending original data in the model of text has many advantages, such as: the faster transporting, the fewer data, the more convenient updating and fewer errors. In the following words we shall discuss the basic elements of using VRML in the field of Optical Microscopic imaging.

  20. Increasing Student Understanding of Microscope Optics by Building and Testing the Limits of Simple, Hand-Made Model Microscopes†

    PubMed Central

    Drace, Kevin; Couch, Brett; Keeling, Patrick J.

    2012-01-01

    The ability to effectively use a microscope to observe microorganisms is a crucial skill required for many disciplines within biology, especially general microbiology and cell biology. A basic understanding of the optical properties of light microscopes is required for students to use microscopes effectively, but this subject can also be a challenge to make personally interesting to students. To explore basic optical principles of magnification and resolving power in a more engaging and hands-on fashion, students constructed handmade lenses and microscopes based on Antony van Leeuwenhoek’s design using simple materials—paper, staples, glass, and adhesive putty. Students determined the power of their lenses using a green laser pointer to magnify a copper grid of known size, which also allowed students to examine variables affecting the power and resolution of a lens such as diameter, working distance, and wavelength of light. To assess the effectiveness of the laboratory’s learning objectives, four sections of a general microbiology course were given a brief pre-activity assessment quiz to determine their background knowledge on the subject. One week after the laboratory activity, students were given the same quiz (unannounced) under similar conditions. Students showed significant gains in their understanding of microscope optics. PMID:23653781

  1. Heterodyne Interferometry with a Scanning Optical Microscope.

    NASA Astrophysics Data System (ADS)

    Hobbs, Philip Charles Danby

    The design and implementation of a confocal optical microscope which functions as an electronically scanned heterodyne interferometer are described. Theoretical models based on Fourier optics for general samples and on exact series solution of the scalar Helmholtz equation for a class of trench structures are developed and compared with experimental data. Good agreement is obtained. The associated data acquisition system, also described, enables the system to measure both the amplitude (to 12 bits) and the phase (to 0.1^circ) of a returned optical beam, at a continuous rate of 30,000 points per second. The microscope system uses a wide-band tellurium dioxide acousto-optic cell for electronic scanning, frequency shifting, and beam splitting/combining. It uses a stationary reference beam on the sample for vibration cancellation, which results in a system of great vibration immunity. It can measure relief ranging from a few tenths of a micron down to a few Angstroms, and line widths down to well below 0.4 micron, using light of 0.5 micron wavelength. Angstrom resolution can be achieved in a single full-speed scan, without special vibration isolation equipment, providing that folding mirrors are avoided. A signal processing algorithm based on Fourier deconvolution is presented; it takes advantage of the extra bandwidth of a confocal system and the availability of both amplitude and phase, to improve the lateral resolution by approximately a factor of two. Experimental results are shown, which demonstrate phase edge resolution (10%-90%) of 0.45 lambda (raw data), and 0.18 lambda (after filtering), in excellent agreement with the Fourier optics prediction. The exact scalar theory calculates the response of the microscope as it scans over an infinitely long rectangular trench in a plane boundary on which Dirichlet boundary conditions apply. An expansion in cavity modes inside the trench is used to match the field and its derivatives across the mouth of the trench to get

  2. Microscopic Modeling of Intersubband Optical Processes in Type II Semiconductor Quantum Wells: Linear Absorption

    NASA Technical Reports Server (NTRS)

    Li, Jian-Zhong; Kolokolov, Kanstantin I.; Ning, Cun-Zheng

    2003-01-01

    Linear absorption spectra arising from intersubband transitions in semiconductor quantum well heterostructures are analyzed using quantum kinetic theory by treating correlations to the first order within Hartree-Fock approximation. The resulting intersubband semiconductor Bloch equations take into account extrinsic dephasing contributions, carrier-longitudinal optical phonon interaction and carrier-interface roughness interaction which is considered with Ando s theory. As input for resonance lineshape calculation, a spurious-states-free 8-band kp Hamiltonian is used, in conjunction with the envelop function approximation, to compute self-consistently the energy subband structure of electrons in type II InAs/AlSb single quantum well structures. We demonstrate the interplay of nonparabolicity and many-body effects in the mid-infrared frequency range for such heterostructures.

  3. Numerical modeling of the subwavelength phase-change recording using an apertureless scanning near-field optical microscope.

    PubMed

    Grosges, Thomas; Petit, Stéphane; Barchiesi, Dominique; Hudlet, Sylvain

    2004-11-29

    The electromagnetic field enhancement (FE) at the end of the probe of an Apertureless Scanning Near-field Optical Microscope (ASNOM) is used to write nanometric dots in a phase-change medium. The FE acts as a heat source that allows the transition from amorphous to crystalline phase in a Ge2Sb2Te5 layer. Through the 2D Finite Element Method (FEM) we predict the size of the dot as a function of both the illumination duration and the incoming power density. Numerical results are found to be in good agreement with preliminary experimental data. PMID:19488240

  4. Controlled rotation of optically trapped microscopic particles.

    PubMed

    Paterson, L; MacDonald, M P; Arlt, J; Sibbett, W; Bryant, P E; Dholakia, K

    2001-05-01

    We demonstrate controlled rotation of optically trapped objects in a spiral interference pattern. This pattern is generated by interfering an annular shaped laser beam with a reference beam. Objects are trapped in the spiral arms of the pattern. Changing the optical path length causes this pattern, and thus the trapped objects, to rotate. Structures of silica microspheres, microscopic glass rods, and chromosomes are set into rotation at rates in excess of 5 hertz. This technique does not depend on intrinsic properties of the trapped particle and thus offers important applications in optical and biological micromachines. PMID:11340200

  5. Optical Lattices With Quantum Gas Microscope

    NASA Astrophysics Data System (ADS)

    Peng, Amy Wan-Chih

    In this thesis, we demonstrate how the recent achievement of single site resolution using the "Quantum Gas Microscope" can be integrated with a system of ultra-cold atoms in a two dimensional optical lattice, to facilitate the study of condensed matter Hamiltonians in the strongly interacting regime. With the combination of magnetic and optical manipulation of atoms, we show how to reproducibly generate cold two dimensional Bose Einstein Condensates of 87Rb situated at the focus of our "Quantum Gas Microscope", allowing us to utilise the high numerical aperture for both lattice generation and single atom detection. As a first demonstration of the type of study we can perform with this apparatus, we implement the Bose-Hubbard Hamiltonian and give some evidence of the superfluid to Mott insulator transition in this system, seen on the single lattice site level.

  6. Microscopic optical buffering in a harmonic potential

    NASA Astrophysics Data System (ADS)

    Sumetsky, M.

    2015-12-01

    In the early days of quantum mechanics, Schrödinger noticed that oscillations of a wave packet in a one-dimensional harmonic potential well are periodic and, in contrast to those in anharmonic potential wells, do not experience distortion over time. This original idea did not find applications up to now since an exact one-dimensional harmonic resonator does not exist in nature and has not been created artificially. However, an optical pulse propagating in a bottle microresonator (a dielectric cylinder with a nanoscale-high bump of the effective radius) can exactly imitate a quantum wave packet in the harmonic potential. Here, we propose a tuneable microresonator that can trap an optical pulse completely, hold it as long as the material losses permit, and release it without distortion. This result suggests the solution of the long standing problem of creating a microscopic optical buffer, the key element of the future optical signal processing devices.

  7. Microscopic optical buffering in a harmonic potential

    PubMed Central

    Sumetsky, M.

    2015-01-01

    In the early days of quantum mechanics, Schrödinger noticed that oscillations of a wave packet in a one-dimensional harmonic potential well are periodic and, in contrast to those in anharmonic potential wells, do not experience distortion over time. This original idea did not find applications up to now since an exact one-dimensional harmonic resonator does not exist in nature and has not been created artificially. However, an optical pulse propagating in a bottle microresonator (a dielectric cylinder with a nanoscale-high bump of the effective radius) can exactly imitate a quantum wave packet in the harmonic potential. Here, we propose a tuneable microresonator that can trap an optical pulse completely, hold it as long as the material losses permit, and release it without distortion. This result suggests the solution of the long standing problem of creating a microscopic optical buffer, the key element of the future optical signal processing devices. PMID:26689546

  8. Macroscopic-microscopic mass models

    SciTech Connect

    Nix, J.R.; Moller, P.

    1995-07-01

    We discuss recent developments in macroscopic-microscopic mass models, including the 1992 finite-range droplet model, the 1992 extended- Thomas-Fermi Strutinsky-integral model, and the 1994 Thomas-Fermi model, with particular emphasis on how well they extrapolate to new regions of nuclei. We also address what recent developments in macroscopic-microscopic mass models are teaching us about such physically relevant issues as the nuclear curvature energy, a new congruence energy arising from a greater-than-average overlap of neutron and proton wave functions, the nuclear incompressibility coefficient, and the coulomb redistribution energy arising from a central density depression. We conclude with a brief discussion of the recently discovered rock of metastable superheavy nuclei near {sup 272}110 that had been correctly predicted by macroscopic-microscopic models, along with a possible new tack for reaching an island near {sup 290}110 beyond our present horizon.

  9. Spin microscope based on optically detected magnetic resonance

    SciTech Connect

    Berman, Gennady P.; Chernobrod, Boris M.

    2009-11-10

    The invention relates to scanning magnetic microscope which has a photoluminescent nanoprobe implanted in the tip apex of an atomic force microscope (AFM), a scanning tunneling microscope (STM) or a near-field scanning optical microscope (NSOM) and exhibits optically detected magnetic resonance (ODMR) in the vicinity of impaired electron spins or nuclear magnetic moments in the sample material. The described spin microscope has demonstrated nanoscale lateral resolution and single spin sensitivity for the AFM and STM embodiments.

  10. Spin microscope based on optically detected magnetic resonance

    SciTech Connect

    Berman, Gennady P.; Chernobrod, Boris M.

    2010-06-29

    The invention relates to scanning magnetic microscope which has a photoluminescent nanoprobe implanted in the tip apex of an atomic force microscope (AFM), a scanning tunneling microscope (STM) or a near-field scanning optical microscope (NSOM) and exhibits optically detected magnetic resonance (ODMR) in the vicinity of unpaired electron spins or nuclear magnetic moments in the sample material. The described spin microscope has demonstrated nanoscale lateral resolution and single spin sensitivity for the AFM and STM embodiments.

  11. Spin microscope based on optically detected magnetic resonance

    SciTech Connect

    Berman, Gennady P.; Chernobrod, Boris M.

    2010-07-13

    The invention relates to scanning magnetic microscope which has a photoluminescent nanoprobe implanted in the tip apex of an atomic force microscope (AFM), a scanning tunneling microscope (STM) or a near-field scanning optical microscope (NSOM) and exhibits optically detected magnetic resonance (ODMR) in the vicinity of unpaired electron spins or nuclear magnetic moments in the sample material. The described spin microscope has demonstrated nanoscale lateral resolution and single spin sensitivity for the AFM and STM embodiments.

  12. Spin microscope based on optically detected magnetic resonance

    SciTech Connect

    Berman, Gennady P.; Chernobrod, Boris M.

    2009-10-27

    The invention relates to scanning magnetic microscope which has a photoluminescent nanoprobe implanted in the tip apex of an atomic force microscope (AFM), a scanning tunneling microscope (STM) or a near-field scanning optical microscope (NSOM) and exhibits optically detected magnetic resonance (ODMR) in the vicinity of unpaired electron spins or nuclear magnetic moments in the sample material. The described spin microscope has demonstrated nanoscale lateral resolution and single spin sensitivity for the AFM and STM embodiments.

  13. Spin microscope based on optically detected magnetic resonance

    DOEpatents

    Berman, Gennady P.; Chernobrod, Boris M.

    2007-12-11

    The invention relates to scanning magnetic microscope which has a photoluminescent nanoprobe implanted in the tip apex of an atomic force microscope (AFM), a scanning tunneling microscope (STM) or a near-field scanning optical microscope (NSOM) and exhibits optically detected magnetic resonance (ODMR) in the vicinity of unpaired electron spins or nuclear magnetic moments in the sample material. The described spin microscope has demonstrated nanoscale lateral resolution and single spin sensitivity for the AFM and STM embodiments.

  14. Miniature electron microscope beam column optics

    NASA Astrophysics Data System (ADS)

    Loyd, Jody Stuart

    This investigation is in the area of electrostatic lens design with the overarching goal of contributing to the creation of a miniaturized scanning electron microscope (SEM) for use in mineralogical analysis or detection of signs of life on the surface of Mars. Such an instrument could also have application in the exploration of Earth's moon, planetary moons, asteroids, or comets. Other embodiments could include tabletop or field portable SEMs for use on Earth. The scope of this research is in the design of a beam column that attains focusing, demagnification, and aberration control within the smallest achievable package. The goals of planetary exploration and of spaceflight in general impose severe constraints on the instrument's mass and electrical power consumption, while favoring a robust design of small size and high rigidity that is also simple to align. To meet these requirements a design using electrostatic lenses was favored because of the lower power requirement and mass of electrostatic versus magnetic lenses, their relatively simple construction, as well as inherently easier shielding from extraneous fields. In modeling the lens field, a hybrid of a Boundary Element Method (BEM) and a Fourier series solution was employed, whereby an initial solution from the BEM is used to derive the bounding potential of a cylindrical subdomain for the subsequent Fourier series solution. The approach is applicable to many problems in physics and combines the inherent precision of this series solution with the flexibility of BEM to describe practical, non-idealized electrode shapes. The resulting lens field in the Fourier series subdomain is of higher precision, thereby allowing smaller errors in subsequent calculations of electron ray paths. The effects of aberrations are thus easier to observe in tracing non-paraxial rays. A significant speed increase in tracing rays is also observed. The modeling technique has been validated by reproducing example ray-traces through

  15. Computer-controlled optical scanning tile microscope.

    PubMed

    Wang, C; Shumyatsky, P; Zeng, F; Zevallos, M; Alfano, R R

    2006-02-20

    A new type of computer-controlled optical scanning, high-magnification imaging system with a large field of view is described that overcomes the commonly believed incompatibility of achieving both high magnification and a large field of view. The new system incorporates galvanometer scanners, a CCD camera, and a high-brightness LED source for the fast acquisition of a large number of a high-resolution segmented tile images with a magnification of 800x for each tile. The captured segmented tile images are combined to create an effective enlarged view of a target totaling 1.6 mm x 1.2 mm in area. The speed and sensitivity of the system make it suitable for high-resolution imaging and monitoring of a small segmented area of 320 microm x 240 microm with 4 microm resolution. Each tile segment of the target can be zoomed up without loss of the high resolution. This new microscope imaging system gives both high magnification and a large field of view. This microscope can be utilized in medicine, biology, semiconductor inspection, device analysis, and quality control. PMID:16523776

  16. Functional optical imaging at the microscopic level

    PubMed Central

    Salazar Vázquez, Beatriz Y.; Hightower, Ciel Makena; Sapuppo, Francesca; Tartakovsky, Daniel M.; Intaglietta, Marcos

    2010-01-01

    Functional microscopic imaging of in vivo tissues aims at characterizing parameters at the level of the unitary cellular components under normal conditions, in the presence of blood flow, to understand and monitor phenomena that lead to maintaining homeostatic balance. Of principal interest are the setting of shear stress on the endothelium; formation of the plasma layer, where the balance between nitric oxide production and scavenging is established; and formation of the oxygen gradients that determine the distribution of oxygen from blood into the tissue. Optical techniques that enable the analysis of functional microvascular processes are the measurement of blood vessel dimensions by image shearing, the photometric analysis of the extent of the plasma layer, the dual-slit methodology for measuring blood flow velocity, and the direct measurement of oxygen concentration in blood and tissue. Each of these technologies includes the development of paired, related mathematical approaches that enable characterizing the transport properties of the blood tissue system. While the technology has been successful in analyzing the living tissue in experimental conditions, deployment to clinical settings remains an elusive goal, due to the difficulty of obtaining optical access to the depth of the tissue. PMID:20210428

  17. Compact optical design for dual-axes confocal endoscopic microscopes

    NASA Astrophysics Data System (ADS)

    Mandella, Michael J.; Liu, Jonathan T. C.; Piyawattanametha, Wibool; Ra, Hyejun; Hsiung, Pei-Lin; Wong, Larry K.; Solgaard, Olav; Wang, Thomas D.; Contag, Christopher H.; Kino, Gordon S.

    2007-02-01

    Here we describe a simple optical design for a MEMS-based dual-axes fiber optic confocal scanning microscope that has been miniaturized for handheld imaging of tissues, and which is capable of being further scaled to smaller dimensions for endoscope compatibility while preserving its field-of-view (FOV), working distance, and resolution. Based on the principle of parallel beams that are focused by a single parabolic mirror to a common point, the design allows the use of replicated optical components mounted and aligned within a rugged cylindrical housing that is designed for use as a handheld tissue microscope. A MEMS scanner is used for high speed scanning in the X-Y plane below the tissue surface. An additional design feature is a mechanism for controlling a variable working distance, thus producing a scan in the Z direction and allowing capture of 3-D volumetric images of tissue. The design parameters that affect the resolution, FOV, and working distance are analyzed using ASAP TM optical modeling software and verified by experimental results. Other features of this design include use of a solid immersion lens (SIL), which enhances both resolution and FOV, and also provides index matching between the optics and the tissue.

  18. Development of a surface-micromachined confocal scanning optical microscope

    NASA Astrophysics Data System (ADS)

    Dagel, Daryl James

    2001-09-01

    This dissertation describes the development of a confocal scanning optical microscope based on micro-electro- mechanical mirrors. The relatively new field of MicroElectroMechanical Systems (MEMS) has sparked unparalleled synergy between hitherto unrelated fields such as biology and microelectronics. Recently, its outgrowth into optics has resulted in several commercial devices, including switches for telecommunications networks. In essence, MEMS is a new manufacturing technology that allows for increased functionality, reliability, and sophistication of existing systems as well as for development of new, previously impossible or impractical devices. In this dissertation, the design, fabrication, and characterization of a MEMS-based confocal microscope have been accomplished. Following the introductory material on micromachining and confocal microscopy given in Chapter 1, an overview of the current microscope and a survey of previous work in the field, including that of the author, is presented in Chapter 2. Chapter 3 discusses the design and operation of the microscope components, including the laser diode, optical fiber, scanning mirrors, objective lens, and photodetector. Emphasis is placed on modeling the amplitude and frequency response of the scanning mirrors. Chapter 4 summarizes the experiments completed to characterize the response and performance of the microscope. Here, resolution, field-of-view, frequency and amplitude response, and image interpretation are the main focus. Conclusions and directions for future work appear in Chapter 5. A scanning confocal microscope capable of real-time imaging in two dimensions has been demonstrated. The overall size of the imaging head with the 2D scanner is ~2 x 2 mm2, making it suitable for endoscopy. Although not diffraction-limited, the microscope resolution approaches its theoretical limit. In the non-optimized configuration studied here, the transverse resolution is 1.5 μm, and the axial resolution is 7.0

  19. Optical and digital microscopic imaging techniques and applications in pathology.

    PubMed

    Chen, Xiaodong; Zheng, Bin; Liu, Hong

    2011-01-01

    The conventional optical microscope has been the primary tool in assisting pathological examinations. The modern digital pathology combines the power of microscopy, electronic detection, and computerized analysis. It enables cellular-, molecular-, and genetic-imaging at high efficiency and accuracy to facilitate clinical screening and diagnosis. This paper first reviews the fundamental concepts of microscopic imaging and introduces the technical features and associated clinical applications of optical microscopes, electron microscopes, scanning tunnel microscopes, and fluorescence microscopes. The interface of microscopy with digital image acquisition methods is discussed. The recent developments and future perspectives of contemporary microscopic imaging techniques such as three-dimensional and in vivo imaging are analyzed for their clinical potentials. PMID:21483100

  20. Teaching Optics to Biology Students Through Constructing a Light Microscope

    NASA Astrophysics Data System (ADS)

    Ross, Jennifer

    2015-03-01

    The microscope is familiar to many disciplines, including physics, materials science, chemistry, and the life sciences. It demonstrates fundamental aspects of ray and wave optics, making it an ideal system to help educate students in the basic concepts of optics and in measurement principles and techniques. We present an experimental system developed to teach students the basics of ray and wave optics. The students design, build, and test a light microscope made from optics components. We describe the equipment and the basic measurements that students can perform to develop experimental techniques to understand optics principles. Students measure the magnification and test the resolution of the microscope. The system is open and versatile to allow advanced projects such as epi-fluorescence, total internal reflection fluorescence, and optical trapping. We have used this equipment in an optics course, an advanced laboratory course, and graduate-level training modules.

  1. Wave-Based Inversion & Imaging for the Optical Quadrature Microscope

    SciTech Connect

    Lehman, S K

    2005-10-27

    The Center for Subsurface Sensing & Imaging System's (CenSSIS) Optical Quadrature Microscope (OQM) is a narrow band visible light microscope capable of measuring both amplitude and phase of a scattered field. We develop a diffraction tomography, that is, wave-based, scattered field inversion and imaging algorithm, for reconstructing the refractive index of the scattering object.

  2. Mosaicing of optical microscope imagery based on visual information.

    PubMed

    Carozza, Ludovico; Bevilacqua, Alessandro; Piccinini, Filippo

    2011-01-01

    Tools for high-throughput high-content image analysis can simplify and expedite different stages of biological experiments, by processing and combining different information taken at different time and in different areas of the culture. Among the most important in this field, image mosaicing methods provide the researcher with a global view of the biological sample in a unique image. Current approaches rely on known motorized x-y stage offsets and work in batch mode, thus jeopardizing the interaction between the microscopic system and the researcher during the investigation of the cell culture. In this work we present an approach for mosaicing of optical microscope imagery, based on local image registration and exploiting visual information only. To our knowledge, this is the first approach suitable to work on-line with non-motorized microscopes. To assess our method, the quality of resulting mosaics is quantitatively evaluated through on-purpose image metrics. Experimental results show the importance of model selection issues and confirm the soundness of our approach. PMID:22255746

  3. X-ray-optical analytical microscope with two Kumakhov lenses

    NASA Astrophysics Data System (ADS)

    Borisov, G. I.; Kondratenko, R. I.; Odinov, B. V.; Pukhov, A. V.

    2005-07-01

    On the basis of research microscope equipped with a 3D sample stage and two x-ray micro analyzers fitted with Kumakhov polycapillary optics, an x-ray optical scanning microscope (ROCAM) has been developed. The instrument is designed for investigation ofheterogeneous objects in optic and x-ray spectra of photon radiation. Examples of ROCAM application for forensic studies and in mineralogy are shown. The instrument can be used in medicine and biology, metal studies, nuclear power, ecology, micro electronics, in customs, for investigation of pieces of art and so on.

  4. Ultrafast superresolution fluorescence imaging with spinning disk confocal microscope optics

    PubMed Central

    Hayashi, Shinichi; Okada, Yasushi

    2015-01-01

    Most current superresolution (SR) microscope techniques surpass the diffraction limit at the expense of temporal resolution, compromising their applications to live-cell imaging. Here we describe a new SR fluorescence microscope based on confocal microscope optics, which we name the spinning disk superresolution microscope (SDSRM). Theoretically, the SDSRM is equivalent to a structured illumination microscope (SIM) and achieves a spatial resolution of 120 nm, double that of the diffraction limit of wide-field fluorescence microscopy. However, the SDSRM is 10 times faster than a conventional SIM because SR signals are recovered by optical demodulation through the stripe pattern of the disk. Therefore a single SR image requires only a single averaged image through the rotating disk. On the basis of this theory, we modified a commercial spinning disk confocal microscope. The improved resolution around 120 nm was confirmed with biological samples. The rapid dynamics of micro­tubules, mitochondria, lysosomes, and endosomes were observed with temporal resolutions of 30–100 frames/s. Because our method requires only small optical modifications, it will enable an easy upgrade from an existing spinning disk confocal to a SR microscope for live-cell imaging. PMID:25717185

  5. Cantilever based optical interfacial force microscope

    NASA Astrophysics Data System (ADS)

    Bonander, Jeremy R.; Kim, Byung I.

    2008-03-01

    We developed a cantilever based optical interfacial force microscopy (COIFM) that employs a microactuated silicon cantilever and optical detection method to establish the measurement of the single molecular interactions using the force feedback technique. Through the direct measurement of the COIFM force-distance curves, we have demonstrated that the COIFM is capable of unveiling structural and mechanical information on interfacial water at the single molecular level over all distances between two hydrophilic surfaces.

  6. Near-Field Magneto-Optical Microscope

    DOEpatents

    Vlasko-Vlasov, Vitalii; Welp, Ulrich; and Crabtree, George W.

    2005-12-06

    A device and method for mapping magnetic fields of a sample at a resolution less than the wavelength of light without altering the magnetic field of the sample is disclosed. A device having a tapered end portion with a magneto-optically active particle positioned at the distal end thereof in communication with a fiber optic for transferring incoming linearly polarized light from a source thereof to the particle and for transferring reflected light from the particle is provided. The fiber optic has a reflective material trapping light within the fiber optic and in communication with a light detector for determining the polarization of light reflected from the particle as a function of the strength and direction of the magnetic field of the sample. Linearly polarized light from the source thereof transferred to the particle positioned proximate the sample is affected by the magnetic field of the sample sensed by the particle such that the difference in polarization of light entering and leaving the particle is due to the magnetic field of the sample. Relative movement between the particle and sample enables mapping.

  7. Near Field Magneto-Optical Microscope

    DOEpatents

    Vlasko-Vlasov, Vitalii K.; Welp, Ulrich; Crabtree, George W.

    2005-12-06

    A device and method for mapping magnetic fields of a sample at a resolution less than the wavelength of light without altering the magnetic field of the sample is disclosed. A device having a tapered end portion with a magneto-optically active particle positioned at the distal end thereof in communication with a fiber optic for transferring incoming linearly polarized light from a source thereof to the particle and for transferring reflected light from the particle is provided. The fiber optic has a reflective material trapping light within the fiber optic and in communication with a light detector for determining the polarization of light reflected from the particle as a function of the strength and direction of the magnetic field of the sample. Linearly polarized light from the source thereof transferred to the particle positioned proximate the sample is affected by the magnetic field of the sample sensed by the particle such that the difference in polarization of light entering and leaving the particle is due to the magnetic field of the sample. Relative movement between the particle and sample enables mapping.

  8. Research and application of ergonomics to optical microscope

    NASA Astrophysics Data System (ADS)

    Jiang, Xue-kun; Xiao, Ze-xin; Zhang, Jie

    2008-03-01

    The characteristics of the human and the microscope, and their integrated characteristic have been studied respectively in this paper. Our results indicated that the correspondence of (i) focusing installment with human body arm, (ii) the height of ocular with eyes, (iii) visual characteristic with illuminative condition of the optical microscope, should obey the theory of the ergonomics. This was reflected in the structural design and the produce of the product, and therefore, improved the property of the amenity of the machine.

  9. HOMER: the Holographic Optical Microscope for Education and Research

    NASA Astrophysics Data System (ADS)

    Luviano, Anali

    Holography was invented in 1948 by Dennis Gabor and has undergone major advancements since the 2000s leading to the development of commercial digital holographic microscopes (DHM). This noninvasive form of microscopy produces a three-dimensional (3-D) digital model of a sample without altering or destroying the sample, thus allowing the same sample to be studied multiple times. HOMER-the Holographic Optical Microscope for Education and Research-produces a 3-D image from a two-dimensional (2-D) interference pattern captured by a camera that is then put through reconstruction software. This 2-D pattern is created when a reference wave interacts with the sample to produce a secondary wave that interferes with the unaltered part of the reference wave. I constructed HOMER to be an efficient, portable in-line DHM using inexpensive material and free reconstruction software. HOMER uses three different-colored LEDs as light sources. I am testing the performance of HOMER with the goal of producing tri-color images of samples. I'm using small basic biological samples to test the effectiveness of HOMER and plan to transition to complex cellular and biological specimens as I pursue my interest in biophysics. Norwich University.

  10. Microscopic optical potentials for He4 scattering

    NASA Astrophysics Data System (ADS)

    Egashira, Kei; Minomo, Kosho; Toyokawa, Masakazu; Matsumoto, Takuma; Yahiro, Masanobu

    2014-06-01

    We present a reliable double-folding (DF) model for He4-nucleus scattering, using the Melbourne g-matrix nucleon-nucleon interaction that explains nucleon-nucleus scattering with no adjustable parameter. In the DF model, only the target density is taken as the local density in the Melbourne g matrix. For He4 elastic scattering from Ni58 and Pb208 targets in a wide range of incident energies from 20 to 200 MeV/nucleon, the DF model with the target-density approximation (TDA) yields much better agreement with the experimental data than the usual DF model with the frozen-density approximation in which the sum of projectile and target densities is taken as the local density. We also discuss the relation between the DF model with the TDA and the conventional folding model in which the nucleon-nucleus potential is folded with the He4 density.

  11. Scanning optical microscope with long working distance objective

    DOEpatents

    Cloutier, Sylvain G.

    2010-10-19

    A scanning optical microscope, including: a light source to generate a beam of probe light; collimation optics to substantially collimate the probe beam; a probe-result beamsplitter; a long working-distance, infinity-corrected objective; scanning means to scan a beam spot of the focused probe beam on or within a sample; relay optics; and a detector. The collimation optics are disposed in the probe beam. The probe-result beamsplitter is arranged in the optical paths of the probe beam and the resultant light from the sample. The beamsplitter reflects the probe beam into the objective and transmits resultant light. The long working-distance, infinity-corrected objective is also arranged in the optical paths of the probe beam and the resultant light. It focuses the reflected probe beam onto the sample, and collects and substantially collimates the resultant light. The relay optics are arranged to relay the transmitted resultant light from the beamsplitter to the detector.

  12. Auto-aligning stimulated emission depletion microscope using adaptive optics

    PubMed Central

    Gould, Travis J.; Kromann, Emil B.; Burke, Daniel; Booth, Martin J.; Bewersdorf, Joerg

    2013-01-01

    Stimulated emission depletion (STED) microscopy provides diffraction-unlimited resolution in fluorescence microscopy. Imaging at the nanoscale, however, requires precise alignment of the depletion and excitation laser foci of the STED microscope. We demonstrate here that adaptive optics can be implemented to automatically align STED and confocal images with a precision of 4.3 ± 2.3 nm. PMID:23722769

  13. Dual collection mode optical microscope with single-pixel detection

    NASA Astrophysics Data System (ADS)

    Rodríguez, A. D.; Clemente, P.; Fernández-Alonso, Mercedes; Tajahuerce, E.; Lancis, J.

    2015-07-01

    In this work we have developed a single-pixel optical microscope that provides both re ection and transmission images of the sample under test by attaching a diamond pixel layout DMD to a commercial inverted microscope. Our system performs simultaneous measurements of re ection and transmission modes. Besides, in contrast with a conventional system, in our single-element detection system both images belong, unequivocally, to the same plane of the sample. Furthermore, we have designed an algorithm to modify the shape of the projected patterns that improves the resolution and prevents the artifacts produced by the diamond pixel architecture.

  14. A microfabricated scanning confocal optical microscope for in situ imaging

    NASA Astrophysics Data System (ADS)

    Dickensheets, David Lee

    Scanning confocal optical microscopes are well suited for imaging living tissue because of their ability to 'cross section' intact tissue. They are not, however, well suited for imaging tissues in situ. This dissertation describes a new, miniature, mirror scanned, high resolution confocal optical microscope that operates in real time. It is small enough to fit into an endoscope, and may eventually be incorporated into a hypodermic needle. Such a device would provide immediate in-situ tissue assessment at the cellular level and may enable, for example, biopsy without tissue removal. Non-medical applications may include process monitoring and endoscopic inspection. The microfabricated confocal optical scanning microscope, or μCOSM, incorporates single mode optical fiber illumination, silicon torsional scan mirrors, and an off- axis micro diffractive lens. The prototype device is monochromatic, at 633 nm, with a 1.1 mm working distance and 0.25 NA. It achieves a line response of 0.98 μm FWHM, and an axial response of 11.1 μm FWHM. The first part of the dissertation describes the opto- mechanical design of the microscope, which was chosen to be compatible with the microfabrication technologies used for its construction. Then the imaging properties of the off-axis diffractive objective lens are developed, including the aberrations of second and third order which constrain its use. The lens is a surface relief phase grating, and a rigorous electromagnetic analysis is employed to specify the pupil function of the microscope. Then the image forming properties of the μCOSM are derived and compared to experimental results. The second part of the dissertation describes the fabrication of the individual elements of the μCOSM, and their assembly into an imaging instrument. The lens is constructed using electron beam lithography and reactive ion etching of a fused silica substrate. The scanning mirrors for the microscope, which comprise a single crystal silicon plate

  15. Low-price optical microscope for school science education

    NASA Astrophysics Data System (ADS)

    Hoshimiya, Tsutomu; Kumagai, Masaaki

    2007-06-01

    In schools, scientific education with an optical microscope is popularly used. However, scanning apparatus for the microscope is very expensive such that the price is several times higher than the microscope itself. In order to activate children's interest in science, a low-price scanning and imaging function unit compatible to conventional optical microscopes used in schools was designed and manufactured using a personal computer (PC) used in all elementally and middle school education. The designing of imaging apparatus includes two choices: (i) using imaging device (reflection-type), or (ii) using photo-sensor and scanning device (transmission-type). In this paper, the latter method is adopted, considering the educational effect using "Lambert-Beer's law". This apparatus measures optical transmittance of modulated visible light with a photo-detector, and uses audio-input unit of PC as an A/D converter. Scanning unit with a pair of pulse motor drives was also used. Control software was built on Knoppix (an operating system based on freeware Linux), however it is very easy to rewrite to Windows application. By these reasons, this apparatus is low-price (less than microscope price) so that it is one of the best candidates for science education application in schools. As a biological specimen, a wing of spider wasp (Pompilidae) was used. Measured region was 10mm×10mm and the resolution was 100×100 pixels. The photograph of original specimen and the obtained image were shown in Figures (a) and (b), respectively. The obtained image showed a well-resolved detailed structure of the wing. Scanning was done by an external scanning apparatus. However, feeding of scanning pulses through printer port to stepping motor will be available based on the same method.

  16. Electromagnetic vacuum confinement effects in the optical microscopic cavity

    NASA Astrophysics Data System (ADS)

    De Martini, Francesco; Marrocco, Michele; Mataloni, Paolo; Murra, Daniele

    1992-10-01

    The process of the spontaneous emission (SpE) from an active microscopic cavity (microcavity) is shown with emphasis on mirror separation of the order of the optical wavelength. The relevant effects of SpE enhancement and inhibition, non-exponential decay, and emission anisotropy are outlined for a cavity terminated by mirrors bearing either metal -- or semiconductor -- multilayered coatings. Finally, an experiment regarding the possibility of detecting the field distribution within the cavity of the emission wavelength is shown.

  17. All-optical optoacoustic microscope based on wideband pulse interferometry.

    PubMed

    Wissmeyer, Georg; Soliman, Dominik; Shnaiderman, Rami; Rosenthal, Amir; Ntziachristos, Vasilis

    2016-05-01

    Optical and optoacoustic (photoacoustic) microscopy have been recently joined in hybrid implementations that resolve extended tissue contrast compared to each modality alone. Nevertheless, the application of the hybrid technique is limited by the requirement to combine an optical objective with ultrasound detection collecting signal from the same micro-volume. We present an all-optical optoacoustic microscope based on a pi-phase-shifted fiber Bragg grating (π-FBG) with coherence-restored pulsed interferometry (CRPI) used as the interrogation method. The sensor offers an ultra-small footprint and achieved higher sensitivity over piezoelectric transducers of similar size. We characterize the spectral bandwidth of the ultrasound detector and interrogate the imaging performance on phantoms and tissues. We show the first optoacoustic images of biological specimen recorded with π-FBG sensors. We discuss the potential uses of π-FBG sensors based on CRPI. PMID:27128047

  18. High-voltage scanning ion microscope: Beam optics and design

    NASA Astrophysics Data System (ADS)

    Magilin, D.; Ponomarev, A.; Rebrov, V.; Ponomarov, A.

    2015-05-01

    This article is devoted to the conceptual design of a compact high-voltage scanning ion microscope (HVSIM). In an HVSIM design, the ion optical system is based on a high-brightness ion source. Specifically, the ion optical system is divided into two components: an ion injector and a probe-forming system (PFS) that consists of an accelerating tube and a multiplet of quadrupole lenses. The crossover is formed and controlled by the injector, which acts as an object collimator, and is focused on the image plane by the PFS. The ion microprobe has a size of 0.1 μm and an energy of 2 MeV. When the influence of the chromatic and third-order aberrations is theoretically taken into account, the HVSIM forms an ion microprobe.

  19. Microscopic modeling of nitride intersubband absorbance

    NASA Astrophysics Data System (ADS)

    Montano, Ines; Allerman, A. A.; Wierer, J. J.; Moseley, M.; Skogen, E. J.; Tauke-Pedretti, A.; Vawter, G. A.

    III-nitride intersubband structures have recently attracted much interest because of their potential for a wide variety of applications ranging from electro-optical modulators to terahertz quantum cascade lasers. To overcome present simulation limitations we have developed a microscopic absorbance simulator for nitride intersubband devices. Our simulator calculates the band structure of nitride intersubband systems using a fully coupled 8x8 k.p Hamiltonian and determines the material response of a single period in a density-matrix-formalism by solving the Heisenberg equation including many-body and dephasing contributions. After calculating the polarization due to intersubband transitions in a single period, the resulting absorbance of a superlattice structure including radiative coupling between the different periods is determined using a non-local Green's-function formalism. As a result our simulator allows us to predict intersubband absorbance of superlattice structures with microscopically determined lineshapes and linewidths accounting for both many-body and correlation contributions. This work is funded by Sandia National Laboratories Laboratory Directed Research and Development program. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin.

  20. Fiber optic confocal microscope: In vivo precancer detection

    NASA Astrophysics Data System (ADS)

    Carlson, Kristen Dawn

    Cancer is a significant public health problem worldwide. Many cancers originate as precancerous lesions in the epithelium which, when removed in sufficient time, can prevent progression to cancer. However, current detection techniques are typically time-consuming and expensive, limiting their acceptance and accessibility. Optical techniques, such as confocal microscopy, have significant potential to provide clinicians with real-time, high-resolution images of cells and tissue without tissue removal. These images of cell morphology and tissue architecture can be used to characterize tissue and determine the presence or extent of precancer and cancer. This dissertation explores the instrumentation and application of fiber optic reflectance confocal microscopy for in vivo precancer detection. The first part of the dissertation presents in vivo imaging of suspicious lesions in the human uterine cervix and oral mucosa using a fiber bundle based confocal microscope with a complex glass miniature objective lens. Images are analyzed quantitatively and qualitatively to determine the potential of this technology in vivo. An analysis of nuclear density from images of 30 cervical epithelium sites shows differentiation between normal and precancerous sites. Similarly, images from 20 oral mucosa sites demonstrate changes in nuclear density and tissue architecture indicative of progression of precancer and cancer. In addition to this multi-fiber confocal microscope used with a glass objective lens for the clinical studies, imaging of tissue samples has been accomplished with the same confocal system using an injection molded plastic miniature objective lens demonstrating comparable optical quality for a significantly less expensive optical component. Finally, a benchtop prototype of a single fiber confocal microscope using a gimbaled two-axis MEMS scanner has been designed and constructed. Imaging of a resolution target and cellular samples demonstrates sufficient resolution and

  1. Microscopic models for bridging electrostatics and currents

    NASA Astrophysics Data System (ADS)

    Borghi, L.; DeAmbrosis, A.; Mascheretti, P.

    2007-03-01

    A teaching sequence based on the use of microscopic models to link electrostatic phenomena with direct currents is presented. The sequence, devised for high school students, was designed after initial work carried out with student teachers attending a school of specialization for teaching physics at high school, at the University of Pavia. The results obtained with them are briefly presented, because they directed our steps for the development of the teaching sequence. For both the design of the experiments and their interpretation, we drew inspiration from the original works of Alessandro Volta; in addition, a structural model based on the particular role of electrons as elementary charges both in electrostatic phenomena and in currents was proposed. The teaching sequence starts from experiments on charging objects by rubbing and by induction, and engages students in constructing microscopic models to interpret their observations. By using these models and by closely examining the ideas of tension and capacitance, the students acknowledge that a charging (or discharging) process is due to the motion of electrons that, albeit for short time intervals, represent a current. Finally, they are made to see that the same happens in transients of direct current circuits.

  2. Optical-disk-based imaging system to be used as an optical microscope

    NASA Astrophysics Data System (ADS)

    Shima, Takayuki; Fujimaki, Makoto; Awazu, Koichi

    2016-07-01

    An optical disk surface is scanned spirally by laser light, as in the case of digital versatile discs, and a reflectance image is formed by rearranging the scanned intensity results. A prototype system is developed for imaging with a rotary encoder equipped to precisely control the disk rotation angle. We measured Escherichia coli dispersed on an optical disk sample surface and successfully obtained an image that is identical to that obtained using an optical microscope. The system is advantageous as an optical sensor for detecting sub-micrometer- to micrometer-order substances on a large-area surface.

  3. Defects evaluation system for spherical optical surfaces based on microscopic scattering dark-field imaging method.

    PubMed

    Zhang, Yihui; Yang, Yongying; Li, Chen; Wu, Fan; Chai, Huiting; Yan, Kai; Zhou, Lin; Li, Yang; Liu, Dong; Bai, Jian; Shen, Yibing

    2016-08-10

    In the field of automatic optical inspection, it is imperative to measure the defects on spherical optical surfaces. So a novel spherical surface defect evaluation system is established in this paper to evaluate defects on optical spheres. In order to ensure the microscopic scattering dark-field imaging of optical spheres with different surface shape and radius of curvature, illumination with variable aperture angle is employed. In addition, the scanning path of subapertures along the parallels and meridians is planned to detect the large optical spheres. Since analysis shows that the spherical defect information could be lost in the optical imaging, the three-dimensional correction based on a pin-hole model is proposed to recover the actual spherical defects from the captured two-dimensional images. Given the difficulty of subaperture stitching and defect feature extraction in three-dimensional (3D) space after the correction, the 3D subapertures are transformed into a plane to be spliced through geometric projection. Then, methods of the surface integral and calibration are applied to quantitatively evaluate the spherical defects. Furthermore, the 3D panorama of defect distribution on the spherical optical components can be displayed through the inverse projective reconstruction. Finally, the evaluation results are compared with the OLYMPUS microscope, testifying to the micrometer resolution, and the detection error is less than 5%. PMID:27534456

  4. Optical imaging analysis of microscopic radiation dose gradients in Gafchromic EBT film using a digital microscope.

    PubMed

    Keller, Brian M; Peressotti, Chris; Pignol, Jean-Philippe

    2008-08-01

    By providing superior localization and immobilization, stereotactic radiosurgery (SRS) is capable of delivering millimeter spheres of dose to intracranial targets with submillimeter precision. Several authors have proposed new SRS solutions to dramatically reduce beam penumbra to hundreds of microns. These solutions require new quality assurance methods capable of penumbra measurement at the micron scale. This article examines the capability of a digital microscope, with translation stage and associated software, to resolve dose gradients in Gafchromic EBT film at this level. To produce very steep penumbra, films were irradiated in phantom beneath pinhole collimators using lower energy x rays (100 kVp, 300 kVp, and Iridium-192) and minimal geometric penumbra contribution. For film analysis, a method was developed which improved the signal to noise ratio by finding the center of the irradiation spot, generating several radial dose profiles and averaging these to obtain the final off-axis dose profile. Optical density was converted to dose using a calibration curve. The experimentally determined off-axis dose profiles were compared with MCNP Monte Carlo simulations which replicated the irradiation geometry and served to validate our measured data. The measured 80%-20% penumbral widths were 46 microm +/- 26 microm (100 kVp, 2 mm field size), 69 microm +/- m 27 microm (300 kVp, 2 mm field size), and 241 microm +/-31 microm (Ir-192, 1 mm field size). These penumbral widths agreed with Monte Carlo simulations within experimental uncertainty. Our findings suggest that reading Gafchromic EBT films using a digital microscope with translation stage is suitable for the quality assurance of very sharp penumbra able to resolve gradients to within at least 30 microm. PMID:18777933

  5. Optical imaging analysis of microscopic radiation dose gradients in Gafchromic EBT film using a digital microscope

    SciTech Connect

    Keller, Brian M.; Peressotti, Chris; Pignol, Jean-Philippe

    2008-08-15

    By providing superior localization and immobilization, stereotactic radiosurgery (SRS) is capable of delivering millimeter spheres of dose to intracranial targets with submillimeter precision. Several authors have proposed new SRS solutions to dramatically reduce beam penumbra to hundreds of microns. These solutions require new quality assurance methods capable of penumbra measurement at the micron scale. This article examines the capability of a digital microscope, with translation stage and associated software, to resolve dose gradients in Gafchromic EBT film at this level. To produce very steep penumbra, films were irradiated in phantom beneath pinhole collimators using lower energy x rays (100 kVp, 300 kVp, and Iridium-192) and minimal geometric penumbra contribution. For film analysis, a method was developed which improved the signal to noise ratio by finding the center of the irradiation spot, generating several radial dose profiles and averaging these to obtain the final off-axis dose profile. Optical density was converted to dose using a calibration curve. The experimentally determined off-axis dose profiles were compared with MCNP Monte Carlo simulations which replicated the irradiation geometry and served to validate our measured data. The measured 80%-20% penumbral widths were 46 {mu}m{+-}26 {mu}m (100 kVp, 2 mm field size), 69 {mu}m{+-}27 {mu}m (300 kVp, 2 mm field size), and 241 {mu}m{+-}31 {mu}m (Ir-192, 1 mm field size). These penumbral widths agreed with Monte Carlo simulations within experimental uncertainty. Our findings suggest that reading Gafchromic EBT films using a digital microscope with translation stage is suitable for the quality assurance of very sharp penumbra able to resolve gradients to within at least 30 {mu}m.

  6. Virtual Environment for Manipulating Microscopic Particles With Optical Tweezers

    PubMed Central

    Lee, Yong-Gu; Lyons, Kevin W.; LeBrun, Thomas W.

    2003-01-01

    In this paper, virtual reality techniques are used to define an intuitive interface to a nanoscale manipulation device. This device utilizes optical methods to focus laser light to trap and reposition nano-to-microscopic particles. The underlying physics are simulated by the use of Lagrange mechanics. A unique control method for the manipulation of the particles is also provided. The user can naturally grab and steer the particles. Behind the scene, a complex computation is performed to find the new location of the potential field induced by the laser beam that would move the particles accordingly. Haptic feedback is used to constrain the steering motion within the physical capability of the potential field.

  7. Transmission electron microscope sample holder with optical features

    DOEpatents

    Milas, Mirko; Zhu, Yimei; Rameau, Jonathan David

    2012-03-27

    A sample holder for holding a sample to be observed for research purposes, particularly in a transmission electron microscope (TEM), generally includes an external alignment part for directing a light beam in a predetermined beam direction, a sample holder body in optical communication with the external alignment part and a sample support member disposed at a distal end of the sample holder body opposite the external alignment part for holding a sample to be analyzed. The sample holder body defines an internal conduit for the light beam and the sample support member includes a light beam positioner for directing the light beam between the sample holder body and the sample held by the sample support member.

  8. Photothermal modification of optical microscope for noninvasive living cell monitoring

    NASA Astrophysics Data System (ADS)

    Lapotko, Dmitry; Romanovskaya, Tat'yana; Zharov, Vladimir P.

    2001-06-01

    Photothermal method was applied to improve sensing and imaging capabilities of a light microscope in cell studies. We describe the methods, technical details and testing results of cytometric application of Laser Photothermal Phase Microscope (LPPM). The merits of the proposed approach include living single cell monitoring capability, quantitative measurement of cell functional features through the use of cell natural chromophores as the sensors. Such intracellular sensors are activated by the laser pulse and transform an absorbed energy into the heat. The latter causes thermal and mechanical loads to a cell and its components. The second stage of the process includes the reaction of the cell as integral system or of its components to such loads. This reaction is caused by the changes of cell functional and structural state and includes alterations of cell optical properties. Both processes are monitored for a single cell non-invasively with probe laser beam. Pulsed phase contrast dual beam illumination scheme with acquisition of several laser images at different stages of cell-laser interaction was introduced. An acquired cell image is considered as spatially and temporally resolved cell response to non-specific load that is induced in a cell with a pump laser. This method eliminates any cell staining and allows to monitor cell viability and cell reaction to the environmental factors. Also LPPM offers further improvement of spatial and temporal resolution of optical microscope: with pulsed probe laser monitoring we can detect components with the size down to 50 nm and temporal resolution of 10 ns. In our set up the cell is pumped by pulsed laser at 532 nm, 10 ns , 0.01-0.4 mJ. The source of probe beam is a pulsed dye laser (630 nm, 10 nJ, 10 ns) which forms cell phase image. The results obtained with living cells such as drug impact control, single cell dosimetry, immune action of light on a cell demonstrate basic features of LPPM as the tool for the study of the

  9. Microscopic model for ultrafast remagnetization dynamics.

    PubMed

    Chimata, Raghuveer; Bergman, Anders; Bergqvist, Lars; Sanyal, Biplab; Eriksson, Olle

    2012-10-12

    In this Letter, we provide a microscopic model for the ultrafast remagnetization of atomic moments already quenched above the Stoner-Curie temperature by a strong laser fluence. Combining first-principles density functional theory, atomistic spin dynamics utilizing the Landau-Lifshitz-Gilbert equation, and a three-temperature model, we analyze the temporal evolution of atomic moments as well as the macroscopic magnetization of bcc Fe and hcp Co covering a broad time scale, ranging from femtoseconds to picoseconds. Our simulations show a variety of complex temporal behavior of the magnetic properties resulting from an interplay between electron, spin, and lattice subsystems, which causes an intricate time evolution of the atomic moment, where longitudinal and transversal fluctuations result in a macrospin moment that evolves highly nonmonotonically. PMID:23102359

  10. Microscopic optical potential for exotic isotopes from chiral effective field theory

    NASA Astrophysics Data System (ADS)

    Holt, J. W.; Kaiser, N.; Miller, G. A.

    2016-06-01

    We compute the isospin-asymmetry dependence of microscopic optical model potentials from realistic chiral two- and three-body interactions over a range of resolution scales Λ ≃400 -500 MeV. We show that at moderate projectile energies, E =110 -200 MeV, the real isovector part of the optical potential changes sign, a phenomenon referred to as isospin inversion. We also extract the strength and energy dependence of the imaginary isovector optical potential and find no evidence for an analogous phenomenon over the range of energies, E ≤200 MeV, considered in the present work. Finally, we compute for the first time the leading (quadratic) corrections to the Lane parametrization for the isospin-asymmetry dependence of the optical potential and observe an enhanced importance at low scattering energies.

  11. Sub-nanosecond time-resolved near-field scanning magneto-optical microscope.

    PubMed

    Rudge, J; Xu, H; Kolthammer, J; Hong, Y K; Choi, B C

    2015-02-01

    We report on the development of a new magnetic microscope, time-resolved near-field scanning magneto-optical microscope, which combines a near-field scanning optical microscope and magneto-optical contrast. By taking advantage of the high temporal resolution of time-resolved Kerr microscope and the sub-wavelength spatial resolution of a near-field microscope, we achieved a temporal resolution of ∼50 ps and a spatial resolution of <100 nm. In order to demonstrate the spatiotemporal magnetic imaging capability of this microscope, the magnetic field pulse induced gyrotropic vortex dynamics occurring in 1 μm diameter, 20 nm thick CoFeB circular disks has been investigated. The microscope provides sub-wavelength resolution magnetic images of the gyrotropic motion of the vortex core at a resonance frequency of ∼240 MHz. PMID:25725848

  12. Microscopic traffic modelling in urban noise assessment

    NASA Astrophysics Data System (ADS)

    de Coensel, Bert; Botteldooren, Dick; de Muer, Tom; Peeters, Bert; van Blokland, Gijsjan

    2005-04-01

    The temporal structure of the urban soundscape can be rather complex, due to the presence of many screening and reflecting surfaces and many different sound sources, of which traffic noise is the most dominant. From the point of view of soundscape research, the background level as well as the time structure of noise peaks are important. However, these indicators cannot be estimated easily by current noise prediction models, based on static traffic flows. Therefore, a dynamic traffic noise model was used, based on a microscopic traffic simulation. This way, individual vehicles can be traced, each having an associated set of noise sources that can depend on vehicle properties such as speed and acceleration, as well as on road properties such as the surface type. The model further consists of an ISO 9613 based propagation component, which can account for multiple reflections and diffractions. Maps of statistical noise levels, but also of more complicated measures reflecting the time structure of the soundscape, can be produced. This way, the soundscape contribution of single vehicles can be traced, as well as the influence of more general vehicle properties, such as the contribution of vehicle acceleration noise to the soundscape at junctions.

  13. Performance evaluation of a sensorless adaptive optics multiphoton microscope.

    PubMed

    Skorsetz, Martin; Artal, Pablo; Bueno, Juan M

    2016-03-01

    A wavefront sensorless adaptive optics technique was combined with a custom-made multiphoton microscope to correct for specimen-induced aberrations. A liquid-crystal-on-silicon (LCoS) modulator was used to systematically generate Zernike modes during image recording. The performance of the instrument was evaluated in samples providing different nonlinear signals and the benefit of correcting higher order aberrations was always noticeable (in both contrast and resolution). The optimum aberration pattern was stable in time for the samples here involved. For a particular depth location within the sample, the wavefront to be precompensated was independent on the size of the imaged area (up to ∼ 360 × 360 μm(2)). The mode combination optimizing the recorded image depended on the Zernike correction control sequence; however, the final images hardly differed. At deeper locations, a noticeable dominance of spherical aberration was found. The influence of other aberration terms was also compared to the effect of the spherical aberration. PMID:26469361

  14. Inspection strategy for LIGA microstructures using a programmable optical microscope.

    SciTech Connect

    Kurfess, Thomas R; Aigeldinger, Georg; Ceremuga, Joseph T.

    2004-07-01

    The LIGA process has the ability to fabricate very precise, high aspect ratio mesoscale structures with microscale features [l]. The process consists of multiple steps before a final part is produced. Materials native to the LIGA process include metals and photoresists. These structures are routinely measured for quality control and process improvement. However, metrology of LIGA structures is challenging because of their high aspect ratio and edge topography. For the scale of LIGA structures, a programmable optical microscope is well suited for lateral (XU) critical dimension measurements. Using grayscale gradient image processing with sub-pixel interpolation, edges are detected and measurements are performed. As with any measurement, understanding measurement uncertainty is necessary so that appropriate conclusions are drawn from the data. Therefore, the abilities of the inspection tool and the obstacles presented by the structures under inspection should be well understood so that precision may be quantified. This report presents an inspection method for LIGA microstructures including a comprehensive assessment of the uncertainty for each inspection scenario.

  15. A quantum gas microscope for detecting single atoms in a Hubbard-regime optical lattice.

    PubMed

    Bakr, Waseem S; Gillen, Jonathon I; Peng, Amy; Fölling, Simon; Greiner, Markus

    2009-11-01

    Recent years have seen tremendous progress in creating complex atomic many-body quantum systems. One approach is to use macroscopic, effectively thermodynamic ensembles of ultracold atoms to create quantum gases and strongly correlated states of matter, and to analyse the bulk properties of the ensemble. For example, bosonic and fermionic atoms in a Hubbard-regime optical lattice can be used for quantum simulations of solid-state models. The opposite approach is to build up microscopic quantum systems atom-by-atom, with complete control over all degrees of freedom. The atoms or ions act as qubits and allow the realization of quantum gates, with the goal of creating highly controllable quantum information systems. Until now, the macroscopic and microscopic strategies have been fairly disconnected. Here we present a quantum gas 'microscope' that bridges the two approaches, realizing a system in which atoms of a macroscopic ensemble are detected individually and a complete set of degrees of freedom for each of them is determined through preparation and measurement. By implementing a high-resolution optical imaging system, single atoms are detected with near-unity fidelity on individual sites of a Hubbard-regime optical lattice. The lattice itself is generated by projecting a holographic mask through the imaging system. It has an arbitrary geometry, chosen to support both strong tunnel coupling between lattice sites and strong on-site confinement. Our approach can be used to directly detect strongly correlated states of matter; in the context of condensed matter simulation, this corresponds to the detection of individual electrons in the simulated crystal. Also, the quantum gas microscope may enable addressing and read-out of large-scale quantum information systems based on ultracold atoms. PMID:19890326

  16. Single 3D cell segmentation from optical CT microscope images

    NASA Astrophysics Data System (ADS)

    Xie, Yiting; Reeves, Anthony P.

    2014-03-01

    The automated segmentation of the nucleus and cytoplasm regions in 3D optical CT microscope images has been achieved with two methods, a global threshold gradient based approach and a graph-cut approach. For the first method, the first two peaks of a gradient figure of merit curve are selected as the thresholds for cytoplasm and nucleus segmentation. The second method applies a graph-cut segmentation twice: the first identifies the nucleus region and the second identifies the cytoplasm region. Image segmentation of single cells is important for automated disease diagnostic systems. The segmentation methods were evaluated with 200 3D images consisting of 40 samples of 5 different cell types. The cell types consisted of columnar, macrophage, metaplastic and squamous human cells and cultured A549 cancer cells. The segmented cells were compared with both 2D and 3D reference images and the quality of segmentation was determined by the Dice Similarity Coefficient (DSC). In general, the graph-cut method had a superior performance to the gradient-based method. The graph-cut method achieved an average DSC of 86% and 72% for nucleus and cytoplasm segmentations respectively for the 2D reference images and 83% and 75% for the 3D reference images. The gradient method achieved an average DSC of 72% and 51% for nucleus and cytoplasm segmentation for the 2D reference images and 71% and 51% for the 3D reference images. The DSC of cytoplasm segmentation was significantly lower than for the nucleus since the cytoplasm was not differentiated as well by image intensity from the background.

  17. Modeling tumor cell migration: From microscopic to macroscopic models

    NASA Astrophysics Data System (ADS)

    Deroulers, Christophe; Aubert, Marine; Badoual, Mathilde; Grammaticos, Basil

    2009-03-01

    It has been shown experimentally that contact interactions may influence the migration of cancer cells. Previous works have modelized this thanks to stochastic, discrete models (cellular automata) at the cell level. However, for the study of the growth of real-size tumors with several million cells, it is best to use a macroscopic model having the form of a partial differential equation (PDE) for the density of cells. The difficulty is to predict the effect, at the macroscopic scale, of contact interactions that take place at the microscopic scale. To address this, we use a multiscale approach: starting from a very simple, yet experimentally validated, microscopic model of migration with contact interactions, we derive a macroscopic model. We show that a diffusion equation arises, as is often postulated in the field of glioma modeling, but it is nonlinear because of the interactions. We give the explicit dependence of diffusivity on the cell density and on a parameter governing cell-cell interactions. We discuss in detail the conditions of validity of the approximations used in the derivation, and we compare analytic results from our PDE to numerical simulations and to some in vitro experiments. We notice that the family of microscopic models we started from includes as special cases some kinetically constrained models that were introduced for the study of the physics of glasses, supercooled liquids, and jamming systems.

  18. Macroscopic model of scanning force microscope

    DOEpatents

    Guerra-Vela, Claudio; Zypman, Fredy R.

    2004-10-05

    A macroscopic version of the Scanning Force Microscope is described. It consists of a cantilever under the influence of external forces, which mimic the tip-sample interactions. The use of this piece of equipment is threefold. First, it serves as direct way to understand the parts and functions of the Scanning Force Microscope, and thus it is effectively used as an instructional tool. Second, due to its large size, it allows for simple measurements of applied forces and parameters that define the state of motion of the system. This information, in turn, serves to compare the interaction forces with the reconstructed ones, which cannot be done directly with the standard microscopic set up. Third, it provides a kinematics method to non-destructively measure elastic constants of materials, such as Young's and shear modules, with special application for brittle materials.

  19. Hyperspectral unmixing using macroscopic and microscopic mixture models

    NASA Astrophysics Data System (ADS)

    Close, Ryan; Gader, Paul; Wilson, Joseph

    2014-01-01

    Macroscopic and microscopic mixture models and algorithms for hyperspectral unmixing are presented. Unmixing algorithms are derived from an objective function. The objective function incorporates the linear mixture model for macroscopic unmixing and a nonlinear mixture model for microscopic unmixing. The nonlinear mixture model is derived from a bidirectional reflectance distribution function for microscopic mixtures. The algorithm is designed to unmix hyperspectral images composed of macroscopic or microscopic mixtures. The mixture types and abundances at each pixel can be estimated directly from the data without prior knowledge of mixture types. Endmembers can also be estimated. Results are presented using synthetic data sets of macroscopic and microscopic mixtures and using well-known, well-characterized laboratory data sets. The unmixing accuracy of this new physics-based algorithm is compared to linear methods and to results published for other nonlinear models. The proposed method achieves the best unmixing accuracy.

  20. Interferometric and optical tests of water window imaging x ray microscopes

    NASA Technical Reports Server (NTRS)

    Johnson, R. Barry

    1993-01-01

    Interferometric tests of Schwarzchild X-ray Microscope are performed to evaluate the optical properties and alignment of the components. Photographic measurements of the spatial resolution, focal properties, and vignetting characteristics of the prototype Water Window Imaging X-ray Microscope are made and analyzed.

  1. In vivo imaging of the Drosophila Melanogaster heart using a novel optical coherence tomography microscope

    NASA Astrophysics Data System (ADS)

    Izatt, Susan D.; Choma, Michael A.; Israel, Steven; Wessells, Robert J.; Bodmer, Rolf; Izatt, Joseph A.

    2005-03-01

    Real time in vivo optical coherence tomography (OCT) imaging of the adult fruit fly Drosophila melanogaster heart using a newly designed OCT microscope allows accurate assessment of cardiac anatomy and function. D. melanogaster has been used extensively in genetic research for over a century, but in vivo evaluation of the heart has been limited by available imaging technology. The ability to assess phenotypic changes with micrometer-scale resolution noninvasively in genetic models such as D. melanogaster is needed in the advancing fields of developmental biology and genetics. We have developed a dedicated small animal OCT imaging system incorporating a state-of-the-art, real time OCT scanner integrated into a standard stereo zoom microscope which allows for simultaneous OCT and video imaging. System capabilities include A-scan, B-scan, and M-scan imaging as well as automated 3D volumetric acquisition and visualization. Transverse and sagittal B-mode scans of the four chambered D. melanogaster heart have been obtained with the OCT microscope and are consistent with detailed anatomical studies from the literature. Further analysis by M-mode scanning is currently under way to assess cardiac function as a function of age and sex by determination of shortening fraction and ejection fraction. These studies create control cardiac data on the wild type D. melanogaster, allowing subsequent evaluation of phenotypic cardiac changes in this model after regulated genetic mutation.

  2. Adaptive optics-optical coherence tomography: optimizing visualization of microscopic retinal structures in three dimensions

    NASA Astrophysics Data System (ADS)

    Zawadzki, Robert J.; Choi, Stacey S.; Jones, Steven M.; Oliver, Scot S.; Werner, John S.

    2007-05-01

    Adaptive optics-optical coherence tomography (AO-OCT) permits improved imaging of microscopic retinal structures by combining the high lateral resolution of AO with the high axial resolution of OCT, resulting in the narrowest three-dimensional (3D) point-spread function (PSF) of all in vivo retinal imaging techniques. Owing to the high volumetric resolution of AO-OCT systems, it is now possible, for the first time, to acquire images of 3D cellular structures in the living retina. Thus, with AO-OCT, those retinal structures that are not visible with AO or OCT alone (e.g., bundles of retinal nerve fiber layers, 3D mosaic of photoreceptors, 3D structure of microvasculature, and detailed structure of retinal disruptions) can be visualized. Our current AO-OCT instrumentation uses spectrometer-based Fourier-domain OCT technology and two-deformable-mirror-based AO wavefront correction. We describe image processing methods that help to remove motion artifacts observed in volumetric data, followed by innovative data visualization techniques [including two-dimensional (2D) and 3D representations]. Finally, examples of microscopic retinal structures that are acquired with the University of California Davis AO-OCT system are presented.

  3. Optimization of microscopic and macroscopic second order optical nonlinearities

    NASA Technical Reports Server (NTRS)

    Marder, Seth R.; Perry, Joseph W.

    1993-01-01

    Nonlinear optical materials (NLO) can be used to extend the useful frequency range of lasers. Frequency generation is important for laser-based remote sensing and optical data storage. Another NLO effect, the electro-optic effect, can be used to modulate the amplitude, phase, or polarization state of an optical beam. Applications of this effect in telecommunications and in integrated optics include the impression of information on an optical carrier signal or routing of optical signals between fiber optic channels. In order to utilize these effects most effectively, it is necessary to synthesize materials which respond to applied fields very efficiently. In this talk, it will be shown how the development of a fundamental understanding of the science of nonlinear optics can lead to a rational approach to organic molecules and materials with optimized properties. In some cases, figures of merit for newly developed materials are more than an order of magnitude higher than those of currently employed materials. Some of these materials are being examined for phased-array radar and other electro-optic switching applications.

  4. Optical microscope combined with the nanopipette-based quartz tuning fork-atomic force microscope for nanolithography

    NASA Astrophysics Data System (ADS)

    An, Sangmin; Stambaugh, Corey; Kwon, Soyoung; Lee, Kunyoung; Kim, Bongsu; Kim, Qwhan; Jhe, Wonho

    2013-09-01

    We demonstrated the optical microscope (OM) combined with nanopipette-based quartz tuning fork - atomic force microscope (QTF-AFM) for nanolithography. The nanoparticle (Au, 5 nm), nanowire, PDMS solutions are ejected onto the substrate through the nano/microaperture of the pulled pipette, and the nano/microscale objects were in-situ formed on the surface with the proposed patterning system, while the position is defined by monitoring the phenomena on the substrate with a home-made OM. After forming of capillary condensation between apex of the pipette tip and the surface, the electric field is applied to extract out the inside liquid to the substrate and the nano/microscale objects are fabricated. The nanoscale patterning size can be controlled by the aperture diameters of the pulled pipette.

  5. A Microscopic Optical Potential Approach to {sup 6,8}He+p Elastic Scattering

    SciTech Connect

    Lukyanov, V. K.; Zemlyanaya, E. V.; Lukyanov, K. V.; Kadrev, D. N.; Antonov, A. N.; Gaidarov, M. K.; Massen, S. E.

    2009-08-26

    A microscopic approach to calculate the optical potential (OP) with the real part obtained by a folding procedure and with the imaginary part inherent in the high-energy approximation (HEA) is applied to study the {sup 6,8}He+p elastic scattering data at energies of tens of MeV/N. The OP's and the cross sections are calculated using different models for the neutron and proton densities of {sup 6,8}He. The role of the spin-orbit (SO) potential and effects of the energy and density dependence of the effective NN forces are studied. Comparison of the calculations with the available experimental data on the elastic scattering differential cross sections at beam energies <100 MeV/N is performed and conclusions on the role of the aforesaid effects are made. It is shown that the present approach, which uses only parameters that renormalize the depths of the OP, can be applied along with other methods like that from the microscopic g-matrix description of the complex proton optical potential.

  6. Charge radii in macroscopic-microscopic mass models

    SciTech Connect

    Buchinger, F.; Pearson, J.M.

    2005-11-01

    We show that the FRLDM model currently being used in macroscopic-microscopic fission-barrier calculations gives a rather poor agreement with measured charge radii. Considerable improvement in this respect can be made by adjusting the diffuseness parameter b.

  7. Transformation of the vortex beam in the optical vortex scanning microscope

    NASA Astrophysics Data System (ADS)

    Płociniczak, Łukasz; Popiołek-Masajada, Agnieszka; Szatkowski, Mateusz; Wojnowski, Dariusz

    2016-07-01

    We investigate the microscopic system in which the Gaussian beam with embedded optical vortex is used. The optical vortex is introduced by vortex lens. The vortex lens shift induces a precise nanometer shift of the embedded vortices inside the focused spot. The analytical formula for the complex amplitude of the focused spot with off-axis vortex was calculated, to our knowledge, for the first time. This solution is an important step in the development of the optical vortex scanning microscope. Experimental results are also presented that demonstrate the behavior of such a beam in an experimental setup.

  8. Quantitative readout of optically encoded gold nanorods using an ordinary dark-field microscope

    NASA Astrophysics Data System (ADS)

    Mercatelli, Raffaella; Ratto, Fulvio; Centi, Sonia; Soria, Silvia; Romano, Giovanni; Matteini, Paolo; Quercioli, Franco; Pini, Roberto; Fusi, Franco

    2013-09-01

    In this paper we report on a new use for dark-field microscopy in order to retrieve two-dimensional maps of optical parameters of a thin sample such as a cryptograph, a histological section, or a cell monolayer. In particular, we discuss the construction of quantitative charts of light absorbance and scattering coefficients of a polyvinyl alcohol film that was embedded with gold nanorods and then etched using a focused mode-locked Ti:Sapphire oscillator. Individual pulses from this laser excite plasmonic oscillations of the gold nanorods, thus triggering plastic deformations of the particles and their environment, which are confined within a few hundred nm of the light focus. In turn, these deformations modify the light absorbance and scattering landscape, which can be measured with optical resolution in a dark-field microscope equipped with an objective of tuneable numerical aperture. This technique may prove to be valuable for various applications, such as the fast readout of optically encoded data or to model functional interactions between light and biological tissue at the level of cellular organelles, including the photothermolysis of cancer.In this paper we report on a new use for dark-field microscopy in order to retrieve two-dimensional maps of optical parameters of a thin sample such as a cryptograph, a histological section, or a cell monolayer. In particular, we discuss the construction of quantitative charts of light absorbance and scattering coefficients of a polyvinyl alcohol film that was embedded with gold nanorods and then etched using a focused mode-locked Ti:Sapphire oscillator. Individual pulses from this laser excite plasmonic oscillations of the gold nanorods, thus triggering plastic deformations of the particles and their environment, which are confined within a few hundred nm of the light focus. In turn, these deformations modify the light absorbance and scattering landscape, which can be measured with optical resolution in a dark

  9. Low-energy 6He scattering in a microscopic model

    NASA Astrophysics Data System (ADS)

    Descouvemont, P.

    2016-03-01

    A microscopic version of the continuum discretized coupled channel (CDCC) method is used to investigate 6He scattering on 27Al,58Ni,120Sn, and 208Pb at energies around the Coulomb barrier. The 6He nucleus is described by an antisymmetric 6-nucleon wave function, defined in the resonating group method. The 6He continuum is simulated by square-integrable positive-energy states. The model is based only on well-known nucleon-target potentials and therefore does not depend on any adjustable parameter. I show that experimental elastic cross sections are fairly well reproduced. The calculation suggests that breakup effects increase for high-mass targets. For a light system such as 6He+27Al , breakup effects are small, and a single-channel approximation provides fair results. This property is explained by a very simple model, based on the sharp cutoff approximation for the scattering matrix. I also investigate the 6He-target optical potentials, which confirm that breakup channels are more important when the mass increases. At large distances, polarization effects increase the Coulomb barrier and provide a long-tail absorption component in the imaginary part of the nucleus-nucleus interaction.

  10. A sample holder with integrated laser optics for an ELMITEC photoemission electron microscope

    SciTech Connect

    Gierster, L.; Pape, L.; Ünal, A. A.; Kronast, F.

    2015-02-15

    We present a new sample holder compatible with ELMITEC Photoemission Electron Microscopes (PEEMs) containing an optical lens and a mirror. With the integrated optical elements, a laser beam is focused from the back side of the sample at normal incidence, yielding a minimum spot size of about 1 μm. This opens up new possibilities for local laser excitations in PEEM experiments such as imaging all-optical magnetization switching at a small length scale.

  11. A microscopic steam engine implemented in an optical tweezer

    NASA Astrophysics Data System (ADS)

    Quinto-Su, Pedro A.

    2014-12-01

    The introduction of improved steam engines at the end of the 18th century marked the start of the industrial revolution and the birth of classical thermodynamics. Currently, there is great interest in miniaturizing heat engines, but so far traditional heat engines operating with the expansion and compression of gas have not reached length scales shorter than one millimeter. Here, a micrometer-sized piston steam engine is implemented in an optical tweezer. The piston is a single colloidal microparticle that is driven by explosive vapourization of the surrounding liquid (cavitation bubbles) and by optical forces at a rate between a few tens of Hertz and one kilo-Hertz. The operation of the engine allows to exert impulsive forces with optical tweezers and induce streaming in the liquid, similar to the effect of transducers when driven at acoustic and ultrasound frequencies.

  12. A microscopic steam engine implemented in an optical tweezer.

    PubMed

    Quinto-Su, Pedro A

    2014-01-01

    The introduction of improved steam engines at the end of the 18th century marked the start of the industrial revolution and the birth of classical thermodynamics. Currently, there is great interest in miniaturizing heat engines, but so far traditional heat engines operating with the expansion and compression of gas have not reached length scales shorter than one millimeter. Here, a micrometer-sized piston steam engine is implemented in an optical tweezer. The piston is a single colloidal microparticle that is driven by explosive vapourization of the surrounding liquid (cavitation bubbles) and by optical forces at a rate between a few tens of Hertz and one kilo-Hertz. The operation of the engine allows to exert impulsive forces with optical tweezers and induce streaming in the liquid, similar to the effect of transducers when driven at acoustic and ultrasound frequencies. PMID:25523395

  13. Elucidating microscopic structure and dynamics in optically tweezed environments

    NASA Astrophysics Data System (ADS)

    Roy, Debjit; Mondal, Dipankar; Goswami, Debabrata

    2015-02-01

    To probe the structure and dynamics of molecules under optical trapping conditions, we exploit the effect of femtosecond Fluorescence Resonance Energy Transfer (FRET) between dye molecules coated on the surface of polystyrene microspheres of various sizes suspended in water. The use of femtosecond laser pulses enables sensitive detection through two-photon fluorescence (TPF). Unlike conventional backscatter signal, the TPF signal shows a slow counterintuitive decay for the trapped microspheres when they are not fully within the laser illuminated volume. This decay is a characteristic sign of the occurrence of the FRET process. For microspheres with sizes less than the trapping focal volume, trapping of multiple particles can occur leading to the formation of optically bound clusters. Using different laser polarizations, we also extract information about the structure and dynamics of such optically bound clusters as a consequence of FRET.

  14. Detection of microscopic defects in optical fiber coatings using angle-resolved skew rays.

    PubMed

    Chen, George Y; Monro, Tanya M; Lancaster, David G

    2016-09-01

    Microscopic defects in optical fiber coatings can be an impending catastrophe for high-power fiber laser and telecommunications systems and are difficult to detect with conventional methods. We demonstrate a highly sensitive interrogation technique that can readily identify faults such as microscopic nicks, scrapes, low-quality recoatings, and internal defects in fibers and their coatings, based on skew ray excitation and angle-resolved analysis. PMID:27607966

  15. Single-pulse CARS based multimodal nonlinear optical microscope for bioimaging.

    PubMed

    Kumar, Sunil; Kamali, Tschackad; Levitte, Jonathan M; Katz, Ori; Hermann, Boris; Werkmeister, Rene; Považay, Boris; Drexler, Wolfgang; Unterhuber, Angelika; Silberberg, Yaron

    2015-05-18

    Noninvasive label-free imaging of biological systems raises demand not only for high-speed three-dimensional prescreening of morphology over a wide-field of view but also it seeks to extract the microscopic functional and molecular details within. Capitalizing on the unique advantages brought out by different nonlinear optical effects, a multimodal nonlinear optical microscope can be a powerful tool for bioimaging. Bringing together the intensity-dependent contrast mechanisms via second harmonic generation, third harmonic generation and four-wave mixing for structural-sensitive imaging, and single-beam/single-pulse coherent anti-Stokes Raman scattering technique for chemical sensitive imaging in the finger-print region, we have developed a simple and nearly alignment-free multimodal nonlinear optical microscope that is based on a single wide-band Ti:Sapphire femtosecond pulse laser source. Successful imaging tests have been realized on two exemplary biological samples, a canine femur bone and collagen fibrils harvested from a rat tail. Since the ultra-broad band-width femtosecond laser is a suitable source for performing high-resolution optical coherence tomography, a wide-field optical coherence tomography arm can be easily incorporated into the presented multimodal microscope making it a versatile optical imaging tool for noninvasive label-free bioimaging. PMID:26074561

  16. Desktop near-field thermal-lens microscope for thermo-optical detection in microfluidics.

    PubMed

    Smirnova, Adelina; Proskurnin, Mikhail A; Mawatari, Kazuma; Kitamori, Takehiko

    2012-09-01

    A new compact near-field desktop-sized diode laser thermal-lens microscope for analysis in microfluidics was proposed. A novel beam-alignment and detection systems provided high signal stability and, along with reduced number of optical elements rendered the instrument portable. The detection of nonfluorescent model species (Fe(II)-bathophenanthroline chelate) in water showed good linearity in the range of 5 × 10(-9) to 1 × 10(-4) M, and the limit of detection was 3.5 × 10(-9) M, which corresponded to 3.5 × 10(-7) absorbance units and provided a 20-fold enhancement in sensitivity compared with existing schematic. PMID:22965721

  17. Comprehensive study of unexpected microscope condensers formed in sample arrangements commonly used in optical microscopy.

    PubMed

    Desai, Darshan B; Aldawsari, Mabkhoot Mudith S; Alharbi, Bandar Mohammed H; Sen, Sanchari; Grave de Peralta, Luis

    2015-09-01

    We show that various setups for optical microscopy which are commonly used in biomedical laboratories behave like efficient microscope condensers that are responsible for observed subwavelength resolution. We present a series of experiments and simulations that reveal how inclined illumination from such unexpected condensers occurs when the sample is perpendicularly illuminated by a microscope's built-in white-light source. In addition, we demonstrate an inexpensive add-on optical module that serves as an efficient and lightweight microscope condenser. Using such add-on optical module in combination with a low-numerical-aperture objective lens and Fourier plane imaging microscopy technique, we demonstrate detection of photonic crystals with a period nearly eight times smaller than the Rayleigh resolution limit. PMID:26368905

  18. Imaging of quantum Hall edge states under quasiresonant excitation by a near-field scanning optical microscope

    SciTech Connect

    Ito, H.; Shibata, Y.; Mamyoda, S.; Ootuka, Y.; Nomura, S.; Kashiwaya, S.; Yamaguchi, M.; Akazaki, T.; Tamura, H.

    2013-12-04

    A high resolution mapping of quantum Hall edge states has been performed by locally creating electrons with small excess energies with a near-field scanning optical microscope in a dilution refrigerator. We have observed fine structures parallel to the edge in photovoltage signals, which appear only at low temperature. The observed fine structures near sample edges have been seen to shift inward with increase in magnetic field in accordance with Chklovskii Shklovskii, and Glazman model.

  19. The standardization of super resolution optical microscopic images based on DICOM

    NASA Astrophysics Data System (ADS)

    Xia, Wei; Gao, Xin

    2015-03-01

    Super resolution optical microscopy allows the capture of images with a higher resolution than the diffraction limit. However, due to the lack of a standard format, the processing, visualization, transfer, and exchange of Super Resolution Optical Microscope (SROM) images are inconvenient. In this work, we present an approach to standardize the SROM images based on the Digital Imaging and Communication in Medicine (DICOM) standard. The SROM images and associated information are encapsulated and converted to DICOM images based on the Visible Light Microscopic Image Information Object Definition of DICOM. The new generated SROM images in DICOM format can be displayed, processed, transferred, and exchanged by using most medical image processing tools.

  20. Nanostructured diffractive optical devices for soft X-ray microscopes

    NASA Astrophysics Data System (ADS)

    Hambach, D.; Peuker, M.; Schneider, G.

    2001-07-01

    The new transmission X-ray microscope (TXM) installed at the BESSY II electron storage ring uses an off-axis transmission zone plate (OTZ) as diffractive and focusing element of the condenser-monochromator setup. A high resolution micro-zone plate (MZP) forms a magnified image on a CCD-detector. Both, the OTZ with an active area of up to 24 mm2 and the MZP with zone widths as small as 25 nm are generated by a process including electron beam lithography (EBL), dry etching and subsequent electroplating of nickel on top of silicon membrane substrates with about 100- 150 nm thickness. The combination of a larger zone width and the usage of nickel zone structures allows to increase the diffraction efficiency of the condenser element at least by a factor of 3 compared to the earlier used KZP7 condenser zone plate in the TXM at BESSY I. Groove diffraction efficiencies of 21.6% and 14.7% were measured for MZP objectives with 40 and 25 nm outermost zone width, respectively.

  1. Ultrafast chirped optical waveform recorder using a time microscope

    SciTech Connect

    Bennett, Corey Vincent

    2015-04-21

    A new technique for capturing both the amplitude and phase of an optical waveform is presented. This technique can capture signals with many THz of bandwidths in a single shot (e.g., temporal resolution of about 44 fs), or be operated repetitively at a high rate. That is, each temporal window (or frame) is captured single shot, in real time, but the process may be run repeatedly or single-shot. By also including a variety of possible demultiplexing techniques, this process is scalable to recoding continuous signals.

  2. Observation of Amorphous Recording Marks Using Reflection-Mode Near-Field Scanning Optical Microscope Supported by Optical Interference Method

    NASA Astrophysics Data System (ADS)

    Sakai, Masaru; Mononobe, Shuji; Yusu, Keiichiro; Tadokoro, Toshiyasu; Saiki, Toshiharu

    2005-09-01

    A signal enhancing technique for a reflection-mode near-field scanning optical microscope (NSOM) is proposed. Optical interference between the signal light, from an aperture at the tip of a tapered optical fiber, and the reflected light, from a metallic coating around the aperture, enhances the signal intensity. We used a rewritable high-definition digital versatile disc (HD DVD) with dual recording layers as a sample medium, and demonstrated observation of amorphous recording marks on the semitransparent (the first) recording layer. In spite of low optical contrast between the crystal region and the amorphous region on this layer, we successfully observed recording marks with good contrast.

  3. Microscopic to Macroscopic Dynamical Models of Sociality

    NASA Astrophysics Data System (ADS)

    Solis Salas, Citlali; Woolley, Thomas; Pearce, Eiluned; Dunbar, Robin; Maini, Philip; Social; Evolutionary Neuroscience Research Group (Senrg) Collaboration

    To help them survive, social animals, such as humans, need to share knowledge and responsibilities with other members of the species. The larger their social network, the bigger the pool of knowledge available to them. Since time is a limited resource, a way of optimising its use is meeting amongst individuals whilst fulfilling other necessities. In this sense it is useful to know how many, and how often, early humans could meet during a given period of time whilst performing other necessary tasks, such as food gathering. Using a simplified model of these dynamics, which comprehend encounter and memory, we aim at producing a lower-bound to the number of meetings hunter-gatherers could have during a year. We compare the stochastic agent-based model to its mean-field approximation and explore some of the features necessary for the difference between low population dynamics and its continuum limit. We observe an emergent property that could have an inference in the layered structure seen in each person's social organisation. This could give some insight into hunter-gatherer's lives and the development of the social layered structure we have today. With support from the Mexican Council for Science and Technology (CONACyT), the Public Education Secretariat (SEP), and the Mexican National Autonomous University's Foundation (Fundacion UNAM).

  4. Chamber for the optical manipulation of microscopic particles

    DOEpatents

    Buican, Tudor N.; Upham, Bryan D.

    1992-01-01

    A particle control chamber enables experiments to be carried out on biological cells and the like using a laser system to trap and manipulate the particles. A manipulation chamber provides a plurality of inlet and outlet ports for the particles and for fluids used to control or to contact the particles. A central manipulation area is optically accessible by the laser and includes first enlarged volumes for containing a selected number of particles for experimentation. A number of first enlarged volumes are connected by flow channels through second enlarged volumes. The second enlarged volumes act as bubble valves for controlling the interconnections between the first enlarged volumes. Electrode surfaces may be applied above the first enlarged volumes to enable experimentation using the application of electric fields within the first enlarged volumes. A variety of chemical and environmental conditions may be established within individual first enlarged volumes to enable experimental conditions for small scale cellular interactions.

  5. Novel microscope-integrated stereoscopic heads-up display for intrasurgical optical coherence tomography

    PubMed Central

    Shen, Liangbo; Carrasco-Zevallos, Oscar; Keller, Brenton; Viehland, Christian; Waterman, Gar; Hahn, Paul S.; Kuo, Anthony N.; Toth, Cynthia A.; Izatt, Joseph A.

    2016-01-01

    Intra-operative optical coherence tomography (OCT) requires a display technology which allows surgeons to visualize OCT data without disrupting surgery. Previous research and commercial intrasurgical OCT systems have integrated heads-up display (HUD) systems into surgical microscopes to provide monoscopic viewing of OCT data through one microscope ocular. To take full advantage of our previously reported real-time volumetric microscope-integrated OCT (4D MIOCT) system, we describe a stereoscopic HUD which projects a stereo pair of OCT volume renderings into both oculars simultaneously. The stereoscopic HUD uses a novel optical design employing spatial multiplexing to project dual OCT volume renderings utilizing a single micro-display. The optical performance of the surgical microscope with the HUD was quantitatively characterized and the addition of the HUD was found not to substantially effect the resolution, field of view, or pincushion distortion of the operating microscope. In a pilot depth perception subject study, five ophthalmic surgeons completed a pre-set dexterity task with 50.0% (SD = 37.3%) higher success rate and in 35.0% (SD = 24.8%) less time on average with stereoscopic OCT vision compared to monoscopic OCT vision. Preliminary experience using the HUD in 40 vitreo-retinal human surgeries by five ophthalmic surgeons is reported, in which all surgeons reported that the HUD did not alter their normal view of surgery and that live surgical maneuvers were readily visible in displayed stereoscopic OCT volumes. PMID:27231616

  6. Novel microscope-integrated stereoscopic heads-up display for intrasurgical optical coherence tomography.

    PubMed

    Shen, Liangbo; Carrasco-Zevallos, Oscar; Keller, Brenton; Viehland, Christian; Waterman, Gar; Hahn, Paul S; Kuo, Anthony N; Toth, Cynthia A; Izatt, Joseph A

    2016-05-01

    Intra-operative optical coherence tomography (OCT) requires a display technology which allows surgeons to visualize OCT data without disrupting surgery. Previous research and commercial intrasurgical OCT systems have integrated heads-up display (HUD) systems into surgical microscopes to provide monoscopic viewing of OCT data through one microscope ocular. To take full advantage of our previously reported real-time volumetric microscope-integrated OCT (4D MIOCT) system, we describe a stereoscopic HUD which projects a stereo pair of OCT volume renderings into both oculars simultaneously. The stereoscopic HUD uses a novel optical design employing spatial multiplexing to project dual OCT volume renderings utilizing a single micro-display. The optical performance of the surgical microscope with the HUD was quantitatively characterized and the addition of the HUD was found not to substantially effect the resolution, field of view, or pincushion distortion of the operating microscope. In a pilot depth perception subject study, five ophthalmic surgeons completed a pre-set dexterity task with 50.0% (SD = 37.3%) higher success rate and in 35.0% (SD = 24.8%) less time on average with stereoscopic OCT vision compared to monoscopic OCT vision. Preliminary experience using the HUD in 40 vitreo-retinal human surgeries by five ophthalmic surgeons is reported, in which all surgeons reported that the HUD did not alter their normal view of surgery and that live surgical maneuvers were readily visible in displayed stereoscopic OCT volumes. PMID:27231616

  7. Evaluation of an optical microscope method for coal-pyrite/marcasite differentiation

    SciTech Connect

    Sanner, Jr, W. S.; Meteney, D. L.

    1980-05-01

    A reflected-polarized light microscope technique for coal marcasite-pyrite differentiation is detailed. Presence of the two minerals was verified by x-ray diffraction analysis. The optical technique produced marcasite content values that were consistently lower than those measured by x-ray diffraction. Although the optical technique produces data that are at best semi-quantitative, it can be used to approximate (+-20%) marcasite concentration in coal without a heavy mineral concentration step.

  8. Optical scatter imaging: a microscopic modality for the rapid morphological assay of living cells

    NASA Astrophysics Data System (ADS)

    Boustany, Nada N.

    2007-02-01

    Tumors derived from epithelial cells comprise the majority of human tumors and their growth results from the accumulation of multiple mutations affecting cellular processes critical for tissue homeostasis, including cell proliferation and cell death. To understand these processes and address the complexity of cancer cell function, multiple cellular responses to different experimental conditions and specific genetic mutations must be analyzed. Fundamental to this endeavor is the development of rapid cellular assays in genetically defined cells, and in particular, the development of optical imaging methods that allow dynamic observation and real-time monitoring of cellular processes. In this context, we are developing an optical scatter imaging technology that is intended to bridge the gap between light and electron microscopy by rapidly providing morphometric information about the relative size and shape of non-spherical organelles, with sub-wavelength resolution. Our goal is to complement current microscopy techniques used to study cells in-vitro, especially in long-term time-lapse studies of living cells, where exogenous labels can be toxic, and electron microscopy will destroy the sample. The optical measurements are based on Fourier spatial filtering in a standard microscope, and could ultimately be incorporated into existing high-throughput diagnostic platforms for cancer cell research and histopathology of neoplastic tissue arrays. Using an engineered epithelial cell model of tumor formation, we are currently studying how organelle structure and function are altered by defined genetic mutations affecting the propensity for cell death and oncogenic potential, and by environmental conditions promoting tumor growth. This talk will describe our optical scatter imaging technology and present results from our studies on apoptosis, and the function of BCL-2 family proteins.

  9. Physical microscopic model of proteins under force.

    PubMed

    Dokholyan, Nikolay V

    2012-06-14

    Nature has evolved proteins to counteract forces applied on living cells, and has designed proteins that can sense forces. One can appreciate Nature's ingenuity in evolving these proteins to be highly sensitive to force and to have a high dynamic force range at which they operate. To achieve this level of sensitivity, many of these proteins are composed of multiple domains and linking peptides connecting these domains, each of them having their own force response regimes. Here, using a simple model of a protein, we address the question of how each individual domain responds to force. We also ask how multidomain proteins respond to forces. We find that the end-to-end distance of individual domains under force scales linearly with force. In multidomain proteins, we find that the force response has a rich range: at low force, extension is predominantly governed by "weaker" linking peptides or domain intermediates, while at higher force, the extension is governed by unfolding of individual domains. Overall, the force extension curve comprises multiple sigmoidal transitions governed by unfolding of linking peptides and domains. Our study provides a basic framework for the understanding of protein response to force, and allows for interpretation experiments in which force is used to study the mechanical properties of multidomain proteins. PMID:22375559

  10. Development of a super-resolution optical microscope for directional dark matter search experiment

    NASA Astrophysics Data System (ADS)

    Alexandrov, A.; Asada, T.; Consiglio, L.; D`Ambrosio, N.; De Lellis, G.; Di Crescenzo, A.; Di Marco, N.; Furuya, S.; Hakamata, K.; Ishikawa, M.; Katsuragawa, T.; Kuwabara, K.; Machii, S.; Naka, T.; Pupilli, F.; Sirignano, C.; Tawara, Y.; Tioukov, V.; Umemoto, A.; Yoshimoto, M.

    2016-07-01

    Nuclear emulsion is a perfect choice for a detector for directional DM search because of its high density and excellent position accuracy. The minimal detectable track length of a recoil nucleus in emulsion is required to be at least 100 nm, making the resolution of conventional optical microscopes insufficient to resolve them. Here we report about the R&D on a super-resolution optical microscope to be used in future directional DM search experiments with nuclear emulsion as a detector media. The microscope will be fully automatic, will use novel image acquisition and analysis techniques, will achieve the spatial resolution of the order of few tens of nm and will be capable of reconstructing recoil tracks with the length of at least 100 nm with high angular resolution.

  11. Acousto-Optic Tunable Filter Hyperspectral Microscope Imaging Method for Characterizing Spectra from Foodborne Pathogens.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hyperspectral microscope imaging (HMI) method, which provides both spatial and spectral characteristics of samples, can be effective for foodborne pathogen detection. The acousto-optic tunable filter (AOTF)-based HMI method can be used to characterize spectral properties of biofilms formed by Salmon...

  12. Assessment of a liquid lens enabled in vivo optical coherence microscope.

    PubMed

    Murali, Supraja; Meemon, Panomsak; Lee, Kye-Sung; Kuhn, William P; Thompson, Kevin P; Rolland, Jannick P

    2010-06-01

    The optical aberrations induced by imaging through skin can be predicted using formulas for Seidel aberrations of a plane-parallel plate. Knowledge of these aberrations helps to guide the choice of numerical aperture (NA) of the optics we can use in an implementation of Gabor domain optical coherence microscopy (GD-OCM), where the focus is the only aberration adjustment made through depth. On this basis, a custom-designed, liquid-lens enabled dynamic focusing optical coherence microscope operating at 0.2 NA is analyzed and validated experimentally. As part of the analysis, we show that the full width at half-maximum metric, as a characteristic descriptor for the point spread function, while commonly used, is not a useful metric for quantifying resolution in non-diffraction-limited systems. Modulation transfer function (MTF) measurements quantify that the liquid lens performance is as predicted by design, even when accounting for the effect of gravity. MTF measurements in a skinlike scattering medium also quantify the performance of the microscope in its potential applications. To guide the fusion of images across the various focus positions of the microscope, as required in GD-OCM, we present depth of focus measurements that can be used to determine the effective number of focusing zones required for a given goal resolution. Subcellular resolution in an onion sample, and high-definition in vivo imaging in human skin are demonstrated with the custom-designed and built microscope. PMID:20517356

  13. Calculations of {sup 8}He+p elastic cross sections using a microscopic optical potential

    SciTech Connect

    Lukyanov, V. K.; Zemlyanaya, E. V.; Lukyanov, K. V.; Kadrev, D. N.; Antonov, A. N.; Gaidarov, M. K.; Massen, S. E.

    2009-08-15

    An approach to calculate microscopic optical potential with the real part obtained by a folding procedure and with the imaginary part inherent in the high-energy approximation is applied to study the {sup 8}He+p elastic-scattering data at energies of tens of MeV/nucleon. The neutron and proton density distributions obtained in different models for {sup 8}He are used in the calculations of the differential cross sections. The role of the spin-orbit potential is studied. Comparison of the calculations with the available experimental data on the elastic-scattering differential cross sections at beam energies of 15.7, 26.25, 32, 66, and 73 MeV/nucleon is performed. The problem of the ambiguities of the depths of each component of the optical potential is considered by means of the imposed physical criterion related to the known behavior of the volume integrals as functions of the incident energy. It is shown also that the role of the surface absorption is rather important, in particular for the lowest incident energies (e.g., 15.7 and 26.25 MeV/nucleon)

  14. A microscopic model for chemically-powered Janus motors.

    PubMed

    Huang, Mu-Jie; Schofield, Jeremy; Kapral, Raymond

    2016-07-01

    Very small synthetic motors that make use of chemical reactions to propel themselves in solution hold promise for new applications in the development of new materials, science and medicine. The prospect of such potential applications, along with the fact that systems with many motors or active elements display interesting cooperative phenomena of fundamental interest, has made the study of synthetic motors an active research area. Janus motors, comprising catalytic and noncatalytic hemispheres, figure prominently in experimental and theoretical studies of these systems. While continuum models of Janus motor systems are often used to describe motor dynamics, microscopic models that are able to account for intermolecular interactions, many-body concentration gradients, fluid flows and thermal fluctuations provide a way to explore the dynamical behavior of these complex out-of-equilibrium systems that does not rely on approximations that are often made in continuum theories. The analysis of microscopic models from first principles provides a foundation from which the range of validity and limitations of approximate theories of the dynamics may be assessed. In this paper, a microscopic model for the diffusiophoretic propulsion of Janus motors, where motor interactions with the environment occur only through hard collisions, is constructed, analyzed and compared to theoretical predictions. Microscopic simulations of both single-motor and many-motor systems are carried out to illustrate the results. PMID:27241052

  15. A method to determine the number of nanoparticles in a cluster using conventional optical microscopes

    SciTech Connect

    Kang, Hyeonggon; Attota, Ravikiran Tondare, Vipin; Vladár, András E.; Kavuri, Premsagar

    2015-09-07

    We present a method that uses conventional optical microscopes to determine the number of nanoparticles in a cluster, which is typically not possible using traditional image-based optical methods due to the diffraction limit. The method, called through-focus scanning optical microscopy (TSOM), uses a series of optical images taken at varying focus levels to achieve this. The optical images cannot directly resolve the individual nanoparticles, but contain information related to the number of particles. The TSOM method makes use of this information to determine the number of nanoparticles in a cluster. Initial good agreement between the simulations and the measurements is also presented. The TSOM method can be applied to fluorescent and non-fluorescent as well as metallic and non-metallic nano-scale materials, including soft materials, making it attractive for tag-less, high-speed, optical analysis of nanoparticles down to 45 nm diameter.

  16. The construction and characterization of optical traps for manipulating microscopic particles

    NASA Astrophysics Data System (ADS)

    Thompson, Tiffany; Behringer, Ernest

    2011-04-01

    Optical traps use tightly focused laser light to manipulate microscopic particles and have applications in nanofabrication, characterizing DNA, and in vitro fertilization [1]. We will describe the design, construction, and characterization of an optical trap that is capable of trapping and imaging 3 μm polystyrene spheres using a 12 mW HeNe laser. The design was based on previous work [2,3] describing how to build affordable optical traps. We will discuss trapping forces and their calibration. [4pt] [1] D.G. Grier, "A Revolution in Optical Manipulation," Nature 424, 810-816 (2003). [0pt] [2] S.P. Smith et al., "Inexpensive optical tweezers for undergraduate laboratories," Am. J. Phys. 67 (1), 26-35 (1999).[0pt] [3] J. Bechhoefer et al., "Faster, cheaper, safer optical tweezers for the undergraduate laboratory," Am. J. Phys. 70 (4), 393-400 (2001).

  17. Order parameter in complex dipolar structures: Microscopic modeling

    NASA Astrophysics Data System (ADS)

    Prosandeev, S.; Bellaiche, L.

    2008-02-01

    Microscopic models have been used to reveal the existence of an order parameter that is associated with many complex dipolar structures in magnets and ferroelectrics. This order parameter involves a double cross product of the local dipoles with their positions. It provides a measure of subtle microscopic features, such as the helicity of the two domains inherent to onion states, curvature of the dipolar pattern in flower states, or characteristics of sets of vortices with opposite chirality (e.g., distance between the vortex centers and/or the magnitude of their local dipoles).

  18. High precision surface metrology of x-ray optics with an interferometric microscope

    NASA Astrophysics Data System (ADS)

    Lacey, Ian; Artemiev, Nikolay A.; McKinney, Wayne R.; Merthe, Daniel J.; Yashchuk, Valeriy V.

    2013-09-01

    We describe a systematic procedure developed for surface characterization of super polished x-ray optical components with an interferometric microscope. In this case, obtaining trustworthy metrology data requires thorough accounting of the instrument's optical aberrations, its spatial resolution, and random noise. We analyze and cross compare two general experimental approaches to eliminate the aberration contribution. The reference surface approach relies on aberration evaluation with successive measurements of a high quality reference mirror. The so called super smooth measurement mode consists of subtracting two surface profiles measured over two statistically uncorrelated areas of the optics under test. The precisely measured instrument's modulation transfer function (MTF) and random noise spectrum allows us to correct the aberration-amended surface topography in the spatial frequency domain. While the developed measurement procedure is general and can be applied to various metrology instruments, the specific results presented are from a Zygo NewView™ 7300 microscope.

  19. Novel microscope-integrated stereoscopic display for intrasurgical optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Shen, Liangbo; Carrasco-Zevallos, Oscar; Keller, Brenton; Viehland, Christian; Waterman, Gar; Desouza, Philip; Hahn, Paul; Kuo, Anthony; Toth, Cynthia A.; Izatt, Joseph A.

    2015-03-01

    The first generation of intrasurgical optical coherence tomography (OCT) systems displayed OCT data onto a separate computer monitor, requiring surgeons to look away from the surgical microscope. In order to provide real-time OCT feedback without requiring surgeons to look away during surgeries, recent prototype research and commercial intrasurgical OCT systems have integrated heads-up display (HUD) systems into the surgical microscopes to allow the surgeons to access the OCT data and the surgical field through the oculars concurrently. However, all current intrasurgical OCT systems with a HUD are only capable of imaging through one ocular limiting the surgeon's depth perception of OCT volumes. Stereoscopy is an effective technology to dramatically increase depth perception by presenting an image from slightly different angles to each eye. Conventional stereoscopic HUD use a pair of micro displays which require bulky optics. Several new approaches for HUDs are reported to use only one micro display at the expense of image brightness or increased footprint. Therefore, these techniques for HUD are not suitable to be integrated into microscopes. We have developed a novel stereoscopic HUD which uses spatial multiplexing to project stereo views into both oculars simultaneously with only one micro-display and three optical elements for our microscope-integrated OCT system. Simultaneous stereoscopic views of OCT volumes are computed in real time by GPU-enabled OCT system software. We present, to our knowledge, the first microscope integrated stereoscopic HUD used for intrasurgical OCT with a novel optical design for stereoscopic viewing devices and report on its preliminary use in human vitreoretinal surgeries.

  20. Wolter X-Ray Microscope Computed Tomography Ray-Trace Model with Preliminary Simulation Results

    SciTech Connect

    Jackson, J A

    2006-02-27

    It is proposed to build a Wolter X-ray Microscope Computed Tomography System in order to characterize objects to sub-micrometer resolution. Wolter Optics Systems use hyperbolic, elliptical, and/or parabolic mirrors to reflect x-rays in order to focus or magnify an image. Wolter Optics have been used as telescopes and as microscopes. As microscopes they have been used for a number of purposes such as measuring emission x-rays and x-ray fluoresce of thin biological samples. Standard Computed Tomography (CT) Systems use 2D radiographic images, from a series of rotational angles, acquired by passing x-rays through an object to reconstruct a 3D image of the object. The x-ray paths in a Wolter X-ray Microscope will be considerably different than those of a standard CT system. There is little information about the 2D radiographic images that can be expected from such a system. There are questions about the quality, resolution and focusing range of an image created with such a system. It is not known whether characterization information can be obtained from these images and whether these 2D images can be reconstructed to 3D images of the object. A code has been developed to model the 2D radiographic image created by an object in a Wolter X-ray Microscope. This code simply follows the x-ray through the object and optics. There is no modeling at this point of other effects, such as scattering, reflection losses etc. Any object, of appropriate size, can be used in the model code. A series of simulations using a number of different objects was run to study the effects of the optics. The next step will be to use this model to reconstruct an object from the simulated data. Funding for the project ended before this goal could be accomplished. The following documentation includes: (1) background information on current X-ray imaging systems, (2) background on Wolter Optics, (3) description of the Wolter System being used, (4) purpose, limitations and development of the modeling

  1. Nuclear masses from unified macroscopic-microscopic model

    SciTech Connect

    Moeller, P.; Nix, J.F.

    1988-07-01

    We calculate ground-state masses for 4678 nuclei ranging from /sup 16/O to /sup 318/122 by means of an improved version of the macroscopic-microscopic model employed in our 1981 mass calculation, which uses a Yukawa-plus-exponential model for the macroscopic term and a folded-Yukawa single-particle potential as starting point for the microscopic term. Some of the new features now incorporated are a new model for the average pairing strength, the solution of the microscopic pairing equations by use of the Lipkin-Nogami method with approximate particle-number conservation, the use of experimental mass uncertainties in determining the model parameters, and an estimation of the theoretical error of the model by application of the maximum-likelihood method. Only five parameters are determined from least-squares fitting to the nuclear masses; the other constants in the model are taken from previous work with no adjustment. The resulting theoretical error in the calculated ground-state masses fo 1593 nuclei ranging from /sup 16/O to /sup 263/106 is 0.832 MeV. We also extend the calculation to some additional nuclei in the heavy and superheavy region that were not considered in 1981. The present calculation represents an interim report on a project in which we plan to make further improvements and extend the region of nuclei considered to the neutron and proton drip lines. copyright 1988 Academic Press, Inc.

  2. Low Temperature Apertureless Near-field Scanning Optical Microscope for Optical Spectroscopy of Single Ge/Si Quantum Dots

    NASA Astrophysics Data System (ADS)

    Zhu, Henry; Patil, N. G.; Levy, Jeremy

    2001-03-01

    A low-temperature apertureless near-field scanning optical microscope has been designed and constructed for the purpose of investigating the optical properties of individual Ge/Si quantum dots. The microscope fits in the 37 mm bore of a Helium vapor magneto-optic cryostat, allowing operations down to liquid helium temperatures in magnetic fields up to 8 Tesla. An in situ microscope objective focuses light onto the sample, which is scanned in the three spatial directions using a compact modular stage. An AFM/STM tip resides on the top; feedback is achieved using a quartz tuning fork oscillator. Both tip and objective are attached to inertial sliding motors that can move in fine (10 nm) steps to achieve touchdown and focus. A femtosecond optical parametric oscillator is used to excite carriers in the quantum dots both resonantly and non-resonantly; scattered luminescence from the AFM/STM tip is collected and analyzed spectrally using a 1/2 meter imaging spectrometer and a LN_2-cooled InGaAs array. We gratefully acknowledge NSF (DMR-9701725, IMR-9802784) and DARPA (DAAD-16-99-C1036) for financial support of this work.

  3. Microscopically constrained mean-field models from chiral nuclear thermodynamics

    NASA Astrophysics Data System (ADS)

    Rrapaj, Ermal; Roggero, Alessandro; Holt, Jeremy W.

    2016-06-01

    We explore the use of mean-field models to approximate microscopic nuclear equations of state derived from chiral effective field theory across the densities and temperatures relevant for simulating astrophysical phenomena such as core-collapse supernovae and binary neutron star mergers. We consider both relativistic mean-field theory with scalar and vector meson exchange as well as energy density functionals based on Skyrme phenomenology and compare to thermodynamic equations of state derived from chiral two- and three-nucleon forces in many-body perturbation theory. Quantum Monte Carlo simulations of symmetric nuclear matter and pure neutron matter are used to determine the density regimes in which perturbation theory with chiral nuclear forces is valid. Within the theoretical uncertainties associated with the many-body methods, we find that select mean-field models describe well microscopic nuclear thermodynamics. As an additional consistency requirement, we study as well the single-particle properties of nucleons in a hot/dense environment, which affect e.g., charged-current weak reactions in neutron-rich matter. The identified mean-field models can be used across a larger range of densities and temperatures in astrophysical simulations than more computationally expensive microscopic models.

  4. LISA Optics Model

    NASA Technical Reports Server (NTRS)

    Waluschka, Eugene; Krebs, Carolyn (Technical Monitor)

    2002-01-01

    The LISA experiment has six telescopes, in three spacecraft, in orbit about the sun. There is a continuous laser link between all of the spacecraft. Because of the large, 5 million kilometer distances, between the spacecraft and the need to perform picometer level interferometry and the fact that the optical system is dynamic precludes the use of standard optical codes in the design and analysis of this optical system. A detailed description of the approach used to model all of the optics, in the spacecraft in orbit, is presented and the ability of this model to analyze requirements is discussed. A dynamic computer simulation will be shown to illustrate the laser link and the effects of this dynamic environment on the interferometry.

  5. Programmable Colored Illumination Microscopy (PCIM): A practical and flexible optical staining approach for microscopic contrast enhancement

    NASA Astrophysics Data System (ADS)

    Zuo, Chao; Sun, Jiasong; Feng, Shijie; Hu, Yan; Chen, Qian

    2016-03-01

    Programmable colored illumination microscopy (PCIM) has been proposed as a flexible optical staining technique for microscopic contrast enhancement. In this method, we replace the condenser diaphragm of a conventional microscope with a programmable thin film transistor-liquid crystal display (TFT-LCD). By displaying different patterns on the LCD, numerous established imaging modalities can be realized, such as bright field, dark field, phase contrast, oblique illumination, and Rheinberg illuminations, which conventionally rely on intricate alterations in the respective microscope setups. Furthermore, the ease of modulating both the color and the intensity distribution at the aperture of the condenser opens the possibility to combine multiple microscopic techniques, or even realize completely new methods for optical color contrast staining, such as iridescent dark-field and iridescent phase-contrast imaging. The versatility and effectiveness of PCIM is demonstrated by imaging of several transparent colorless specimens, such as unstained lung cancer cells, diatom, textile fibers, and a cryosection of mouse kidney. Finally, the potentialities of PCIM for RGB-splitting imaging with stained samples are also explored by imaging stained red blood cells and a histological section.

  6. First-order optical analysis of a quasi-microscope for planetary landers

    NASA Technical Reports Server (NTRS)

    Huck, F. O.; Sinclair, A. R.; Burcher, E. E.

    1973-01-01

    A first-order geometrical optics analysis of a facsimile camera augmented with an auxiliary lens as magnifier is presented. This concept, called quasi-microscope, bridges the gap between surface resolutions of the order of 1 to 10 mm which can be obtained directly with planetary lander cameras and resolutions of the order of 0.2 to 10 microns which can be obtained only with relatively complex microscopes. A facsimile camera was considered in the analysis; however, the analytical results can also be applied to television and film cameras. It was found that quasi-microscope resolutions in the range from 10 to 100 microns are obtainable with current state-of-the-art lander facsimile cameras. For the Viking lander camera having an angular resolution of 0.04 deg, which was considered as a specific example, the best achievable resolution would be about 20 microns. The preferred approach to increase the resolution of the quasi-microscope would be, if possible, through an increase in angular resolution of the camera. A twofold to threefold improvement in resolution could also be achieved with a special camera focus position, but this approach tends to require larger and heavier auxiliary optics.

  7. Classification and unification of the microscopic deterministic traffic models.

    PubMed

    Yang, Bo; Monterola, Christopher

    2015-10-01

    We identify a universal mathematical structure in microscopic deterministic traffic models (with identical drivers), and thus we show that all such existing models in the literature, including both the two-phase and three-phase models, can be understood as special cases of a master model by expansion around a set of well-defined ground states. This allows any two traffic models to be properly compared and identified. The three-phase models are characterized by the vanishing of leading orders of expansion within a certain density range, and as an example the popular intelligent driver model is shown to be equivalent to a generalized optimal velocity (OV) model. We also explore the diverse solutions of the generalized OV model that can be important both for understanding human driving behaviors and algorithms for autonomous driverless vehicles. PMID:26565284

  8. Classification and unification of the microscopic deterministic traffic models

    NASA Astrophysics Data System (ADS)

    Yang, Bo; Monterola, Christopher

    2015-10-01

    We identify a universal mathematical structure in microscopic deterministic traffic models (with identical drivers), and thus we show that all such existing models in the literature, including both the two-phase and three-phase models, can be understood as special cases of a master model by expansion around a set of well-defined ground states. This allows any two traffic models to be properly compared and identified. The three-phase models are characterized by the vanishing of leading orders of expansion within a certain density range, and as an example the popular intelligent driver model is shown to be equivalent to a generalized optimal velocity (OV) model. We also explore the diverse solutions of the generalized OV model that can be important both for understanding human driving behaviors and algorithms for autonomous driverless vehicles.

  9. Fractal evaluation of drug amorphicity from optical and scanning electron microscope images

    NASA Astrophysics Data System (ADS)

    Gavriloaia, Bogdan-Mihai G.; Vizireanu, Radu C.; Neamtu, Catalin I.; Gavriloaia, Gheorghe V.

    2013-09-01

    Amorphous materials are metastable, more reactive than the crystalline ones, and have to be evaluated before pharmaceutical compound formulation. Amorphicity is interpreted as a spatial chaos, and patterns of molecular aggregates of dexamethasone, D, were investigated in this paper by using fractal dimension, FD. Images having three magnifications of D were taken from an optical microscope, OM, and with eight magnifications, from a scanning electron microscope, SEM, were analyzed. The average FD for pattern irregularities of OM images was 1.538, and about 1.692 for SEM images. The FDs of the two kinds of images are less sensitive of threshold level. 3D images were shown to illustrate dependence of FD of threshold and magnification level. As a result, optical image of single scale is enough to characterize the drug amorphicity. As a result, the OM image at a single scale is enough to characterize the amorphicity of D.

  10. Construction of a High Resolution Microscope with Conventional and Holographic Optical Trapping Capabilities

    PubMed Central

    Butterfield, Jacqualine; Hong, Weili; Mershon, Leslie; Vershinin, Michael

    2013-01-01

    High resolution microscope systems with optical traps allow for precise manipulation of various refractive objects, such as dielectric beads 1 or cellular organelles 2,3, as well as for high spatial and temporal resolution readout of their position relative to the center of the trap. The system described herein has one such "traditional" trap operating at 980 nm. It additionally provides a second optical trapping system that uses a commercially available holographic package to simultaneously create and manipulate complex trapping patterns in the field of view of the microscope 4,5 at a wavelength of 1,064 nm. The combination of the two systems allows for the manipulation of multiple refractive objects at the same time while simultaneously conducting high speed and high resolution measurements of motion and force production at nanometer and piconewton scale. PMID:23629580

  11. Optical analysis of a compound quasi-microscope for planetary landers

    NASA Technical Reports Server (NTRS)

    Wall, S. D.; Burcher, E. E.; Huck, F. O.

    1974-01-01

    A quasi-microscope concept, consisting of facsimile camera augmented with an auxiliary lens as a magnifier, was introduced and analyzed. The performance achievable with this concept was primarily limited by a trade-off between resolution and object field; this approach leads to a limiting resolution of 20 microns when used with the Viking lander camera (which has an angular resolution of 0.04 deg). An optical system is analyzed which includes a field lens between camera and auxiliary lens to overcome this limitation. It is found that this system, referred to as a compound quasi-microscope, can provide improved resolution (to about 2 microns ) and a larger object field. However, this improvement is at the expense of increased complexity, special camera design requirements, and tighter tolerances on the distances between optical components.

  12. Fission barriers in a macroscopic-microscopic model

    SciTech Connect

    Dobrowolski, A.; Pomorski, K.; Bartel, J.

    2007-02-15

    In the framework of the macroscopic-microscopic model, this study investigates fission barriers in the region of actinide nuclei. A very effective four-dimensional shape parametrization for fissioning nuclei is proposed. Taking, in particular, the left-right mass asymmetric and nonaxial shapes into account is demonstrated to have a substantial effect on fission barrier heights. The influence of proton versus neutron deformation differences on the potential energy landscape of fissioning nuclei is also discussed.

  13. Full-field transmission-type angle-deviation optical microscope with reflectivity-height transformation

    PubMed Central

    Chiu, Ming-Hung; Tan, Chen-Tai; Tsai, Ming-Hung; Yang, Ya-Hsin

    2015-01-01

    This full-field transmission-type three-dimensional (3D) optical microscope is constructed based on the angle deviation method (ADM) and the algorithm of reflectivity-height transformation (RHT). The surface height is proportional to the deviation angle of light passing through the object. The angle deviation and surface height can be measured based on the reflectivity closed to the critical angle using a parallelogram prism and two CCDs. PMID:26504645

  14. Single DNA molecule grafting and manipulation using a combined atomic force microscope and an optical tweezer

    NASA Astrophysics Data System (ADS)

    Shivashankar, G. V.; Libchaber, A.

    1997-12-01

    In this letter, we report on spatially selecting and grafting a DNA-tethered bead to an atomic force microscope (AFM) cantilever, using an optical tweezer. To quantify this technique, we measure force versus extension of a single DNA molecule using AFM. For such studies, we have developed a micromanipulation approach by combining an AFM, an optical tweezer, and visualization setup. The ability to select a single DNA polymer and specifically graft it to a localized position on a substrate opens up new possibilities in biosensors and bioelectronic devices.

  15. Optical sectioning microscopes with no moving parts using a micro-stripe array light emitting diode.

    PubMed

    Poher, V; Zhang, H X; Kennedy, G T; Griffin, C; Oddos, S; Gu, E; Elson, D S; Girkin, M; French, P M W; Dawson, M D; Neil, M A

    2007-09-01

    We describe an optical sectioning microscopy system with no moving parts based on a micro-structured stripe-array light emitting diode (LED). By projecting arbitrary line or grid patterns onto the object, we are able to implement a variety of optical sectioning microscopy techniques such as grid-projection structured illumination and line scanning confocal microscopy, switching from one imaging technique to another without modifying the microscope setup. The micro-structured LED and driver are detailed and depth discrimination capabilities are measured and calculated. PMID:19547474

  16. Optical beam deflection noncontact atomic force microscope optimized with three-dimensional beam adjustment mechanism

    NASA Astrophysics Data System (ADS)

    Yokoyama, Kousuke; Ochi, Taketoshi; Uchihashi, Takayuki; Ashino, Makoto; Sugawara, Yasuhiro; Suehira, Nobuhito; Morita, Seizo

    2000-01-01

    We present a design and performance of an optical beam deflection noncontact atomic force microscope (nc-AFM). The optical deflection detection system can be optimized by the three-dimensional beam position adjustment mechanism (the slider which mounts laser diode module, the spherical rotors with mirror and the cylinder which mounts quadrant photodiode) using inertial stepping motors in an ultrahigh vacuum (UHV). The samples and cantilevers are easily exchanged in UHV. The performance of the instrument is demonstrated with the atomically resolved nc-AFM images for various surfaces such as Si(111)7×7, Cu(111), TiO2(110), and thymine/highly oriented pyrolytic graphite.

  17. Cancer cell imaging by stable wet near-field scanning optical microscope with resonance tracking method

    NASA Astrophysics Data System (ADS)

    Park, Kyoung-Duck; Park, Doo Jae; Jeong, Mun Seok; Choi, Geun Chang; Lee, Seung Gol; Byeon, Clare Chisu; Choi, Soo Bong

    2014-05-01

    We report on a successful topographical and optical imaging of various cancer cells in liquid and in air by using a stable wet near-field scanning optical microscope that utilizes a resonance tracking method. We observed a clear dehydration which gives rise to a decrease in the cell volume down to 51%. In addition, a micro-ball lens effect due to the round-shaped young cancer cells was observed from near-field imaging, where the refractive index of young cancer cells was deduced.

  18. Fabrication of optical multilayer for two-color phase plate in super-resolution microscope

    NASA Astrophysics Data System (ADS)

    Iketaki, Yoshinori; Kitagawa, Katsuichi; Hidaka, Kohjiro; Kato, Naoki; Hirabayashi, Akira; Bokor, Nandor

    2014-07-01

    In super-resolution microscopy based on fluorescence depletion, the two-color phase plate (TPP) is an indispensable optical element, which can independently control the phase shifts for two beams of different color, i.e., the pump and erase beams. By controlling a phase shift of the erase beam through the TPP, the erase beam can be modulated into a doughnut shape, while the pump beam maintains the initial Gaussian shape. To obtain a reliable optical multiplayer (ML) for the TPP, we designed a ML with only two optical layers by performing numerical optimization. The measured phase shifts generated by the fabricated ML using interferometry correspond to the design values. The beam profiles in the focal plane are also consistent with theoretical results. Although the fabricated ML consists of only two optical layers, the ML can provide a suitable phase modulation function for the TPP in a practical super-resolution microscope.

  19. Fabrication of optical multilayer for two-color phase plate in super-resolution microscope

    SciTech Connect

    Iketaki, Yoshinori; Kitagawa, Katsuichi; Hidaka, Kohjiro; Kato, Naoki; Hirabayashi, Akira; Bokor, Nandor

    2014-07-15

    In super-resolution microscopy based on fluorescence depletion, the two-color phase plate (TPP) is an indispensable optical element, which can independently control the phase shifts for two beams of different color, i.e., the pump and erase beams. By controlling a phase shift of the erase beam through the TPP, the erase beam can be modulated into a doughnut shape, while the pump beam maintains the initial Gaussian shape. To obtain a reliable optical multiplayer (ML) for the TPP, we designed a ML with only two optical layers by performing numerical optimization. The measured phase shifts generated by the fabricated ML using interferometry correspond to the design values. The beam profiles in the focal plane are also consistent with theoretical results. Although the fabricated ML consists of only two optical layers, the ML can provide a suitable phase modulation function for the TPP in a practical super-resolution microscope.

  20. Modelling and Simulation of the Space Mission MICROSCOPE

    NASA Astrophysics Data System (ADS)

    Bremer, Stefanie; List, M.; Selig, H.; Lämmerzahl, C.

    2009-05-01

    The French space mission MICROSCOPE aims at testing the Equivalence Principle (EP) with an accuracy of 10e-15. The payload, which is developed and built by the French institute ONERA consists of two high-precision capacitive differential accelerometers. The detection of the test mass movement and their control is done via a complex electrode system. The German department ZARM is member of the MICROSCOPE performance team. In addition to drop tower tests, mission simulations and the preperation of the mission data evaluation are realised in close cooperation with the French partners CNES, ONERA and OCA. Therefore a comprehensive simulation of the real system including the science signal and all error sources is built for the development and testing of data reduction and data analysis algorithms to extract the EP violation signal. In this context the focus lays on the correct modelling of the environmental disturbances. Currently new effort to study the influence of the solar radiation and the Earth albedo to the MICROSCOPE mission scenario is underway. The actual status of the mission modelling will be presented.

  1. Analysis of proton scattering of stable and exotic light nuclei using an energy-dependent microscopic optical potential

    NASA Astrophysics Data System (ADS)

    Maridi, H. M.; Farag, M. Y. H.; Esmael, E. H.

    2016-01-01

    The proton elastic scattering off the 9,10,11,12Be isotopes at a wide energy range from 3 to 200 MeV/nucleon is analyzed using the optical model with the partial-wave expansion method. The microscopic optical potential (OP) is taken within the single-folding model. The density- and isospin-dependent M3YParis nucleon-nucleon (NN) interaction is used for the real part and the NN-scattering amplitude of the highenergy approximation for the imaginary one. The cross-section data are reproduced well at energies up to 100 MeV/nucleon by use of the partial-wave expansion. For higher energies, the eikonal approximation is successfully used. The volume integrals of the OP parts have systematic energy dependencies and they can be parameterized as functions of energy. From these parametrization, an energy-dependent OP can be obtained.

  2. Multifocal fluorescence microscope for fast optical recordings of neuronal action potentials.

    PubMed

    Shtrahman, Matthew; Aharoni, Daniel B; Hardy, Nicholas F; Buonomano, Dean V; Arisaka, Katsushi; Otis, Thomas S

    2015-02-01

    In recent years, optical sensors for tracking neural activity have been developed and offer great utility. However, developing microscopy techniques that have several kHz bandwidth necessary to reliably capture optically reported action potentials (APs) at multiple locations in parallel remains a significant challenge. To our knowledge, we describe a novel microscope optimized to measure spatially distributed optical signals with submillisecond and near diffraction-limit resolution. Our design uses a spatial light modulator to generate patterned illumination to simultaneously excite multiple user-defined targets. A galvanometer driven mirror in the emission path streaks the fluorescence emanating from each excitation point during the camera exposure, using unused camera pixels to capture time varying fluorescence at rates that are ∼1000 times faster than the camera's native frame rate. We demonstrate that this approach is capable of recording Ca(2+) transients resulting from APs in neurons labeled with the Ca(2+) sensor Oregon Green Bapta-1 (OGB-1), and can localize the timing of these events with millisecond resolution. Furthermore, optically reported APs can be detected with the voltage sensitive dye DiO-DPA in multiple locations within a neuron with a signal/noise ratio up to ∼40, resolving delays in arrival time along dendrites. Thus, the microscope provides a powerful tool for photometric measurements of dynamics requiring submillisecond sampling at multiple locations. PMID:25650920

  3. Multifocal Fluorescence Microscope for Fast Optical Recordings of Neuronal Action Potentials

    PubMed Central

    Shtrahman, Matthew; Aharoni, Daniel B.; Hardy, Nicholas F.; Buonomano, Dean V.; Arisaka, Katsushi; Otis, Thomas S.

    2015-01-01

    In recent years, optical sensors for tracking neural activity have been developed and offer great utility. However, developing microscopy techniques that have several kHz bandwidth necessary to reliably capture optically reported action potentials (APs) at multiple locations in parallel remains a significant challenge. To our knowledge, we describe a novel microscope optimized to measure spatially distributed optical signals with submillisecond and near diffraction-limit resolution. Our design uses a spatial light modulator to generate patterned illumination to simultaneously excite multiple user-defined targets. A galvanometer driven mirror in the emission path streaks the fluorescence emanating from each excitation point during the camera exposure, using unused camera pixels to capture time varying fluorescence at rates that are ∼1000 times faster than the camera’s native frame rate. We demonstrate that this approach is capable of recording Ca2+ transients resulting from APs in neurons labeled with the Ca2+ sensor Oregon Green Bapta-1 (OGB-1), and can localize the timing of these events with millisecond resolution. Furthermore, optically reported APs can be detected with the voltage sensitive dye DiO-DPA in multiple locations within a neuron with a signal/noise ratio up to ∼40, resolving delays in arrival time along dendrites. Thus, the microscope provides a powerful tool for photometric measurements of dynamics requiring submillisecond sampling at multiple locations. PMID:25650920

  4. Modelling and simulation of the space mission MICROSCOPE

    NASA Astrophysics Data System (ADS)

    Bremer, Stefanie; List, Meike; Selig, Hanns; Lämmerzahl, Claus

    2010-01-01

    The French space mission MICROSCOPE aims at testing the weak Equivalence Principle (EP) with an accuracy of 10-15. The payload, which is developed and built by the French institute ONERA consists of two high-precision capacitive differential accelerometers. The detection of the test mass movement and their control is done via a complex electrode system. The German department ZARM is member of the MICROSCOPE performance team. In addition to drop tower tests, mission simulations and the preparation of the mission data evaluation are realized in close cooperation with the French partners CNES, ONERA and OCA. Therefore a comprehensive simulation of the real system including the science signal and all error sources is built for the development and testing of data reduction and data analysis algorithms to extract the EP violation signal. In this context the focus lays on the correct modeling of the environmental disturbances. Currently new effort to study the influence of the solar radiation and the Earth albedo to the MICROSCOPE mission scenario is underway.

  5. Ultra-high resolution water window x ray microscope optics design and analysis

    NASA Technical Reports Server (NTRS)

    Shealy, David L.; Wang, C.

    1993-01-01

    This project has been focused on the design and analysis of an ultra-high resolution water window soft-x-ray microscope. These activities have been accomplished by completing two tasks contained in the statement of work of this contract. The new results from this work confirm: (1) that in order to achieve resolutions greater than three times the wavelength of the incident radiation, it will be necessary to use spherical mirror surfaces and to use graded multilayer coatings on the secondary in order to accommodate the large variations of the angle of incidence over the secondary when operating the microscope at numerical apertures of 0.35 or greater; (2) that surface contour errors will have a significant effect on the optical performance of the microscope and must be controlled to a peak-to-valley variation of 50-100 A and a frequency of 8 periods over the surface of a mirror; and (3) that tolerance analysis of the spherical Schwarzschild microscope has been shown that the water window operations will require 2-3 times tighter tolerances to achieve a similar performance of operations with 130 A radiation. These results have been included in a manuscript included in the appendix.

  6. Dual-mode optical microscope based on single-pixel imaging

    NASA Astrophysics Data System (ADS)

    Rodríguez, A. D.; Clemente, P.; Tajahuerce, E.; Lancis, J.

    2016-07-01

    We demonstrate an inverted microscope that can image specimens in both reflection and transmission modes simultaneously with a single light source. The microscope utilizes a digital micromirror device (DMD) for patterned illumination altogether with two single-pixel photosensors for efficient light detection. The system, a scan-less device with no moving parts, works by sequential projection of a set of binary intensity patterns onto the sample that are codified onto a modified commercial DMD. Data to be displayed are geometrically transformed before written into a memory cell to cancel optical artifacts coming from the diamond-like shaped structure of the micromirror array. The 24-bit color depth of the display is fully exploited to increase the frame rate by a factor of 24, which makes the technique practicable for real samples. Our commercial DMD-based LED-illumination is cost effective and can be easily coupled as an add-on module for already existing inverted microscopes. The reflection and transmission information provided by our dual microscope complement each other and can be useful for imaging non-uniform samples and to prevent self-shadowing effects.

  7. Wide-band acousto-optic deflectors for large field of view two-photon microscope.

    PubMed

    Jiang, Runhua; Zhou, Zhenqiao; Lv, Xiaohua; Zeng, Shaoqun

    2012-04-01

    Acousto-optic deflector (AOD) is an attractive scanner for two-photon microscopy because it can provide fast and versatile laser scanning and does not involve any mechanical movements. However, due to the small scan range of available AOD, the field of view (FOV) of the AOD-based microscope is typically smaller than that of the conventional galvanometer-based microscope. Here, we developed a novel wide-band AOD to enlarge the scan angle. Considering the maximum acceptable acoustic attenuation in the acousto-optic crystal, relatively lower operating frequencies and moderate aperture were adopted. The custom AOD was able to provide 60 MHz 3-dB bandwidth and 80% peak diffraction efficiency at 840 nm wavelength. Based on a pair of such AOD, a large FOV two-photon microscope was built with a FOV up to 418.5 μm (40× objective). The spatiotemporal dispersion was compensated simultaneously with a single custom-made prism. By means of dynamic power modulation, the variation of laser intensity within the FOV was reduced below 5%. The lateral and axial resolution of the system were 0.58-2.12 μm and 2.17-3.07 μm, respectively. Pollen grain images acquired by this system were presented to demonstrate the imaging capability at different positions across the entire FOV. PMID:22559541

  8. Field programmable gate array based reconfigurable scanning probe/optical microscope.

    PubMed

    Nowak, Derek B; Lawrence, A J; Dzegede, Zechariah K; Hiester, Justin C; Kim, Cliff; Sánchez, Erik J

    2011-10-01

    The increasing popularity of nanometrology and nanospectroscopy has pushed researchers to develop complex new analytical systems. This paper describes the development of a platform on which to build a microscopy tool that will allow for flexibility of customization to suit research needs. The novelty of the described system lies in its versatility of capabilities. So far, one version of this microscope has allowed for successful near-field and far-field fluorescence imaging with single molecule detection sensitivity. This system is easily adapted for reflection, polarization (Kerr magneto-optical (MO)), Raman, super-resolution techniques, and other novel scanning probe imaging and spectroscopic designs. While collecting a variety of forms of optical images, the system can simultaneously monitor topographic information of a sample with an integrated tuning fork based shear force system. The instrument has the ability to image at room temperature and atmospheric pressure or under liquid. The core of the design is a field programmable gate array (FPGA) data acquisition card and a single, low cost computer to control the microscope with analog control circuitry using off-the-shelf available components. A detailed description of electronics, mechanical requirements, and software algorithms as well as examples of some different forms of the microscope developed so far are discussed. PMID:22047297

  9. Spectroscopy of single emitters using a scanning optical microscope in a dilution refrigerator

    NASA Astrophysics Data System (ADS)

    Ghosh, Saikat; Heikes, Colin; Wise, Frank; Gaeta, Alexander; Ralph, Dan

    2010-03-01

    We report the design and implementation of a fiber-based optical scanning microscope, capable of operating at temperatures down to 20 mK and in magnetic fields in excess of 9 Tesla, with sub-micron spatial resolution and ultra-low light levels. A home-made modular, piezo-based scanning head is at the heart of the design, with optical fibers coupling light in and out of a commercial dilution refrigerator. The microscope can be operated both in transmission and reflection modes. In the transmission mode, we can analyze the polarization of the light transmitted through the sample down to femto-Watt light levels, using detectors and polarizers integrated with the scanning head inside the refrigerator. In the reflection mode, the instrument can be operated in a confocal geometry in conjunction with single photon counting modules to measure anti-bunching and the decay times of fluorescent photons. We are using this microscope to study individual nano- emitters, focusing initially on spin dynamics in semiconductor quantum dots.

  10. Field programmable gate array based reconfigurable scanning probe/optical microscope

    NASA Astrophysics Data System (ADS)

    Nowak, Derek B.; Lawrence, A. J.; Dzegede, Zechariah K.; Hiester, Justin C.; Kim, Cliff; Sánchez, Erik J.

    2011-10-01

    The increasing popularity of nanometrology and nanospectroscopy has pushed researchers to develop complex new analytical systems. This paper describes the development of a platform on which to build a microscopy tool that will allow for flexibility of customization to suit research needs. The novelty of the described system lies in its versatility of capabilities. So far, one version of this microscope has allowed for successful near-field and far-field fluorescence imaging with single molecule detection sensitivity. This system is easily adapted for reflection, polarization (Kerr magneto-optical (MO)), Raman, super-resolution techniques, and other novel scanning probe imaging and spectroscopic designs. While collecting a variety of forms of optical images, the system can simultaneously monitor topographic information of a sample with an integrated tuning fork based shear force system. The instrument has the ability to image at room temperature and atmospheric pressure or under liquid. The core of the design is a field programmable gate array (FPGA) data acquisition card and a single, low cost computer to control the microscope with analog control circuitry using off-the-shelf available components. A detailed description of electronics, mechanical requirements, and software algorithms as well as examples of some different forms of the microscope developed so far are discussed.

  11. Scanning tunneling microscope based nanoscale optical imaging of molecules on surfaces

    NASA Astrophysics Data System (ADS)

    Zhang, Chao; Chen, Liuguo; Zhang, Rui; Dong, Zhenchao

    2015-08-01

    We provide an overview of the development of a merged system of low-temperature ultrahigh-vacuum scanning tunneling microscope (STM) with photon collection and detection units for optical imaging at the nanoscale. Focusing on our own work over the past ten years, the paper starts from a brief introduction of the STM induced luminescence (STML) technique and the challenge for nanoscale optical imaging, and then describes the design and instrumentation on the photon collection and detection system. The powerful potentials of the technique are illustrated using several selected examples from STML to tip enhanced Raman scattering that are mainly related to photon mapping. Such photon maps could reveal not only the local electromagnetic properties and the nature of optical transitions in the junction, but also exhibit spatial imaging resolution down to sub-molecular and sub-nanometer scale. The paper is concluded with a brief overlook on the future development of the STML technique.

  12. Thermal lens microscope sensitivity enhancement using a passive Fabry–Perot-type optical cavity

    NASA Astrophysics Data System (ADS)

    Cabrera, H.; Cedeño, E.; Grima, P.; Marín, E.; Calderón, A.; Delgado, O.

    2016-05-01

    We developed a thermal lens microscope equipped with a passive optical cavity, which provides an optical feedback for the multiple pass of the probe laser beam to enhance sensitivity. Considering the maximum absorption peak for Fe(II) at 532 nm wavelength, we have achieved a 6.6-fold decrease in the limit of detection (LOD) to a level of 0.077 μg · l‑1 without a cavity. The possibilities to use thermal lens detection combined with an optical resonator was proposed and a drastic thermal lens signal enhancement was achieved using very low excitation power. The corresponding LOD for Fe(II) was further decreased to the level of 0.006 μg · l‑1 which represents an 85-fold decrease of the LOD value. This setup is a promising device, which can be applied as a sensitive tool for detecting chemical traces in small volumes of solutions.

  13. Connections between the dynamical symmetries in the microscopic shell model

    NASA Astrophysics Data System (ADS)

    Georgieva, A. I.; Drumev, K. P.

    2016-03-01

    The dynamical symmetries of the microscopic shell model appear as the limiting cases of a symmetry adapted Pairing-Plus-Quadrupole Model /PQM/, with a Hamiltonian containing isoscalar and isovector pairing and quadrupole interactions. We establish a correspondence between each of the three types of pairing bases and Elliott's SU(3) basis, that describes collective rotation of nuclear systems with quadrupole deformation. It is derived from their complementarity to the same LS coupling chain of the shell model number conserving algebra. The probability distribution of the S U(3) basis states within the pairing eigenstates is also obtained through a numerical diagonalization of the PQM Hamiltonian in each limit. We introduce control parameters, which define the phase diagram of the model and determine the role of each term of the Hamiltonian in the correct reproduction of the experimental data for the considered nuclei.

  14. Microscope-integrated optical coherence tomography for image-aided positioning of glaucoma surgery

    NASA Astrophysics Data System (ADS)

    Li, Xiqi; Wei, Ling; Dong, Xuechuan; Huang, Ping; Zhang, Chun; He, Yi; Shi, Guohua; Zhang, Yudong

    2015-07-01

    Most glaucoma surgeries involve creating new aqueous outflow pathways with the use of a small surgical instrument. This article reported a microscope-integrated, real-time, high-speed, swept-source optical coherence tomography system (SS-OCT) with a 1310-nm light source for glaucoma surgery. A special mechanism was designed to produce an adjustable system suitable for use in surgery. A two-graphic processing unit architecture was used to speed up the data processing and real-time volumetric rendering. The position of the surgical instrument can be monitored and measured using the microscope and a grid-inserted image of the SS-OCT. Finally, experiments were simulated to assess the effectiveness of this integrated system. Experimental results show that this system is a suitable positioning tool for glaucoma surgery.

  15. Microscope-integrated optical coherence tomography for image-aided positioning of glaucoma surgery.

    PubMed

    Li, Xiqi; Wei, Ling; Dong, Xuechuan; Huang, Ping; Zhang, Chun; He, Yi; Shi, Guohua; Zhang, Yudong

    2015-07-01

    Most glaucoma surgeries involve creating new aqueous outflow pathways with the use of a small surgical instrument. This article reported a microscope-integrated, real-time, high-speed, swept-source optical coherence tomography system (SS-OCT) with a 1310-nm light source for glaucoma surgery. A special mechanism was designed to produce an adjustable system suitable for use in surgery. A two-graphic processing unit architecture was used to speed up the data processing and real-time volumetric rendering. The position of the surgical instrument can be monitored and measured using the microscope and a grid-inserted image of the SS-OCT. Finally, experiments were simulated to assess the effectiveness of this integrated system. Experimental results show that this system is a suitable positioning tool for glaucoma surgery. PMID:26160346

  16. Inspection of commercial optical devices for data storage using a three Gaussian beam microscope interferometer

    SciTech Connect

    Flores, J. Mauricio; Cywiak, Moises; Servin, Manuel; Juarez P, Lorenzo

    2008-09-20

    Recently, an interferometric profilometer based on the heterodyning of three Gaussian beams has been reported. This microscope interferometer, called a three Gaussian beam interferometer, has been used to profile high quality optical surfaces that exhibit constant reflectivity with high vertical resolution and lateral resolution near {lambda}. We report the use of this interferometer to measure the profiles of two commercially available optical surfaces for data storage, namely, the compact disk (CD-R) and the digital versatile disk (DVD-R). We include experimental results from a one-dimensional radial scan of these devices without data marks. The measurements are taken by placing the devices with the polycarbonate surface facing the probe beam of the interferometer. This microscope interferometer is unique when compared with other optical measuring instruments because it uses narrowband detection, filters out undesirable noisy signals, and because the amplitude of the output voltage signal is basically proportional to the local vertical height of the surface under test, thus detecting with high sensitivity. We show that the resulting profiles, measured with this interferometer across the polycarbonate layer, provide valuable information about the track profiles, making this interferometer a suitable tool for quality control of surface storage devices.

  17. Real-time restoration of white-light confocal microscope optical sections

    PubMed Central

    Balasubramanian, Madhusudhanan; Iyengar, S. Sitharama; Beuerman, Roger W.; Reynaud, Juan; Wolenski, Peter

    2009-01-01

    Confocal microscopes (CM) are routinely used for building 3-D images of microscopic structures. Nonideal imaging conditions in a white-light CM introduce additive noise and blur. The optical section images need to be restored prior to quantitative analysis. We present an adaptive noise filtering technique using Karhunen–Loéve expansion (KLE) by the method of snapshots and a ringing metric to quantify the ringing artifacts introduced in the images restored at various iterations of iterative Lucy–Richardson deconvolution algorithm. The KLE provides a set of basis functions that comprise the optimal linear basis for an ensemble of empirical observations. We show that most of the noise in the scene can be removed by reconstructing the images using the KLE basis vector with the largest eigenvalue. The prefiltering scheme presented is faster and does not require prior knowledge about image noise. Optical sections processed using the KLE prefilter can be restored using a simple inverse restoration algorithm; thus, the methodology is suitable for real-time image restoration applications. The KLE image prefilter outperforms the temporal-average prefilter in restoring CM optical sections. The ringing metric developed uses simple binary morphological operations to quantify the ringing artifacts and confirms with the visual observation of ringing artifacts in the restored images. PMID:20186290

  18. A Microscopic Quantal Model for Nuclear Collective Rotation

    SciTech Connect

    Gulshani, P.

    2007-10-26

    A microscopic, quantal model to describe nuclear collective rotation in two dimensions is derived from the many-nucleon Schrodinger equation. The Schrodinger equation is transformed to a body-fixed frame to decompose the Hamiltonian into a sum of intrinsic and rotational components plus a Coriolis-centrifugal coupling term. This Hamiltonian (H) is expressed in terms of space-fixed-frame particle coordinates and momenta by using commutator of H with a rotation angle. A unified-rotational-model type wavefunction is used to obtain an intrinsic Schrodinger equation in terms of angular momentum quantum number and two-body operators. A Hartree-Fock mean-field representation of this equation is then obtained and, by means of a unitary transformation, is reduced to a form resembling that of the conventional semi-classical cranking model when exchange terms and intrinsic spurious collective excitation are ignored.

  19. Microscopic modeling of multi-lane highway traffic flow

    NASA Astrophysics Data System (ADS)

    Hodas, Nathan O.; Jagota, Anand

    2003-12-01

    We discuss a microscopic model for the study of multi-lane highway traffic flow dynamics. Each car experiences a force resulting from a combination of the desire of the driver to attain a certain velocity, aerodynamic drag, and change of the force due to car-car interactions. The model also includes multi-lane simulation capability and the ability to add and remove obstructions. We implement the model via a Java applet, which is used to simulate traffic jam formation, the effect of bottlenecks on traffic flow, and the existence of light, medium, and heavy traffic flow. The simulations also provide insight into how the properties of individual cars result in macroscopic behavior. Because the investigation of emergent characteristics is so common in physics, the study of traffic in this manner sheds new light on how the micro-to-macro transition works in general.

  20. A Microscopic Multiphase Diffusion Model of Viable Epidermis Permeability

    PubMed Central

    Nitsche, Johannes M.; Kasting, Gerald B.

    2013-01-01

    A microscopic model of passive transverse mass transport of small solutes in the viable epidermal layer of human skin is formulated on the basis of a hexagonal array of cells (i.e., keratinocytes) bounded by 4-nm-thick, anisotropic lipid bilayers and separated by 1-μm layers of extracellular fluid. Gap junctions and tight junctions with adjustable permeabilities are included to modulate the transport of solutes with low membrane permeabilities. Two keratinocyte aspect ratios are considered to represent basal and spinous cells (longer) and granular cells (more flattened). The diffusion problem is solved in a unit cell using a coordinate system conforming to the hexagonal cross section, and an efficient two-dimensional treatment is applied to describe transport in both the cell membranes and intercellular spaces, given their thinness. Results are presented in terms of an effective diffusion coefficient, D¯epi, and partition coefficient, K¯epi/w, for a homogenized representation of the microtransport problem. Representative calculations are carried out for three small solutes—water, L-glucose, and hydrocortisone—covering a wide range of membrane permeability. The effective transport parameters and their microscopic interpretation can be employed within the context of existing three-layer models of skin transport to provide more realistic estimates of the epidermal concentrations of topically applied solutes. PMID:23708370

  1. Electron microscopic and optical studies of prism faces of synthetic quartz

    NASA Technical Reports Server (NTRS)

    Buzek, B. C.; Vagh, A. S.

    1977-01-01

    Application of electron and optical microscopic techniques to the study of growth spirals on quartz crystal faces is described. Attention is centered on the centers of the spirals and on screw ledges; overhanging kinks are revealed on one side of the spiral centers. The possibility that these special features may have developed after growth of the crystals went to completion is explored. The conjecture is raised that such structures might result from adsorption of growth-inhibiting impurities at the center of the growth spiral on the quartz habit faces.

  2. Binary pseudorandom test standard to determine the modulation transfer function of optical microscopes

    NASA Astrophysics Data System (ADS)

    Lacey, Ian; Anderson, Erik H.; Artemiev, Nikolay A.; Babin, Sergey; Cabrini, Stefano; Calafiore, Guiseppe; Chan, Elaine R.; McKinney, Wayne R.; Peroz, Christophe; Takacs, Peter Z.; Yashchuk, Valeriy V.

    2015-09-01

    This work reports on the development of a binary pseudo-random test sample optimized to calibrate the MTF of optical microscopes. The sample consists of a number of 1-D and 2-D patterns, with different minimum sizes of spatial artifacts from 300 nm to 2 microns. We describe the mathematical background, fabrication process, data acquisition and analysis procedure to return spatial frequency based instrument calibration. We show that the developed samples satisfy the characteristics of a test standard: functionality, ease of specification and fabrication, reproducibility, and low sensitivity to manufacturing error.

  3. A confocal optical microscope for detection of single impurities in a bulk crystal at cryogenic temperatures.

    PubMed

    Karlsson, Jenny; Rippe, Lars; Kröll, Stefan

    2016-03-01

    A compact sample-scanning confocal optical microscope for detection of single impurities below the surface of a bulk crystal at cryogenic temperatures is described. The sample, lens, and scanners are mounted inside a helium bath cryostat and have a footprint of only 19 × 19 mm. Wide field imaging and confocal imaging using a Blu-ray lens immersed in liquid helium are demonstrated with excitation at 370 nm. A spatial resolution of 300 nm and a detection efficiency of 1.6% were achieved. PMID:27036778

  4. Photopolymerized microscopic vortex beam generators: Precise delivery of optical orbital angular momentum

    NASA Astrophysics Data System (ADS)

    Brasselet, Etienne; Malinauskas, Mangirdas; Žukauskas, Albertas; Juodkazis, Saulius

    2010-11-01

    Direct femtosecond laser photopolymerization is used to fabricate high resolution microscopic spiral phase plates. The total phase change all around their center is prepared to be a integer multiple of 2π for the operating wavelength in the visible domain. The optical performances of the spiral plates are measured and we propose a simple single beam interferometric technique to characterize the phase singularity of the generated vortex beams. The experimental results are compared to simulations and a satisfying agreement is obtained. Potential of large scale fabrication, templating, and smart spiral plate architectures are also illustrated.

  5. Submicrometer infrared surface imaging using a scanning-probe microscope and an optical parametric oscillator laser.

    PubMed

    Hill, Graeme A; Rice, James H; Meech, Stephen R; Craig, Duncan Q M; Kuo, Paulina; Vodopyanov, Konstantin; Reading, Michael

    2009-02-15

    Submicrometer IR surface imaging was performed with a resolution better than the diffraction limit. The apparatus was based on an IR optical parametric oscillator laser and a commercial atomic force microscope and used, as the detection mechanism, induced resonant oscillations in an atomic force microscopy (AFM) cantilever. For the first time to our knowledge this was achieved with top-down illumination and a benchtop IR source, thus extending the range of potential applications of this technique. IR absorption and AFM topography images of polystyrene beads were recorded simultaneously with an image resolution of 200 nm. PMID:19373331

  6. A confocal optical microscope for detection of single impurities in a bulk crystal at cryogenic temperatures

    NASA Astrophysics Data System (ADS)

    Karlsson, Jenny; Rippe, Lars; Kröll, Stefan

    2016-03-01

    A compact sample-scanning confocal optical microscope for detection of single impurities below the surface of a bulk crystal at cryogenic temperatures is described. The sample, lens, and scanners are mounted inside a helium bath cryostat and have a footprint of only 19 × 19 mm. Wide field imaging and confocal imaging using a Blu-ray lens immersed in liquid helium are demonstrated with excitation at 370 nm. A spatial resolution of 300 nm and a detection efficiency of 1.6% were achieved.

  7. Simultaneous measurement of normal and friction forces using a cantilever-based optical interfacial force microscope

    NASA Astrophysics Data System (ADS)

    Kim, Byung I.; Bonander, Jeremy R.; Rasmussen, Jared A.

    2011-05-01

    We measured normal and friction forces simultaneously using a recently developed cantilever-based optical interfacial force microscope technique for studies of interfacial structures and mechanical properties of nanoscale materials. We derived how the forces can be incorporated into the detection signal using the classical Euler equation for beams. A lateral modulation with the amplitude of nanometers was applied to create the friction forces between tip and sample. We demonstrated its capability by measuring normal and friction forces of interfacial water at the molecular scale over all distance ranges.

  8. Simultaneous measurement of normal and friction forces using a cantilever-based optical interfacial force microscope.

    PubMed

    Kim, Byung I; Bonander, Jeremy R; Rasmussen, Jared A

    2011-05-01

    We measured normal and friction forces simultaneously using a recently developed cantilever-based optical interfacial force microscope technique for studies of interfacial structures and mechanical properties of nanoscale materials. We derived how the forces can be incorporated into the detection signal using the classical Euler equation for beams. A lateral modulation with the amplitude of nanometers was applied to create the friction forces between tip and sample. We demonstrated its capability by measuring normal and friction forces of interfacial water at the molecular scale over all distance ranges. PMID:21639511

  9. Enhanced microscopic nonlinear optical properties of novel Y-type chromophores with dual electron donor groups

    NASA Astrophysics Data System (ADS)

    Tang, Xiang; Pan, Lin; Jia, Kun; Tang, Xianzhong

    2016-03-01

    In this Letter, novel Y-type chromophores with dual electron donor groups, containing either styryl or azobenzene based π-conjugated bridge structures, were synthesized and their chemical structures, molecular configuration, microscopic optical properties as well as thermal properties were systematically characterized. The experimental results indicated that eight times increasing of second-order molecular hyperpolarizability as well as 50-100 nm blue shift of maximum absorption band for azobenzene based chromophore were observed by introducing Y-type dual electron donor groups, which was derived from the highly efficient 'total charge transfer' in this kind of chromophore as confirmed by the density functional theory calculation.

  10. Detection and diagnosis of oral neoplasia with an optical coherence microscope

    PubMed Central

    Clark, A. L.; Gillenwater, A.; Alizadeh-Naderi, R.; El-Naggar, A. K.; Richards-Kortum, R.

    2009-01-01

    The use of high resolution, in vivo optical imaging may offer a clinically useful adjunct to standard histopathologic techniques. A pilot study was performed to investigate the diagnostic capabilities of optical coherence microscopy (OCM) to discriminate between normal and abnormal oral tissue. Our objective is to determine whether OCM, a technique combining the subcellular resolution of confocal microscopy with the coherence gating and heterodyne detection of optical coherence tomography, has the same ability as confocal microscopy to detect morphological changes present in precancers of the epithelium while providing superior penetration depths. We report our results using OCM to characterize the features of normal and neoplastic oral mucosa excised from 13 subjects. Specifically, we use optical coherence and confocal microscopic images obtained from human oral biopsy specimens at various depths from the mucosal surface to examine the optical properties that distinguish normal and neoplastic oral mucosa. An analysis of penetration depths achieved by the OCM and its associated confocal arm found that the OCM consistently imaged more deeply. Extraction of scattering coefficients from reflected nuclear intensity is successful in nonhyperkeratotic layers and shows differentiation between scattering properties of normal and dysplastic epithelium and invasive cancer. PMID:15568948

  11. Handheld histology-equivalent sectioning laser-scanning confocal optical microscope for interventional imaging.

    PubMed

    Kumar, Karthik; Avritscher, Rony; Wang, Youmin; Lane, Nancy; Madoff, David C; Yu, Tse-Kuan; Uhr, Jonathan W; Zhang, Xiaojing

    2010-04-01

    A handheld, forward-imaging, laser-scanning confocal microscope (LSCM) demonstrating optical sectioning comparable with microtome slice thicknesses in conventional histology, targeted towards interventional imaging, is reported. Fast raster scanning (approximately 2.5 kHz line scan rate, 3.0-5.0 frames per second) was provided by a 2-axis microelectromechanical system (MEMS) scanning mirror fabricated by a method compatible with complementary metal-oxide-semiconductor (CMOS) processing. Cost-effective rapid-prototyped packaging combined the MEMS mirror with micro-optical components into a probe with 18 mm outer diameter and 54 mm rigid length. ZEMAX optical design simulations indicate the ability of the handheld optical system to obtain lateral resolution of 0.31 and axial resolution of 2.85 microm. Lateral and axial resolutions are experimentally measured at 0.5 microm and 4.2 microm respectively, with field of view of 200 x 125 microm. Results of reflectance imaging of ex vivo swine liver, and fluorescence imaging of the expression of cytokeratin and mammaglobin tumor biomarkers in epithelial human breast tissue from metastatic breast cancer patients are presented. The results indicate that inexpensive, portable handheld optical microscopy tools based on silicon micromirror technologies could be important in interventional imaging, complementing existing coarse-resolution techniques to improve the efficacy of disease diagnosis, image-guided excisional microsurgery, and monitored photodynamic therapy. PMID:20012209

  12. A stereo-compound hybrid microscope for combined intracellular and optical recording of invertebrate neural network activity.

    PubMed

    Frost, William N; Wang, Jean; Brandon, Christopher J

    2007-05-15

    Optical recording studies of invertebrate neural networks with voltage-sensitive dyes seldom employ conventional intracellular electrodes. This may in part be due to the traditional reliance on compound microscopes for such work. While such microscopes have high light-gathering power, they do not provide depth of field, making working with sharp electrodes difficult. Here we describe a hybrid microscope design, with switchable compound and stereo objectives, that eases the use of conventional intracellular electrodes in optical recording experiments. We use it, in combination with a voltage-sensitive dye and photodiode array, to identify neurons participating in the swim motor program of the marine mollusk Tritonia. This microscope design should be applicable to optical recording studies in many preparations. PMID:17306887

  13. Microscopic vision modeling method by direct mapping analysis for micro-gripping system with stereo light microscope.

    PubMed

    Wang, Yuezong; Zhao, Zhizhong; Wang, Junshuai

    2016-04-01

    We present a novel and high-precision microscopic vision modeling method, which can be used for 3D data reconstruction in micro-gripping system with stereo light microscope. This method consists of four parts: image distortion correction, disparity distortion correction, initial vision model and residual compensation model. First, the method of image distortion correction is proposed. Image data required by image distortion correction comes from stereo images of calibration sample. The geometric features of image distortions can be predicted though the shape deformation of lines constructed by grid points in stereo images. Linear and polynomial fitting methods are applied to correct image distortions. Second, shape deformation features of disparity distribution are discussed. The method of disparity distortion correction is proposed. Polynomial fitting method is applied to correct disparity distortion. Third, a microscopic vision model is derived, which consists of two models, i.e., initial vision model and residual compensation model. We derive initial vision model by the analysis of direct mapping relationship between object and image points. Residual compensation model is derived based on the residual analysis of initial vision model. The results show that with maximum reconstruction distance of 4.1mm in X direction, 2.9mm in Y direction and 2.25mm in Z direction, our model achieves a precision of 0.01mm in X and Y directions and 0.015mm in Z direction. Comparison of our model with traditional pinhole camera model shows that two kinds of models have a similar reconstruction precision of X coordinates. However, traditional pinhole camera model has a lower precision of Y and Z coordinates than our model. The method proposed in this paper is very helpful for the micro-gripping system based on SLM microscopic vision. PMID:26924646

  14. Smart microscope: an adaptive optics learning system for aberration correction in multiphoton confocal microscopy.

    PubMed

    Albert, O; Sherman, L; Mourou, G; Norris, T B; Vdovin, G

    2000-01-01

    Off-axis aberrations in a beam-scanning multiphoton confocal microscope are corrected with a deformable mirror. The optimal mirror shape for each pixel is determined by a genetic learning algorithm, in which the second-harmonic or two-photon fluorescence signal from a reference sample is maximized. The speed of the convergence is improved by use of a Zernike polynomial basis for the deformable mirror shape. This adaptive optical correction scheme is implemented in an all-reflective system by use of extremely short (10-fs) optical pulses, and it is shown that the scanning area of an f:1 off-axis parabola can be increased by nine times with this technique. PMID:18059779

  15. Optimization of polarizer azimuth in improving domain image contrast in magneto-optical Kerr microscope

    NASA Astrophysics Data System (ADS)

    Wang, X.; Lian, J.; Li, P.; Li, X.; Li, M. M.; Wang, Y.; Liu, Y. X.

    2016-02-01

    The magneto-optical Kerr effect (MOKE) is a widely used technique in magnetic domain imaging for its high surface sensitivity and external magnetic compatibility. In this work, we use the generalized magneto-optical ellipsometry technique to study the influence of polarizer and analyzer azimuth on domain image contrast in the Kerr microscope. Results show that the image contrasts around the extinction place are larger than other area. When the polarizer and analyzer are set slightly deviated from the extinction condition (0.35°,89.7°), the maximum image contrast can be obtained. The color map of image contrast on polarizer and analyzer angle is given by measuring the MOKE response of 200 nm permalloy. Results verify the validity of the conclusion.

  16. Camera, handlens, and microscope optical system for imaging and coupled optical spectroscopy

    NASA Technical Reports Server (NTRS)

    Mungas, Greg S. (Inventor); Boynton, John (Inventor); Sepulveda, Cesar A. (Inventor); Nunes de Sepulveda, legal representative, Alicia (Inventor); Gursel, Yekta (Inventor)

    2012-01-01

    An optical system comprising two lens cells, each lens cell comprising multiple lens elements, to provide imaging over a very wide image distance and within a wide range of magnification by changing the distance between the two lens cells. An embodiment also provides scannable laser spectroscopic measurements within the field-of-view of the instrument.

  17. Camera, handlens, and microscope optical system for imaging and coupled optical spectroscopy

    NASA Technical Reports Server (NTRS)

    Mungas, Greg S. (Inventor); Boynton, John (Inventor); Sepulveda, Cesar A. (Inventor); Nunes de Sepulveda, Alicia (Inventor); Gursel, Yekta (Inventor)

    2011-01-01

    An optical system comprising two lens cells, each lens cell comprising multiple lens elements, to provide imaging over a very wide image distance and within a wide range of magnification by changing the distance between the two lens cells. An embodiment also provides scannable laser spectroscopic measurements within the field-of-view of the instrument.

  18. 3D microscope imaging robust to restoration artifacts introduced by optically thick specimens

    NASA Astrophysics Data System (ADS)

    Patwary, Nurmohammed; King, Sharon V.; Preza, Chrysanthe

    2015-03-01

    We demonstrate 3D microscope imaging using computational optical sectioning microscopy (COSM) with an engineered point-spread function (PSF) robust to depth-induced spherical aberration (SA). Earlier we demonstrated that wavefront encoding (WFE) using a squared cubic (SQUBIC) phase mask reduces the PSF depth-variance in the presence of SA and that space-invariant (SI) restoration of simulated images using a single WFE-PSF does not lead to artifacts as in the conventional case. In this study, we show experimental verification of our WFE COSM approach. The WFE system used is a commercial microscope with a modified side port imaging path, where a spatial light modulator projects the SQUBIC phase mask on the back focal plane of the imaging lens. High resolution images of a test sample with 6 μm in diameter microspheres embedded in UV-cured optical cement (RI = 1.47) were captured using both the engineered and the conventional imaging paths of the system. The acquired images were restored using a regularized SI expectation maximization algorithm based on Tikhonov-Miller regularization with a roughness penalty. A comparative study quantified in terms of the correlation coefficients between the XZ medial sections of the restored images, from experimental data, shows an 11% reduction in depth sensitivity in the SQUBIC system compared to the conventional system.

  19. Optical systems integrated modeling

    NASA Technical Reports Server (NTRS)

    Shannon, Robert R.; Laskin, Robert A.; Brewer, SI; Burrows, Chris; Epps, Harlan; Illingworth, Garth; Korsch, Dietrich; Levine, B. Martin; Mahajan, Vini; Rimmer, Chuck

    1992-01-01

    An integrated modeling capability that provides the tools by which entire optical systems and instruments can be simulated and optimized is a key technology development, applicable to all mission classes, especially astrophysics. Many of the future missions require optical systems that are physically much larger than anything flown before and yet must retain the characteristic sub-micron diffraction limited wavefront accuracy of their smaller precursors. It is no longer feasible to follow the path of 'cut and test' development; the sheer scale of these systems precludes many of the older techniques that rely upon ground evaluation of full size engineering units. The ability to accurately model (by computer) and optimize the entire flight system's integrated structural, thermal, and dynamic characteristics is essential. Two distinct integrated modeling capabilities are required. These are an initial design capability and a detailed design and optimization system. The content of an initial design package is shown. It would be a modular, workstation based code which allows preliminary integrated system analysis and trade studies to be carried out quickly by a single engineer or a small design team. A simple concept for a detailed design and optimization system is shown. This is a linkage of interface architecture that allows efficient interchange of information between existing large specialized optical, control, thermal, and structural design codes. The computing environment would be a network of large mainframe machines and its users would be project level design teams. More advanced concepts for detailed design systems would support interaction between modules and automated optimization of the entire system. Technology assessment and development plans for integrated package for initial design, interface development for detailed optimization, validation, and modeling research are presented.

  20. An Alternative Tapping Scanning Near-Field Optical Microscope Setup Enabling the Study of Biological Systems in Liquid Environment

    NASA Astrophysics Data System (ADS)

    Girasole, M.; Longo, G.; Cricenti, A.

    2006-03-01

    A new aperture scanning near-field optical microscope operating in the intermittent contact mode using a non-bent optical fiber is introduced. The microscope was built modifying a classical scanning near-field optical microscope (SNOM) unit introducing a patented probe-holder (MTP) which contains a piezo-motor and a bimorph-transductor. The main advantages of the present set-up in terms of stability, versatility, optical resolution, and quality of the collected signals are described. The instrument works properly while exerting a minimum perturbation on the sample thus overcoming the major drawbacks of different SNOM-based imaging modes and allowing to study very delicate samples including living cells in physiological environment.

  1. Quantum coherent optical phase modulation in an ultrafast transmission electron microscope

    NASA Astrophysics Data System (ADS)

    Feist, Armin; Echternkamp, Katharina E.; Schauss, Jakob; Yalunin, Sergey V.; Schäfer, Sascha; Ropers, Claus

    2015-05-01

    Coherent manipulation of quantum systems with light is expected to be a cornerstone of future information and communication technology, including quantum computation and cryptography. The transfer of an optical phase onto a quantum wavefunction is a defining aspect of coherent interactions and forms the basis of quantum state preparation, synchronization and metrology. Light-phase-modulated electron states near atoms and molecules are essential for the techniques of attosecond science, including the generation of extreme-ultraviolet pulses and orbital tomography. In contrast, the quantum-coherent phase-modulation of energetic free-electron beams has not been demonstrated, although it promises direct access to ultrafast imaging and spectroscopy with tailored electron pulses on the attosecond scale. Here we demonstrate the coherent quantum state manipulation of free-electron populations in an electron microscope beam. We employ the interaction of ultrashort electron pulses with optical near-fields to induce Rabi oscillations in the populations of electron momentum states, observed as a function of the optical driving field. Excellent agreement with the scaling of an equal-Rabi multilevel quantum ladder is obtained, representing the observation of a light-driven `quantum walk' coherently reshaping electron density in momentum space. We note that, after the interaction, the optically generated superposition of momentum states evolves into a train of attosecond electron pulses. Our results reveal the potential of quantum control for the precision structuring of electron densities, with possible applications ranging from ultrafast electron spectroscopy and microscopy to accelerator science and free-electron lasers.

  2. Optical microscope using an interferometric source of two-color, two-beam entangled photons

    DOEpatents

    Dress, William B.; Kisner, Roger A.; Richards, Roger K.

    2004-07-13

    Systems and methods are described for an optical microscope using an interferometric source of multi-color, multi-beam entangled photons. A method includes: downconverting a beam of coherent energy to provide a beam of multi-color entangled photons; converging two spatially resolved portions of the beam of multi-color entangled photons into a converged multi-color entangled photon beam; transforming at least a portion of the converged multi-color entangled photon beam by interaction with a sample to generate an entangled photon specimen beam; and combining the entangled photon specimen beam with an entangled photon reference beam within a single beamsplitter. An apparatus includes: a multi-refringent device providing a beam of multi-color entangled photons; a condenser device optically coupled to the multi-refringent device, the condenser device converging two spatially resolved portions of the beam of multi-color entangled photons into a converged multi-color entangled photon beam; a beam probe director and specimen assembly optically coupled to the condenser device; and a beam splitter optically coupled to the beam probe director and specimen assembly, the beam splitter combining an entangled photon specimen beam from the beam probe director and specimen assembly with an entangled photon reference beam.

  3. Novel failure analysis techniques using photon probing with a scanning optical microscope

    SciTech Connect

    Cole, E.I. Jr.; Soden, J.M.; Rife, J.L.; Barton, D.L.; Henderson, C.L.

    1993-12-31

    Three new failure analysis techniques for integrated circuits (ICs) have been developed using localized photon probing with a scanning optical microscope (SOM). The first two are light-induced voltage alteration (LIVA) imaging techniques that (1) localize open-circuited and damaged junctions and (2) image transistor logic states. The third technique uses the SOM to control logic states optically from the IC backside. LIVA images are produced by monitoring the voltage fluctuations of a constant current power supply as a laser beam is scanned over the IC. High selectivity for localizing defects has been demonstrated using the LIVA approach. Logic state mapping results, similar to previous work using biased optical beam induced current (OBIC) and laser probing approaches have also been produced using LIVA. Application of the two LIVA based techniques to backside failure analysis has been demonstrated using an infrared laser source. Optical logic state control is based upon earlier work examining transistor response to photon injection. The physics of each method and their applications for failure analysis are described.

  4. Geometric model from microscopic theory for nuclear absorption

    NASA Technical Reports Server (NTRS)

    John, Sarah; Townsend, Lawrence W.; Wilson, John W.; Tripathi, Ram K.

    1993-01-01

    A parameter-free geometric model for nuclear absorption is derived herein from microscopic theory. The expression for the absorption cross section in the eikonal approximation, taken in integral form, is separated into a geometric contribution that is described by an energy-dependent effective radius and two surface terms that cancel in an asymptotic series expansion. For collisions of light nuclei, an expression for the effective radius is derived from harmonic oscillator nuclear density functions. A direct extension to heavy nuclei with Woods-Saxon densities is made by identifying the equivalent half-density radius for the harmonic oscillator functions. Coulomb corrections are incorporated, and a simplified geometric form of the Bradt-Peters type is obtained. Results spanning the energy range from 1 MeV/nucleon to 1 GeV/nucleon are presented. Good agreement with experimental results is obtained.

  5. A microscopic lane changing process model for multilane traffic

    NASA Astrophysics Data System (ADS)

    Lv, Wei; Song, Wei-guo; Liu, Xiao-dong; Ma, Jian

    2013-03-01

    In previous simulations lane-changing behavior is usually assumed as an instantaneous action. However, in real traffic, lane changing is a continuing process which can seriously affect the following cars. In this paper, a microscopic lane-changing process (LCP) model is clearly described. A new idea of simplifying the lane-changing process to the car-following framework is presented by controlling fictitious cars. To verify the model, the results of flow, lane-changing frequency, and single-car velocity are extracted from experimental observations and are compared with corresponding simulation. It is found that the LCP model agrees well with actual traffic flow and lane-changing behaviors may induce a 12%-18% reduction of traffic flow. The results also reflect that most of the drivers on the two roads in a city are conservative but not aggressive to change lanes. Investigation of lane-changing frequency shows that the largest lane-changing frequency occurs at a medium density range from 15 vehs km lane to 35 vehs km lane. It also implies that the lane-changing process might strengthen velocity variation at medium density and weaken velocity variation at high density. It is hoped that the idea of this study may be helpful to promote the modeling and simulation study of traffic flow.

  6. Microscopic transport model animation visualisation on KML base

    NASA Astrophysics Data System (ADS)

    Yatskiv, I.; Savrasovs, M.

    2012-10-01

    By reading classical literature devoted to the simulation theory it could be found that one of the greatest possibilities of simulation is the ability to present processes inside the system by animation. This gives to the simulation model additional value during presentation of simulation results for the public and authorities who are not familiar enough with simulation. That is why most of universal and specialised simulation tools have the ability to construct 2D and 3D representation of the model. Usually the development of such representation could take much time and there must be put a lot forces into creating an adequate 3D representation of the model. For long years such well-known microscopic traffic flow simulation software tools as VISSIM, AIMSUN and PARAMICS have had a possibility to produce 2D and 3D animation. But creation of realistic 3D model of the place where traffic flows are simulated, even in these professional software tools it is a hard and time consuming action. The goal of this paper is to describe the concepts of use the existing on-line geographical information systems for visualisation of animation produced by simulation software. For demonstration purposes the following technologies and tools have been used: PTV VISION VISSIM, KML and Google Earth.

  7. Sedimentological Investigations of the Martian Surface using the Mars 2001 Robotic Arm Camera and MECA Optical Microscope

    NASA Technical Reports Server (NTRS)

    Rice, J. W., Jr.; Smith, P. H.; Marshall, J. R.

    1999-01-01

    The first microscopic sedimentological studies of the Martian surface will commence with the landing of the Mars Polar Lander (MPL) December 3, 1999. The Robotic Arm Camera (RAC) has a resolution of 25 um/p which will permit detailed micromorphological analysis of surface and subsurface materials. The Robotic Ann will be able to dig up to 50 cm below the surface. The walls of the trench will also be inspected by RAC to look for evidence of stratigraphic and / or sedimentological relationships. The 2001 Mars Lander will build upon and expand the sedimentological research begun by the RAC on MPL. This will be accomplished by: (1) Macroscopic (dm to cm): Descent Imager, Pancam, RAC; (2) Microscopic (mm to um RAC, MECA Optical Microscope (Figure 2), AFM This paper will focus on investigations that can be conducted by the RAC and MECA Optical Microscope.

  8. Collective Diffusion Model for Ion Conduction through Microscopic Channels

    PubMed Central

    Liu, Yingting; Zhu, Fangqiang

    2013-01-01

    Ion conduction through microscopic channels is of central importance in both biology and nanotechnology. To better understand the current-voltage (I-V) dependence of ion channels, here we describe and prove a collective diffusion model that quantitatively relates the spontaneous ion permeation at equilibrium to the stationary ionic fluxes driven by small voltages. The model makes it possible to determine the channel conductance in the linear I-V range from equilibrium simulations without the application of a voltage. To validate the theory, we perform molecular-dynamics simulations on two channels—a conical-shaped nanopore and the transmembrane pore of an α-hemolysin—under both equilibrium and nonequilibrium conditions. The simulations reveal substantial couplings between the motions of cations and anions, which are effectively captured by the collective coordinate in the model. Although the two channels exhibit very different linear ranges in the I-V curves, in both cases the channel conductance at small voltages is in reasonable agreement with the prediction from the equilibrium simulation. The simulations also suggest that channel charges, rather than geometric asymmetry, play a more prominent role in current rectification. PMID:23442858

  9. Alpha Ni optical model potentials

    NASA Astrophysics Data System (ADS)

    Billah, M. M.; Abdullah, M. N. A.; Das, S. K.; Uddin, M. A.; Basak, A. K.; Reichstein, I.; Sen Gupta, H. M.; Malik, F. B.

    2005-11-01

    The present work reports the analyses of the experimental differential cross-sections of α elastic scattering on 58,60,62,64Ni, over a wide range of incident energies, in terms of four types of optical potentials, namely shallow (molecular), deep non-monotonic, squared Woods-Saxon and semi-microscopic folding. All the four potentials produce a reasonable description of the experimental data. The potential parameters, calculated from the energy density functional theory using a realistic two-nucleon interaction, resemble closely the molecular potential parameters, which produce the best description of the experimental data for the four isotopes. The volume integrals and the energy variation of the parameters indicate the effect of the shell-model structure on the potentials. The folding potentials, without any need for renormalization, are found to describe reasonably well the elastic scattering cross-section data for the four isotopes within the energy range considered. In conformity with the previous observation on Ca isotopes, the number of nucleons, 4A=49, existing in α-like clusters in the target nucleus, is the same for the four isotopes, considered herein.

  10. Unveiling nanometric plasmons optical properties with advanced electron spectroscopy in the Scanning Transmission Electron Microscope

    NASA Astrophysics Data System (ADS)

    Kociak, Mathieu

    Since the pioneering work of Yamamoto, the use of electron spectroscopy such as Cathodoluminescence (CL) and Electron Energy Loss Spectroscopy (EELS) in a Scanning (Transmission) Electron Microscope (STEM) has considerably helped improving our understanding of the optical properties of metallic nanoparticles. The resemblance of spectroscopic signals from electron and pure optical techniques leads to the intuition that both types of techniques are very close, an idea theoretically discussed by F.J. Garcia de Abajo and coworkers. However, it is also quite intuitive that CL and EELS should be different. For example, EELS helps detecting any sort of modes while CL can only detect radiative ones. On the other hand, even between optical spectroscopy techniques, clear differences such as energy shifts or spectral shapes changes are expected in the case of plasmons. The lack of adapted instrumentation capable of performing combined EELS and CL, as well as theoretical developments allowing to account for the generic difference between EELS and CL and their optical counterparts impeached a comprehensive understanding of plasmons physics with the otherwise amazing electron spectroscopies. In this talk, I will present recent experimental results showing combined EELS and CL spectral mapping of plasmonic properties for nanoparticles with several shapes (triangles, cubes, stars...) and composition (gold, silver, aluminum...). Helped with different theoretical tools, I will try to show how these results can be related to their optical counterparts (extinction, scattering), and what type of physical insights can be gained from these combined measurements. Finally, if time allows, pointing the weaknesses of state-of-the-art CL and EELS (in terms of spectral range and/or spectral resolution), I will present EELS results obtained on highly monochromated electron beams that could cope with these limitations

  11. Microscopic correlates of macroscopic optical property changes during thermal coagulation of myocardium

    NASA Astrophysics Data System (ADS)

    Thomsen, Sharon L.; Jacques, Steven L.; Flock, Stephen T.

    1990-06-01

    The effects of thermal coagulation on the macroscopic optical transport parameters that govern the distribution of light in tissues were studied. The optical absorption coefficients, pa, and the reduced scattering coefficients, j.ts (1-g), were deduced from measurements of total transmission and total reflectance of HeNe laser radiation ( = 633 and 594 nm) directed to thin slices of dog myocardium heated in vitro. The first optical changes were detected at 45°and, at temperatures above 65°, there was a 2-fold increase in absorption and a 7-fold increase in scattering. Transmission electron microscopy of laser-induced thermally coagulated lesions in rat myocardium (cw argon ion, = 514 nm) revealed ultrastructural alterations that were considered responsible for the increased scattering based on Mie theory. These microscopic alterations included disruption of mitochondria to form aggregates of electron dense granules and granular transformation of thermally coagulated proteins of the sarcomeres and cytoplasm. Our preliminary analyses suggest that the mitochondrial granules and the protein granules contribute to the increased scattering oflight in thermally coagulated myocardium.

  12. Microscopic scattering imaging measurement and digital evaluation system of defects for fine optical surface

    NASA Astrophysics Data System (ADS)

    Liu, Dong; Yang, Yongying; Wang, Lin; Zhuo, Yongmo; Lu, Chunhua; Yang, Liming; Li, Ruijie

    2007-10-01

    According to ISO10110-7 and the engineering standards of Inertial Confinement Fusion (ICF), this paper presents a microscopic scattering imaging and analyzing system which allows one to automatically evaluate defects in random distributions and shapes on the surface of fine optical components of large aperture. The annularly disposed multi-beam fiber light sources illuminate the target surface with a special angle. The image, which has bright defects on black background, is suitable for digital image processing. With XY-scanning system, the defect information of full aperture can be obtained by stitching the sub-aperture image array, according to the algorithms of template matching. The full aperture image is divided into N × N sub-apertures, each of which has view field of approximate 3 mm × 4 mm. Image processing software for image recognition has been established using mathematical morphology with high computing efficiency and friendly graphics user interface. A group of standard reticules fabricated by binary optics can scale defects for calibration. As a result the lateral resolution of the system is better than sub-micrometer while the total view field can be hundreds of millimeters. The comparison quantitative data results between the experiment and standard demonstrate the system is competent for the digital evaluation of defect characterization of fine optical surfaces, especially for the ones with large aperture.

  13. Imaging microscopic structures in pathological retinas using a flood-illumination adaptive optics retinal camera

    NASA Astrophysics Data System (ADS)

    Viard, Clément; Nakashima, Kiyoko; Lamory, Barbara; Pâques, Michel; Levecq, Xavier; Château, Nicolas

    2011-03-01

    This research is aimed at characterizing in vivo differences between healthy and pathological retinal tissues at the microscopic scale using a compact adaptive optics (AO) retinal camera. Tests were performed in 120 healthy eyes and 180 eyes suffering from 19 different pathological conditions, including age-related maculopathy (ARM), glaucoma and rare diseases such as inherited retinal dystrophies. Each patient was first examined using SD-OCT and infrared SLO. Retinal areas of 4°x4° were imaged using an AO flood-illumination retinal camera based on a large-stroke deformable mirror. Contrast was finally enhanced by registering and averaging rough images using classical algorithms. Cellular-resolution images could be obtained in most cases. In ARM, AO images revealed granular contents in drusen, which were invisible in SLO or OCT images, and allowed the observation of the cone mosaic between drusen. In glaucoma cases, visual field was correlated to changes in cone visibility. In inherited retinal dystrophies, AO helped to evaluate cone loss across the retina. Other microstructures, slightly larger in size than cones, were also visible in several retinas. AO provided potentially useful diagnostic and prognostic information in various diseases. In addition to cones, other microscopic structures revealed by AO images may also be of interest in monitoring retinal diseases.

  14. New computational solution to quantify synthetic material porosity from optical microscopic images.

    PubMed

    De Albuquerque, V H C; Filho, P P Rebouças; Cavalcante, T S; Tavares, J M R S

    2010-10-01

    This paper presents a new computational solution to quantify the porosity of synthetic materials from optical microscopic images. The solution is based on an artificial neuronal network of the multilayer perceptron type and a backpropagation algorithm is used for training. To evaluate this new solution, 40 sample images of a synthetic material were analysed and the quality of the results was confirmed by human visual analysis. In addition, these results were compared with ones obtained with a commonly used commercial system confirming their superior quality and the shorter time needed. The effect of images with noise was also studied and the new solution showed itself to be more reliable. The training phase of the new solution was analysed confirming that it can be performed in a very easy and straightforward manner. Thus, the new solution demonstrated that it is a valid and adequate option for researchers, engineers, specialists and other professionals to quantify the porosity of materials from microscopic images in an automatic, fast, efficient and reliable manner. PMID:21050213

  15. Quantitative measurements of electromechanical response with a combined optical beam and interferometric atomic force microscope

    NASA Astrophysics Data System (ADS)

    Labuda, Aleksander; Proksch, Roger

    2015-06-01

    An ongoing challenge in atomic force microscope (AFM) experiments is the quantitative measurement of cantilever motion. The vast majority of AFMs use the optical beam deflection (OBD) method to infer the deflection of the cantilever. The OBD method is easy to implement, has impressive noise performance, and tends to be mechanically robust. However, it represents an indirect measurement of the cantilever displacement, since it is fundamentally an angular rather than a displacement measurement. Here, we demonstrate a metrological AFM that combines an OBD sensor with a laser Doppler vibrometer (LDV) to enable accurate measurements of the cantilever velocity and displacement. The OBD/LDV AFM allows a host of quantitative measurements to be performed, including in-situ measurements of cantilever oscillation modes in piezoresponse force microscopy. As an example application, we demonstrate how this instrument can be used for accurate quantification of piezoelectric sensitivity—a longstanding goal in the electromechanical community.

  16. Quantitative measurements of electromechanical response with a combined optical beam and interferometric atomic force microscope

    SciTech Connect

    Labuda, Aleksander; Proksch, Roger

    2015-06-22

    An ongoing challenge in atomic force microscope (AFM) experiments is the quantitative measurement of cantilever motion. The vast majority of AFMs use the optical beam deflection (OBD) method to infer the deflection of the cantilever. The OBD method is easy to implement, has impressive noise performance, and tends to be mechanically robust. However, it represents an indirect measurement of the cantilever displacement, since it is fundamentally an angular rather than a displacement measurement. Here, we demonstrate a metrological AFM that combines an OBD sensor with a laser Doppler vibrometer (LDV) to enable accurate measurements of the cantilever velocity and displacement. The OBD/LDV AFM allows a host of quantitative measurements to be performed, including in-situ measurements of cantilever oscillation modes in piezoresponse force microscopy. As an example application, we demonstrate how this instrument can be used for accurate quantification of piezoelectric sensitivity—a longstanding goal in the electromechanical community.

  17. Toolkit for the Automated Characterization of Optical Trapping Forces on Microscopic Particles

    NASA Astrophysics Data System (ADS)

    Glaser, Joseph; Hoeprich, David; Resnick, Andrew

    2014-03-01

    Optical traps have been in use in microbiological studies for the past 40 years to obtain noninvasive control of microscopic particles. However, the magnitude of the applied forces is often unknown. Therefore, we have developed an automated data acquisition and processing system which characterizes trap properties for known particle geometries. Extensive experiments and measurements utilizing well-characterized objects were performed and compared to literature to confirm the system's performance. This system will enable the future analysis of a trapped primary cilium, a slender rod-shaped organelle with aspect ratio L/R >30, where `L' is the cilium length and `R' the cilium diameter. The trapping of cilia is of primary importance, as it will lead to the precise measurements of mechanical properties of the organelle and its significance to the epithelial cell. Support from the National Institutes of Health, 1R15DK092716 is gratefully acknowledged.

  18. Animated Optical Microscope Zoom in from Phoenix Launch to Martian Surface

    NASA Technical Reports Server (NTRS)

    2008-01-01

    [figure removed for brevity, see original site] Click on image for animation

    This animated camera view zooms in from NASA's Phoenix Mars Lander launch site all the way to Phoenix's Microscopy and Electrochemistry and C Eonductivity Analyzer (MECA) aboard the spacecraft on the Martian surface. The final frame shows the soil sample delivered to MECA as viewed through the Optical Microscope (OM) on Sol 17 (June 11, 2008), or the 17th Martian day.

    The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  19. Microscopic models for the study of taxpayer audit effects

    NASA Astrophysics Data System (ADS)

    Bertotti, Maria Letizia; Modanese, Giovanni

    2016-03-01

    A microscopic dynamic model is here constructed and analyzed, describing the evolution of the income distribution in the presence of taxation and redistribution in a society in which also tax evasion and auditing processes occur. The focus is on effects of enforcement regimes, characterized by different choices of the audited taxpayer fraction and of the penalties imposed to noncompliant individuals. A complex systems perspective is adopted: society is considered as a system composed by a large number of heterogeneous individuals. These are divided into income classes and may as well have different tax evasion behaviors. The variation in time of the number of individuals in each class is described by a system of nonlinear differential equations of the kinetic discretized Boltzmann type involving transition probabilities. A priori, one could think that audits and fines should have a positive effect on the reduction of economic inequality and correspondingly of the Gini index G. According to our model, however, such effect is rather small. In contrast, the effect on the increase of the tax revenue may be significant.

  20. Effects of microscopic diffusion and rotational mixing on stellar models

    NASA Astrophysics Data System (ADS)

    Chaboyer, Brian Charles

    1993-01-01

    We have calculated evolutionary tracks for halo stars and constructed isochrones with alpha-enhanced compositions which cover the entire globular cluster metallicity range and include the effects of the diffusion of He-4. We find that including the effects of helium diffusion has a negligible effect (less than 0.5 Gyr) on the derived ages of globular clusters. Regardless of the inclusion of helium diffusion, we find a significant age spread of 5 Gyr among the globular clusters. The oldest globular cluster studied was M92 with an age of 17 +/- 2 Gyr old. The stellar models may be tested by comparing the Li-7 depletion and surface rotation rates to observations in young clusters stars. The observed Li-7 abundances clearly indicate that standard or diffusive models do not deplete enough Li-7. Instabilities induced by rotation provide an additional mixing mechanism. For this reason the stellar evolution code was modified to include the combined effects of diffusion and rotational mixing of H-1, He-4 and the trace elements He-3, Li-7 and Be-9. The calibrated solar models have a convection zone depth of 0.709-0.714 solar radius, in excellent agreement with the observed depth of (0.713 +/- 0.003) solar radius. The rotational mixing inhibits the diffusion in the outer parts of the models, leading to a decrease in the envelope diffusion by 50-80 percent. These models are able to reproduce the Li-7 abundances and rotation velocities observed in young cluster stars. Observations of Li-7 abundances in extremely metal poor halo stars provide another test of the stellar models. Standard models do a good job of fitting the observed Li-7 abundances and predict a primordial Li-7 abundance of log N(Li) = 2.24 +/- 0.03. Models of hot stars which include microscopic diffusion, but not rotational mixing, deplete too much Li-7. The (Fe/H) = 2.28 stellar models which include both diffusion and rotational mixing provide an excellent match to the observations, and predict a primordial Li-7

  1. Advantages of microscope-integrated intraoperative online optical coherence tomography: usage in Boston keratoprosthesis type I surgery

    NASA Astrophysics Data System (ADS)

    Siebelmann, Sebastian; Steven, Philipp; Hos, Deniz; Hüttmann, Gereon; Lankenau, Eva; Bachmann, Björn; Cursiefen, Claus

    2016-01-01

    Boston keratoprosthesis (KPro) type I is a technique to treat patients with corneal diseases that are not amenable to conventional keratoplasty. Correct assembly and central implantation of the prosthesis are crucial for postoperative visual recovery. This study investigates the potential benefit of intraoperative optical coherence tomography (OCT) to monitor KPro surgery. Retrospective case series are presented for two patients who underwent Boston KPro type I implantation. The surgery in both patients was monitored intraoperatively using a commercially available intraoperative OCT (iOCT) device mounted on a surgical microscope. Microscope-integrated intraoperative OCT was able to evaluate the correct assembly and implantation of the KPro. All parts of the prosthesis were visible, and interfaces between the corneal graft and titanium backplate or anterior optics were clearly depictable. Moreover, iOCT visualized a gap between the backplate and graft in one case, and in the other case, a gap between the anterior optic and graft. Neither gap was visible with a conventional surgical microscope. The gap between the anterior optic and the graft could easily be corrected. Microscope-integrated iOCT delivers enhanced information, adding to the normal surgical microscope view during KPro surgery. Correct assembly can be controlled as well as the correct placement of the Boston KPro into the anterior chamber.

  2. Dynamics of a piezoelectric tuning fork/optical fiber assembly in a near-field scanning optical microscope

    NASA Astrophysics Data System (ADS)

    Shelimov, Konstantin B.; Davydov, Dmitri N.; Moskovits, Martin

    2000-02-01

    Factors leading to a decrease in the resonance quality (the Q factor) of quartz microtuning fork/optical fiber assemblies used as sensing elements in near-field scanning optical microscopes were considered using a simple elastomechanical analysis. Experiments to test the predictions of the analysis were carried out and strategies for recovering high Q factors were proposed and tested. Three major factors affecting the magnitude of the Q factor are discussed. The first is the stiffness imparted to the tine of the microtuning fork by the optical fiber attached to it; the second is the location of the attachment point of the fiber along the tine; the third is the resonant vibrational excitation of the fiber tip which acts as an energy dissipative channel. For tapping mode operation using a standard 125 μm diameter fiber, the large longitudinal stiffness of the fiber results in a dramatic Q-factor degradation. This effect can be overcome by reducing the diameter of the fiber cladding, d, and by slightly bending the fiber. Under these conditions, bending rather than longitudinal stretching dominates the fiber dynamics. The effective bending force constant for a thinned fiber is predicted to be proportional to d4. A sharp upturn in the Q factor is observed for d⩽25 μm, consistent with this prediction. The effective stiffness and mass of the fiber are also expected to scale approximately as x3, where x is the distance from the point of attachment of the fiber to the fork's base. Hence, the Q factor can be improved further by attaching the fiber closer to the tuning fork's base. Vibrational coupling between the tuning fork and the probe tip can result in a substantial Q-factor degradation for tips of a certain size. By taking these insights into consideration, we were able to construct tapping mode tuning fork/optical fiber assemblies with Q factors of up to 9000.

  3. Femtosecond single optical fiber tweezers enabled two-photon fluorescence excitation of trapped microscopic objects

    NASA Astrophysics Data System (ADS)

    Mishra, Yogeshwar N.; Pinto, Mervyn; Ingle, Ninad; Mohanty, Samarendra K.

    2011-03-01

    Analysis of trapped microscopic objects using fluorescence and Raman spectroscopy is gaining considerable interest. We report on the development of single fiber femto second optical tweezers and its use in two-photon fluorescence (TPF) excitation of trapped fluorescent particles. Trapping of the floating objects led to stable fluorescence emission intensity over a long period of time, suitable for spectroscopic measurements. Trapping depth of few cm was achieved inside colloidal sample with TPF from the trapped particle being visible to the naked eye. Furthermore, the fiber optic trapping was so stable that the trapped particle could be moved in 3D even by holding the fiber in hand and slow maneuvering of the same. Owing to the propagation distance of the Bessel-like beam emerging from the axicon-fiber tip, a relatively longer streak of fluorescence was observed along the microsphere length. The cone angle of axicon was engineered so as to provide better trapping stability and high axial confinement of TPF. The theoretical simulation of fiber optical microbeam profiles emerging from the axicon tip and trapping force estimations was found to be in good agreement with the experimentally observed stiffness and TPF patterns. Apart from miniaturization capability into lab-on- a-chip micro-fluidic devices, the proposed non-invasive micro axicon tipped optical fiber can be used in multifunctional mode for in-depth trapping, rotation, sorting and ablation as well as for two-photon fluorescence excitation of motile sample which will revolutionize biophysics and research in material science.

  4. Quantum coherent optical phase modulation in an ultrafast transmission electron microscope.

    PubMed

    Feist, Armin; Echternkamp, Katharina E; Schauss, Jakob; Yalunin, Sergey V; Schäfer, Sascha; Ropers, Claus

    2015-05-14

    Coherent manipulation of quantum systems with light is expected to be a cornerstone of future information and communication technology, including quantum computation and cryptography. The transfer of an optical phase onto a quantum wavefunction is a defining aspect of coherent interactions and forms the basis of quantum state preparation, synchronization and metrology. Light-phase-modulated electron states near atoms and molecules are essential for the techniques of attosecond science, including the generation of extreme-ultraviolet pulses and orbital tomography. In contrast, the quantum-coherent phase-modulation of energetic free-electron beams has not been demonstrated, although it promises direct access to ultrafast imaging and spectroscopy with tailored electron pulses on the attosecond scale. Here we demonstrate the coherent quantum state manipulation of free-electron populations in an electron microscope beam. We employ the interaction of ultrashort electron pulses with optical near-fields to induce Rabi oscillations in the populations of electron momentum states, observed as a function of the optical driving field. Excellent agreement with the scaling of an equal-Rabi multilevel quantum ladder is obtained, representing the observation of a light-driven 'quantum walk' coherently reshaping electron density in momentum space. We note that, after the interaction, the optically generated superposition of momentum states evolves into a train of attosecond electron pulses. Our results reveal the potential of quantum control for the precision structuring of electron densities, with possible applications ranging from ultrafast electron spectroscopy and microscopy to accelerator science and free-electron lasers. PMID:25971512

  5. Validation of a fiber-based confocal microscope for interventional image-guided procedures: correlation with multispectral optical imaging

    NASA Astrophysics Data System (ADS)

    Herzka, Daniel; Quijano, Jade; Xie, Jianwu; Krueger, Sascha; Weiss, Steffen; Abrat, Benjamin; Osdoit, Anne; Cavé, Charlotte; Burnett, Christopher; Danthi, S. Narasimhan; Li, King

    2006-03-01

    The concept of the biopsy is ubiquitous in current medical diagnosis of cancer and other diseases. The standard biopsy consists of removing a sample of tissue for evaluation and diagnosis, primarily to ascertain the presence of cancer cells by (histo)pathological analyses. However, the advent of new optical imaging modalities and targeted or "smart" agents, that have affinity for a select target, suggests the possibility of performing in vivo tissue characterization without the need for sample removal or the wait for histopathologic processing. Here we present work testing and validating a fiber-based confocal fluorescence microscopic imaging system intended for combination with a larger scale imaging modality (i.e. MRI or CT) to be used in image-guided in vivo tissue characterization. Fiber-based confocal fluorescence microscopic imaging experiments were performed (Cellvizio, Mauna Kea Technologies, Paris, France) in vivo in two mouse models including: 1) EGFP-expressing mouse melanoma model and 2) M21 mouse melanoma model. Both models are known to express integrin α νβ 3, a cell-surface receptor protein. We also performed an experiment in ex vivo chicken muscle tissue labelled with a fluorescein isothiocyanate-lectin targeted compound. In the mouse models, contrast agents that targeted the integrin were injected and the contrast agent localization in tumor was verified by a whole-body multispectral imager. The fiber-based tool was sensitive enough to detect and image the tissue of interest in all different experiments, and was found appropriate for use in interventional catheter-based procedures.

  6. Negative frequencies in wave propagation: A microscopic model

    NASA Astrophysics Data System (ADS)

    Horsley, S. A. R.; Bugler-Lamb, S.

    2016-06-01

    A change in the sign of the frequency of a wave between two inertial reference frames corresponds to a reversal of the phase velocity. Yet from the point of view of the relation E =ℏ ω , a positive quantum of energy apparently becomes a negative-energy one. This is physically distinct from a change in the sign of the wave vector and can be associated with various effects such as Cherenkov radiation, quantum friction, and the Hawking effect. In this work we provide a more detailed understanding of these negative-frequency modes based on a simple microscopic model of a dielectric medium as a lattice of scatterers. We calculate the classical and quantum mechanical radiation damping of an oscillator moving through such a lattice and find that the modes where the frequency has changed sign contribute negatively. In terms of the lattice of scatterers we find that this negative radiation damping arises due to the phase of the periodic force experienced by the oscillator due to the relative motion of the lattice.

  7. Mirror-field entanglement in a microscopic model for quantum optomechanics

    NASA Astrophysics Data System (ADS)

    Sinha, Kanupriya; Lin, Shih-Yuin; Hu, B. L.

    2015-08-01

    We use a microscopic model, the mirror-oscillator-field (MOF) model proposed by C. R. Galley, R. O. Behunin, and B. L. Hu [Phys. Rev. A 87, 043832 (2013), 10.1103/PhysRevA.87.043832], to describe the quantum entanglement between a mirror's center-of-mass (c.m.) motion and a field. In contrast with the conventional approach where the mirror-field entanglement is understood as arising from the radiation pressure of an optical field inducing the motion of the mirror's c.m., the MOF model incorporates the dynamics of the internal degrees of freedom of the mirror that couple to the optical field directly. The major advantage in this approach is that it provides a self-consistent treatment of the three pertinent subsystems (the mirror's c.m. motion, its internal degrees of freedom, and the field) including their back-actions on each other, thereby giving a more accurate account of the quantum correlations between the individual subsystems. The optical and the mechanical properties of a mirror arising from its dynamical interaction with a quantum field are obtained without imposing any boundary conditions on the field additionally, as is done in the conventional way. As one of the new physical features that arise from this self-consistent treatment of the coupled optics and mechanics behavior we observe a coherent transfer of quantum correlations from the field to the mirror via its internal degrees of freedom. We find the quantum entanglement between the optical field and the mirror's center-of-mass motion upon coarse-graining over the internal degree of freedom. Further, we show that in certain parameter regimes the mirror-field entanglement is enhanced when the field interacts resonantly with the mirror's internal degree of freedom, a result which highlights the importance of including the internal structure of the mirror in quantum optomechanical considerations.

  8. Effects of Microscopic Diffusion and Rotational Mixing on Stellar Models

    NASA Astrophysics Data System (ADS)

    Chaboyer, Brian

    1994-02-01

    of fitting the observed Li abundances and predict a primordial Li abundance of log N(Li) = 2.24 +/- 0.03. In models which include microscopic diffusion, but not rotational mixing, too much Li depletion occurs in the hot stars, and the models do not match the observations. The [Fe/H] = -2.28 stellar models which include both diffusion and rotational mixing provide an excellent match to the observations and predict a primordial Li abundance of log N(Li) = 3.13 +/- 0.1. However, the [Fe/H] = -3.28 Li destruction isochrones reveal problems with the combined models. These low metallicity isochrones predict a trend of decreasing log N(Li) with increasing effective temperature which is clearly not present in the observations. (SECTION: Dissertation Summaries)

  9. Bright-field Nanoscopy: Visualizing Nano-structures with Localized Optical Contrast Using a Conventional Microscope.

    PubMed

    Suran, Swathi; Bharadwaj, Krishna; Raghavan, Srinivasan; Varma, Manoj M

    2016-01-01

    Most methods for optical visualization beyond the diffraction limit rely on fluorescence emission by molecular tags. Here, we report a method for visualization of nanostructures down to a few nanometers using a conventional bright-field microscope without requiring additional molecular tags such as fluorophores. The technique, Bright-field Nanoscopy, is based on the strong thickness dependent color of ultra-thin germanium on an optically thick gold film. We demonstrate the visualization of grain boundaries in chemical vapour deposited single layer graphene and the detection of single 40 nm Ag nanoparticles. We estimate a size detection limit of about 2 nm using this technique. In addition to visualizing nano-structures, this technique can be used to probe fluid phenomena at the nanoscale, such as transport through 2D membranes. We estimated the water transport rate through a 1 nm thick polymer film using this technique, as an illustration. Further, the technique can also be extended to study the transport of specific ions in the solution. It is anticipated that this technique will find use in applications ranging from single-nanoparticles resolved sensing to studying nanoscale fluid-solid interface phenomena. PMID:27112966

  10. Bright-field Nanoscopy: Visualizing Nano-structures with Localized Optical Contrast Using a Conventional Microscope

    NASA Astrophysics Data System (ADS)

    Suran, Swathi; Bharadwaj, Krishna; Raghavan, Srinivasan; Varma, Manoj M.

    2016-04-01

    Most methods for optical visualization beyond the diffraction limit rely on fluorescence emission by molecular tags. Here, we report a method for visualization of nanostructures down to a few nanometers using a conventional bright-field microscope without requiring additional molecular tags such as fluorophores. The technique, Bright-field Nanoscopy, is based on the strong thickness dependent color of ultra-thin germanium on an optically thick gold film. We demonstrate the visualization of grain boundaries in chemical vapour deposited single layer graphene and the detection of single 40 nm Ag nanoparticles. We estimate a size detection limit of about 2 nm using this technique. In addition to visualizing nano-structures, this technique can be used to probe fluid phenomena at the nanoscale, such as transport through 2D membranes. We estimated the water transport rate through a 1 nm thick polymer film using this technique, as an illustration. Further, the technique can also be extended to study the transport of specific ions in the solution. It is anticipated that this technique will find use in applications ranging from single-nanoparticles resolved sensing to studying nanoscale fluid-solid interface phenomena.

  11. Bright-field Nanoscopy: Visualizing Nano-structures with Localized Optical Contrast Using a Conventional Microscope

    PubMed Central

    Suran, Swathi; Bharadwaj, Krishna; Raghavan, Srinivasan; Varma, Manoj M.

    2016-01-01

    Most methods for optical visualization beyond the diffraction limit rely on fluorescence emission by molecular tags. Here, we report a method for visualization of nanostructures down to a few nanometers using a conventional bright-field microscope without requiring additional molecular tags such as fluorophores. The technique, Bright-field Nanoscopy, is based on the strong thickness dependent color of ultra-thin germanium on an optically thick gold film. We demonstrate the visualization of grain boundaries in chemical vapour deposited single layer graphene and the detection of single 40 nm Ag nanoparticles. We estimate a size detection limit of about 2 nm using this technique. In addition to visualizing nano-structures, this technique can be used to probe fluid phenomena at the nanoscale, such as transport through 2D membranes. We estimated the water transport rate through a 1 nm thick polymer film using this technique, as an illustration. Further, the technique can also be extended to study the transport of specific ions in the solution. It is anticipated that this technique will find use in applications ranging from single-nanoparticles resolved sensing to studying nanoscale fluid-solid interface phenomena. PMID:27112966

  12. Dark-field microscopic image stitching method for surface defects evaluation of large fine optics.

    PubMed

    Liu, Dong; Wang, Shitong; Cao, Pin; Li, Lu; Cheng, Zhongtao; Gao, Xin; Yang, Yongying

    2013-03-11

    One of the challenges in surface defects evaluation of large fine optics is to detect defects of microns on surfaces of tens or hundreds of millimeters. Sub-aperture scanning and stitching is considered to be a practical and efficient method. But since there are usually few defects on the large aperture fine optics, resulting in no defects or only one run-through line feature in many sub-aperture images, traditional stitching methods encounter with mismatch problem. In this paper, a feature-based multi-cycle image stitching algorithm is proposed to solve the problem. The overlapping areas of sub-apertures are categorized based on the features they contain. Different types of overlapping areas are then stitched in different cycles with different methods. The stitching trace is changed to follow the one that determined by the features. The whole stitching procedure is a region-growing like process. Sub-aperture blocks grow bigger after each cycle and finally the full aperture image is obtained. Comparison experiment shows that the proposed method is very suitable to stitch sub-apertures that very few feature information exists in the overlapping areas and can stitch the dark-field microscopic sub-aperture images very well. PMID:23482166

  13. Effect of condensed water on scanning near-field optical microscope measurement

    NASA Astrophysics Data System (ADS)

    Douas, M.; Serena, P. A.; Marqués, M. I.

    2013-11-01

    The relevance of the scanning near-field optical microscope (SNOM), for near-field characterization, is often shaded by the appearance of artifacts, especially when geometrical characterization is intended. Artifacts are related to many features such as the feedback system or the scanning mode. For non-vacuum environmental conditions, artifact sources may be related to tip geometry and the pollutants attached, either on the tip or on the studied surfaces, altering the optical image. As an environmental element, water vapor could be treated as a source for artifacts, but could also be used as a tool for chemical characterization of hydrophilic patches. Spontaneous meniscus formation between hydrophilic surfaces, such as the tip and the sample, may guide light from the tip to the sample, enhancing the transmitted signal. This study focuses on the effects that water condensation at the nanoscale has on the signals achieved by SNOM, combining two computational methods (Monte Carlo and finite difference time domain) in order to deal with light propagation through heterogeneous media and water condensation.

  14. Generation 3 programmable array microscope (PAM) for high speed large format optical sectioning in fluorescence

    NASA Astrophysics Data System (ADS)

    de Vries, Anthony H. B.; Cook, Nathan P.; Kramer, Stephan; Arndt-Jovin, Donna J.; Jovin, Thomas M.

    2015-03-01

    We report on the current version of the optical sectioning programmable array microscope (PAM) implemented with a single digital micro-mirror device (DMD) spatial light modulator utilized as a mask in both the fluorescence excitation and emission paths. The PAM incorporates structured illumination and structured detection operating in synchrony. A sequence of binary patterns of excitation light in high definition format (1920×1080 elements) is projected into the focal plane of the microscope at the 18 kHz binary frame rate of the Texas Instruments 1080p DMD. The resulting fluorescent emission is captured as two distinct signals: conjugate (c, ca. "on-focus") consisting of light impinging on and deviated from the "on" elements of the DMD, and the non-conjugate (nc, ca. "out-of-focus") light falling on and deviated from the "off" elements. The two distinct, deflected beams are optically filtered and detected either by two individual cameras or captured as adjacent images on a single camera after traversing an image combiner. The sectioned image is gained from a subtraction of the nc image from the c image, weighted in accordance with the pattern(s) used for illumination and detection and the relative exposure times of the cameras. The widefield image is given by the sum of the c and nc images. This procedure allows a high duty cycle (typically 25-50%) of on-elements in the excitation patterns and thus functions with low light intensities, preventing saturation and minimizing photobleaching of sensitive fluorophores. The corresponding acquisition speed is also very high, limited only by the bandwidth of the camera(s) (100 fps full frame with the sCMOS camera in current use) and the optical power of the light source (lasers, large area LEDs). In contrast to the static patterns typical of SIM systems, the programmable array allows optimization of the patterns (duty cycle, feature size and distribution), thus enabling a wide range of applications, ranging from patterned

  15. Toward a microscopic model of bidirectional synaptic plasticity.

    PubMed

    Castellani, Gastone C; Bazzani, Armando; Cooper, Leon N

    2009-08-18

    We show that a 2-step phospho/dephosphorylation cycle for the alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionic acid receptor (AMPAR), as used in in vivo learning experiments to assess long-term potentiation (LTP) induction and establishment, exhibits bistability for a wide range of parameters, consistent with values derived from biological literature. The AMPAR model we propose, hence, is a candidate for memory storage and switching behavior at a molecular-microscopic level. Furthermore, the stochastic formulation of the deterministic model leads to a mesoscopic interpretation by considering the effect of enzymatic fluctuations on the Michelis-Menten average dynamics. Under suitable hypotheses, this leads to a stochastic dynamical system with multiplicative noise whose probability density evolves according to a Fokker-Planck equation in the Stratonovich sense. In this approach, the probability density associated with each AMPAR phosphorylation state allows one to compute the probability of any concentration value, whereas the Michaelis-Menten equations consider the average concentration dynamics. We show that bistable dynamics are robust for multiplicative stochastic perturbations and that the presence of both noise and bistability simulates LTP and long-term depression (LTD) behavior. Interestingly, the LTP part of this model has been experimentally verified as a result of in vivo, one-trial inhibitory avoidance learning protocol in rats, that produced the same changes in hippocampal AMPARs phosphorylation state as observed with in vitro induction of LTP with high-frequency stimulation (HFS). A consequence of this model is the possibility of characterizing a molecular switch with a defined biochemical set of reactions showing bistability and bidirectionality. Thus, this 3-enzymes-based biophysical model can predict LTP as well as LTD and their transition rates. The theoretical results can be, in principle, validated by in vitro and in vivo experiments, such

  16. Design, Fabrication and Testing of Multilayer Coated X-Ray Optics for the Water Window Imaging X-Ray Microscope

    NASA Technical Reports Server (NTRS)

    Spencer, Dwight C.

    1996-01-01

    Hoover et. al. built and tested two imaging Schwarzschild multilayer microscopes. These instruments were constructed as prototypes for the "Water Window Imaging X-Ray Microscope," which is a doubly reflecting, multilayer x-ray microscope configured to operate within the "water window." The "water window" is the narrow region of the x-ray spectrum between the K absorption edges of oxygen (lamda = 23.3 Angstroms) and of carbon (lamda = 43.62 Angstroms), where water is relatively highly transmissive and carbon is highly absorptive. This property of these materials, thus permits the use of high resolution multilayer x-ray microscopes for producing high contrast images of carbon-based structures within the aqueous physiological environments of living cells. We report the design, fabrication and testing of multilayer optics that operate in this regime.

  17. Long-working-distance microscopic imaging in a turbid medium by use of an ultrafast optical Kerr gate.

    PubMed

    Ren, Yuhu; Tan, Wenjiang; Zheng, Yipeng; Liu, Xiaojing; Tong, Junyi

    2016-06-01

    We demonstrate a long-working-distance microscopic imaging of hidden objects in a turbid medium by use of an ultrafast optical Kerr gate (OKG). The results show that the working distance and the spatial resolution of the long-working-distance microscopic imaging system have been increased simultaneously compared with those of the conventional 4f OKG imaging systems. A compound lens consisting of a long-focus achromatic doublet and a microscope objective is used to increase the long working distance and ensure the sufficient spatial resolution. The microscopic OKG imaging system with a working distance of 245 mm and a maximal spatial resolution of approximately 7 μm has been performed. PMID:27370460

  18. Long-working-distance microscopic imaging in a turbid medium by use of an ultrafast optical Kerr gate

    NASA Astrophysics Data System (ADS)

    Ren, Yuhu; Tan, Wenjiang; Zheng, Yipeng; Liu, Xiaojing; Tong, Junyi

    2016-06-01

    We demonstrate a long-working-distance microscopic imaging of hidden objects in a turbid medium by use of an ultrafast optical Kerr gate (OKG). The results show that the working distance and the spatial resolution of the long-working-distance microscopic imaging system have been increased simultaneously compared with those of the conventional 4f OKG imaging systems. A compound lens consisting of a long-focus achromatic doublet and a microscope objective is used to increase the long working distance and ensure the sufficient spatial resolution. The microscopic OKG imaging system with a working distance of 245 mm and a maximal spatial resolution of approximately 7 μm has been performed.

  19. Optical microscope for nuclear emulsion readout: system design and results in application

    NASA Astrophysics Data System (ADS)

    Winkler, Kerstin; Koerner, Lienhard; Gussek, Peter; Balogh, Istvan; Breitfelder, Stefan; Schlichting, Johannes; Dupraz, Jean-Pierre; Fabre, Jean-Paul; Panman, Jaap; Papadopoulos, Ioannis M.; Zucchelli, Piero; van de Vyver, Bart

    1999-10-01

    Experiments such as CHORUS at CERN require the inspection of a large amount of nuclear emulsion plates exposed to particle beams. Rare events need to be found, measured and analyzed. Their features are stored as grains in microscopic dimensions in a 3D stack of plates. A new, fully automatic immersion microscope system was developed for this purpose. It features high resolution, small depth of focus, large working distance, large field of view and synchronization of illumination and detector. An additional requirement is given by variations in the refraction index and in the relative thickness of immersion oil and emulsion. The approach used here is an imaging system based on a various objective lens with extreme numerical aperture, large working distance and wide field, combined with a matched high-aperture Koehler illuminator. The light source is a mercury arc lamp, combined with a filter package for the g- line. It includes liquid crystal elements for synchronized shuttering and variable attenuation. The theoretical resolution is less than 1 micron in x, y, z within a volume of 0.5mm diameter times 1 mm scanning depth in all situations within a predefined index range. Three identical pieces of the system have been built. The identical pieces of the system have been built. The experimentally measured resolution confirms the expectations and is better than 1 micron in all three dimensions. This is the result of a complex process of system design and manufacturing, unifying optical, opto-mechanical and opto-electronical contributions. This process spans from the early stages of feasibility and manufacturing up to the test and adjustment procedures. The three prototypes are operational since the fall of 1998 in the frame of the CHORUS project. Practical experience and application results are presented.

  20. Microscopic and macroscopic modeling of femtosecond laser ablation of metals

    NASA Astrophysics Data System (ADS)

    Povarnitsyn, Mikhail E.; Fokin, Vladimir B.; Levashov, Pavel R.

    2015-12-01

    Simulation of femtosecond laser ablation of a bulk aluminum target is performed using two complementary approaches. The first method is single-fluid two-temperature hydrodynamics (HD) completed with a two-temperature equation of state (EOS). The second approach is a combination of classical molecular dynamics (MD) and a continuum model of a free electron subsystem. In both methods, an identical and accurate description of optical and transport properties of the electron subsystem is based on wide-range models reproducing effects of electron heat wave propagation, electron-phonon/ion coupling and laser energy absorption on a time-dependent profile of the dielectric function. For simulation of homogeneous nucleation in a metastable liquid phase, a kinetic model of nucleation is implemented in the HD approach. The phase diagrams of the EOS and MD potential are in good agreement that gives opportunity to compare the dynamics of laser ablation obtained by both methods directly. Results of simulation are presented in the range of incident fluences 0.1-20 J/cm2 and match well with experimental findings for an ablation crater depth. The MD accurately reproduces nonequilibrium phase transitions and takes into account surface effects on nanoscale. The HD approach demonstrates good qualitative agreement with the MD method in the dynamics of phase explosion and spallation. Other advantages and disadvantages of both approaches are examined and discussed.

  1. Label-free imaging of arterial tissues using photonic crystal fiber (PCF) based nonlinear optical microscopic system

    NASA Astrophysics Data System (ADS)

    Ko, Alex C. T.; Ridsdale, Andrew; Pegoraro, Adrian F.; Smith, Michael S. D.; Mostaço-Guidolin, Leila B.; Hewko, Mark D.; Kohlenberg, Elicia M.; Schattka, Bernie J.; Shiomi, Masashi; Stolow, Albert; Sowa, Michael G.

    2009-02-01

    Nonlinear optical (NLO) microscopy provides a minimally invasive optical method for fast molecular imaging at subcellular resolution with 3D sectioning capability in thick, highly scattering biological tissues. In the current study, we demonstrate the imaging of arterial tissue using a nonlinear optical microscope based on photonic crystal fiber and a single femto-second oscillator operating at 800nm. This NLO microscope system is capable of simultaneous imaging extracellular elastin/collagen structures and lipid distribution within aortic tissue obtained from coronary atherosclerosis-prone WHHLMI rabbits (Watanabe heritable hyperlipidemic rabbit-myocardial infarction) Clear pathological differences in arterial lumen surface were observed between healthy arterial tissue and atherosclerotic lesions through NLO imaging.

  2. Lens-free optical tomographic microscope with a large imaging volume on a chip

    PubMed Central

    Isikman, Serhan O.; Bishara, Waheb; Mavandadi, Sam; Yu, Frank W.; Feng, Steve; Lau, Randy; Ozcan, Aydogan

    2011-01-01

    We present a lens-free optical tomographic microscope, which enables imaging a large volume of approximately 15 mm3 on a chip, with a spatial resolution of < 1 μm ×  < 1 μm ×  < 3 μm in x, y and z dimensions, respectively. In this lens-free tomography modality, the sample is placed directly on a digital sensor array with, e.g., ≤ 4 mm distance to its active area. A partially coherent light source placed approximately 70 mm away from the sensor is employed to record lens-free in-line holograms of the sample from different viewing angles. At each illumination angle, multiple subpixel shifted holograms are also recorded, which are digitally processed using a pixel superresolution technique to create a single high-resolution hologram of each angular projection of the object. These superresolved holograms are digitally reconstructed for an angular range of ± 50°, which are then back-projected to compute tomograms of the sample. In order to minimize the artifacts due to limited angular range of tilted illumination, a dual-axis tomography scheme is adopted, where the light source is rotated along two orthogonal axes. Tomographic imaging performance is quantified using microbeads of different dimensions, as well as by imaging wild-type Caenorhabditis elegans. Probing a large volume with a decent 3D spatial resolution, this lens-free optical tomography platform on a chip could provide a powerful tool for high-throughput imaging applications in, e.g., cell and developmental biology. PMID:21504943

  3. Hybrid metrology co-optimization of critical dimension scanning electron microscope and optical critical dimension

    NASA Astrophysics Data System (ADS)

    Vaid, Alok; Osorio, Carmen; Tsai, Jamie; Bozdog, Cornel; Sendelbach, Matthew; Grubner, Eyal; Koret, Roy; Wolfling, Shay

    2014-10-01

    Work using the concept of a co-optimization-based metrology hybridization is presented. Hybrid co-optimization involves the combination of data from two or more metrology tools such that the output of each tool is improved by the output of the other tool. Here, the image analysis parameters from a critical dimension scanning electron microscope (CD-SEM) are modulated by the profile information from optical critical dimension (OCD, or scatterometry), while the OCD-extracted profile is concurrently optimized through addition of the CD-SEM CD results. The test vehicle utilized is the 14-nm technology node-based FinFET high-k/interfacial layer (HK/IL) structure. When compared with the nonhybrid approach, the correlation to reference measurements of the HK layer thickness measurement using hybrid co-optimization resulted in an improvement in relative accuracy of about 40% and in R2 from 0.81 to 0.91. The measurement of the IL thickness also shows an improvement with hybrid co-optimization: better matching to the expected conditions as well as data that contain less noise.

  4. Wave optics theory and 3-D deconvolution for the light field microscope

    PubMed Central

    Broxton, Michael; Grosenick, Logan; Yang, Samuel; Cohen, Noy; Andalman, Aaron; Deisseroth, Karl; Levoy, Marc

    2013-01-01

    Light field microscopy is a new technique for high-speed volumetric imaging of weakly scattering or fluorescent specimens. It employs an array of microlenses to trade off spatial resolution against angular resolution, thereby allowing a 4-D light field to be captured using a single photographic exposure without the need for scanning. The recorded light field can then be used to computationally reconstruct a full volume. In this paper, we present an optical model for light field microscopy based on wave optics, instead of previously reported ray optics models. We also present a 3-D deconvolution method for light field microscopy that is able to reconstruct volumes at higher spatial resolution, and with better optical sectioning, than previously reported. To accomplish this, we take advantage of the dense spatio-angular sampling provided by a microlens array at axial positions away from the native object plane. This dense sampling permits us to decode aliasing present in the light field to reconstruct high-frequency information. We formulate our method as an inverse problem for reconstructing the 3-D volume, which we solve using a GPU-accelerated iterative algorithm. Theoretical limits on the depth-dependent lateral resolution of the reconstructed volumes are derived. We show that these limits are in good agreement with experimental results on a standard USAF 1951 resolution target. Finally, we present 3-D reconstructions of pollen grains that demonstrate the improvements in fidelity made possible by our method. PMID:24150383

  5. Modelling and simulation of the space mission MICROSCOPE

    NASA Astrophysics Data System (ADS)

    Bremer, Stefanie; List, Meike; Selig, Hanns; Rath, Hans; Dittus, Hansjörg

    2011-01-01

    MICROSCOPE is a French space mission for testing the weak equivalence principle (WEP). The mission goal is the determination of the Eötvös parameter η with an accuracy of 10 -15. The French space agency CNES is responsible for the satellite which is developed and produced within the Myriade series. The satellite's payload T-SAGE (Twin Space Accelerometer for Gravitation Experimentation) is developed and built by the French institute ONERA. It consists of two high-precision capacitive differential accelerometers. One accelerometer is used as reference sensor with two test masses of platinum, the science sensor contains a platinum and a titanium proof mass. The detection of the test mass movement and their control is done via a complex electrode system. As a member of the MICROSCOPE performance team, the German department ZARM will be involved in the data analysis of the MICROSCOPE mission. For this purpose, mission simulations and the preparation of the mission data evaluation in close cooperation with the French partners CNES, ONERA and OCA are realised. The development status of the simulation tool which will represent the complex spacecraft dynamics and all error sources in order to design and test data reduction procedures is presented and some features are discussed in detail.

  6. Huxley's Model for Muscle Contraction Revisited: The Importance of Microscopic Reversibility.

    PubMed

    Astumian, R Dean

    2015-01-01

    Andrew Huxley's model for muscle contraction is the first mechanistic description of how an energy-providing chemical reaction, ATP hydrolysis, can be coupled by a molecule (myosin) to do work in the environment in a cyclic process. The model was originally used to fit experimentally obtained force vs velocity curves, and has served as a paradigm for understanding mechanochemical coupling ever since. Despite the remarkable success in fitting kinetic data, Huxley's model is thermodynamically inconsistent in several regards, most notably in its failure to include thermal noise in the description of the mechanical transitions by which motion occurs. This inconsistency has led subsequent workers to incorrect conclusions regarding the importance of mechanical transitions for determining the direction of motion, the efficiency of energy conversion, the ratio of forward to backward steps, and the applied force necessary to stop the motion of chemically driven molecular motors. In this chapter an extension of Huxley's model is described where the principle of microscopic reversibility provides a framework for developing a thermodynamically consistent description of a molecular machine. The results show clearly that mechanical strain and the so-called "power stroke" are irrelevant for determining the directionality and thermodynamic properties of any chemically driven molecular motor. Instead these properties are controlled entirely by the chemical specificity that describes how the relative rates of the ATP hydrolysis reaction depend, by allosteric interactions, on the mechanical state of the molecule. This mechanism has been termed an "information ratchet" in the literature. In contrast to the results for chemical driving, a power stroke can be a key component for the operation of an optically driven motor, the transitions of which do not obey microscopic reversibility. PMID:26122749

  7. Development and optical testing of the camera, hand lens, and microscope probe with scannable laser spectroscopy (CHAMP-SLS)

    NASA Astrophysics Data System (ADS)

    Mungas, Greg S.; Gürsel, Yekta; Sepulveda, Cesar A.; Anderson, Mark; La Baw, Clayton; Johnson, Kenneth R.; Deans, Matthew; Beegle, Luther; Boynton, John

    2008-08-01

    Conducting high resolution field microscopy with coupled laser spectroscopy that can be used to selectively analyze the surface chemistry of individual pixels in a scene is an enabling capability for next generation robotic and manned spaceflight missions, civil, and military applications. In the laboratory, we use a range of imaging and surface preparation tools that provide us with in-focus images, context imaging for identifying features that we want to investigate at high magnification, and surface-optical coupling that allows us to apply optical spectroscopic analysis techniques for analyzing surface chemistry particularly at high magnifications. The camera, handlens, and microscope probe with scannable laser spectroscopy (CHAMP-SLS) is an imaging/spectroscopy instrument capable of imaging continuously from infinity down to high resolution microscopy (resolution of ~1 micron/pixel in a final camera format), the closer CHAMP-SLS is placed to a feature, the higher the resultant magnification. At hand lens to microscopic magnifications, the imaged scene can be selectively interrogated with point spectroscopic techniques such as Raman spectroscopy, microscopic Laser Induced Breakdown Spectroscopy (micro-LIBS), laser ablation mass-spectrometry, Fluorescence spectroscopy, and/or Reflectance spectroscopy. This paper summarizes the optical design, development, and testing of the CHAMP-SLS optics.

  8. Development and Optical Testing of the Camera, Hand Lens, and Microscope Probe with Scannable Laser Spectroscopy (CHAMP-SLS)

    NASA Technical Reports Server (NTRS)

    Mungas, Greg S.; Gursel, Yekta; Sepulveda, Cesar A.; Anderson, Mark; La Baw, Clayton; Johnson, Kenneth R.; Deans, Matthew; Beegle, Luther; Boynton, John

    2008-01-01

    Conducting high resolution field microscopy with coupled laser spectroscopy that can be used to selectively analyze the surface chemistry of individual pixels in a scene is an enabling capability for next generation robotic and manned spaceflight missions, civil, and military applications. In the laboratory, we use a range of imaging and surface preparation tools that provide us with in-focus images, context imaging for identifying features that we want to investigate at high magnification, and surface-optical coupling that allows us to apply optical spectroscopic analysis techniques for analyzing surface chemistry particularly at high magnifications. The camera, hand lens, and microscope probe with scannable laser spectroscopy (CHAMP-SLS) is an imaging/spectroscopy instrument capable of imaging continuously from infinity down to high resolution microscopy (resolution of approx. 1 micron/pixel in a final camera format), the closer CHAMP-SLS is placed to a feature, the higher the resultant magnification. At hand lens to microscopic magnifications, the imaged scene can be selectively interrogated with point spectroscopic techniques such as Raman spectroscopy, microscopic Laser Induced Breakdown Spectroscopy (micro-LIBS), laser ablation mass-spectrometry, Fluorescence spectroscopy, and/or Reflectance spectroscopy. This paper summarizes the optical design, development, and testing of the CHAMP-SLS optics.

  9. Analysis of Zebrafish Kidney Development with Time-lapse Imaging Using a Dissecting Microscope Equipped for Optical Sectioning

    PubMed Central

    Perner, Birgit; Schnerwitzki, Danny; Graf, Michael; Englert, Christoph

    2016-01-01

    In order to understand organogenesis, the spatial and temporal alterations that occur during development of tissues need to be recorded. The method described here allows time-lapse analysis of normal and impaired kidney development in zebrafish embryos by using a fluorescence dissecting microscope equipped for structured illumination and z-stack acquisition. To visualize nephrogenesis, transgenic zebrafish (Tg(wt1b:GFP)) with fluorescently labeled kidney structures were used. Renal defects were triggered by injection of an antisense morpholino oligonucleotide against the Wilms tumor gene wt1a, a factor known to be crucial for kidney development. The advantage of the experimental setup is the combination of a zoom microscope with simple strategies for re-adjusting movements in x, y or z direction without additional equipment. To circumvent focal drift that is induced by temperature variations and mechanical vibrations, an autofocus strategy was applied instead of utilizing a usually required environmental chamber. In order to re-adjust the positional changes due to a xy-drift, imaging chambers with imprinted relocation grids were employed. In comparison to more complex setups for time-lapse recording with optical sectioning such as confocal laser scanning or light sheet microscopes, a zoom microscope is easy to handle. Besides, it offers dissecting microscope-specific benefits such as high depth of field and an extended working distance. The method to study organogenesis presented here can also be used with fluorescence stereo microscopes not capable of optical sectioning. Although limited for high-throughput, this technique offers an alternative to more complex equipment that is normally used for time-lapse recording of developing tissues and organ dynamics. PMID:27078207

  10. Analysis of Zebrafish Kidney Development with Time-lapse Imaging Using a Dissecting Microscope Equipped for Optical Sectioning.

    PubMed

    Perner, Birgit; Schnerwitzki, Danny; Graf, Michael; Englert, Christoph

    2016-01-01

    In order to understand organogenesis, the spatial and temporal alterations that occur during development of tissues need to be recorded. The method described here allows time-lapse analysis of normal and impaired kidney development in zebrafish embryos by using a fluorescence dissecting microscope equipped for structured illumination and z-stack acquisition. To visualize nephrogenesis, transgenic zebrafish (Tg(wt1b:GFP)) with fluorescently labeled kidney structures were used. Renal defects were triggered by injection of an antisense morpholino oligonucleotide against the Wilms tumor gene wt1a, a factor known to be crucial for kidney development. The advantage of the experimental setup is the combination of a zoom microscope with simple strategies for re-adjusting movements in x, y or z direction without additional equipment. To circumvent focal drift that is induced by temperature variations and mechanical vibrations, an autofocus strategy was applied instead of utilizing a usually required environmental chamber. In order to re-adjust the positional changes due to a xy-drift, imaging chambers with imprinted relocation grids were employed. In comparison to more complex setups for time-lapse recording with optical sectioning such as confocal laser scanning or light sheet microscopes, a zoom microscope is easy to handle. Besides, it offers dissecting microscope-specific benefits such as high depth of field and an extended working distance. The method to study organogenesis presented here can also be used with fluorescence stereo microscopes not capable of optical sectioning. Although limited for high-throughput, this technique offers an alternative to more complex equipment that is normally used for time-lapse recording of developing tissues and organ dynamics. PMID:27078207

  11. Predictions for RHIC: Critical Overview of Microscopic Models

    NASA Astrophysics Data System (ADS)

    Gyulassy, Miklos

    1998-10-01

    The first measurements of inverse alchemy (Au+Auarrow; ?) at E_cm=200 AGeV will begin next year at RHIC. Some theorists are sticking their necks out to predicthadronic observables in this unknown energy domain, rather than fit fireballs to data as is popular at SPS. I will focus on the key uncertain assumptions and dynamical elements in current microscopic event generators and hadronic/partonic transport codes which are likely to cause neck aches next year. Topics will include entropy production and transverse energy systematics, baryon stopping, and flavor equilibration.

  12. In-situ optical transmission electron microscope study of exciton phonon replicas in ZnO nanowires by cathodoluminescence

    SciTech Connect

    Yang, Shize; Tian, Xuezeng; Wang, Lifen; Wei, Jiake; Qi, Kuo; Li, Xiaomin; Xu, Zhi E-mail: xdbai@iphy.ac.cn Wang, Wenlong; Zhao, Jimin; Bai, Xuedong E-mail: xdbai@iphy.ac.cn; Wang, Enge E-mail: xdbai@iphy.ac.cn

    2014-08-18

    The cathodoluminescence spectrum of single zinc oxide (ZnO) nanowires is measured by in-situ optical Transmission Electron Microscope. The coupling between exciton and longitudinal optical phonon is studied. The band edge emission varies for different excitation spots. This effect is attributed to the exciton propagation along the c axis of the nanowire. Contrary to free exciton emission, the phonon replicas are well confined in ZnO nanowire. They travel along the c axis and emit at the end surface. Bending strain increases the relative intensity of second order phonon replicas when excitons travel along the c-axis.

  13. Measurement of anchoring coefficient of homeotropically aligned nematic liquid crystal using a polarizing optical microscope in reflective mode

    NASA Astrophysics Data System (ADS)

    Baek, Sang-In; Kim, Sung-Jo; Kim, Jong-Hyun

    2015-09-01

    Although the homeotropic alignment of liquid crystals is widely used in LCD TVs, no easy method exists to measure its anchoring coefficient. In this study, we propose an easy and convenient measurement technique in which a polarizing optical microscope is used in the reflective mode with an objective lens having a low depth of focus. All measurements focus on the reflection of light near the interface between the liquid crystal and alignment layer. The change in the reflected light is measured by applying an electric field. We model the response of the director of the liquid crystal to the electric field and, thus, the change in reflectance. By adjusting the extrapolation length in the calculation, we match the experimental and calculated results and obtain the anchoring coefficient. In our experiment, the extrapolation lengths were 0.31 ± 0.04 μm, 0.32 ± 0.08 μm, and 0.23 ± 0.05 μm for lecithin, AL-64168, and SE-5662, respectively.

  14. Dual-modal three-dimensional imaging of single cells with isometric high resolution using an optical projection tomography microscope

    NASA Astrophysics Data System (ADS)

    Miao, Qin; Rahn, J. Richard; Tourovskaia, Anna; Meyer, Michael G.; Neumann, Thomas; Nelson, Alan C.; Seibel, Eric J.

    2009-11-01

    The practice of clinical cytology relies on bright-field microscopy using absorption dyes like hematoxylin and eosin in the transmission mode, while the practice of research microscopy relies on fluorescence microscopy in the epi-illumination mode. The optical projection tomography microscope is an optical microscope that can generate 3-D images of single cells with isometric high resolution both in absorption and fluorescence mode. Although the depth of field of the microscope objective is in the submicron range, it can be extended by scanning the objective's focal plane. The extended depth of field image is similar to a projection in a conventional x-ray computed tomography. Cells suspended in optical gel flow through a custom-designed microcapillary. Multiple pseudoprojection images are taken by rotating the microcapillary. After these pseudoprojection images are further aligned, computed tomography methods are applied to create 3-D reconstruction. 3-D reconstructed images of single cells are shown in both absorption and fluorescence mode. Fluorescence spatial resolution is measured at 0.35 μm in both axial and lateral dimensions. Since fluorescence and absorption images are taken in two different rotations, mechanical error may cause misalignment of 3-D images. This mechanical error is estimated to be within the resolution of the system.

  15. Electron microscopic studies of macrophages in Wallerian degeneration of rat optic nerve after intravenous injection of colloidal carbon.

    PubMed Central

    Ling, E A

    1978-01-01

    The origin of macrophages in the degenerating optic nerve of rats after eye enucleation was investigated electron microscopically following intravenous labelling of mononuclear leucoytes with colloidal carbon. In the various post-operative periods studied carbon-labelled macrophages were seen at the site of lesion. At 4 and 7 days after enucleation carbon-labelled cells were seen at the site of Wallerian degeneration of the optic nerve over 4 mm distal to the site of the lesion. In the electron microscope these cells showed a flattened nucleus bearing coarse chromatin clumps, their cytoplasm contained a prominent Golgi complex and long isolate profiles of rough endoplasmic reticulum. Clusters of carbon particles in the cytoplasms were membrane-bound. Lysosomal bodies embedded with carbon particles were also observed. In relation to the blood vessels of the optic nerve, endothelial cells and pericytes with ingested carbon were seen. Macrophages in the meninges covering the optic nerve were also labelled. The results suggest that some macrophages in the region of Wallerian degeneration in the optic nerve, as well as those at the actual site of the lesion, were transformed blood leucocytes. Images Fig. 1 Fig. 2 Fig. 3 Fig. 4 Fig. 5 Fig. 6 Fig. 7 Fig. 8 Fig. 9 Fig. 10 Fig. 11 PMID:649492

  16. Microscopic reversibility and macroscopic irreversibility: A lattice gas model

    NASA Astrophysics Data System (ADS)

    Pérez-Cárdenas, Fernando C.; Resca, Lorenzo; Pegg, Ian L.

    2016-09-01

    We present coarse-grained descriptions and computations of the time evolution of a lattice gas system of indistinguishable particles, whose microscopic laws of motion are exactly reversible, in order to investigate how or what kind of macroscopically irreversible behavior may eventually arise. With increasing coarse-graining and number of particles, relative fluctuations of entropy rapidly decrease and apparently irreversible behavior unfolds. Although that behavior becomes typical in those limits and within a certain range, it is never absolutely irreversible for any individual system with specific initial conditions. Irreversible behavior may arise in various ways. We illustrate one possibility by replacing detailed integer occupation numbers at lattice sites with particle probability densities that evolve diffusively.

  17. An evaluation of a combined scanning probe and optical microscope for lunar regolith studies

    NASA Astrophysics Data System (ADS)

    Yang, S.; Pike, W. T.; Staufer, U.; Claus, D.; Rodenburg, J. M.

    2011-12-01

    The microscopic properties of the lunar regolith such as the shape, the surface texture and the size distribution are required for an understanding of both past surface processes and potential hazards for future human exploration [1]. To reveal the particle morphology at the sub micrometer scale, scanning-probe microscopy (SPM), first used on the 2008 Phoenix mission [1], is a proven approach; however, there are two main challenges for the measurement of lunar particles. Firstly, the SPM tip is liable to move particles during scanning, even when using the lower contact forces of the dynamic-mode imaging. Hence the particles need to be stabilised during imaging. Secondly, typically the AFM tip extends about 10 μm from its cantilever, so larger particles protruding more than this height above their substrates cannot be scanned completely. To immobilize particles and eliminate large particles during SPM scanning, micromachined Si substrates, which have been successfully applied in the Phoenix project for Mars investigation in 2008 [2], have been investigated for lunar analogue material. On these substrates micrometer pits are patterned and serve as traps to enhance the stability of the AFM scanning by grasping the particles. In addition, the diameter of pits can determine the size of dusts to be captured and reduce the adhesion for the larger dust and so eliminate the oversized particles. To extend the imaging range and assist in selecting scan areas for the SPM, we use a type of lensless optical imaging (LOM) which uses ptychographic diffractive imaging [3] to eliminate the restrictions and performance limitations of conventional focusing devices. As a reference, scanning electron microscopy (SEM) which minimizes particle-probe interactions and has the advantage of an extended depth of field, is employed to image the same particle fields at resolutions covering both the SPM and LOM. By comparing the differences and the similarities between SEM and LOM images, the

  18. Acoustic Models of Optical Mirrors

    ERIC Educational Resources Information Center

    Mayer, V. V.; Varaksina, E. I.

    2014-01-01

    Students form a more exact idea of the action of optical mirrors if they can observe the wave field being formed during reflection. For this purpose it is possible to organize model experiments with flexural waves propagating in thin elastic plates. The direct and round edges of the plates are used as models of plane, convex and concave mirrors.…

  19. Optical-Microphysical Cirrus Model

    NASA Technical Reports Server (NTRS)

    Reichardt, J.; Reichardt, S.; Lin, R.-F.; Hess, M.; McGee, T. J.; Starr, D. O.

    2008-01-01

    A model is presented that permits the simulation of the optical properties of cirrus clouds as measured with depolarization Raman lidars. It comprises a one-dimensional cirrus model with explicit microphysics and an optical module that transforms the microphysical model output to cloud and particle optical properties. The optical model takes into account scattering by randomly oriented or horizontally aligned planar and columnar monocrystals and polycrystals. Key cloud properties such as the fraction of plate-like particles and the number of basic crystals per polycrystal are parameterized in terms of the ambient temperature, the nucleation temperature, or the mass of the particles. The optical-microphysical model is used to simulate the lidar measurement of a synoptically forced cirrostratus in a first case study. It turns out that a cirrus cloud consisting of only monocrystals in random orientation is too simple a model scenario to explain the observations. However, good agreement between simulation and observation is reached when the formation of polycrystals or the horizontal alignment of monocrystals is permitted. Moreover, the model results show that plate fraction and morphological complexity are best parameterized in terms of particle mass, or ambient temperature which indicates that the ambient conditions affect cirrus optical properties more than those during particle formation. Furthermore, the modeled profiles of particle shape and size are in excellent agreement with in situ and laboratory studies, i.e., (partly oriented) polycrystalline particles with mainly planar basic crystals in the cloud bottom layer, and monocrystals above, with the fraction of columns increasing and the shape and size of the particles changing from large thin plates and long columns to small, more isometric crystals from cloud center to top. The findings of this case study corroborate the microphysical interpretation of cirrus measurements with lidar as suggested previously.

  20. Design and Development of a Microscopic Model for Polarization

    ERIC Educational Resources Information Center

    Petridou, E.; Psillos, D.; Hatzikraniotis, E.; Viiri, J.

    2009-01-01

    As research shows that the knowledge and use of models and modelling by teachers is limited, particularly for predicting phenomena, we developed and applied a sequence of three representations of a simulated model focusing on polarization and specifically showing the behaviour of an atom, and forces exerted on a dipole and an insulator, when a…

  1. Resolution of 90 nm (lambda/5) in an optical transmission microscope with an annular condenser.

    PubMed

    Vainrub, Arnold; Pustovyy, Oleg; Vodyanoy, Vitaly

    2006-10-01

    Resolution of 90 nm was achieved with a research microscope simply by replacing the standard bright-field condenser with a homebuilt illumination system with a cardioid annular condenser. Diffraction gratings with 100 nm width lines as well as less than 100 nm size features of different-shaped objects were clearly visible on a calibrated microscope test slide. The resolution increase results from a known narrower diffraction pattern in coherent illumination for the annular aperture compared with the circular aperture. This explanation is supported by an excellent accord of calculated and measured diffraction patterns for a 50 nm radius disk. PMID:16969401

  2. Resolution of 90 nm (λ/5) in an optical transmission microscope with an annular condenser

    NASA Astrophysics Data System (ADS)

    Vainrub, Arnold; Pustovyy, Oleg; Vodyanoy, Vitaly

    2006-10-01

    Resolution of 90 nm was achieved with a research microscope simply by replacing the standard bright-field condenser with a homebuilt illumination system with a cardioid annular condenser. Diffraction gratings with 100 nm width lines as well as less than 100 nm size features of different-shaped objects were clearly visible on a calibrated microscope test slide. The resolution increase results from a known narrower diffraction pattern in coherent illumination for the annular aperture compared with the circular aperture. This explanation is supported by an excellent accord of calculated and measured diffraction patterns for a 50 nm radius disk.

  3. Model based control of dynamic atomic force microscope

    SciTech Connect

    Lee, Chibum; Salapaka, Srinivasa M.

    2015-04-15

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H{sub ∞} control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  4. Model based control of dynamic atomic force microscope.

    PubMed

    Lee, Chibum; Salapaka, Srinivasa M

    2015-04-01

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H(∞) control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments. PMID:25933864

  5. Microscopic pressure-cooker model for studying molecules in confinement

    NASA Astrophysics Data System (ADS)

    Santamaria, Ruben; Adamowicz, Ludwik; Rosas-Acevedo, Hortensia

    2015-04-01

    A model for a system of a finite number of molecules in confinement is presented and expressions for determining the temperature, pressure, and volume of the system are derived. The present model is a generalisation of the Zwanzig-Langevin model because it includes pressure effects in the system. It also has general validity, preserves the ergodic hypothesis, and provides a formal framework for previous studies of hydrogen clusters in confinement. The application of the model is illustrated by an investigation of a set of prebiotic compounds exposed to varying pressure and temperature. The simulations performed within the model involve the use of a combination of molecular dynamics and density functional theory methods implemented on a computer system with a mixed CPU-GPU architecture.

  6. Chronic monitoring of cortical hemodynamics in behaving, freely-moving rats using a miniaturized head-mounted optical microscope

    NASA Astrophysics Data System (ADS)

    Sigal, Iliya; Gad, Raanan; Koletar, Margaret; Ringuette, Dene; Stefanovic, Bojana; Levi, Ofer

    2016-03-01

    Growing interest within the neurophysiology community in assessing healthy and pathological brain activity in animals that are awake and freely-behaving has triggered the need for optical systems that are suitable for such longitudinal studies. In this work we report label-free multi-modal imaging of cortical hemodynamics in the somatosensory cortex of awake, freely-behaving rats, using a novel head-mounted miniature optical microscope. The microscope employs vertical cavity surface emitting lasers (VCSELs) at three distinct wavelengths (680 nm, 795 nm, and 850 nm) to provide measurements of four hemodynamic markers: blood flow speeds, HbO, HbR, and total Hb concentration, across a > 2 mm field of view. Blood flow speeds are extracted using Laser Speckle Contrast Imaging (LSCI), while oxygenation measurements are performed using Intrinsic Optical Signal Imaging (IOSI). Longitudinal measurements on the same animal are made possible over the course of > 6 weeks using a chronic window that is surgically implanted into the skull. We use the device to examine changes in blood flow and blood oxygenation in superficial cortical blood vessels and tissue in response to drug-induced absence-like seizures, correlating motor behavior with changes in blood flow and blood oxygenation in the brain.

  7. Dynamic nano-imaging of label-free living cells using electron beam excitation-assisted optical microscope

    NASA Astrophysics Data System (ADS)

    Fukuta, Masahiro; Kanamori, Satoshi; Furukawa, Taichi; Nawa, Yasunori; Inami, Wataru; Lin, Sheng; Kawata, Yoshimasa; Terakawa, Susumu

    2015-11-01

    Optical microscopes are effective tools for cellular function analysis because biological cells can be observed non-destructively and non-invasively in the living state in either water or atmosphere condition. Label-free optical imaging technique such as phase-contrast microscopy has been analysed many cellular functions, and it is essential technology for bioscience field. However, the diffraction limit of light makes it is difficult to image nano-structures in a label-free living cell, for example the endoplasmic reticulum, the Golgi body and the localization of proteins. Here we demonstrate the dynamic imaging of a label-free cell with high spatial resolution by using an electron beam excitation-assisted optical (EXA) microscope. We observed the dynamic movement of the nucleus and nano-scale granules in living cells with better than 100 nm spatial resolution and a signal-to-noise ratio (SNR) around 10. Our results contribute to the development of cellular function analysis and open up new bioscience applications.

  8. Trapping and two-photon fluorescence excitation of microscopic objects using ultrafast single-fiber optical tweezers

    NASA Astrophysics Data System (ADS)

    Mishra, Yogeshwar N.; Ingle, Ninad; Mohanty, Samarendra K.

    2011-10-01

    Analysis of trapped microscopic objects using fluorescence and Raman spectroscopy is gaining considerable interest. We report on the development of single fiber ultrafast optical tweezers and its use in simultaneous two-photon fluorescence (TPF) excitation of trapped fluorescent microscopic objects. Using this method, trapping depth of a few centimeters was achieved inside a colloidal sample with TPF from the trapped particle being visible to the naked eye. Owing to the propagation distance of the Bessel-like beam emerging from the axicon-fiber tip, a relatively longer streak of fluorescence was observed along the microsphere length. The cone angle of the axicon was engineered so as to provide better trapping stability and high axial confinement of TPF. Trapping of the floating objects led to stable fluorescence emission intensity over a long period of time, suitable for spectroscopic measurements. Furthermore, the stability of the fiber optic trapping was confirmed by holding and maneuvering the fiber by hand so as to move the trapped fluorescent particle in three dimensions. Apart from miniaturization capability into lab-on-a-chip microfluidic devices, the proposed noninvasive microaxicon tipped optical fiber can be used in multifunctional mode for in-depth trapping, rotation, sorting, and ablation, as well as for two-photon fluorescence excitation of a motile sample.

  9. Microscopic Simulation and Macroscopic Modeling for Thermal and Chemical Non-Equilibrium

    NASA Technical Reports Server (NTRS)

    Liu, Yen; Panesi, Marco; Vinokur, Marcel; Clarke, Peter

    2013-01-01

    This paper deals with the accurate microscopic simulation and macroscopic modeling of extreme non-equilibrium phenomena, such as encountered during hypersonic entry into a planetary atmosphere. The state-to-state microscopic equations involving internal excitation, de-excitation, dissociation, and recombination of nitrogen molecules due to collisions with nitrogen atoms are solved time-accurately. Strategies to increase the numerical efficiency are discussed. The problem is then modeled using a few macroscopic variables. The model is based on reconstructions of the state distribution function using the maximum entropy principle. The internal energy space is subdivided into multiple groups in order to better describe the non-equilibrium gases. The method of weighted residuals is applied to the microscopic equations to obtain macroscopic moment equations and rate coefficients. The modeling is completely physics-based, and its accuracy depends only on the assumed expression of the state distribution function and the number of groups used. The model makes no assumption at the microscopic level, and all possible collisional and radiative processes are allowed. The model is applicable to both atoms and molecules and their ions. Several limiting cases are presented to show that the model recovers the classical twotemperature models if all states are in one group and the model reduces to the microscopic equations if each group contains only one state. Numerical examples and model validations are carried out for both the uniform and linear distributions. Results show that the original over nine thousand microscopic equations can be reduced to 2 macroscopic equations using 1 to 5 groups with excellent agreement. The computer time is decreased from 18 hours to less than 1 second.

  10. Model-independent quantitative measurement of nanomechanical oscillator vibrations using electron-microscope linescans

    NASA Astrophysics Data System (ADS)

    Wang, Huan; Fenton, J. C.; Chiatti, O.; Warburton, P. A.

    2013-07-01

    Nanoscale mechanical resonators are highly sensitive devices and, therefore, for application as highly sensitive mass balances, they are potentially superior to micromachined cantilevers. The absolute measurement of nanoscale displacements of such resonators remains a challenge, however, since the optical signal reflected from a cantilever whose dimensions are sub-wavelength is at best very weak. We describe a technique for quantitative analysis and fitting of scanning-electron microscope (SEM) linescans across a cantilever resonator, involving deconvolution from the vibrating resonator profile using the stationary resonator profile. This enables determination of the absolute amplitude of nanomechanical cantilever oscillations even when the oscillation amplitude is much smaller than the cantilever width. This technique is independent of any model of secondary-electron emission from the resonator and is, therefore, applicable to resonators with arbitrary geometry and material inhomogeneity. We demonstrate the technique using focussed-ion-beam-deposited tungsten cantilevers of radius ˜60-170 nm inside a field-emission SEM, with excitation of the cantilever by a piezoelectric actuator allowing measurement of the full frequency response. Oscillation amplitudes approaching the size of the primary electron-beam can be resolved. We further show that the optimum electron-beam scan speed is determined by a compromise between deflection of the cantilever at low scan speeds and limited spatial resolution at high scan speeds. Our technique will be an important tool for use in precise characterization of nanomechanical resonator devices.

  11. Model-independent quantitative measurement of nanomechanical oscillator vibrations using electron-microscope linescans.

    PubMed

    Wang, Huan; Fenton, J C; Chiatti, O; Warburton, P A

    2013-07-01

    Nanoscale mechanical resonators are highly sensitive devices and, therefore, for application as highly sensitive mass balances, they are potentially superior to micromachined cantilevers. The absolute measurement of nanoscale displacements of such resonators remains a challenge, however, since the optical signal reflected from a cantilever whose dimensions are sub-wavelength is at best very weak. We describe a technique for quantitative analysis and fitting of scanning-electron microscope (SEM) linescans across a cantilever resonator, involving deconvolution from the vibrating resonator profile using the stationary resonator profile. This enables determination of the absolute amplitude of nanomechanical cantilever oscillations even when the oscillation amplitude is much smaller than the cantilever width. This technique is independent of any model of secondary-electron emission from the resonator and is, therefore, applicable to resonators with arbitrary geometry and material inhomogeneity. We demonstrate the technique using focussed-ion-beam-deposited tungsten cantilevers of radius ~60-170 nm inside a field-emission SEM, with excitation of the cantilever by a piezoelectric actuator allowing measurement of the full frequency response. Oscillation amplitudes approaching the size of the primary electron-beam can be resolved. We further show that the optimum electron-beam scan speed is determined by a compromise between deflection of the cantilever at low scan speeds and limited spatial resolution at high scan speeds. Our technique will be an important tool for use in precise characterization of nanomechanical resonator devices. PMID:23902094

  12. Model-independent quantitative measurement of nanomechanical oscillator vibrations using electron-microscope linescans

    SciTech Connect

    Wang, Huan; Fenton, J. C.; Chiatti, O.; Warburton, P. A.

    2013-07-15

    Nanoscale mechanical resonators are highly sensitive devices and, therefore, for application as highly sensitive mass balances, they are potentially superior to micromachined cantilevers. The absolute measurement of nanoscale displacements of such resonators remains a challenge, however, since the optical signal reflected from a cantilever whose dimensions are sub-wavelength is at best very weak. We describe a technique for quantitative analysis and fitting of scanning-electron microscope (SEM) linescans across a cantilever resonator, involving deconvolution from the vibrating resonator profile using the stationary resonator profile. This enables determination of the absolute amplitude of nanomechanical cantilever oscillations even when the oscillation amplitude is much smaller than the cantilever width. This technique is independent of any model of secondary-electron emission from the resonator and is, therefore, applicable to resonators with arbitrary geometry and material inhomogeneity. We demonstrate the technique using focussed-ion-beam–deposited tungsten cantilevers of radius ∼60–170 nm inside a field-emission SEM, with excitation of the cantilever by a piezoelectric actuator allowing measurement of the full frequency response. Oscillation amplitudes approaching the size of the primary electron-beam can be resolved. We further show that the optimum electron-beam scan speed is determined by a compromise between deflection of the cantilever at low scan speeds and limited spatial resolution at high scan speeds. Our technique will be an important tool for use in precise characterization of nanomechanical resonator devices.

  13. Quantification of microscopic surface features of single point diamond turned optics with subsequent chemical polishing

    NASA Astrophysics Data System (ADS)

    Cardenas, Nelson; Kyrish, Matthew; Taylor, Daniel; Fraelich, Margaret; Lechuga, Oscar; Claytor, Richard; Claytor, Nelson

    2015-03-01

    Electro-Chemical Polishing is routinely used in the anodizing industry to achieve specular surface finishes of various metals products prior to anodizing. Electro-Chemical polishing functions by leveling the microscopic peaks and valleys of the substrate, thereby increasing specularity and reducing light scattering. The rate of attack is dependent of the physical characteristics (height, depth, and width) of the microscopic structures that constitute the surface finish. To prepare the sample, mechanical polishing such as buffing or grinding is typically required before etching. This type of mechanical polishing produces random microscopic structures at varying depths and widths, thus the electropolishing parameters are determined in an ad hoc basis. Alternatively, single point diamond turning offers excellent repeatability and highly specific control of substrate polishing parameters. While polishing, the diamond tool leaves behind an associated tool mark, which is related to the diamond tool geometry and machining parameters. Machine parameters such as tool cutting depth, speed and step over can be changed in situ, thus providing control of the spatial frequency of the microscopic structures characteristic of the surface topography of the substrate. By combining single point diamond turning with subsequent electro-chemical etching, ultra smooth polishing of both rotationally symmetric and free form mirrors and molds is possible. Additionally, machining parameters can be set to optimize post polishing for increased surface quality and reduced processing times. In this work, we present a study of substrate surface finish based on diamond turning tool mark spatial frequency with subsequent electro-chemical polishing.

  14. Dark-gray soliton transformations: possibility to study microscopic quantum phenomena by nonlinear optical methods

    NASA Astrophysics Data System (ADS)

    Hernández-Tenorio, C.; Serkin, V. N.; Belyaeva, T. L.; Peña-Moreno, R.; Morales-Lara, L.

    2015-01-01

    The nonlinear Schrödinger equation (NLSE) model with an external harmonic potential is one of the most important in modern science. This model makes it possible to analyze a variety of nonlinear phenomena, in nonlinear optics and laser physics, biophysics and in the theory of Bose-Einstein condensation of atoms. It is shown that the main specific feature of the dynamics of dark GP matter wave solitons in a parabolic trap is the formation of solitons with dynamically changing form-factors producing the periodic variation in the modulation depth (the degree of "blackness") of dark solitons. In general, the period of dark soliton oscillations in trapping potential depends on the specific conditions of the experiment and does not coincide with the oscillation period of a linear quantum-mechanical oscillator. In the case of an immobile pedestal in the trap, the oscillation period of the black soliton considerably increases because of the periodic transformation of the black soliton to the gray one and vice versa. Surprisingly, that if the dark soliton is superimposed on the base pedestal oscillating in the trap and displaced from the trap center, the oscillation period of the dark soliton coincides with the period of oscillations of the linear harmonic oscillator, while the dynamics of the dark soliton is similar to that of a classical particle obeying the Newton mechanics laws.

  15. Development of new apertureless near-field scanning optical microscope tip using finite-differential time-domain calculation

    NASA Astrophysics Data System (ADS)

    Kodama, Takashi; Ohtani, Hiroyuki

    2006-12-01

    We calculated the electric field enhancement factor of the apertureless near-field scanning optical microscope (ANSOM) tip using the finite-differential time-domain method. The results revealed that the enhancement factor of the silver tip remarkably decreased as the rounded tip radius increased. On the other hand, aggregated silver nanoparticles resulted in a strong field enhancement. Therefore, we developed a silver nanoparticles immobilized tip for the ANSOM probe and attempted to measure the surface enhanced Raman scattering spectrum of carbon onion molecules using it. We successfully detected the Raman spectra of individual carbon onions with a high sensitivity.

  16. Improvement of tapping-mode scanning near-field optical microscope

    NASA Astrophysics Data System (ADS)

    Zhuo, Wenjiang; Li, Qin; Sun, Jialin; Xu, Jianhua; Zhao, Jun; Guo, Jihua

    2000-10-01

    The commercial crystal tuning fork glued with an optical fiber probe is used as the sensitive detecting element for the tapping-mode scanning near-field optical microscopy. Firstly, the single-mode optical fiber is etched down to a small diameter to decrease the burden of the tuning fork. Secondary, the fiber is etched for the second time to form the sharp tip with large cone angle. Thirdly, the fiber probe, with nanometric tip and high light throughput, is glued to tuning fork by Cyanoacrylate Adhesive. The measured quality factor, Q, of the tuning fork/optical fiber probe assembly prepared in this way is higher than 300. The optical signal is modulated to the frequency of the tuning fork by optical fiber probe as it is detecting the topography of sample. The high-resolution of the tapping- mode detector is proved by imaging the topography of the grating and biological cell.

  17. A Microscopic Transport Model for Synthesis of Superheavy Nuclei

    SciTech Connect

    Zhang Fengshou; Feng Zhaoqing; Jin Genming

    2006-11-02

    Isospin dependent molecular dynamics model has been used successfully for studying isospin effects of heavy ion collisions at intermediate energies. However, there are problems with this model for studying nuclear fusion at low energies near Coulomb barrier, such as unphysical nucleon emissions in the process of projectile and target approaching, lack of shell effect, etc. We improve the isospin dependent molecular dynamics model from various aspects for studying the dynamical process for synthesis of superheavy nuclei at low energies. The shell correction energy of the system is calculated by using deformed two-center shell model. The surface energy of the system is improved by introducing a switch function that combines the surface energies of projectile and target with the one of the compound nucleus. For reaction systems induced by of 16O and 40,48Ca at low energies near Coulomb barrier, it is found that the calculated fusion cross sections show a strong enhancement for the neutron-rich combinations, which can regenerate the experimental data quantitatively. For heavy systems such as 48Ca+208Pb and 48Ca+238U, preliminary calculations show that the experimental capture cross sections can be reproduced quantitively. This model could pave a way for realistic predication of cross sections for synthesis of superheavy nuclei for different projectile-target systems at low energies near Coulomb barrier in future experiments.

  18. Laser beam modeling in optical storage systems

    NASA Technical Reports Server (NTRS)

    Treptau, J. P.; Milster, T. D.; Flagello, D. G.

    1991-01-01

    A computer model has been developed that simulates light propagating through an optical data storage system. A model of a laser beam that originates at a laser diode, propagates through an optical system, interacts with a optical disk, reflects back from the optical disk into the system, and propagates to data and servo detectors is discussed.

  19. Nano Goes to School: A Teaching Model of the Atomic Force Microscope

    ERIC Educational Resources Information Center

    Planinsic, Gorazd; Kovac, Janez

    2008-01-01

    The paper describes a teaching model of the atomic force microscope (AFM), which proved to be successful in the role of an introduction to nanoscience in high school. The model can demonstrate the two modes of operation of the AFM (contact mode and oscillating mode) as well as some basic principles that limit the resolution of the method. It can…

  20. Construction of a microscopic agent-based model for firms' dynamics

    NASA Astrophysics Data System (ADS)

    Iyetomi, Hiroshi; Aoyama, Hideaki; Fujiwara, Yoshi; Ikeda, Yuichi; Kaizoji, Taisei; Soma, Wataru

    2005-07-01

    A workable microscopic model for firms' dynamics has been constructed. The model consists of firm agents and a bank agent dynamics of which are described by balance sheets. The size distribution of firms and the temporal evolution of the bank show critical dependence on whether or not firms use perfect information on their financial conditions to draw up next production plans.

  1. A microscopic model of current-induced switching of magnetization.

    PubMed

    Sandschneider, N; Nolting, W

    2010-01-20

    The behaviour of the magnetization in a ferromagnetic metal/nonmagnetic insulator/ferromagnetic metal/paramagnetic metal tunnel junction is studied, using the nonequilibrium Keldysh formalism. The two ferromagnets are described using the single-band Hubbard model. The left one is treated in the mean field approximation and the right ferromagnet within a (nonequilibrium) spectral density approach which takes interactions beyond the mean field into account. When a voltage is applied to the junction we observe a change of the relative orientation of the two magnetizations, which can be switched from parallel to antiparallel alignment and vice versa. This switching appears in a self-consistent way, so there is no need to use half-classical methods like the Landau-Lifshitz-Gilbert equation one. The dependence of the critical voltage at which the magnetization changes its sign on the model parameters can be studied in a systematic way. PMID:21386267

  2. Mutational robustness emerges in a microscopic model of protein evolution

    NASA Astrophysics Data System (ADS)

    Zeldovich, Konstantin; Shakhnovich, Eugene

    2009-03-01

    The ability to absorb mutations while retaining structure and function, or mutational robustness, is a remarkable property of natural proteins. We use a computational model of organismic evolution [Zeldovich et al, PLOS Comp Biol 3(7):e139 (2007)], which explicitly couples protein physics and population dynamics, to study mutational robustness of evolved model proteins. We compare evolved sequences with the ones designed to fold into the same native structures and having the same thermodynamic stability, and find that evolved sequences are more robust against point mutations, being less likely to be destabilized, and more likely to increase stability upon a point mutation. These results point to sequence evolution as an important method of protein engineering if mutational robustness of the artificially developed proteins is desired. On the biological side, mutational robustness of proteins appears to be a natural consequence of the divergence-mutation- selection evolutionary process.

  3. From microscopic taxation and redistribution models to macroscopic income distributions

    NASA Astrophysics Data System (ADS)

    Bertotti, Maria Letizia; Modanese, Giovanni

    2011-10-01

    We present here a general framework, expressed by a system of nonlinear differential equations, suitable for the modeling of taxation and redistribution in a closed society. This framework allows one to describe the evolution of income distribution over the population and to explain the emergence of collective features based on knowledge of the individual interactions. By making different choices of the framework parameters, we construct different models, whose long-time behavior is then investigated. Asymptotic stationary distributions are found, which enjoy similar properties as those observed in empirical distributions. In particular, they exhibit power law tails of Pareto type and their Lorenz curves and Gini indices are consistent with some real world ones.

  4. An effective model for microscopic intrinsic localized modes.

    SciTech Connect

    Kalosakas, G.; Bishop, A. R.

    2001-01-01

    We present a system of coupled degrees of freedom that can effectively describe the localization of intra-molecular excitations in the charge transfer solid PtCl. These excitations correspond to the Raman active motion of chlorines (symmetric Pt - Cl stretching). By fitting two parameters of the model we obtain an accurate description of the strong red-shifts that appear in the overtone Raman spectra of the isotopically pure material. The resulting intrinsic localized modes extend on length scales of the order of nanometers. With the same set of parameters the model can reproduce the specific structure of the Raman spectra of naturally abundant PtCl, which contains a random distribution of chloride isotopes.

  5. Shape coexistence in the microscopically guided interacting boson model

    NASA Astrophysics Data System (ADS)

    Nomura, K.; Otsuka, T.; Van Isacker, P.

    2016-02-01

    Shape coexistence has been a subject of great interest in nuclear physics for many decades. In the context of the nuclear shell model, intruder excitations may give rise to remarkably low-lying excited {0}+ states associated with different intrinsic shapes. In heavy open-shell nuclei, the dimension of the shell-model configuration space that includes such intruder excitations becomes exceedingly large, thus requiring a drastic truncation scheme. Such a framework has been provided by the interacting boson model (IBM). In this article we address the phenomenon of shape coexistence and its relevant spectroscopy from the point of view of the IBM. A special focus is placed on the method developed recently which makes use of the link between the IBM and the self-consistent mean-field approach based on the nuclear energy density functional. The method is extended to deal with various intruder configurations associated with different equilibrium shapes. We assess the predictive power of the method and suggest possible improvements and extensions, by considering illustrative examples in the neutron-deficient Pb region, where shape coexistence has been experimentally studied.

  6. Three-dimensional force microscope: A nanometric optical tracking and magnetic manipulation system for the biomedical sciences

    NASA Astrophysics Data System (ADS)

    Fisher, J. K.; Cummings, J. R.; Desai, K. V.; Vicci, L.; Wilde, B.; Keller, K.; Weigle, C.; Bishop, G.; Taylor, R. M.; Davis, C. W.; Boucher, R. C.; O'Brien, E. Timothy; Superfine, R.

    2005-05-01

    We report here the development of a three-dimensional (3D) magnetic force microscope for applying forces to and measuring responses of biological systems and materials. This instrument combines a conventional optical microscope with a free-floating or specifically bound magnetic bead used as a mechanical probe. Forces can be applied by the bead to microscopic structures of interest (specimens), while the reaction displacement of the bead is measured. This enables 3D mechanical manipulations and measurements to be performed on specimens in fluids. Force is generated by the magnetically permeable bead in reaction to fields produced by external electromagnets. The displacement is measured by interferometry using forward light scattered by the bead from a focused laser beam. The far-field interference pattern is imaged on a quadrant photodetector from which the 3D displacement can be computed over a limited range about the focal point. The bead and specimen are mounted on a 3D translation stage and feedback techniques are used to keep the bead within this limited range. We demonstrate the system with application to beads attached to cilia in human lung cell cultures.

  7. Signal of microstrip scanning near-field optical microscope in far- and near-field zones.

    PubMed

    Morozov, Yevhenii M; Lapchuk, Anatoliy S

    2016-05-01

    An analytical model of interference between an electromagnetic field of fundamental quasi-TM(EH)00-mode and an electromagnetic field of background radiation at the apex of a near-field probe based on an optical plasmon microstrip line (microstrip probe) has been proposed. The condition of the occurrence of electromagnetic energy reverse flux at the apex of the microstrip probe was obtained. It has been shown that the nature of the interference depends on the length of the probe. Numerical simulation of the sample scanning process was conducted in illumination-reflection and illumination-collection modes. Results of numerical simulation have shown that interference affects the scanning signal in both modes. However, in illumination-collection mode (pure near-field mode), the signal shape and its polarity are practically insensible to probe length change; only signal amplitude (contrast) is slightly changed. However, changing the probe length strongly affects the signal amplitude and shape in the illumination-reflection mode (the signal formed in the far-field zone). Thus, we can conclude that even small background radiation can significantly influence the signal in the far-field zone and has practically no influence on a pure near-field signal. PMID:27140358

  8. An extended differentiated optical services model for WDM optical networks

    NASA Astrophysics Data System (ADS)

    Ouyang, Yong; Zeng, Qingji; Wei, Wei

    2004-04-01

    The need to provide QoS-guaranteed services in the WDM optical networks is becoming increasingly important because of a variety of candidate client networks (e.g., IP, ATM, SONET/SDH) and the requirement for QoS-delivery within the transport layers. This article addresses the QoS problem and presents a framework of QoS provisioning in the WDM optical network. We first characterize the QoS problem in the WDM optical network by comparing with that in the traditional networks. Then we propose a QoS service model in the optical domain called extended differentiated optical services (E-DoS) model based on a set of optical parameters that captures the quality, the reliability and the priority of an optical connection. Each component of the E-DoS model has been analyzed in detail in this article.

  9. Microscopic Shell Model Calculations for the Fluorine Isotopes

    NASA Astrophysics Data System (ADS)

    Barrett, Bruce R.; Dikmen, Erdal; Maris, Pieter; Vary, James P.; Shirokov, Andrey M.

    2015-10-01

    Using a formalism based on the No Core Shell Model (NCSM), we have determined miscroscopically the core and single-particle energies and the effective two-body interactions that are the input to standard shell model (SSM) calculations. The basic idea is to perform a succession of a Okubo-Lee-Suzuki (OLS) transformation, a NCSM calculation, and a second OLS transformation to a further reduced space, such as the sd-shell, which allows the separation of the many-body matrix elements into an ``inert'' core part plus a few valence-nucleons calculation. In the present investigation we use this technique to calculate the properties of the nuclides in the Fluorine isotopic chain, using the JISP16 nucleon-nucleon interaction. The obtained SSM input, along with the results of the SSM calculations for the Fluorine isotopes, will be presented. This work supported in part by TUBITAK-BIDEB, the US DOE, the US NSF, NERSC, and the Russian Ministry of Education and Science.

  10. Microscopic study and modeling of thermodiffusion in binary associating mixtures.

    PubMed

    Eslamian, Morteza; Saghir, M Ziad

    2009-12-01

    Thermodiffusion in associating mixtures is a complex phenomenon, owing to the strong dependence of the molecular structure of such mixtures on concentration. In this paper, we attempt to elucidate this phenomenon and propose a qualitative mechanism for the separation of species in binary associating mixtures. A correlation between the sign change in the thermal diffusion factor and a change in the molecular structure, mixture viscosity, and the excess entropy of mixing in such mixtures is established. To quantify this correlation, we modify our recently developed dynamic model based on the Drickamer nonequilibrium thermodynamic approach [M. Eslamian and M. Z. Saghir, Phys. Rev. E 80, 011201 (2009)] and propose expressions for the estimation of thermal diffusion factor in binary associating mixtures. The prediction power of the proposed expressions, as well as other widely used models, are examined against the experimental data. The proposed theoretical expressions are self-contained and only rely on the viscosity data as input and predict a sign change in the thermal diffusion factor in associating mixtures. PMID:20365155

  11. Nanocluster: photothermal bubble as optical probes for cytometric and microscopic applications

    NASA Astrophysics Data System (ADS)

    Lapotko, Dmitri O.; Lukianova-Hleb, Ekaterina Y.; Hafner, Jason H.

    2007-06-01

    The ability to detect optical signals form a cellular target depends upon the amount of optical energy that can be generated by this target as the signal. Given that the sensitivity of optical detectors has some finite limit, further increase of the sensitivity of optical diagnostic methods requires increasing the energy of target-generated signal. Usually this energy is converted by the cellular target upon its optical excitation and is limited by many factors such as: cell and target damage thresholds, efficiency of excitation energy conversion, size of the target etc. All these put principal limitation on sensing small targets (like molecules) in living cells with any optical method because the energy that can be safely converted by the target into a signal is limited. To overcome this limitation and to improve the sensitivity of optical microscopy of living cells (and cytometry in general) we propose the concept of intracellular amplification of the optical signal. This concept includes two major steps. First, primary (pump) optical radiation interacts with the target (a probe molecule) to generate a transient target. Second, the transient target is sensed with additional optical radiation that does not interact strongly with primary target or the cell, and, hence, may have high enough energy to increase the signal from transient target even above the energy of pump radiation, which is limited by cell and target damage thresholds. We propose to use optical scattering from clusters of gold nanoparticles (the target) that are selectively formed in specific cells through antibody-receptor interaction and through endocytosis. To amplify this optical signal we propose to generate photothermal bubbles (the transient target) around those clusters. In experiments with water suspensions and with individual tumor K562 cells we have achieved optical signal amplification in individual cells (relatively to the scattering signal from intact cells): with gold nanorod

  12. Phases and phase transitions in the algebraic microscopic shell model

    NASA Astrophysics Data System (ADS)

    Georgieva, A. I.; Drumev, K. P.

    2016-01-01

    We explore the dynamical symmetries of the shell model number conserving algebra, which define three types of pairing and quadrupole phases, with the aim to obtain the prevailing phase or phase transition for the real nuclear systems in a single shell. This is achieved by establishing a correspondence between each of the pairing bases with the Elliott's SU(3) basis that describes collective rotation of nuclear systems. This allows for a complete classification of the basis states of different number of particles in all the limiting cases. The probability distribution of the SU(3) basis states within theirs corresponding pairing states is also obtained. The relative strengths of dynamically symmetric quadrupole-quadrupole interaction in respect to the isoscalar, isovector and total pairing interactions define a control parameter, which estimates the importance of each term of the Hamiltonian in the correct reproduction of the experimental data for the considered nuclei.

  13. Three-dimensional phase-contrast X-ray microtomography with scanning–imaging X-ray microscope optics

    PubMed Central

    Takeuchi, Akihisa; Uesugi, Kentaro; Suzuki, Yoshio

    2013-01-01

    A three-dimensional (3D) X-ray tomographic micro-imaging system has been developed. The optical system is based on a scanning–imaging X-ray microscope (SIXM) optics, which is a hybrid system consisting of a scanning microscope optics with a one-dimensional (1D) focusing (line-focusing) device and an imaging microscope optics with a 1D objective. In the SIXM system, each 1D dataset of a two-dimensional (2D) image is recorded independently. An object is illuminated with a line-focused beam. Positional information of the region illuminated by the line-focused beam is recorded with the 1D imaging microscope optics as line-profile data. By scanning the object with the line focus, 2D image data are obtained. In the same manner as for a scanning microscope optics with a multi-pixel detector, imaging modes such as phase contrast and absorption contrast can be arbitrarily configured after the image data acquisition. By combining a tomographic scan method and the SIXM system, quantitative 3D imaging is performed. Results of a feasibility study of the SIXM for 3D imaging are shown. PMID:23955044

  14. A simple but precise method for quantitative measurement of the quality of the laser focus in a scanning optical microscope

    PubMed Central

    MACRAE, K.; TRAVIS, C.; AMOR, R.; NORRIS, G.; WILSON, S.H.; OPPO, G.‐L.; MCCONNELL, G.

    2015-01-01

    Summary We report a method for characterizing the focussing laser beam exiting the objective in a laser scanning microscope. This method provides the size of the optical focus, the divergence of the beam, the ellipticity and the astigmatism. We use a microscopic‐scale knife edge in the form of a simple transmission electron microscopy grid attached to a glass microscope slide, and a light‐collecting optical fibre and photodiode underneath the specimen. By scanning the laser spot from a reflective to a transmitting part of the grid, a beam profile in the form of an error function can be obtained and by repeating this with the knife edge at different axial positions relative to the beam waist, the divergence and astigmatism of the postobjective laser beam can be obtained. The measured divergence can be used to quantify how much of the full numerical aperture of the lens is used in practice. We present data of the beam radius, beam divergence, ellipticity and astigmatism obtained with low (0.15, 0.7) and high (1.3) numerical aperture lenses and lasers commonly used in confocal and multiphoton laser scanning microscopy. Our knife‐edge method has several advantages over alternative knife‐edge methods used in microscopy including that the knife edge is easy to prepare, that the beam can be characterized also directly under a cover slip, as necessary to reduce spherical aberrations for objectives designed to be used with a cover slip, and it is suitable for use with commercial laser scanning microscopes where access to the laser beam can be limited. PMID:25864964

  15. Understanding of nonlinear optical properties of CS2 from a microscopic viewpoint

    NASA Astrophysics Data System (ADS)

    Li, Weiqi; Tian, Wei Quan; Sun, Xiudong

    2012-08-01

    This study is to improve understanding of nonlinear optics through investigating the microstructures of carbon disulfide (CS2) liquid, an important nonlinear optical material. First principles methods are employed in this work to investigate the structure, vibrational spectra, and the 2nd hyperpolarizabilites of CS2 clusters up to tetramers. Three types of molecular arrangements of clusters with different sizes are identified. The cluster conformations are prone to inter-converting under external disturbance due to the weak interactions among molecules. The correlation between the nonlinear optical properties and the conformation of CS2 clusters are studied in detail in this work.

  16. Understanding of nonlinear optical properties of CS2 from a microscopic viewpoint.

    PubMed

    Li, Weiqi; Tian, Wei Quan; Sun, Xiudong

    2012-08-28

    This study is to improve understanding of nonlinear optics through investigating the microstructures of carbon disulfide (CS(2)) liquid, an important nonlinear optical material. First principles methods are employed in this work to investigate the structure, vibrational spectra, and the 2nd hyperpolarizabilites of CS(2) clusters up to tetramers. Three types of molecular arrangements of clusters with different sizes are identified. The cluster conformations are prone to inter-converting under external disturbance due to the weak interactions among molecules. The correlation between the nonlinear optical properties and the conformation of CS(2) clusters are studied in detail in this work. PMID:22938241

  17. Visualizing microscopic structure of simulated model basalt melt

    NASA Astrophysics Data System (ADS)

    Bohara, Bidur; Karki, Bijaya B.

    2013-08-01

    We perform a detailed visualization-based analysis of atomic-position series data for model basalt melt obtained from first-principles (quantum mechanical) molecular dynamics simulations. To gain insight into the short- and mid-range order of the melt structure, we extract and visualize the details of radial distribution function (RDF) and coordination environment. The first peaks of all partial RDFs lie in the distance range of 1.6-4 Å and the corresponding mean coordination numbers vary from less than 1 to more than 9. The coordination environments involving cations and anions differ substantially from each other, each consisting of a rich set of coordination states. These states vary both spatially and temporally: The per-atom coordination information extracted on the fly is rendered instantaneously as the spheres and polyhedra as well as along the corresponding trajectories using a color-coding scheme. The information is also visualized as clusters formed by atoms that are coordinated at different time intervals during the entire simulation. The Si-O coordination is comprised of almost all tetrahedra (4-fold) whereas the Al-O coordination includes both tetrahedra (4-fold) and pentahedra (5-fold). The animated visualization suggests that the melt structure can be viewed as a dynamic (partial) network of Al/Si-O coordination polyhedra connected via bridging oxygen in an inhomogeneous distribution of mobile magnesium and calcium atoms.

  18. Low noise optical lattices for a Li-6 Fermi gas microscope

    NASA Astrophysics Data System (ADS)

    Mazurenko, Anton; Parsons, Maxwell; Chiu, Christie; Huber, Florian; Blatt, Sebastian; Greiner, Markus

    2015-05-01

    We report on recent progress towards single-site resolved imaging of fermions in an optical lattice. Fermionic 6-Li atoms are trapped in an optical lattice 10 μm below a high-quality reference surface in the image plane of a high resolution (NA 0.85) imaging system. We have created a highly intensity-stable optical lattice whose depth remains adjustable over three orders of magnitude. The high optical resolution enables a band mapping technique that allows detection of less than 1000 atoms in the ground band of the lattice. We use this technique to measure the decay of the radial ground band population and find lifetimes up to 70 seconds, limited by spontaneous scattering of lattice light. ARO DARPA OLE, ARO MURI, NSF, AFOSR MURI, and The Moore Foundation.

  19. Microscopic theory of Brownian motion revisited: The Rayleigh model

    NASA Astrophysics Data System (ADS)

    Kim, Changho; Karniadakis, George Em

    2013-03-01

    We investigate three force autocorrelation functions , , and and the friction coefficient γ for the Rayleigh model (a massive particle in an ideal gas) by analytic methods and molecular-dynamics (MD) simulations. Here, F and F+ are the total force and the Mori fluctuating force, respectively, whereas F0 is the force on the Brownian particle under the frozen dynamics, where the Brownian particle is held fixed and the solvent particles move under the external potential due to the presence of the Brownian particle. By using ensemble averaging and the ray representation approach, we obtain two expressions for in terms of the one-particle trajectory and corresponding expressions for γ by the time integration of these expressions. Performing MD simulations of the near-Brownian-limit (NBL) regime, we investigate the convergence of and and compare them with . We show that for a purely repulsive potential between the Brownian particle and a solvent particle, both expressions for produce in the NBL regime. On the other hand, for a potential containing an attractive component, the ray representation expression produces only the contribution of the nontrapped solvent particles. However, we show that the net contribution of the trapped particles to γ disappears, and hence we confirm that both the ensemble-averaged expression and the ray representation expression for γ are valid even if the potential contains an attractive component. We also obtain a closed-form expression of γ for the square-well potential. Finally, we discuss theoretical and practical aspects for the evaluation of and γ.

  20. An optical super-microscope for far-field, real-time imaging beyond the diffraction limit.

    PubMed

    Wong, Alex M H; Eleftheriades, George V

    2013-01-01

    Optical microscopy suffers from a fundamental resolution limitation arising from the diffractive nature of light. While current solutions to sub-diffraction optical microscopy involve combinations of near-field, non-linear and fine scanning operations, we hereby propose and demonstrate the optical super-microscope (OSM) - a superoscillation-based linear imaging system with far-field working and observation distances - which can image an object in real-time and with sub-diffraction resolution. With our proof-of-principle prototype we report a point spread function with a spot size clearly reduced from the diffraction limit, and demonstrate corresponding improvements in two-point resolution experiments. Harnessing a new understanding of superoscillations, based on antenna array theory, our OSM achieves far-field, sub-diffraction optical imaging of an object without the need for fine scanning, data post-processing or object pre-treatment. Hence the OSM can be used in a wide variety of imaging applications beyond the diffraction limit, including real-time imaging of moving objects. PMID:23612684

  1. An Optical Super-Microscope for Far-field, Real-time Imaging Beyond the Diffraction Limit

    PubMed Central

    Wong, Alex M. H.; Eleftheriades, George V.

    2013-01-01

    Optical microscopy suffers from a fundamental resolution limitation arising from the diffractive nature of light. While current solutions to sub-diffraction optical microscopy involve combinations of near-field, non-linear and fine scanning operations, we hereby propose and demonstrate the optical super-microscope (OSM) – a superoscillation-based linear imaging system with far-field working and observation distances – which can image an object in real-time and with sub-diffraction resolution. With our proof-of-principle prototype we report a point spread function with a spot size clearly reduced from the diffraction limit, and demonstrate corresponding improvements in two-point resolution experiments. Harnessing a new understanding of superoscillations, based on antenna array theory, our OSM achieves far-field, sub-diffraction optical imaging of an object without the need for fine scanning, data post-processing or object pre-treatment. Hence the OSM can be used in a wide variety of imaging applications beyond the diffraction limit, including real-time imaging of moving objects. PMID:23612684

  2. Design and calibration of a digital Fourier holographic microscope for particle sizing via goniometry and optical scatter imaging in transmission.

    PubMed

    Rossi, Vincent M; Jacques, Steven L

    2016-06-13

    Goniometry and optical scatter imaging have been used for optical determination of particle size based upon optical scattering. Polystyrene microspheres in suspension serve as a standard for system validation purposes. The design and calibration of a digital Fourier holographic microscope (DFHM) are reported. Of crucial importance is the appropriate scaling of scattering angle space in the conjugate Fourier plane. A detailed description of this calibration process is described. Spatial filtering of the acquired digital hologram to use photons scattered within a restricted angular range produces an image. A pair of images, one using photons narrowly scattered within 8 - 15° (LNA), and one using photons broadly scattered within 8 - 39° (HNA), are produced. An image based on the ratio of these two images, OSIR = HNA/LNA, following Boustany et al. (2002), yields a 2D Optical Scatter Image (OSI) whose contrast is based on the angular dependence of photon scattering and is sensitive to the microsphere size, especially in the 0.5-1.0µm range. Goniometric results are also given for polystyrene microspheres in suspension as additional proof of principle for particle sizing via the DFHM. PMID:27410298

  3. A low temperature ultrahigh vacuum scanning tunneling microscope with high-NA optics to probe optical interactions at the atomic scale

    NASA Astrophysics Data System (ADS)

    Zhang, Haigang; Smerdon, Joseph; Suzer, Ozgun; Kersell, Heath; Guest, Jeffrey

    2015-03-01

    The optical and photophysical properties of single molecules/atoms, defects, and nanoscale structures at surfaces hinge on structure at the atomic scale. In order to characterize and control this structure and unravel these correlations, we are developing a low temperature (LT) laser-coupled ultrahigh vacuum (UHV) scanning tunneling microscope (LT Laser UHV STM) based on the Pan-style STM scanner with integrated high-numerical-aperture (NA) optics for single particle spectroscopy measurements under the STM tip. Using slip-stick inertial piezo steppers, the sample stage can be coarsely translated in X and Y directions. For optical measurements, high-NA optics behind and above the sample focus laser excitation on and collect photons emitted from the tip-sample junction. The STM is cooled by a liquid helium bath surrounded by a liquid nitrogen jacket for operation near 5 K; two separate ultrahigh vacuum chambers are used for sample preparation and STM measurements, respectively. We will describe our progress in demonstrating this instrument and plans for experiments studying the correlation between structure and optical function in nanoscale systems. U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences.

  4. Single-spin microscope with sub-nanoscale resolution based on optically detected magnetic resonance

    SciTech Connect

    Berman, Gennady P; Chernobrod, Boris

    2009-01-01

    Invention of scanning tunneling microscope (STM) and atomic force microscope (AFM) initiated a new era of material science and technology characterized by 2-D imaging with atomic resolution and manipulation of individual atoms. However, for further progress in material science, and in particular in structural biology, 3-D imaging with sub-nanometer resolution is very desirable. Currently the most promising technique for 3-D imaging is magnetic resonance force microscopy (MRFM), which senses individual electron spins [1,2] with nanoscale resolution and can detect collective magnetization of about 100 nuclear spins [3]. The highest sensitivity demonstrated by MRFM is based on a time modulation technique called the oscillating cantilever-driven adiabatic reversals (OSCAAR) which requires a long phase relaxation time T 2 of measured spins, which usually corresponds to rather low temperature. For example, a temperature of 300 mK was used in the case of 3D imaging of the tobacco mosaic virus [3]. This limitation is incompatible with the room-temperature operation needed for the study of biological systems under physiological conditions.

  5. Spatially resolved quantum nano-optics of single photons using an electron microscope.

    PubMed

    Tizei, L H G; Kociak, M

    2013-04-12

    We report on the experimental demonstration of single-photon state generation and characterization in an electron microscope. In this aim we have used low intensity relativistic (energy between 60 and 100 keV) electrons beams focused in a ca. 1 nm probe to excite diamond nanoparticles. This triggered individual neutral nitrogen-vacancy centers to emit photons which could be gathered and sent to a Hanbury Brown-Twiss intensity interferometer. The detection of a dip in the correlation function at small time delays clearly demonstrates antibunching and thus the creation of nonclassical light states. Specifically, we have also demonstrated single-photon states detection. We unveil the mechanism behind quantum states generation in an electron microscope, and show that it clearly makes cathodoluminescence the nanometer scale analog of photoluminescence. By using an extremely small electron probe size and the ability to monitor its position with subnanometer resolution, we also show the possibility of measuring the quantum character of the emitted beam with deep subwavelength resolution. PMID:25167267

  6. Microscopic thin film optical anisotropy imaging at the solid-liquid interface

    NASA Astrophysics Data System (ADS)

    Miranda, Adelaide; De Beule, Pieter A. A.

    2016-04-01

    Optical anisotropy of thin films has been widely investigated through ellipsometry, whereby typically an optical signal is averaged over a ˜1 cm2 elliptical area that extends with increasing angle-of-incidence (AOI). Here, we report on spectroscopic imaging ellipsometry at the solid-liquid interface applied to a supported lipid bilayer (SLB). We detail how a differential spectrally resolved ellipsometry measurement, between samples with and without optically anisotropic thin film on an absorbing substrate, can be applied to recover in and out of plane refractive indices of the thin film with known film thickness, hence determining the thin film optical anisotropy. We also present how optimal wavelength and AOI settings can be determined ensuring low parameter cross correlation between the refractive indices to be determined from a differential measurement in Δ ellipsometry angle. Furthermore, we detail a Monte Carlo type analysis that allows one to determine the minimal required optical ellipsometry resolution to recover a given thin film anisotropy. We conclude by presenting a new setup for a spectroscopic imaging ellipsometry based on fiber supercontinuum laser technology, multi-wavelength diode system, and an improved liquid cell design, delivering a 5 ×-10 × ellipsometric noise reduction over state-of-the-art. We attribute this improvement to increased ellipsometer illumination power and a reduced light path in liquid through the use of a water dipping objective.

  7. Microscopic thin film optical anisotropy imaging at the solid-liquid interface.

    PubMed

    Miranda, Adelaide; De Beule, Pieter A A

    2016-04-01

    Optical anisotropy of thin films has been widely investigated through ellipsometry, whereby typically an optical signal is averaged over a ∼1 cm(2) elliptical area that extends with increasing angle-of-incidence (AOI). Here, we report on spectroscopic imaging ellipsometry at the solid-liquid interface applied to a supported lipid bilayer (SLB). We detail how a differential spectrally resolved ellipsometry measurement, between samples with and without optically anisotropic thin film on an absorbing substrate, can be applied to recover in and out of plane refractive indices of the thin film with known film thickness, hence determining the thin film optical anisotropy. We also present how optimal wavelength and AOI settings can be determined ensuring low parameter cross correlation between the refractive indices to be determined from a differential measurement in Δ ellipsometry angle. Furthermore, we detail a Monte Carlo type analysis that allows one to determine the minimal required optical ellipsometry resolution to recover a given thin film anisotropy. We conclude by presenting a new setup for a spectroscopic imaging ellipsometry based on fiber supercontinuum laser technology, multi-wavelength diode system, and an improved liquid cell design, delivering a 5 ×-10 × ellipsometric noise reduction over state-of-the-art. We attribute this improvement to increased ellipsometer illumination power and a reduced light path in liquid through the use of a water dipping objective. PMID:27131681

  8. The Scanning Theremin Microscope: A Model Scanning Probe Instrument for Hands-On Activities

    ERIC Educational Resources Information Center

    Quardokus, Rebecca C.; Wasio, Natalie A.; Kandel, S. Alex

    2014-01-01

    A model scanning probe microscope, designed using similar principles of operation to research instruments, is described. Proximity sensing is done using a capacitance probe, and a mechanical linkage is used to scan this probe across surfaces. The signal is transduced as an audio tone using a heterodyne detection circuit analogous to that used in…

  9. Extended optical model for fission

    DOE PAGESBeta

    Sin, M.; Capote, R.; Herman, M. W.; Trkov, A.

    2016-03-07

    A comprehensive formalism to calculate fission cross sections based on the extension of the optical model for fission is presented. It can be used for description of nuclear reactions on actinides featuring multi-humped fission barriers with partial absorption in the wells and direct transmission through discrete and continuum fission channels. The formalism describes the gross fluctuations observed in the fission probability due to vibrational resonances, and can be easily implemented in existing statistical reaction model codes. The extended optical model for fission is applied for neutron induced fission cross-section calculations on 234,235,238U and 239Pu targets. A triple-humped fission barrier ismore » used for 234,235U(n,f), while a double-humped fission barrier is used for 238U(n,f) and 239Pu(n,f) reactions as predicted by theoretical barrier calculations. The impact of partial damping of class-II/III states, and of direct transmission through discrete and continuum fission channels, is shown to be critical for a proper description of the measured fission cross sections for 234,235,238U(n,f) reactions. The 239Pu(n,f) reaction can be calculated in the complete damping approximation. Calculated cross sections for 235,238U(n,f) and 239Pu(n,f) reactions agree within 3% with the corresponding cross sections derived within the Neutron Standards least-squares fit of available experimental data. Lastly, the extended optical model for fission can be used for both theoretical fission studies and nuclear data evaluation.« less

  10. Extended optical model for fission

    NASA Astrophysics Data System (ADS)

    Sin, M.; Capote, R.; Herman, M. W.; Trkov, A.

    2016-03-01

    A comprehensive formalism to calculate fission cross sections based on the extension of the optical model for fission is presented. It can be used for description of nuclear reactions on actinides featuring multi-humped fission barriers with partial absorption in the wells and direct transmission through discrete and continuum fission channels. The formalism describes the gross fluctuations observed in the fission probability due to vibrational resonances, and can be easily implemented in existing statistical reaction model codes. The extended optical model for fission is applied for neutron induced fission cross-section calculations on 234,235,238U and 239Pu targets. A triple-humped fission barrier is used for U,235234(n ,f ) , while a double-humped fission barrier is used for 238U(n ,f ) and 239Pu(n ,f ) reactions as predicted by theoretical barrier calculations. The impact of partial damping of class-II/III states, and of direct transmission through discrete and continuum fission channels, is shown to be critical for a proper description of the measured fission cross sections for 234,235,238U(n ,f ) reactions. The 239Pu(n ,f ) reaction can be calculated in the complete damping approximation. Calculated cross sections for U,238235(n ,f ) and 239Pu(n ,f ) reactions agree within 3% with the corresponding cross sections derived within the Neutron Standards least-squares fit of available experimental data. The extended optical model for fission can be used for both theoretical fission studies and nuclear data evaluation.

  11. Multiple-order imaging for optical critical dimension metrology using microscope characterization

    NASA Astrophysics Data System (ADS)

    Qin, Jing; Zhou, Hui; Barnes, Bryan M.; Goasmat, Francois; Dixson, Ronald; Silver, Richard M.

    2012-10-01

    There has been much recent work in developing advanced optical metrology applications that use imaging optics for optical critical dimension (OCD) measurements, defect detection, and for potential use with in-die metrology applications. We have previously reported quantitative measurements for sub-50 nm CD dense arrays which scatter only the 0th-order specular diffraction component using angle-resolved scatterfield microscopy. Through angle-resolved and focus-resolved imaging, we now measure OCD targets with three-dimensional scattered fields that contain multiple Fourier frequencies. Experimental sensitivity to nanometer scale linewidth changes is presented, supported by simulation studies. A new, more advanced approach to tool normalization is coupled with rigorous electromagnetic simulations and library based regression fitting that potentially enables OCD measurements with sub-nanometer uncertainties for targets that scatter multiple Fourier frequencies.

  12. Microscopic [ital T]-Violating Optical Potential: Implications for Neutron-Transmission Experiments

    SciTech Connect

    Engel, J.; Gould, C.R.; Hnizdo, V. Department of Physics, North Carolina State University, Raleigh, North Carolina 27695 Triangle Universities Nuclear Laboratory, Durham, North Carolina 27708 Department of Physics and Schonland Research Centre for Nuclear Sciences, University of the Witwatersrand, Johannesburg, 2050 )

    1994-12-26

    We derive a [ital T]-violating [ital P]-conserving optical potential for neutron-nucleus scattering, starting from a uniquely determined two-body [rho]-exchange interaction with the same symmetry. We then obtain limits on the [ital T]-violating [rho]-nucleon coupling [ital [bar g

  13. Development of the water window imaging X-ray microscope utilizing normal-incidence multilayer optics

    NASA Technical Reports Server (NTRS)

    Hoover, Richard B.; Shealy, David L.; Brinkley, B. R.; Baker, Phillip C.; Barbee, Troy W., Jr.; Walker, Arthur B. C., Jr.

    1991-01-01

    A water-window imaging X-ray telescope configured with normal-incidence multilayer X-ray mirrors has been developed to obtain images with unprecedented spatial resolution and contrast of carbon-based microstructures within living cells. The narrow bandpass response inherent in multilayer X-ray optics is accurately tuned to wavelengths within the water window.

  14. Effect of cantilever geometry on the optical lever sensitivities and thermal noise method of the atomic force microscope

    SciTech Connect

    Sader, John E.; Lu, Jianing; Mulvaney, Paul

    2014-11-15

    Calibration of the optical lever sensitivities of atomic force microscope (AFM) cantilevers is especially important for determining the force in AFM measurements. These sensitivities depend critically on the cantilever mode used and are known to differ for static and dynamic measurements. Here, we calculate the ratio of the dynamic and static sensitivities for several common AFM cantilevers, whose shapes vary considerably, and experimentally verify these results. The dynamic-to-static optical lever sensitivity ratio is found to range from 1.09 to 1.41 for the cantilevers studied – in stark contrast to the constant value of 1.09 used widely in current calibration studies. This analysis shows that accuracy of the thermal noise method for the static spring constant is strongly dependent on cantilever geometry – neglect of these dynamic-to-static factors can induce errors exceeding 100%. We also discuss a simple experimental approach to non-invasively and simultaneously determine the dynamic and static spring constants and optical lever sensitivities of cantilevers of arbitrary shape, which is applicable to all AFM platforms that have the thermal noise method for spring constant calibration.

  15. Note: A stand on the basis of atomic force microscope to study substrates for imaging optics

    SciTech Connect

    Chkhalo, N. I.; Salashchenko, N. N.; Zorina, M. V.

    2015-01-15

    A description of a stand based on atomic force microscopy (AFM) for roughness measurements of large optical components with arbitrary surfaces is given. The sample under study is mounted on a uniaxial goniometer which allows the sample to be tilted in the range of ±30°. The inclination enables the local normal along the axis of the probe to be established at any point of the surface under study. A comparison of the results of the measurement of noise and roughness of a flat quartz sample, in the range of spatial frequencies 0.025–70 μm{sup −1}, obtained from “standard” AFM and developed versions is given. Within the experimental error, the measurement results were equivalent. Examples of applications of the stand for the study of substrates for X-ray optics are presented.

  16. Fast ground state manipulation of neutral atoms in microscopic optical traps.

    PubMed

    Yavuz, D D; Kulatunga, P B; Urban, E; Johnson, T A; Proite, N; Henage, T; Walker, T G; Saffman, M

    2006-02-17

    We demonstrate Rabi flopping at MHz rates between ground hyperfine states of neutral 87Rb atoms that are trapped in two micron sized optical traps. Using tightly focused laser beams we demonstrate high fidelity, site specific Rabi rotations with cross talk on neighboring sites separated by 8 microm at the level of 10(-3). Ramsey spectroscopy is used to measure a dephasing time of 870 micros, which is approximately 5000 longer than the time for a pi/2 pulse. PMID:16605988

  17. Deterministic and Stochastic Study for a Microscopic Angiogenesis Model: Applications to the Lewis Lung Carcinoma

    PubMed Central

    Bodnar, Marek; Piotrowska, Monika J.

    2016-01-01

    Angiogenesis modelling is an important tool to understand the underlying mechanisms yielding tumour growth. Nevertheless, there is usually a gap between models and experimental data. We propose a model based on the intrinsic microscopic reactions defining the angiogenesis process to link experimental data with previous macroscopic models. The microscopic characterisation can describe the macroscopic behaviour of the tumour, which stability analysis reveals a set of predicted tumour states involving different morphologies. Additionally, the microscopic description also gives a framework to study the intrinsic stochasticity of the reactive system through the resulting Langevin equation. To follow the goal of the paper, we use available experimental information on the Lewis lung carcinoma to infer meaningful parameters for the model that are able to describe the different stages of the tumour growth. Finally we explore the predictive capabilities of the fitted model by showing that fluctuations are determinant for the survival of the tumour during the first week and that available treatments can give raise to new stable tumour dormant states with a reduced vascular network. PMID:27182891

  18. Optical design and performance of the IR microscope beamline at SUPERACO-France

    NASA Astrophysics Data System (ADS)

    Polack, Francois A.; Mercier, Raymond; Nahon, Laurent; Armellin, Catherine; Marx, Jean Pierre; Tanguy, Michel; Couprie, Marie-Emmanuelle; Dumas, Paul

    1999-10-01

    Infrared microspectrometry, using a synchrotron radiation source, has been developed at Super-ACO (LURE-France). In order to accommodate for constrained horizontal (45 mrad) and vertical (18 mrad) collection angles, a particular care has been devoted to the design and making of the extraction optics, in order to achieve the highest brightness as possible, for small area illumination. Experimentally, a net gain of one hundred in Signal to Noise Ratio has been measured for an upper aperture of 3 X 3 micrometers 2. Several applications are currently underway, and some of them, related to Biomedical Science are reported in this paper.

  19. Filtering for unwrapping noisy Doppler optical coherence tomography images for extended microscopic fluid velocity measurement range.

    PubMed

    Xu, Yang; Darga, Donald; Smid, Jason; Zysk, Adam M; Teh, Daniel; Boppart, Stephen A; Scott Carney, P

    2016-09-01

    In this Letter, we report the first application of two phase denoising algorithms to Doppler optical coherence tomography (DOCT) velocity maps. When combined with unwrapping algorithms, significantly extended fluid velocity dynamic range is achieved. Instead of the physical upper bound, the fluid velocity dynamic range is now limited by noise level. We show comparisons between physical simulated ideal velocity maps and the experimental results of both algorithms. We demonstrate unwrapped DOCT velocity maps having a peak velocity nearly 10 times the theoretical measurement range. PMID:27607963

  20. Imaging and detection of early stage dental caries with an all-optical photoacoustic microscope

    NASA Astrophysics Data System (ADS)

    Hughes, D. A.; Sampathkumar, A.; Longbottom, C.; Kirk, K. J.

    2015-01-01

    Tooth decay, at its earliest stages, manifests itself as small, white, subsurface lesions in the enamel. Current methods for detection in the dental clinic are visual and tactile investigations, and bite-wing X-ray radiographs. These techniques suffer from poor sensitivity and specificity at the earliest (and reversible) stages of the disease due to the small size (<100μm) of the lesion. A fine-resolution (600 nm) ultra-broadband (200 MHz) all-optical photoacoustic microscopy system was is used to image the early signs of tooth decay. Ex-vivo tooth samples exhibiting white spot lesions were scanned and were found to generate a larger (one order of magnitude) photoacoustic (PA) signal in the lesion regions compared to healthy enamel. The high contrast in the PA images potentially allows lesions to be imaged and measured at a much earlier stage than current clinical techniques allow. PA images were cross referenced with histology photographs to validate our experimental results. Our PA system provides a noncontact method for early detection of white-spot lesions with a high detection bandwidth that offers advantages over previously demonstrated ultrasound methods. The technique provides the sensing depth of an ultrasound system, but with the spatial resolution of an optical system.

  1. Coherent double-color interference microscope for traceable optical surface metrology

    NASA Astrophysics Data System (ADS)

    Malinovski, I.; França, R. S.; Bessa, M. S.; Silva, C. R.; Couceiro, I. B.

    2016-06-01

    Interference microscopy is an important field of dimensional surface metrology because it provides direct traceability of the measurements to the SI base unit definition of the metre. With a typical measurement range from micrometres to nanometres interference microscopy (IM) covers the gap between classic metrology and nanometrology, providing continuous transfer of dimensional metrology into new areas of nanoscience and nanotechnology. Therefore IM is considered to be an indispensable tool for traceable transfer of the metre unit to different instruments. We report here the metrological study of an absolute Linnik interference microscope (IM) based on two frequency stabilized lasers. The design permits the flexible use of both lasers for measurements depending on the demand of the concrete measurement task. By principle of operation IM is combination of imaging and phase-shifting interferometry (PSI). The traceability is provided by the wavelength reference, that is, a He-Ne 633 nm stabilized laser. The second laser source, that is, a Blue-Green 488 nm grating stabilized laser diode, is used for improvements of resolution, and also for resolving integer fringe discontinuities on sharp features of the surface. The IM was optimized for surface height metrology. We have performed the study of the systematic effects of the measurements. This study allowed us to improve the hardware and software of IM and to find corrections for main systematic errors. The IM is purposed for 1D to 3D height metrology and surface topography in an extended range from nanometres to micrometres. The advantages and disadvantages of the design and developed methods are discussed.

  2. Ultrafast chirped optical waveform recorder using referenced heterodyning and a time microscope

    DOEpatents

    Bennett, Corey Vincent

    2011-11-22

    A new technique for capturing both the amplitude and phase of an optical waveform is presented. This technique can capture signals with many THz of bandwidths in a single shot (e.g., temporal resolution of about 44 fs), or be operated repetitively at a high rate. That is, each temporal window (or frame) is captured single shot, in real time, but the process may be run repeatedly or single-shot. This invention expands upon previous work in temporal imaging by adding heterodyning, which can be self-referenced for improved precision and stability, to convert frequency chirp (the second derivative of phase with respect to time) into a time varying intensity modulation. By also including a variety of possible demultiplexing techniques, this process is scalable to recoding continuous signals.

  3. Ultrafast chirped optical waveform recording using referenced heterodyning and a time microscope

    DOEpatents

    Bennett, Corey Vincent

    2010-06-15

    A new technique for capturing both the amplitude and phase of an optical waveform is presented. This technique can capture signals with many THz of bandwidths in a single shot (e.g., temporal resolution of about 44 fs), or be operated repetitively at a high rate. That is, each temporal window (or frame) is captured single shot, in real time, but the process may be run repeatedly or single-shot. This invention expands upon previous work in temporal imaging by adding heterodyning, which can be self-referenced for improved precision and stability, to convert frequency chirp (the second derivative of phase with respect to time) into a time varying intensity modulation. By also including a variety of possible demultiplexing techniques, this process is scalable to recoding continuous signals.

  4. Observation of electrodeposited lithium by optical microscope in room temperature ionic liquid-based electrolyte

    NASA Astrophysics Data System (ADS)

    Sano, H.; Sakaebe, H.; Matsumoto, H.

    Room temperature ionic liquids (RTILs) were applied to a lithium (Li) metal battery system, and the behavior of Li electrodeposition on nickel electrodes in RTILs was investigated using in situ optical microscopy with/without an organic additive, vinylene carbonate (VC), in the RTILs. Two RTILs, PP13[TFSA] (N-methyl- N-propylpiperidinium bis(trifluoromethanesulfonyl)amide) and EMI[FSA] (1-ethyl-3-methylimidazolium bis(fluorosulfonyl)amide), were chosen as the base electrolytes. Dendritic particles were obtained in the case of EMI[FSA] with and without VC, and PP13[TFSA] without VC, while non-dendritic fine particles were obtained in the case of PP13[TFSA] with VC.

  5. Multi-colour microscopic interferometry for optical metrology and imaging applications

    NASA Astrophysics Data System (ADS)

    Upputuri, Paul Kumar; Pramanik, Manojit; Nandigana, Krishna Mohan; Kothiyal, Mahendra Prasad

    2016-09-01

    Interferometry has been widely used for optical metrology and imaging applications because of their precision, reliability, and versatility. Although single-wavelength interferometery can provide high sensitivity and resolution, it has several drawbacks, namely, it fails to quantify large-discontinuities, large-deformations, and shape of unpolished surfaces. Multiple-wavelength techniques have been successfully used to overcome the drawbacks associated with single wavelength analysis. The use of colour CCD camera allows simultaneous acquisition of multiple interferograms. The advances in colour CCD cameras and image processing techniques have made the multi-colour interferometry a faster, simpler, and cost-effective tool for industrial applications. This article reviews the recent advances in multi-colour interferometric techniques and their demanding applications for characterization of micro-systems, non-destructive testing, and bio-imaging applications.

  6. Measurement of the microscopic viscosities of microfluids with a dynamic optical tweezers system

    PubMed Central

    Zhang, Yuquan; Wu, Xiaojing; Wang, Yijia; Zhu, Siwei; Gao, Bruce Z; Yuan, X-C

    2016-01-01

    Viscosity coefficients of microfluids—Newtonian and non-Newtonian—were explored through the rotational motion of a particle trapped by optical tweezers in a microflute. Unlike conventional methods based on viscometers, our microfluidic system employs samples of less than 30 µl to complete a measurement. Viscosity coefficients of ethanol and fetal bovine serum, as typical examples of Newtonian and non-Newtonian fluids, were obtained experimentally, and found to be in excellent agreement with theoretical predictions. Additionally, a practical application to a DNA solution with incremental ethidium bromide content was employed and the results are consistent with clinical data, indicating that our system provides a potentially important complementary tool for use in such biological and medical applications. PMID:27087769

  7. Single-spin microscope with sub-nanoscale resolution based on optically detected magnetic resonance

    NASA Astrophysics Data System (ADS)

    Berman, Gennady P.; Chernobrod, Boris M.

    2010-01-01

    Recently we proposed a new approach which potentially has single spin sensitivity, sub-nanometer spatial resolution, and ability to operate at room temperature (J. Appl. Phys. 97, 014903 (2005); U.S. Patent No. 7,305,869, 2007). In our approach a nanoscale photoluminescent center exhibits optically detected magnetic resonance (ODMR) in the vicinity of magnetic moment in the sample related with unpaired individual electron or nuclear spins, or ensemble of spins. We consider as a sensor material that exhibit ODMR properties nitrogen-vacancy (N-V) centers in diamond. N-V centers in diamond has serious advantage having extraordinary chemical and photostability, very long spin lifetimes, and ability single-spin detection at room temperature. The variety of possible scanning schemes has been considered. The potential application to 3D imaging of biological structure has been analyzed.

  8. Resolving three-dimensional shape of sub-50 nm wide lines with nanometer-scale sensitivity using conventional optical microscopes

    SciTech Connect

    Attota, Ravikiran Dixson, Ronald G.

    2014-07-28

    We experimentally demonstrate that the three-dimensional (3-D) shape variations of nanometer-scale objects can be resolved and measured with sub-nanometer scale sensitivity using conventional optical microscopes by analyzing 4-D optical data using the through-focus scanning optical microscopy (TSOM) method. These initial results show that TSOM-determined cross-sectional (3-D) shape differences of 30 nm–40 nm wide lines agree well with critical-dimension atomic force microscope measurements. The TSOM method showed a linewidth uncertainty of 1.22 nm (k = 2). Complex optical simulations are not needed for analysis using the TSOM method, making the process simple, economical, fast, and ideally suited for high volume nanomanufacturing process monitoring.

  9. Continuum-kinetic-microscopic model of lung clearance due to core-annular fluid entrainment

    NASA Astrophysics Data System (ADS)

    Mitran, Sorin

    2013-07-01

    The human lung is protected against aspirated infectious and toxic agents by a thin liquid layer lining the interior of the airways. This airway surface liquid is a bilayer composed of a viscoelastic mucus layer supported by a fluid film known as the periciliary liquid. The viscoelastic behavior of the mucus layer is principally due to long-chain polymers known as mucins. The airway surface liquid is cleared from the lung by ciliary transport, surface tension gradients, and airflow shear forces. This work presents a multiscale model of the effect of airflow shear forces, as exerted by tidal breathing and cough, upon clearance. The composition of the mucus layer is complex and variable in time. To avoid the restrictions imposed by adopting a viscoelastic flow model of limited validity, a multiscale computational model is introduced in which the continuum-level properties of the airway surface liquid are determined by microscopic simulation of long-chain polymers. A bridge between microscopic and continuum levels is constructed through a kinetic-level probability density function describing polymer chain configurations. The overall multiscale framework is especially suited to biological problems due to the flexibility afforded in specifying microscopic constituents, and examining the effects of various constituents upon overall mucus transport at the continuum scale.

  10. Continuum-kinetic-microscopic model of lung clearance due to core-annular fluid entrainment

    PubMed Central

    Mitran, Sorin

    2013-01-01

    The human lung is protected against aspirated infectious and toxic agents by a thin liquid layer lining the interior of the airways. This airway surface liquid is a bilayer composed of a viscoelastic mucus layer supported by a fluid film known as the periciliary liquid. The viscoelastic behavior of the mucus layer is principally due to long-chain polymers known as mucins. The airway surface liquid is cleared from the lung by ciliary transport, surface tension gradients, and airflow shear forces. This work presents a multiscale model of the effect of airflow shear forces, as exerted by tidal breathing and cough, upon clearance. The composition of the mucus layer is complex and variable in time. To avoid the restrictions imposed by adopting a viscoelastic flow model of limited validity, a multiscale computational model is introduced in which the continuum-level properties of the airway surface liquid are determined by microscopic simulation of long-chain polymers. A bridge between microscopic and continuum levels is constructed through a kinetic-level probability density function describing polymer chain configurations. The overall multiscale framework is especially suited to biological problems due to the flexibility afforded in specifying microscopic constituents, and examining the effects of various constituents upon overall mucus transport at the continuum scale. PMID:23729842

  11. Parametrization of Extended Gaussian Disorder Models from Microscopic Charge Transport Simulations.

    PubMed

    Kordt, Pascal; Stenzel, Ole; Baumeier, Björn; Schmidt, Volker; Andrienko, Denis

    2014-06-10

    Simulations of organic semiconducting devices using drift-diffusion equations are vital for the understanding of their functionality as well as for the optimization of their performance. Input parameters for these equations are usually determined from experiments and do not provide a direct link to the chemical structures and material morphology. Here we demonstrate how such a parametrization can be performed by using atomic-scale (microscopic) simulations. To do this, a stochastic network model, parametrized on atomistic simulations, is used to tabulate charge mobility in a wide density range. After accounting for finite-size effects at small charge densities, the data is fitted to the uncorrelated and correlated extended Gaussian disorder models. Surprisingly, the uncorrelated model reproduces the results of microscopic simulations better than the correlated one, compensating for spatial correlations present in a microscopic system by a large lattice constant. The proposed method retains the link to the material morphology and the underlying chemistry and can be used to formulate structure-property relationships or optimize devices prior to compound synthesis. PMID:26580771

  12. Modeling the Laser Interferometer Space Antenna Optics

    NASA Technical Reports Server (NTRS)

    Waluschka, Eugene; Pedersen, Trace R.; McNamara, Paul

    2005-01-01

    Creating an optical model of the Laser Interferometer Space antenna which can be used to predict optical sensitivities and set tolerances sufficiently well such that picometer level displacements can be reliably seen poses certain challenges. In part, because the distances between key optical elements, the proof masses, are constantly changing, at speeds of meters/second, the separation between them is about 5 million kilometers and a contributing factor to optical jitter is the self-gravity of the spacecraft. A discussion of the current state and future approach(s) to the creation of such an optical model will be presented.

  13. Optical analogs of model atoms in fields

    SciTech Connect

    Milonni, P.W.

    1991-05-02

    The equivalence of the paraxial wave equation to a time-dependent Schroedinger equation is exploited to construct optical analogs of model atoms in monochromatic fields. The approximation of geometrical optics provides the analog of the corresponding classical mechanics. Optical analogs of Rabi oscillations, photoionization, stabilization, and the Kramers-Henneberger transformation are discussed. One possibility for experimental realization of such optical analogs is proposed. These analogs may be useful for studies of quantum chaos'' when the ray trajectories are chaotic. 9 refs.

  14. Storage Ring Optics Measurement, Model, and Correction

    SciTech Connect

    Yan, Yiton T.; /SLAC

    2007-04-04

    To improve the optics of a storage ring, it is very helpful if one has an accurate lattice model. Although the ideal lattice may serve such a purpose to some extent, in most cases, real accelerator optics improvement requires accurate measurement of optics parameters. In this section, we present precision measurements of a complete set of linear orbits from which we can form a linear optics model to match the linear optics of the real machine. We call such a model a virtual machine. We have used a model-independent analysis (MIA) for accurate orbit and phase advance measurement and then used an SVD-enhanced Least Square fitting for building accurate virtual models for PEP-II e+, e- storage rings. The MIA virtual machine matches very well the real-machine linear optics including dispersion. It has successfully improved PEP-II beta beats, linear couplings, half-integer working tunes, and dispersion.

  15. Optical models of the human eye.

    PubMed

    Atchison, David A; Thibos, Larry N

    2016-03-01

    Optical models of the human eye have been used in visual science for purposes such as providing a framework for explaining optical phenomena in vision, for predicting how refraction and aberrations are affected by change in ocular biometry and as computational tools for exploring the limitations imposed on vision by the optical system of the eye. We address the issue of what is understood by optical model eyes, discussing the 'encyclopaedia' and 'toy train' approaches to modelling. An extensive list of purposes of models is provided. We discuss many of the theoretical types of optical models (also schematic eyes) of varying anatomical accuracy, including single, three and four refracting surface variants. We cover the models with lens structure in the form of nested shells and gradient index. Many optical eye models give accurate predictions only for small angles and small fields of view. If aberrations and image quality are important to consider, such 'paraxial' model eyes must be replaced by 'finite model' eyes incorporating features such as aspheric surfaces, tilts and decentrations, wavelength-dependent media and curved retinas. Many optical model eyes are population averages and must become adaptable to account for age, gender, ethnicity, refractive error and accommodation. They can also be customised for the individual when extensive ocular biometry and optical performance data are available. We consider which optical model should be used for a particular purpose, adhering to the principle that the best model is the simplest fit for the task. We provide a glimpse into the future of optical models of the human eye. This review is interwoven with historical developments, highlighting the important people who have contributed so richly to our understanding of visual optics. PMID:26969304

  16. Evaluation of an X-ray-excited optical microscope for chemical imaging of metal and other surfaces.

    PubMed

    Sabbe, Pieter-Jan; Dowsett, Mark; Hand, Matthew; Grayburn, Rosie; Thompson, Paul; Bras, Wim; Adriaens, Annemie

    2014-12-01

    The application of a modular system for the nondestructive chemical imaging of metal and other surfaces is described using heritage metals as an example. The custom-built X-ray-excited optical luminescence (XEOL) microscope, XEOM 1, images the chemical state and short-range atomic order of the top 200 nm of both amorphous and crystalline surfaces. A broad X-ray beam is used to illuminate large areas (up to 4 mm(2)) of the sample, and the resulting XEOL emission is collected simultaneously for each pixel by a charge-coupled device sensor to form an image. The input X-ray energy is incremented across a range typical for the X-ray absorption near-edge structure (XANES) and an image collected for each increment. The use of large-footprint beams combined with parallel detection allows the power density to be kept low and facilitates complete nondestructive XANES mapping on a reasonable time scale. In this study the microscope was evaluated by imaging copper surfaces with well-defined patterns of different corrosion products (cuprite Cu2O and nantokite CuCl). The images obtained show chemical contrast, and filtering the XEOL light allowed different corrosion products to be imaged separately. Absorption spectra extracted from software-selected regions of interest exhibit characteristic XANES fingerprints for the compounds present. Moreover, when the X-ray absorption edge positions were extracted from each spectrum, an oxidation state map of the sample could be compiled. The results show that this method allows one to obtain nondestructive and noninvasive information at the micrometer scale while using full-field imaging. PMID:25375864

  17. Microscopic model versus systematic low-energy effective field theory for a doped quantum ferromagnet

    SciTech Connect

    Gerber, U.; Wiese, U.-J.; Hofmann, C. P.; Kaempfer, F.

    2010-02-01

    We consider a microscopic model for a doped quantum ferromagnet as a test case for the systematic low-energy effective field theory for magnons and holes, which is constructed in complete analogy to the case of quantum antiferromagnets. In contrast to antiferromagnets, for which the effective field theory approach can be tested only numerically, in the ferromagnetic case, both the microscopic and the effective theory can be solved analytically. In this way, the low-energy parameters of the effective theory are determined exactly by matching to the underlying microscopic model. The low-energy behavior at half-filling as well as in the single- and two-hole sectors is described exactly by the systematic low-energy effective field theory. In particular, for weakly bound two-hole states the effective field theory even works beyond perturbation theory. This lends strong support to the quantitative success of the systematic low-energy effective field theory method not only in the ferromagnetic but also in the physically most interesting antiferromagnetic case.

  18. Investigating Students' Mental Models and Knowledge Construction of Microscopic Friction. I. Implications for Curriculum Design and Development

    ERIC Educational Resources Information Center

    Corpuz, Edgar D.; Rebello, N. Sanjay

    2011-01-01

    In this paper, we discuss the first phase of a multiphase study aimed at investigating the dynamics of students' knowledge construction in the context of unfamiliar physical phenomenon--microscopic friction. The first phase of this study involved the investigation of the variations in students' mental models of microscopic friction. Clinical…

  19. Studying PMMA films on silica surfaces with generic microscopic and mesoscale models

    NASA Astrophysics Data System (ADS)

    Zhang, J.; Mukherji, D.; Daoulas, K. Ch.

    2016-07-01

    Polymer films on solid substrates present significant interest for fundamental polymer physics and industrial applications. For their mesoscale study, we develop a hybrid particle-based representation where polymers are modeled as worm-like chains and non-bonded interactions are introduced through a simple density functional. The mesoscale description is parameterized to match a generic microscopic model, which nevertheless can represent real materials. Choosing poly (methyl methacrylate) adsorbed on silica as a case study, the consistency of both models in describing conformational and structural properties in polymer films is investigated. We compare selected quantifiers of chain-shape, the structure of the adsorbed layer, as well as the statistics of loops, tails, and trains. Overall, the models are found to be consistent with each other. Some deviations in conformations and structure of adsorbed layer can be attributed to the simplified description of polymer/surface interactions and local liquid packing in the mesoscale model. These results are encouraging for a future development of pseudo-dynamical schemes, parameterizing the kinetics in the hybrid model via the dynamics of the generic microscopic model.

  20. Optical models of the molecular atmosphere

    NASA Technical Reports Server (NTRS)

    Zuev, V. E.; Makushkin, Y. S.; Mitsel, A. A.; Ponomarev, Y. N.; Rudenko, V. P.; Firsov, K. M.

    1986-01-01

    The use of optical and laser methods for performing atmospheric investigations has stimulated the development of the optical models of the atmosphere. The principles of constructing the optical models of molecular atmosphere for radiation with different spectral composition (wideband, narrowband, and monochromatic) are considered in the case of linear and nonlinear absorptions. The example of the development of a system which provides for the modeling of the processes of optical-wave energy transfer in the atmosphere is presented. Its physical foundations, structure, programming software, and functioning were considered.

  1. Microscope collision protection apparatus

    DOEpatents

    DeNure, Charles R.

    2001-10-23

    A microscope collision protection apparatus for a remote control microscope which protects the optical and associated components from damage in the event of an uncontrolled collision with a specimen, regardless of the specimen size or shape. In a preferred embodiment, the apparatus includes a counterbalanced slide for mounting the microscope's optical components. This slide replaces the rigid mounts on conventional upright microscopes with a precision ball bearing slide. As the specimen contacts an optical component, the contacting force will move the slide and the optical components mounted thereon. This movement will protect the optical and associated components from damage as the movement causes a limit switch to be actuated, thereby stopping all motors responsible for the collision.

  2. Design of high-performance adaptive objective lens with large optical depth scanning range for ultrabroad near infrared microscopic imaging

    PubMed Central

    Lan, Gongpu; Mauger, Thomas F.; Li, Guoqiang

    2015-01-01

    We report on the theory and design of adaptive objective lens for ultra broadband near infrared light imaging with large dynamic optical depth scanning range by using an embedded tunable lens, which can find wide applications in deep tissue biomedical imaging systems, such as confocal microscope, optical coherence tomography (OCT), two-photon microscopy, etc., both in vivo and ex vivo. This design is based on, but not limited to, a home-made prototype of liquid-filled membrane lens with a clear aperture of 8mm and the thickness of 2.55mm ~3.18mm. It is beneficial to have an adaptive objective lens which allows an extended depth scanning range larger than the focal length zoom range, since this will keep the magnification of the whole system, numerical aperture (NA), field of view (FOV), and resolution more consistent. To achieve this goal, a systematic theory is presented, for the first time to our acknowledgment, by inserting the varifocal lens in between a front and a back solid lens group. The designed objective has a compact size (10mm-diameter and 15mm-length), ultrabroad working bandwidth (760nm - 920nm), a large depth scanning range (7.36mm in air) — 1.533 times of focal length zoom range (4.8mm in air), and a FOV around 1mm × 1mm. Diffraction-limited performance can be achieved within this ultrabroad bandwidth through all the scanning depth (the resolution is 2.22 μm - 2.81 μm, calculated at the wavelength of 800nm with the NA of 0.214 - 0.171). The chromatic focal shift value is within the depth of focus (field). The chromatic difference in distortion is nearly zero and the maximum distortion is less than 0.05%. PMID:26417508

  3. Integrating the Advanced Human Eye Model (AHEM) and optical instrument models to model complete visual optical systems inclusive of the typical or atypical eye

    NASA Astrophysics Data System (ADS)

    Donnelly, William J., III

    2012-06-01

    PURPOSE: To present a commercially available optical modeling software tool to assist the development of optical instrumentation and systems that utilize and/or integrate with the human eye. METHODS: A commercially available flexible eye modeling system is presented, the Advanced Human Eye Model (AHEM). AHEM is a module that the engineer can use to perform rapid development and test scenarios on systems that integrate with the eye. Methods include merging modeled systems initially developed outside of AHEM and performing a series of wizard-type operations that relieve the user from requiring an optometric or ophthalmic background to produce a complete eye inclusive system. Scenarios consist of retinal imaging of targets and sources through integrated systems. Uses include, but are not limited to, optimization, telescopes, microscopes, spectacles, contact and intraocular lenses, ocular aberrations, cataract simulation and scattering, and twin eye model (binocular) systems. RESULTS: Metrics, graphical data, and exportable CAD geometry are generated from the various modeling scenarios.

  4. Enhanced defect detection capability using learning system for extreme ultraviolet lithography mask inspection tool with projection electron microscope optics

    NASA Astrophysics Data System (ADS)

    Hirano, Ryoichi; Hatakeyama, Masahiro; Terao, Kenji; Watanabe, Hidehiro

    2016-04-01

    Extreme ultraviolet lithography (EUVL) patterned mask defect detection is a major issue that must be addressed to realize EUVL-based device fabrication. We have designed projection electron microscope (PEM) optics for integration into a mask inspection system, and the resulting PEM system performs well in half-pitch (hp) 16-nm-node EUVL patterned mask inspection applications. A learning system has been used in this PEM patterned mask inspection tool. The PEM identifies defects using the "defectivity" parameter that is derived from the acquired image characteristics. The learning system has been developed to reduce the labor and the costs associated with adjustment of the PEM's detection capabilities to cope with newly defined mask defects. The concepts behind this learning system and the parameter optimization flow are presented here. The learning system for the PEM is based on a library of registered defects. The learning system then optimizes the detection capability by reconciling previously registered defects with newly registered defects. Functional verification of the learning system is also described, and the system's detection capability is demonstrated by applying it to the inspection of hp 11-nm EUV masks. We can thus provide a user-friendly mask inspection system with reduced cost of ownership.

  5. Predicting vehicular emissions in high spatial resolution using pervasively measured transportation data and microscopic emissions model

    NASA Astrophysics Data System (ADS)

    Nyhan, Marguerite; Sobolevsky, Stanislav; Kang, Chaogui; Robinson, Prudence; Corti, Andrea; Szell, Michael; Streets, David; Lu, Zifeng; Britter, Rex; Barrett, Steven R. H.; Ratti, Carlo

    2016-09-01

    Air pollution related to traffic emissions pose an especially significant problem in cities; this is due to its adverse impact on human health and well-being. Previous studies which have aimed to quantify emissions from the transportation sector have been limited by either simulated or coarsely resolved traffic volume data. Emissions inventories form the basis of urban pollution models, therefore in this study, Global Positioning System (GPS) trajectory data from a taxi fleet of over 15,000 vehicles were analyzed with the aim of predicting air pollution emissions for Singapore. This novel approach enabled the quantification of instantaneous drive cycle parameters in high spatio-temporal resolution, which provided the basis for a microscopic emissions model. Carbon dioxide (CO2), nitrogen oxides (NOx), volatile organic compounds (VOCs) and particulate matter (PM) emissions were thus estimated. Highly localized areas of elevated emissions levels were identified, with a spatio-temporal precision not possible with previously used methods for estimating emissions. Relatively higher emissions areas were mainly concentrated in a few districts that were the Singapore Downtown Core area, to the north of the central urban region and to the east of it. Daily emissions quantified for the total motor vehicle population of Singapore were found to be comparable to another emissions dataset. Results demonstrated that high-resolution spatio-temporal vehicle traces detected using GPS in large taxi fleets could be used to infer highly localized areas of elevated acceleration and air pollution emissions in cities, and may become a complement to traditional emission estimates, especially in emerging cities and countries where reliable fine-grained urban air quality data is not easily available. This is the first study of its kind to investigate measured microscopic vehicle movement in tandem with microscopic emissions modeling for a substantial study domain.

  6. Relating the microscopic rules in coalescence-fragmentation models to the cluster-size distribution

    NASA Astrophysics Data System (ADS)

    Ruszczycki, B.; Burnett, B.; Zhao, Z.; Johnson, N. F.

    2009-11-01

    Coalescence-fragmentation problems are now of great interest across the physical, biological, and social sciences. They are typically studied from the perspective of rate equations, at the heart of which are the rules used for coalescence and fragmentation. Here we discuss how changes in these microscopic rules affect the macroscopic cluster-size distribution which emerges from the solution to the rate equation. Our analysis elucidates the crucial role that the fragmentation rule can play in such dynamical grouping models. We focus our discussion on two well-known models whose fragmentation rules lie at opposite extremes. In particular, we provide a range of generalizations and new analytic results for the well-known model of social group formation developed by Eguíluz and Zimmermann, [Phys. Rev. Lett. 85, 5659 (2000)]. We develop analytic perturbation treatments of this original model, and extend the analytic analysis to the treatment of growing and declining populations.

  7. SPY: A new scission point model based on microscopic ingredients to predict fission fragments properties

    NASA Astrophysics Data System (ADS)

    Lemaître, J.-F.; Dubray, N.; Hilaire, S.; Panebianco, S.; Sida, J.-L.

    2013-12-01

    Our purpose is to determine fission fragments characteristics in a framework of a scission point model named SPY for Scission Point Yields. This approach can be considered as a theoretical laboratory to study fission mechanism since it gives access to the correlation between the fragments properties and their nuclear structure, such as shell correction, pairing, collective degrees of freedom, odd-even effects. Which ones are dominant in final state? What is the impact of compound nucleus structure? The SPY model consists in a statistical description of the fission process at the scission point where fragments are completely formed and well separated with fixed properties. The most important property of the model relies on the nuclear structure of the fragments which is derived from full quantum microscopic calculations. This approach allows computing the fission final state of extremely exotic nuclei which are inaccessible by most of the fission model available on the market.

  8. Microscopic model of the timelike electromagnetic form factor of the nucleon

    SciTech Connect

    Doenges, H.C.; Schaefer, M.; Mosel, U. )

    1995-02-01

    A microscopic model of the electromagnetic form factor of the nucleon is developed in a hadronic framework, including pions, nucleons and the [Delta]-resonance explicitly. The spacelike on-shell form factors are reproduced and predictions for the half off-shell dependence are made. The impact of this off-shell dependence in the time like sector ([ital q][sup 2][lt]1 GeV[sup 2], thus including the region of vector meson dominance) is of main interest in this investigation.

  9. Optical Hall effect-model description: tutorial.

    PubMed

    Schubert, Mathias; Kühne, Philipp; Darakchieva, Vanya; Hofmann, Tino

    2016-08-01

    The optical Hall effect is a physical phenomenon that describes the occurrence of magnetic-field-induced dielectric displacement at optical wavelengths, transverse and longitudinal to the incident electric field, and analogous to the static electrical Hall effect. The electrical Hall effect and certain cases of the optical Hall effect observations can be explained by extensions of the classic Drude model for the transport of electrons in metals. The optical Hall effect is most useful for characterization of electrical properties in semiconductors. Among many advantages, while the optical Hall effect dispenses with the need of electrical contacts, electrical material properties such as effective mass and mobility parameters, including their anisotropy as well as carrier type and density, can be determined from the optical Hall effect. Measurement of the optical Hall effect can be performed within the concept of generalized ellipsometry at an oblique angle of incidence. In this paper, we review and discuss physical model equations, which can be used to calculate the optical Hall effect in single- and multiple-layered structures of semiconductor materials. We define the optical Hall effect dielectric function tensor, demonstrate diagonalization approaches, and show requirements for the optical Hall effect tensor from energy conservation. We discuss both continuum and quantum approaches, and we provide a brief description of the generalized ellipsometry concept, the Mueller matrix calculus, and a 4×4 matrix algebra to calculate data accessible by experiment. In a follow-up paper, we will discuss strategies and approaches for experimental data acquisition and analysis. PMID:27505654

  10. Nonequilibrium structure and dynamics in a microscopic model of thin-film active gels

    NASA Astrophysics Data System (ADS)

    Head, D. A.; Briels, W. J.; Gompper, Gerhard

    2014-03-01

    In the presence of adenosine triphosphate, molecular motors generate active force dipoles that drive suspensions of protein filaments far from thermodynamic equilibrium, leading to exotic dynamics and pattern formation. Microscopic modeling can help to quantify the relationship between individual motors plus filaments to organization and dynamics on molecular and supramolecular length scales. Here, we present results of extensive numerical simulations of active gels where the motors and filaments are confined between two infinite parallel plates. Thermal fluctuations and excluded-volume interactions between filaments are included. A systematic variation of rates for motor motion, attachment, and detachment, including a differential detachment rate from filament ends, reveals a range of nonequilibrium behavior. Strong motor binding produces structured filament aggregates that we refer to as asters, bundles, or layers, whose stability depends on motor speed and differential end detachment. The gross features of the dependence of the observed structures on the motor rate and the filament concentration can be captured by a simple one-filament model. Loosely bound aggregates exhibit superdiffusive mass transport, where filament translocation scales with lag time with nonunique exponents that depend on motor kinetics. An empirical data collapse of filament speed as a function of motor speed and end detachment is found, suggesting a dimensional reduction of the relevant parameter space. We conclude by discussing the perspectives of microscopic modeling in the field of active gels.

  11. Nonequilibrium structure and dynamics in a microscopic model of thin-film active gels.

    PubMed

    Head, D A; Briels, W J; Gompper, Gerhard

    2014-03-01

    In the presence of adenosine triphosphate, molecular motors generate active force dipoles that drive suspensions of protein filaments far from thermodynamic equilibrium, leading to exotic dynamics and pattern formation. Microscopic modeling can help to quantify the relationship between individual motors plus filaments to organization and dynamics on molecular and supramolecular length scales. Here, we present results of extensive numerical simulations of active gels where the motors and filaments are confined between two infinite parallel plates. Thermal fluctuations and excluded-volume interactions between filaments are included. A systematic variation of rates for motor motion, attachment, and detachment, including a differential detachment rate from filament ends, reveals a range of nonequilibrium behavior. Strong motor binding produces structured filament aggregates that we refer to as asters, bundles, or layers, whose stability depends on motor speed and differential end detachment. The gross features of the dependence of the observed structures on the motor rate and the filament concentration can be captured by a simple one-filament model. Loosely bound aggregates exhibit superdiffusive mass transport, where filament translocation scales with lag time with nonunique exponents that depend on motor kinetics. An empirical data collapse of filament speed as a function of motor speed and end detachment is found, suggesting a dimensional reduction of the relevant parameter space. We conclude by discussing the perspectives of microscopic modeling in the field of active gels. PMID:24730872

  12. The Light Microscope.

    ERIC Educational Resources Information Center

    Baker, W. L.

    1995-01-01

    Describes the function of the various parts of the microscope and their integration in the formation of an optical image. Presents a procedure for setting up a microscope to obtain maximum resolution and contrast for each objective lens at all magnifications. (JRH)

  13. Photography through the Microscope.

    ERIC Educational Resources Information Center

    McNeil, D. W.

    1992-01-01

    Describes how to illuminate and optically stain slides for microscope use and how to interface a 35mm camera with a microscope using an adaptor. Provides equipment descriptions and sources, details about illumination, image formation, darkfield adaptors, centerable filter adaptors, darkfield stops, rheinburg filters, and choosing specimens to…

  14. Pulse electrochemical machining on Invar alloy: Optical microscopic/SEM and non-contact 3D measurement study of surface analyses

    NASA Astrophysics Data System (ADS)

    Kim, S. H.; Choi, S. G.; Choi, W. K.; Yang, B. Y.; Lee, E. S.

    2014-09-01

    In this study, Invar alloy (Fe 63.5%, Ni 36.5%) was electrochemically polished by PECM (Pulse Electro Chemical Machining) in a mixture of NaCl, glycerin, and distilled water. A series of PECM experiments were carried out with different voltages and different electrode shapes, and then the surfaces of polished Invar alloy were investigated. The polished Invar alloy surfaces were investigated by optical microscope, scanning electron microscope (SEM), and non-contact 3D measurement (white light microscopes) and it was found that different applied voltages produced different surface characteristics on the Invar alloy surface because of the locally concentrated applied voltage on the Invar alloy surface. Moreover, we found that the shapes of electrode also have an effect on the surface characteristics on Invar alloy surface by influencing the applied voltage. These experimental findings provide fundamental knowledge for PECM of Invar alloy by surface analysis.

  15. Assessment of Petrological Microscopes.

    ERIC Educational Resources Information Center

    Mathison, Charter Innes

    1990-01-01

    Presented is a set of procedures designed to check the design, ergonomics, illumination, function, optics, accessory equipment, and image quality of a microscope being considered for purchase. Functions for use in a petrology or mineralogy laboratory are stressed. (CW)

  16. Optical Storage Performance Modeling and Evaluation.

    ERIC Educational Resources Information Center

    Behera, Bailochan; Singh, Harpreet

    1990-01-01

    Evaluates different types of storage media for long-term archival storage of large amounts of data. Existing storage media are reviewed, including optical disks, optical tape, magnetic storage, and microfilm; three models are proposed based on document storage requirements; performance analysis is considered; and cost effectiveness is discussed.…

  17. Interpretation of the Palumbo model of two axial rotators in the microscopic approach

    SciTech Connect

    Filippov, G.F.; Dotsenko, I.S.

    1994-12-01

    The nuclear model of two axial rotators is interpreted as a generalization of the Elliott SU{sub 3} model. The basis of the latter is extended to the basis of the tensor product SU{sub 3} x SU{sub 3}. For this purpose, the second-order Casimir operator of the SU{sub 3} group is constructed, and its eigenfunctions are found in the explicit form. The probabilities of the isoscalar and isovector M1 and E2 electromagnetic transitions between nuclear states with the quantum numbers ({lambda},{mu}) = (2n,0) and ({lambda},{mu}) = (2n-2,1) are calculated using the microscopic wave functions of the model. The calculated values of the transition probabilities and widths of levels for {sup 8}Be and {sup 20}Ne nuclei are compared with the experimental data. 17 refs., 5 tabs.

  18. Rate turnover in mechano-catalytic coupling: A model and its microscopic origin

    SciTech Connect

    Roy, Mahua; Grazioli, Gianmarc; Andricioaei, Ioan

    2015-07-28

    A novel aspect in the area of mechano-chemistry concerns the effect of external forces on enzyme activity, i.e., the existence of mechano-catalytic coupling. Recent experiments on enzyme-catalyzed disulphide bond reduction in proteins under the effect of a force applied on the termini of the protein substrate reveal an unexpected biphasic force dependence for the bond cleavage rate. Here, using atomistic molecular dynamics simulations combined with Smoluchowski theory, we propose a model for this behavior. For a broad range of forces and systems, the model reproduces the experimentally observed rates by solving a reaction-diffusion equation for a “protein coordinate” diffusing in a force-dependent effective potential. The atomistic simulations are used to compute, from first principles, the parameters of the model via a quasiharmonic analysis. Additionally, the simulations are also used to provide details about the microscopic degrees of freedom that are important for the underlying mechano-catalysis.

  19. Relating multichannel scattering and production amplitudes in a microscopic OZI-based model

    SciTech Connect

    Beveren, Eef van Rupp, George

    2008-05-15

    Relations between scattering and production amplitudes are studied in a microscopic multichannel model for meson-meson scattering, with coupling to confined quark-antiquark channels. Overlapping resonances and a proper threshold behaviour are treated exactly in the model. Under the spectator assumption, it is found that the two-particle production amplitude shares a common denominator with the elastic scattering amplitude, besides a numerator consisting of a linear combination of all elastic and some inelastic matrix elements. The coefficients in these linear combinations are shown to be generally complex. Finally, the standard operator expressions relating production and scattering amplitudes, viz. A=T/VandIm(A)=T*A, are fulfilled, while in the small-coupling limit the usual isobar model is recovered.

  20. SPY: a new scission-point model based on microscopic inputs to predict fission fragment properties

    NASA Astrophysics Data System (ADS)

    Panebianco, Stefano; Dubray, Nöel; Goriely, Stéphane; Hilaire, Stéphane; Lemaître, Jean-François; Sida, Jean-Luc

    2014-04-01

    Despite the difficulty in describing the whole fission dynamics, the main fragment characteristics can be determined in a static approach based on a so-called scission-point model. Within this framework, a new Scission-Point model for the calculations of fission fragment Yields (SPY) has been developed. This model, initially based on the approach developed by Wilkins in the late seventies, consists in performing a static energy balance at scission, where the two fragments are supposed to be completely separated so that their macroscopic properties (mass and charge) can be considered as fixed. Given the knowledge of the system state density, averaged quantities such as mass and charge yields, mean kinetic and excitation energy can then be extracted in the framework of a microcanonical statistical description. The main advantage of the SPY model is the introduction of one of the most up-to-date microscopic descriptions of the nucleus for the individual energy of each fragment and, in the future, for their state density. These quantities are obtained in the framework of HFB calculations using the Gogny nucleon-nucleon interaction, ensuring an overall coherence of the model. Starting from a description of the SPY model and its main features, a comparison between the SPY predictions and experimental data will be discussed for some specific cases, from light nuclei around mercury to major actinides. Moreover, extensive predictions over the whole chart of nuclides will be discussed, with particular attention to their implication in stellar nucleosynthesis. Finally, future developments, mainly concerning the introduction of microscopic state densities, will be briefly discussed.

  1. Dynamics of basaltic glass dissolution - Capturing microscopic effects in continuum scale models

    NASA Astrophysics Data System (ADS)

    Aradóttir, E. S. P.; Sigfússon, B.; Sonnenthal, E. L.; Björnsson, G.; Jónsson, H.

    2013-11-01

    The method of 'multiple interacting continua' (MINC) was applied to include microscopic rate-limiting processes in continuum scale reactive transport models of basaltic glass dissolution. The MINC method involves dividing the system up to ambient fluid and grains, using a specific surface area to describe the interface between the two. The various grains and regions within grains can then be described by dividing them into continua separated by dividing surfaces. Millions of grains can thus be considered within the method without the need to explicity discretizing them. Four continua were used for describing a dissolving basaltic glass grain; the first one describes the ambient fluid around the grain, while the second, third and fourth continuum refer to a diffusive leached layer, the dissolving part of the grain and the inert part of the grain, respectively. The model was validated using the TOUGHREACT simulator and data from column flow through experiments of basaltic glass dissolution at low, neutral and high pH values. Successful reactive transport simulations of the experiments and overall adequate agreement between measured and simulated values provides validation that the MINC approach can be applied for incorporating microscopic effects in continuum scale basaltic glass dissolution models. Equivalent models can be used when simulating dissolution and alteration of other minerals. The study provides an example of how numerical modeling and experimental work can be combined to enhance understanding of mechanisms associated with basaltic glass dissolution. Column outlet concentrations indicated basaltic glass to dissolve stoichiometrically at pH 3. Predictive simulations with the developed MINC model indicated significant precipitation of secondary minerals within the column at neutral and high pH, explaining observed non-stoichiometric outlet concentrations at these pH levels. Clay, zeolite and hydroxide precipitation was predicted to be most abundant within

  2. Steepest-entropy-ascent quantum thermodynamic modeling of decoherence in two different microscopic composite systems

    NASA Astrophysics Data System (ADS)

    Cano-Andrade, Sergio; Beretta, Gian Paolo; von Spakovsky, Michael R.

    2015-01-01

    The steepest-entropy-ascent quantum thermodynamic (SEAQT) framework is used to model the decoherence that occurs during the state evolution of two different microscopic composite systems. The test cases are a two-spin-1/2-particle composite system and a particle-photon field composite system like that experimentally studied in cavity quantum electrodynamics. The first system is used to study the characteristics of the nonlinear equation of motion of the SEAQT framework when modeling the state evolution of a microscopic composite system with particular interest in the phenomenon of decoherence. The second system is used to compare the numerical predictions of the SEAQT framework with experimental cavity quantum electrodynamic data available in the literature. For the two different numerical cases presented, the time evolution of the density operator of the composite system as well as that of the reduced operators belonging to the two constituents is traced from an initial nonequilibrium state of the composite along its relaxation towards stable equilibrium. Results show for both cases how the initial entanglement and coherence is dissipated during the state relaxation towards a state of stable equilibrium.

  3. 3D registration of intravascular optical coherence tomography and cryo-image volumes for microscopic-resolution validation

    NASA Astrophysics Data System (ADS)

    Prabhu, David; Mehanna, Emile; Gargesha, Madhusudhana; Wen, Di; Brandt, Eric; van Ditzhuijzen, Nienke S.; Chamie, Daniel; Yamamoto, Hirosada; Fujino, Yusuke; Farmazilian, Ali; Patel, Jaymin; Costa, Marco; Bezerra, Hiram G.; Wilson, David L.

    2016-03-01

    High resolution, 100 frames/sec intravascular optical coherence tomography (IVOCT) can distinguish plaque types, but further validation is needed, especially for automated plaque characterization. We developed experimental and 3D registration methods, to provide validation of IVOCT pullback volumes using microscopic, brightfield and fluorescent cryoimage volumes, with optional, exactly registered cryo-histology. The innovation was a method to match an IVOCT pullback images, acquired in the catheter reference frame, to a true 3D cryo-image volume. Briefly, an 11-parameter, polynomial virtual catheter was initialized within the cryo-image volume, and perpendicular images were extracted, mimicking IVOCT image acquisition. Virtual catheter parameters were optimized to maximize cryo and IVOCT lumen overlap. Local minima were possible, but when we started within reasonable ranges, every one of 24 digital phantom cases converged to a good solution with a registration error of only +1.34+/-2.65μm (signed distance). Registration was applied to 10 ex-vivo cadaver coronary arteries (LADs), resulting in 10 registered cryo and IVOCT volumes yielding a total of 421 registered 2D-image pairs. Image overlays demonstrated high continuity between vascular and plaque features. Bland- Altman analysis comparing cryo and IVOCT lumen area, showed mean and standard deviation of differences as 0.01+/-0.43 mm2. DICE coefficients were 0.91+/-0.04. Finally, visual assessment on 20 representative cases with easily identifiable features suggested registration accuracy within one frame of IVOCT (+/-200μm), eliminating significant misinterpretations introduced by 1mm errors in the literature. The method will provide 3D data for training of IVOCT plaque algorithms and can be used for validation of other intravascular imaging modalities.

  4. 3D registration of intravascular optical coherence tomography and cryo-image volumes for microscopic-resolution validation

    PubMed Central

    Prabhu, David; Mehanna, Emile; Gargesha, Madhusudhana; Wen, Di; Brandt, Eric; van Ditzhuijzen, Nienke S.; Chamie, Daniel; Yamamoto, Hirosada; Fujino, Yusuke; Farmazilian, Ali; Patel, Jaymin; Costa, Marco; Bezerra, Hiram G.; Wilson, David L.

    2016-01-01

    High resolution, 100 frames/sec intravascular optical coherence tomography (IVOCT) can distinguish plaque types, but further validation is needed, especially for automated plaque characterization. We developed experimental and 3D registration methods, to provide validation of IVOCT pullback volumes using microscopic, brightfield and fluorescent cryo-image volumes, with optional, exactly registered cryo-histology. The innovation was a method to match an IVOCT pull-back images, acquired in the catheter reference frame, to a true 3D cryo-image volume. Briefly, an 11-parameter, polynomial virtual catheter was initialized within the cryo-image volume, and perpendicular images were extracted, mimicking IVOCT image acquisition. Virtual catheter parameters were optimized to maximize cryo and IVOCT lumen overlap. Local minima were possible, but when we started within reasonable ranges, every one of 24 digital phantom cases converged to a good solution with a registration error of only +1.34±2.65μm (signed distance). Registration was applied to 10 ex-vivo cadaver coronary arteries (LADs), resulting in 10 registered cryo and IVOCT volumes yielding a total of 421 registered 2D-image pairs. Image overlays demonstrated high continuity between vascular and plaque features. Bland-Altman analysis comparing cryo and IVOCT lumen area, showed mean and standard deviation of differences as 0.01±0.43 mm2. DICE coefficients were 0.91±0.04. Finally, visual assessment on 20 representative cases with easily identifiable features suggested registration accuracy within one frame of IVOCT (±200μm), eliminating significant misinterpretations introduced by 1mm errors in the literature. The method will provide 3D data for training of IVOCT plaque algorithms and can be used for validation of other intravascular imaging modalities. PMID:27162417

  5. Intrasurgical Human Retinal Imaging With Manual Instrument Tracking Using a Microscope-Integrated Spectral-Domain Optical Coherence Tomography Device

    PubMed Central

    Hahn, Paul; Carrasco-Zevallos, Oscar; Cunefare, David; Migacz, Justin; Farsiu, Sina; Izatt, Joseph A.; Toth, Cynthia A.

    2015-01-01

    Purpose: To characterize the first in-human intraoperative imaging using a custom prototype spectral-domain microscope-integrated optical coherence tomography (MIOCT) device during vitreoretinal surgery with instruments in the eye. Methods: Under institutional review board approval for a prospective intraoperative study, MIOCT images were obtained at surgical pauses with instruments held static in the vitreous cavity and then concurrently with surgical maneuvers. Postoperatively, MIOCT images obtained at surgical pauses were compared with images obtained with a high-resolution handheld spectral-domain OCT (HHOCT) system with objective endpoints, including acquisition of images acceptable for analysis and identification of predefined macular morphologic or pathologic features. Results: Human MIOCT images were successfully obtained before incision and during pauses in surgical maneuvers. MIOCT imaging confirmed preoperative diagnoses, such as epiretinal membrane, full-thickness macular hole, and vitreomacular traction and demonstrated successful achievement of surgical goals. MIOCT and HHOCT images obtained at surgical pauses in two cohorts of five patients were comparable with greater than or equal to 80% correlation in 80% of patients. Real-time video-imaging concurrent with surgical manipulations enabled, for the first time using this device, visualization of dynamic instrument-retina interaction with targeted OCT tracking. Conclusion: MIOCT is successful for imaging at surgical pauses and for real-time image guidance with implementation of targeted OCT tracking. Even faster acquisition speeds are currently being developed with incorporation of a swept-source MIOCT engine. Further refinements and investigations will be directed toward continued integration for real-time volumetric imaging of surgical maneuvers. Translational Relevance: Ongoing development of seamless MIOCT systems will likely transform surgical visualization, approaches, and decision-making. PMID

  6. Use of Panitumumab-IRDye800 to Image Microscopic Head and Neck Cancer in an Orthotopic Surgical Model

    PubMed Central

    Heath, C. Hope; Deep, Nicholas L.; Sweeny, Larissa; Zinn, Kurt R; Rosenthal, Eben L.

    2013-01-01

    Background Fluorescence imaging hardware (SPY) has recently been developed for intraoperative assessment of blood flow via detection of probes emitting in the near-infrared (NIR) spectrum. This study sought to determine if this imaging system was capable of detecting micrometastatic head and neck squamous cell carcinoma (HNSCC) in preclinical models. Methods A NIR fluorescent probe (IRDye800CW) was covalently linked to a monoclonal antibody targeting EGFR (panitumumab) or non-specific IgG. HNSCC flank (SCC-1) and orthotopic (FADU and OSC19) xenografts were imaged 48-96hrs following systemic injection of labeled panitumumab or IgG. The primary tumor and regional lymph nodes were dissected using fluorescence guidance with the SPY system and grossly assessed with a charge-coupled NIR system (Pearl). Histologic slides were also imaged with a NIR charged-coupled device (Odyssey) and fluorescence intensity was correlated with pathologic confirmation of disease. Results Orthotopic tongue tumors were clearly delineated from normal tissue with tumor-to-background ratios of 2.9(Pearl) and 2.3(SPY). Disease detection was significantly improved with panitumumab-IRDye compared to IgG-IRDye800 (P<0.05). Tissue biopsies (average size=3.7mm) positive for fluorescence were confirmed for pathologic disease by histology and immunohistochemistry (n=25/25). Biopsies of non-fluorescent tissue were proven to be negative for malignancy (n=28/28). The SPY was able to detect regional lymph node metastasis (<1.0mm) and microscopic areas of disease. Standard histological assessment in both frozen and paraffin-embedded histologic specimens was augmented using the Odyssey. Conclusions Panitumumab-IRDye800 may have clinical utility in detection and removal of microscopic HNSCC using existing intraoperative optical imaging hardware and may augment analysis of frozen and permanent pathology. PMID:22669455

  7. Neural network model for extracting optic flow.

    PubMed

    Tohyama, Kazuya; Fukushima, Kunihiko

    2005-01-01

    When we travel in an environment, we have an optic flow on the retina. Neurons in the area MST of macaque monkeys are reported to have a very large receptive field and analyze optic flows on the retina. Many MST-cells respond selectively to rotation, expansion/contraction and planar motion of the optic flow. Many of them show position-invariant responses to optic flow, that is, their responses are maintained during the shift of the center of the optic flow. It has long been suggested mathematically that vector-field calculus is useful for analyzing optic flow field. Biologically, plausible neural network models based on this idea, however, have little been proposed so far. This paper, based on vector-field hypothesis, proposes a neural network model for extracting optic flows. Our model consists of hierarchically connected layers: retina, V1, MT and MST. V1-cells measure local velocity. There are two kinds of MT-cell: one is for extracting absolute velocities, the other for extracting relative velocities with their antagonistic inputs. Collecting signals from MT-cells, MST-cells respond selectively to various types of optic flows. We demonstrate through a computer simulation that this simple network is enough to explain a variety of results of neurophysiological experiments. PMID:16112546

  8. Polarization-sensitive characterization of the propagating plasmonic modes in silver nanowire waveguide on a glass substrate with a scanning near-field optical microscope.

    PubMed

    Venugopalan, Priyamvada; Zhang, Qiming; Li, Xiangping; Gu, Min

    2013-07-01

    In this paper, we report on the experimental investigation of the polarization properties of the plasmonic modes along a silver nanowire waveguide on a glass substrate. Two orthogonal polarization light components at the distal end of the nanowire are observed in the far-field. The near-field mapping with a scanning near-field optical microscopic probe exhibiting an in-plane polarization sensitivity reveals the two polarization components of the propagating plasmonic modes along the nanowire. PMID:23842310

  9. A Microscopic “Social Norm” Model to Obtain Realistic Macroscopic Velocity and Density Pedestrian Distributions

    PubMed Central

    Zanlungo, Francesco; Ikeda, Tetsushi; Kanda, Takayuki

    2012-01-01

    We propose a way to introduce in microscopic pedestrian models a “social norm” in collision avoiding and overtaking, i.e. the tendency, shared by pedestrians belonging to the same culture, to avoid collisions and perform overtaking in a preferred direction. The “social norm” is implemented, regardless of the specific collision avoiding model, as a rotation in the perceived velocity vector of the opponent at the moment of computation of the collision avoiding strategy, and justified as an expectation that the opponent will follow the same “social norm” (for example a tendency to avoid on the left and overtake on the right, as proposed in this work for Japanese pedestrians). By comparing with real world data, we show that the introduction of this norm allows for a better reproduction of macroscopic pedestrian density and velocity patterns. PMID:23227202

  10. New deconvolution method for microscopic images based on the continuous Gaussian radial basis function interpolation model

    NASA Astrophysics Data System (ADS)

    Chen, Zhaoxue; Chen, Hao

    2014-07-01

    A deconvolution method based on the Gaussian radial basis function (GRBF) interpolation is proposed. Both the original image and Gaussian point spread function are expressed as the same continuous GRBF model, thus image degradation is simplified as convolution of two continuous Gaussian functions, and image deconvolution is converted to calculate the weighted coefficients of two-dimensional control points. Compared with Wiener filter and Lucy-Richardson algorithm, the GRBF method has an obvious advantage in the quality of restored images. In order to overcome such a defect of long-time computing, the method of graphic processing unit multithreading or increasing space interval of control points is adopted, respectively, to speed up the implementation of GRBF method. The experiments show that based on the continuous GRBF model, the image deconvolution can be efficiently implemented by the method, which also has a considerable reference value for the study of three-dimensional microscopic image deconvolution.

  11. Modeling of Macroscopic/Microscopic Transport and Growth Phenomena in Zeolite Crystal Solutions Under Microgravity Conditions

    NASA Technical Reports Server (NTRS)

    Gatsonis, Nikos A.; Alexandrou, Andreas; Shi, Hui; Ongewe, Bernard; Sacco, Albert, Jr.

    1999-01-01

    . At the same time, however, there is increased urgency to develop such an understanding in order to more accurately quantify the process. In order to better understand the results obtained from our prior space experiments, and design future experiments, a detailed fluid dynamic model simulating the crystal growth mechanism is required. This will not only add to the fundamental knowledge on the crystallization of zeolites, but also be useful in predicting the limits of size and growth of these important industrial materials. Our objective is to develop macro/microscopic theoretical and computational models to study the effect of transport phenomena in the growth of crystals grown in solutions. Our effort has concentrated so far in the development of separate macroscopic and microscopic models. The major highlights of our accomplishments are described.

  12. A stacking-fault based microscopic model for platelets in diamond

    NASA Astrophysics Data System (ADS)

    Antonelli, Alex; Nunes, Ricardo

    2005-03-01

    We propose a new microscopic model for the 001 planar defects in diamond commonly called platelets. This model is based on the formation of a metastable stacking fault, which can occur because of the ability of carbon to stabilize in different bonding configurations. In our model the core of the planar defect is basically a double layer of three-fold coordinated sp^2 carbon atoms embedded in the common sp^3 diamond structure. The properties of the model were determined using ab initio total energy calculations. All significant experimental signatures attributed to the platelets, namely, the lattice displacement along the [001] direction, the asymmetry between the [110] and the [11 0] directions, the infrared absorption peak B^' , and broad luminescence lines that indicate the introduction of levels in the band gap, are naturally accounted for in our model. The model is also very appealing from the point of view of kinetics, since naturally occurring shearing processes will lead to the formation of the metastable fault.Authors acknowledge financial support from the Brazilian agencies FAPESP, CNPq, FAEP-UNICAMP, FAPEMIG, and Instituto do Milênio em Nanociências-MCT

  13. Calibration of microscopic traffic-flow models using multiple data sources.

    PubMed

    Hoogendoorn, Serge; Hoogendoorn, Raymond

    2010-10-13

    Parameter identification of microscopic driving models is a difficult task. This is caused by the fact that parameters--such as reaction time, sensitivity to stimuli, etc.--are generally not directly observable from common traffic data, but also due to the lack of reliable statistical estimation techniques. This contribution puts forward a new approach to identifying parameters of car-following models. One of the main contributions of this article is that the proposed approach allows for joint estimation of parameters using different data sources, including prior information on parameter values (or the valid range of values). This is achieved by generalizing the maximum-likelihood estimation approach proposed by the authors in previous work. The approach allows for statistical analysis of the parameter estimates, including the standard error of the parameter estimates and the correlation of the estimates. Using the likelihood-ratio test, models of different complexity (defined by the number of model parameters) can be cross-compared. A nice property of this test is that it takes into account the number of parameters of a model as well as the performance. To illustrate the workings, the approach is applied to two car-following models using vehicle trajectories of a Dutch freeway collected from a helicopter, in combination with data collected with a driving simulator. PMID:20819819

  14. Optical modeling of liquid crystal biosensors

    NASA Astrophysics Data System (ADS)

    Hwang, Dae Kun; Rey, Alejandro D.

    2006-11-01

    Optical simulations of a liquid crystal biosensor device are performed using an integrated optical/textural model based on the equations of nematodynamics and two optical methods: the Berreman optical matrix method [J. Opt. Soc. Am. 62, 502 (1972)] and the discretization of the Maxwell equations based on the finite difference time domain (FDTD) method. Testing the two optical methods with liquid crystal films of different degrees of orientational heterogeneities demonstrates that only the FDTD method is suitable to model this device. Basic substrate-induced texturing process due to protein adsorption gives rise to an orientation correlation function that is nearly linear with the transmitted light intensity, providing a basis to calibrate the device. The sensitivity of transmitted light to film thickness, protein surface coverage, and wavelength is established. A crossover incident light wavelength close to λco≈500nm is found, such that when λ >λco thinner films are more sensitive to the amount of protein surface coverage, while for λ <λco the reverse holds. In addition it is found that for all wavelengths the sensitivity increases with the amount of protein coverage. The integrated device model based on FDTD optical simulations in conjunction with the Landau-de Gennes nematodynamics model provides a rational basis for further progress in liquid crystal biosensor devices.

  15. A Semi-Classical, Microscopic Model for Nuclear Collective Rotation Plus RPA

    SciTech Connect

    Gulshani, P.

    2007-04-28

    Collective rotation and vibration of deformed nuclei are described semiclassically but microscopically by first transforming the time-dependent Schrodinger equation to a rotating frame, while preserving time-reversal invariance, and then applying a variational method. The rotating-frame axes are chosen to coincide with the principal axes of the expectation of an arbitrary, symmetric second-rank tensor operator {gamma}. It is shown that the equations derived for the rotational and vibrational motions decouple completely due to the rotational invariance of the Hamiltonian and diagonality of the expectation of {gamma} in the rotating frame. The equations describing the vibration reduce to those of the RPA. The equation describing the rotation generalizes that of the conventional cranking model (CM). The predicted rotation moment of inertia is shown to reduce to that of the CM for special types of particle interactions.

  16. Capillarity of soft amorphous solids: a microscopic model for surface stress.

    PubMed

    Weijs, Joost H; Snoeijer, Jacco H; Andreotti, Bruno

    2014-04-01

    The elastic deformation of a soft solid induced by capillary forces crucially relies on the excess stress inside the solid-liquid interface. While for a liquid-liquid interface this "surface stress" is strictly identical to the "surface free energy," the thermodynamic Shuttleworth equation implies that this is no longer the case when one of the phases is elastic. Here we develop a microscopic model that incorporates enthalpic interactions and entropic elasticity, based on which we explicitly compute as the surface stress and surface free energy. It is found that the compressibility of the interfacial region, through the Poisson ratio near the interface, determines the difference between surface stress and surface energy. We highlight the consequence of this finding by comparing with recent experiments and simulations on partially wetted soft substrates. PMID:24827261

  17. A microscopic derivation of nuclear collective rotation-vibration model and its application to nuclei

    NASA Astrophysics Data System (ADS)

    Gulshani, P.

    2016-07-01

    We derive a microscopic version of the successful phenomenological hydrodynamic model of Bohr-Davydov-Faessler-Greiner for collective rotation-vibration motion of an axially symmetric deformed nucleus. The derivation is not limited to small oscillation amplitude. The nuclear Schrodinger equation is canonically transformed to collective co-ordinates, which is then linearized using a constrained variational method. The associated constraints are imposed on the wavefunction rather than on the particle co-ordinates. The approach yields three self-consistent, time-reversal invariant, cranking-type Schrodinger equations for the rotation-vibration and intrinsic motions, and a self-consistency equation. For harmonic oscillator mean-field potentials, these equations are solved in closed forms for excitation energy, cut-off angular momentum, and other nuclear properties for the ground-state rotational band in some deformed nuclei. The results are compared with measured data.

  18. Measurement with microscopic MRI and simulation of flow in different aneurysm models

    SciTech Connect

    Edelhoff, Daniel Frank, Frauke; Heil, Marvin; Suter, Dieter; Walczak, Lars; Weichert, Frank; Schmitz, Inge

    2015-10-15

    Purpose: The impact and the development of aneurysms depend to a significant degree on the exchange of liquid between the regular vessel and the pathological extension. A better understanding of this process will lead to improved prediction capabilities. The aim of the current study was to investigate fluid-exchange in aneurysm models of different complexities by combining microscopic magnetic resonance measurements with numerical simulations. In order to evaluate the accuracy and applicability of these methods, the fluid-exchange process between the unaltered vessel lumen and the aneurysm phantoms was analyzed quantitatively using high spatial resolution. Methods: Magnetic resonance flow imaging was used to visualize fluid-exchange in two different models produced with a 3D printer. One model of an aneurysm was based on histological findings. The flow distribution in the different models was measured on a microscopic scale using time of flight magnetic resonance imaging. The whole experiment was simulated using fast graphics processing unit-based numerical simulations. The obtained simulation results were compared qualitatively and quantitatively with the magnetic resonance imaging measurements, taking into account flow and spin–lattice relaxation. Results: The results of both presented methods compared well for the used aneurysm models and the chosen flow distributions. The results from the fluid-exchange analysis showed comparable characteristics concerning measurement and simulation. Similar symmetry behavior was observed. Based on these results, the amount of fluid-exchange was calculated. Depending on the geometry of the models, 7% to 45% of the liquid was exchanged per second. Conclusions: The result of the numerical simulations coincides well with the experimentally determined velocity field. The rate of fluid-exchange between vessel and aneurysm was well-predicted. Hence, the results obtained by simulation could be validated by the experiment. The

  19. Modelling a Peroxidase-based Optical Biosensor

    PubMed Central

    Baronas, Romas; Gaidamauskaite, Evelina; Kulys, Juozas

    2007-01-01

    The response of a peroxidase-based optical biosensor was modelled digitally. A mathematical model of the optical biosensor is based on a system of non-linear reaction-diffusion equations. The modelling biosensor comprises two compartments, an enzyme layer and an outer diffusion layer. The digital simulation was carried out using finite difference technique. The influence of the substrate concentration as well as of the thickness of both the enzyme and diffusion layers on the biosensor response was investigated. Calculations showed complex kinetics of the biosensor response, especially at low concentrations of the peroxidase and of the hydrogen peroxide.

  20. Microscopic modelling of opto-electronic properties of dilute bismide materials for the mid-IR

    NASA Astrophysics Data System (ADS)

    Hader, J.; Moloney, J. V.; Rubel, O.; Badescu, S. C.; Johnson, S.; Koch, S. W.

    2016-03-01

    Fully microscopic many-body models are used to determine important material characteristics of GaAsBi and InAsBi based devices. Calculations based on the band anti-crossing (BAC) model are compared to first principle density functional theory (DFT) results. Good agreement between BAC-based results and experimental data is found for properties that are dominated by states close to the bandgap, like absorption/gain and photo luminescence. Using the BAC model for properties that involve states in the energetic region of the BAC defect level, like Auger losses and free carrier absorption results in a sharp resonance in the dependence of these quantities for Bismuth concentrations for which the bandgap becomes resonant with the spin-orbit splitting or the BAC-splitting of the light and heavy hole bands. DFT calculations show that the BAC model strongly over-simplifies the influence of the bismuth atoms on the bandstructure. Taking into account the more realistic results of DFT calculations should lead to a reduction of the sharp resonance and lead to enhancements or suppressions for other Bismuth concentrations and spectral regions.

  1. A Microscopic Model for Diffusion of a Polymer Chain in the Entangled Regime

    NASA Astrophysics Data System (ADS)

    Canpolat, Murat; Erzan, Ayþe; Pekcan, Önder

    1997-01-01

    In the entangled regime the reptation concept [1,2] is the most successful in describing the dynamical behavior of a single chain. Using scaling concepts some quantities such as translational diffussion coefficient for the polymer center of mass Dtr, and renewal time {t} [3] have been calculated in the reptation model. This model is used for representing the low-frequency motions of a polymer molecule in a fluid of entangled chains, neglecting rapid relaxation processes that are attributed to local conformal transitions of backbone. Helfand and collabrators have studied the kinetics of conformational transitions in chain molecules, and they find that single-bond rotations followed by the compensating rearrangement of neigboring units are predominantly responsible for local motions [4]. Such models have also been considered by Erman and co-workers [5]. The purpose of this study to understand reptation at a microscopic level. We consedir rapid relaxation processes, that are singlet- or double -bond rotations; motion along the contour of the chain is due to displacments caused by rearangements of the neighboring units. We recover the usual scaling behavior of the diffusion coefficients and relaxation times with the chain mass. Moreover, the effective activation energy that is found from the local jump model for translational motion of the chain center of mass compares favorably with experiment and is independent of the molecular weight for large enough chains [6]. We are also able to account for the apparent temperature of this "activation energy".

  2. Modeling of coherent ultrafast magneto-optical experiments: Light-induced molecular mean-field model

    SciTech Connect

    Hinschberger, Y.; Hervieux, P.-A.

    2015-12-28

    We present calculations which aim to describe coherent ultrafast magneto-optical effects observed in time-resolved pump-probe experiments. Our approach is based on a nonlinear semi-classical Drude-Voigt model and is used to interpret experiments performed on nickel ferromagnetic thin film. Within this framework, a phenomenological light-induced coherent molecular mean-field depending on the polarizations of the pump and probe pulses is proposed whose microscopic origin is related to a spin-orbit coupling involving the electron spins of the material sample and the electric field of the laser pulses. Theoretical predictions are compared to available experimental data. The model successfully reproduces the observed experimental trends and gives meaningful insight into the understanding of magneto-optical rotation behavior in the ultrafast regime. Theoretical predictions for further experimental studies are also proposed.

  3. Analysis of a Thin Optical Lens Model

    ERIC Educational Resources Information Center

    Ivchenko, Vladimir V.

    2011-01-01

    In this article a thin optical lens model is considered. It is shown that the limits of its applicability are determined not only by the ratio between the thickness of the lens and the modules of the radii of curvature, but above all its geometric type. We have derived the analytical criteria for the applicability of the model for different types…

  4. Local detection efficiency of a NbN superconducting single photon detector explored by a scattering scanning near-field optical microscope.

    PubMed

    Wang, Qiang; Renema, Jelmer J; Engel, Andreas; van Exter, Martin P; de Dood, Michiel J A

    2015-09-21

    We propose an experiment to directly probe the local response of a superconducting single photon detector using a sharp metal tip in a scattering scanning near-field optical microscope. The optical absorption is obtained by simulating the tip-detector system, where the tip-detector is illuminated from the side, with the tip functioning as an optical antenna. The local detection efficiency is calculated by considering the recently introduced position-dependent threshold current in the detector. The calculated response for a 150 nm wide detector shows a peak close to the edge that can be spatially resolved with an estimated resolution of ∼ 20 nm, using a tip with parameters that are experimentally accessible. PMID:26406688

  5. Stereoscopic Video Microscope

    NASA Astrophysics Data System (ADS)

    Butterfield, James F.

    1980-11-01

    The new electronic technology of three-dimensional video combined with the established. science of microscopy has created. a new instrument. the Stereoscopic Video Microscope. The specimen is illuminated so the stereoscopic objective lens focuses the stereo-pair of images side-by-side on the video camera's pick-up, tube. The resulting electronic signal can be enhanced, digitized, colorized, quantified, its polarity reverse., and its gray scale expanJed non-linearally. The signal can be transmitted over distances and can be stored on video. tape for later playback. The electronic signal is converted to a stereo-pair of visual images on the video monitor's cathode-ray-tube. A stereo-hood is used to fuse the two images for three-dimensional viewing. The conventional optical microscope has definite limitations, many of which can be eliminated by converting the optical image to an electronic signal in the video microscope. The principal aHvantages of the Stereoscopic Video Microscope compared to the conventional optical microscope are: great ease of viewing; group viewing; ability to easily recohd; and, the capability of processing the electronic signal for video. enhancement. The applications cover nearly all fields of microscopy. These include: microelectronics assembly, inspection, and research; biological, metallurgical, and che.illical research; and other industrial and medical uses. The Stereo-scopic Video Microscope is particularly useful for instructional and recordkeeping purposes. The video microscope can be monoscopic or three dimensional.

  6. A Study of the Nature of Students' Models of Microscopic Processes in the Context of Modern Physics Experiments.

    ERIC Educational Resources Information Center

    Thacker, Beth Ann

    2003-01-01

    Interviews university students in modern physics about their understanding of three fundamental experiments. Explores their development of models of microscopic processes. Uses interactive demonstrations to probe student understanding of modern physics experiments in two high school physics classes. Analyzes the nature of students' models and the…

  7. Electromagnetic model for near-field microwave microscope with atomic resolution: Determination of tunnel junction impedance

    SciTech Connect

    Reznik, Alexander N.

    2014-08-25

    An electrodynamic model is proposed for the tunneling microwave microscope with subnanometer space resolution as developed by Lee et al. [Appl. Phys. Lett. 97, 183111 (2010)]. Tip-sample impedance Z{sub a} was introduced and studied in the tunneling and non-tunneling regimes. At tunneling breakdown, the microwave current between probe and sample flows along two parallel channels characterized by impedances Z{sub p} and Z{sub t} that add up to form overall impedance Z{sub a}. Quantity Z{sub p} is the capacitive impedance determined by the near field of the probe and Z{sub t} is the impedance of the tunnel junction. By taking into account the distance dependences of effective tip radius r{sub 0}(z) and tunnel resistance R{sub t}(z) = Re[Z{sub t}(z)], we were able to explain the experimentally observed dependences of resonance frequency f{sub r}(z) and quality factor Q{sub L}(z) of the microscope. The obtained microwave resistance R{sub t}(z) and direct current tunnel resistance R{sub t}{sup dc}(z) exhibit qualitatively similar behavior, although being largely different in both magnitude and the characteristic scale of height dependence. Interpretation of the microwave images of the atomic structure of test samples proved possible by taking into account the inductive component of tunnel impedance ImZ{sub t} = ωL{sub t}. Relation ωL{sub t}/R{sub t} ≈ 0.235 was obtained.

  8. Dielectric relaxation of cytochrome c oxidase: Comparison of the microscopic and continuum models.

    PubMed

    Leontyev, I V; Stuchebrukhov, A A

    2009-02-28

    We have studied a charge-insertion process that models the deprotonation of a histidine side chain in the active site of cytochrome c oxidase (CcO) using both the continuum electrostatic calculations and the microscopic simulations. The group of interest is a ligand to Cu(B) center of CcO, which has been previously suggested to play the role of the proton pumping element in the enzyme; the group is located near a large internal water cavity in the protein. Using the nonpolarizable Amber-99 force field in molecular dynamics (MD) simulations, we have calculated the nuclear part of the reaction-field energy of charging of the His group and combined it with the electronic part, which we estimated in terms of the electronic continuum (EC) model, to obtain the total reaction-field energy of charging. The total free energy obtained in this MDEC approach was then compared with that calculated using pure continuum electrostatic model with variable dielectric parameters. The dielectric constant for the "dry" protein and that of the internal water cavity of CcO were determined as those parameters that provide best agreement between the continuum and microscopic MDEC model. The nuclear (MD) polarization alone (without electronic part) of a dry protein was found to correspond to an unphysically low dielectric constant of only about 1.3, whereas the inclusion of electronic polarizability increases the protein dielectric constant to 2.6-2.8. A detailed analysis is presented as to how the protein structure should be selected for the continuum calculations, as well as which probe and atomic radii should be used for cavity definition. The dielectric constant of the internal water cavity was found to be 80 or even higher using "standard" parameters of water probe radius, 1.4 A, and protein atomic radii from the MD force field for cavity description; such high values are ascribed to the fact that the standard procedure produces unphysically small cavities. Using x-ray data for

  9. Dielectric relaxation of cytochrome c oxidase: Comparison of the microscopic and continuum models

    NASA Astrophysics Data System (ADS)

    Leontyev, I. V.; Stuchebrukhov, A. A.

    2009-02-01

    We have studied a charge-insertion process that models the deprotonation of a histidine side chain in the active site of cytochrome c oxidase (CcO) using both the continuum electrostatic calculations and the microscopic simulations. The group of interest is a ligand to CuB center of CcO, which has been previously suggested to play the role of the proton pumping element in the enzyme; the group is located near a large internal water cavity in the protein. Using the nonpolarizable Amber-99 force field in molecular dynamics (MD) simulations, we have calculated the nuclear part of the reaction-field energy of charging of the His group and combined it with the electronic part, which we estimated in terms of the electronic continuum (EC) model, to obtain the total reaction-field energy of charging. The total free energy obtained in this MDEC approach was then compared with that calculated using pure continuum electrostatic model with variable dielectric parameters. The dielectric constant for the "dry" protein and that of the internal water cavity of CcO were determined as those parameters that provide best agreement between the continuum and microscopic MDEC model. The nuclear (MD) polarization alone (without electronic part) of a dry protein was found to correspond to an unphysically low dielectric constant of only about 1.3, whereas the inclusion of electronic polarizability increases the protein dielectric constant to 2.6-2.8. A detailed analysis is presented as to how the protein structure should be selected for the continuum calculations, as well as which probe and atomic radii should be used for cavity definition. The dielectric constant of the internal water cavity was found to be 80 or even higher using "standard" parameters of water probe radius, 1.4Å, and protein atomic radii from the MD force field for cavity description; such high values are ascribed to the fact that the standard procedure produces unphysically small cavities. Using x-ray data for internal

  10. Monte-Carlo modelling of nano-material photocatalysis: bridging photocatalytic activity and microscopic charge kinetics.

    PubMed

    Liu, Baoshun

    2016-04-20

    In photocatalysis, it is known that light intensity, organic concentration, and temperature affect the photocatalytic activity by changing the microscopic kinetics of holes and electrons. However, how the microscopic kinetics of holes and electrons relates to the photocatalytic activity was not well known. In the present research, we developed a Monte-Carlo random walking model that involved all of the charge kinetics, including the photo-generation, the recombination, the transport, and the interfacial transfer of holes and electrons, to simulate the overall photocatalytic reaction, which we called a "computer experiment" of photocatalysis. By using this model, we simulated the effect of light intensity, temperature, and organic surface coverage on the photocatalytic activity and the density of the free electrons that accumulate in the simulated system. It was seen that the increase of light intensity increases the electron density and its mobility, which increases the probability for a hole/electron to find an electron/hole for recombination, and consequently led to an apparent kinetics that the quantum yield (QY) decreases with the increase of light intensity. It was also seen that the increase of organic surface coverage could increase the rate of hole interfacial transfer and result in the decrease of the probability for an electron to recombine with a hole. Moreover, the increase of organic coverage on the nano-material surface can also increase the accumulation of electrons, which enhances the mobility for electrons to undergo interfacial transfer, and finally leads to the increase of photocatalytic activity. The simulation showed that the temperature had a more complicated effect, as it can simultaneously change the activation of electrons, the interfacial transfer of holes, and the interfacial transfer of electrons. It was shown that the interfacial transfer of holes might play a main role at low temperature, with the temperature-dependence of QY

  11. An analytic model for accurate spring constant calibration of rectangular atomic force microscope cantilevers

    PubMed Central

    Li, Rui; Ye, Hongfei; Zhang, Weisheng; Ma, Guojun; Su, Yewang

    2015-01-01

    Spring constant calibration of the atomic force microscope (AFM) cantilever is of fundamental importance for quantifying the force between the AFM cantilever tip and the sample. The calibration within the framework of thin plate theory undoubtedly has a higher accuracy and broader scope than that within the well-established beam theory. However, thin plate theory-based accurate analytic determination of the constant has been perceived as an extremely difficult issue. In this paper, we implement the thin plate theory-based analytic modeling for the static behavior of rectangular AFM cantilevers, which reveals that the three-dimensional effect and Poisson effect play important roles in accurate determination of the spring constants. A quantitative scaling law is found that the normalized spring constant depends only on the Poisson’s ratio, normalized dimension and normalized load coordinate. Both the literature and our refined finite element model validate the present results. The developed model is expected to serve as the benchmark for accurate calibration of rectangular AFM cantilevers. PMID:26510769

  12. Numerical characterization of non-Abelian Moore-Read state in the microscopic lattice boson model

    NASA Astrophysics Data System (ADS)

    Zhu, Wei; Gong, Shoushu; Haldane, F. D. M.; Sheng, D. N.

    2015-03-01

    Identifying the interacting systems that host the non-Abelian (NA) topological phases have attracted intense attention in physics. Theoretically, it is possible to realize the NA Moore-Read (MR) state in bosonic system or double-layer system by coupling two Abelian fractional quantum Hall (FQH) states together. Here, based on the density matrix renormalization group and exact diagonalization calculations, we study two such examples in the microscopic lattice models and investigate their NA nature. In the first example, we provide a thorough characterization of the universal properties of MR state on Haldane honeycomb lattice model, including both the edge spectrum and the bulk anyonic quasiparticle statistics. By inspecting the entanglement spectral response to the U (1) flux, it is found that two of Abelian ground states can be adiabatically connected through a charge unit quasiparticle pumping from one edge to the other. In the second example, we study a double-layer bosonic FQH system built from the π-flux lattice model. Some evidences of NA nature has been identified, including the groundstate degeneracy and finite drag Hall conductance. The numerical methods we developed here provides a useful and practical way for detecting the full information of NA topological order. This research is supported by the U.S. Department of Energy, Office of Basic Energy Sciences under Grant No. DE-FG02-06ER46305.

  13. A Microscopic Model for the Strongly Coupled Electron-Ion System in VO2

    NASA Astrophysics Data System (ADS)

    Lovorn, Timothy; Sarker, Sanjoy

    The metal-insulator transition (MIT) in vanadium dioxide (VO2) near 340 K is accompanied by a structural transition, suggesting strong coupling between electronic and lattice degrees of freedom. To help elucidate this relationship, we construct and analyze a microscopic model in which electrons, described by a tight-binding Hamiltonian, are dynamically coupled to Ising-like ionic degrees of freedom. A mean-field decoupling leads to an interacting two-component (pseudo) spin-1 Ising model describing the ions. An analysis of the minimal ionic model reproduces the observed M1 and M2 dimerized phases and rutile metal phase, occurring in the observed order with increasing temperature. All three transitions are first order, as observed. We further find that both dimerization and correlations play crucial roles in describing the insulating M1 phase. We discuss why dynamical coupling of electrons and ions is key to obtain a full understanding of the phenomenology of VO2, particularly in the context of the phase coexistence observed near the MIT. This research was supported by the National Science Foundation (DMR-1508680).

  14. An analytic model for accurate spring constant calibration of rectangular atomic force microscope cantilevers.

    PubMed

    Li, Rui; Ye, Hongfei; Zhang, Weisheng; Ma, Guojun; Su, Yewang

    2015-01-01

    Spring constant calibration of the atomic force microscope (AFM) cantilever is of fundamental importance for quantifying the force between the AFM cantilever tip and the sample. The calibration within the framework of thin plate theory undoubtedly has a higher accuracy and broader scope than that within the well-established beam theory. However, thin plate theory-based accurate analytic determination of the constant has been perceived as an extremely difficult issue. In this paper, we implement the thin plate theory-based analytic modeling for the static behavior of rectangular AFM cantilevers, which reveals that the three-dimensional effect and Poisson effect play important roles in accurate determination of the spring constants. A quantitative scaling law is found that the normalized spring constant depends only on the Poisson's ratio, normalized dimension and normalized load coordinate. Both the literature and our refined finite element model validate the present results. The developed model is expected to serve as the benchmark for accurate calibration of rectangular AFM cantilevers. PMID:26510769

  15. An analytic model for accurate spring constant calibration of rectangular atomic force microscope cantilevers

    NASA Astrophysics Data System (ADS)

    Li, Rui; Ye, Hongfei; Zhang, Weisheng; Ma, Guojun; Su, Yewang

    2015-10-01

    Spring constant calibration of the atomic force microscope (AFM) cantilever is of fundamental importance for quantifying the force between the AFM cantilever tip and the sample. The calibration within the framework of thin plate theory undoubtedly has a higher accuracy and broader scope than that within the well-established beam theory. However, thin plate theory-based accurate analytic determination of the constant has been perceived as an extremely difficult issue. In this paper, we implement the thin plate theory-based analytic modeling for the static behavior of rectangular AFM cantilevers, which reveals that the three-dimensional effect and Poisson effect play important roles in accurate determination of the spring constants. A quantitative scaling law is found that the normalized spring constant depends only on the Poisson’s ratio, normalized dimension and normalized load coordinate. Both the literature and our refined finite element model validate the present results. The developed model is expected to serve as the benchmark for accurate calibration of rectangular AFM cantilevers.

  16. Microscopic modeling of País grape seed extract absorption in the small intestine.

    PubMed

    Morales, Cristian; Roeckel, Marlene; Fernández, Katherina

    2014-02-01

    The concentration profiles and the absorbed fraction (F) of the País grape seed extract in the human small intestine were obtained using a microscopic model simulation that accounts for the extracts' dissolution and absorption. To apply this model, the physical and chemical parameters of the grape seed extract solubility (C s), density (ρ), global mass transfer coefficient between the intestinal and blood content (k) (effective permeability), and diffusion coefficient (D) were experimentally evaluated. The diffusion coefficient (D = 3.45 × 10(-6) ± 5 × 10(-8) cm(2)/s) was approximately on the same order of magnitude as the coefficients of the relevant constituents. These results were chemically validated to discover that only the compounds with low molecular weights diffused across the membrane (mainly the (+)-catechin and (-)-epicatechin compounds). The model demonstrated that for the País grape seed extract, the dissolution process would proceed at a faster rate than the convective process. In addition, the absorbed fraction was elevated (F = 85.3%). The global mass transfer coefficient (k = 1.53 × 10(-4) ± 5 × 10(-6) cm/s) was a critical parameter in the absorption process, and minor changes drastically modified the prediction of the extract absorption. The simulation and experimental results show that the grape seed extract possesses the qualities of a potential phytodrug. PMID:24158737

  17. Tip-enhanced near-field optical microscope with side-on and ATR-mode sample excitation for super-resolution Raman imaging of surfaces

    NASA Astrophysics Data System (ADS)

    Heilman, A. L.; Gordon, M. J.

    2016-06-01

    A tip-enhanced near-field optical microscope with side-on and attenuated total reflectance (ATR) excitation and collection is described and used to demonstrate sub-diffraction-limited (super-resolution) optical and chemical characterization of surfaces. ATR illumination is combined with an Au optical antenna tip to show that (i) the tip can quantitatively transduce the optical near-field (evanescent waves) above the surface by scattering photons into the far-field, (ii) the ATR geometry enables excitation and characterization of surface plasmon polaritons (SPPs), whose associated optical fields are shown to enhance Raman scattering from a thin layer of copper phthalocyanine (CuPc), and (iii) SPPs can be used to plasmonically excite the tip for super-resolution chemical imaging of patterned CuPc via tip-enhanced Raman spectroscopy (TERS). ATR-illumination TERS is also quantitatively compared with the more conventional side-on illumination scheme. In both cases, spatial resolution was better than 40 nm and tip on/tip off Raman enhancement factors were >6500. Furthermore, ATR illumination was shown to provide similar Raman signal levels at lower "effective" pump powers due to additional optical energy delivered by SPPs to the active region in the tip-surface gap.

  18. 21 CFR 884.6190 - Assisted reproductive microscopes and microscope accessories.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... HUMAN SERVICES (CONTINUED) MEDICAL DEVICES OBSTETRICAL AND GYNECOLOGICAL DEVICES Assisted Reproduction.... Assisted reproduction microscopes and microscope accessories (excluding microscope stage warmers, which are classified under assisted reproduction accessories) are optical instruments used to enlarge images of...

  19. 21 CFR 884.6190 - Assisted reproductive microscopes and microscope accessories.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... HUMAN SERVICES (CONTINUED) MEDICAL DEVICES OBSTETRICAL AND GYNECOLOGICAL DEVICES Assisted Reproduction.... Assisted reproduction microscopes and microscope accessories (excluding microscope stage warmers, which are classified under assisted reproduction accessories) are optical instruments used to enlarge images of...

  20. 21 CFR 884.6190 - Assisted reproductive microscopes and microscope accessories.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... HUMAN SERVICES (CONTINUED) MEDICAL DEVICES OBSTETRICAL AND GYNECOLOGICAL DEVICES Assisted Reproduction.... Assisted reproduction microscopes and microscope accessories (excluding microscope stage warmers, which are classified under assisted reproduction accessories) are optical instruments used to enlarge images of...

  1. 21 CFR 884.6190 - Assisted reproductive microscopes and microscope accessories.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... HUMAN SERVICES (CONTINUED) MEDICAL DEVICES OBSTETRICAL AND GYNECOLOGICAL DEVICES Assisted Reproduction.... Assisted reproduction microscopes and microscope accessories (excluding microscope stage warmers, which are classified under assisted reproduction accessories) are optical instruments used to enlarge images of...

  2. 21 CFR 884.6190 - Assisted reproductive microscopes and microscope accessories.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... HUMAN SERVICES (CONTINUED) MEDICAL DEVICES OBSTETRICAL AND GYNECOLOGICAL DEVICES Assisted Reproduction.... Assisted reproduction microscopes and microscope accessories (excluding microscope stage warmers, which are classified under assisted reproduction accessories) are optical instruments used to enlarge images of...

  3. Microscopic nuclear models for astrophysics: The Brussels BRUSLIB nuclear library and beyond

    NASA Astrophysics Data System (ADS)

    Arnould, M.; Goriely, S.

    2006-10-01

    Astrophysics is in need of a broad variety of nuclear data. This concerns static ground state properties, characteristics of excited nuclei, spontaneous decay properties, or interactions of nuclei with (mainly) nucleons, α-particles or photons. A strong theoretical activity complementing laboratory efforts is also mandatory. A large variety of highly ‘exotic’ laboratory-unreachable nuclei are indeed involved in the astrophysics modelling. Even when laboratory-studied nuclei are considered, theory has very often to be called for. Mastering the huge volume of nuclear information and making it available in an accurate and usable form for incorporation into astrophysics models is clearly of pivotal importance. The recognition of this necessity has been the driving motivation for the construction of the Brussels library (BRUSLIB) of computed data of astrophysics relevance. It provides an extended information in tabular form on masses, nuclear level densities and partition functions, fission barriers, and thermonuclear reaction rates. In addition of the unprecedented broadness of its scope, BRUSLIB has the unique and most important feature of relying to the largest possible extent on global and coherent microscopic nuclear models. The models of this sort that we have developed to predict the basic properties of the nuclei and of their interactions are briefly reviewed. The content of the BRUSLIB library that relies on these models is described, as well as a user-friendly nuclear network generator (NETGEN) complementing BRUSLIB. Finally, an application of BRUSLIB and NETGEN to the p-process nucleosynthesis during He detonation in sub-Chandrasekhar CO white dwarfs is proposed.

  4. Microscopic Model Calculations for the Magnetization Process of Layered Triangular-Lattice Quantum Antiferromagnets

    NASA Astrophysics Data System (ADS)

    Yamamoto, Daisuke; Marmorini, Giacomo; Danshita, Ippei

    2015-01-01

    Magnetization processes of spin-1 /2 layered triangular-lattice antiferromagnets (TLAFs) under a magnetic field H are studied by means of a numerical cluster mean-field method with a scaling scheme. We find that small antiferromagnetic couplings between the layers give rise to several types of extra quantum phase transitions among different high-field coplanar phases. Especially, a field-induced first-order transition is found to occur at H ≈0.7 Hs, where Hs is the saturation field, as another common quantum effect of ideal TLAFs in addition to the well-established one-third plateau. Our microscopic model calculation with appropriate parameters shows excellent agreement with experiments on Ba3CoSb2O9 [T. Susuki et al., Phys. Rev. Lett. 110, 267201 (2013)]. Given this fact, we suggest that the Co2 + -based compounds may allow for quantum simulations of intriguing properties of this simple frustrated model, such as quantum criticality and supersolid states.

  5. Microscopic deformation mechanisms in model thermoplastic elastomers by molecular dynamics simulation

    NASA Astrophysics Data System (ADS)

    Parker, Amanda; Rottler, Jörg

    Thermoplastic elastomers (TPEs) can be formed by exploiting the nanostructured morphology of triblock copolymers. Glassy end-blocks phase separate to form spherical regions which act as physical cross-links for the soft rubbery phase. Molecular dynamics simulations of TPEs allow us to relate the microscopic mechanisms active during plastic deformation to the macroscopic stress response. A coarse-grained bead-spring model of linear ABA triblock copolymers which forms the desired spherical morphology is used for pure stress and pure strain uniaxial deformations. The systems are first equilibrated using a soft pair potential. We observe increased strain hardening in triblocks when compared to homopolymers of the same chain length in accordance with experiments. We connect variations in the stress response for systems of different chain lengths to the non-affine deformation of chains and to the scale of phase separated regions. The stress response is also compared to rubbery elasticity models, taking into account the evolution of chain entanglements during deformation. We observe void formation at the interfaces of glassy regions or where these regions have broken up at large strain.

  6. Microscopic model of the Knight shift in anisotropic and correlated metals

    NASA Astrophysics Data System (ADS)

    Hall, Bianca E.; Klemm, Richard A.

    2016-01-01

    We present a microscopic model of nuclear magnetic resonance in metals. The spin-1/2 local nucleus and its surrounding orbital electrons interact with the arbitrary constant \\boldsymbol{B}{0} and perpendicular time-oscillatory magnetic inductions \\boldsymbol{B}{1}(t) and with each other via an anisotropic hyperfine interaction. An Anderson-like Hamiltonian describes the excitations of the relevant occupied local orbital electrons into the conduction bands, each band described by an anisotropic effective mass with corresponding Landau orbits and an anisotropic spin \\boldsymbol{g} tensor. Local orbital electron correlation effects are included using the mean-field decoupling procedure of Lacroix. The Knight resonance frequency and corresponding linewidth shifts are evaluated to leading orders in the hyperfine and Anderson excitation interactions. While respectively proportional to {{≤ft({{B}1}/{{B}0}\\right)}2} and a constant for weak {{B}0}\\gg {{B}1} , both highly anisotropic shifts depend strongly upon \\boldsymbol{B}{0} when a Landau level is near the Fermi energy. Electron correlations affect the anisotropy of the linewidth shift. The model is easily generalizable to arbitrary nuclear spin I.

  7. Microscopic model calculations for the magnetization process of layered triangular-lattice quantum antiferromagnets.

    PubMed

    Yamamoto, Daisuke; Marmorini, Giacomo; Danshita, Ippei

    2015-01-16

    Magnetization processes of spin-1/2 layered triangular-lattice antiferromagnets (TLAFs) under a magnetic field H are studied by means of a numerical cluster mean-field method with a scaling scheme. We find that small antiferromagnetic couplings between the layers give rise to several types of extra quantum phase transitions among different high-field coplanar phases. Especially, a field-induced first-order transition is found to occur at H≈0.7H_{s}, where H_{s} is the saturation field, as another common quantum effect of ideal TLAFs in addition to the well-established one-third plateau. Our microscopic model calculation with appropriate parameters shows excellent agreement with experiments on Ba_{3}CoSb_{2}O_{9} [T. Susuki et al., Phys. Rev. Lett. 110, 267201 (2013)]. Given this fact, we suggest that the Co^{2+}-based compounds may allow for quantum simulations of intriguing properties of this simple frustrated model, such as quantum criticality and supersolid states. PMID:25635561

  8. Fission properties of Po isotopes in different macroscopic-microscopic models

    NASA Astrophysics Data System (ADS)

    Bartel, J.; Pomorski, K.; Nerlo-Pomorska, B.; Schmitt, Ch

    2015-11-01

    Fission-barrier heights of nuclei in the Po isotopic chain are investigated in several macroscopic-microscopic models. Using the Yukawa-folded single-particle potential, the Lublin-Strasbourg drop (LSD) model, the Strutinsky shell-correction method to yield the shell corrections and the BCS theory for the pairing contributions, fission-barrier heights are calculated and found in quite good agreement with the experimental data. This turns out, however, to be only the case when the underlying macroscopic, liquid-drop (LD) type, theory is well chosen. Together with the LSD approach, different LD parametrizations proposed by Moretto et al are tested. Four deformation parameters describing respectively elongation, neck-formation, reflectional-asymmetric, and non-axiality of the nuclear shape thus defining the so called modified Funny Hills shape parametrization are used in the calculation. The present study clearly demonstrates that nuclear fission-barrier heights constitute a challenging and selective tool to discern between such different macroscopic approaches.

  9. Hyperspectral confocal microscope

    NASA Astrophysics Data System (ADS)

    Sinclair, Michael B.; Haaland, David M.; Timlin, Jerilyn A.; Jones, Howland D. T.

    2006-08-01

    We have developed a new, high performance, hyperspectral microscope for biological and other applications. For each voxel within a three-dimensional specimen, the microscope simultaneously records the emission spectrum from 500 nm to 800 nm, with better than 3 nm spectral resolution. The microscope features a fully confocal design to ensure high spatial resolution and high quality optical sectioning. Optical throughput and detection efficiency are maximized through the use of a custom prism spectrometer and a backside thinned electron multiplying charge coupled device (EMCCD) array. A custom readout mode and synchronization scheme enable 512-point spectra to be recorded at a rate of 8300 spectra per second. In addition, the EMCCD readout mode eliminates curvature and keystone artifacts that often plague spectral imaging systems. The architecture of the new microscope is described in detail, and hyperspectral images from several specimens are presented.

  10. Hyperspectral confocal microscope.

    PubMed

    Sinclair, Michael B; Haaland, David M; Timlin, Jerilyn A; Jones, Howland D T

    2006-08-20

    We have developed a new, high performance, hyperspectral microscope for biological and other applications. For each voxel within a three-dimensional specimen, the microscope simultaneously records the emission spectrum from 500 nm to 800 nm, with better than 3 nm spectral resolution. The microscope features a fully confocal design to ensure high spatial resolution and high quality optical sectioning. Optical throughput and detection efficiency are maximized through the use of a custom prism spectrometer and a backside thinned electron multiplying charge coupled device (EMCCD) array. A custom readout mode and synchronization scheme enable 512-point spectra to be recorded at a rate of 8300 spectra per second. In addition, the EMCCD readout mode eliminates curvature and keystone artifacts that often plague spectral imaging systems. The architecture of the new microscope is described in detail, and hyperspectral images from several specimens are presented. PMID:16892134

  11. Optical computing based on neuronal models

    NASA Astrophysics Data System (ADS)

    Farhat, Nabil H.

    1987-10-01

    Ever since the fit between what neural net models can offer (collective, iterative, nonlinear, robust, and fault-tolerant approach to information processing) and the inherent capabilities of optics (parallelism and massive interconnectivity) was first pointed out and the first optical associative memory demonstrated in 1985, work and interest in neuromorphic optical signal processing has been growing steadily. For example, work in optical associative memories is currently being conducted at several academic institutions (e.g., California Institute of Technology, University of Colorado, University of California-San Diego, Stanford University, University of Rochester, and the author's own institution the University of Pennsylvania) and at several industrial and governmental laboratories (e.g., Hughes Research Laboratories - Malibu, the Naval Research Laboratory, and the Jet Propulsion Laboratory). In these efforts, in addition to the vector matrix multiplication with thresholding and feedback scheme utilized in early implementations, an arsenal of sophisticated optical tools such as holographic storage, phase conjugate optics, and wavefront modulation and mixing are being drawn on to realize associative memory functions.

  12. Optical Modeling Of Segmented Mirror Telescopes

    NASA Technical Reports Server (NTRS)

    Manhart, Paul K.; Rodgers, John M.

    1991-01-01

    Report describes how to model optical-path-length errors caused by errors in fabrication and alignment of hexagonal segments of segmented mirror telescope. Study motivated by trend toward lightweight designs of astronomical reflectors composed of such segments, deployed or erected on ground or in space.

  13. Microscopic model analysis of {sup 11}Li+p elastic scattering at 62, 68.4, and 75 MeV/nucleon

    SciTech Connect

    Hassan, M. Y. M.; Farag, M. Y. H.; Esmael, E. H.; Maridi, H. M.

    2009-01-15

    {sup 11}Li+p elastic scattering data at three energies, 62, 68.4, and 75 MeV/nucleon, are analyzed with density-dependent M3Y and KH effective nucleon-nucleon (NN) interactions in the framework of the single folding model. The parameters of the density-dependent term are adjusted to fulfill saturation of nuclear matter. The optical potentials (OP's) and cross sections are calculated using four model densities of {sup 11}Li, G (one-parameter Gaussian), GG (Gaussian-Gaussian), GO (Gaussian- oscillator), and the COSMA (cluster orbital shell model approximation). Comparative studies are performed for real, imaginary, and spin-orbit potentials with the phenomenological and microscopic forms. The microscopic volume and surface imaginary potentials are constructed from both the renormalized folded potentials and their derivatives. The sensitivity of the differential cross section to the four densities is tested. It is found that the {sup 11}Li+p elastic scattering cross sections depend strongly upon the behavior of the corresponding potentials. The GG and GO densities obtained from analyzing the data, using Glauber multiple scattering theory at high energies, give good results at energies below 100 MeV/nucleon in the framework of the folding model. The OP's calculated in the microscopic form using few parameters give good agreement with the data. Thus, it is not necessary to introduce a large number of arbitrary fitting parameters as done in the phenomenological and semimicroscopic OP's. The KH effective interaction successfully describes {sup 11}Li+p elastic scattering as the popular M3Y interaction. The obtained results of the reaction cross section are in good agreement with previous calculations.

  14. Simulation and experimental results of optical and thermal modeling of gold nanoshells.

    PubMed

    Ghazanfari, Lida; Khosroshahi, Mohammad E

    2014-09-01

    This paper proposes a generalized method for optical and thermal modeling of synthesized magneto-optical nanoshells (MNSs) for biomedical applications. Superparamagnetic magnetite nanoparticles with diameter of 9.5 ± 1.4 nm are fabricated using co-precipitation method and subsequently covered by a thin layer of gold to obtain 15.8 ± 3.5 nm MNSs. In this paper, simulations and detailed analysis are carried out for different nanoshell geometry to achieve a maximum heat power. Structural, magnetic and optical properties of MNSs are assessed using vibrating sample magnetometer (VSM), X-ray diffraction (XRD), UV-VIS spectrophotometer, dynamic light scattering (DLS), and transmission electron microscope (TEM). Magnetic saturation of synthesized magnetite nanoparticles are reduced from 46.94 to 11.98 emu/g after coating with gold. The performance of the proposed optical-thermal modeling technique is verified by simulation and experimental results. PMID:25063109

  15. A rabbit model of fatal hypothyroidism mimicking "myxedema coma" established by microscopic total thyroidectomy.

    PubMed

    Ono, Yosuke; Fujita, Masanori; Ono, Sachiko; Ogata, Sho; Tachibana, Shoichi; Tanaka, Yuji

    2016-06-30

    Myxedema coma (MC) is a life-threatening endocrine crisis caused by severe hypothyroidism. However, validated diagnostic criteria and treatment guidelines for MC have not been established owing to its rarity. Therefore, a valid animal model is required to investigate the pathologic and therapeutic aspects of MC. The aim of the present study was to establish an animal model of MC induced by total thyroidectomy. We utilized 14 male New Zealand White rabbits anesthetized via intramuscular ketamine and xylazine administration. A total of 7 rabbits were completely thyroidectomized under a surgical microscope (thyroidectomized group) and the remainder underwent sham operations (control group). The animals in both groups were monitored without thyroid hormone replacement for 15 weeks. Pulse rate, blood pressure, body temperature, and electrocardiograms (ECG) were recorded and blood samples were taken from the jugular vein immediately prior to the thyroidectomy and 2 and 4 weeks after surgery. The thyroidectomized rabbits showed a marked reduction of serum thyroxine levels at 4 weeks after the surgical procedure vs. controls (0.50±0.10 vs. 3.32±0.68 μg/dL, p<0.001). Additionally, thyroidectomized rabbits exhibited several signs of hypothyroidism such as hypothermia, systolic hypotension, bradycardia, and low voltage on ECGs, compared with controls. Of the 7 rabbits with severe hypothyroidism, 6 died from 4 to 14 weeks after the thyroidectomy possibly owing to heart failure, because histopathologic examinations revealed a myxedema heart. In summary, we have established a rabbit model of fatal hypothyroidism mimicking MC, which may facilitate pathophysiological and molecular investigations of MC and evaluations of new therapeutic interventions. PMID:26924647

  16. Microscopic model of the Knight shift in anisotropic and correlated metals

    NASA Astrophysics Data System (ADS)

    Klemm, Richard; Hall, Bianca

    We present a microscopic model of nuclear magnetic resonance in metals. The spins of the spin-1/2 local nucleus and its surrounding orbital electrons interact with the arbitrary constant B0 and perpendicular time-oscillatory magnetic inductions B1 (t) and with each other via an anisotropic hyperfine interaction. An Anderson-like Hamiltonian describes the excitations of the relevant occupied local orbital electrons into the conduction bands, each band described by an anisotropic effective mass with corresponding Landau orbits and an anisotropic spin g tensor. Local orbital electron correlation effects are included using the mean-field decoupling procedure of Lacroix. The Knight resonance frequency and corresponding linewidth shifts are evaluated to leading orders in the hyperfine and Anderson excitation interactions. While respectively proportional to (B1 /B0) 2 and a constant for weak B0 > >B1 , both highly anisotropic shifts depend strongly upon B0 when a Landau level is near the Fermi energy. Electron correlations affect the anisotropy of the linewidth shift. The authors acknowledge support from an anonymous donor.

  17. Competitive heterogeneous nucleation onto a microscopic impurity in a Potts model

    NASA Astrophysics Data System (ADS)

    Asuquo, Cletus C.; McArthur, Danielle; Bowles, Richard K.

    2016-08-01

    Many metastable systems can nucleate to multiple competing stable or intermediate metastable states. In this work, a Potts model, subject to external fields, is used to study the competitive nucleation of two phases attempting to grow on a microscopic impurity. Monte Carlo simulations are used to calculate the free energy surfaces for the system under different conditions, where the relative stability of the phases is adjusted by changing the interaction parameters, and the nucleation rates obtained using multicomponent transition state theory (TST) are compared with the rates measured using the survival probability method. We find that the two methods predict similar nucleation rates when the free energy barrier used in the transition state theory is defined as the work required to form a critical embryo from the metastable phase. An analysis of the free energy surfaces also reveals that the competition between the nucleating phases leads to an effective drying of the impurity which slows down the nucleation rate compared to the single phase case.

  18. Global properties of even-even superheavy nuclei in macroscopic-microscopic models

    SciTech Connect

    Baran, Andrzej; Lojewski, Zdzislaw; Sieja, Kamila; Kowal, Michal

    2005-10-01

    A systematic study of global properties of superheavy nuclei in the framework of macroscopic-microscopic method is performed. Equilibrium deformations, masses, quadrupole moments, radii, shell energies, fission barriers and half-lives are calculated using the following macroscopic models: Myers-Swiatecki liquid drop, droplet, Yukawa-plus-exponential, and Lublin-Strasbourg drop. Shell and pairing energies are calculated in Woods-Saxon potential with a universal set of parameters. The analysis covers a wide range of even-even superheavy nuclei from Z=100 to 122. Magic and semimagic numbers occurring in this region are indicated and their influence on the observables is discussed. The strongest shell effects appear at proton number Z=114 and at neutron number N=184. Deformed shell closures are found at N=152 and 162. Spontaneous fission half-lives are calculated in a dynamical approach where the full minimization of the action integral in a three-dimensional deformation space of {beta} deformations is performed. The fission half-lives obtained this way are two orders of magnitude smaller than the ones resulting from static calculations. The agreement of theoretical results and experimental data is satisfying.

  19. β -decay rates of Cs-131121 in the microscopic interacting boson-fermion model

    NASA Astrophysics Data System (ADS)

    Mardones, E.; Barea, J.; Alonso, C. E.; Arias, J. M.

    2016-03-01

    β -decay rates of Cs-131121 have been calculated in the framework of the neutron-proton interacting boson-fermion model (IBFM-2). For odd-A nuclei, the decay operator can be written in a relatively simple form in terms of the one-nucleon transfer operator. Previous studies of β decay in IBFM-2 were based on a transfer operator obtained by using the number operator approximation (NOA). In this work a new form of the one-nucleon transfer operator, derived microscopically without the NOA approximation, is used. The results from both approaches are compared and show that the deviation from experimental data is reduced without using the NOA approximation. Indications about the renormalization of the Fermi and Gamow-Teller matrix elements are discussed. This is a further step toward a more complete description of low-lying states in medium and heavy nuclei which is necessary to compute reliable matrix elements in studies of current active interest such as double-β decay or neutrino absorption experiments.

  20. Modeling of Electronic Transport in Scanning Tunneling Microscope Tip-Carbon Nanotube Systems

    NASA Technical Reports Server (NTRS)

    Yamada, Toshishige; Kwak, Dochan (Technical Monitor)

    2000-01-01

    A model is proposed for two observed current-voltage (I-V) patterns in a recent experiment with a scanning tunneling microscope tip and a carbon nanotube. We claim that there are two mechanical contact modes for a tip (metal) -nanotube (semiconductor) junction (1) with or (2) without a tiny vacuum gap (0.1 - 0.2 nm). With the tip grounded, the tunneling case in (1) would produce large dI/dV with V > 0, small dI/dV with V < 0, and I = 0 near V = 0 for an either n- or p-nanotube; the Schottky mechanism in (2) would result in I does not equal 0 only with V < 0 for an n-nanotube, and the bias polarities would be reversed for a p-nanotube. The two observed I-V patterns are thus entirely explained by a tip-nanotube contact of the two types, where the nanotube must be n-type.

  1. Analytical modeling for microwave and optical metasurfaces

    NASA Astrophysics Data System (ADS)

    Monti, Alessio; Soric, Jason; Alù, Andrea; Toscano, Alessandro; Bilotti, Filiberto

    2016-06-01

    A metasurface is an artificial structure composed by an ultrathin surface textured at a subwavelength scale. In the last years, metasurfaces have been revealed to be particularly useful in the design of electromagnetic scattering cancellation devices operating at microwave and optical frequencies. In this contribution we summarize our results about the analytical modelling of microwave and optical metasurfaces composed, respectively, by patterned metallic surfaces and arrays of plasmonic nanoparticles. The analytical results are compared with the numerical ones obtained with a proper set of full-wave simulations showing an excellent agreement.

  2. A Customized Light Sheet Microscope to Measure Spatio-Temporal Protein Dynamics in Small Model Organisms

    PubMed Central

    Rieckher, Matthias; Kourmoulakis, Georgios; Tavernarakis, Nektarios; Ripoll, Jorge; Zacharakis, Giannis

    2015-01-01

    We describe a customizable and cost-effective light sheet microscopy (LSM) platform for rapid three-dimensional imaging of protein dynamics in small model organisms. The system is designed for high acquisition speeds and enables extended time-lapse in vivo experiments when using fluorescently labeled specimens. We demonstrate the capability of the setup to monitor gene expression and protein localization during ageing and upon starvation stress in longitudinal studies in individual or small groups of adult Caenorhabditis elegans nematodes. The system is equipped to readily perform fluorescence recovery after photobleaching (FRAP), which allows monitoring protein recovery and distribution under low photobleaching conditions. Our imaging platform is designed to easily switch between light sheet microscopy and optical projection tomography (OPT) modalities. The setup permits monitoring of spatio-temporal expression and localization of ageing biomarkers of subcellular size and can be conveniently adapted to image a wide range of small model organisms and tissue samples. PMID:26000610

  3. Development of a shear-force scanning near-field cathodoluminescence microscope for characterization of nanostructures' optical properties.

    PubMed

    Bercu, N B; Troyon, M; Molinari, M

    2016-09-01

    An original scanning near-field cathodoluminescence microscope for nanostructure characterization has been developed and successfully tested. By using a bimorph piezoelectric stack both as actuator and detector, the developed setup constitutes a real improvement compared to previously reported SEM-based solutions. The technique combines a scanning probe and a scanning electron microscope in order to simultaneously offer near-field cathodoluminescence and topographic images of the sample. Share-force topography and cathodoluminescence measurements on GaN, SiC and ZnO nanostructures using the developed setup are presented showing a nanometric resolution in both topography and cathodoluminescence images with increased sensitivity compared to classical luminescence techniques. PMID:27125561

  4. Optical models for silicon solar cells

    SciTech Connect

    Marshall, T.; Sopori, B.

    1995-08-01

    Light trapping is an important design feature for high-efficiency silicon solar cells. Because light trapping can considerably enhance optical absorption, a thinner substrate can be used which, in turn, can lower the bulk carrier recombination and concommitantly increase open-circuit voltage, and fill factor of the cell. The basic concepts of light trapping are similar to that of excitation of an optical waveguide, where a prism or a grating structure increases the phase velocity of the incoming optical wave such that waves propagated within the waveguide are totally reflected at the interfaces. Unfortunately, these concepts break down because the entire solar cell is covered with such a structure, making it necessary to develop new analytical approaches to deal with incomplete light trapping in solar cells. This paper describes two models that analyze light trapping in thick and thin solar cells.

  5. Individual-based modelling of bacterial cultures to study the microscopic causes of the lag phase.

    PubMed

    Prats, Clara; López, Daniel; Giró, Antoni; Ferrer, Jordi; Valls, Joaquim

    2006-08-21

    The lag phase has been widely studied for years in an effort to contribute to the improvement of food safety. Many analytical models have been built and tested by several authors. The use of Individual-based Modelling (IbM) allows us to probe deeper into the behaviour of individual cells; it is a bridge between theories and experiments when needed. INDividual DIScrete SIMulation (INDISIM) has been developed and coded by our group as an IbM simulator and used to study bacterial growth, including the microscopic causes of the lag phase. First of all, the evolution of cellular masses, specifically the mean mass and biomass distribution, is shown to be a determining factor in the beginning of the exponential phase. Secondly, whenever there is a need for an enzyme synthesis, its rate has a direct effect on the lag duration. The variability of the lag phase with different factors is also studied. The known decrease of the lag phase with an increase in the temperature is also observed in the simulations. An initial study of the relationship between individual and collective lag phases is presented, as a complement to the studies already published. One important result is the variability of the individual lag times and generation times. It has also been found that the mean of the individual lags is greater than the population lag. This is the first in a series of studies of the lag phase that we are carrying out. Therefore, the present work addresses a generic system by making a simple set of assumptions. PMID:16524598

  6. Instruction manual, Optical Effects Module, Model OEM

    NASA Technical Reports Server (NTRS)

    1975-01-01

    The Optical Effects Module Model OEM-1, a laboratory prototype instrument designed for the automated measurement of radiation transmission and scattering through optical samples, is described. The system comprises two main components: the Optical Effects Module Enclosure (OEME) and the Optical Effects Module Electronic Controller and Processor (OEMCP). The OEM is designed for operation in the near UV at approximately 2540A, corresponding to the most intense spectral line activated by the mercury discharge lamp used for illumination. The radiation from this source is detected in transmission and reflection through a number of selectable samples. The basic objective of this operation is to monitor in real time the accretion of possible contamination on the surface of these samples. The optical samples are exposed outside of the OEME proper to define exposure conditions and to separate exposure and measurement environments. Changes in the transmissivity of the sample are attributable to surface contamination or to bulk effects due to radiation. Surface contamination will increase radiation scattering due to Rayleigh-Gans effect or to other phenomena, depending on the characteristics size of the particulate contaminants. Thus, also scattering from the samples becomes a part of the measurement program.

  7. Provenance study through analysis of microstructural characteristics using an optical microscope and scanning electron microscopy for Goryeo celadon excavated from the seabed.

    PubMed

    Min-su, Han

    2013-08-01

    This paper aims at identifying the provenance of Goryeo celadons by understanding its microstructural characteristics, such as particles, blisters, forms and amount of pores, and the presence of crystal formation, bodies, and glazes and its boundary, using an optical microscope and scanning electron microscopy (SEM). The analysis of the reproduced samples shows that the glazed layer of the sherd fired at higher temperatures has lower viscosity and therefore it encourages the blisters to be combined together and the layer to become more transparent. In addition, the result showed that the vitrification and melting process of clay minerals such as feldspars and quartzs on the bodies was accelerated for those samples. To factor such characteristics of the microstructure and apply it to the sherds, the samples could be divided into six categories based on status, such as small particles with many small pores or mainly large and small circular pores in the bodies, only a limited number of varied sized blisters in the glazes, and a few blisters and needle-shaped crystals on the boundary surface. In conclusion, the analysis of the microstructural characteristics using an optical microscope and SEM have proven to be useful as a categorizing reference factor in a provenance study on Goryeo celadons. PMID:23920196

  8. Environmental, scanning electron and optical microscope image analysis software for determining volume and occupied area of solid-state fermentation fungal cultures.

    PubMed

    Osma, Johann F; Toca-Herrera, José L; Rodríguez-Couto, Susana

    2011-01-01

    Here we propose a software for the estimation of the occupied area and volume of fungal cultures. This software was developed using a Matlab platform and allows analysis of high-definition images from optical, electronic or atomic force microscopes. In a first step, a single hypha grown on potato dextrose agar was monitored using optical microscopy to estimate the change in occupied area and volume. Weight measurements were carried out to compare them with the estimated volume, revealing a slight difference of less than 1.5%. Similarly, samples from two different solid-state fermentation cultures were analyzed using images from a scanning electron microscope (SEM) and an environmental SEM (ESEM). Occupied area and volume were calculated for both samples, and the results obtained were correlated with the dry weight of the cultures. The difference between the estimated volume ratio and the dry weight ratio of the two cultures showed a difference of 10%. Therefore, this software is a promising non-invasive technique to determine fungal biomass in solid-state cultures. PMID:21154435

  9. Microscopic colitis.

    PubMed

    Pardi, Darrell S

    2014-02-01

    Microscopic colitis is a frequent cause of chronic watery diarrhea, especially in older persons. Common associated symptoms include abdominal pain, arthralgias, and weight loss. The incidence of microscopic colitis had been increasing, although more recent studies have shown a stabilization of incidence rates. The diagnosis is based on characteristic histologic findings in a patient with diarrhea. Microscopic colitis can occur at any age, including in children, but it is primarily seen in the elderly. Several treatment options exist to treat the symptoms of microscopic colitis, although only budesonide has been well studied in randomized clinical trials. PMID:24267602

  10. Dense arrays of microscopic optical vortex generators from femtosecond direct laser writing of radial birefringence in glass

    NASA Astrophysics Data System (ADS)

    Brasselet, Etienne; Royon, Arnaud; Canioni, Lionel

    2012-04-01

    We report on the generation of permanent singular light mode converters at the microscale using femtosecond direct laser writing in photo-thermo-refractive glass. It relies on the irreversible light-induced radial birefringence in the bulk of the material. The ability of such birefringence pattern to convert the spin angular momentum of light into orbital optical angular momentum is exploited to demonstrate the production of large arrays of optical vortex generators with surface densities up to 104cm-2.

  11. RxGen General Optical Model Prescription Generator

    NASA Technical Reports Server (NTRS)

    Sigrist, Norbert

    2012-01-01

    RxGen is a prescription generator for JPL's in-house optical modeling software package called MACOS (Modeling and Analysis for Controlled Optical Systems), which is an expert optical analysis software package focusing on modeling optics on dynamic structures, deformable optics, and controlled optics. The objectives of RxGen are to simplify and automate MACOS prescription generations, reducing errors associated with creating such optical prescriptions, and improving user efficiency without requiring MACOS proficiency. RxGen uses MATLAB (a high-level language and interactive environment developed by MathWorks) as the development and deployment platform, but RxGen can easily be ported to another optical modeling/analysis platform. Running RxGen within the modeling environment has the huge benefit that variations in optical models can be made an integral part of the modeling state. For instance, optical prescription parameters determined as external functional dependencies, optical variations by controlling the in-/exclusion of optical components like sub-systems, and/or controlling the state of all components. Combining the mentioned capabilities and flexibilities with RxGen's optical abstraction layer completely eliminates the hindering aspects for requiring proficiency in writing/editing MACOS prescriptions, allowing users to focus on the modeling aspects of optical systems, i.e., increasing productivity and efficiency. RxGen provides significant enhancements to MACOS and delivers a framework for fast prototyping as well as for developing very complex controlled optical systems.

  12. A Thermo-Optic Propagation Modeling Capability.

    SciTech Connect

    Schrader, Karl; Akau, Ron

    2014-10-01

    A new theoretical basis is derived for tracing optical rays within a finite-element (FE) volume. The ray-trajectory equations are cast into the local element coordinate frame and the full finite-element interpolation is used to determine instantaneous index gradient for the ray-path integral equation. The FE methodology (FEM) is also used to interpolate local surface deformations and the surface normal vector for computing the refraction angle when launching rays into the volume, and again when rays exit the medium. The method is implemented in the Matlab(TM) environment and compared to closed- form gradient index models. A software architecture is also developed for implementing the algorithms in the Zemax(TM) commercial ray-trace application. A controlled thermal environment was constructed in the laboratory, and measured data was collected to validate the structural, thermal, and optical modeling methods.

  13. Optical Imaging and Radiometric Modeling and Simulation

    NASA Technical Reports Server (NTRS)

    Ha, Kong Q.; Fitzmaurice, Michael W.; Moiser, Gary E.; Howard, Joseph M.; Le, Chi M.

    2010-01-01

    OPTOOL software is a general-purpose optical systems analysis tool that was developed to offer a solution to problems associated with computational programs written for the James Webb Space Telescope optical system. It integrates existing routines into coherent processes, and provides a structure with reusable capabilities that allow additional processes to be quickly developed and integrated. It has an extensive graphical user interface, which makes the tool more intuitive and friendly. OPTOOL is implemented using MATLAB with a Fourier optics-based approach for point spread function (PSF) calculations. It features parametric and Monte Carlo simulation capabilities, and uses a direct integration calculation to permit high spatial sampling of the PSF. Exit pupil optical path difference (OPD) maps can be generated using combinations of Zernike polynomials or shaped power spectral densities. The graphical user interface allows rapid creation of arbitrary pupil geometries, and entry of all other modeling parameters to support basic imaging and radiometric analyses. OPTOOL provides the capability to generate wavefront-error (WFE) maps for arbitrary grid sizes. These maps are 2D arrays containing digital sampled versions of functions ranging from Zernike polynomials to combination of sinusoidal wave functions in 2D, to functions generated from a spatial frequency power spectral distribution (PSD). It also can generate optical transfer functions (OTFs), which are incorporated into the PSF calculation. The user can specify radiometrics for the target and sky background, and key performance parameters for the instrument s focal plane array (FPA). This radiometric and detector model setup is fairly extensive, and includes parameters such as zodiacal background, thermal emission noise, read noise, and dark current. The setup also includes target spectral energy distribution as a function of wavelength for polychromatic sources, detector pixel size, and the FPA s charge

  14. 3D modeling of optically challenging objects.

    PubMed

    Park, Johnny; Kak, Avinash

    2008-01-01

    We present a system for constructing 3D models of real-world objects with optically challenging surfaces. The system utilizes a new range imaging concept called multi-peak range imaging, which stores multiple candidates of range measurements for each point on the object surface. The multiple measurements include the erroneous range data caused by various surface properties that are not ideal for structured-light range sensing. False measurements generated by spurious reflections are eliminated by applying a series of constraint tests. The constraint tests based on local surface and local sensor visibility are applied first to individual range images. The constraint tests based on global consistency of coordinates and visibility are then applied to all range images acquired from different viewpoints. We show the effectiveness of our method by constructing 3D models of five different optically challenging objects. To evaluate the performance of the constraint tests and to examine the effects of the parameters used in the constraint tests, we acquired the ground truth data by painting those objects to suppress the surface-related properties that cause difficulties in range sensing. Experimental results indicate that our method significantly improves upon the traditional methods for constructing reliable 3D models of optically challenging objects. PMID:18192707

  15. Microscopic, electrical and optical studies on InGaN/GaN quantum wells based LED devices

    SciTech Connect

    Mutta, Geeta Rani; Venturi, Giulia; Castaldini, Antonio; Cavallini, Anna

    2014-02-21

    We report here on the micro structural, electronic and optical properties of a GaN-based InGaN/GaN MQW LED grown by the MOVPE method. The present study shows that the threading dislocations present in these LED structures are terminated as V pits at the surface and have an impact on the electrical and optical activity of these devices. It has been pointed that these dislocations were of edge, screw and mixed types. EBIC maps suggest that the electrically active defects are screw and mixed dislocations and behave as nonradiative recombinant centres.

  16. The Analog Atomic Force Microscope: Measuring, Modeling, and Graphing for Middle School

    ERIC Educational Resources Information Center

    Goss, Valerie; Brandt, Sharon; Lieberman, Marya

    2013-01-01

    using an analog atomic force microscope (A-AFM) made from a cardboard box and mailing tubes. Varying numbers of ping pong balls inside the tubes mimic atoms on a surface. Students use a dowel to make macroscale measurements similar to those of a nanoscale AFM tip as it…

  17. A Computer-Controlled Classroom Model of an Atomic Force Microscope

    ERIC Educational Resources Information Center

    Engstrom, Tyler A.; Johnson, Matthew M.; Eklund, Peter C.; Russin, Timothy J.

    2015-01-01

    The concept of "seeing by feeling" as a way to circumvent limitations on sight is universal on the macroscopic scale--reading Braille, feeling one's way around a dark room, etc. The development of the atomic force microscope (AFM) in 1986 extended this concept to imaging in the nanoscale. While there are classroom demonstrations that use…

  18. Microscopic Description of the Exotic Nuclei Reactions by Using Folding model Potentials

    SciTech Connect

    Ibraheem, Awad A.; Hassanain, M. A.; Mokhtar, S. R.; El-Azab Farid, M.; Zaki, M. A.; Mahmoud, Zakaria M. M.

    2011-10-27

    A microscopic folding approach based upon the effective M3Y nucleon-nucleon interaction and the nuclear matter densities of the interacting nuclei has been carried out to explain recently measured experimental data of the {sup 6}He+{sup 120}Sn elastic scattering reaction at four different laboratory energies near the Coulomb barrier. The corresponding reaction cross sections are also considered.

  19. Preclinical evaluation and intraoperative human retinal imaging with a high-resolution microscope-integrated spectral domain optical coherence tomography device

    PubMed Central

    Hahn, Paul; Migacz, Justin; O’Connell, Rachelle; Day, Shelley; Lee, Annie; Lin, Phoebe; Vann, Robin; Kuo, Anthony; Fekrat, Sharon; Mruthyunjaya, Prithvi; Postel, Eric A.; Izatt, Joseph A.; Toth, Cynthia A.

    2013-01-01

    Purpose We have recently developed a high-resolution microscope-integrated spectral domain optical coherence tomography (MIOCT) device designed to enable OCT acquisition simultaneous with surgical maneuvers. The purpose of this report is to describe translation of this device from preclinical testing into human intraoperative imaging. Methods Prior to human imaging, surgical conditions were fully simulated for extensive preclinical MIOCT evaluation in a custom model eye system. MIOCT images were then acquired in normal human volunteers and during vitreoretinal surgery in patients who consented to participate in a prospective Institutional Review Board-approved study. MIOCT images were obtained before and at pauses in surgical maneuvers and were compared based on pre-determined diagnostic criteria to images obtained with a high-resolution research handheld spectral domain OCT system (HHOCT, Bioptigen Inc., Research Triangle Park, NC) at the same time point. Cohorts of five consecutive patients were imaged. Successful endpoints were pre-defined, including ≥80% correlation in identification of pathology between MIOCT and HHOCT in ≥80% of patients. Results MIOCT was favorably evaluated by study surgeons and scrub nurses, all of whom responded that they would consider participating in human intraoperative imaging trials. The preclinical evaluation identified significant improvements that were made prior to MIOCT use during human surgery. The MIOCT transition into clinical human research was smooth. MIOCT imaging in normal human volunteers demonstrated high-resolution comparable to tabletop scanners. In the operating room, after an initial learning curve, surgeons successfully acquired human macular MIOCT images before and after surgical maneuvers. MIOCT imaging confirmed preoperative diagnoses, such as full-thickness macular hole and vitreomacular traction, and demonstrated post-surgical changes in retinal morphology. Two cohorts of five patients were imaged. In the

  20. A hybrid high-speed atomic force-optical microscope for visualizing single membrane proteins on eukaryotic cells

    NASA Astrophysics Data System (ADS)

    Colom, Adai; Casuso, Ignacio; Rico, Felix; Scheuring, Simon

    2013-07-01

    High-speed atomic force microscopy is a powerful tool for studying structure and dynamics of proteins. So far, however, high-speed atomic force microscopy was restricted to well-controlled molecular systems of purified proteins. Here we integrate an optical microscopy path into high-speed atomic force microscopy, allowing bright field and fluorescence microscopy, without loss of high-speed atomic force microscopy performance. This hybrid high-speed atomic force microscopy/optical microscopy setup allows positioning of the high-speed atomic force microscopy tip with high spatial precision on an optically identified zone of interest on cells. We present movies at 960 ms per frame displaying aquaporin-0 array and single molecule dynamics in the plasma membrane of intact eye lens cells. This hybrid setup allows high-speed atomic force microscopy imaging on cells about 1,000 times faster than conventional atomic force microscopy/optical microscopy setups, and allows first time visualization of unlabelled membrane proteins on a eukaryotic cell under physiological conditions. This development advances high-speed atomic force microscopy from molecular to cell biology to analyse cellular processes at the membrane such as signalling, infection, transport and diffusion.

  1. Studies of porphyrin-containing specimens using an optical spectrometer connected to a confocal scanning laser microscope.

    PubMed

    Trepte, O; Rokahr, I; Andersson-Engels, S; Carlsson, K

    1994-12-01

    A spectrometer has been developed for use with a confocal scanning laser microscope. With this unit, spectral information from a single point or a user-defined region within the microscope specimen can be recorded. A glass prism is used to disperse the spectral components of the recorded light over a linear CCD photodiode array with 256 elements. A regulated cooling unit keeps the detector at 277 K, thereby allowing integration times of up to 60 s. The spectral resolving power, lambda/delta lambda, ranges from 350 at lambda = 400 nm to 100 at lambda = 700 nm. Since the entrance aperture of the spectrometer has the same size as the detector pinhole used during normal confocal scanning, the three-dimensional spatial resolution is equivalent to that of normal confocal scanning. Light from the specimen is deflected to the spectrometer by a solenoid controlled mirror, allowing fast and easy switching between normal confocal scanning and spectrometer readings. With this equipment, studies of rodent liver specimens containing porphyrins have been made. The subcellular localization is of interest for the mechanisms of photodynamic therapy (PDT) of malignant tumours. Spectroscopic detection is necessary to distinguish the porphyrin signal from other fluorescent components in the specimen. Two different substances were administered to the tissue, Photofrin, a haematoporphyrin derivative (HPD) and delta-amino levulinic acid (ALA), a precursor to protoporphyrin IX and haem in the haem cycle. Both are substances under clinical trials for PDT of malignant tumours. Following administration of these compounds to the tissue, the potent photosensitizer and fluorescent compound Photofrin, or protoporphyrin IX, respectively, is accumulated.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:7869364

  2. Microscopic Polyangiitis

    MedlinePlus

    ... include purplish bumps and spots pictured below (palpable purpura). These areas range in size from several millimeters ... Syndrome (EGPA) Cryoglobulinemia Giant Cell Arteritis Henoch-Schönlein Purpura Microscopic Polyangiitis Polyarteritis Nodosa Rheumatoid Vasculitis Takayasu’s Arteritis ...

  3. Ultrafast supercontinuum fiber-laser based pump-probe scanning magneto-optical Kerr effect microscope for the investigation of electron spin dynamics in semiconductors at cryogenic temperatures with picosecond time and micrometer spatial resolution

    SciTech Connect

    Henn, T.; Kiessling, T. Ossau, W.; Molenkamp, L. W.; Biermann, K.; Santos, P. V.

    2013-12-15

    We describe a two-color pump-probe scanning magneto-optical Kerr effect microscope which we have developed to investigate electron spin phenomena in semiconductors at cryogenic temperatures with picosecond time and micrometer spatial resolution. The key innovation of our microscope is the usage of an ultrafast “white light” supercontinuum fiber-laser source which provides access to the whole visible and near-infrared spectral range. Our Kerr microscope allows for the independent selection of the excitation and detection energy while avoiding the necessity to synchronize the pulse trains of two separate picosecond laser systems. The ability to independently tune the pump and probe wavelength enables the investigation of the influence of excitation energy on the optically induced electron spin dynamics in semiconductors. We demonstrate picosecond real-space imaging of the diffusive expansion of optically excited electron spin packets in a (110) GaAs quantum well sample to illustrate the capabilities of the instrument.

  4. The microscopic (optical and SEM) examination of dental calculus deposits (DCD). Potential interest in forensic anthropology of a bio-archaeological method.

    PubMed

    Charlier, Philippe; Huynh-Charlier, Isabelle; Munoz, Olivia; Billard, Michel; Brun, Luc; de la Grandmaison, Geoffroy Lorin

    2010-07-01

    This article describes the potential interest in forensic anthropology of the microscopic analysis of dental calculus deposits (DCD), a calcified residue frequently found on the surface of teeth. Its sampling and analysis seem straightforward and relatively reproducible. Samples came from archaeological material (KHB-1 Ra's al-Khabbah and RH-5 Ra's al-Hamra, two Prehistoric graveyards located in the Sultanate of Oman, dated between the 5th and 4th millennium B.C.; Montenzio Vecchia, an Etruscan-Celtic necropolis from the north of Italy, dated between the 5th and 3rd century B.C.; body rests of Agnès Sorel, French royal mistress died in 1450 A.D.; skeleton of Pierre Hazard, French royal notary from the 15th century A.D.). Samples were studies by direct optical microscope (OM) or scanning electron microscopy (SEM). Many cytological, histological and elemental analyses were possible, producing precious data for the identification of these remains, the reconstitution of their alimentation and occupational habits, and propositions for manner of death. PMID:20444636

  5. Transmission electron microscope CCD camera

    DOEpatents

    Downing, Kenneth H.

    1999-01-01

    In order to improve the performance of a CCD camera on a high voltage electron microscope, an electron decelerator is inserted between the microscope column and the CCD. This arrangement optimizes the interaction of the electron beam with the scintillator of the CCD camera while retaining optimization of the microscope optics and of the interaction of the beam with the specimen. Changing the electron beam energy between the specimen and camera allows both to be optimized.

  6. Second harmonic generation in a KNbO3 nanorod and its detection by using a near-field scanning optical microscope

    NASA Astrophysics Data System (ADS)

    Park, D. J.; Kang, P. G.; Jung, J. H.; Lee, H. H.; Choi, S. B.

    2016-04-01

    We report on an observation of second harmonic generation in an individual KNbO3 nanorod by using a near-field scanning optical microscope. The second harmonic is successfully generated by irradiating with a femtosecond laser having center wavelengths of 1200, 1100, and 972 nm. Such a second harmonic yield shows a clear dependence on the incident laser polarization, where maximum yield is obtained when the incident laser polarization is parallel to the long axis of an individual nanorod. A spatially-resolved second harmonic image shows a bright spot at the edge of the nanorod, which is attributed to the elaborated intensity of both fundamental laser light and second harmonic light inside the nanowire owing to cavity-mode formation.

  7. Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.

    PubMed

    Madden, Jeremy T; Toth, Scott J; Dettmar, Christopher M; Newman, Justin A; Oglesbee, Robert A; Hedderich, Hartmut G; Everly, R Michael; Becker, Michael; Ronau, Judith A; Buchanan, Susan K; Cherezov, Vadim; Morrow, Marie E; Xu, Shenglan; Ferguson, Dale; Makarov, Oleg; Das, Chittaranjan; Fischetti, Robert; Simpson, Garth J

    2013-07-01

    Nonlinear optical (NLO) instrumentation has been integrated with synchrotron X-ray diffraction (XRD) for combined single-platform analysis, initially targeting applications for automated crystal centering. Second-harmonic-generation microscopy and two-photon-excited ultraviolet fluorescence microscopy were evaluated for crystal detection and assessed by X-ray raster scanning. Two optical designs were constructed and characterized; one positioned downstream of the sample and one integrated into the upstream optical path of the diffractometer. Both instruments enabled protein crystal identification with integration times between 80 and 150 µs per pixel, representing a ∼10(3)-10(4)-fold reduction in the per-pixel exposure time relative to X-ray raster scanning. Quantitative centering and analysis of phenylalanine hydroxylase from Chromobacterium violaceum cPAH, Trichinella spiralis deubiquitinating enzyme TsUCH37, human κ-opioid receptor complex kOR-T4L produced in lipidic cubic phase (LCP), intimin prepared in LCP, and α-cellulose samples were performed by collecting multiple NLO images. The crystalline samples were characterized by single-crystal diffraction patterns, while α-cellulose was characterized by fiber diffraction. Good agreement was observed between the sample positions identified by NLO and XRD raster measurements for all samples studied. PMID:23765294

  8. Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline

    PubMed Central

    Madden, Jeremy T.; Toth, Scott J.; Dettmar, Christopher M.; Newman, Justin A.; Oglesbee, Robert A.; Hedderich, Hartmut G.; Everly, R. Michael; Becker, Michael; Ronau, Judith A.; Buchanan, Susan K.; Cherezov, Vadim; Morrow, Marie E.; Xu, Shenglan; Ferguson, Dale; Makarov, Oleg; Das, Chittaranjan; Fischetti, Robert; Simpson, Garth J.

    2013-01-01

    Nonlinear optical (NLO) instrumentation has been integrated with synchrotron X-ray diffraction (XRD) for combined single-platform analysis, initially targeting applications for automated crystal centering. Second-harmonic-generation microscopy and two-photon-excited ultraviolet fluorescence microscopy were evaluated for crystal detection and assessed by X-ray raster scanning. Two optical designs were constructed and characterized; one positioned downstream of the sample and one integrated into the upstream optical path of the diffractometer. Both instruments enabled protein crystal identification with integration times between 80 and 150 µs per pixel, representing a ∼103–104-fold reduction in the per-pixel exposure time relative to X-ray raster scanning. Quantitative centering and analysis of phenylalanine hydroxylase from Chromobacterium violaceum cPAH, Trichinella spiralis deubiquitinating enzyme TsUCH37, human κ-opioid receptor complex kOR-T4L produced in lipidic cubic phase (LCP), intimin prepared in LCP, and α-cellulose samples were performed by collecting multiple NLO images. The crystalline samples were characterized by single-crystal diffraction patterns, while α-cellulose was characterized by fiber diffraction. Good agreement was observed between the sample positions identified by NLO and XRD raster measurements for all samples studied. PMID:23765294

  9. Integrated modeling of advanced optical systems

    NASA Astrophysics Data System (ADS)

    Briggs, Hugh C.; Needels, Laura; Levine, B. Martin

    1993-02-01

    This poster session paper describes an integrated modeling and analysis capability being developed at JPL under funding provided by the JPL Director's Discretionary Fund and the JPL Control/Structure Interaction Program (CSI). The posters briefly summarize the program capabilities and illustrate them with an example problem. The computer programs developed under this effort will provide an unprecedented capability for integrated modeling and design of high performance optical spacecraft. The engineering disciplines supported include structural dynamics, controls, optics and thermodynamics. Such tools are needed in order to evaluate the end-to-end system performance of spacecraft such as OSI, POINTS, and SMMM. This paper illustrates the proof-of-concept tools that have been developed to establish the technology requirements and demonstrate the new features of integrated modeling and design. The current program also includes implementation of a prototype tool based upon the CAESY environment being developed under the NASA Guidance and Control Research and Technology Computational Controls Program. This prototype will be available late in FY-92. The development plan proposes a major software production effort to fabricate, deliver, support and maintain a national-class tool from FY-93 through FY-95.

  10. Bond models in linear and nonlinear optics

    NASA Astrophysics Data System (ADS)

    Aspnes, D. E.

    2015-08-01

    Bond models, also known as polarizable-point or mechanical models, have a long history in optics, starting with the Clausius-Mossotti relation but more accurately originating with Ewald's largely forgotten work in 1912. These models describe macroscopic phenomena such as dielectric functions and nonlinear-optical (NLO) susceptibilities in terms of the physics that takes place in real space, in real time, on the atomic scale. Their strengths lie in the insights that they provide and the questions that they raise, aspects that are often obscured by quantum-mechanical treatments. Statics versions were used extensively in the late 1960's and early 1970's to correlate NLO susceptibilities among bulk materials. Interest in NLO applications revived with the 2002 work of Powell et al., who showed that a fully anisotropic version reduced by more than a factor of 2 the relatively large number of parameters necessary to describe secondharmonic- generation (SHG) data for Si(111)/SiO2 interfaces. Attention now is focused on the exact physical meaning of these parameters, and to the extent that they represent actual physical quantities.

  11. Hypoxia in Microscopic Tumors

    PubMed Central

    Li, Xiao-Feng; O’Donoghue, Joseph A

    2008-01-01

    Tumor hypoxia has been commonly observed in a broad spectrum of primary solid malignancies. Hypoxia is associated with tumor progression, increased aggressiveness, enhanced metastatic potential and poor prognosis. Hypoxic tumor cells are resistant to radiotherapy and some forms of chemotherapy. Using an animal model, we recently showed that microscopic tumors less than 1 mm diameter were severely hypoxic. In this review, models and techniques for the study of hypoxia in microscopic tumors are discussed. PMID:18384940

  12. Optics In The Model 900 Projection Stepper

    NASA Astrophysics Data System (ADS)

    Hershel, Ron

    1980-09-01

    Unique optical design features were incorporated into the Model 900 Projection Stepper. The f/4 illuminator uses a pulsed 200 w mercury short arc lamp and a glass light pipe to achieve a uniform intensity of .5 w/cm2 at the reticle. The 1:1 projection lens is a folded, double-pass design which consists of a concave mirror and a cemented achromat-prism assembly. With a numerical aperture of .30, the lens achieves diffraction-limited performance at both the g and h mercury lines. Reticle to wafer alignment is detected through the lens and corrected automatically at each exposure step.

  13. Optical Model and Cross Section Uncertainties

    SciTech Connect

    Herman,M.W.; Pigni, M.T.; Dietrich, F.S.; Oblozinsky, P.

    2009-10-05

    Distinct minima and maxima in the neutron total cross section uncertainties were observed in model calculations using spherical optical potential. We found this oscillating structure to be a general feature of quantum mechanical wave scattering. Specifically, we analyzed neutron interaction with 56Fe from 1 keV up to 65 MeV, and investigated physical origin of the minima.We discuss their potential importance for practical applications as well as the implications for the uncertainties in total and absorption cross sections.

  14. A preliminary optical and electron microscopic study of the beta(1) integrin distribution pattern of human osteosarcoma-derived cells.

    PubMed

    Banai, Kiarash; Brady, Ken; McDonald, Fraser

    2004-07-01

    Immunogold labelling was used to study the organisation of the beta(1) integrins on osteosarcoma-derived osteoblasts (Saos-2 and MG-63). Monolayers of cells were prepared in multiwell culture plates on both uncovered and collagen-covered coverslips, and beta(1) integrins were primarily labelled using mouse monoclonal antibodies to beta(1) integrins. Indirect immunofluorescence labels using an anti-mouse fluorescein-conjugated goat antibody showed an even distribution of the beta(1) integrins on the cell membranes of all cell types used. A concentration of 2 microg/ml of the primary antibodies and a 1:100 dilution of the secondary antibodies were determined as the optimal concentration for labelling to use with indirect localisation of the primary antibodies gold conjugated to goat anti-mouse antibodies and viewed under an electron microscope. Ten nanometre gold particles were used for transmission electron microscopy (TEM) and 40 nm gold particles for scanning electron microscopy. TEM showed that beta(1) integrins were mainly clustered on the cell membrane processes with less labelling on the cell membranes themselves. The distribution of beta(1) integrins on osteosarcoma cells supports the concept that integrins may function by forming focal adhesions at the site of the cytoplasmic membrane processes. PMID:15241608

  15. Microscopic insight into the pump-probe relaxation dynamics of superconductors: Model study of MgB2relaxation within nonlinear response theory

    NASA Astrophysics Data System (ADS)

    Baňacký, Pavol; Szöcs, Vojtech

    2016-05-01

    Here we present a quantum-statistical formulation of third-order polarization P(3)(t), which is induced in a sample by a sequence of incident external fields, and serves as a source of an emitted radiation field detected as a signal in pump-probe (PP) experiments. Our treatment is based on the perturbation expansion of the non-equilibrium density matrix for calculation of multi-time correlation functions, and the corresponding response function, at finite temperature. As a model for our study, the high-temperature superconductor MgB2 has been selected. Knowledge of the electronic structure of the studied system, and of the corresponding Eliashberg function that represents pertinent electron-phonon (EP) interactions, enabled us to distinguish non-equilibrium processes running over different time-periods in a sequence of interactions with laser pulses on a microscopic level. We have also derived temperature-dependent relaxation dynamics as a function of delay time between the pump and probe pulses. For the studied model system of MgB2, we have shown that an abrupt increase of the relaxation time at Tc, as detected by experiments, is the direct consequence of sudden changes in the character of EP coupling in transition from an adiabatic to a stabilized superconducting anti-adiabatic state, as it predicts the anti-adiabatic theory of electron-vibration interactions. The BCS model, which preserves the adiabatic character of EP coupling also below the critical temperature of MgB2, is basically unable to reflect the enormous sudden increase of the relaxation time. Based on diagrammatic perturbation theory, differences in the optical pump-optical probe and the optical pump-terahertz probe settings of MgB2 PP relaxation dynamics are discussed.

  16. Measurement of local currents in superconductors using an in-situ high field magneto-optical microscope

    SciTech Connect

    Wijngaarden, R.J.; Surdeanu, R.; Griessen, R.

    1997-08-01

    A contactless method is used to measure the local current density in superconductors at fields up to 7 T with a spatial resolution better than 1 {mu}m. The local currents are derived from magneto-optical images using a powerful inversion scheme. The interpretation of global experimental data on flux flow, flux creep and relaxation phenomena is hindered if the magnetic moment of the sample as a whole is measured, while the current flow in the sample is not uniform. This problem can be overcome by the local measurement of the currents flowing in the sample that is discussed below.

  17. HIGH TEMPERATURE MICROSCOPE AND FURNACE

    DOEpatents

    Olson, D.M.

    1961-01-31

    A high-temperature microscope is offered. It has a reflecting optic situated above a molten specimen in a furnace and reflecting the image of the same downward through an inert optic member in the floor of the furnace, a plurality of spaced reflecting plane mirrors defining a reflecting path around the furnace, a standard microscope supported in the path of and forming the end terminus of the light path.

  18. Fractional-order variational optical flow model for motion estimation.

    PubMed

    Chen, Dali; Sheng, Hu; Chen, YangQuan; Xue, Dingyü

    2013-05-13

    A new class of fractional-order variational optical flow models, which generalizes the differential of optical flow from integer order to fractional order, is proposed for motion estimation in this paper. The corresponding Euler-Lagrange equations are derived by solving a typical fractional variational problem, and the numerical implementation based on the Grünwald-Letnikov fractional derivative definition is proposed to solve these complicated fractional partial differential equations. Theoretical analysis reveals that the proposed fractional-order variational optical flow model is the generalization of the typical Horn and Schunck (first-order) variational optical flow model and the second-order variational optical flow model, which provides a new idea for us to study the optical flow model and has an important theoretical implication in optical flow model research. The experiments demonstrate the validity of the generalization of differential order. PMID:23547225

  19. Optical properties of irradiated imidazolium based room temperature ionic liquids: new microscopic insights into the radiation induced mutations.

    PubMed

    Guleria, Apurav; Singh, Ajay K; Adhikari, Soumyakanti

    2015-04-28

    Considering the future perspectives of room temperature ionic liquids (RTILs) in areas involving high radiation fields (such as the nuclear fuel cycle and space applications), it is essential to probe and have a microscopic understanding of the radiation induced perturbations in the molecular structures and the intrinsic bonding interactions existing in the ILs. Herein, a focused investigation concerning the photophysical behavior of post-irradiated FAP (fluoroalkyl phosphate) imidazolium ILs revealed considerable rearrangements and bonding realignments of the ionic moieties in the ILs on irradiation, however, their physicochemical properties do not change significantly even at high absorbed doses. Most interestingly, the well-established excitation wavelength dependent fluorescence (FL) behavior of the ILs was considerably perturbed on irradiation and this is attributed to the radiation induced decoupling of pre-existing different associated structures of ions, and the subsequent formation of oligomers and other species containing multiple bond order groups. This was further substantiated by vibrational studies, where peaks appearing in the range 1600-1800 cm(-1) indicated the formation of double bonded products. Furthermore, for the hydroxyl functionalized (in the alkyl side chain of the imidazolium cation) IL, a blue shift in the O-H stretching frequency was observed for the -OH group H-bonded to the FAP anion (νOH···[FAP](-)), while a red shift was observed for the H-bonded -OH groups in the cationic clusters. The FL lifetime values were found to increase with irradiation, which clearly indicates the enhancement in the rigidity level in the vicinity of the ions, thereby hindering the non-radiative decay processes. Such studies could contribute to the fundamental understanding of the radiation driven perturbations in the structure-property relationships, which eventually affect the radiolytic degradation pathways and the product distribution in RTILs. PMID

  20. Proper alignment of the microscope.

    PubMed

    Rottenfusser, Rudi

    2013-01-01

    The light microscope is merely the first element of an imaging system in a research facility. Such a system may include high-speed and/or high-resolution image acquisition capabilities, confocal technologies, and super-resolution methods of various types. Yet more than ever, the proverb "garbage in-garbage out" remains a fact. Image manipulations may be used to conceal a suboptimal microscope setup, but an artifact-free image can only be obtained when the microscope is optimally aligned, both mechanically and optically. Something else is often overlooked in the quest to get the best image out of the microscope: Proper sample preparation! The microscope optics can only do its job when its design criteria are matched to the specimen or vice versa. The specimen itself, the mounting medium, the cover slip, and the type of immersion medium (if applicable) are all part of the total optical makeup. To get the best results out of a microscope, understanding the functions of all of its variable components is important. Only then one knows how to optimize these components for the intended application. Different approaches might be chosen to discuss all of the microscope's components. We decided to follow the light path which starts with the light source and ends at the camera or the eyepieces. To add more transparency to this sequence, the section up to the microscope stage was called the "Illuminating Section", to be followed by the "Imaging Section" which starts with the microscope objective. After understanding the various components, we can start "working with the microscope." To get the best resolution and contrast from the microscope, the practice of "Koehler Illumination" should be understood and followed by every serious microscopist. Step-by-step instructions as well as illustrations of the beam path in an upright and inverted microscope are included in this chapter. A few practical considerations are listed in Section 3. PMID:23931502

  1. The Abelian Higgs model on Optical Lattice?

    NASA Astrophysics Data System (ADS)

    Meurice, Yannick; Tsai, Shan-Wen; Bazavov, Alexei; Zhang, Jin

    2015-03-01

    We study the Lattice Gauge Theory of the U(1)-Higgs model in 1+1 dimensions in the strongly coupled regime. We discuss the plaquette corrections to the effective theory where link variables are integrated out. We discuss matching with the second-order perturbation theory effective Hamiltonian for various Bose-Hubbard models. This correspondence can be exploited for building a lattice gauge theory simulator on optical lattices. We propose to implement the quantum rotors which appear in the Hamiltonian formulation using Bose mixtures or p-orbitals. Recent progress on magnetic effects in 2+1 dimensions will be discussed. Supported by the Army Research Office of the Department of Defense under Award Number W911NF-13-1-0119.

  2. Microscopic Polyangiitis

    PubMed Central

    Chung, Sharon A.; Seo, Philip

    2010-01-01

    Synopsis In 1923, Friedrich Wohlwill described two patients with a “microscopic form of periarteritis nodosa”, which was distinct from classical polyarteritis nodosa. This disease, now known as microscopic polyangiitis (MPA), is a primary systemic vasculitis characterized by inflammation of the small-caliber blood vessels and the presence of circulating antineutrophil cytoplasmic antibodies (ANCA). Typically, microscopic polyangiitis presents with glomerulonephritis and pulmonary capillaritis, although involvement of the skin, nerves, and gastrointestinal tract is not uncommon. Treatment of MPA generally requires use of a cytotoxic agent (such as cyclophosphamide) in addition to high-dose glucocorticoids. Recent research has focused on identifying alternate treatment strategies that minimize or eliminate exposure to cytotoxic agents. This article will review the history, pathogenesis, clinical manifestations, and treatment of MPA. PMID:20688249

  3. Towards coherent manipulation of the ground states of single cesium atom confined in a microscopic far-off-resonance optical dipole trap

    NASA Astrophysics Data System (ADS)

    Diao, Wenting; He, Jun; Liu, Bei; Wang, Junmin

    2012-11-01

    This work deals with the cooling and trapping of single cesium (Cs) atoms in a large-magnetic-gradient magneto-optical trap (MOT) and the confinement of single Cs atoms in a far-off-resonance optical dipole trap (FORT). The experiment setup is based on two large-numerical-aperture lens assemblies which allow us to strongly focus a 1064-nm TEM00-mode Gaussian laser beam to a 1/e2 radius of ~ 2.3 μm to form a microscopic FORT for isolating single atom with environment and to efficiently collect the laser-induced-fluorescence photons emitted by single atoms for detecting and recognizing single atom's internal state. We have tried both of "bottom-up" and "top-down" loading schemes to confine single atoms in the microscopic FORT. In the "bottom-up" scheme, we have successfully prepared single Cs atoms in the MOT and transferred it into FORT with a probability of almost 100%. In the "top-down" scheme, we have achieved ~ 74% of single atom loading probability in the FORT using light-assisted collisions induced by blue detuning laser and with prepared many Cs atoms in the MOT. The relaxation time in hyperfine level of ground state of trapped single Cs atom is measured to be ~5.4 s. To coherently manipulate atomic quantum bits (qubit) encoded in the clock states (mF = 0 states in Fg = 3 and 4 hyperfine levels) of single Cs atom via the two-photon simulated Raman adiabatic passage (STIRAP), we have prepared two phase-locked laser beams with a frequency difference of ~ 9.192 GHz by optically injecting an 852-nm master laser to lock the +1-order sideband of a 9-GHz current-modulated slave diode laser. The two phase-locked laser beams are used to drive STIRAP process in the Λ-type three-level system consists of Cs |6S1/2 Fg = 4, mF = 0> and |6S1/2 Fg = 3, mF = 0< long-lived clock states and Cs |6S1/2 Fe = 4, mF = +1 > excited state with the single-photon detuning of ~ -20 GHz. Rabi flopping experiments are in progress.

  4. Microscopic modeling of mass and charge distributions in the spontaneous fission of 240Pu

    NASA Astrophysics Data System (ADS)

    Sadhukhan, Jhilam; Nazarewicz, Witold; Schunck, Nicolas

    2016-01-01

    We propose a methodology to calculate microscopically the mass and charge distributions of spontaneous fission yields. We combine the multidimensional minimization of collective action for fission with stochastic Langevin dynamics to track the relevant fission paths from the ground-state configuration up to scission. The nuclear potential energy and collective inertia governing the tunneling motion are obtained with nuclear density functional theory in the collective space of shape deformations and pairing. We obtain a quantitative agreement with experimental data and find that both the charge and mass distributions in the spontaneous fission of 240Pu are sensitive both to the dissipation in collective motion and to adiabatic fission characteristics.

  5. Aberration correction during real time in vivo imaging of bone marrow with sensorless adaptive optics confocal microscope

    NASA Astrophysics Data System (ADS)

    Wang, Zhibin; Wei, Dan; Wei, Ling; He, Yi; Shi, Guohua; Wei, Xunbin; Zhang, Yudong

    2014-08-01

    We have demonstrated adaptive correction of specimen-induced aberration during in vivo imaging of mouse bone marrow vasculature with confocal fluorescence microscopy. Adaptive optics system was completed with wavefront sensorless correction scheme based on stochastic parallel gradient descent algorithm. Using image sharpness as the optimization metric, aberration correction was performed based upon Zernike polynomial modes. The experimental results revealed the improved signal and resolution leading to a substantially enhanced image contrast with aberration correction. The image quality of vessels at 38- and 75-μm depth increased three times and two times, respectively. The corrections allowed us to detect clearer bone marrow vasculature structures at greater contrast and improve the signal-to-noise ratio.

  6. High-dynamic-range microscope imaging based on exposure bracketing in full-field optical coherence tomography.

    PubMed

    Leong-Hoi, Audrey; Montgomery, Paul C; Serio, Bruno; Twardowski, Patrice; Uhring, Wilfried

    2016-04-01

    By applying the proposed high-dynamic-range (HDR) technique based on exposure bracketing, we demonstrate a meaningful reduction in the spatial noise in image frames acquired with a CCD camera so as to improve the fringe contrast in full-field optical coherence tomography (FF-OCT). This new signal processing method thus allows improved probing within transparent or semitransparent samples. The proposed method is demonstrated on 3 μm thick transparent polymer films of Mylar, which, due to their transparency, produce low contrast fringe patterns in white-light interference microscopy. High-resolution tomographic analysis is performed using the technique. After performing appropriate signal processing, resulting XZ sections are observed. Submicrometer-sized defects can be lost in the noise that is present in the CCD images. With the proposed method, we show that by increasing the signal-to-noise ratio of the images, submicrometer-sized defect structures can thus be detected. PMID:27192224

  7. Characterization of perovskite film prepared by pulsed laser deposition on ferritic stainless steel using microscopic and optical methods

    NASA Astrophysics Data System (ADS)

    Durda, E.; Jaglarz, J.; Kąc, S.; Przybylski, K.; El Kouari, Y.

    2016-06-01

    The perovskite La0.6Sr0.4Co0.2Fe0.8O3-δ (LSCF48) film was deposited on Crofer 22 APU ferritic stainless steel by pulsed laser deposition (PLD). Morphological studies of the sample were performed using scanning electron microscopy (SEM) and atomic force microscopy (AFM). Information about film thickness and surface topography of the film and the steel substrate were obtained using following optical methods: spectroscopic ellipsometry (SE), bidirectional reflection distribution function (BRDF) and total integrated reflectometry (TIS). In particular, the BRDF study, being complementary to atomic force microscopy, yielded information about surface topography. Using the previously mentioned methods, the following statistic surface parameters were determined: root-mean square (rms) roughness and autocorrelation length by determining the power spectral density (PSD) function of surface irregularities.

  8. Martian Microscope

    NASA Technical Reports Server (NTRS)

    2004-01-01

    The microscopic imager (circular device in center) is in clear view above the surface at Meridiani Planum, Mars, in this approximate true-color image taken by the panoramic camera on the Mars Exploration Rover Opportunity. The image was taken on the 9th sol of the rover's journey. The microscopic imager is located on the rover's instrument deployment device, or arm. The arrow is pointing to the lens of the instrument. Note the dust cover, which flips out to the left of the lens, is open. This approximated color image was created using the camera's violet and infrared filters as blue and red.

  9. Optical Performance Modeling of FUSE Telescope Mirror

    NASA Technical Reports Server (NTRS)

    Saha, Timo T.; Ohl, Raymond G.; Friedman, Scott D.; Moos, H. Warren

    2000-01-01

    We describe the Metrology Data Processor (METDAT), the Optical Surface Analysis Code (OSAC), and their application to the image evaluation of the Far Ultraviolet Spectroscopic Explorer (FUSE) mirrors. The FUSE instrument - designed and developed by the Johns Hopkins University and launched in June 1999 is an astrophysics satellite which provides high resolution spectra (lambda/Delta(lambda) = 20,000 - 25,000) in the wavelength region from 90.5 to 118.7 nm The FUSE instrument is comprised of four co-aligned, normal incidence, off-axis parabolic mirrors, four Rowland circle spectrograph channels with holographic gratings, and delay line microchannel plate detectors. The OSAC code provides a comprehensive analysis of optical system performance, including the effects of optical surface misalignments, low spatial frequency deformations described by discrete polynomial terms, mid- and high-spatial frequency deformations (surface roughness), and diffraction due to the finite size of the aperture. Both normal incidence (traditionally infrared, visible, and near ultraviolet mirror systems) and grazing incidence (x-ray mirror systems) systems can be analyzed. The code also properly accounts for reflectance losses on the mirror surfaces. Low frequency surface errors are described in OSAC by using Zernike polynomials for normal incidence mirrors and Legendre-Fourier polynomials for grazing incidence mirrors. The scatter analysis of the mirror is based on scalar scatter theory. The program accepts simple autocovariance (ACV) function models or power spectral density (PSD) models derived from mirror surface metrology data as input to the scatter calculation. The end product of the program is a user-defined pixel array containing the system Point Spread Function (PSF). The METDAT routine is used in conjunction with the OSAC program. This code reads in laboratory metrology data in a normalized format. The code then fits the data using Zernike polynomials for normal incidence

  10. Microscopic analysis of Be,1110 elastic scattering on protons and nuclei, and breakup processes of 11Be within the 10Be +n cluster model

    NASA Astrophysics Data System (ADS)

    Lukyanov, V. K.; Kadrev, D. N.; Zemlyanaya, E. V.; Spasova, K.; Lukyanov, K. V.; Antonov, A. N.; Gaidarov, M. K.

    2015-03-01

    The density distributions of 10Be and 11Be nuclei obtained within the quantum Monte Carlo model and the generator coordinate method are used to calculate the microscopic optical potentials (OPs) and cross sections of elastic scattering of these nuclei on protons and 12C at energies E <100 MeV/nucleon. The real part of the OP is calculated using the folding model with the exchange terms included, while the imaginary part of the OP that reproduces the phase of scattering is obtained in the high-energy approximation. In this hybrid model of OP the free parameters are the depths of the real and imaginary parts obtained by fitting the experimental data. The well-known energy dependence of the volume integrals is used as a physical constraint to resolve the ambiguities of the parameter values. The role of the spin-orbit potential and the surface contribution to the OP is studied for an adequate description of available experimental elastic scattering cross-section data. Also, the cluster model, in which 11Be consists of a n -halo and the 10Be core, is adopted. Within the latter, the breakup cross sections of 11Be nucleus on 9Be,93Nb,181Ta , and 238U targets and momentum distributions of 10Be fragments are calculated and compared with the existing experimental data.

  11. Integrated elastic microscope device

    NASA Astrophysics Data System (ADS)

    Lee, W. M.; Wright, D.; Watkins, R.; Cen, Zi

    2015-03-01

    The growing power of imaging and computing power of smartphones is creating the possibility of converting your smartphone into a high power pocket microscopy system. High quality miniature microscopy lenses attached to smartphone are typically made with glass or plastics that can only be produce at low cost with high volume. To revise the paradigm of microscope lenses, we devised a simple droplet lens fabrication technique that which produces low cost and high performance lens. Each lens is integrated into thin 3-D printed holder with complimentary light emitted diode (LEDs) that clips onto majority of smartphones. The integrated device converts a smartphone into a high power optical microscope/dermatoscope at around $2. This low cost device has wide application in a multitude of practical uses such as material inspection, dermascope and educational microscope.

  12. Precise autofocusing microscope with rapid response

    NASA Astrophysics Data System (ADS)

    Liu, Chien-Sheng; Jiang, Sheng-Hong

    2015-03-01

    The rapid on-line or off-line automated vision inspection is a critical operation in the manufacturing fields. Accordingly, this present study designs and characterizes a novel precise optics-based autofocusing microscope with a rapid response and no reduction in the focusing accuracy. In contrast to conventional optics-based autofocusing microscopes with centroid method, the proposed microscope comprises a high-speed rotating optical diffuser in which the variation of the image centroid position is reduced and consequently the focusing response is improved. The proposed microscope is characterized and verified experimentally using a laboratory-built prototype. The experimental results show that compared to conventional optics-based autofocusing microscopes, the proposed microscope achieves a more rapid response with no reduction in the focusing accuracy. Consequently, the proposed microscope represents another solution for both existing and emerging industrial applications of automated vision inspection.

  13. Optical - IR stellar astrophysics: Models vs. Observations

    NASA Astrophysics Data System (ADS)

    Ferguson, J. W.; Penley, J. J.; Alexander, D. R.; Allard, F.; Hauschildt, P. H.

    2001-12-01

    Recent observational catalogs by Lancon & Wood (2000, A&AS, 146, 217) and Pickles (1998, PASP, 110, 863) among others include the spectra of dozens of stars covering an unprecedented wavelength range from the optical to near-infrared. These observations include a wide range of stellar temperatures, and many types of stars including some with unusual chemical compositions. Such observations are a vast improvement over previous "optical-only" or "infrared-only" spectra. Having good observations with such a broad wavelength range make it possible to better model the conditions of these stars. Carefully fitting the effects of molecules such as H2O, CO, VO, and TiO in the spectra of these stars is paramount in our effort to better understand these stars. We show the results of PHOENIX (Hauschildt & Baron, 1999, J. Comp. Appl. Math., 102, 41) stellar atmosphere models with recent improvements in the TiO, H2O and a few other minor molecular opacity sources. Models computed with different sources of molecular opacity (H2O for example) show varying degrees of accuracy of fit, although none of the sources given are perfect fits to the observed spectral shape. Comparisons with the observations are made and the resulting effective temperature/spectral class scale is shown. Low temperature astrophysics at Wichita State University is supported by NSF grant No. EPS-9874732 with matching support from the State of Kansas, by a NASA EPSCoR grant NCC5-168 and NASA LTSA grant NAG5-3435.

  14. [Nonarteritic ischemic optic neuropathy animal model and its treatment applications].

    PubMed

    Chuman, Hideki

    2014-04-01

    Nonarteritic ischemic optic neuropathy (NAION) is one of the most common acute unilaterally onset optic nerve diseases. One management problem in terms of NAION is the difficulty of differential diagnosis between NAION and anterior optic neuritis (ON). A second problem is that there is no established treatment for the acute stage of NAION. A third problem is that there is no preventive treatment for a subsequent attack on the fellow eye, estimated to occur in 15 to 25% of patients with NAION. For differentiation of acute NAION from anterior optic neuritis, we investigated the usefulness of laser speckle flowgraphy (LSFG). In the normal control group, the tissue blood flow did not significantly differ between the right and left eyes. In the NAION group, all 6 patients had 29.5% decreased mean blur rate (MBR), which correlates to optic disc blood flow, of the NAION eye compared with the unaffected eye. In the anterior ON group, all 6 cases had 15.9% increased MBR of the anterior ON eye compared with the unaffected eye. Thus, LSFG showed a difference of the underlying pathophysiology between NAION and anterior ON despite showing disc swelling in both groups and could be useful for differentiating both groups. For the treatment of acute stage of NAION, we tried to reproduce the rodent model of NAION (rNAION) developed by Bernstein and colleagues. To induce rNAION, after the administration of rose bengal(RB) (2.5 mM) into the tail vein of SD rats, the small vessels of the left optic nerve were photoactivated using a 514 nm argon green laser (RB-laser-induction). In the RB-laser-induction eyes, the capillaries within the optic disc were reduced markedly, the optic disc became swollen, and fluorescein angiography showed filling defect in the choroid and the optic disc at an early stage, followed by hyperfluorescence at a late stage. Electrophysiological evaluation revealed that visual evoked potential (VEP) amplitude was significantly decreased but an electroretinogram

  15. Optical trapping of a spherically symmetric sphere in the ray-optics regime: a model for optical tweezers upon cells

    SciTech Connect

    Chang Yiren; Hsu Long; Chi Sien

    2006-06-01

    Since their invention in 1986, optical tweezers have become a popular manipulation and force measurement tool in cellular and molecular biology. However, until recently there has not been a sophisticated model for optical tweezers on trapping cells in the ray-optics regime. We present a model for optical tweezers to calculate the optical force upon a spherically symmetric multilayer sphere representing a common biological cell. A numerical simulation of this model shows that not only is the magnitude of the optical force upon a Chinese hamster ovary cell significantly three times smaller than that upon a polystyrene bead of the same size, but the distribution of the optical force upon a cell is also much different from that upon a uniform particle, and there is a 30% difference in the optical trapping stiffness of these two cases. Furthermore, under a small variant condition for the refractive indices of any adjacent layers of the sphere, this model provides a simple approximation to calculate the optical force and the stiffness of an optical tweezers system.

  16. Statistical Modeling of Retinal Optical Coherence Tomography.

    PubMed

    Amini, Zahra; Rabbani, Hossein

    2016-06-01

    In this paper, a new model for retinal Optical Coherence Tomography (OCT) images is proposed. This statistical model is based on introducing a nonlinear Gaussianization transform to convert the probability distribution function (pdf) of each OCT intra-retinal layer to a Gaussian distribution. The retina is a layered structure and in OCT each of these layers has a specific pdf which is corrupted by speckle noise, therefore a mixture model for statistical modeling of OCT images is proposed. A Normal-Laplace distribution, which is a convolution of a Laplace pdf and Gaussian noise, is proposed as the distribution of each component of this model. The reason for choosing Laplace pdf is the monotonically decaying behavior of OCT intensities in each layer for healthy cases. After fitting a mixture model to the data, each component is gaussianized and all of them are combined by Averaged Maximum A Posterior (AMAP) method. To demonstrate the ability of this method, a new contrast enhancement method based on this statistical model is proposed and tested on thirteen healthy 3D OCTs taken by the Topcon 3D OCT and five 3D OCTs from Age-related Macular Degeneration (AMD) patients, taken by Zeiss Cirrus HD-OCT. Comparing the results with two contending techniques, the prominence of the proposed method is demonstrated both visually and numerically. Furthermore, to prove the efficacy of the proposed method for a more direct and specific purpose, an improvement in the segmentation of intra-retinal layers using the proposed contrast enhancement method as a preprocessing step, is demonstrated. PMID:26800532

  17. Study on mechanical properties and damage behaviors of Kevlar fiber reinforced epoxy composites by digital image correlation technique under optical microscope

    NASA Astrophysics Data System (ADS)

    Gao, Xiang; Shao, Wenquan; Ji, Hongwei

    2010-10-01

    Kevlar fiber-reinforced epoxy (KFRE) composites are widely used in the fields of aerospace, weapon, shipping, and civil industry, due to their outstanding capabilities. In this paper, mechanical properties and damage behaviors of KFRE laminate (02/902) were tested and studied under tension condition. To precisely measure the tensile mechanical properties of the material and investigate its micro-scale damage evolution, a micro-image measuring system with in-situ tensile device was designed. The measuring system, by which the in-situ tensile test can be carried out and surface morphology evolution of the tensile specimen can be visually monitored and recorded during the process of loading, includes an ultra-long working distance zoom microscope and a in-situ tensile loading device. In this study, a digital image correlation method (DICM) was used to calculate the deformation of the tensile specimen under different load levels according to the temporal series images captured by an optical microscope and CCD camera. Then, the elastic modulus and Poisson's ratio of the KFRE was obtained accordingly. The damage progresses of the KFRE laminates were analyzed. Experimental results indicated that: (1) the KFRE laminate (02/902) is almost elastic, its failure mode is brittle tensile fracture.(2) Mechanical properties parameters of the material are as follows: elastic modulus is 14- 16GPa, and tensile ultimate stress is 450-480 Mpa respectively. (3) The damage evolution of the material is that cracks appear in epoxy matrix firstly, then, with the increasing of the tensile loading, matrix cracks add up and extend along a 45° angle direction with tensile load. Furthermore, decohesion between matrix and fibers as well as delamination occurs. Eventually, fibers break and the material is damaged.

  18. Microscopic models of non-radiative and high-current effects in LEDs: state of the art and future developments

    NASA Astrophysics Data System (ADS)

    Bertazzi, Francesco; Goano, Michele; Calciati, Marco; Zhou, Xiangyu; Ghione, Giovanni; Bellotti, Enrico

    2014-02-01

    Auger recombination is at the hearth of the debate on droop, the decline of the internal quantum efficiency at high injection levels. The theory of Auger recombination in quantum wells is reviewed. The proposed microscopic model is based on a full-Brillouin-zone description of the electronic structure obtained by nonlocal empirical pseudopotential calculations and the linear combination of bulk bands. The lack of momentum conservation along the confining direction in InGaN/GaN quantum wells enhances direct (i.e. phononless) Auger transitions, leading to Auger coefficients in the range of those predicted for phonon-dressed processes in bulk InGaN.

  19. Science 101: How Does an Electron Microscope Work?

    ERIC Educational Resources Information Center

    Robertson, Bill

    2013-01-01

    Contrary to popular opinion, electron microscopes are not used to look at electrons. They are used to look for structure in things that are too small to observe with an optical microscope, or to obtain images that are magnified much more than is obtainable with an optical microscope. To understand how electron microscopes work, it will help to go…

  20. Microscopic modeling of mass and charge distributions in the spontaneous fission of 240Pu

    DOE PAGESBeta

    Sandhukhan, Jhilam; Nazarewicz, Witold; Schunck, Nicolas

    2016-01-20

    We propose a methodology to calculate microscopically the mass and charge distributions of spontaneous fission yields. We combine the multidimensional minimization of collective action for fission with stochastic Langevin dynamics to track the relevant fission paths from the ground-state configuration up to scission. The nuclear potential energy and collective inertia governing the tunneling motion are obtained with nuclear density functional theory in the collective space of shape deformations and pairing. As a result, we obtain a quantitative agreement with experimental data and find that both the charge and mass distributions in the spontaneous fission of 240Pu are sensitive both tomore » the dissipation in collective motion and to adiabatic fission characteristics.« less

  1. Macroscopic rates, microscopic observations, and molecular models of the dissolution of carbonate phases.

    SciTech Connect

    Duckworth, Owen W.; Cygan, Randall Timothy; Martin, Scot T.

    2004-05-01

    Bulk and surface energies are calculated for endmembers of the isostructural rhombohedral carbonate mineral family, including Ca, Cd, Co, Fe, Mg, Mn, Ni, and Zn compositions. The calculations for the bulk agree with the densities, bond distances, bond angles, and lattice enthalpies reported in the literature. The calculated energies also correlate with measured dissolution rates: the lattice energies show a log-linear relationship to the macroscopic dissolution rates at circumneutral pH. Moreover, the energies of ion pairs translated along surface steps are calculated and found to predict experimentally observed microscopic step retreat velocities. Finally, pit formation excess energies decrease with increasing pit size, which is consistent with the nonlinear dissolution kinetics hypothesized for the initial stages of pit formation.

  2. Microscopic dynamical description of proton-induced fission with the constrained molecular dynamics model

    NASA Astrophysics Data System (ADS)

    Vonta, N.; Souliotis, G. A.; Veselsky, M.; Bonasera, A.

    2015-08-01

    The microscopic description of nuclear fission still remains a topic of intense basic research. Understanding nuclear fission, apart from a theoretical point of view, is of practical importance for energy production and the transmutation of nuclear waste. In nuclear astrophysics, fission sets the upper limit to the nucleosynthesis of heavy elements via the r process. In this work we initiated a systematic study of intermediate-energy proton-induced fission using the constrained molecular dynamics (CoMD) code. The CoMD code implements an effective interaction with a nuclear matter compressibility of K =200 (soft equation of state) with several forms of the density dependence of the nucleon-nucleon symmetry potential. Moreover, a constraint is imposed in the phase-space occupation for each nucleon restoring the Pauli principle at each time step of the collision. A proper choice of the surface parameter of the effective interaction has been made to describe fission. In this work, we present results of fission calculations for proton-induced reactions on: (a) 232Th at 27 and 63 MeV; (b) 235U at 10, 30, 60, and 100 MeV; and (c) 238U at 100 and 660 MeV. The calculated observables include fission-fragment mass distributions, total fission energies, neutron multiplicities, and fission times. These observables are compared to available experimental data. We show that the microscopic CoMD code is able to describe the complicated many-body dynamics of the fission process at intermediate and high energy and give a reasonable estimate of the fission time scale. Sensitivity of the results to the density dependence of the nucleon symmetry potential (and, thus, the nuclear symmetry energy) is found. Further improvements of the code are necessary to achieve a satisfactory description of low-energy fission in which shell effects play a dominant role.

  3. Imaging arrangement and microscope

    DOEpatents

    Pertsinidis, Alexandros; Chu, Steven

    2015-12-15

    An embodiment of the present invention is an imaging arrangement that includes imaging optics, a fiducial light source, and a control system. In operation, the imaging optics separate light into first and second tight by wavelength and project the first and second light onto first and second areas within first and second detector regions, respectively. The imaging optics separate fiducial light from the fiducial light source into first and second fiducial light and project the first and second fiducial light onto third and fourth areas within the first and second detector regions, respectively. The control system adjusts alignment of the imaging optics so that the first and second fiducial light projected onto the first and second detector regions maintain relatively constant positions within the first and second detector regions, respectively. Another embodiment of the present invention is a microscope that includes the imaging arrangement.

  4. The computer as a physical system: A microscopic quantum mechanical Hamiltonian model of computers as represented by Turing machines

    NASA Astrophysics Data System (ADS)

    Benioff, Paul

    1980-05-01

    In this paper a microscopic quantum mechanical model of computers as represented by Turing machines is constructed. It is shown that for each number N and Turing machine Q there exists a Hamiltonian H N Q and a class of appropriate initial states such that if c is such an initial state, then ψ Q N (t)=exp(-1 H N Q t) ψ Q N (0) correctly describes at times t 3, t 6,⋯, t 3N model states that correspond to the completion of the first, second, ⋯, Nth computation step of Q. The model parameters can be adjusted so that for an arbitrary time interval Δ around t 3, t 6,⋯, t 3N, the "machine" part of ψ Q N (t) is stationary.

  5. Suppression of single-cesium-atom heating in a microscopic optical dipole trap for demonstration of an 852-nm triggered single-photon source

    NASA Astrophysics Data System (ADS)

    Liu, Bei; Jin, Gang; He, Jun; Wang, Junmin

    2016-07-01

    We investigate single-cesium-atom heating owing to the momentum accumulation process induced by the resonant pulsed excitation in a microscopic optical dipole trap formed by a strongly focused 1064-nm laser beam. The heating depends on the trap frequency, which restricts the maximum repetition rate of the pulsed excitation. We experimentally verify the heating of a single atom and then demonstrate how to suppress it with an optimized pulsed excitation and cooling method. The typical trap lifetime of a single cesium atom is extended from 108 ±6 μ s to 2536 ±31 ms , and the corresponding number of excitations increases from ˜108 to ˜360 000 . In applying this faster cooling method, we use the trapped single cesium atom as a triggered single-photon source at an excitation repetition rate of 10 MHz. The second-order intensity correlations of the emitted single photons are characterized by implementing a Hanbury Brown and Twiss setup, and a clear antibunching effect has been observed.

  6. Radiative decay rate of excitons in square quantum wells: Microscopic modeling and experiment

    NASA Astrophysics Data System (ADS)

    Khramtsov, E. S.; Belov, P. A.; Grigoryev, P. S.; Ignatiev, I. V.; Verbin, S. Yu.; Efimov, Yu. P.; Eliseev, S. A.; Lovtcius, V. A.; Petrov, V. V.; Yakovlev, S. L.

    2016-05-01

    The binding energy and the corresponding wave function of excitons in GaAs-based finite square quantum wells (QWs) are calculated by the direct numerical solution of the three-dimensional Schrödinger equation. The precise results for the lowest exciton state are obtained by the Hamiltonian discretization using the high-order finite-difference scheme. The microscopic calculations are compared with the results obtained by the standard variational approach. The exciton binding energies found by two methods coincide within 0.1 meV for the wide range of QW widths. The radiative decay rate is calculated for QWs of various widths using the exciton wave functions obtained by direct and variational methods. The radiative decay rates are confronted with the experimental data measured for high-quality GaAs/AlGaAs and InGaAs/GaAs QW heterostructures grown by molecular beam epitaxy. The calculated and measured values are in good agreement, though slight differences with earlier calculations of the radiative decay rate are observed.

  7. Damping-induced size effect in surface plasmon resonance in metallic nano-particles: Comparison of RPA microscopic model with numerical finite element simulation (COMSOL) and Mie approach

    NASA Astrophysics Data System (ADS)

    Kluczyk, K.; Jacak, W.

    2016-01-01

    We investigate metal nano-particle size influence on plasmon resonance within theoretical and numerical approaches and compare results with available experimental data in order to improve resolution of optical identification of metallic nano-particle size and shape. The developed microscopic approach is the quantum random phase approximation model of plasmons in metallic nano-particles including plasmon damping by electron scattering and by radiative losses (i.e., by the so-called Lorentz friction). The numerical approach is by the finite element method solution of Maxwell equations for incident planar wave in spherical (also nano-rod, spheroid) geometry upon the system COMSOL and Mie treatment, supplemented with phenomenologically modeled dielectric function of metallic nano-particle. Comparison with experimental data for light extinction in Au and Ag nano-particle colloidal solutions with different particle sizes is presented. The crucial role of the Lorentz friction in the size effect of plasmon resonance in large (e.g., 20-60 nm for Au in vacuum) metallic nanoparticles is evidenced.

  8. Performance of signal-to-noise ratio estimation for scanning electron microscope using autocorrelation Levinson-Durbin recursion model.

    PubMed

    Sim, K S; Lim, M S; Yeap, Z X

    2016-07-01

    A new technique to quantify signal-to-noise ratio (SNR) value of the scanning electron microscope (SEM) images is proposed. This technique is known as autocorrelation Levinson-Durbin recursion (ACLDR) model. To test the performance of this technique, the SEM image is corrupted with noise. The autocorrelation function of the original image and the noisy image are formed. The signal spectrum based on the autocorrelation function of image is formed. ACLDR is then used as an SNR estimator to quantify the signal spectrum of noisy image. The SNR values of the original image and the quantified image are calculated. The ACLDR is then compared with the three existing techniques, which are nearest neighbourhood, first-order linear interpolation and nearest neighbourhood combined with first-order linear interpolation. It is shown that ACLDR model is able to achieve higher accuracy in SNR estimation. PMID:26871742

  9. Optimization of a Widefield Structured Illumination Microscope for Non-Destructive Assessment and Quantification of Nuclear Features in Tumor Margins of a Primary Mouse Model of Sarcoma

    PubMed Central

    Fu, Henry L.; Mueller, Jenna L.; Javid, Melodi P.; Mito, Jeffrey K.; Kirsch, David G.; Ramanujam, Nimmi; Brown, J. Quincy

    2013-01-01

    Cancer is associated with specific cellular morphological changes, such as increased nuclear size and crowding from rapidly proliferating cells. In situ tissue imaging using fluorescent stains may be useful for intraoperative detection of residual cancer in surgical tumor margins. We developed a widefield fluorescence structured illumination microscope (SIM) system with a single-shot FOV of 2.1×1.6 mm (3.4 mm2) and sub-cellular resolution (4.4 µm). The objectives of this work were to measure the relationship between illumination pattern frequency and optical sectioning strength and signal-to-noise ratio in turbid (i.e. thick) samples for selection of the optimum frequency, and to determine feasibility for detecting residual cancer on tumor resection margins, using a genetically engineered primary mouse model of sarcoma. The SIM system was tested in tissue mimicking solid phantoms with various scattering levels to determine impact of both turbidity and illumination frequency on two SIM metrics, optical section thickness and modulation depth. To demonstrate preclinical feasibility, ex vivo 50 µm frozen sections and fresh intact thick tissue samples excised from a primary mouse model of sarcoma were stained with acridine orange, which stains cell nuclei, skeletal muscle, and collagenous stroma. The cell nuclei were segmented using a high-pass filter algorithm, which allowed quantification of nuclear density. The results showed that the optimal illumination frequency was 31.7 µm−1 used in conjunction with a 4×0.1 NA objective ( = 0.165). This yielded an optical section thickness of 128 µm and an 8.9×contrast enhancement over uniform illumination. We successfully demonstrated the ability to resolve cell nuclei in situ achieved via SIM, which allowed segmentation of nuclei from heterogeneous tissues in the presence of considerable background fluorescence. Specifically, we demonstrate that optical sectioning of fresh intact thick tissues performed

  10. Constitutive Modeling of the Mechanical Properties of Optical Fibers

    NASA Technical Reports Server (NTRS)

    Moeti, L.; Moghazy, S.; Veazie, D.; Cuddihy, E.

    1998-01-01

    Micromechanical modeling of the composite mechanical properties of optical fibers was conducted. Good agreement was obtained between the values of Young's modulus obtained by micromechanics modeling and those determined experimentally for a single mode optical fiber where the wave guide and the jacket are physically coupled. The modeling was also attempted on a polarization-maintaining optical fiber (PANDA) where the wave guide and the jacket are physically decoupled, and found not to applicable since the modeling required perfect bonding at the interface. The modeling utilized constituent physical properties such as the Young's modulus, Poisson's ratio, and shear modulus to establish bounds on the macroscopic behavior of the fiber.

  11. Modeling propagation of coherent optical pulses through molecular vapor

    SciTech Connect

    Shore, B.W.; Eberly, J.H.

    1982-01-01

    Results of modeling the mutual coupling of coherent molecular response and coherent optical pulses during propagation are described. The propagation is treated numerically, with particular emphasis on both continuum and discrete behavior associated with the quasicontinuum model.

  12. Modeling optical absorption for thermoreflectance measurements

    NASA Astrophysics Data System (ADS)

    Yang, Jia; Ziade, Elbara; Schmidt, Aaron J.

    2016-03-01

    Optical pump-probe techniques based on thermoreflectance, such as time domain thermoreflectance and frequency domain thermoreflectance (FDTR), have been widely used to characterize the thermal conductivity of thin films and the thermal conductance across interfaces. These techniques typically use a transducer layer to absorb the pump light and improve the thermoreflectance signal. The transducer, however, complicates the interpretation of the measured signal because the approximation that all the energy from the pump beam is deposited at the transducer surface is not always accurate. In this paper, we consider the effect of laser absorption in the top layer of a multilayer sample, and derive an analytical solution for the thermoreflectance signal in the diffusion regime based on volumetric heating. We analyze the measurement sensitivity to the pump absorption depth for transducers with different thermal conductivities, and investigate the additional effect of probe laser penetration depth on the measured signal. We validate our model using FDTR measurements on 490 nm thick amorphous silicon films deposited on fused silica and silicon substrates.

  13. Femtosecond photoelectron point projection microscope

    SciTech Connect

    Quinonez, Erik; Handali, Jonathan; Barwick, Brett

    2013-10-15

    By utilizing a nanometer ultrafast electron source in a point projection microscope we demonstrate that images of nanoparticles with spatial resolutions of the order of 100 nanometers can be obtained. The duration of the emission process of the photoemitted electrons used to make images is shown to be of the order of 100 fs using an autocorrelation technique. The compact geometry of this photoelectron point projection microscope does not preclude its use as a simple ultrafast electron microscope, and we use simple analytic models to estimate temporal resolutions that can be expected when using it as a pump-probe ultrafast electron microscope. These models show a significant increase in temporal resolution when comparing to ultrafast electron microscopes based on conventional designs. We also model the microscopes spectroscopic abilities to capture ultrafast phenomena such as the photon induced near field effect.

  14. (Center of excellence: Microlaser microscope)

    SciTech Connect

    Webb, R.H.

    1992-01-01

    This Center-of-Excellence grant has two components: development of an imaging system based on microlaser arrays forms a central project among a group of laser diagnostic and therapeutic efforts primarily funded outside the grant. In these first 8 months we have set up the Microlaser Microscope using small microlaser arrays. We have emphasized the basics of microlaser handling and electronic addressing and the optics of the microscope. Details of electronics and optics given here will be used in the larger arrays which should be available soon. After a description of the central Microlaser Microscope project, we touch briefly on the other projects of the Center, which have been outstandingly fruitful this year. Publications are necessarily concerned with the smaller projects, since the Microlaser Microscope is in its early stages.

  15. Center of excellence: Microlaser microscope

    NASA Astrophysics Data System (ADS)

    Webb, R. H.

    This Center-of-Excellence grant has two components: development of an imaging system based on microlaser arrays forms a central project among a group of laser diagnostic and therapeutic efforts primarily funded outside the grant. In these first 8 months we have set up the Microlaser Microscope using small microlaser arrays. We have emphasized the basics of microlaser handling and electronic addressing and the optics of the microscope. Details of electronics and optics given here will be used in the larger arrays which should be available soon. After a description of the central Microlaser Microscope project, we touch briefly on the other projects of the Center, which have been outstandingly fruitful this year. Publications are necessarily concerned with the smaller projects, since the Microlaser Microscope is in its early stages.

  16. The curvature adaptive optics system modeling

    NASA Astrophysics Data System (ADS)

    Yang, Qiang

    A curvature adaptive optics (AO) simulation system has been built. The simulation is based on the Hokupa'a-36 AO system for the NASA IRTF 3m telescope and the Hokupa'a-85 AO system for the Gemini Near Infrared Coronagraphic Imager. Several sub-models are built separately for the AO simulation system, and they are: (1) generation and propagation of atmospheric phase screens, (2) the bimorph deformable mirror (DM), (3) the curvature wave-front sensor (CWFS), (4) generation of response functions, interaction matrices and calculation of command matrices, (5) Fresnel propagation from the DM pupil to the lenslet pupil, (6) AO servo loop, and (7) post processing. The AO simulation system is then applied to the effects of DM hysteresis, and to the optimization of DM actuator patterns for the Hokupa'a-85 and Hokupa'a-36 AO systems. In the first application, an enhancing Coleman-Hodgdon model is introduced to approximate the hysteresis curves, and then the Lambert W function is introduced to calculate the inverse of the Coleman-Hodgdon equation. Step response, transfer functions and Strehl Ratios from the AO system have been compared under the cases with/without DM hysteresis. The servo-loop results show that the bandwidth of an AO system is improved greatly after the DM hysteresis is corrected. In the second application, many issues of the bimorph mirror will be considered to optimize the DM patterns, and they include the type and length of the edge benders, gap size of electrodes, DM size, and DM curvature limit.

  17. Quantum rotational band formulas from a two-parameter potential and the microscopic explanation from the fermion dynamical symmetry model

    NASA Astrophysics Data System (ADS)

    Wu, Lian-Ao; Lou, Ji-Zhong; Jing, Xiao-Gong

    1995-06-01

    In this paper, we first demonstrate the applicability of a phenomenological two-parameter formula, as introduced by Holmberg and Lipas from the Bohr Hamiltonian in a way that is different from Wu and Zeng. Second, for the first time, we show microscopically that Holmberg's two-parameter formula can be applied to diatomic molecules and that it can fit the experimental data of rotational spectra of HCl, HBr, and HF very well when the parameters are determined by two arbitrary experimental levels. Third, we derive a two-parameter formula describing γ-soft rotational spectra which is similar to the Holmberg formula, called Holmberg-like formula in this paper. The experimental yrast lines of nine nuclei in the light rare-earth region are fitted by this formula. For the nuclear γ stiffness, γ softness, and for molecular rotational spectra, all the two-parameter formulas are obtained by making use of a single potential function. It is demonstrated that the reason why one can give a unified description for those three systems is the common rotational features like the widely used harmonic oscillator approximation. More importantly, from the more microscopic nuclear fermion dynamical symmetry model (FDSM), we may derive the variable moment of inertia (VMI) model, and further obtain the Holmberg formula and Holmberg-like formula under a certain approximation, as from the nuclear geometric description within the Bohr-Mottelson model (BM). It is shown that the bridge between the descriptions of the FDSM and of the BM is the effect of stretched alignment (stretching effect). According to another interpretation of the FDSM for the nuclear stretching effect, we also give a simple formula to explain the γ-soft rotational spectra and compare the formula with the above one. Finally, we give a phenomenological generalization to the combination of the Holmberg and Holmberg-like formulas, which may describe a transition from γ-stiff rotations to γ-soft rotations.

  18. Multi-modality optical imaging of ovarian cancer in a post-menopausal mouse model

    NASA Astrophysics Data System (ADS)

    Watson, Jennifer M.; Rice, Photini Faith; Marion, Samuel L.; Bentley, David L.; Brewer, Molly A.; Utzinger, Urs; Hoyer, Patricia B.; Barton, Jennifer K.

    2011-03-01

    Our goal is to use optical imaging to detect cancer development on the sub cellular scale. By determining the microscopic changes that precede ovarian cancer we hope to develop a minimally invasive screening test for high risk patients. A mouse ovarian cancer model has been developed by treating mice with 4-Vinylcyclohexene Diepoxide to induce ovarian failure and 7, 12-Dimethylbenz[a]anthracene (DMBA) to induce ovarian cancer. Using optical coherence tomography (OCT) and multiphoton microscopy (MPM) we have obtained co-registered en face images of sixty-seven mouse ovaries ex vivo and forty-two ovaries in vivo. Preliminary analysis indicates that OCT and MPM can visualize ovarian microstructure. During the next year we will be completing a long term survival study using post-menopausal mice that have been treated with DMBA to induce cancer and imaged in vivo at time points before and after treatment.

  19. Hybrid modeling of electrical and optical behavior in the heart

    NASA Astrophysics Data System (ADS)

    Roth, Bradley J.; Pertsov, Arkady M.

    2009-06-01

    Optical mapping of transmembrane potential using voltage-sensitive dyes has revolutionized cardiac electrophysiology by enabling the visualization of electrical excitation waves in the heart. However, the interpretation of the optical mapping data is complicated by the fact that the optical signal arises not just from the surface, but also from some depth into the heart wall. Here, we review modeling efforts, in which the diffusion of photons is incorporated into the computer simulations of cardiac electrical activity (“hybrid” modeling), with the goal of improving our understanding of optical signals. We discuss the major accomplishments of hybrid modeling which include: (i) the explanation of the optical action potential upstroke morphology and prediction of its dependence on the subsurface wave front angle, (ii) the unexpectedly low magnitudes of optically recorded surface potentials during electrical shocks, and (iii) the “depolarization” of the core of the spiral wave and odd dual-humped optical action potentials during reentrant activation. We critically examine current optical mapping techniques and controversies in our understanding of electroporation during defibrillation. Finally, we provide a brief overview of recent theoretical studies aimed at extending optical mapping techniques for imaging intramural excitation to include transillumination imaging of scroll wave filaments and depth-resolved optical tomographic methods.

  20. A model for testing centerfinding algorithms for automated optical navigation

    NASA Technical Reports Server (NTRS)

    Griffin, M. D.; Breckenridge, W. G.

    1979-01-01

    An efficient software simulation of the imaging process for optical navigation is presented, illustrating results using simple examples. The problems of image definition and optical system modeling, including ideal image containing features and realistic models of optical filtering performed by the entire camera system, are examined. A digital signal processing technique is applied to the problem of developing methods of automated optical navigation and the subsequent mathematical formulation is presented. Specific objectives such as an analysis of the effects of camera defocusing on centerfinding of planar targets, addition of noise filtering to the algorithm, and implementation of multiple frame capability were investigated.

  1. Stellar models with microscopic diffusion and rotational mixing. 2: Application to open clusters

    NASA Technical Reports Server (NTRS)

    Chaboyer, B.; Demarque, P.; Pinsonneault, M. H.

    1995-01-01

    Stellar models with masses ranging from 05.5 to 1.3 solar mass were constructed for comparison with young cluster observations of Li and of rotation velocities. The amount of Li depletion in cool stars is sensitive to the amount of overshoot at the base of the surface convection zone, and the exact metallicity of the models. Even when this is taken into account, the Li observations are a severe constraint for the models and rule out standard models and pure diffusion models. Stellar models which include diffusion and rotational mixing in the radiative regions of stars are able to simultaneously match the Li abundances observed in the Pleiades, the UMa Group, The Hyades, Praesepe, NGC 752, and M67. They also match the observed rotation periods in the Hyades. However, these models are unable to simultaneously explain the presence of the rapidly rotating late G and K stars in the Pleiades and the absence of rapidly rotating late F and early G stars.

  2. Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models

    PubMed Central

    2016-01-01

    The dynamics of short-lived mRNA results in bursts of protein production in gene regulatory networks. We investigate the propagation of bursting noise between different levels of mathematical modelling and demonstrate that conventional approaches based on diffusion approximations can fail to capture bursting noise. An alternative coarse-grained model, the so-called piecewise deterministic Markov process (PDMP), is seen to outperform the diffusion approximation in biologically relevant parameter regimes. We provide a systematic embedding of the PDMP model into the landscape of existing approaches, and we present analytical methods to calculate its stationary distribution and switching frequencies. PMID:26763330

  3. Theoretical investigation on the magnetic and electric properties in TbSb compound through an anisotropic microscopic model

    NASA Astrophysics Data System (ADS)

    von Ranke, P. J.; Ribeiro, P. O.; Carvalho, A. Magnus G.; Alho, B. P.; Alvarenga, T. S. T.; Nobrega, E. P.; Caldas, A.; de Sousa, V. S. R.; Lopes, P. H. O.; de Oliveira, N. A.

    2016-05-01

    We report the strong correlations between the magnetoresistivity and the magnetic entropy change in the cubic antiferromagnetic TbSb compound. The theoretical investigation was performed through a microscopic model which takes into account the crystalline electrical field anisotropy, exchange coupling interactions between the up and down magnetic sublattices, and the Zeeman interaction. The easy magnetization directions changes from ⟨001⟩ to ⟨110⟩ and then to ⟨111⟩ observed experimentally was successfully theoretically described. Also, the calculation of the temperature dependence of electric resistivity showed good agreement with the experimental data. Theoretical predictions were calculated for the temperature dependence of the magnetic entropy and resistivity changes upon magnetic field variation. Besides, the difference in the spin up and down sublattices resistivity was investigated.

  4. Nonanalytic microscopic phase transitions and temperature oscillations in the microcanonical ensemble: An exactly solvable one-dimensional model for evaporation

    NASA Astrophysics Data System (ADS)

    Hilbert, Stefan; Dunkel, Jörn

    2006-07-01

    We calculate exactly both the microcanonical and canonical thermodynamic functions (TDFs) for a one-dimensional model system with piecewise constant Lennard-Jones type pair interactions. In the case of an isolated N -particle system, the microcanonical TDFs exhibit (N-1) singular (nonanalytic) microscopic phase transitions of the formal order N/2 , separating N energetically different evaporation (dissociation) states. In a suitably designed evaporation experiment, these types of phase transitions should manifest themselves in the form of pressure and temperature oscillations, indicating cooling by evaporation. In the presence of a heat bath (thermostat), such oscillations are absent, but the canonical heat capacity shows a characteristic peak, indicating the temperature-induced dissociation of the one-dimensional chain. The distribution of complex zeros of the canonical partition may be used to identify different degrees of dissociation in the canonical ensemble.

  5. Interplay between the pairing and quadrupole interactions in the algebraic realization of the microscopic shell model

    NASA Astrophysics Data System (ADS)

    Drumev, Kalin; Georgieva, Ana

    2015-04-01

    We explore the algebraic realization of the Pairing-Plus-Quadrupole Model/PQM/ in the framework of the Elliott‘s SU(3) Model with the aim to obtain the complementary and competing features of the two interactions through the relation between the pairing and the SU(3) bases. First, we establish a correspondence between the SO(8) pairing basis and the Elliott's SU(3) basis. It is derived from their complementarity to the same LST coupling chain of the shell-model number-conserving algebra. The probability distribution of the SU(3) basis states within the SO(8) pairing states is also obtained and allows the investigation of the interplay between the pairing and quadrupole interactions in the Hamiltonian of the PQM, containing both of them as limiting cases. The description of some realistic N∼Z nuclear systems is investigated in a SU(3)-symmetry-adapted basis within a model space of one and two oscillator shells.

  6. Simulations of complex and microscopic models of cardiac electrophysiology powered by multi-GPU platforms.

    PubMed

    Gouvêa de Barros, Bruno; Sachetto Oliveira, Rafael; Meira, Wagner; Lobosco, Marcelo; Weber dos Santos, Rodrigo

    2012-01-01

    Key aspects of cardiac electrophysiology, such as slow conduction, conduction block, and saltatory effects have been the research topic of many studies since they are strongly related to cardiac arrhythmia, reentry, fibrillation, or defibrillation. However, to reproduce these phenomena the numerical models need to use subcellular discretization for the solution of the PDEs and nonuniform, heterogeneous tissue electric conductivity. Due to the high computational costs of simulations that reproduce the fine microstructure of cardiac tissue, previous studies have considered tissue experiments of small or moderate sizes and used simple cardiac cell models. In this paper, we develop a cardiac electrophysiology model that captures the microstructure of cardiac tissue by using a very fine spatial discretization (8 μm) and uses a very modern and complex cell model based on Markov chains for the characterization of ion channel's structure and dynamics. To cope with the computational challenges, the model was parallelized using a hybrid approach: cluster computing and GPGPUs (general-purpose computing on graphics processing units). Our parallel implementation of this model using a multi-GPU platform was able to reduce the execution times of the simulations from more than 6 days (on a single processor) to 21 minutes (on a small 8-node cluster equipped with 16 GPUs, i.e., 2 GPUs per node). PMID:23227109

  7. Femtosecond scanning tunneling microscope

    SciTech Connect

    Taylor, A.J.; Donati, G.P.; Rodriguez, G.; Gosnell, T.R.; Trugman, S.A.; Some, D.I.

    1998-11-01

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). By combining scanning tunneling microscopy with ultrafast optical techniques we have developed a novel tool to probe phenomena on atomic time and length scales. We have built and characterized an ultrafast scanning tunneling microscope in terms of temporal resolution, sensitivity and dynamic range. Using a novel photoconductive low-temperature-grown GaAs tip, we have achieved a temporal resolution of 1.5 picoseconds and a spatial resolution of 10 nanometers. This scanning tunneling microscope has both cryogenic and ultra-high vacuum capabilities, enabling the study of a wide range of important scientific problems.

  8. Ion photon emission microscope

    DOEpatents

    Doyle, Barney L.

    2003-04-22

    An ion beam analysis system that creates microscopic multidimensional image maps of the effects of high energy ions from an unfocussed source upon a sample by correlating the exact entry point of an ion into a sample by projection imaging of the ion-induced photons emitted at that point with a signal from a detector that measures the interaction of that ion within the sample. The emitted photons are collected in the lens system of a conventional optical microscope, and projected on the image plane of a high resolution single photon position sensitive detector. Position signals from this photon detector are then correlated in time with electrical effects, including the malfunction of digital circuits, detected within the sample that were caused by the individual ion that created these photons initially.

  9. Acoustic imaging microscope

    DOEpatents

    Deason, Vance A.; Telschow, Kenneth L.

    2006-10-17

    An imaging system includes: an object wavefront source and an optical microscope objective all positioned to direct an object wavefront onto an area of a vibrating subject surface encompassed by a field of view of the microscope objective, and to direct a modulated object wavefront reflected from the encompassed surface area through a photorefractive material; and a reference wavefront source and at least one phase modulator all positioned to direct a reference wavefront through the phase modulator and to direct a modulated reference wavefront from the phase modulator through the photorefractive material to interfere with the modulated object wavefront. The photorefractive material has a composition and a position such that interference of the modulated object wavefront and modulated reference wavefront occurs within the photorefractive material, providing a full-field, real-time image signal of the encompassed surface area.

  10. Quantification of Optical and Physical Properties of Combustion-Generated Carbonaceous Aerosols (Microscopic Techniques

    PubMed Central

    Perera, Inoka Eranda; Litton, Charles D.

    2016-01-01

    A series of experiments were conducted to quantify and characterize the optical and physical properties of combustion-generated aerosols during both flaming and smoldering combustion of three materials common to underground mines—Pittsburgh Seam coal, Styrene Butadiene Rubber (a common mine conveyor belt material), and Douglas-fir wood—using a combination of analytical and gravimetric measurements. Laser photometers were utilized in the experiments for continuous measurement of aerosol mass concentrations and for comparison to measurements made using gravimetric filter samples. The aerosols of interest lie in the size range of tens to a few hundred nanometers, out of range of the standard photometer calibration. To correct for these uncertainties, the photometer mass concentrations were compared to gravimetric samples to determine if consistent correlations existed. The response of a calibrated and modified combination ionization/photoelectric smoke detector was also used. In addition, the responses of this sensor and a similar, prototype ionization/photoelectric sensor, along with discrete angular scattering, total scattering, and total extinction measurements, were used to define in real time the size, morphology, and radiative transfer properties of these differing aerosols that are generally in the form of fractal aggregates. SEM/TEM images were also obtained in order to compare qualitatively the real-time, continuous experimental measurements with the visual microscopic measurements. These data clearly show that significant differences exist between aerosols from flaming and from smoldering combustion and that these differences produce very different scattering and absorption signatures. The data also indicate that ionization/photoelectric sensors can be utilized to measure continuously and in real time aerosol properties over a broad spectrum of applications related to adverse environmental and health effects.

  11. Macroscopic and microscopic defects and nonlinear optical properties of KH{sub 2}PO{sub 4} crystals with embedded TiO{sub 2} nanoparticles

    SciTech Connect

    Grachev, Valentin G.; Vrable, Ian A.; Malovichko, Galina I.; Pritula, Igor M.; Bezkrovnaya, Olga N.; Kosinova, Anna V.; Yatsyna, Vasyl O.; Gayvoronsky, Vladimir Ya.

    2012-07-01

    Results from the successful growth of high quality KH{sub 2}PO{sub 4} (KDP) crystals with incorporated TiO{sub 2} anatase nanoparticles and the characterization of these crystals using several complementary methods are presented. The study allowed the nature and distribution of macroscopic and microscopic defects in the KDP:TiO{sub 2} crystals to be clarified. The relationship between these defects and the distribution of TiO{sub 2} nanoparticles, and the influence of incorporated nanoparticles on the nonlinear optical properties of composite crystals in comparison with pure crystals were also elucidated. Visual observations, transmission and scanning electron microscopy have shown that the anatase nanoparticles were captured mainly by the pyramidal growth sector and, to a considerably lesser extent, by the prismatic growth sector. Energy dispersive x-ray analysis was able to confirm that the growth layer stacks contain the TiO{sub 2} particles. Fourier transformation infrared spectra have clearly shown the presence of an absorption band at about 800 cm{sup -1} in both KDP:TiO{sub 2} and TiO{sub 2}, and the disappearance of the band, associated with hydroxyl OH{sup -} groups on the TiO{sub 2} surface in KDP:TiO{sub 2}. Significant variation in the imaginary and real parts of the cubic nonlinear optical susceptibilities and refractive index changes at continuous wave excitation were found in prism and pyramid parts of pure KDP and KDP:TiO{sub 2} samples. Deciphering complicated electron paramagnetic resonance spectra in KDP:TiO{sub 2} and comparison with published data permitted the identification of paramagnetic defects along with their associated g-factors and zero-field splitting parameters (in some cases for the first time). It was found that the dominant lines belong to four different centers Fe{sub A}{sup 3+}, Fe{sub B}{sup 3+}, Cr{sub R}{sup 3+}, and Cr{sub GB}{sup 3+}. From analysis of line intensities it was concluded that the concentration of intrinsic

  12. Cluster statistics and quasisoliton dynamics in microscopic optimal-velocity models

    NASA Astrophysics Data System (ADS)

    Yang, Bo; Xu, Xihua; Pang, John Z. F.; Monterola, Christopher

    2016-04-01

    Using the non-linear optimal velocity models as an example, we show that there exists an emergent intrinsic scale that characterizes the interaction strength between multiple clusters appearing in the solutions of such models. The interaction characterizes the dynamics of the localized quasisoliton structures given by the time derivative of the headways, and the intrinsic scale is analogous to the "charge" of the quasisolitons, leading to non-trivial cluster statistics from the random perturbations to the initial steady states of uniform headways. The cluster statistics depend both on the quasisoliton charge and the density of the traffic. The intrinsic scale is also related to an emergent quantity that gives the extremum headways in the cluster formation, as well as the coexistence curve separating the absolute stable phase from the metastable phase. The relationship is qualitatively universal for general optimal velocity models.

  13. MRI Slice Segmentation and 3D Modelling of Temporomandibular Joint Measured by Microscopic Coil

    NASA Astrophysics Data System (ADS)

    Smirg, O.; Liberda, O.; Smekal, Z.; Sprlakova-Pukova, A.

    2012-01-01

    The paper focuses on the segmentation of magnetic resonance imaging (MRI) slices and 3D modelling of the temporomandibular joint disc in order to help physicians diagnose patients with dysfunction of the temporomandibular joint (TMJ). The TMJ is one of the most complex joints in the human body. The most common joint dysfunction is due to the disc. The disc is a soft tissue, which in principle cannot be diagnosed by the CT method. Therefore, a 3D model is made from the MRI slices, which can image soft tissues. For the segmentation of the disc in individual slices a new method is developed based on spatial distribution and anatomical TMJ structure with automatic thresholding. The thresholding is controlled by a genetic algorithm. The 3D model is realized using the marching cube method.

  14. Optical modeling in Testbed Environment for Space Situational Awareness (TESSA).

    PubMed

    Nikolaev, Sergei

    2011-08-01

    We describe optical systems modeling in the Testbed Environment for Space Situational Awareness (TESSA) simulator. We begin by presenting a brief outline of the overall TESSA architecture and focus on components for modeling optical sensors. Both image generation and image processing stages are described in detail, highlighting the differences in modeling ground- and space-based sensors. We conclude by outlining the applicability domains for the TESSA simulator, including potential real-life scenarios. PMID:21833092

  15. Microscopic plasma Hamiltonian

    NASA Technical Reports Server (NTRS)

    Peng, Y.-K. M.

    1974-01-01

    A Hamiltonian for the microscopic plasma model is derived from the Low Lagrangian after the dual roles of the generalized variables are taken into account. The resulting Hamilton equations are shown to agree with the Euler-Lagrange equations of the Low Lagrangian.

  16. A microscopic two-band model for the electron-hole asymmetry in high-Tc superconductors and reentering behavior

    NASA Astrophysics Data System (ADS)

    Bru, J.-B.; Pedra, W. de Siqueira; Dömel, A.-S.

    2011-07-01

    To our knowledge there is no rigorously analyzed microscopic model explaining the electron-hole asymmetry of the critical temperature seen in high-Tc cuprate superconductors - at least no model not breaking artificially this symmetry. We present here a microscopic two-band model based on the structure of energetic levels of holes in CuO2 conducting layers of cuprates. In particular, our Hamiltonian does not contain ad hoc terms implying - explicitly - different masses for electrons and holes. We prove that two energetically near-lying interacting bands can explain the electron-hole asymmetry. Indeed, we rigorously analyze the phase diagram of the model and show that the critical temperatures for fermion densities below half-filling can manifest a very different behavior as compared to the case of densities above half-filling. This fact results from the inter-band interaction and intra-band Coulomb repulsion in interplay with thermal fluctuations between two energetic levels. So, if the energy difference between bands is too big (as compared to the energy scale defined by the critical temperatures of superconductivity) then the asymmetry disappears. Moreover, the critical temperature turns out to be a non-monotonic function of the fermion density and the phase diagram of our model shows "superconducting domes" as in high-Tc cuprate superconductors. This explains why the maximal critical temperature is attained at donor densities away from the maximal one. Outside the superconducting phase and for fermion densities near half-filling the thermodynamics governed by our Hamiltonian corresponds, as in real high-Tc materials, to a Mott-insulating phase. The nature of the inter-band interaction can be electrostatic (screened Coulomb interaction), magnetic (for instance, some Heisenberg-type one-site spin-spin interaction), or a mixture of both. If the inter-band interaction is predominately magnetic then - additionally to the electron-hole asymmetry - we observe a

  17. Microscopic model for intersubband gain from electrically pumped quantum-dot structures

    DOE PAGESBeta

    Michael, Stephan; Chow, Weng Wah; Schneider, Han Christian

    2014-10-03

    We study theoretically the performance of electrically pumped self-organized quantum dots as a gain material in the mid-infrared range at room temperature. We analyze an AlGaAs/InGaAs based structure composed of dots-in-a-well sandwiched between two quantum wells. We numerically analyze a comprehensive model by combining a many-particle approach for electronic dynamics with a realistic modeling of the electronic states in the whole structure. We investigate the gain both for quasi-equilibrium conditions and current injection. We find, comparing different structures, that steady-state gain can only be realized by an efficient extraction process, which prevents an accumulation of electrons in continuum states, thatmore » make the available scattering pathways through the quantum-dot active region too fast to sustain inversion.« less

  18. Multi-particle FEM modeling on microscopic behavior of 2D particle compaction

    NASA Astrophysics Data System (ADS)

    Zhang, Y. X.; An, X. Z.; Zhang, Y. L.

    2015-03-01

    In this paper, the discrete random packing and various ordered packings such as tetragonal and hexagonal close packed structures generated by discrete element method and honeycomb, which is manually generated were input as the initial packing structures into the multi-particle finite element model (FEM) to study their densification during compaction, where each particle is discretized as a FEM mesh. The macro-property such as relative density and micro-properties such as local morphology, stress, coordination number and densification mechanism obtained from various initial packings are characterized and analyzed. The results show that the coupling of discrete feature in particle scale with the continuous FEM in macro-scale can effectively conquer the difficulties in traditional FEM modeling, which provides a reasonable way to reproduce the compaction process and identify the densification mechanism more accurately and realistically.

  19. Microscopic model for intersubband gain from electrically pumped quantum-dot structures

    SciTech Connect

    Michael, Stephan; Chow, Weng Wah; Schneider, Han Christian

    2014-10-03

    We study theoretically the performance of electrically pumped self-organized quantum dots as a gain material in the mid-infrared range at room temperature. We analyze an AlGaAs/InGaAs based structure composed of dots-in-a-well sandwiched between two quantum wells. We numerically analyze a comprehensive model by combining a many-particle approach for electronic dynamics with a realistic modeling of the electronic states in the whole structure. We investigate the gain both for quasi-equilibrium conditions and current injection. We find, comparing different structures, that steady-state gain can only be realized by an efficient extraction process, which prevents an accumulation of electrons in continuum states, that make the available scattering pathways through the quantum-dot active region too fast to sustain inversion.

  20. Microscopic Car-Following Models Revisited: From Road Works to Fundamental Diagrams

    NASA Astrophysics Data System (ADS)

    Seidel, T.; Gasser, I.; Werner, B.

    2009-01-01

    We analyze the dynamics of the classical optimal velocity model for the case of road works. We introduce a new viewpoint, the so-called rotation solutions, which in case of an additional symmetry leads to Ponies-on-a-Merry-Go-Round-solutions (POMs) [D. G. Aronson, M. Golubitsky, and J. Mallet-Paret, Nonlinearity, 4 (1991), p. 903]. This approach, which is also useful for the case without road works, opens the possibility of analytical and numerical bifurcation studies, which show a wide variety in the possible dynamics of this very simple model. In addition, we mimic different measurement approaches and recover the famous inverse Greek lambda structure in the fundamental diagram.