Science.gov

Sample records for multiple temporal levels

  1. Temporal stability of multiple-cell vortices

    NASA Technical Reports Server (NTRS)

    Khorrami, M. R.; Grosch, C. E.

    1989-01-01

    The temporal stability of multiple cell vortices is studied with a staggered Chebyshev spectral collocation technique. It is shown that cell multiplicity in the vortex core has a drastic effect on the stability characteristics. While validating the spectral collocation algorithm, two new viscous modes of instability for Batchelor's (1964) vortex were found. These modes are discussed in detail.

  2. Spatio-temporal registration of multiple trajectories.

    PubMed

    Padoy, Nicolas; Hager, Gregory D

    2011-01-01

    A growing number of medical datasets now contain both a spatial and a temporal dimension. Trajectories, from tools or body features, are thus becoming increasingly important for their analysis. In this paper, we are interested in recovering the spatial and temporal differences between trajectories coming from different datasets. In particular, we address the case of surgical gestures, where trajectories contain both spatial transformations and speed differences in the execution. We first define the spatio-temporal registration problem between multiple trajectories. We then propose an optimization method to jointly recover both the rigid spatial motions and the non-linear time warpings. The optimization generates also a generic trajectory template, in which spatial and temporal differences have been factored out. This approach can be potentially used to register and compare gestures side-by-side for training sessions, to build gesture trajectory models for automation by a robot, or to register the trajectories of natural or artificial markers which follow similar motions. We demonstrate its usefulness with synthetic and real experiments. In particular, we register and analyze complex surgical gestures performed by tele-manipulation using the da Vinci robot. PMID:22003611

  3. The Temporal Dynamics of Visual Processing in Multiple Sclerosis.

    PubMed

    Lopes Costa, Silvana; Gonçalves, Oscar F; DeLuca, John; Chiaravalloti, Nancy; Chakravarthi, Ramakrishna; Almeida, Jorge

    2016-01-01

    Although the integrity of the visual system is often affected in multiple sclerosis (MS), the potential relationship between the temporal dynamics of visual processing and performance on neuropsychological tests assessing processing speed (PS) remains relatively unexplored. Here, we test if a PS deficit is related to abnormalities within the visual system, rather than impaired higher-level cognitive function. Two groups of participants with MS (1 group with PS deficits and another without) and a healthy control group, matched for age and education, were included. To explore the temporal dynamics of visual processing, we used 2 psychophysical paradigms: attention enhancement/prioritization and rapid serial visual presentation. Visual PS deficits were associated with a decreased capability to detect visual stimuli and a higher limitation in visual temporal-processing capacity. These results suggest that a latent sensorial temporal limitation of the visual system is significantly associated to PS deficits in MS. PMID:26508328

  4. Temporal lobe lesions and psychosis in multiple sclerosis

    PubMed Central

    Yadav, R; Zigmond, A S

    2010-01-01

    Lesions in the temporal lobe are associated with psychiatric manifestations in multiple sclerosis. The authors describe this case of a young man with multiple sclerosis who presented with first-episode psychosis and had acute lesions in the temporal lobe. He was successfully treated with olanzapine and β-interferon. PMID:22789690

  5. Relative Priming of Temporal Local-Global Levels in Auditory Hierarchical Stimuli

    PubMed Central

    List, Alexandra; Justus, Timothy

    2009-01-01

    Priming is a useful tool for ascertaining the circumstances under which previous experiences influence behavior. Previously, using hierarchical stimuli, we demonstrated that selectively attending to one temporal scale of an auditory stimulus improved subsequent attention to a repeated (vs. changed) temporal scale, i.e., we demonstrated inter-trial auditory temporal level-priming. Here, we have extended those results to address whether level-priming relied on absolute or relative temporal information. Both relative and absolute temporal information are important in auditory perception: speech and music can be recognized over various temporal scales, but become uninterpretable to a listener when presented too quickly or slowly. We first confirmed that temporal level-priming generalized over new temporal scales. Second, in the context of multiple temporal scales, we found that temporal level-priming operates predominantly on the basis of relative, rather than absolute, temporal information. These findings are discussed in the context of expectancies and relational invariance in audition. PMID:20045889

  6. Temporal weighting functions for interaural time and level differences. III. Temporal weighting for lateral position judgments

    PubMed Central

    Stecker, G. Christopher; Ostreicher, Jennifer D.; Brown, Andrew D.

    2013-01-01

    Temporal variation in listeners' sensitivity to interaural time and level differences (ITD and ILD) was assessed using the temporal weighting function (TWF) paradigm [Stecker and Hafter (2002). J. Acoust. Soc. Am. 112, 1046–1057] in the context of sound-source lateralization. Brief Gabor click trains were presented over headphones with overall ITD and/or ILD ranging ±500 μs ITD and/or ±5 dB ILD across trials; values for individual clicks within each train varied by an additional ±100 μs or ±2 dB to allow TWF calculation by multiple regression. In separate conditions, TWFs were measured for (i) ITD alone, (ii) ILD alone, (iii) ITD and ILD covarying (“in agreement”), and (iv) ITD and ILD varying independently across clicks. Consistent with past studies that measured TWF for binaural discrimination, TWFs demonstrated high weight on the first click for stimuli with short interclick interval (ICI = 2 ms), but flatter weighting for longer ICI (5–10 ms). Some conditions additionally demonstrated greater weight for clicks near the offset than near the middle of the train [Stecker and Hafter (2009). J. Acoust. Soc. Am. 125, 3914–3924]. The latter result was observed only when stimuli carried ILD, and appeared more reliably for 5 ms than for 2 or 10 ms ICI. PMID:23927122

  7. A study of the temporal stability of multiple cell vortices

    NASA Technical Reports Server (NTRS)

    Khorrami, Mehdi R.

    1989-01-01

    The effect of initial mean velocity field on the stability characteristics of longitudinal vortices is documented in detail. The temporal stability of isolated multiple cell vortices is considered. The types of vortices studied include single cell as well as two and three cell vortices. It is shown that cell multiplicity in the vortex core has drastic effects on the stability characteristics. On the basis of numerical calculations, it is concluded that the growth rates of instabilities in multiple cell vortices are substantially larger (two to threefold increases are observed) than those of a single cell vortex. It is also determined that there is a substantial increase in the effective range of axial and azimuthal wavenumbers where instabilities are present. But most importantly, there is the appearance of a variety of viscous modes of instability. In the case of vortices, these latter instabilities which highlight the importance of viscous forces have never been reported before. These effects are discussed in detail for the case of a two cell vortex.

  8. Pattern-level temporal difference learning, data fusion, and chess

    NASA Astrophysics Data System (ADS)

    Levinson, Robert; Weber, Ryan J.

    2000-04-01

    Our research group is using chess as a vehicle for studying the fusion of adaptation, multiple representation, and search technologies for real-time decision making. Chess systems like Deep Blue have achieved Grandmaster chess play with a brute-force search of the game tree and human- supplied information, like piece-values and opening books. However, subtle aspects of chess, including positional features and advanced concepts, are not capable of being represented or processed efficiently with the standard method. Since 1989, Morph I-III have exhibited more autonomy and learning ability than traditional chess programs in `adaptive pattern-oriented chess'. Like its predecessors, Morph IV is a reinforcement learner, but it also uses a new technique we call pattern-level TD and Q-learning to mathematically map the state space and effectively learn to classify situations. Its three knowledge sources include two traditional ones: material and a piece-square table, and a new method called Distance. These are combined using a simple genetic algorithm and a decision tree. This paper shows the effectiveness of fusing knowledge to replace search in real-time situations, since an agent which combines all sources is capable of consistently beating an agent which employs any of the individual knowledge sources. Surprisingly, the pattern-level TD agent is slightly superior to the pattern-level Q-learning agent, despite the fact that the Q-learning agent updates more Q-values on each temporal step.

  9. Estimation of dynamic functional connectivity using Multiplication of Temporal Derivatives.

    PubMed

    Shine, James M; Koyejo, Oluwasanmi; Bell, Peter T; Gorgolewski, Krzysztof J; Gilat, Moran; Poldrack, Russell A

    2015-11-15

    Functional connectivity provides an informative and powerful framework for exploring brain organization. Despite this, few statistical methods are available for the accurate estimation of dynamic changes in functional network architecture. To date, the majority of existing statistical techniques have assumed that connectivity structure is stationary, which is in direct contrast to emerging data that suggests that the strength of connectivity between regions is variable over time. Therefore, the development of statistical methods that enable exploration of dynamic changes in functional connectivity is currently of great importance to the neuroscience community. In this paper, we introduce the 'Multiplication of Temporal Derivatives' (MTD) and then demonstrate the utility of this metric to: (i) detect dynamic changes in connectivity using data from a novel state-switching simulation; (ii) accurately estimate graph structure in a previously-described 'ground-truth' simulated dataset; and (iii) identify task-driven alterations in functional connectivity. We show that the MTD is more sensitive than existing sliding-window methods in detecting dynamic alterations in connectivity structure across a range of correlation strengths and window lengths in simulated data. In addition to the temporal precision offered by MTD, we demonstrate that the metric is also able to accurately estimate stationary network structure in both simulated and real task-based data, suggesting that the method may be used to identify dynamic changes in network structure as they evolve through time. PMID:26231247

  10. An interval logic for higher-level temporal reasoning

    NASA Technical Reports Server (NTRS)

    Schwartz, R. L.; Melliar-Smith, P. M.; Vogt, F. H.; Plaisted, D. A.

    1983-01-01

    Prior work explored temporal logics, based on classical modal logics, as a framework for specifying and reasoning about concurrent programs, distributed systems, and communications protocols, and reported on efforts using temporal reasoning primitives to express very high level abstract requirements that a program or system is to satisfy. Based on experience with those primitives, this report describes an Interval Logic that is more suitable for expressing such higher level temporal properties. The report provides a formal semantics for the Interval Logic, and several examples of its use. A description of decision procedures for the logic is also included.

  11. Temporal scaling behavior of sea-level change in Hong Kong - Multifractal temporally weighted detrended fluctuation analysis

    NASA Astrophysics Data System (ADS)

    Zhang, Yuanzhi; Ge, Erjia

    2013-01-01

    The rise in global sea levels has been recognized by many scientists as an important global research issue. The process of sea-level change has demonstrated a complex scaling behavior in space and time. Large numbers of tide gauge stations have been built to measure sea-level change in the North Pacific Ocean, Indian Ocean, North Atlantic Ocean, and Antarctic Ocean. Extensive studies have been devoted to exploring sea-level variation in Asia concerning the Bohai Gulf (China), the Yellow Sea (China), the Mekong Delta (Thailand), and Singapore. Hong Kong, however, a mega city with a population of over 7 million situated in the mouth of the Pear River Estuary in the west and the South China Sea in the east, has yet to be studied, particularly in terms of the temporal scaling behavior of sea-level change. This article presents an approach to studying the temporal scaling behavior of sea-level change over multiple time scales by analyzing the time series of sea-level change in Tai Po Kou, Tsim Bei Tsui, and Quarry Bay from the periods of 1964-2010, 1974-2010, and 1986-2010, respectively. The detection of long-range correlation and multi-fractality of sea-level change seeks answers to the following questions: (1) Is the current sea-level rise associated with and responsible for the next rise over time? (2) Does the sea-level rise have specific temporal patterns manifested by multi-scaling behaviors? and (3) Is the sea-level rise is temporally heterogeneous in the different parts of Hong Kong? Multi-fractal temporally weighted de-trended fluctuation analysis (MF-TWDFA), an extension of multi-fractal de-trended fluctuation analysis (MF-DFA), has been applied in this study to identify long-range correlation and multi-scaling behavior of the sea-level rise in Hong Kong. The experimental results show that the sea-level rise is long-range correlated and multi-fractal. The temporal patterns are heterogeneous over space. This finding implies that mechanisms associated with the

  12. Influence of Temporal Context on Value in the Multiple-Chains and Successive-Encounters Procedures

    ERIC Educational Resources Information Center

    O'Daly, Matthew; Angulo, Samuel; Gipson, Cassandra; Fantino, Edmund

    2006-01-01

    This set of studies explored the influence of temporal context across multiple-chain and multiple-successive-encounters procedures. Following training with different temporal contexts, the value of stimuli sharing similar reinforcement schedules was assessed by presenting these stimuli in concurrent probes. The results for the multiple-chain…

  13. The temporal structure of pollution levels in developed cities.

    PubMed

    Barrigón Morillas, Juan Miguel; Ortiz-Caraballo, Carmen; Prieto Gajardo, Carlos

    2015-06-01

    Currently, the need for mobility can cause significant pollution levels in cities, with important effects on health and quality of life. Any approach to the study of urban pollution and its effects requires an analysis of spatial distribution and temporal variability. It is a crucial dilemma to obtain proven methodologies that allow an increase in the quality of the prediction and the saving of resources in the spatial and temporal sampling. This work proposes a new analytical methodology in the study of temporal structure. As a result, a model for estimating annual levels of urban traffic noise was proposed. The average errors are less than one decibel in all acoustics indicators. A new working methodology of urban noise has begun. Additionally, a general application can be found for the study of the impacts of pollution associated with traffic, with implications for urban design and possibly in economic and sociological aspects. PMID:25710623

  14. TEMPORAL CHANGE IN FOREST FRAGMENTATION AT MULTIPLE SCALES

    EPA Science Inventory

    Previous studies of temporal changes in fragmentation have focused almost exclusively on patch and edge statistics, which might not detect changes in the spatial scale at which forest occurs in or dominates the landscape. We used temporal land-cover data for the Chesapeake Bay r...

  15. Decoding multiple sound categories in the human temporal cortex using high resolution fMRI.

    PubMed

    Zhang, Fengqing; Wang, Ji-Ping; Kim, Jieun; Parrish, Todd; Wong, Patrick C M

    2015-01-01

    Perception of sound categories is an important aspect of auditory perception. The extent to which the brain's representation of sound categories is encoded in specialized subregions or distributed across the auditory cortex remains unclear. Recent studies using multivariate pattern analysis (MVPA) of brain activations have provided important insights into how the brain decodes perceptual information. In the large existing literature on brain decoding using MVPA methods, relatively few studies have been conducted on multi-class categorization in the auditory domain. Here, we investigated the representation and processing of auditory categories within the human temporal cortex using high resolution fMRI and MVPA methods. More importantly, we considered decoding multiple sound categories simultaneously through multi-class support vector machine-recursive feature elimination (MSVM-RFE) as our MVPA tool. Results show that for all classifications the model MSVM-RFE was able to learn the functional relation between the multiple sound categories and the corresponding evoked spatial patterns and classify the unlabeled sound-evoked patterns significantly above chance. This indicates the feasibility of decoding multiple sound categories not only within but across subjects. However, the across-subject variation affects classification performance more than the within-subject variation, as the across-subject analysis has significantly lower classification accuracies. Sound category-selective brain maps were identified based on multi-class classification and revealed distributed patterns of brain activity in the superior temporal gyrus and the middle temporal gyrus. This is in accordance with previous studies, indicating that information in the spatially distributed patterns may reflect a more abstract perceptual level of representation of sound categories. Further, we show that the across-subject classification performance can be significantly improved by averaging the f

  16. Decoding Multiple Sound Categories in the Human Temporal Cortex Using High Resolution fMRI

    PubMed Central

    Zhang, Fengqing; Wang, Ji-Ping; Kim, Jieun; Parrish, Todd; Wong, Patrick C. M.

    2015-01-01

    Perception of sound categories is an important aspect of auditory perception. The extent to which the brain’s representation of sound categories is encoded in specialized subregions or distributed across the auditory cortex remains unclear. Recent studies using multivariate pattern analysis (MVPA) of brain activations have provided important insights into how the brain decodes perceptual information. In the large existing literature on brain decoding using MVPA methods, relatively few studies have been conducted on multi-class categorization in the auditory domain. Here, we investigated the representation and processing of auditory categories within the human temporal cortex using high resolution fMRI and MVPA methods. More importantly, we considered decoding multiple sound categories simultaneously through multi-class support vector machine-recursive feature elimination (MSVM-RFE) as our MVPA tool. Results show that for all classifications the model MSVM-RFE was able to learn the functional relation between the multiple sound categories and the corresponding evoked spatial patterns and classify the unlabeled sound-evoked patterns significantly above chance. This indicates the feasibility of decoding multiple sound categories not only within but across subjects. However, the across-subject variation affects classification performance more than the within-subject variation, as the across-subject analysis has significantly lower classification accuracies. Sound category-selective brain maps were identified based on multi-class classification and revealed distributed patterns of brain activity in the superior temporal gyrus and the middle temporal gyrus. This is in accordance with previous studies, indicating that information in the spatially distributed patterns may reflect a more abstract perceptual level of representation of sound categories. Further, we show that the across-subject classification performance can be significantly improved by averaging the f

  17. Multiple soliton self-frequency shift cancellations in a temporally tailored photonic crystal fiber

    SciTech Connect

    Liu, Lai; Kang, Zhe; Li, Qing; Gao, Xuejian; Qin, Guanshi E-mail: wpqin@jlu.edu.cn; Qin, Weiping E-mail: wpqin@jlu.edu.cn; Liao, Meisong; Hu, Lili; Ohishi, Yasutake

    2014-11-03

    We report the generation of multiple soliton self-frequency shift cancellations in a temporally tailored tellurite photonic crystal fiber (PCF). The temporally regulated group velocity dispersion (GVD) is generated in the fiber by soliton induced optical Kerr effect. Two red-shifted dispersive waves spring up when two Raman solitons meet their own second zero-dispersion-wavelengths in the PCF. These results show how, through temporally tailored GVD, nonlinearities can be harnessed to generate unexpected effects.

  18. Spatial and Temporal Dynamics of Pacific Oyster Hemolymph Microbiota across Multiple Scales

    PubMed Central

    Lokmer, Ana; Goedknegt, M. Anouk; Thieltges, David W.; Fiorentino, Dario; Kuenzel, Sven; Baines, John F.; Wegner, K. Mathias

    2016-01-01

    Unveiling the factors and processes that shape the dynamics of host associated microbial communities (microbiota) under natural conditions is an important part of understanding and predicting an organism's response to a changing environment. The microbiota is shaped by host (i.e., genetic) factors as well as by the biotic and abiotic environment. Studying natural variation of microbial community composition in multiple host genetic backgrounds across spatial as well as temporal scales represents a means to untangle this complex interplay. Here, we combined a spatially-stratified with a longitudinal sampling scheme within differentiated host genetic backgrounds by reciprocally transplanting Pacific oysters between two sites in the Wadden Sea (Sylt and Texel). To further differentiate contingent site from host genetic effects, we repeatedly sampled the same individuals over a summer season to examine structure, diversity and dynamics of individual hemolymph microbiota following experimental removal of resident microbiota by antibiotic treatment. While a large proportion of microbiome variation could be attributed to immediate environmental conditions, we observed persistent effects of antibiotic treatment and translocation suggesting that hemolymph microbial community dynamics is subject to within-microbiome interactions and host population specific factors. In addition, the analysis of spatial variation revealed that the within-site microenvironmental heterogeneity resulted in high small-scale variability, as opposed to large-scale (between-site) stability. Similarly, considerable within-individual temporal variability was in contrast with the overall temporal stability at the site level. Overall, our longitudinal, spatially-stratified sampling design revealed that variation in hemolymph microbiota is strongly influenced by site and immediate environmental conditions, whereas internal microbiome dynamics and oyster-related factors add to their long-term stability

  19. Multiple dipole modeling of spatio-temporal MEG (magnetoencephalogram) data

    SciTech Connect

    Mosher, J.C. . Systems Engineering and Development Div. University of Southern California, Los Angeles, CA . Signal and Image Processing Inst.); Lewis, P.S. ); Leahy, R. . Signal and Image Processing Inst.); Singh, M. (University of Southern Californi

    1990-01-01

    An array of SQUID biomagentometers may be used to measure the spatio-temporal neuromagnetic field produced by the brain in response to a given sensory stimulus. A popular model for the neural activity that produces these fields is a set of current dipoles. We present here a common linear algebraic framework for three common spatio-temporal dipole models: moving and rotating dipoles, rotating dipoles with fixed location, and dipoles with fixed orientation and location. Our intent here is not to argue the merits of one model over another, but rather show how each model may be solved efficiently, and within the same framework as the others. In all cases, we assume that the location, orientation, and magnitude of the dipoles are unknown. We present the parameter estimation problem for these three models in a common framework, and show how, in each case, the problem may be decomposed into the estimation of the dipole locations using nonlinear minimization followed by linear estimation of the associated moment time series. Numerically efficient means of calculating the cost function are presented, and problems of model order selection and missing moments are also investigated. The methods described are demonstrated in a simulated application to a three dipole problem. 21 refs., 2 figs., 1 tab.

  20. A Relational Encoding of a Conceptual Model with Multiple Temporal Dimensions

    NASA Astrophysics Data System (ADS)

    Gubiani, Donatella; Montanari, Angelo

    The theoretical interest and the practical relevance of a systematic treatment of multiple temporal dimensions is widely recognized in the database and information system communities. Nevertheless, most relational databases have no temporal support at all. A few of them provide a limited support, in terms of temporal data types and predicates, constructors, and functions for the management of time values (borrowed from the SQL standard). One (resp., two) temporal dimensions are supported by historical and transaction-time (resp., bitemporal) databases only. In this paper, we provide a relational encoding of a conceptual model featuring four temporal dimensions, namely, the classical valid and transaction times, plus the event and availability times. We focus our attention on the distinctive technical features of the proposed temporal extension of the relation model. In the last part of the paper, we briefly show how to implement it in a standard DBMS.

  1. Cellular superresolved imaging of multiple markers using temporally flickering nanoparticles

    PubMed Central

    Ilovitsh, Tali; Danan, Yossef; Meir, Rinat; Meiri, Amihai; Zalevsky, Zeev

    2015-01-01

    In this paper we present a technique aimed for simultaneous detection of multiple types of gold nanoparticles (GNPs) within a biological sample, using lock-in detection. We image the sample using a number of modulated laser beams that correspond to the number of GNP species that label a given sample. The final image where the GNPs are spatially separated is obtained computationally. The proposed method enables the simultaneous superresolved imaging of different areas of interest within biological sample and also the spatial separation of GNPs at sub-diffraction distances, making it a useful tool in the study of intracellular trafficking pathways in living cells. PMID:26020693

  2. Temporal variations in Global Seismic Stations ambient noise power levels

    USGS Publications Warehouse

    Ringler, A.T.; Gee, L.S.; Hutt, C.R.; McNamara, D.E.

    2010-01-01

    Recent concerns about time-dependent response changes in broadband seismometers have motivated the need for methods to monitor sensor health at Global Seismographic Network (GSN) stations. We present two new methods for monitoring temporal changes in data quality and instrument response transfer functions that are independent of Earth seismic velocity and attenuation models by comparing power levels against different baseline values. Our methods can resolve changes in both horizontal and vertical components in a broad range of periods (∼0.05 to 1,000 seconds) in near real time. In this report, we compare our methods with existing techniques and demonstrate how to resolve instrument response changes in long-period data (>100 seconds) as well as in the microseism bands (5 to 20 seconds).

  3. Temporal laser pulse manipulation using multiple optical ring-cavities

    NASA Technical Reports Server (NTRS)

    Nguyen, Quang-Viet (Inventor); Kojima, Jun (Inventor)

    2010-01-01

    An optical pulse stretcher and a mathematical algorithm for the detailed calculation of its design and performance is disclosed. The optical pulse stretcher has a plurality of optical cavities, having multiple optical reflectors such that an optical path length in each of the optical cavities is different. The optical pulse stretcher also has a plurality of beam splitters, each of which intercepts a portion of an input optical beam and diverts the portion into one of the plurality of optical cavities. The input optical beam is stretched and a power of an output beam is reduced after passing through the optical pulse stretcher and the placement of the plurality of optical cavities and beam splitters is optimized through a model that takes into account optical beam divergence and alignment in the pluralities of the optical cavities. The optical pulse stretcher system can also function as a high-repetition-rate (MHz) laser pulse generator, making it suitable for use as a stroboscopic light source for high speed ballistic projectile imaging studies, or it can be used for high speed flow diagnostics using a laser light sheet with digital particle imaging velocimetry. The optical pulse stretcher system can also be implemented using fiber optic components to realize a rugged and compact optical system that is alignment free and easy to use.

  4. Spatio-temporal variation in European starling reproductive success at multiple small spatial scales

    PubMed Central

    Brickhill, Daisy; Evans, Peter GH; Reid, Jane M

    2015-01-01

    Understanding population dynamics requires spatio-temporal variation in demography to be measured across appropriate spatial and temporal scales. However, the most appropriate spatial scale(s) may not be obvious, few datasets cover sufficient time periods, and key demographic rates are often incompletely measured. Consequently, it is often assumed that demography will be spatially homogeneous within populations that lack obvious subdivision. Here, we quantify small-scale spatial and temporal variation in a key demographic rate, reproductive success (RS), within an apparently contiguous population of European starlings. We used hierarchical cluster analysis to define spatial clusters of nest sites at multiple small spatial scales and long-term data to test the hypothesis that small-scale spatio-temporal variation in RS occurred. RS was measured as the number of chicks alive ca. 12 days posthatch either per first brood or per nest site per breeding season (thereby incorporating multiple breeding attempts). First brood RS varied substantially among spatial clusters and years. Furthermore, the pattern of spatial variation was stable across years; some nest clusters consistently produced more chicks than others. Total seasonal RS also varied substantially among spatial clusters and years. However, the magnitude of variation was much larger and the pattern of spatial variation was no longer temporally consistent. Furthermore, the estimated magnitude of spatial variation in RS was greater at smaller spatial scales. We thereby demonstrate substantial spatial, temporal, and spatio-temporal variation in RS occurring at very small spatial scales. We show that the estimated magnitude of this variation depended on spatial scale and that spatio-temporal variation would not have been detected if season-long RS had not been measured. Such small-scale spatio-temporal variation should be incorporated into empirical and theoretical treatments of population dynamics. PMID:26380670

  5. Multiple Intelligence Levels of Physical Education and Sports School Students

    ERIC Educational Resources Information Center

    Ekici, Summani

    2011-01-01

    The purpose of this research is to analyze the multiple intelligence levels of academies of physical education and sports students according to some demographic factors. To obtain data about multiple intelligence levels in the research, the multiple intelligence inventory, developed by Ozden (2003), was applied to a total of 1.199 students, of…

  6. Influence of Temporal Context on Value in the Multiple-Chains and Successive-Encounters Procedures

    PubMed Central

    O'Daly, Matthew; Angulo, Samuel; Gipson, Cassandra; Fantino, Edmund

    2006-01-01

    This set of studies explored the influence of temporal context across multiple-chain and multiple-successive-encounters procedures. Following training with different temporal contexts, the value of stimuli sharing similar reinforcement schedules was assessed by presenting these stimuli in concurrent probes. The results for the multiple-chain schedule indicate that temporal context does impact the value of a conditioned reinforcer consistent with delay-reduction theory, such that a stimulus signaling a greater reduction in delay until reinforcement has greater value. Further, nonreinforced stimuli that are concurrently presented with the preferred terminal link also have greater value, consistent with value transfer. The effects of context on value for conditions with the multiple-successive-encounters procedure, however, appear to depend on whether the search schedule or alternate handling schedule was manipulated, as well as on whether the tested stimuli were the rich or lean schedules in their components. Overall, the results help delineate the conditions under which temporal context affects conditioned-reinforcement value (acting as a learning variable) and the conditions under which it does not (acting as a performance variable), an issue of relevance to theories of choice. PMID:16776054

  7. Temporal weighting functions for interaural time and level differences. IV. Effects of carrier frequency

    PubMed Central

    Stecker, G. Christopher

    2014-01-01

    Temporal variation in listeners' sensitivity to interaural time and level differences (ITD and ILD, respectively) was measured for sounds of different carrier frequency using the temporal weighting function (TWF) paradigm [Stecker and Hafter (2002) J. Acoust. Soc. Am. 112,1046–1057]. Listeners made lateralization judgments following brief trains of filtered impulses (Gabor clicks) presented over headphones with overall ITD and/or ILD ranging from ±500 μs ITD and/or ±5 dB ILD across trials. Individual clicks within each train varied by an additional ±100 μs ITD or ±2 dB ILD to allow TWF calculation by multiple regression. In separate conditions, TWFs were measured for carrier frequencies of 1, 2, 4, and 8 kHz. Consistent with past studies, TWFs demonstrated high weight on the first click for stimuli with short interclick interval (ICI = 2 ms), but flatter weighting for longer ICI (5–10 ms). Some conditions additionally demonstrated greater weight for clicks near the offset than near the middle of the train. Results support a primary role of the auditory periphery in emphasizing onset and offset cues in rapidly modulated low-frequency sounds. For slower modulations, sensitivity to ongoing high-frequency ILD and low-frequency ITD cues appears subject to recency effects consistent with the effects of leaky temporal integration of binaural information. PMID:25480069

  8. Power law in random multiplicative processes with spatio-temporal correlated multipliers

    NASA Astrophysics Data System (ADS)

    Morita, Satoru

    2016-02-01

    It is well known that random multiplicative processes generate power-law probability distributions. We study how the spatio-temporal correlation of the multipliers influences the power-law exponent. We investigate two sources of the time correlation: the local environment and the global environment. In addition, we introduce two simple models through which we analytically and numerically show that the local and global environments yield different trends in the power-law exponent.

  9. Multiple-scale temporal variations and fluxes near a hydrothermal vent over the Southwest Indian Ridge

    NASA Astrophysics Data System (ADS)

    Chen, Xiaodan; Liang, Chujin; Dong, Changming; Zhou, Beifeng; Liao, Guanghong; Li, Junde

    2015-12-01

    A deep-ocean mooring system was deployed 100 m away from an active hydrothermal vent over the Southwest Indian Ridge (SWIR), where the water depth is about 2,800 m. One year of data on ocean temperature 50 m away from the ocean floor and on velocities at four levels (44 m, 40 m, 36 m, and 32 m away from the ocean floor) were collected by the mooring system. Multiplescale variations were extracted from these data: seasonal, tidal, super-tidal, and eddy scales. The semidiurnal tide was the strongest tidal signal among all the tidal constituents in both currents and temperature. With the multiple-scale variation presented in the data, a new method was developed to decompose the data into five parts in terms of temporal scales: time-mean, seasonal, tidal, super-tidal, and eddy. It was shown that both eddy and tidal heat (momentum) fluxes were characterized by variation in the bottom topography: the tidal fluxes of heat and momentum in the along-isobath direction were much stronger than those in the cross-isobath direction. For the heat flux, eddy heat flux was stronger than tidal heat flux in the cross-isobath direction, while eddy heat flux was weaker in the along-isobath direction. For the momentum flux, the eddy momentum flux was weaker than tidal momentum flux in both directions. The eddy momentum fluxes at the four levels had a good relationship with the magnitude of mean currents: it increased with the mean current in an exponential relationship.

  10. Temporal transferability and updating of zonal level accident prediction models.

    PubMed

    Hadayeghi, Alireza; Shalaby, Amer S; Persaud, Bhagwant N; Cheung, Carl

    2006-05-01

    This paper examines the temporal transferability of the zonal accident prediction models by using appropriate evaluation measures of predictive performance to assess whether the relationship between the dependent and independent variables holds reasonably well across time. The two temporal contexts are the years 1996 and 2001, with updated 1996 models being used to predict 2001 accidents in each traffic zone of the City of Toronto. The paper examines alternative updating methods for temporal transfer by imagining that only a sample of 2001 data is available. The sensitivity of the performance of the updated models to the 2001 sample size is explored. The updating procedures examined include the Bayesian updating approach and the application of calibration factors to the 1996 models. Models calibrated for the 2001 samples were also explored, but were found to be inadequate. The results show that the models are not transferable in a strict statistical sense. However, relative measures of transferability indicate that the transferred models yield useful information in the application context. Also, it is concluded that the updated accident models using the calibration factors produce better results for predicting the number of accidents in the year 2001 than using the Bayesian approach. PMID:16414003

  11. Genetics of multiple myeloma: another heterogeneity level?

    PubMed Central

    Corre, Jill; Munshi, Nikhil

    2015-01-01

    Our knowledge of myeloma genetics remained limited and lagged behind many other hematologic malignancies because of the inherent difficulties in generating metaphases within the malignant plasma cell clone. With the development of molecular techniques (microarrays and next-generation sequencing), our understanding has been highly improved in the past 5 years. These studies have not only confirmed the prevalence of wide heterogeneity in myeloma at the molecular level, but has also provided a much clearer picture of the disease pathogenesis and progression. Whether these data will enable improvements in the therapeutic approach is still a matter of debate. The next improvement will come from detailed analyses of these molecular features to try to move from a treatment fitted to every patient to individualized therapies, taking into account the complexity of the chromosomal changes, the mutation spectrum, and subclonality evolution. PMID:25628468

  12. Population-Level Representation of a Temporal Sequence Underlying Song Production in the Zebra Finch.

    PubMed

    Picardo, Michel A; Merel, Josh; Katlowitz, Kalman A; Vallentin, Daniela; Okobi, Daniel E; Benezra, Sam E; Clary, Rachel C; Pnevmatikakis, Eftychios A; Paninski, Liam; Long, Michael A

    2016-05-18

    The zebra finch brain features a set of clearly defined and hierarchically arranged motor nuclei that are selectively responsible for producing singing behavior. One of these regions, a critical forebrain structure called HVC, contains premotor neurons that are active at precise time points during song production. However, the neural representation of this behavior at a population level remains elusive. We used two-photon microscopy to monitor ensemble activity during singing, integrating across multiple trials by adopting a Bayesian inference approach to more precisely estimate burst timing. Additionally, we examined spiking and motor-related synaptic inputs using intracellular recordings during singing. With both experimental approaches, we find that premotor events do not occur preferentially at the onsets or offsets of song syllables or at specific subsyllabic motor landmarks. These results strongly support the notion that HVC projection neurons collectively exhibit a temporal sequence during singing that is uncoupled from ongoing movements. PMID:27196976

  13. Ground Motion Measurement in the Lake Mead Area (Nevada, USA), by Temporal Analysis of Multiple Interferograms.

    NASA Astrophysics Data System (ADS)

    Doin, M.; Cavalie, O.; Lasserre, C.; Briole, P.

    2005-12-01

    SAR interferometry has proven to be a reliable method for detecting small displacements due to ground subsidence. In this study, we measure ground motion around the lake Mead (Nevada, USA) using InSAR. This artificial lake has been filled with water in 1935. An earlier study, based on leveling measurements, has shown that the load associated with lake impoundment has induced a delayed subsidence of 17 centimeters. This relaxation process has been argued to be due to viscous displacement in the uppermost mantle, analogous to the postglacial rebound, but at a smaller spatial scale and with a much lower viscous relaxation scale. To quantify the deformation and thus constrain the crust and mantle rheological parameters in the lake area, we analyse multiple interferograms (~280) based on 43 ERS images acquired between 1992 and 2001 and on 12 Envisat images acquired between 2003 and 2005. ERS-Envisat interferograms are performed to merge the two data sets in one time series. With baselines smaller than 300 m, all interferograms have a very good coherence due to the desert region. Most interferograms show strong atmospheric artefacts that are partly due to the variation of water vapor vertical stratification between two satellite passes. Tropospheric delay is computed for each interferogram using the correlation between phase and elevation far from the lake area. It is then inverted for each date of SAR images before interferograms correction. These corrections are validated using data from global atmospheric models (ERA40). Corrected interferograms are then inverted to solve for time series of the expected deformation in the lake Mead area . The linear inversion treats each pixel independently from its neighbours and use the data redundancy to reduce errors such as local decorrelations. Smoothing constraints added in the inversion efficiently eliminate local atmospheric artefacts. We obtain a time series of the expected deformation in the lake Mead area. The analysis of

  14. Perceived Impact of Spasticity Is Associated with Spatial and Temporal Parameters of Gait in Multiple Sclerosis

    PubMed Central

    Balantrapu, Swathi; Sandroff, Brian M.; Sosnoff, Jacob J.; Motl, Robert W.

    2012-01-01

    Background. Spasticity is prevalent and disabling in persons with multiple sclerosis (MS), and the development of the Multiple Sclerosis Spasticity Scale-88 (MSSS-88) provides an opportunity for examining the perceived impact of spasticity and its association with gait in this population. Purpose. This study examined the association between the perceived impact of spasticity and spatio-temporal parameters of gait in persons with MS. Methods. The sample included 44 adults with MS who completed the MSSS-88 and 4 walking trials on a 26-foot GAITRiteTM electronic walkway for measurement of spatio-temporal components of gait including velocity, cadence, base of support, step time, single support, double support, and swing phase. Results. The overall MSSS-88 score was significantly associated with velocity (r = −0.371), cadence (r = −0.306), base of support (r = 0.357), step time (r = 0.305), single leg support (r = −0.388), double leg support (r = 0.379), and swing phase (r = −0.386). Conclusions. The perceived impact of spasticity coincides with alterations of the spatio-temporal parameters of gait in MS. This indicates that subsequent interventions might target a decrease in spasticity or its perceived impact as an approach for improving mobility in MS. PMID:22462022

  15. Exploring Multiple Intelligences Theory at a Community College Level.

    ERIC Educational Resources Information Center

    Berkemeier, Ginny Y. Hew

    Discusses multiple intelligence (a pluralized approach to understanding the intellect) teaching and learning of science at the higher education level, specifically within community colleges. The purpose of this study was four-fold. The first purpose was to investigate adult learning through Multiple Intelligence Theory (MI) at the community…

  16. Spectral and temporal properties of optical signals with multiple sinusoidal phase modulations.

    PubMed

    Dorrer, C

    2014-02-10

    Optical signals generated by multiple sinusoidal temporal phase modulations (multi-FMs) applied to a monochromatic field are studied from the viewpoint of their optical spectrum and temporal modulations arising from spectral impairments. Statistical analysis based on the central limit theorem shows that the signals' optical spectrum converges to a normal distribution as the number of modulations increases, allowing one to predict the frequency range containing a given fraction of the total energy with the associated cumulative density function. The conversion of frequency modulation to amplitude modulation is analyzed and simulated for arbitrary multi-FM signals. These developments are of theoretical and practical importance for high-energy laser systems, where optical pulses are phase modulated in the front end to smooth out the on-target beam profile and prevent potentially catastrophic damage to optical components. PMID:24663283

  17. Levels of Processing with Free and Cued Recall and Unilateral Temporal Lobe Epilepsy

    ERIC Educational Resources Information Center

    Lespinet-Najib, Veronique; N'Kaoua, Bernard; Sauzeon, Helene; Bresson, Christel; Rougier, Alain; Claverie, Bernard

    2004-01-01

    This study investigates the role of the temporal lobes in levels-of-processing tasks (phonetic and semantic encoding) according to the nature of recall tasks (free and cued recall). These tasks were administered to 48 patients with unilateral temporal epilepsy (right ''RTLE''=24; left ''LTLE''=24) and a normal group (n=24). The results indicated…

  18. ePRISM: A case study in multiple proxy and mixed temporal resolution integration

    USGS Publications Warehouse

    Robinson, Marci M.; Dowsett, Harry J.

    2010-01-01

    As part of the Pliocene Research, Interpretation and Synoptic Mapping (PRISM) Project, we present the ePRISM experiment designed I) to provide climate modelers with a reconstruction of an early Pliocene warm period that was warmer than the PRISM interval (similar to 3.3 to 3.0 Ma), yet still similar in many ways to modern conditions and 2) to provide an example of how best to integrate multiple-proxy sea surface temperature (SST) data from time series with varying degrees of temporal resolution and age control as we begin to build the next generation of PRISM, the PRISM4 reconstruction, spanning a constricted time interval. While it is possible to tie individual SST estimates to a single light (warm) oxygen isotope event, we find that the warm peak average of SST estimates over a narrowed time interval is preferential for paleoclimate reconstruction as it allows for the inclusion of more records of multiple paleotemperature proxies.

  19. Temporally controlled release of multiple growth factors from a self-assembling peptide hydrogel.

    PubMed

    Bruggeman, Kiara F; Rodriguez, Alexandra L; Parish, Clare L; Williams, Richard J; Nisbet, David R

    2016-09-23

    Protein growth factors have demonstrated great potential for tissue repair, but their inherent instability and large size prevents meaningful presentation to biologically protected nervous tissue. Here, we create a nanofibrous network from a self-assembling peptide (SAP) hydrogel to carry and stabilize the growth factors. We significantly reduced growth factor degradation to increase their lifespan by over 40 times. To control the temporal release profile we covalently attached polysaccharide chitosan molecules to the growth factor to increase its interactions with the hydrogel nanofibers and achieved a 4 h delay, demonstrating the potential of this method to provide temporally controlled growth factor delivery. We also describe release rate based analysis to examine the growth factor delivery in more detail than standard cumulative release profiles allow and show that the chitosan attachment method provided a more consistent release profile with a 60% reduction in fluctuations. To prove the potential of this system as a complex growth factor delivery platform we demonstrate for the first time temporally distinct release of multiple growth factors from a single tissue specific SAP hydrogel: a significant goal in regenerative medicine. PMID:27517970

  20. Temporally controlled release of multiple growth factors from a self-assembling peptide hydrogel

    NASA Astrophysics Data System (ADS)

    Bruggeman, Kiara F.; Rodriguez, Alexandra L.; Parish, Clare L.; Williams, Richard J.; Nisbet, David R.

    2016-09-01

    Protein growth factors have demonstrated great potential for tissue repair, but their inherent instability and large size prevents meaningful presentation to biologically protected nervous tissue. Here, we create a nanofibrous network from a self-assembling peptide (SAP) hydrogel to carry and stabilize the growth factors. We significantly reduced growth factor degradation to increase their lifespan by over 40 times. To control the temporal release profile we covalently attached polysaccharide chitosan molecules to the growth factor to increase its interactions with the hydrogel nanofibers and achieved a 4 h delay, demonstrating the potential of this method to provide temporally controlled growth factor delivery. We also describe release rate based analysis to examine the growth factor delivery in more detail than standard cumulative release profiles allow and show that the chitosan attachment method provided a more consistent release profile with a 60% reduction in fluctuations. To prove the potential of this system as a complex growth factor delivery platform we demonstrate for the first time temporally distinct release of multiple growth factors from a single tissue specific SAP hydrogel: a significant goal in regenerative medicine.

  1. Long-term music training tunes how the brain temporally binds signals from multiple senses.

    PubMed

    Lee, Hweeling; Noppeney, Uta

    2011-12-20

    Practicing a musical instrument is a rich multisensory experience involving the integration of visual, auditory, and tactile inputs with motor responses. This combined psychophysics-fMRI study used the musician's brain to investigate how sensory-motor experience molds temporal binding of auditory and visual signals. Behaviorally, musicians exhibited a narrower temporal integration window than nonmusicians for music but not for speech. At the neural level, musicians showed increased audiovisual asynchrony responses and effective connectivity selectively for music in a superior temporal sulcus-premotor-cerebellar circuitry. Critically, the premotor asynchrony effects predicted musicians' perceptual sensitivity to audiovisual asynchrony. Our results suggest that piano practicing fine tunes an internal forward model mapping from action plans of piano playing onto visible finger movements and sounds. This internal forward model furnishes more precise estimates of the relative audiovisual timings and hence, stronger prediction error signals specifically for asynchronous music in a premotor-cerebellar circuitry. Our findings show intimate links between action production and audiovisual temporal binding in perception. PMID:22114191

  2. Irresistible ants: exposure to novel toxic prey increases consumption over multiple temporal scales.

    PubMed

    Herr, Mark W; Robbins, Travis R; Centi, Alan; Thawley, Christopher J; Langkilde, Tracy

    2016-07-01

    As species become increasingly exposed to novel challenges, it is critical to understand how evolutionary (i.e., generational) and plastic (i.e., within lifetime) responses work together to determine a species' fate or predict its distribution. The introduction of non-native species imposes novel pressures on the native species that they encounter. Understanding how native species exposed to toxic or distasteful invaders change their feeding behavior can provide insight into their ability to cope with these novel threats as well as broader questions about the evolution of this behavior. We demonstrated that native eastern fence lizards do not avoid consuming invasive fire ants following repeated exposure to this toxic prey. Rather fence lizards increased their consumption of these ants following exposure on three different temporal scales. Lizards ate more fire ants when they were exposed to this toxic prey over successive days. Lizards consumed more fire ants if they had been exposed to fire ants as juveniles 6 months earlier. Finally, lizards from populations exposed to fire ants over multiple generations consumed more fire ants than those from fire ant-free areas. These results suggest that the potentially lethal consumption of fire ants may carry benefits resulting in selection for this behavior, and learning that persists long after initial exposure. Future research on the response of native predators to venomous prey over multiple temporal scales will be valuable in determining the long-term effects of invasion by these novel threats. PMID:27000944

  3. Multiple dipole modeling and localization from spatio-temporal MEG data

    SciTech Connect

    Mosher, J.C. ); Lewis, P.S. ); Leahy, R. )

    1992-06-01

    An array of biomagnetometers may be used to measure the spatio-temporal neuromagnetic field or magnetoencephalogram (MEG) produced by neural activity in the brain. A popular model for the neural activity produced in response to a given sensory stimulus is a set of current dipoles, where each dipole represents the primary current associated with the combined activation of a large number of neutrons located in a small volume of the brain. An important problem in the interpretation of MEG data from evoked response experiments is the localization of these neural current dipoles. The authors present here a linear algebraic framework for three common spatio-temporal dipole models: (i) unconstrained dipoles, (ii) dipoles with a fixed location, and (iii) dipoles with a fixed orientation and location. In all cases, they assume that the location, orientation, and magnitude of the dipoles are unknown. With a common model, they show how the parameter estimation problem may be decomposed into the estimation of the time invariant parameter using nonlinear least-squares minimization, followed by linear estimation of the associated time varying parameters. A subspace formulation is presented and used to derive a suboptimal least-squares subspace scanning method. The resulting algorithm is a special case of the well-known MUltiple SIgnal Classification (MUSIC) method, in which the solution (multiple dipole locations) is found by scanning potential locations using a simple one dipole model.

  4. Describing multiple levels of abstraction in the metabolism

    SciTech Connect

    Mavrovouniotis, M.L.

    1994-12-31

    We discuss some central issues that arise in the computer representation of the metabolism and its subsystems. We provide a framework for the representation of metabolites and bioreactions at multiple levels of detail. The framework is based on defining an explicit linear mapping of metabolites and reactions from one level of detail to another. A simple reaction mechanism serves as an illustration and shows the emergence of the concept of a catalyst from metabolic abstraction levels.

  5. A Temporal Model of Level-Invariant, Tone-in-Noise Detection

    ERIC Educational Resources Information Center

    Berg, Bruce G.

    2004-01-01

    Level-invariant detection refers to findings that thresholds in tone-in-noise detection are unaffected by roving-level procedures that degrade energy cues. Such data are inconsistent with ideas that detection is based on the energy passed by an auditory filter. A hypothesis that detection is based on a level-invariant temporal cue is advanced.…

  6. Patterns of temporal scaling of groundwater level fluctuation

    NASA Astrophysics Data System (ADS)

    Yu, Xue; Ghasemizadeh, Reza; Padilla, Ingrid Y.; Kaeli, David; Alshawabkeh, Akram

    2016-05-01

    We studied the fractal scaling behavior of groundwater level fluctuation for various types of aquifers in Puerto Rico using the methods of (1) detrended fluctuation analysis (DFA) to examine the monofractality and (2) wavelet transform maximum modulus (WTMM) to analyze the multifractality. The DFA results show that fractals exist in groundwater fluctuations of all the aquifers with scaling patterns that are anti-persistent (1 < β < 1.5; 1.32 ± 0.12, 18 wells) or persistent (β > 1.5; 1.62 ± 0.07, 4 wells). The multifractal analysis confirmed the need to characterize these highly complex processes with multifractality, which originated from the stochastic distribution of the irregularly-shaped fluctuations. The singularity spectra of the fluctuation processes in each well were site specific. We found a general elevational effect with smaller fractal scaling coefficients in the shallower wells, except for the Northern Karst Aquifer Upper System. High spatial variability of fractal scaling of groundwater level fluctuations in the karst aquifer is due to the coupled effects of anthropogenic perturbations, precipitation, elevation and particularly the high heterogeneous hydrogeological conditions.

  7. Assessing Temporal and Spatial Patterns of Observed and Predicted Ozone in Multiple Urban Areas

    PubMed Central

    Simon, Heather; Wells, Benjamin; Baker, Kirk R.; Hubbell, Bryan

    2016-01-01

    Background: Ambient monitoring data show spatial gradients in ozone (O3) across urban areas. Nitrogen oxide (NOx) emissions reductions will likely alter these gradients. Epidemiological studies often use exposure surrogates that may not fully account for the impacts of spatially and temporally changing concentrations on population exposure. Objectives: We examined the impact of large NOx decreases on spatial and temporal O3 patterns and the implications on exposure. Methods: We used a photochemical model to estimate O3 response to large NOx reductions. We derived time series of 2006–2008 O3 concentrations consistent with 50% and 75% NOx emissions reduction scenarios in three urban areas (Atlanta, Philadelphia, and Chicago) at each monitor location and spatially interpolated O3 to census-tract centroids. Results: We predicted that low O3 concentrations would increase and high O3 concentrations would decrease in response to NOx reductions within an urban area. O3 increases occurred across larger areas for the seasonal mean metric than for the regulatory metric (annual 4th highest daily 8-hr maximum) and were located only in urban core areas. O3 always decreased outside the urban core (e.g., at locations of maximum local ozone concentration) for both metrics and decreased within the urban core in some instances. NOx reductions led to more uniform spatial gradients and diurnal and seasonal patterns and caused seasonal peaks in midrange O3 concentrations to shift from midsummer to earlier in the year. Conclusions: These changes have implications for how O3 exposure may change in response to NOx reductions and are informative for the design of future epidemiology studies and risk assessments. Citation: Simon H, Wells B, Baker KR, Hubbell B. 2016. Assessing temporal and spatial patterns of observed and predicted ozone in multiple urban areas. Environ Health Perspect 124:1443–1452; http://dx.doi.org/10.1289/EHP190 PMID:27153213

  8. Wait-Time and Multiple Representation Levels in Chemistry Lessons

    ERIC Educational Resources Information Center

    Li, Winnie Sim Siew; Arshad, Mohammad Yusof

    2014-01-01

    Wait-time is an important aspect in a teaching and learning process, especially after the teacher has posed questions to students, as it is one of the factors in determining quality of students' responses. This article describes the practices of wait-time one after teacher's questions at multiple representation levels among twenty three chemistry…

  9. Collective synchronization of self/non-self discrimination in T cell activation, across multiple spatio-temporal scales

    NASA Astrophysics Data System (ADS)

    Altan-Bonnet, Gregoire

    The immune system is a collection of cells whose function is to eradicate pathogenic infections and malignant tumors while protecting healthy tissues. Recent work has delineated key molecular and cellular mechanisms associated with the ability to discriminate self from non-self agents. For example, structural studies have quantified the biophysical characteristics of antigenic molecules (those prone to trigger lymphocyte activation and a subsequent immune response). However, such molecular mechanisms were found to be highly unreliable at the individual cellular level. We will present recent efforts to build experimentally validated computational models of the immune responses at the collective cell level. Such models have become critical to delineate how higher-level integration through nonlinear amplification in signal transduction, dynamic feedback in lymphocyte differentiation and cell-to-cell communication allows the immune system to enforce reliable self/non-self discrimination at the organism level. In particular, we will present recent results demonstrating how T cells tune their antigen discrimination according to cytokine cues, and how competition for cytokine within polyclonal populations of cells shape the repertoire of responding clones. Additionally, we will present recent theoretical and experimental results demonstrating how competition between diffusion and consumption of cytokines determine the range of cell-cell communications within lymphoid organs. Finally, we will discuss how biochemically explicit models, combined with quantitative experimental validation, unravel the relevance of new feedbacks for immune regulations across multiple spatial and temporal scales.

  10. Superradiance in spin-j particles: Effects of multiple levels

    NASA Astrophysics Data System (ADS)

    Lin, G.-D.; Yelin, S. F.

    2012-03-01

    We study the superradiance dynamics in a dense system of atoms each of which can be generally a spin-j particle, with j an arbitrary half-integer. We generalize Dicke's superradiance point of view to multiple-level systems and compare the results based on a novel approach we developed previously [Lin and Yelin, Adv. Atom. Mol. Opt. Phys. 61, in press (2012)]. Using this formalism we derive an effective two-body description that shows cooperative and collective effects for spin-j particles, taking into account the coherence of transitions between different atomic levels. We find that superradiance, which is well known as a many-body phenomenon, can also be modified by multiple-level effects. We also discuss the feasibility and propose that our approach can be applied to polar molecules, for their vibrational states have a multilevel structure which is partially harmonic.

  11. Novel approaches in Extended Principal Components Analysis to compare spatio-temporal patterns among multiple image time series

    NASA Astrophysics Data System (ADS)

    Neeti, N.; Eastman, R.

    2012-12-01

    Extended Principal Components Analysis (EPCA) aims to examine the patterns of variability shared among multiple image time series. Conventionally, this is done by virtually extending the spatial dimension of the time series by spatially concatenating the different time series and then performing S-mode PCA. In S-mode analysis, samples in space are the statistical variables and samples in time are the statistical observations. This paper introduces the concept of temporal concatenation of multiple image time series to perform EPCA. EPCA can also be done with T-mode orientation in which samples in time are the statistical variables and samples in space are the statistical observations. This leads to a total of four orientations in which EPCA can be carried out. This research explores these four orientations and their implications in investigating spatio-temporal relationships among multiple time series. This research demonstrates that EPCA carried out with temporal concatenation of the multiple time series with T-mode (tT) is able to identify similar spatial patterns among multiple time series. The conventional S-mode EPCA with spatial concatenation (sS) identifies similar temporal patterns among multiple time series. The other two modes, namely T-mode with spatial concatenation (sT) and S-mode with temporal concatenation (tS), are able to identify patterns which share consistent temporal phase relationships and consistent spatial phase relationships with each other, respectively. In a case study using three sets of precipitation time series data from GPCP, CMAP and NCEP-DOE, the results show that examination of all four modes provides an effective basis comparison of the series.

  12. Efficient bit-level, word-level, and block-level systolic arrays for matrix-matrix multiplication

    SciTech Connect

    De Groot, A.J.; Parker, S.R.; Johansson, E.M.

    1988-02-01

    This paper investigates the mapping of matrix-matrix multiplication onto bit level, word level and block level systolic arrays. Highly efficient and regular bit level, word level and block level systolic arrays are described. Efficiencies of many block level and word level systolic arrays reported in this paper approach 100/percent/, three times the efficiencies of systolic arrays reported previously. Bit level systolic arrays reported in this paper require less computation time than do bit level systolic arrays reported previously and, for special matrices, require less cells. Execution times of block level systolic algorithms on sixty-four-element multiprocessor agree with theory.

  13. Change detection using vegetation indices and multiplatform satellite imagery at multiple temporal and spatial scales

    USGS Publications Warehouse

    Glenn, Edward P.; Nagler, Pamela L.; Huete, Alfredo R.

    2014-01-01

    This chapter describes emerging methods for using satellite imagery across temporal and spatial scales using a case study approach to illustrate some of the opportunities now available for combining observations across scales. It explores the use of multiplatform sensor systems to characterize ecological change, as exemplified by efforts to scale the effects of a biocontrol insect (the leaf beetle Diorhabda carinulata) on the phenology and water use of Tamarix shrubs (Tamarix ramosissima and related species and hybrids) targeted for removal on western U.S. rivers, from the level of individual leaves to the regional level of measurement. Finally, the chapter summarizes the lessons learned and emphasize the need for ground data to calibrate and validate remote sensing data and the types of errors inherent in scaling point data over wide areas, illustrated with research on evapotranspiration (ET) of Tamarix using a wide range of ground measurement and remote sensing methods.

  14. Temporal learning and list-level proportion congruency: conflict adaptation or learning when to respond?

    PubMed

    Schmidt, James R

    2013-01-01

    The current report presents a temporal learning account as a potential alternative to the conflict adaptation account of list-level proportion congruent effects in the Stroop paradigm. Specifically, retrieval of information about response times on previous trials influences a participant's preparedness to respond at a similar time on following trials. First, an adaptation of the Parallel Episodic Processing (PEP) model is presented, and a list-level effect is produced with a temporal learning mechanism. Next, linear mixed effect model analyses show that temporal learning biases are present in list-level proportion congruent data. A non-conflict experiment is then presented in which a list-level effect is observed with a contrast, rather than congruency, manipulation. Analyses of the experimental and simulated data could not, however, provide a clear picture of whether temporal learning was the sole contributor to the list-level proportion congruent effect. These results do, however, demonstrate that caution is warranted when interpreting list-level proportion congruent effects. PMID:24312413

  15. Temporal Learning and List-Level Proportion Congruency: Conflict Adaptation or Learning When to Respond?

    PubMed Central

    Schmidt, James R.

    2013-01-01

    The current report presents a temporal learning account as a potential alternative to the conflict adaptation account of list-level proportion congruent effects in the Stroop paradigm. Specifically, retrieval of information about response times on previous trials influences a participant's preparedness to respond at a similar time on following trials. First, an adaptation of the Parallel Episodic Processing (PEP) model is presented, and a list-level effect is produced with a temporal learning mechanism. Next, linear mixed effect model analyses show that temporal learning biases are present in list-level proportion congruent data. A non-conflict experiment is then presented in which a list-level effect is observed with a contrast, rather than congruency, manipulation. Analyses of the experimental and simulated data could not, however, provide a clear picture of whether temporal learning was the sole contributor to the list-level proportion congruent effect. These results do, however, demonstrate that caution is warranted when interpreting list-level proportion congruent effects. PMID:24312413

  16. Interleukin-6 levels are increased in temporal lobe epilepsy but not in extra-temporal lobe epilepsy.

    PubMed

    Liimatainen, Suvi; Fallah, Mahdi; Kharazmi, Elham; Peltola, Maria; Peltola, Jukka

    2009-05-01

    Previous studies have reported activation of inflammatory cytokines in seizures, but clinical characteristics of epilepsy associated with cytokine activation have not been well established. In this study, serum levels of interleukin-6 (IL-6) and interleukin-1 receptor antagonist (IL-1RA) were measured, and clinical characteristics of epilepsy were assessed in 86 well-evaluated patients with refractory focal epilepsy and in 5 patients with controlled focal epilepsy. Epilepsy was evaluated based on patient histories, electroclinical findings, and high-resolution brain MRI scans. Sixty-three healthy blood donors served as controls. IL-6 concentrations were chronically increased in epilepsy patients (11%) compared with healthy controls (0%) (P = 0.007). Increased levels of IL-6 were more prevalent in patients with temporal lobe epilepsy (TLE) compared to patients with extra-TLE (P = 0.028). Also the mean and the median serum levels of IL-6 were higher in patients with TLE than in patients with extra-TLE (P = 0.042). Concentrations of IL-1RA were not significantly different in patients compared with controls. Indicated by increased levels of IL-6 in TLE, epilepsy type is important in determining chronic overproduction of cytokines in refractory focal epilepsy. The results may reflect a chronic immunological process in the brain in patients with refractory epilepsy. PMID:19252806

  17. Collective cavity quantum electrodynamics with multiple atomic levels

    SciTech Connect

    Arnold, Kyle J.; Baden, Markus P.; Barrett, Murray D.

    2011-09-15

    We study the transmission spectra of ultracold rubidium atoms coupled to a high-finesse optical cavity. Under weak probing with {pi}-polarized light, the linear response of the system is that of a collective spin with multiple levels coupled to a single mode of the cavity. By varying the atom number, we change the collective coupling of the system. We observe the change in transmission spectra when going from a regime where the collective coupling is much smaller than the separation of the atomic levels to a regime where both are of comparable size. The observations are in good agreement with a reduced model we developed for our system.

  18. Spatio-temporal patterns of dengue in Malaysia: combining address and sub-district level.

    PubMed

    Ling, Cheong Y; Gruebner, Oliver; Krämer, Alexander; Lakes, Tobia

    2014-11-01

    Spatio-temporal patterns of dengue risk in Malaysia were studied both at the address and the sub-district level in the province of Selangor and the Federal Territory of Kuala Lumpur. We geocoded laboratory-confirmed dengue cases from the years 2008 to 2010 at the address level and further aggregated the cases in proportion to the population at risk at the sub-district level. Kulldorff's spatial scan statistic was applied for the investigation that identified changing spatial patterns of dengue cases at both levels. At the address level, spatio-temporal clusters of dengue cases were concentrated at the central and south-eastern part of the study area in the early part of the years studied. Analyses at the sub-district level revealed a consistent spatial clustering of a high number of cases proportional to the population at risk. Linking both levels assisted in the identification of differences and confirmed the presence of areas at high risk for dengue infection. Our results suggest that the observed dengue cases had both a spatial and a temporal epidemiological component, which needs to be acknowledged and addressed to develop efficient control measures, including spatially explicit vector control. Our findings highlight the importance of detailed geographical analysis of disease cases in heterogeneous environments with a focus on clustered populations at different spatial and temporal scales. We conclude that bringing together information on the spatio-temporal distribution of dengue cases with a deeper insight of linkages between dengue risk, climate factors and land use constitutes an important step towards the development of an effective risk management strategy. PMID:25545931

  19. A multiple index integrating different levels of organization.

    PubMed

    Cortes, Rui; Hughes, Samantha; Coimbra, Ana; Monteiro, Sandra; Pereira, Vítor; Lopes, Marisa; Pereira, Sandra; Pinto, Ana; Sampaio, Ana; Santos, Cátia; Carrola, João; de Jesus, Joaquim; Varandas, Simone

    2016-10-01

    Many methods in freshwater biomonitoring tend to be restricted to a few levels of biological organization, limiting the potential spectrum of measurable of cause-effect responses to different anthropogenic impacts. We combined distinct organisational levels, covering biological biomarkers (histopathological and biochemical reactions in liver and fish gills), community based bioindicators (fish guilds, invertebrate metrics/traits and chironomid pupal exuviae) and ecosystem functional indicators (decomposition rates) to assess ecological status at designated Water Framework Directive monitoring sites, covering a gradient of human impact across several rivers in northern Portugal. We used Random Forest to rank the variables that contributed more significantly to successfully predict the different classes of ecological status and also to provide specific cut levels to discriminate each WFD class based on reference condition. A total of 59 Biological Quality Elements and functional indicators were determined using this procedure and subsequently applied to develop the integrated Multiple Ecological Level Index (MELI Index), a potentially powerful bioassessment tool. PMID:27344015

  20. Flicker Adaptation of Low-Level Cortical Visual Neurons Contributes to Temporal Dilation

    ERIC Educational Resources Information Center

    Ortega, Laura; Guzman-Martinez, Emmanuel; Grabowecky, Marcia; Suzuki, Satoru

    2012-01-01

    Several seconds of adaptation to a flickered stimulus causes a subsequent brief static stimulus to appear longer in duration. Nonsensory factors, such as increased arousal and attention, have been thought to mediate this flicker-based temporal-dilation aftereffect. In this study, we provide evidence that adaptation of low-level cortical visual…

  1. Spatial-temporal control of interferences of multiple tunneling photoelectron wave packets

    NASA Astrophysics Data System (ADS)

    Li, Min; Geng, Ji-Wei; Liu, Ming-Ming; Zheng, Xu; Peng, Liang-You; Gong, Qihuang; Liu, Yunquan

    2015-07-01

    We theoretically study the control of the interferences of multiple tunneling photoelectron wave packets in both temporal and spatial domains by an orthogonally polarized two-color laser pulse. Profound carpetlike and stripelike interference patterns can be turned on or off in the momentum spectra using a weak streaking field at half the frequency of a strong fundamental field. The modulations of the interference patterns with respect to the relative phase between the two frequency components are well recaptured by both a semiclassical interference model and an ab initio simulation with numerically solving the time-dependent Schrödinger equation. We highlight the importance of the ionic Coulomb potential on the photoelectron angular distributions of atoms in the orthogonally polarized two-color pulses. It is shown that the interference induced by the forward rescattering trajectories is enhanced while the contribution of the direct trajectories is suppressed. This study offers alternative routes toward probing and controlling the ultrafast ionization dynamics of atoms and molecules.

  2. Spatial and temporal statistical analysis of a ground-water level network, Broward County, Florida

    USGS Publications Warehouse

    Swain, E.D.; Sonenshein, R.S.

    1994-01-01

    The U.S. Geological Survey has developed a method to evaluate the spatial and temporal statistics of a continuous ground-water level recorder network in Broward County, Florida. Because the Broward County network is sparse for most spatial statistics, a technique has been developed to define polygons for each well that represent the area monitored by the well within specified criteria. The boundaries of these "confidence polygons" are defined by the endpoints of radial lines oriented toward the other wells. The lengths of these lines are determined as the statistically estimated distances to the points at which ground-water levels can be predicted within specirfied criteria. The confidence polygons indicate: (1) the areal coverage of the network, (2) locations where data are unavailable, and (3) areas of redundant data collection. Comparison with data from a noncontinuous recorder well indicates that the confidence polygons are a good represen- tation of areal coverages. The temporal analysis utilizes statistical techniques similar to those used in the spatial method, defining variations in time rather than in space. Consequently, instead of defining radial distances to points, time intervals are defined over which water-level values can be predicted within a specified confidence. These "temporal confidence intervals" correspond to maximum allowable periods between field measure- ments. To combine all results from the analyses, a single coefficient reflecting the spatial and temporal results has been developed. The coefficient is referred to as the Spatial and Temporal Adequacy and Redundancy Evaluation (STARE) and is determined by three factors: the size of the confidence polygon, the number of times the well is part of a redundant pair, and the temporal confidence interval. This coefficient and the individual results of each analysis are used in evaluating the present network and determining future management decisions.

  3. A Graphical Framework for Specification of Clinical Guidelines at Multiple Representation Levels

    PubMed Central

    Shalom, Erez; Shahar, Yuval

    2005-01-01

    Formalization of a clinical guideline for purposes of automated application and quality assessment mainly involves conversion of its free-text representation into a machine comprehensible representation, i.e., a formal language, thus enabling automated support. The main issues involved in this process are related to the collaboration between the expert physician and the knowledge engineer. We introduce GESHER - a graphical framework for specification of clinical guidelines at multiple representation levels. The GESHER architecture facilitates incremental specification through a set of views adapted to each representation level, enabling this process to proceed smoothly and in a transparent fashion, fostering extensive collaboration among the various types of users. The GESHER framework supports specification of guidelines at multiple representation levels, in more than one specification language, and uses the DeGeL digital guideline library architecture as its knowledge base. The GESHER architecture also uses a temporal abstraction knowledge base to store its declarative knowledge, and a standard medical-vocabularies server for generic specification of key terms, thus enabling reuse of the specification at multiple sites. PMID:16779126

  4. Multiple levels of control in the Stroop task.

    PubMed

    Bugg, Julie M; Jacoby, Larry L; Toth, Jeffrey P

    2008-12-01

    Multiple levels of control may be used in service of reducing Stroop interference. One is list-wide, whereby interference is reduced strategically in lists that include disproportionately more incongruent trials. A second, item-specific control is observed when proportion congruence is manipulated at the level of items. Item-specific control reduces interference for mostly incongruent relative to mostly congruent items. First, we show that item-specific control may drive both list-wide and item-specific proportion congruence effects (Experiment 1). We then show that item-specific control affects Stroop interference similarly when a single feature (a word) as opposed to a feature combination (a word+font type) signals proportion congruence (Experiment 2). Although this suggests that font type offers little advantage for controlling Stroop interference beyond the word, a novel, font-specific proportion congruence effect is observed in Experiment 3, indicating that font type can be used to control interference. These findings support the idea that multiple levels of control are used in reducing Stroop interference. PMID:19015507

  5. Physics of multiple level hairpin vortex structures in turbulence

    NASA Astrophysics Data System (ADS)

    Wang, YiQian; Al-Dujaly, Hassan; Yan, YongHua; Zhao, Ning; Liu, ChaoQun

    2016-02-01

    Previous experimental and numerical studies have revealed that the hairpin vortex is a basic flow element of transitional boundary layer. The hairpin vortex is believed to have legs, necks and a ring head. Based on our DNS study, the legs and the ring head are generated separately by different mechanisms. The legs function like an engine to generate low speed zones by rotation, create shear layers with surrounding high speed neighbor fluids, and further cause vortex ring formation through shear layer instability. In addition, the ring head is Ω-shaped and separated from quasi-streamwise legs from the beginning. Contrary to the classical concept of "vortex breakdown", we believe transition from laminar flow to turbulence is a "buildup" process of multiple level vortical structures. The vortex rings of first level hairpins are mostly responsible for positive spikes, which cause new vorticity rollup, second level vortex leg formation and finally smaller second level vortex ring generation. The third and lower level vortices are generated following the same mechanism. In this paper, the physical process from Λ-vortex to multi-level hairpin vortices is described in detail.

  6. Diversity Promotes Temporal Stability across Levels of Ecosystem Organization in Experimental Grasslands

    PubMed Central

    Proulx, Raphaël; Wirth, Christian; Voigt, Winfried; Weigelt, Alexandra; Roscher, Christiane; Attinger, Sabine; Baade, Jussi; Barnard, Romain L.; Buchmann, Nina; Buscot, François; Eisenhauer, Nico; Fischer, Markus; Gleixner, Gerd; Halle, Stefan; Hildebrandt, Anke; Kowalski, Esther; Kuu, Annely; Lange, Markus; Milcu, Alex; Niklaus, Pascal A.; Oelmann, Yvonne; Rosenkranz, Stephan; Sabais, Alexander; Scherber, Christoph; Scherer-Lorenzen, Michael; Scheu, Stefan; Schulze, Ernst-Detlef; Schumacher, Jens; Schwichtenberg, Guido; Soussana, Jean-François; Temperton, Vicky M.; Weisser, Wolfgang W.; Wilcke, Wolfgang; Schmid, Bernhard

    2010-01-01

    The diversity–stability hypothesis states that current losses of biodiversity can impair the ability of an ecosystem to dampen the effect of environmental perturbations on its functioning. Using data from a long-term and comprehensive biodiversity experiment, we quantified the temporal stability of 42 variables characterizing twelve ecological functions in managed grassland plots varying in plant species richness. We demonstrate that diversity increases stability i) across trophic levels (producer, consumer), ii) at both the system (community, ecosystem) and the component levels (population, functional group, phylogenetic clade), and iii) primarily for aboveground rather than belowground processes. Temporal synchronization across studied variables was mostly unaffected with increasing species richness. This study provides the strongest empirical support so far that diversity promotes stability across different ecological functions and levels of ecosystem organization in grasslands. PMID:20967213

  7. Emergy evaluation of contrasting dairy systems at multiple levels.

    PubMed

    Vigne, Mathieu; Peyraud, Jean-Louis; Lecomte, Philippe; Corson, Michael S; Wilfart, Aurélie

    2013-11-15

    Emergy accounting (EmA) was applied to a range of dairy systems, from low-input smallholder systems in South Mali (SM), to intermediate-input systems in two regions of France, Poitou-Charentes (PC) and Bretagne (BR), to high-input systems on Reunion Island (RI). These systems were studied at three different levels: whole-farm (dairy system and cropping system), dairy-system (dairy herd and forage land), and herd (animals only). Dairy farms in SM used the lowest total emergy at all levels and was the highest user of renewable resources. Despite the low quality of resources consumed (crop residues and natural pasture), efficiency of their use was similar to that of industrialised inputs by intensive systems in RI, PC and BR. In addition, among the systems studied, SM dairy farms lay closest to environmental sustainability, contradicting the usual image of high environmental impact of cattle production in developing countries. EmA also revealed characteristics of the three intensive systems. Systems from RI and PC had lower resource transformation efficiency and higher environmental impacts than those from BR, due mainly to feeding strategies that differed due to differing socio-climatic constraints. Application of EmA at multiple levels revealed the importance of a multi-level analysis. While the whole-farm level assesses the overall contribution of the system to its environment, the dairy-system level is suitable for comparison of multi-product systems. In contrast, the herd level focuses on herd management and bypasses debates about definition of system boundaries by excluding land management. Combining all levels highlights the contribution of livestock to the global agricultural system and identifies inefficiencies and influences of system components on the environment. PMID:23792889

  8. Action recognition by mid-level discriminative spatial-temporal volume

    NASA Astrophysics Data System (ADS)

    Chen, Feifei; Sang, Nong

    2013-10-01

    Most of recent work on action recognition in video employ action parts, attributes etc. as mid- and high-level features to represent an action. However, these action parts, attributes subject to some aspects of weak discrimination and being difficult to obtain. In this paper, we present an approach that uses mid-level discriminative Spatial-Temporal Volume to recognize human actions. The spatial-temporal volume is represented by a Feature Graph which is constructed beyond on a local collection of feature points (e.g., cuboids, STIP) located in the corresponding spatial-temporal volume. Firstly, we densely sampling spatial-temporal volumes from training videos and construct a feature graph for each volume. Then, all feature graphs are clustered using spectral cluster method. We regard feature graphs as video words and characterize videos with the bag-of-features framework which we call it the bag-of-feature-graphs framework. While, in the process of clustering, the distance between two feature graphs is computed using an efficient spectral method. Final recognition is accomplished using a linear-SVM classifier. We test our algorithm in a publicly available human action dataset, the experimental results show the effectiveness of our method.

  9. Decreased Coenzyme Q10 Levels in Multiple System Atrophy Cerebellum.

    PubMed

    Barca, Emanuele; Kleiner, Giulio; Tang, Guomei; Ziosi, Marcello; Tadesse, Saba; Masliah, Eliezer; Louis, Elan D; Faust, Phyllis; Kang, Un J; Torres, Jose; Cortes, Etty P; Vonsattel, Jean-Paul G; Kuo, Sheng-Han; Quinzii, Catarina M

    2016-07-01

    In familial and sporadic multiple system atrophy (MSA) patients, deficiency of coenzyme Q10 (CoQ10) has been associated with mutations in COQ2, which encodes the second enzyme in the CoQ10 biosynthetic pathway. Cerebellar ataxia is the most common presentation of CoQ10 deficiency, suggesting that the cerebellum might be selectively vulnerable to low levels of CoQ10 To investigate whether CoQ10 deficiency represents a common feature in the brains of MSA patients independent of the presence of COQ2 mutations, we studied CoQ10 levels in postmortem brains of 12 MSA, 9 Parkinson disease (PD), 9 essential tremor (ET) patients, and 12 controls. We also assessed mitochondrial respiratory chain enzyme activities, oxidative stress, mitochondrial mass, and levels of enzymes involved in CoQ biosynthesis. Our studies revealed CoQ10 deficiency in MSA cerebellum, which was associated with impaired CoQ biosynthesis and increased oxidative stress in the absence of COQ2 mutations. The levels of CoQ10 in the cerebella of ET and PD patients were comparable or higher than in controls. These findings suggest that CoQ10 deficiency may contribute to the pathogenesis of MSA. Because no disease modifying therapies are currently available, increasing CoQ10 levels by supplementation or upregulation of its biosynthesis may represent a novel treatment strategy for MSA patients. PMID:27235405

  10. Multiple metals predict prolactin and thyrotropin (TSH) levels in men

    SciTech Connect

    Meeker, John D.; Rossano, Mary G.; Protas, Bridget; Diamond, Michael P.; Puscheck, Elizabeth; Daly, Douglas; Paneth, Nigel; Wirth, Julia J.

    2009-10-15

    Exposure to a number of metals can affect neuroendocrine and thyroid signaling, which can result in adverse effects on development, behavior, metabolism, reproduction, and other functions. The present study assessed the relationship between metal concentrations in blood and serum prolactin (PRL) and thyrotropin (TSH) levels, markers of dopaminergic, and thyroid function, respectively, among men participating in a study of environmental influences on male reproductive health. Blood samples from 219 men were analyzed for concentrations of 11 metals and serum levels of PRL and TSH. In multiple linear regression models adjusted for age, BMI and smoking, PRL was inversely associated with arsenic, cadmium, copper, lead, manganese, molybdenum, and zinc, but positively associated with chromium. Several of these associations (Cd, Pb, Mo) are consistent with limited studies in humans or animals, and a number of the relationships (Cr, Cu, Pb, Mo) remained when additionally considering multiple metals in the model. Lead and copper were associated with non-monotonic decrease in TSH, while arsenic was associated with a dose-dependent increase in TSH. For arsenic these findings were consistent with recent experimental studies where arsenic inhibited enzymes involved in thyroid hormone synthesis and signaling. More research is needed for a better understanding of the role of metals in neuroendocrine and thyroid function and related health implications.

  11. Knowledge-level querying of temporal patterns in clinical research systems.

    PubMed

    O'Connor, Martin J; Shankar, Ravi D; Parrish, David B; Das, Amar K

    2007-01-01

    Managing time-stamped data is essential to clinical research activities and often requires the use of considerable domain knowledge. Adequately representing this domain knowledge is difficult in relational database systems. As a result, there is a need for principled methods to overcome the disconnect between the database representation of time-oriented research data and corresponding knowledge of domain-relevant concepts. In this paper, we present a set of methodologies for undertaking knowledge level querying of temporal patterns, and discuss its application to the verification of temporal constraints in clinical-trial applications. Our approach allows knowledge generated from query results to be tied to the data and, if necessary, used for further inference. We show how the Semantic Web ontology and rule languages, OWL and SWRL, respectively, can support the temporal knowledge model needed to integrate low-level representations of relational data with high-level domain concepts used in research data management. We present a scalable bridge-based software architecture that uses this knowledge model to enable dynamic querying of time-oriented research data. PMID:17911729

  12. Heterogeneity of the left temporal lobe in semantic representation and control: priming multiple versus single meanings of ambiguous words.

    PubMed

    Whitney, Carin; Jefferies, Elizabeth; Kircher, Tilo

    2011-04-01

    Semantic judgments involve both representations of meaning plus executive mechanisms that guide knowledge retrieval in a task-appropriate way. These 2 components of semantic cognition-representation and control-are commonly linked to left temporal and prefrontal cortex, respectively. This simple proposal, however, remains contentious because in most functional neuroimaging studies to date, the number of concepts being activated and the involvement of executive processes during retrieval are confounded. Using functional magnetic resonance imaging, we examined a task in which semantic representation and control demands were dissociable. Words with multiple meanings like "bank" served as targets in a double-prime paradigm, in which multiple meaning activation and maximal executive demands loaded onto different priming conditions. Anterior inferior temporal gyrus (ITG) was sensitive to the number of meanings that were retrieved, suggesting a role for this region in semantic representation, while posterior middle temporal gyrus (pMTG) and inferior frontal cortex showed greater activation in conditions that maximized executive demands. These results support a functional dissociation between left ITG and pMTG, consistent with a revised neural organization in which left prefrontal and posterior temporal areas work together to underpin aspects of semantic control. PMID:20732899

  13. Multivariate spatio-temporal modelling for assessing Antarctica's present-day contribution to sea-level rise

    PubMed Central

    Zammit-Mangion, Andrew; Rougier, Jonathan; Schön, Nana; Lindgren, Finn; Bamber, Jonathan

    2015-01-01

    Antarctica is the world's largest fresh-water reservoir, with the potential to raise sea levels by about 60 m. An ice sheet contributes to sea-level rise (SLR) when its rate of ice discharge and/or surface melting exceeds accumulation through snowfall. Constraining the contribution of the ice sheets to present-day SLR is vital both for coastal development and planning, and climate projections. Information on various ice sheet processes is available from several remote sensing data sets, as well as in situ data such as global positioning system data. These data have differing coverage, spatial support, temporal sampling and sensing characteristics, and thus, it is advantageous to combine them all in a single framework for estimation of the SLR contribution and the assessment of processes controlling mass exchange with the ocean. In this paper, we predict the rate of height change due to salient geophysical processes in Antarctica and use these to provide estimates of SLR contribution with associated uncertainties. We employ a multivariate spatio-temporal model, approximated as a Gaussian Markov random field, to take advantage of differing spatio-temporal properties of the processes to separate the causes of the observed change. The process parameters are estimated from geophysical models, while the remaining parameters are estimated using a Markov chain Monte Carlo scheme, designed to operate in a high-performance computing environment across multiple nodes. We validate our methods against a separate data set and compare the results to those from studies that invariably employ numerical model outputs directly. We conclude that it is possible, and insightful, to assess Antarctica's contribution without explicit use of numerical models. Further, the results obtained here can be used to test the geophysical numerical models for which in situ data are hard to obtain. © 2015 The Authors. Environmetrics published by John Wiley & Sons Ltd. PMID:25937792

  14. Conceptual framework for indexing visual information at multiple levels

    NASA Astrophysics Data System (ADS)

    Jaimes, Alejandro; Chang, Shih-Fu

    1999-12-01

    In this paper, we present a conceptual framework for indexing different aspects of visual information. Our framework unifies concepts from this literature in diverse fields such as cognitive psychology, library sciences, art, and the more recent content-based retrieval. We present multiple level structures for visual and non-visual and non- visual information. The ten-level visual structure presented provides a systematic way of indexing images based on syntax and semantics, and includes distinctions between general concept and visual concept. We define different types of relations at different levels of the visual structure, and also use a semantic information table to summarize important aspects related to an image. While the focus is on the development of a conceptual indexing structure, our aim is also to bring together the knowledge from various fields, unifying the issues that should be considered when building a digital image library. Our analysis stresses the limitations of state of the art content-based retrieval systems and suggests areas in which improvements are necessary.

  15. Exceptionally high levels of multiple mating in an army ant

    NASA Astrophysics Data System (ADS)

    Denny, A. Jay; Franks, Nigel R.; Powell, Scott; Edwards, Keith J.

    Most species of social insects have singly mated queens, although there are notable exceptions. Competing hypotheses have been proposed to explain the evolution of high levels of multiple mating, but this issue is far from resolved. Here we use microsatellites to investigate mating frequency in the army ant Eciton burchellii and show that queens mate with an exceptionally large number of males, eclipsing all but one other social insect species for which data are available. In addition we present evidence that suggests that mating is serial, continuing throughout the lifetime of the queen. This is the first demonstration of serial mating among social hymenoptera. We propose that high paternity within colonies is most likely to have evolved to increase genetic diversity and to counter high pathogen and parasite loads.

  16. Spatial and temporal groundwater level variation geostatistical modeling in the city of Konya, Turkey.

    PubMed

    Cay, Tayfun; Uyan, Mevlut

    2009-12-01

    Groundwater is one of the most important resources used for drinking and utility and irrigation purposes in the city of Konya, Turkey, as in many areas. The purpose of this study is to evaluate spatial and temporal changes in the level of groundwater by using geostatistical methods based on data from 91 groundwater wells during the period 1999 to 2003. Geostatistical methods have been used widely as a convenient tool to make decisions on the management of groundwater levels. To evaluate the spatial and temporal changes in the level of the groundwater, a vector-based geographic information system software package, ArcGIS 9.1 (Environmental Systems Research Institute, Redlands, California), was used for the application of an ordinary kriging method, with cross-validation leading to the estimation of groundwater levels. The average value of variogram (spherical model) for the spatial analysis was approximately 2150 m. Results of ordinary kriging for groundwater level drops were underestimated by 17%. Cross-validation errors were within an acceptable level. The kriging model also helps to detect risk-prone areas for groundwater abstraction. PMID:20099631

  17. The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development

    SciTech Connect

    Alvarez, John D.; Yasui, Dag H.; Niida, Hiroyuki; Joh, Tadashi; Loh, Dennis Y.; Kowhi-Shigematsu, Terumi

    2000-02-24

    SATB1 is expressed primarily in thymocytes and can act as a transcriptional repressor. SATB1 binds in vivo to the matrix attachment regions (MARs) of DNA, which are implicated in the loop domain organization of chromatin. The role of MAR-binding proteins in specific cell lineages is unknown. We generated SATB1-null mice to determine how SATB1 functions in the T-cell lineage. SATB1-null mice are small in size, have disproportionately small thymi and spleens, and die at 3 weeks of age. At the cellular level, multiple defects in T-cell development were observed. Immature CD3-CD4-CD8 triple negative (TN) thymocytes were greatly reduced in number, and thymocyte development was blocked mainly at the DP stage. The few peripheral CD4{sup +} single positive (SP) cells underwent apoptosis and failed to proliferate in response to activating stimuli. At the molecular level, among 589 genes examined, at least 2% of genes including a proto-oncogene, cytokine receptor genes, and apoptosis-related genes were derepressed at inappropriate stages of T-cell development in SATB1-null mice. For example, IL-2R{alpha} and IL-7R{alpha} genes were ectopically transcribed in CD4{sup 4+}-CD{sup 8+} double positive (DP) thymocytes. SATB1 appears to orchestrate the temporal and spatial expression of genes during T-cell development, thereby ensuring the proper development of this lineage. Our data provide the first evidence that MAR-binding proteins can act as global regulators of cell function in specific cell lineages.

  18. The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development

    PubMed Central

    Alvarez, John D.; Yasui, Dag H.; Niida, Hiroyuki; Joh, Tadashi; Loh, Dennis Y.; Kohwi-Shigematsu, Terumi

    2000-01-01

    SATB1 is expressed primarily in thymocytes and can act as a transcriptional repressor. SATB1 binds in vivo to the matrix attachment regions (MARs) of DNA, which are implicated in the loop domain organization of chromatin. The role of MAR-binding proteins in specific cell lineages is unknown. We generated SATB1-null mice to determine how SATB1 functions in the T-cell lineage. SATB1-null mice are small in size, have disproportionately small thymi and spleens, and die at 3 weeks of age. At the cellular level, multiple defects in T-cell development were observed. Immature CD3−CD4−CD8− triple negative (TN) thymocytes were greatly reduced in number, and thymocyte development was blocked mainly at the DP stage. The few peripheral CD4+ single positive (SP) cells underwent apoptosis and failed to proliferate in response to activating stimuli. At the molecular level, among 589 genes examined, at least 2% of genes including a proto-oncogene, cytokine receptor genes, and apoptosis-related genes were derepressed at inappropriate stages of T-cell development in SATB1-null mice. For example, IL-2Rα and IL-7Rα genes were ectopically transcribed in CD4+CD8+ double positive (DP) thymocytes. SATB1 appears to orchestrate the temporal and spatial expression of genes during T-cell development, thereby ensuring the proper development of this lineage. Our data provide the first evidence that MAR-binding proteins can act as global regulators of cell function in specific cell lineages. PMID:10716941

  19. Aircraft noise exposure affects rat behavior, plasma norepinephrine levels, and cell morphology of the temporal lobe.

    PubMed

    Di, Guo-Qing; Zhou, Bing; Li, Zheng-Guang; Lin, Qi-Li

    2011-12-01

    In order to investigate the physiological effects of airport noise exposure on organisms, in this study, we exposed Sprague-Dawley rats in soundproof chambers to previously recorded aircraft-related noise for 65 d. For comparison, we also used unexposed control rats. Noise was arranged according to aircraft flight schedules and was adjusted to its weighted equivalent continuous perceived noise levels (L(WECPN)) of 75 and 80 dB for the two experimental groups. We examined rat behaviors through an open field test and measured the concentrations of plasma norepinephrine (NE) by high performance liquid chromatography-fluorimetric detection (HPLC-FLD). We also examined the morphologies of neurons and synapses in the temporal lobe by transmission electron microscopy (TEM). Our results showed that rats exposed to airport noise of 80 dB had significantly lower line crossing number (P<0.05) and significantly longer center area duration (P<0.05) than control animals. After 29 d of airport noise exposure, the concentration of plasma NE of exposed rats was significantly higher than that of the control group (P<0.05). We also determined that the neuron and synapsis of the temporal lobe of rats showed signs of damage after aircraft noise of 80 dB exposure for 65 d. In conclusion, exposing rats to long-term aircraft noise affects their behaviors, plasma NE levels, and cell morphology of the temporal lobe. PMID:22135145

  20. Aircraft noise exposure affects rat behavior, plasma norepinephrine levels, and cell morphology of the temporal lobe*

    PubMed Central

    Di, Guo-qing; Zhou, Bing; Li, Zheng-guang; Lin, Qi-li

    2011-01-01

    In order to investigate the physiological effects of airport noise exposure on organisms, in this study, we exposed Sprague-Dawley rats in soundproof chambers to previously recorded aircraft-related noise for 65 d. For comparison, we also used unexposed control rats. Noise was arranged according to aircraft flight schedules and was adjusted to its weighted equivalent continuous perceived noise levels (L WECPN) of 75 and 80 dB for the two experimental groups. We examined rat behaviors through an open field test and measured the concentrations of plasma norepinephrine (NE) by high performance liquid chromatography-fluorimetric detection (HPLC-FLD). We also examined the morphologies of neurons and synapses in the temporal lobe by transmission electron microscopy (TEM). Our results showed that rats exposed to airport noise of 80 dB had significantly lower line crossing number (P<0.05) and significantly longer center area duration (P<0.05) than control animals. After 29 d of airport noise exposure, the concentration of plasma NE of exposed rats was significantly higher than that of the control group (P<0.05). We also determined that the neuron and synapsis of the temporal lobe of rats showed signs of damage after aircraft noise of 80 dB exposure for 65 d. In conclusion, exposing rats to long-term aircraft noise affects their behaviors, plasma NE levels, and cell morphology of the temporal lobe. PMID:22135145

  1. Sensorimotor Encoding by Synchronous Neural Ensemble Activity at Multiple Levels of the Somatosensory System

    NASA Astrophysics Data System (ADS)

    Nocolelis, Miguel A. L.; Baccala, Luiz A.; Lin, Rick C. S.; Chapin, John K.

    1995-06-01

    Neural ensemble processing of sensorimotor information during behavior was investigated by simultaneously recording up to 48 single neurons at multiple relays of the rat trigeminal somatosensory system. Cortical, thalamic, and brainstem neurons exhibited widespread 7- to 12-hertz synchronous oscillations, which began during attentive immobility and reliably predicted the imminent onset of rhythmic whisker twitching. Each oscillatory cycle began as a traveling wave of neural activity in the cortex that then spread to the thalamus. Just before the onset of rhythmic whisker twitching, the oscillations spread to the spinal trigeminal brainstem complex. Thereafter, the oscillations at all levels were synchronous with whisker protraction. Neural structures manifesting these rhythms also exhibited distributed spatiotemporal patterns of neuronal ensemble activity in response to tactile stimulation. Thus, multilevel synchronous activity in this system may encode not only sensory information but also the onset and temporal domain of tactile exploratory movements.

  2. Multiple Level Crowding: Crowding at the Object Parts Level and at the Object Configural level.

    PubMed

    Kimchi, Ruth; Pirkner, Yossef

    2015-01-01

    In crowding, identification of a peripheral target in the presence of nearby flankers is worse than when the target appears alone. Prevailing theories hold that crowding occurs because of integration or "pooling" of low-level features at a single, relatively early stage of visual processing. Recent studies suggest that crowding can occur also between high-level object representations. The most relevant findings come from studies with faces and may be specific to faces. We examined whether crowding can occur at the object configural level in addition to part-level crowding, using nonface objects. Target (a disconnected square or diamond made of four elements) identification was measured at varying eccentricities. The flankers were similar either to the target parts or to the target configuration. The results showed crowding in both cases: Flankers interfered with target identification such that identification accuracy decreased with an increase in eccentricity, and no interference was observed at the fovea. Crowding by object parts, however, was weaker and had smaller spatial extent than crowding by object configurations; we related this finding to the relationship between crowding and perceptual organization. These results provide strong evidence that crowding occurs not only between object parts but also between configural representations of objects. PMID:26562896

  3. Exploring multiple intelligences theory at a community college level

    NASA Astrophysics Data System (ADS)

    Berkemeier, Ginny Y. Hew

    The publication of "Frames of mind: The theory in practice", (Gardner, 1983) has been used by educators in a variety of ways to make teaching and learning more meaningful. However, little attention has been focused on the MI teaching and learning of science at the higher education level. Consequently, the purpose of this study was four fold. The first purpose was to investigate adult learning through Multiple Intelligence Theory (MI) at the community college level. The second purpose was to determine where there were any differences among students in their perceived MI with regard to age and gender. The third purpose was to investigate the relationship between perceived and tested MI strength with regard to science and non-science courses. The fourth purpose was to determine which MI teaching value relates best with science and non-science courses. Study participants were enrolled in science courses from a Midwestern community college, Ozarks Technical Community College (OTC). The research methodology of this research study consisted of a combination of quantitative analysis; using an inventory and qualitative analysis; through group interviews. Many positive outcomes resulted from the study in areas such as the relationships between tested MI and perceived MI, student learning in science and non-science courses, and their relationships to age and gender. This study suggested the need for a variety of education and curriculum reform that should start with students' attitudes instead of classroom instruction or methods of teaching.

  4. Multi-temporal, high spatial resolution water level monitoring of the Everglades

    NASA Astrophysics Data System (ADS)

    Hong, S.; Wdowinski, S.; Kim, S.

    2008-05-01

    Water level information in South Florida's Everglades is very important for understanding the hydrology of this fragile ecosystem. Currently water levels are determined by a dense stage (water level) network providing high spatial resolution observation. However, because there are a finite number of stage stations in Everglades, water levels in areas located between stage stations can only be estimated by interpolation. Space-borne Interferometric Synthetic Aperture Radar (InSAR) techniques were successfully used to detect high spatial resolution (20-50 meter pixel resolution) water level changes in the Everglades and other wetlands. However, the InSAR observations are relative, providing measure of water level changes (not absolute). In this study we presents a new InSAR technique which enables to estimate a time series of absolute water levels using radar observations acquired successively over the Everglades. In this preliminary stage, we limit our study to Water Conservation Area 1 (WCA1), which is a managed area located in the northern section of the Everglades. The main advantage of the new technique is the reconstruction of absolute water level information instead of previous approaches calculating only relative water level changes. The new technique is called Small Temporal Baseline Subset (STBAS), which utilizes highly coherent interferometric phases obtained only with relatively short time difference between two SAR acquisitions (e.g. 24 or 48 recurrence periods in Radarsat-1 SAR system). The observed interferometric observations have to be calibrated with ground truth data as the reference wetland sheet flow vary daily. We use daily stage data measured at 13 stage stations in WCA1 to calibrate the space-based observations. This information is integrated using the Singular Value Decomposition (SVD) method to generate a time series of absolute water levels. Our calibration-validation study shows a very good fit to the stage data. The correlation

  5. Temporal Synchronization Analysis for Improving Regression Modeling of Fecal Indicator Bacteria Levels

    EPA Science Inventory

    Multiple linear regression models are often used to predict levels of fecal indicator bacteria (FIB) in recreational swimming waters based on independent variables (IVs) such as meteorologic, hydrodynamic, and water-quality measures. The IVs used for these analyses are traditiona...

  6. Visualizing Tensor Normal Distributions at Multiple Levels of Detail.

    PubMed

    Abbasloo, Amin; Wiens, Vitalis; Hermann, Max; Schultz, Thomas

    2016-01-01

    Despite the widely recognized importance of symmetric second order tensor fields in medicine and engineering, the visualization of data uncertainty in tensor fields is still in its infancy. A recently proposed tensorial normal distribution, involving a fourth order covariance tensor, provides a mathematical description of how different aspects of the tensor field, such as trace, anisotropy, or orientation, vary and covary at each point. However, this wealth of information is far too rich for a human analyst to take in at a single glance, and no suitable visualization tools are available. We propose a novel approach that facilitates visual analysis of tensor covariance at multiple levels of detail. We start with a visual abstraction that uses slice views and direct volume rendering to indicate large-scale changes in the covariance structure, and locations with high overall variance. We then provide tools for interactive exploration, making it possible to drill down into different types of variability, such as in shape or orientation. Finally, we allow the analyst to focus on specific locations of the field, and provide tensor glyph animations and overlays that intuitively depict confidence intervals at those points. Our system is demonstrated by investigating the effects of measurement noise on diffusion tensor MRI, and by analyzing two ensembles of stress tensor fields from solid mechanics. PMID:26529741

  7. Spatial and temporal genetic structure at the fourth trophic level in a fragmented landscape.

    PubMed

    Nair, Abhilash; Fountain, Toby; Ikonen, Suvi; Ojanen, Sami P; van Nouhuys, Saskya

    2016-05-25

    A fragmented habitat becomes increasingly fragmented for species at higher trophic levels, such as parasitoids. To persist, these species are expected to possess life-history traits, such as high dispersal, that facilitate their ability to use resources that become scarce in fragmented landscapes. If a specialized parasitoid disperses widely to take advantage of a sparse host, then the parasitoid population should have lower genetic structure than the host. We investigated the temporal and spatial genetic structure of a hyperparasitoid (fourth trophic level) in a fragmented landscape over 50 × 70 km, using microsatellite markers, and compared it with the known structures of its host parasitoid, and the butterfly host which lives as a classic metapopulation. We found that population genetic structure decreases with increasing trophic level. The hyperparasitoid has fewer genetic clusters (K = 4), than its host parasitoid (K = 15), which in turn is less structured than the host butterfly (K = 27). The genetic structure of the hyperparasitoid also shows temporal variation, with genetic differentiation increasing due to reduction of the population size, which reduces the effective population size. Overall, our study confirms the idea that specialized species must be dispersive to use a fragmented host resource, but that this adaptation has limits. PMID:27226470

  8. Effects of ACL Reconstructive Surgery on Temporal Variations of Cytokine Levels in Synovial Fluid

    PubMed Central

    Bigoni, Marco; Gandolla, Marta; Sacerdote, Paola; Piatti, Massimiliano; Castelnuovo, Alberto; Franchi, Silvia; Gorla, Massimo; Munegato, Daniele; Gaddi, Diego; Pedrocchi, Alessandra; Omeljaniuk, Robert J.; Locatelli, Vittorio; Torsello, Antonio

    2016-01-01

    Anterior cruciate ligament (ACL) reconstruction restores knee stability but does not reduce the incidence of posttraumatic osteoarthritis induced by inflammatory cytokines. The aim of this research was to longitudinally measure IL-1β, IL-6, IL-8, IL-10, and TNF-α levels in patients subjected to ACL reconstruction using bone-patellar tendon-bone graft. Synovial fluid was collected within 24–72 hours of ACL rupture (acute), 1 month after injury immediately prior to surgery (presurgery), and 1 month thereafter (postsurgery). For comparison, a “control” group consisted of individuals presenting chronic ACL tears. Our results indicate that levels of IL-6, IL-8, and IL-10 vary significantly over time in reconstruction patients. In the acute phase, the levels of these cytokines in reconstruction patients were significantly greater than those in controls. In the presurgery phase, cytokine levels in reconstruction patients were reduced and comparable with those in controls. Finally, cytokine levels increased again with respect to control group in the postsurgery phase. The levels of IL-1β and TNF-α showed no temporal variation. Our data show that the history of an ACL injury, including trauma and reconstruction, has a significant impact on levels of IL-6, IL-8, and IL-10 in synovial fluid but does not affect levels of TNF-α and IL-1β. PMID:27313403

  9. Multiple routes to memory: distinct medial temporal lobe processes build item and source memories.

    PubMed

    Davachi, Lila; Mitchell, Jason P; Wagner, Anthony D

    2003-02-18

    A central function of memory is to permit an organism to distinguish between stimuli that have been previously encountered and those that are novel. Although the medial temporal lobe (which includes the hippocampus and surrounding perirhinal, parahippocampal, and entorhinal cortices) is known to be crucial for recognition memory, controversy remains regarding how the specific subregions within the medial temporal lobe contribute to recognition. We used event-related functional MRI to examine the relation between activation in distinct medial temporal lobe subregions during memory formation and the ability (i) to later recognize an item as previously encountered (item recognition) and (ii) to later recollect specific contextual details about the prior encounter (source recollection). Encoding activation in hippocampus and in posterior parahippocampal cortex predicted later source recollection, but was uncorrelated with item recognition. In contrast, encoding activation in perirhinal cortex predicted later item recognition, but not subsequent source recollection. These outcomes suggest that the subregions within the medial temporal lobe subserve distinct, but complementary, learning mechanisms. PMID:12578977

  10. Ground motion measurement in the lake Mead (Nevada, USA) area by temporal analysis of multiple interferograms.

    NASA Astrophysics Data System (ADS)

    Cavalie, O.; Doin, M.; Lasserre, C.; Briole, P.

    2004-12-01

    SAR interferometry has proven to be a reliable method for detecting small displacements due to ground subsidence. In this study, we propose to measure ground motion around the lake Mead (Nevada, USA) using InSAR. This artificial lake has been filled with water in 1935. An earlier studie, based on levelling measurements, has shown that the lake impoundement has induced a subsidence of 17 centimeters (Kaufmann et al., 2000). This relaxation process is analogous to the postglacial rebound, but at a smaller scale. To quantify the deformation and constrain the crust and mantle rheological parameters in the lake area, we have analysed multiple interferograms (245) based on 45 ERS images between 1992 and 2001. The interferometric phase contains information about deformation occurring between two satellite passes, as well as satellite orbits errors, topographic, and atmospheric artefacts. The topographic signature is removed using the 3-arc seconds SRTM data. To correct for orbital errors, we remove a best fitting linear ramp. Atmospheric artefact, in our interferograms, are mainly due to the variation of water vapor vertical stratification between the two passes. This results in a interferometric phase correlation with altitude which we remove by minimization. These corrections are then refined through an iterative procedure and validated using data from global atmospheric models. Corrected interferograms are then inverted to solve for deformation using a method based on the large spatial coverage of coherent pixels, allowing to strengthen the signal to noise ratio (Schmidt and Burgmann, 2003). This data inversion provides a time series of the expected deformation in the lake Mead area. The analysis of the deformation evolution during the period covered by the ERS satellites (1992-2001) shows a correlation between the vertical motion and the water level changes. So, we observe a subsidence of up to 1.5 cm between 1996 and 1998, followed by an uplift due to the drop of the

  11. Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels.

    PubMed

    Baselga, Andrés; Fujisawa, Tomochika; Crampton-Platt, Alexandra; Bergsten, Johannes; Foster, Peter G; Monaghan, Michael T; Vogler, Alfried P

    2013-01-01

    A correlation of species and genetic diversity has been proposed but not uniformly supported. Large-scale DNA barcoding provides qualitatively novel data to test for correlations across hierarchical levels (genes, genealogies and species), and may help to unveil the underlying processes. Here we analyse sequence variation in communities of aquatic beetles across Europe (>5,000 individuals) to test for self-similarity of beta diversity patterns at multiple hierarchical levels. We show that community similarity at all levels decreases exponentially with geographic distance, and initial similarity is correlated with the lineage age, consistent with a molecular clock. Log-log correlations between lineage age, number of lineages, and range sizes, reveal a fractal geometry in time and space, indicating a spatio-temporal continuum of biodiversity across scales. Simulations show that these findings mirror dispersal-constrained models of haplotype distributions. These novel macroecological patterns may be explained by neutral evolutionary processes, acting continuously over time to produce multi-scale regularities of biodiversity. PMID:23695686

  12. Controlling periodontal bone levels with multiple LED irradiations.

    PubMed

    Chang, Po-Chun; Wang, Chen-Ying; Chong, Li Yen

    2015-02-01

    Because a single exposure to light-emitting diode (LED) irradiation at 660 nm only demonstrated a 3-day biostimulatory effect in recovering periodontal bone level (PBL), this study sought to evaluate whether the periodontal effect could be extended through the use of multiple LED irradiations. Experimental periodontitis was developed unilaterally in 48 Sprague-Dawley rats after the placement of a silk ligature plus Porphyromonas gingivalis lipopolysaccharide injections. The animals were divided into four groups (no irradiation, a single irradiation, or two or three irradiations per week) and exposed to LED light irradiation at a wavelength of 660 ± 25 nm and energy density of 10 J/cm(2) after debridement and detoxification. The animals were euthanized after 7 or 14 days, and the effect of irradiation was evaluated using micro-computed tomography and histology. By day 7, PBL was significantly reduced (p < 0.05), with significantly reduced inflammation (p < 0.05) and gingival hyperplasia (p < 0.001), in the animals receiving three irradiations per week. At day 14, the reduction in gingival hyperplasia was still significant (p < 0.05), and collagen matrix deposition and realignment appeared to be accelerated in the animals receiving three irradiations per week, despite a lack of significant difference in PBL. The treatment regimen receiving three LED light irradiations per week apparently extended the effects in reducing PBL and inflammation to 7 days. The inclusion of additional inflammation control measures or the addition of bioactive signals to mediate the repairing process is necessary to maintain long-term periodontal stability. PMID:23933707

  13. The peripheral olfactory code in Drosophila larvae contains temporal information and is robust over multiple timescales.

    PubMed

    Grillet, Micheline; Campagner, Dario; Petersen, Rasmus; McCrohan, Catherine; Cobb, Matthew

    2016-05-25

    We studied the electrophysiological activity of two classes of Drosophila melanogaster larval olfactory sensory neurons (OSNs), Or24a and Or74a, in response to 1 s stimulation with butanol, octanol, 2-heptanone, and propyl acetate. Each odour/OSN combination produced unique responses in terms of spike count and temporal profile. We used a classifier algorithm to explore the information content of OSN activity, and showed that as well as spike count, the activity of these OSNs included temporal information that enabled the classifier to accurately identify odours. The responses of OSNs during continuous odour exposure (5 and 20 min) showed that both types of neuron continued to respond, with no complete adaptation, and with no change to their ability to encode temporal information. Finally, we exposed larvae to octanol for 3 days and found only minor quantitative changes in OSN response to odours, indicating that the larval peripheral code is robust when faced with long-term exposure to odours, such as would be found in a natural context. PMID:27194701

  14. The influence of multiple temporal memories in the peak-interval procedure.

    PubMed

    Wilson, A George; Matell, Matthew S; Crystal, Jonathon D

    2015-06-01

    Memories for when an event has occurred are used to anticipate future occurrences of the event, but what happens when the event is equally likely to occur at two different times? In this study, one group of rats was always reinforced at 21 s on the peak-interval procedure (21-only group), whereas another group of rats was reinforced at either 8 or 21 s, which varied daily (8-21 group). At the beginning of each session, the behavior of the 8-21 group largely lacked temporal control, but by the end of the session, temporal control was reestablished. When both groups were reinforced at 21 s, the patterns of responding were indistinguishable after subjects in the 8-21 group had experienced 13 reinforcement trials. Finally, the reinforcement times of previous sessions affected the 8-21 group, such that subjects were biased depending on the reinforcement time of the prior session. These results show that when the reinforcement time is initially ambiguous, rats respond in a way that combines their expectations of both possibilities; then they incrementally adjust their responding as they receive more information, but still information from prior sessions biases their initial expectation for the reinforcement time. Combined, these results imply that rats are sensitive to the age of encoded temporal memories in an environment in which the reinforcement time is variable. How these results inform the scalar expectancy theory, the currently accepted model of interval-timing behavior, is discussed. PMID:25731983

  15. The influence of multiple temporal memories in the peak-interval procedure

    PubMed Central

    Wilson, A. George; Matell, Matthew S.; Crystal, Jonathon D.

    2015-01-01

    Memories for when an event has occurred are used to anticipate future occurrences of the event, but what happens when the event is equally likely to occur at two different times? In this study, one group of rats was always reinforced at 21 sec on the peak interval procedure (21-only group), whereas another group of rats was reinforced at either 8 or 21 sec, varying daily (8–21 group). At the beginning of each session, the behavior of the 8–21 group largely lacked temporal control, but by the end of the session, temporal control was re-established. When both groups were reinforced at 21 seconds, the pattern of responding was indistinguishable after subjects in the 8–21 group experienced 13 reinforcement trials. Lastly, the reinforcement time of previous sessions affected the 8–21 group, such that subjects were biased depending on the reinforcement time of the prior session. These results show that when the reinforcement time is initially ambiguous, rats respond in a way that combines their expectation of both possibilities, incrementally adjust their responding as they receive more information, but still use information from prior sessions to bias their initial expectation for the reinforcement time. Combined these results imply that rats are sensitive to the age of encoded temporal memories in an environment where the reinforcement time is variable. How these results inform the scalar expectancy theory, the currently accepted model of interval timing behavior, is discussed. PMID:25731983

  16. The peripheral olfactory code in Drosophila larvae contains temporal information and is robust over multiple timescales

    PubMed Central

    Grillet, Micheline; Campagner, Dario; Petersen, Rasmus; McCrohan, Catherine

    2016-01-01

    We studied the electrophysiological activity of two classes of Drosophila melanogaster larval olfactory sensory neurons (OSNs), Or24a and Or74a, in response to 1 s stimulation with butanol, octanol, 2-heptanone, and propyl acetate. Each odour/OSN combination produced unique responses in terms of spike count and temporal profile. We used a classifier algorithm to explore the information content of OSN activity, and showed that as well as spike count, the activity of these OSNs included temporal information that enabled the classifier to accurately identify odours. The responses of OSNs during continuous odour exposure (5 and 20 min) showed that both types of neuron continued to respond, with no complete adaptation, and with no change to their ability to encode temporal information. Finally, we exposed larvae to octanol for 3 days and found only minor quantitative changes in OSN response to odours, indicating that the larval peripheral code is robust when faced with long-term exposure to odours, such as would be found in a natural context. PMID:27194701

  17. Sorting photon wave packets using temporal-mode interferometry based on multiple-stage quantum frequency conversion

    NASA Astrophysics Data System (ADS)

    Reddy, D. V.; Raymer, M. G.; McKinstrie, C. J.

    2015-01-01

    All classical and quantum technologies that encode in and retrieve information from optical fields rely on the ability to selectively manipulate orthogonal field modes of light. Such manipulation can be achieved with high selectivity for polarization modes and transverse-spatial modes. For the time-frequency degree of freedom, this could efficiently be achieved for a limited choice of approximately orthogonal modes, i.e., nonoverlapping bins in time or frequency. We recently proposed a method that surmounts the selectivity barrier for sorting arbitrary orthogonal temporal modes [Opt. Lett. 39, 2924 (2014)., 10.1364/OL.39.002924] using cascaded interferometric quantum frequency conversion in nonlinear optical media. We call this method temporal-mode interferometry, as it has a close resemblance to the well-known separated-fields atomic interferometry method introduced by Ramsey. The method has important implications for quantum memories, quantum dense coding, quantum teleportation, and quantum key distribution. Here we explore the inner workings of the method in detail, and extend it to multiple stages with a concurrent asymptotic convergence of temporal-mode selectivity to unity. We also complete our analysis of pump-chirp compensation to counter pump-induced nonlinear phase modulation in four-wave mixing implementations.

  18. Quantitative phase microscopy: automated background leveling techniques and smart temporal phase unwrapping.

    PubMed

    Goldstein, Goldie; Creath, Katherine

    2015-06-01

    In order for time-dynamic quantitative phase microscopy to yield meaningful data to scientists, raw phase measurements must be converted to sequential time series that are consistently phase unwrapped with minimal residual background shape. Beyond the initial phase unwrapping, additional steps must be taken to convert the phase to time-meaningful data sequences. This consists of two major operations both outlined in this paper and shown to operate robustly on biological datasets. An automated background leveling procedure is introduced that consistently removes background shape and minimizes mean background phase value fluctuations. By creating a background phase value that is stable over time, the phase values of features of interest can be examined as a function of time to draw biologically meaningful conclusions. Residual differences between sequential frames of data can be present due to inconsistent phase unwrapping, causing localized regions to have phase values at similar object locations inconsistently changed by large values between frames, not corresponding to physical changes in the sample being observed. This is overcome by introducing a new method, referred to as smart temporal unwrapping that temporally unwraps and filters the phase data such that small motion between frames is accounted for and phase data are unwrapped consistently between frames. The combination of these methods results in the creation of phase data that is stable over time by minimizing errors introduced within the processing of the raw data. PMID:26192681

  19. Multiple-Parameter Estimation Method Based on Spatio-Temporal 2-D Processing for Bistatic MIMO Radar.

    PubMed

    Yang, Shouguo; Li, Yong; Zhang, Kunhui; Tang, Weiping

    2015-01-01

    A novel spatio-temporal 2-dimensional (2-D) processing method that can jointly estimate the transmitting-receiving azimuth and Doppler frequency for bistatic multiple-input multiple-output (MIMO) radar in the presence of spatial colored noise and an unknown number of targets is proposed. In the temporal domain, the cross-correlation of the matched filters' outputs for different time-delay sampling is used to eliminate the spatial colored noise. In the spatial domain, the proposed method uses a diagonal loading method and subspace theory to estimate the direction of departure (DOD) and direction of arrival (DOA), and the Doppler frequency can then be accurately estimated through the estimation of the DOD and DOA. By skipping target number estimation and the eigenvalue decomposition (EVD) of the data covariance matrix estimation and only requiring a one-dimensional search, the proposed method achieves low computational complexity. Furthermore, the proposed method is suitable for bistatic MIMO radar with an arbitrary transmitted and received geometrical configuration. The correction and efficiency of the proposed method are verified by computer simulation results. PMID:26694385

  20. Multiple-Parameter Estimation Method Based on Spatio-Temporal 2-D Processing for Bistatic MIMO Radar

    PubMed Central

    Yang, Shouguo; Li, Yong; Zhang, Kunhui; Tang, Weiping

    2015-01-01

    A novel spatio-temporal 2-dimensional (2-D) processing method that can jointly estimate the transmitting-receiving azimuth and Doppler frequency for bistatic multiple-input multiple-output (MIMO) radar in the presence of spatial colored noise and an unknown number of targets is proposed. In the temporal domain, the cross-correlation of the matched filters’ outputs for different time-delay sampling is used to eliminate the spatial colored noise. In the spatial domain, the proposed method uses a diagonal loading method and subspace theory to estimate the direction of departure (DOD) and direction of arrival (DOA), and the Doppler frequency can then be accurately estimated through the estimation of the DOD and DOA. By skipping target number estimation and the eigenvalue decomposition (EVD) of the data covariance matrix estimation and only requiring a one-dimensional search, the proposed method achieves low computational complexity. Furthermore, the proposed method is suitable for bistatic MIMO radar with an arbitrary transmitted and received geometrical configuration. The correction and efficiency of the proposed method are verified by computer simulation results. PMID:26694385

  1. Unsupervised spatio-temporal detection of brain functional activation based on hidden Markov multiple event sequence models

    NASA Astrophysics Data System (ADS)

    Faisan, Sylvain; Thoraval, Laurent; Armspach, Jean-Paul; Heitz, Fabrice; Foucher, Jack

    2005-04-01

    This paper presents a novel, completely unsupervised fMRI brain mapping approach that addresses the three problems of hemodynamic response function (HRF) shape variability, neural event timing, and fMRI response linearity. To make it robust, the method takes into account spatial and temporal information directly into the core of the activation detection process. In practice, activation detection is formulated in terms of temporal alignment between the sequence of hemodynamic response onsets (HROs) detected in the fMRI signal at υ and in the spatial neighbourhood of υ, and the sequence of "off-on" transitions observed in the input blocked stimulation paradigm (when considering epoch-related fMRI data), or the sequence of stimuli of the event-based paradigm (when considering event-related fMRI data). This multiple event sequence alignment problem, which comes under multisensor data fusion, is solved within the probabilistic framework of hidden Markov multiple event sequence models (HMMESMs), a special class of hidden Markov models. Results obtained on real and synthetic data compete with those obtained with the popular statistical parametric mapping (SPM) approach, but without necessitating any prior definition of the expected activation patterns, the HMMESM mapping approach being completely unsupervised.

  2. A test of multiple correlation temporal window characteristic of non-Markov processes

    NASA Astrophysics Data System (ADS)

    Arecchi, F. T.; Farini, A.; Megna, N.

    2016-03-01

    We introduce a sensitive test of memory effects in successive events. The test consists of a combination K of binary correlations at successive times. K decays monotonically from K = 1 for uncorrelated events as a Markov process. For a monotonic memory fading, K<1 always. Here we report evidence of a K>1 temporal window in cognitive tasks consisting of the visual identification of the front face of the Necker cube after a previous presentation of the same. We speculate that memory effects provide a temporal window with K>1 and this experiment could be a possible first step towards a better comprehension of this phenomenon. The K>1 behaviour is maximal at an inter-measurement time τ around 2s with inter-subject differences. The K>1 persists over a time window of 1s around τ; outside this window the K<1 behaviour is recovered. The universal occurrence of a K>1 window in pairs of successive perceptions suggests that, at variance with single visual stimuli eliciting a suitable response, a pair of stimuli shortly separated in time displays mutual correlations.

  3. Visual evoked potentials to multiple temporal frequencies. Use in the differential diagnosis of optic neuropathy.

    PubMed

    Bobak, P; Friedman, R; Brigell, M; Goodwin, J; Anderson, R

    1988-07-01

    The usefulness of the visual evoked potential (VEP) in differential diagnosis increases when stimulus parameters such as check size and grating orientation are varied. In this study we varied the stimulation frequency. Temporal frequency-specific abnormalities were compared in three patient categories, including retrobulbar optic neuritis (eight patients), pseudotumor cerebri (11 patients), and thyroid eye disease (seven patients). All patients had minimal clinical evidence of optic nerve damage when tested. A 2.3 cycle-per-degree sinusoidal grating of 55% contrast was phase reversed at either 1 or 4 Hz. The P1 latency of the 1-Hz data and the phase at 8 Hz, the second harmonic of the 4-Hz input frequency, were measured. In retrobulbar neuritis, latency (phase) was severely abnormal at both temporal frequencies. In thyroid eye disease, VEP phase was abnormal at 8 Hz while the P1 latency was normal at 1 Hz. The P1 latency and phase were normal in most cases of pseudotumor cerebri. The results suggest differing mechanisms for damage in compressive vs primary demyelinating neuropathies. PMID:3390057

  4. Not FLEXible enough: Exploring the temporal dynamics of attentional reallocations with the multiple object tracking paradigm.

    PubMed

    Meyerhoff, Hauke S; Papenmeier, Frank; Jahn, Georg; Huff, Markus

    2016-06-01

    The dynamic environment of human observers requires continuous reallocations of visual attention to compensate for location changes of the attended objects. Particularly, situations with reduced spatial distance between targets and other objects in the display are crucial for keeping track of the target objects. In the present experiments, we explored how the temporal dynamics of such moments of reduced spacing affects the reallocation of visual attention. We asked participants to track 4 targets among indistinguishable distractors. Hereby, we manipulated whether target and distractor objects moved at a constant speed or whether their actual speed followed a sine wave profile. The variable speed oscillated around the constant speed thus maintaining average speed as well as traveled distance and average spatial proximity. We observed inferior tracking performance with variable speed profiles relative to constant speed profiles (Experiments 1a and 1b). When we increased the number of pairs of targets and distractors moving with a variable speed profile (Experiment 2), performance declined continuously. Remarkably, tracking performance also declined when only distractors moved at variable speeds, suggesting that the dynamic changes in interobject spacing rather than the variable speed impairs tracking (Experiment 3). In sum, our results provide evidence for a flexible allocation of the attentional resource toward targets suffering spatial interference by demonstrating the temporal constraints of the reallocation process. (PsycINFO Database Record PMID:26689311

  5. Spatial-temporal variations in carbon dioxide levels in Ibadan, Nigeria.

    PubMed

    Ana, Godson R; Ojelabi, Peju; Shendell, Derek G

    2015-01-01

    Growing evidence suggests how global background levels of atmospheric carbon dioxide (CO2) are increasing and this impacts environmental quality and human and ecological health. Data from less developed countries are sparse. We determined spatial and temporal variations in concentrations of CO2 in selected locations in Ibadan, Nigeria with identifiable prominent outdoor sources. Activity driven areas in north and south-west areas were identified and marked with a global positioning system. Waste management practices and activities generating CO2 were documented and described using a technician observation checklist. CO2 levels were measured using a portable TELAIRE 7001 attached to HOBO U12 data loggers across seasons. Mean CO2 levels were compared over seasons, i.e. rainy season months and the dry season months. While CO2 levels recorded outdoors in study areas were comparable to available international data, routine monitoring is recommended to further characterize concurrent pollutants in fossil fuel combustion emissions with known deleterious health effects. PMID:25075546

  6. Increasing Level of Aspiration by Matching Construal Level and Temporal Distance: The Motivating Effects of Contemplating "How" Now and "Why" Later

    ERIC Educational Resources Information Center

    Fessel, Florian

    2009-01-01

    Individuals trying to achieve goals often set a level of aspiration ahead of time, that is, they determine which specific outcomes in goal pursuit they desire to obtain. In the research contained in the current dissertation, I demonstrate that temporal distance and construal level have diametrically opposing effects on level of aspiration such…

  7. Temporal buildup of electromagnetically induced transparency and absorption resonances in degenerate two-level transitions

    NASA Astrophysics Data System (ADS)

    Valente, P.; Failache, H.; Lezama, A.

    2003-01-01

    The temporal evolution of electromagnetically induced transparency (EIT) and absorption (EIA) coherence resonances in pump-probe spectroscopy of degenerate two-level atomic transition is studied for light intensities below saturation. Analytical expressions for the transient absorption spectra are given for simple model systems and a model for the calculation of the time-dependent response of realistic atomic transitions, where the Zeeman degeneracy is fully accounted for, is presented. EIT and EIA resonances have a similar (opposite sign) time-dependent line shape, however, the EIA evolution is slower and thus narrower lines are observed for long interaction time. Qualitative agreement with the theoretical predictions is obtained for the transient probe absorption on the 85Rb D2 line in an atomic beam experiment.

  8. A possible spatial and temporal cluster of multiple sclerosis in the town of Linguaglossa, Sicily.

    PubMed

    Nicoletti, Alessandra; Lo Fermo, Salvatore; Reggio, Ester; Tarantello, Rosangela; Liberto, Alfredo; Le Pira, Francesco; Patti, Francesco; Reggio, Arturo

    2005-08-01

    We carried out an epidemiological survey to determine prevalence and incidence of multiple sclerosis in the little town of Linguaglossa in the Province of Catania. We calculated prevalence rate as point prevalence at 1 January 2001 and incidence during 1991-2000. We studied the frequency of multiple sclerosis in the community of Linguaglossa in a population of 5,422 inhabitants in the 2001 census. The primary sources for the case ascertainment were the general practitioners of Linguaglossa, the local Italian Multiple Sclerosis Association and the neurological departments, Multiple Sclerosis Centers and private neurologists of the province of Catania. We considered as prevalent and incident cases all patients who satisfied the Poser's diagnostic criteria. We detected 11 patients with multiple sclerosis who had had the onset of disease on prevalent day (P.D.). The onset-adjusted prevalence rate was 203/100,000 (95% CI 107-352). Prevalence was higher in women (247/100,000) than in men (154/100,000). From 1991 to 2000, 10 subjects with MS had clinical onset of disease. The mean annual incidence risk was 18.2/100,000 (C. I. 95 % 5.9-42.5). Conversely in the same population prevalence on 1 January 1991 was 37/100,000 while the onset adjusted annual incidence risk during the previous decade (1981-1991) was 3.6/100,000. Prevalence and incidence rates of MS during the last decade in the little town of Linguaglossa are higher than those found in the same area during the previous ten years and also than those reported in other Sicilian and Italian surveys suggesting a possible cluster of MS. PMID:15789132

  9. The Dynamic Hyporheic Zone: Variability of Groundwater-Surface Water Exchange at Multiple Temporal Scales

    NASA Astrophysics Data System (ADS)

    Binley, A. M.; Dudley-Southern, M. J.

    2014-12-01

    The pathways of exchange of surface water and groundwater can have a significant influence on the delivery of nutrient-rich groundwater to streams. Many studies have revealed how the spatial variability of physical properties (sediment permeability, bedform structures, etc.) at the interface of groundwater and surface water can impact on flow pathways and residence times of hyporheic exchange flow. Here we explore the temporal variability of flow pathways at this interface. We focus on observations made on a study reach of the River Leith, UK but also provide evidence of dynamic exchanges at a number of other study sites. Under baseflow conditions, the study reach of the River Leith shows a predominance of upwelling of groundwater to the river, and in some sections of the reach a significant groundwater discharge zone in evident. However, from observations of piezometric heads made over a two year study period, repeated reversal of flow direction was observed during storm events. By deploying novel miniature electrode sensors in the river bed we were able to monitor the migration of surface water during these events. Penetration of river water to depths of 30cm was observed during monitored events, which support the reported reversal of hydraulic gradients. We, therefore, observed event-driven hyporheic exchange flow. The duration and frequency of such events may have significant impact on the biogeochemistry of shallow river bed sediments within this reach. Furthermore, temporal variability of exchange is not limited to such events: changes in regional groundwater flow pathways over longer time scales may have a significant impact on the location of localised upwelling; at much shorter timescales we see evidence of diurnal fluctuations in hydraulic heads due to evapotranspiration processes. We report on similar observations at companion study sites and discuss implications on the management of water quality in these groundwater fed systems.

  10. Polycyclic aromatic hydrocarbons in air on small spatial and temporal scales - I. Levels and variabilities

    NASA Astrophysics Data System (ADS)

    Lammel, Gerhard; Klánová, Jana; Ilić, Predrag; Kohoutek, Jiří; Gasić, Bojan; Kovacić, Igor; Lakić, Nataša; Radić, Ranka

    2010-12-01

    Polycyclic aromatic hydrocarbons (PAHs) were measured together with inorganic air pollutants at two urban sites and one rural background site in the Banja Luka area, Bosnia and Hercegovina, during 72 h in July 2008 using a high time resolution (5 samples per day) with the aim to study the spatial and temporal variabilities and to explore the significance of averaging effects inherent to 24 h-sampling. Measurement uncertainty was quantified on basis of three independent side-by-side samplers, deployed at one of the sites. PAH abundances in the urban and rural environments differed largely. Levels at the urban sites exceeded the levels at the rural site by >100%. The discrepancy was largely dominated by emission of 3-4 ring PAHs in the city, while 5-6 ring PAHs were more evenly distributed between city sites and the hill site. During the night a higher fraction of the semivolatile PAHs might have been stored in the soil or sorbed to surfaces. PAH patterns were undistinguishable across the three sites. However, concentrations of more particle-associated substances differed significantly between the urban sites than between one of the urban sites and the rural site (3 σ uncertainty). Time-averaging (on a 24 h-basis) would have masked the significant inter-site differences of half of the substances which were found at different levels (on a 4 h-basis).

  11. A typology of household-level adaptation to coastal flooding and its spatio-temporal patterns.

    PubMed

    Koerth, Jana; Vafeidis, Athanasios T; Carretero, Silvina; Sterr, Horst; Hinkel, Jochen

    2014-01-01

    The predicted sea-level rise and changes in storm surge regimes are expected to lead to an increasing risk of flooding in coastal regions. Accommodation can be an alternative to protection in many areas, with household-level adaptation potentially constituting an important element of such a strategy, as it can significantly reduce costs. To date, a systematic typology of household-level adaptation to coastal flooding does not exist. In order to bridge this gap, we conducted a series of quantitative surveys in different coastal areas in Denmark, Germany and Argentina. We applied a cluster analysis in order to categorise the adaptive behaviour of coastal households. Coastal households were found to cluster in four groups that we term: the comprehensives, the theoreticians, the minimalists and the structurals. With the exception of households focusing on the implementation of high-effort structural measures, our results show the affiliation to these groups to follow a specific temporal sequence. At the same time, large differences in category affiliation exist between the study areas. Risk communication tools can utilise our typology to selectively target specific types of households or to ensure that the information needs of all groups are addressed. PMID:25191638

  12. Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality.

    PubMed

    Soliveres, Santiago; van der Plas, Fons; Manning, Peter; Prati, Daniel; Gossner, Martin M; Renner, Swen C; Alt, Fabian; Arndt, Hartmut; Baumgartner, Vanessa; Binkenstein, Julia; Birkhofer, Klaus; Blaser, Stefan; Blüthgen, Nico; Boch, Steffen; Böhm, Stefan; Börschig, Carmen; Buscot, Francois; Diekötter, Tim; Heinze, Johannes; Hölzel, Norbert; Jung, Kirsten; Klaus, Valentin H; Kleinebecker, Till; Klemmer, Sandra; Krauss, Jochen; Lange, Markus; Morris, E Kathryn; Müller, Jörg; Oelmann, Yvonne; Overmann, Jörg; Pašalić, Esther; Rillig, Matthias C; Schaefer, H Martin; Schloter, Michael; Schmitt, Barbara; Schöning, Ingo; Schrumpf, Marion; Sikorski, Johannes; Socher, Stephanie A; Solly, Emily F; Sonnemann, Ilja; Sorkau, Elisabeth; Steckel, Juliane; Steffan-Dewenter, Ingolf; Stempfhuber, Barbara; Tschapka, Marco; Türke, Manfred; Venter, Paul C; Weiner, Christiane N; Weisser, Wolfgang W; Werner, Michael; Westphal, Catrin; Wilcke, Wolfgang; Wolters, Volkmar; Wubet, Tesfaye; Wurst, Susanne; Fischer, Markus; Allan, Eric

    2016-08-25

    Many experiments have shown that loss of biodiversity reduces the capacity of ecosystems to provide the multiple services on which humans depend. However, experiments necessarily simplify the complexity of natural ecosystems and will normally control for other important drivers of ecosystem functioning, such as the environment or land use. In addition, existing studies typically focus on the diversity of single trophic groups, neglecting the fact that biodiversity loss occurs across many taxa and that the functional effects of any trophic group may depend on the abundance and diversity of others. Here we report analysis of the relationships between the species richness and abundance of nine trophic groups, including 4,600 above- and below-ground taxa, and 14 ecosystem services and functions and with their simultaneous provision (or multifunctionality) in 150 grasslands. We show that high species richness in multiple trophic groups (multitrophic richness) had stronger positive effects on ecosystem services than richness in any individual trophic group; this includes plant species richness, the most widely used measure of biodiversity. On average, three trophic groups influenced each ecosystem service, with each trophic group influencing at least one service. Multitrophic richness was particularly beneficial for 'regulating' and 'cultural' services, and for multifunctionality, whereas a change in the total abundance of species or biomass in multiple trophic groups (the multitrophic abundance) positively affected supporting services. Multitrophic richness and abundance drove ecosystem functioning as strongly as abiotic conditions and land-use intensity, extending previous experimental results to real-world ecosystems. Primary producers, herbivorous insects and microbial decomposers seem to be particularly important drivers of ecosystem functioning, as shown by the strong and frequent positive associations of their richness or abundance with multiple ecosystem services

  13. Quantifying the effects of mountain pine beetle infestation on water and biogeochemical cycles at multiple spatial and temporal scales

    NASA Astrophysics Data System (ADS)

    Brooks, P. D.; Harpold, A. A.; Somor, A. J.; Troch, P. A.; Gochis, D. J.; Ewers, B. E.; Pendall, E.; Biederman, J. A.; Reed, D.; Barnard, H. R.; Whitehouse, F.; Aston, T.; Borkhuu, B.

    2010-12-01

    Unprecedented levels of bark beetle infestation over the last decade have radically altered forest structure across millions of hectares of Western U.S. montane environments. The widespread extent of this disturbance presents a major challenge for governments and resource managers who lack a predictive understanding of how water and biogeochemical cycles will respond to this disturbance over various temporal and spatial scales. There is a widespread perception, largely based on hydrological responses to fire or logging, that a reduction in both transpiration and interception following tree death will increase soil water availability and catchment water yield. However, few studies have directly addressed the effects of insect-induced forest decline on water and biogeochemical cycling. We address this knowledge gap using observations and modeling at scales from 100 to 109 m2 across study sites in CO and WY that vary in the intensity and timing of beetle infestation and tree death. Our focus on multiple sites with different levels of impact allows us to address two broad, organizing questions: How do changes in vegetation structure associated with MPB alter the partitioning of energy and water? And How do these changes in energy and water availability affect local to regional scale water and biogeochemical cycles? This presentation will focus primarily on energy balance and water partitioning, providing context for ongoing biogeochemical work. During the growing season, stand-scale transpiration declines rapidly and soil moisture increases following infestation, consistent with streamflow data from regional catchments that shows an increase in baseflow following widespread attack. During the winter and spring, stand scale snow surveys and continuous snow depth sensors suggested that the variability in snow cover decreased as the severity of beetle impact increases, but there were no significant stand-scale differences in snow depth among levels of impact. This is due

  14. Temporal and spatial evolution of grey matter atrophy in primary progressive multiple sclerosis☆

    PubMed Central

    Eshaghi, Arman; Bodini, Benedetta; Ridgway, Gerard R.; García-Lorenzo, Daniel; Tozer, Daniel J.; Sahraian, Mohammad Ali; Thompson, Alan J.; Ciccarelli, Olga

    2014-01-01

    Grey matter (GM) atrophy occurs early in primary progressive MS (PPMS), but it is unknown whether its progression involves different brain regions at different rates, as is seen in other neurodegenerative diseases. We aimed to investigate the temporal and regional evolution of GM volume loss over 5 years and its relationship with disability progression in early PPMS. We studied 36 patients with PPMS within five years from onset and 19 age and gender-matched healthy controls with clinical and imaging assessments at study entry and yearly for 3 years and then at 5 years. Patients were scored on the expanded disability status scale (EDSS) and MS Functional Composite (MSFC) at each time-point. An unbiased longitudinal voxel-based morphometry approach, based on high-dimensional spatial alignment within-subject, was applied to the serial imaging data. The rate of local (voxel-wise) volume change per year was compared between groups and its relationship with clinical outcomes was assessed. Patients deteriorated significantly during the five years follow-up. Patients showed a greater decline of GM volume (p < 0.05, FWE-corrected) bilaterally in the cingulate cortex, thalamus, putamen, precentral gyrus, insula and cerebellum when compared to healthy controls over five years, although the rate of volume loss varied across the brain, and was the fastest in the cingulate cortex. Significant (p < 0.05, FWE-corrected) volume loss was detected in the left insula, left precuneus, and right cingulate cortex in patients at three years, as compared to baseline, whilst the bilateral putamen and the left superior temporal gyrus showed volume loss at five years. In patients, there was a relationship between a higher rate of volume loss in the bilateral cingulate cortex and greater clinical disability, as measured by the MSFC, at five years (Pearson's r = 0.49, p = 0.003). Longitudinal VBM demonstrated that the progression of GM atrophy in PPMS occurs at different rates in

  15. Spatial and temporal variations in coral growth on an inshore turbid reef subjected to multiple disturbances.

    PubMed

    Browne, N K

    2012-06-01

    Coral growth rates (linear extension, density, calcification rates) of three fast-growing corals (Acropora, Montipora, Turbinaria) were studied in situ on Middle Reef, an inshore reef located on the central Great Barrier Reef (GBR), to assess the influence of changing environmental conditions on coral condition and reef growth. Middle Reef is subjected to both local (e.g. high sediment loads) and global (e.g. coral bleaching) disturbance events, usually associated with reduced coral growth. Results indicated, however, that Acropora growth rates (mean linear extension = 6.3 cm/year) were comparable to those measured at similar depths on offshore reefs on the GBR. Montipora linear extension (2.9 cm/year) was greater than estimates available from both clear-water and turbid reefs, and Turbinaria's dense skeleton (1.3 g/cm(3)) may be more resilient to physical damage as ocean pH falls. Coral growth was found to vary between reef habitats due to spatial differences in water motion and sediment dynamics, and temporally with lower calcification rates during the summer months when SSTs (monthly average 29 °C) and rainfall (monthly total >500 mm) were high. In summary, corals on Middle Reef are robust and resilient to their marginal environmental conditions, but are susceptible to anthropogenic disturbances during the summer months. PMID:22391236

  16. Temporal lobe cortical pathology and inhibitory GABA interneuron cell loss are associated with seizures in multiple sclerosis

    PubMed Central

    Nicholas, Richard; Magliozzi, Roberta; Campbell, Graham; Mahad, Don; Reynolds, Richard

    2016-01-01

    Background: Seizures are recognised in multiple sclerosis (MS), but their true incidence and the mechanism by which they are associated with MS is unclear. Objective: The objective of this paper is to determine the lifetime frequency of seizures in the United Kingdom MS Tissue Bank (UKMSTB) population and any pathological features associated with seizures. Methods: We evaluated 255 individuals from the UKMSTB. A subset underwent analysis of cortical thickness, grey matter lesion (GML) (type and number) and cortical neuronal numbers (total and GABAergic). Results: A total of 37/255 patients had seizures (14.5% lifetime incidence); in 47% they were associated with concurrent infection. In those with seizures, death and wheelchair use occurred earlier and in 59% seizures developed after 15 years of disease. Seizures were associated with Type 1 GMLs and reduced cortical thickness in the middle temporal gyrus. Localised selective GABAergic interneuron loss in layers IV and VI was related to GMLs but was not explained by the presence of inflammation or by mitochondrial dysfunction within Type I GMLs. Conclusion: We confirm that seizure frequency rises in MS. Type I GMLs in the temporal lobe underlie a loss of inhibitory interneurons in cortical layers IV and VI and these changes could together with concurrent infection enhance susceptibility to seizures. PMID:25921040

  17. Initial success of native grasses is contingent on multiple interactions among exotic grass competition, temporal priority, rainfall and site effects.

    PubMed

    Young, Truman P; Zefferman, Emily P; Vaughn, Kurt J; Fick, Stephen

    2014-01-01

    Ecological communities are increasingly being recognized as the products of contemporary drivers and historical legacies that are both biotic and abiotic. In an attempt to unravel multiple layers of ecological contingency, we manipulated (i) competition with exotic annual grasses, (ii) the timing of this competition (temporal priority in arrival/seeding times) and (iii) watering (simulated rainfall) in a restoration-style planting of native perennial grasses. In addition, we replicated this experiment simultaneously at three sites in north-central California. Native perennial grasses had 73-99 % less cover when planted with exotic annuals than when planted alone, but this reduction was greatly ameliorated by planting the natives 2 weeks prior to the exotics. In a drought year, irrigation significantly reduced benefits of early planting so that these benefits resembled those observed in a non-drought year. There were significant differences across the three sites (site effects and interactions) in (i) overall native cover, (ii) the response of natives to competition, (iii) the strength of the temporal priority effect and (iv) the degree to which supplemental watering reduced priority effects. These results reveal the strong multi-layered contingency that underlies even relatively simple communities. PMID:25480888

  18. Geographical, spatial, and temporal distributions of multiple indoor air pollutants in four Chinese provinces

    SciTech Connect

    Yinlong Jin; Zheng Zhou; Gongli He

    2005-12-15

    Exposure to indoor air pollution from household energy use depends on fuel, stove, housing characteristics, and stove use behavior. Three important indoor air pollutants - respirable particles (RPM), carbon monoxide (CO), and sulfur dioxide (SO{sub 2}) were monitored for a total of 457 household-days in four poor provinces in China (Gansu, 129 household-days; Guizhou, 127 household-days; Inner Mongolia, 65 household-days; and Shaanxi, 136 household-days), in two time intervals during the heating season to investigate spatial and temporal patterns of pollution. The two provinces where biomass is the primary fuel (Inner Mongolia and Gansu) had the highest RPM concentrations (719 {mu}g/m{sup 3} in the single cooking/living/bedroom in Inner Mongolia in December and 351-661 {mu}g/m{sup 3} in different rooms and months in Gansu); lower RPM concentration were observed in the primarily coal-burning provinces of Guizhou and Shaanxi (202-352 {mu}g/m{sup 3} and 187-361 {mu}g/m{sup 3} in different rooms and months in Guizhou and Shaanxi, respectively). Inner Mongolia and Gansu also had higher CO concentrations. Among the two primarily coal-burning provinces, Guizhou had lower concentrations of CO than Shaanxi. In the two coal-burning provinces, SO{sub 2} concentrations were substantially higher in Shaanxi than in Guizhou. Relative concentrations in different rooms and provinces indicate that in the northern provinces heating is an important source of exposure to indoor pollutants from energy use. Day-to-day variability of concentrations within individual households, although substantial, was smaller than variation across households. The implications of the findings for designing environmental health interventions in each province are discussed. 21 refs., 3 figs., 6 tabs.

  19. Optimal serum 25-hydroxyvitamin D levels for multiple health outcomes.

    PubMed

    Bischoff-Ferrari, Heike A

    2014-01-01

    Recent evidence suggests that vitamin D deficiency has harmful effects on health and that recent vitamin D intake recommendations may be associated with better health outcomes. In this chapter, evidence is summarized from different studies that evaluate threshold levels for serum 25(OH)D levels in relation to bone mineral density (BMD), lower extremity function, dental health, risk of falls, fractures, cancer prevention, incident hypertension and mortality. For all endpoints, levels in the deficient range (< 50 nmol/l; < 20 ng/ml) are associated with no benefit or adverse effects, while the most advantageous serum levels for 25(OH)D appeared to be close to 75 nmol/l (30 ng/ml). An intake of 800 IU (20 microg) of vitamin D3 (cholecalciferol) per day for all adults may bring 97% of the population to level of at least 50 nmol/l and about 50% up to 75 nmol/l. Thus, higher doses of vitamin D than currently recommended are needed to bring most individuals to75 nmol/l. While estimates suggest that 1600 to 2000 IU vitamin D3 per day may successfully and safely achieve this goal, the implications of higher doses for the total adult population need to be addressed in future studies. PMID:25207384

  20. Measuring Science Teachers' Stress Level Triggered by Multiple Stressful Conditions

    ERIC Educational Resources Information Center

    Halim, Lilia; Samsudin, Mohd Ali; Meerah, T. Subahan M.; Osman, Kamisah

    2006-01-01

    The complexity of science teaching requires science teachers to encounter a range of tasks. Some tasks are perceived as stressful while others are not. This study aims to investigate the extent to which different teaching situations lead to different stress levels. It also aims to identify the easiest and most difficult conditions to be regarded…

  1. Deciphering phonemes from syllables in blood oxygenation level-dependent signals in human superior temporal gyrus.

    PubMed

    Zhang, Qingtian; Hu, Xiaolin; Luo, Huan; Li, Jianmin; Zhang, Xiaolu; Zhang, Bo

    2016-03-01

    Linguistic units such as phonemes and syllables are important for speech perception. How the brain encodes these units is not well understood. Many neuroimaging studies have found distinct representations of consonant-vowel syllables that shared one phoneme and differed in the other phoneme (e.g. /ba/ and /da/), but it is unclear whether this discrimination ability is due to the neural coding of phonemes or syllables. We combined functional magnetic resonance imaging with multivariate pattern analysis to explore this question. Subjects listened to nine Mandarin syllables in a consonant-vowel form. We successfully decoded phonemes from the syllables based on the blood oxygenation level-dependent signals in the superior temporal gyrus (STG). Specifically, a classifier trained on the cortical patterns elicited by a set of syllables, which contained two phonemes, could distinguish the cortical patterns elicited by other syllables that contained the two phonemes. The results indicated that phonemes have unique representations in the STG. In addition, there was a categorical effect, i.e. the cortical patterns of consonants were similar, and so were the cortical patterns of vowels. Further analysis showed that phonemes exhibited stronger encoding specificity in the mid-STG than in the anterior STG. PMID:26751256

  2. Sortilin-Mediated Endocytosis Determines Levels of the Fronto-Temporal Dementia Protein, Progranulin

    PubMed Central

    Hu, Fenghua; Padukkavidana, Thihan; Vægter, Christian B.; Brady, Owen A.; Zheng, Yanqiu; Mackenzie, Ian R.; Feldman, Howard H.; Nykjaer, Anders; Strittmatter, Stephen M.

    2010-01-01

    SUMMARY The most common inherited form of Fronto-Temporal Lobar Degeneration (FTLD) known stems from Progranulin (GRN) mutation, and exhibits TDP-43 plus ubiquitin aggregates. Despite the causative role of GRN haploinsufficiency in FTLD-TDP, the neurobiology of this secreted glycoprotein is unclear. Here, we examined PGRN binding to the cell surface. PGRN binds to cortical neurons via its C-terminus, and unbiased expression cloning identifies Sortilin (Sort1) as a binding site. Sort1−/− neurons exhibit reduced PGRN binding. In the CNS, Sortilin is expressed by neurons and PGRN is most strongly expressed by activated microglial cells after injury. Sortilin rapidly endocytoses and delivers PGRN to lysosomes. Mice lacking Sortilin have elevations in brain and serum PGRN levels of 2.5- to 5-fold. The 50% PGRN decrease causative in FTLD-TDP cases is mimicked in GRN+/− mice, and is fully normalized by Sort1 ablation. Sortilin-mediated PGRN endocytosis is likely to play a central role in FTLD-TDP pathophysiology. PMID:21092856

  3. Melatonin in Plants - Diversity of Levels and Multiplicity of Functions.

    PubMed

    Hardeland, Rüdiger

    2016-01-01

    Melatonin has been detected in numerous plant species. A particularly surprising finding concerns the highly divergent levels of melatonin that vary between species, organs and environmental conditions, from a few pg/g to over 20 μg/g, reportedly up to 200 μg/g. Highest values have been determined in oily seeds and in plant organs exposed to high UV radiation. The divergency of melatonin concentrations is discussed under various functional aspects and focused on several open questions. This comprises differences in precursor availability, catabolism, the relative contribution of isoenzymes of the melatonin biosynthetic pathway, and differences in rate limitation by either serotonin N-acetyltransferase or N-acetylserotonin O-methyltransferase. Other differences are related to the remarkable pleiotropy of melatonin, which exhibits properties as a growth regulator and morphogenetic factor, actually debated in terms of auxin-like effects, and as a signaling molecule that modulates pathways of ethylene, abscisic, jasmonic and salicylic acids and is involved in stress tolerance, pathogen defense and delay of senescence. In the context of high light/UV intensities, elevated melatonin levels exceed those required for signaling via stress-related phytohormones and may comprise direct antioxidant and photoprotectant properties, perhaps with a contribution of its oxidatively formed metabolites, such as N (1)-acetyl-N (2)-formyl-5-methoxykynuramine and its secondary products. High melatonin levels in seeds may also serve antioxidative protection and have been shown to promote seed viability and germination capacity. PMID:26925091

  4. How geomorphology and groundwater level affect the spatio-temporal variability of riverine cold water patches?

    NASA Astrophysics Data System (ADS)

    Wawrzyniak, Vincent; Piégay, Hervé; Allemand, Pascal; Vaudor, Lise; Goma, Régis; Grandjean, Philippe

    2016-04-01

    Temperature is a key factor for river ecosystems. In summer, patches of cold water are formed in the river by groundwater seepage. These patches have strong ecological significance and extend to the surface water in a well-mixed riverine system. These patches can serve as thermal refuges for some fish species during summer. In this study, the temporal variability and spatial distribution of cold water patches were explored along a 50 km river reach (the lower Ain River, France) using thermal infrared airborne remote sensing. This study examines a new range of processes acting on cold water patches at different scales that have not previously been touched upon in the literature. Three airborne campaigns were conducted during the summers of 2010, 2011 and 2014. Based on these images, a large number of cold water patches were identified using an automated method. Four types of patches were observed: tributary plumes, cold side channels (former channels or point-bar backwater channels), side seeps (located directly in the river channel) and gravel bar seeps (occurring at the downstream end of gravel bars). Logistic regression was used to analyse the longitudinal distribution of cold water patches according to geomorphologic indicators reflecting current or past fluvial process. Side seeps were found to be related to the local geology. Cold side channels were correlated to contemporary and past lateral river mobility. Gravel bar seeps were related to the current development of bars and are more prevalent in wandering reaches than in single-bed incised and paved reaches. The logistic model was subsequently used to evaluate gravel bar seep variability in the past. The model suggests larger numbers of seeps in the mid-20th century when bar surface area was higher. Interannual variability in the occurrence and spatial extent of side seeps and gravel bar seeps appear to be related to groundwater level fluctuations. Cold side channels exhibited greater interannual stability

  5. Spatial and temporal variability in carbon flux and its correlation with canopy level vegetation indices

    NASA Astrophysics Data System (ADS)

    Hastings, S. J.; Oechel, W. C.; Gamon, J. A.; Salinas, C.

    2003-12-01

    The temporal variability of carbon and water flux of a sarcocaulescent desert shrub ecosystem from July 2001 to September 2003 as measured using the eddy covariance technique in La Paz, Baja California Sur, Mex are described. Our objective was to link site specific measurements of net ecosystem flux with both canopy and satellite remote sensing measurements. Initially, using daily mid day web cam photos, patterns of phenological development and the rate of carbon uptake or loss were found to be linked with the timing and amount of rainfall. When seasonal rains began earlier than normal (2001), loss of carbon via soil respiration was observed with no development of the photosynthetic canopy. Upon the onset of the historical rainy season for the area, seasonal maximum values of net ecosystem flux (-1.5 vs -0.7 gC m-2 day-1 in 2001 and 2002 respectively) was strongly correlated with the amount of rainfall in 2001 and 2002 with precipitation in 2001 approximately twice as large as in 2002 (338 mm vs 124 mm). Spatially explicit measurements of soil respiration and canopy level normalized difference vegetation index were initiated in April of 2003. Mid August rains in 2003 resulted in the anticipated response of the vegetation with respect to development of the canopy. Using the spatial patterns of soil respiration and canopy level NDVI coupled with soil moisture and root biomass sampling, root development was shown to make up a large portion of ecosystem respiration upon the onset of the seasonal rains in 2003. These results are compared with 21 years of regional AVHRR and precipitation for the area as well as MODIS remote sensing outputs.

  6. Brain: a complex adaptive structure at multiple levels

    NASA Astrophysics Data System (ADS)

    Klein, Bradley G.

    2001-10-01

    The human brain is comprised of over 100 billion neurons organized into tracts, nuclei, circuits and systems. This provides innumerable elegant abilities that rely on the nervous system to act as a complex adaptive structure (CAS). This property is apparent with respect to overall function, the function of individual neurons and the function of sensory and motor systems. At the overall functional level, the nervous system monitors the environments and can alter that environment. Alterations such as turning on a light switch or changing the diameter of neural vasculature, can improve the performance or chance for survival of the nervous system. Individual neurons can alter the activity of their electrogenic pumps, their rate of transmitter synthesis, their neurotransmitter release and their receptor density in order to maintain optimal functioning in a circuit following changes in their micro-environment. At the systems level, the visual system adjusts the orientation of the eyes or pupillary diameter to receive the highest quality visual information. In the motor system, the myotatic reflex maintains muscle position in the face of changing load, and the gain of the muscle organ responsible for the myotatic reflex can also be automatically adjusted. Internal homeostasis, essential for optimal performance of the nervous system, can be achieved through complex behavioral actions such as feeding. The hypothalamus plays an important role in such behaviors and in the type of sensorimotor integration responsible for the CAS nature of overall nervous system function. Thinking about the CAS characteristics of the nervous system may lead to development of non-biological CAS prostheses for the brain.

  7. Does Controlling for Temporal Parameters Change the Levels-of-Processing Effect in Working Memory?

    PubMed

    Loaiza, Vanessa M; Camos, Valérie

    2016-01-01

    The distinguishability between working memory (WM) and long-term memory has been a frequent and long-lasting source of debate in the literature. One recent method of identifying the relationship between the two systems has been to consider the influence of long-term memory effects, such as the levels-of-processing (LoP) effect, in WM. However, the few studies that have examined the LoP effect in WM have shown divergent results. This study examined the LoP effect in WM by considering a theoretically meaningful methodological aspect of the LoP span task. Specifically, we fixed the presentation duration of the processing component a priori because such fixed complex span tasks have shown differences when compared to unfixed tasks in terms of recall from WM as well as the latent structure of WM. After establishing a fixed presentation rate from a pilot study, the LoP span task presented memoranda in red or blue font that were immediately followed by two processing words that matched the memoranda in terms of font color or semantic relatedness. On presentation of the processing words, participants made deep or shallow processing decisions for each of the memoranda before a cue to recall them from WM. Participants also completed delayed recall of the memoranda. Results indicated that LoP affected delayed recall, but not immediate recall from WM. These results suggest that fixing temporal parameters of the LoP span task does not moderate the null LoP effect in WM, and further indicate that WM and long-term episodic memory are dissociable on the basis of LoP effects. PMID:27152126

  8. Stochastic modeling of Lake Van water level time series with jumps and multiple trends

    NASA Astrophysics Data System (ADS)

    Aksoy, H.; Unal, N. E.; Eris, E.; Yuce, M. I.

    2013-06-01

    In the 1990s, water level in the closed-basin Lake Van located in the Eastern Anatolia, Turkey, has risen up about 2 m. Analysis of the hydrometeorological data shows that change in the water level is related to the water budget of the lake. In this study, stochastic models are proposed for simulating monthly water level data. Two models considering mono- and multiple-trend time series are developed. The models are derived after removal of trend and periodicity in the dataset. Trend observed in the lake water level time series is fitted by mono- and multiple-trend lines. In the so-called mono-trend model, the time series is treated as a whole under the hypothesis that the lake water level has an increasing trend. In the second model (so-called multiple-trend), the time series is divided into a number of segments to each a linear trend can be fitted separately. Application on the lake water level data shows that four segments, each fitted with a trend line, are meaningful. Both the mono- and multiple-trend models are used for simulation of synthetic lake water level time series under the hypothesis that the observed mono- and multiple-trend structure of the lake water level persist during the simulation period. The multiple-trend model is found better for planning the future infrastructural projects in surrounding areas of the lake as it generates higher maxima for the simulated lake water level.

  9. Multiple PAR and E4BP4 bZIP transcription factors in zebrafish: diverse spatial and temporal expression patterns.

    PubMed

    Ben-Moshe, Zohar; Vatine, Gad; Alon, Shahar; Tovin, Adi; Mracek, Philipp; Foulkes, Nicholas S; Gothilf, Yoav

    2010-09-01

    Circadian rhythms of physiology and behavior are generated by an autonomous circadian oscillator that is synchronized daily with the environment, mainly by light input. The PAR subfamily of transcriptional activators and the related E4BP4 repressor belonging to the basic leucine zipper (bZIP) family are clock-controlled genes that are suggested to mediate downstream circadian clock processes and to feedback onto the core oscillator. Here, the authors report the characterization of these genes in the zebrafish, an increasingly important model in the field of chronobiology. Five novel PAR and six novel e4bp4 zebrafish homolog genes were identified using bioinformatic tools and their coding sequences were cloned. Based on their evolutionary relationships, these genes were annotated as ztef2, zhlf1 and zhlf2, zdbp1 and zdbp2, and ze4bp4-1 to -6. The spatial and temporal mRNA expression pattern of each of these factors was characterized in zebrafish embryos in the context of a functional circadian clock and regulation by light. Nine of the factors exhibited augmented and rhythmic expression in the pineal gland, a central clock organ in zebrafish. Moreover, these genes were found to be regulated, to variable extents, by the circadian clock and/or by light. Differential expression patterns of multiple paralogs in zebrafish suggest multiple roles for these factors within the vertebrate circadian clock. This study, in the genetically accessible zebrafish model, lays the foundation for further research regarding the involvement and specific roles of PAR and E4BP4 transcription factors in the vertebrate circadian clock mechanism. PMID:20854132

  10. Temporal Variability of Upper-level Winds at the Eastern Range, Western Range and Wallops Flight Facility

    NASA Technical Reports Server (NTRS)

    Decker, Ryan; Barbre, Robert E.

    2014-01-01

    Space launch vehicles incorporate upper-level wind profiles to determine wind effects on the vehicle and for a commit to launch decision. These assessments incorporate wind profiles measured hours prior to launch and may not represent the actual wind the vehicle will fly through. Uncertainty in the upper-level winds over the time period between the assessment and launch can be mitigated by a statistical analysis of wind change over time periods of interest using historical data from the launch range. Five sets of temporal wind pairs at various times (.75, 1.5, 2, 3 and 4-hrs) at the Eastern Range, Western Range and Wallops Flight Facility were developed for use in upper-level wind assessments. Database development procedures as well as statistical analysis of temporal wind variability at each launch range will be presented.

  11. Effects of Multiple Simulation Presentation among Students of Different Anxiety Levels in the Learning of Probability

    ERIC Educational Resources Information Center

    Fong, Soon Fook; Por, Fei Ping; Tang, Ai Ling

    2012-01-01

    The purpose of this study was to investigate the effects of multiple simulation presentation in interactive multimedia are on the achievement of students with different levels of anxiety in the learning of Probability. The interactive multimedia courseware was developed in two different modes, which were Multiple Simulation Presentation (MSP) and…

  12. Temporal and among-site variability of inherent water use efficiency at the ecosystem level

    NASA Astrophysics Data System (ADS)

    Beer, C.; Ciais, P.; Reichstein, M.; Baldocchi, D.; Law, B. E.; Papale, D.; Soussana, J.-F.; Ammann, C.; Buchmann, N.; Frank, D.; Gianelle, D.; Janssens, I. A.; Knohl, A.; KöStner, B.; Moors, E.; Roupsard, O.; Verbeeck, H.; Vesala, T.; Williams, C. A.; Wohlfahrt, G.

    2009-06-01

    Half-hourly measurements of the net exchanges of carbon dioxide and water vapor between terrestrial ecosystems and the atmosphere provide estimates of gross primary production (GPP) and evapotranspiration (ET) at the ecosystem level and on daily to annual timescales. The ratio of these quantities represents ecosystem water use efficiency. Its multiplication with mean daylight vapor pressure deficit (VPD) leads to a quantity which we call "inherent water use efficiency" (IWUE*). The dependence of IWUE* on environmental conditions indicates possible adaptive adjustment of ecosystem physiology in response to a changing environment. IWUE* is analyzed for 43 sites across a range of plant functional types and climatic conditions. IWUE* increases during short-term moderate drought conditions. Mean annual IWUE* varied by a factor of 3 among all sites. This is partly explained by soil moisture at field capacity, particularly in deciduous broad-leaved forests. Canopy light interception sets the upper limits to canopy photosynthesis, and explains half the variance in annual IWUE* among herbaceous ecosystems and evergreen needle-leaved forests. Knowledge of IWUE* offers valuable improvement to the representation of carbon and water coupling in ecosystem process models.

  13. A Comparison of Item-Level and Scale-Level Multiple Imputation for Questionnaire Batteries

    ERIC Educational Resources Information Center

    Gottschall, Amanda C.; West, Stephen G.; Enders, Craig K.

    2012-01-01

    Behavioral science researchers routinely use scale scores that sum or average a set of questionnaire items to address their substantive questions. A researcher applying multiple imputation to incomplete questionnaire data can either impute the incomplete items prior to computing scale scores or impute the scale scores directly from other scale…

  14. Stochastic modeling of Lake Van water level time series with jumps and multiple trends

    NASA Astrophysics Data System (ADS)

    Aksoy, H.; Unal, N. E.; Eris, E.; Yuce, M. I.

    2013-02-01

    In 1990s, water level in the closed-basin Lake Van located in the Eastern Anatolia, Turkey has risen up about 2 m. Analysis of the hydrometeorological shows that change in the water level is related to the water budget of the lake. In this study, a stochastic model is generated using the measured monthly water level data of the lake. The model is derived after removal of trend and periodicity in the data set. Trend observed in the lake water level time series is fitted by mono- and multiple-trend lines. For the multiple-trend, the time series is first divided into homogeneous segments by means of SEGMENTER, segmentation software. Four segments are found meaningful practically each fitted with a trend line. Two models considering mono- and multiple-trend time series are developed. The multiple-trend model is found better for planning future development in surrounding areas of the lake.

  15. Assessing Interchangeability at Cluster-Levels with Multiple-Informant Data

    PubMed Central

    Luo, Zhehui; Breslau, Joshua; Gardiner, Joseph C.; Chen, Qiaoling; Breslau, Naomi

    2013-01-01

    Studies examining the relationship between neighborhood social disorder and health often rely on multiple informants. Such studies assume interchangeability of the latent constructs derived from multiple-informant data. Existing methods examining this assumption do not clearly delineate the uncertainty at individual levels from that at neighborhood levels. We propose a multi-level variance component factor model that allows this delineation. Data come from a survey of a representative sample of children born between 1983 and 1985 in the inner city of Detroit and nearby middle-class suburbs. Results indicate that the informant-level models tend to exaggerate the effect of places due to differences between persons. Our evaluations of different methodologies lead to the recommendation of the multi-level variance component factor model whenever multiple-informant reports can be aggregated at a neighborhood level. PMID:24038232

  16. Quality assurance of temporal variability of natural decay chain and neutron induced background for low-level NORM analysis

    SciTech Connect

    Yoho, Michael; Porterfield, Donivan R.; Landsberger, Sheldon

    2015-09-22

    In this study, twenty-one high purity germanium (HPGe) background spectra were collected over 2 years at Los Alamos National Laboratory. A quality assurance methodology was developed to monitor spectral background levels from thermal and fast neutron flux levels and naturally occurring radioactive material decay series radionuclides. 238U decay products above 222Rn demonstrated minimal temporal variability beyond that expected from counting statistics. 238U and 232Th progeny below Rn gas displayed at most twice the expected variability. Further, an analysis of the 139 keV 74Ge(n, γ) and 691 keV 72Ge(n, n') spectral features demonstrated temporal stability for both thermal and fast neutron fluxes.

  17. Quality assurance of temporal variability of natural decay chain and neutron induced background for low-level NORM analysis

    DOE PAGESBeta

    Yoho, Michael; Porterfield, Donivan R.; Landsberger, Sheldon

    2015-09-22

    In this study, twenty-one high purity germanium (HPGe) background spectra were collected over 2 years at Los Alamos National Laboratory. A quality assurance methodology was developed to monitor spectral background levels from thermal and fast neutron flux levels and naturally occurring radioactive material decay series radionuclides. 238U decay products above 222Rn demonstrated minimal temporal variability beyond that expected from counting statistics. 238U and 232Th progeny below Rn gas displayed at most twice the expected variability. Further, an analysis of the 139 keV 74Ge(n, γ) and 691 keV 72Ge(n, n') spectral features demonstrated temporal stability for both thermal and fast neutronmore » fluxes.« less

  18. Temporal dynamics of direct N2O fluxes from agro-ecosystems in cold climates: importance of year-round measurements in multiple cropping systems

    NASA Astrophysics Data System (ADS)

    Wagner-Riddle, C.; Tenuta, M.

    2014-12-01

    Soil N2O fluxes (direct emissions) are highly variable in time and space due to soil, weather and management drivers. In cold climates, freeze/thaw cycles and short growing seasons can enhance soil N2O production contributing to the temporal variability of fluxes. Year-round measurements of N2O fluxes in multiple cropping systems are needed to decrease the uncertainty of annual emission estimates and to devise mitigation practices for emission reduction in cold climates. We have deployed a micrometeorological flux-gradient approach coupled to a tunable diode laser absorption spectroscopy system at two long-term sites in Canada: Elora, Ontario (2000-2014) and Glenlea, Manitoba (2006-2014). Quasi-simultaneous half-hourly flux measurements on four 4-ha fields within a level and aerodynamically homogeneous landscape were obtained allowing for comparison of crop type and/or management practices within and between years. Annual crops such as corn, soybeans, wheat, and barley received typical inorganic fertilizer and/or manure applications, and best management practices such as timing of application and reduced tillage were studied. Perennial grass-alfalfa hayfields were compared to annual crops during selected time periods. Here we synthesize the long-term datasets from these two sites, and quantify the overall contribution of non-growing season (mainly freeze/thaw cycles) and growing season (mainly nitrogen application) to annual emission totals. Uncertainties of regional estimates for cold-climates will be assessed using these long-term datasets.

  19. Acceptance and Accuracy of Multiple Choice, Confidence-Level, and Essay Question Formats for Graduate Students

    ERIC Educational Resources Information Center

    Swartz, Stephen M.

    2006-01-01

    The confidence level (information-referenced testing; IRT) design is an attempt to improve upon the multiple choice format by allowing students to express a level of confidence in the answers they choose. In this study, the author evaluated student perceptions of the ease of use and accuracy of and general preference for traditional multiple…

  20. A FORTRAN IV Program for Multiple-choice Tests with Predetermined Minimal Acceptable Performance Levels

    ERIC Educational Resources Information Center

    Noe, Michael J.

    1976-01-01

    A Fortran IV multiple choice test scoring program for an IBM 370 computer is described that computes minimally acceptable performance levels and compares student scores to these levels. The program accomodates up to 500 items with no more than nine alternatives from a group of examinees numbering less than 10,000. (Author)

  1. Ocean warming and seabird communities of the southern California Current System (1987-98): response at multiple temporal scales

    NASA Astrophysics Data System (ADS)

    Hyrenbach, K. David; Veit, Richard R.

    2003-08-01

    Declines in ocean productivity and shifts in species assemblages along the West Coast of North America during the second half of the XXth century have been attributed to the concurrent warming of the California Current. This paper addresses changes in the avifauna off southern California between May 1987 and September 1998, in response to shifting water mass distributions over short (<1 year) and long (interannual) temporal scales. More specifically, our research focuses on the relative importance of distinct foraging guilds and species assemblages with an affinity for warm and cold water. Over the long term, the avifauna off southern California shifted from a 'high-productivity' community typical of eastern boundary upwelling systems, to a 'low-productivity' assemblage similar to those inhabiting the subtropical gyres. Overall seabird abundance decreased; the relative importance of cold-water seabirds that dive in pursuit of prey declined; and warm-water species that feed at the surface and plunge to capture prey became more numerous. These community-level changes are consistent with the northward shifts in species ranges and the declining ocean productivity anticipated as a result of global warming. However, the response of individual taxa with an affinity for warm-water and cold-water conditions has been more difficult to predict, due to differences in species-specific responses to ocean warming. The three cold-water species investigated (Sooty Shearwater Puffinus griseus, Cassin's Auklet Ptychoramphus aleuticus, and Rhinoceros Auklet Cerorhinca monocerata) decreased in abundance during this study. On the other hand, only one of the six warm-water species considered (Pink-footed Shearwater, Puffinus creatopus) increased significantly over the long term. Yet, the warm-water Leach's Storm-petrel ( Oceanodroma leucorhoa) increased between 1987 and 1993, and then declined between 1994 and 1998. Moreover, cross-correlations between seasonally adjusted anomalies of

  2. A Study On The Effect Of Multiple Intelligences Theory Upon The Success Level Of Genders

    NASA Astrophysics Data System (ADS)

    Oral, Imran

    2007-04-01

    In this study, the effects of Multiple Intelligences theory upon the success level of genders were investigated at three high schools in Konya. In conclusion, a significant difference has not been found between groups for multiple intelligences and groups for pre-tests. In general, the female student groups were more successful than the male student groups regarding post-test. However, this result did not cause a significant difference between the groups.

  3. Cascade of Spatio-Temporal Period-Doubling Bifurcations in Connection with the Appearance and Dynamics of Non-Concentric Multiple Double Layers in Plasma

    SciTech Connect

    Dimitriu, D. G.; Ivan, L. M.

    2008-03-19

    Experimental results are presented that reveal a complex route to chaos in plasma, in which a Feigenbaum scenario (cascade of temporal period-doubling bifurcation) develops simultaneously with a cascade of spatial period-doubling bifurcations, in connection with the appearance of a non-concentric multiple double layers structure. The Feigenbaum scenario is identified in the time series of the oscillations of the current through the plasma conductor.

  4. Wavelength-encoding/temporal-spreading optical code division multiple-access system with in-fiber chirped moiré gratings.

    PubMed

    Chen, L R; Smith, P W; de Sterke, C M

    1999-07-20

    We propose an optical code division multiple-access (OCDMA) system that uses in-fiber chirped moiré gratings (CMG's) for encoding and decoding of broadband pulses. In reflection the wavelength-selective and dispersive nature of CMG's can be used to implement wavelength-encoding/temporal-spreading OCDMA. We give examples of codes designed around the constraints imposed by the encoding devices and present numerical simulations that demonstrate the proposed concept. PMID:18323934

  5. Advancing analysis of spatio-temporal variations of soil nutrients in the water level fluctuation zone of China's Three Gorges Reservoir using self-organizing map.

    PubMed

    Ye, Chen; Li, Siyue; Yang, Yuyi; Shu, Xiao; Zhang, Jiaquan; Zhang, Quanfa

    2015-01-01

    The ~350 km2 water level fluctuation zone (WLFZ) in the Three Gorges Reservoir (TGR) of China, situated at the intersection of terrestrial and aquatic ecosystems, experiences a great hydrological change with prolonged winter inundation. Soil samples were collected in 12 sites pre- (September 2008) and post submergence (June 2009) in the WLFZ and analyzed for soil nutrients. Self-organizing map (SOM) and statistical analysis including multi-way ANOVA, paired-T test, and stepwise least squares multiple regression were employed to determine the spatio-temporal variations of soil nutrients in relation to submergence, and their correlations with soil physical characteristics. Results showed significant spatial variability in nutrients along ~600 km long shoreline of the TGR before and after submergence. There were higher contents of organic matter, total nitrogen (TN), and nitrate (NO3-) in the lower reach and total phosphorus (TP) in the upper reach that were primarily due to the spatial variations in soil particle size composition and anthropogenic activities. Submergence enhanced soil available potassium (K), while significantly decreased soil N, possibly due to the alterations of soil particle size composition and increase in soil pH. In addition, SOM analysis determined important roles of soil pH value, bulk density, soil particle size (i.e., silt and sand) and nutrients (TP, TK, and AK) on the spatial and temporal variations in soil quality. Our results suggest that urban sewage and agricultural runoffs are primary pollutants that affect soil nutrients in the WLFZ of TGR. PMID:25789612

  6. Advancing Analysis of Spatio-Temporal Variations of Soil Nutrients in the Water Level Fluctuation Zone of China’s Three Gorges Reservoir Using Self-Organizing Map

    PubMed Central

    Ye, Chen; Li, Siyue; Yang, Yuyi; Shu, Xiao; Zhang, Jiaquan; Zhang, Quanfa

    2015-01-01

    The ~350 km2 water level fluctuation zone (WLFZ) in the Three Gorges Reservoir (TGR) of China, situated at the intersection of terrestrial and aquatic ecosystems, experiences a great hydrological change with prolonged winter inundation. Soil samples were collected in 12 sites pre- (September 2008) and post submergence (June 2009) in the WLFZ and analyzed for soil nutrients. Self-organizing map (SOM) and statistical analysis including multi-way ANOVA, paired-T test, and stepwise least squares multiple regression were employed to determine the spatio-temporal variations of soil nutrients in relation to submergence, and their correlations with soil physical characteristics. Results showed significant spatial variability in nutrients along ~600 km long shoreline of the TGR before and after submergence. There were higher contents of organic matter, total nitrogen (TN), and nitrate (NO3-) in the lower reach and total phosphorus (TP) in the upper reach that were primarily due to the spatial variations in soil particle size composition and anthropogenic activities. Submergence enhanced soil available potassium (K), while significantly decreased soil N, possibly due to the alterations of soil particle size composition and increase in soil pH. In addition, SOM analysis determined important roles of soil pH value, bulk density, soil particle size (i.e., silt and sand) and nutrients (TP, TK, and AK) on the spatial and temporal variations in soil quality. Our results suggest that urban sewage and agricultural runoffs are primary pollutants that affect soil nutrients in the WLFZ of TGR. PMID:25789612

  7. Medical Temporal-Knowledge Discovery via Temporal Abstraction

    PubMed Central

    Moskovitch, Robert; Shahar, Yuval

    2009-01-01

    Medical knowledge includes frequently occurring temporal patterns in longitudinal patient records. These patterns are not easily detectable by human clinicians. Current knowledge could be extended by automated temporal data mining. However, multivariate time-oriented data are often present at various levels of abstraction and at multiple temporal granularities, requiring a transformation into a more abstract, yet uniform dimension suitable for mining. Temporal abstraction (of both the time and value dimensions) can transform multiple types of point-based data into a meaningful, time-interval-based data representation, in which significant, interval-based temporal patterns can be discovered. We introduce a modular, fast time-interval mining method, KarmaLego, which exploits the transitivity inherent in temporal relations. We demonstrate the usefulness of KarmaLego in finding meaningful temporal patterns within a set of records of diabetic patients; several patterns seem to have a different frequency depending on gender. We also suggest additional uses of the discovered patterns for temporal clustering of the mined population and for classifying multivariate time series. PMID:20351898

  8. Integrating multiple temporal scales of snowfall, soil, and plant processes at the Great Basin Desert - Sierra Nevada ecotone

    NASA Astrophysics Data System (ADS)

    Loik, M. E.

    2012-12-01

    plant species. Moreover, annual growth ring increments of the conifers Pinus jeffreyi and Pi. contorta were not equally sensitive to snow depth. Results indicate complex interactions between snow depth, soil water, and plant characteristics at multiple temporal scales, which help drive the resilience of plant processes to large interannual variations in snow depth as well as manipulated snow depth. This resilience suggests that this ecotone may be stable in the face of anticipated changes in snow depth.

  9. Wallenda/DLK protein levels are temporally downregulated by Tramtrack69 to allow R7 growth cones to become stationary boutons.

    PubMed

    Feoktistov, Alexander I; Herman, Tory G

    2016-08-15

    Dual leucine zipper kinase (DLK) promotes growth cone motility and must be restrained to ensure normal development. PHR (Pam/Highwire/RPM-1) ubiquitin ligases therefore target DLK for degradation unless axon injury occurs. Overall DLK levels decrease during development, but how DLK levels are regulated within a developing growth cone has not been examined. We analyzed the expression of the fly DLK Wallenda (Wnd) in R7 photoreceptor growth cones as they halt at their targets and become presynaptic boutons. We found that Wnd protein levels are repressed by the PHR protein Highwire (Hiw) during R7 growth cone halting, as has been observed in other systems. However, as R7 growth cones become boutons, Wnd levels are further repressed by a temporally expressed transcription factor, Tramtrack69 (Ttk69). Previously unobserved negative feedback from JNK also contributes to Wnd repression at both time points. We conclude that neurons deploy additional mechanisms to downregulate DLK as they form stable, synaptic connections. We use live imaging to probe the effects of Wnd and Ttk69 on R7 bouton development and conclude that Ttk69 coordinates multiple regulators of this process. PMID:27402706

  10. Trace element levels in pine snake hatchlings: tissue and temporal differences.

    PubMed

    Burger, J

    1992-02-01

    Trace element levels have seldom been examined in reptiles, although some large snakes are high on the trophic level pyramid. Lead, cadmium, mercury, selenium, chromium and manganese levels were examined in skin and whole body tissue of pine snakes (Pituophis melanoleucus) from the New Jersey Pine Barrens between 1985-1990. Depending on the element, variations in levels were primarily explained by year and tissue, and not by sex or location. There were significantly higher levels of lead, mercury, and chromium in the skin compared to the whole body tissue, suggesting that the frequent shedding of skin can act as a method of toxic metal excretion by snakes. Manganese and selenium levels were significantly higher in the body compared to the skin. PMID:1536601

  11. Temporal processing of vibratory communication signals at the level of ascending interneurons in Nezara viridula (Hemiptera: Pentatomidae).

    PubMed

    Zorović, Maja

    2011-01-01

    During mating, males and females of N. viridula (Heteroptera: Pentatomidae) produce sex- and species-specific calling and courtship substrate-borne vibratory signals, grouped into songs. Recognition and localization of these signals are fundamental for successful mating. The recognition is mainly based on the temporal pattern, i.e. the amplitude modulation, while the frequency spectrum of the signals usually only plays a minor role. We examined the temporal selectivity for vibratory signals in four types of ascending vibratory interneurons in N. viridula. Using intracellular recording and labelling technique, we analyzed the neurons' responses to 30 pulse duration/interval duration (PD/ID) combinations. Two response arrays were created for each neuron type, showing the intensity of the responses either as time-averaged spike counts or as peak instantaneous spike rates. The mean spike rate response arrays showed preference of the neurons for short PDs (below 600 ms) and no selectivity towards interval duration; while the peak spike rate response arrays exhibited either short PD/long ID selectivity or no selectivity at all. The long PD/short ID combinations elicited the weakest responses in all neurons tested. No response arrays showed the receiver preference for either constant period or duty cycle. The vibratory song pattern selectivity matched the PD of N. viridula male vibratory signals, thus pointing to temporal filtering for the conspecific vibratory signals already at level of the ascending interneurons. In some neurons the responses elicited by the vibratory stimuli were followed by distinct, regular oscillations of the membrane potential. The distance between the oscillation peaks matched the temporal structure of the male calling song, indicating a possible resonance based mechanism for signal recognition. PMID:22053216

  12. Temporal Processing of Vibratory Communication Signals at the Level of Ascending Interneurons in Nezara viridula (Hemiptera: Pentatomidae)

    PubMed Central

    Zorović, Maja

    2011-01-01

    During mating, males and females of N. viridula (Heteroptera: Pentatomidae) produce sex- and species-specific calling and courtship substrate-borne vibratory signals, grouped into songs. Recognition and localization of these signals are fundamental for successful mating. The recognition is mainly based on the temporal pattern, i.e. the amplitude modulation, while the frequency spectrum of the signals usually only plays a minor role. We examined the temporal selectivity for vibratory signals in four types of ascending vibratory interneurons in N. viridula. Using intracellular recording and labelling technique, we analyzed the neurons' responses to 30 pulse duration/interval duration (PD/ID) combinations. Two response arrays were created for each neuron type, showing the intensity of the responses either as time-averaged spike counts or as peak instantaneous spike rates. The mean spike rate response arrays showed preference of the neurons for short PDs (below 600 ms) and no selectivity towards interval duration; while the peak spike rate response arrays exhibited either short PD/long ID selectivity or no selectivity at all. The long PD/short ID combinations elicited the weakest responses in all neurons tested. No response arrays showed the receiver preference for either constant period or duty cycle. The vibratory song pattern selectivity matched the PD of N. viridula male vibratory signals, thus pointing to temporal filtering for the conspecific vibratory signals already at level of the ascending interneurons. In some neurons the responses elicited by the vibratory stimuli were followed by distinct, regular oscillations of the membrane potential. The distance between the oscillation peaks matched the temporal structure of the male calling song, indicating a possible resonance based mechanism for signal recognition. PMID:22053216

  13. Emergence of elevated levels of multiple infections in spatial host-virus dynamics

    NASA Astrophysics Data System (ADS)

    Taylor, Bradford; Penington, Catherine; Weitz, Joshua

    Bacteria are subject to infection and potentially to multiple simultaneous infections by viruses. Multiply infected hosts have altered life-history traits (e.g., viral burst size) and evolutionary rates (e.g., viral recombination). Yet our understanding of multiple infections of microbes is limited to lab settings where the ratio of inoculant viruses to hosts is controlled. In contrast, rates of multiple infection in natural environments are unknown. Here, we develop an individual based model to quantify rates of multiple infections by a single viral type. We explore different dispersal regimes by varying the viral adsorption rate. High dispersal regimes lead to spatial dynamics and rates of multiple infection equivalent to predictions from mean field models. Local clustering of bacterial hosts occurs for low dispersal. Comparing to mean field, the clustering leads to increased rates of multiple infection and fatter tails in the distribution of the number of internal viruses. The emergence of increased colocalization of viruses with infected hosts leads to these deviations. We show these deviations result from the wave-like spread of viruses when invading clusters of bacteria. Our work represents a key step in understanding the population-level effects of multiple infections.

  14. Temporal characterization of mercury accumulation at different trophic levels and implications for metal biomagnification along a coastal food web.

    PubMed

    Cardoso, P G; Pereira, E; Duarte, A C; Azeiteiro, U M

    2014-10-15

    The main goal of this study was to assess temporal mercury variations along an estuarine food web to evaluate the mercury contamination level of the system and the risks that humans are exposed to, due to mercury biomagnification. The highest mercury concentrations in the sediments and primary producers (macrophytes) were observed during winter sampling. Instead, the highest mercury concentrations in the water, suspended particulate matter as well as in the zooplanktonic and suprabenthic communities were observed during summer sampling. Evidences of mercury biomagnification along the food web were corroborated by the positive biomagnification factors, particularly for omnivorous macrobenthic species. Comparing the mercury levels at distinct components with several environmental quality criteria it suggests that sediments, water and edible species (e.g., bivalve Scrobicularia plana and the crustacean Carcinus maenas) presented higher mercury levels than the values accepted by legislation which represent a matter of concern for the environment and human health. PMID:25172612

  15. Levels and temporal trends (1983-2003) of polybrominated diphenyl ethers and hexabromocyclododecanes in seabird eggs from north Norway.

    PubMed

    Helgason, Lisa B; Polder, Anuschka; Føreid, Siri; Baek, Kine; Lie, Elisabeth; Gabrielsen, Geir W; Barrett, Robert T; Skaare, Janneche U

    2009-05-01

    The present study assessed temporal trends (1983-2003) of polybrominated diphenyl ethers (PBDEs) and hexabromocyclododecanes (HBCDs) in eggs of herring gulls (Larus argentatus), Atlantic puffins (Fratercula arctica), and black-legged kittiwakes (Rissa tridactyla) in North Norway. Generally, PBDE concentrations increased between 1983 and 1993 and then leveled out, although species-specific trends were reported. Levels of alpha-HBCD increased in all species throughout the 20-year period. Levels of nona-BDEs and BDE 209 ranged from nondetectable to parts per billion. Nevertheless, highly variable procedural blanks were reported for the nona-BDEs and BDE 209, which clearly illustrates the importance of including blanks repeatedly during determination of these compounds. PMID:19102583

  16. Temporal and Spatial prediction of groundwater levels using Artificial Neural Networks, Fuzzy logic and Kriging interpolation.

    NASA Astrophysics Data System (ADS)

    Tapoglou, Evdokia; Karatzas, George P.; Trichakis, Ioannis C.; Varouchakis, Emmanouil A.

    2014-05-01

    The purpose of this study is to examine the use of Artificial Neural Networks (ANN) combined with kriging interpolation method, in order to simulate the hydraulic head both spatially and temporally. Initially, ANNs are used for the temporal simulation of the hydraulic head change. The results of the most appropriate ANNs, determined through a fuzzy logic system, are used as an input for the kriging algorithm where the spatial simulation is conducted. The proposed algorithm is tested in an area located across Isar River in Bayern, Germany and covers an area of approximately 7800 km2. The available data extend to a time period from 1/11/2008 to 31/10/2012 (1460 days) and include the hydraulic head at 64 wells, temperature and rainfall at 7 weather stations and surface water elevation at 5 monitoring stations. One feedforward ANN was trained for each of the 64 wells, where hydraulic head data are available, using a backpropagation algorithm. The most appropriate input parameters for each wells' ANN are determined considering their proximity to the measuring station, as well as their statistical characteristics. For the rainfall, the data for two consecutive time lags for best correlated weather station, as well as a third and fourth input from the second best correlated weather station, are used as an input. The surface water monitoring stations with the three best correlations for each well are also used in every case. Finally, the temperature for the best correlated weather station is used. Two different architectures are considered and the one with the best results is used henceforward. The output of the ANNs corresponds to the hydraulic head change per time step. These predictions are used in the kriging interpolation algorithm. However, not all 64 simulated values should be used. The appropriate neighborhood for each prediction point is constructed based not only on the distance between known and prediction points, but also on the training and testing error of

  17. Multiple-Choice Exams: An Obstacle for Higher-Level Thinking in Introductory Science Classes

    ERIC Educational Resources Information Center

    Stanger-Hall, Kathrin F.

    2012-01-01

    Learning science requires higher-level (critical) thinking skills that need to be practiced in science classes. This study tested the effect of exam format on critical-thinking skills. Multiple-choice (MC) testing is common in introductory science courses, and students in these classes tend to associate memorization with MC questions and may not…

  18. Coh-Metrix Measures Text Characteristics at Multiple Levels of Language and Discourse

    ERIC Educational Resources Information Center

    Graesser, Arthur C.; McNamara, Danielle S.; Cai, Zhiqang; Conley, Mark; Li, Haiying; Pennebaker, James

    2014-01-01

    Coh-Metrix analyzes texts on multiple measures of language and discourse that are aligned with multilevel theoretical frameworks of comprehension. Dozens of measures funnel into five major factors that systematically vary as a function of types of texts (e.g., narrative vs. informational) and grade level: narrativity, syntactic simplicity, word…

  19. Spatial and temporal variations of the seasonal sea level cycle in the northwest Pacific

    NASA Astrophysics Data System (ADS)

    Feng, Xiangbo; Tsimplis, Michael N.; Marcos, Marta; Calafat, Francisco M.; Zheng, Jinhai; JordÃ, Gabriel; Cipollini, Paolo

    2015-10-01

    The seasonal sea level variations observed from tide gauges over 1900-2013 and gridded satellite altimeter product AVISO over 1993-2013 in the northwest Pacific have been explored. The seasonal cycle is able to explain 60-90% of monthly sea level variance in the marginal seas, while it explains less than 20% of variance in the eddy-rich regions. The maximum annual and semiannual sea level cycles (30 and 6 cm) are observed in the north of the East China Sea and the west of the South China Sea, respectively. AVISO was found to underestimate the annual amplitude by 25% compared to tide gauge estimates along the coasts of China and Russia. The forcing for the seasonal sea level cycle was identified. The atmospheric pressure and the steric height produce 8-12 cm of the annual cycle in the middle continental shelf and in the Kuroshio Current regions separately. The removal of the two attributors from total sea level permits to identify the sea level residuals that still show significant seasonality in the marginal seas. Both nearby wind stress and surface currents can explain well the long-term variability of the seasonal sea level cycle in the marginal seas and the tropics because of their influence on the sea level residuals. Interestingly, the surface currents are a better descriptor in the areas where the ocean currents are known to be strong. Here, they explain 50-90% of interannual variability due to the strong links between the steric height and the large-scale ocean currents.

  20. Temporal Variability of the Bioaerosol Background at a Subway Station: Concentration Level, Size Distribution, and Diversity of Airborne Bacteria

    PubMed Central

    Dybwad, Marius; Skogan, Gunnar

    2014-01-01

    Naturally occurring bioaerosol environments may present a challenge to biological detection-identification-monitoring (BIODIM) systems aiming at rapid and reliable warning of bioterrorism incidents. One way to improve the operational performance of BIODIM systems is to increase our understanding of relevant bioaerosol backgrounds. Subway stations are enclosed public environments which may be regarded as potential bioterrorism targets. This study provides novel information concerning the temporal variability of the concentration level, size distribution, and diversity of airborne bacteria in a Norwegian subway station. Three different air samplers were used during a 72-h sampling campaign in February 2011. The results suggested that the airborne bacterial environment was stable between days and seasons, while the intraday variability was found to be substantial, although often following a consistent diurnal pattern. The bacterial levels ranged from not detected to 103 CFU m−3 and generally showed increased levels during the daytime compared to the nighttime levels, as well as during rush hours compared to non-rush hours. The airborne bacterial levels showed rapid temporal variation (up to 270-fold) on some occasions, both consistent and inconsistent with the diurnal profile. Airborne bacterium-containing particles were distributed between different sizes for particles of >1.1 μm, although ∼50% were between 1.1 and 3.3 μm. Anthropogenic activities (mainly passengers) were demonstrated as major sources of airborne bacteria and predominantly contributed 1.1- to 3.3-μm bacterium-containing particles. Our findings contribute to the development of realistic testing and evaluation schemes for BIODIM equipment by providing information that may be used to simulate operational bioaerosol backgrounds during controlled aerosol chamber-based challenge tests with biological threat agents. PMID:24162566

  1. Spatial and Temporal Patterns of SMAP Brightness Temperatures for Use in Level 1 TB Characterization

    NASA Astrophysics Data System (ADS)

    Kim, E. J.

    2015-12-01

    1. IntroductionThe recent launch of NASA's Soil Moisture Active Passive (SMAP) mission [Entekhabi, et al] has opened the door to improved brightness temperature (TB) calibration of satellite L-band microwave radiometers, through the use of SMAP's lower noise performance and better immunity to man-made interference (vs. ESA's Soil Moisture Ocean Salinity (SMOS) mission [Kerr, et al]), better spatial resolution (vs. NASA's Aquarius sea surface salinity mission [Le Vine, et al]), and cleaner antenna pattern (vs. SMOS). All three radiometers use/used large homogeneous places on Earth's surface as calibration targets—parts of the ocean, Antarctica, and tropical forests. Despite the recent loss of Aquarius data, there is still hope for creating a longer-term L-band data set that spans the timeframe of all 3 missions. 2. Description of Analyses and Expected Results In this paper, we analyze SMAP brightness temperature data to quantify the spatial and temporal characteristics of external target areas in the oceans, Antarctica, forests, and other areas. Existing analyses have examined these targets in terms of averages, standard deviations, and other basic statistics (for Aquarius & SMOS as well). This paper will approach the problem from a signal processing perspective. Coupled with the use of SMAP's novel RFI-mitigated TBs, and the aforementioned lower noise and cleaner antenna pattern, it is expected that of the 3 L-band missions, SMAP should do the best job of characterizing such external targets. The resulting conclusions should be useful to extract the best possible TB calibration from all 3 missions, helping to inter-compare the TB from the 3 missions, and to eventually inter-calibrate the TBs into a single long-term dataset.

  2. Temporal trends in metal levels in eggs of the endangered roseate tern (Sterna dougallii) in New York

    SciTech Connect

    Gochfeld, M. |; Burger, J. |

    1998-04-01

    Female birds sequester certain organic and inorganic compounds in their eggs which have been widely used as a bioindicator for examining the body burdens of contaminants and therefore the temporal and spatial trends of the contaminants in the environment. The same analyses can also reflect the status or vulnerability of the indicator species. Extensive bridge deleading activities in the New York Bight (Cape May to Montauk) in the early 1990s coincided with a long-term study of the endangered roseate tern (Sterna dougallii) on Long Island, New York, affording the opportunity to test the utility of such fish-eating species as bioindicators of lead contamination, as well as the potential impact on the bird population itself. In this paper the authors test the null hypothesis that there were no temporal trends between 1989 and 1994 in metal levels in eggs of roseate terns nesting at Cedar Beach, Long Island, where the birds have been declining since the late 1980s. The authors report levels and trends for cadmium, chromium, manganese, mercury, and selenium as well as lead in abandoned eggs collected each year.

  3. Temporal trends and determinants of longitudinal change in 25-hydroxyvitamin D and parathyroid hormone levels.

    PubMed

    Berger, Claudie; Greene-Finestone, Linda S; Langsetmo, Lisa; Kreiger, Nancy; Joseph, Lawrence; Kovacs, Christopher S; Richards, J Brent; Hidiroglou, Nick; Sarafin, Kurtis; Davison, K Shawn; Adachi, Jonathan D; Brown, Jacques; Hanley, David A; Prior, Jerilynn C; Goltzman, David

    2012-06-01

    Vitamin D is essential for facilitating calcium absorption and preventing increases in parathyroid hormone (PTH), which can augment bone resorption. Our objectives were to examine serum levels of 25-hydroxyvitamin D [25(OH)D] and PTH, and factors related to longitudinal change in a population-based cohort. This is the first longitudinal population-based study looking at PTH and 25(OH)D levels. We analyzed 3896 blood samples from 1896 women and 829 men in the Canadian Multicentre Osteoporosis Study over a 10-year period starting in 1995 to 1997. We fit hierarchical models with all available data and adjusted for season. Over 10 years, vitamin D supplement intake increased by 317 (95% confidence interval [CI] 277 to 359) IU/day in women and by 193 (135 to 252) IU/day in men. Serum 25(OH)D (without adjustment) increased by 9.3 (7.3 to 11.4) nmol/L in women and by 3.5 (0.6 to 6.4) nmol/L in men but increased by 4.7 (2.4 to 7.0) nmol/L in women and by 2.7 (-0.6 to 6.2) nmol/L in men after adjustment for vitamin D supplements. The percentage of participants with 25(OH)D levels <50 nmol/L was 29.7% (26.2 to 33.2) at baseline and 19.8% (18.0 to 21.6) at year 10 follow-up. PTH decreased over 10 years by 7.9 (5.4 to 11.3) pg/mL in women and by 4.6 (0.2 to 9.0) pg/mL in men. Higher 25(OH)D levels were associated with summer, younger age, lower body mass index (BMI), regular physical activity, sun exposure, and higher total calcium intake. Lower PTH levels were associated with younger age and higher 25(OH)D levels in both women and men and with lower BMI and participation in regular physical activity in women only. We have observed concurrent increasing 25(OH)D levels and decreasing PTH levels over 10 years. Secular increases in supplemental vitamin D intake influenced both changes in serum 25(OH)D and PTH levels. PMID:22407786

  4. Spatial data aggregation for spatio-temporal individual-level models of infectious disease transmission.

    PubMed

    Deeth, Lorna E; Deardon, Rob

    2016-05-01

    A class of complex statistical models, known as individual-level models, have been effectively used to model the spread of infectious diseases. These models are often fitted within a Bayesian Markov chain Monte Carlo framework, which can have a sig nificant computational expense due to the complex nature of the likelihood function associated with this class of models. Increases in population size or duration of the modeled epidemic can contribute to this computational burden. Here, we explore the effect of reducing this computational expense by aggregating the data into spatial clusters, and therefore reducing the overall population size. Individual-level models, reparameterized to account for this aggregation effect, may then be fitted to the spatially aggregated data. The ability of two reparameterized individual-level models, when fitted to this reduced data set, to identify a covariate effect is investigated through a simulation study. PMID:27246276

  5. Instantiating the multiple levels of analysis perspective in a program of study on externalizing behavior

    PubMed Central

    Beauchaine, Theodore P.; Gatzke-Kopp, Lisa M.

    2014-01-01

    During the last quarter century, developmental psychopathology has become increasingly inclusive and now spans disciplines ranging from psychiatric genetics to primary prevention. As a result, developmental psychopathologists have extended traditional diathesis–stress and transactional models to include causal processes at and across all relevant levels of analysis. Such research is embodied in what is known as the multiple levels of analysis perspective. We describe how multiple levels of analysis research has informed our current thinking about antisocial and borderline personality development among trait impulsive and therefore vulnerable individuals. Our approach extends the multiple levels of analysis perspective beyond simple Biology × Environment interactions by evaluating impulsivity across physiological systems (genetic, autonomic, hormonal, neural), psychological constructs (social, affective, motivational), developmental epochs (preschool, middle childhood, adolescence, adulthood), sexes (male, female), and methods of inquiry (self-report, informant report, treatment outcome, cardiovascular, electrophysiological, neuroimaging). By conducting our research using any and all available methods across these levels of analysis, we have arrived at a developmental model of trait impulsivity that we believe confers a greater understanding of this highly heritable trait and captures at least some heterogeneity in key behavioral outcomes, including delinquency and suicide. PMID:22781868

  6. Neuroactive steroid levels in plasma and cerebrospinal fluid of male multiple sclerosis patients.

    PubMed

    Caruso, Donatella; Melis, Marta; Fenu, Giuseppe; Giatti, Silvia; Romano, Simone; Grimoldi, Maria; Crippa, Donatella; Marrosu, Maria Giovanna; Cavaletti, Guido; Melcangi, Roberto Cosimo

    2014-08-01

    Neuroactive steroid family includes molecules synthesized in peripheral glands (i.e., hormonal steroids) and directly in the nervous system (i.e., neurosteroids) which are key regulators of the nervous function. As already reported in clinical and experimental studies, neurodegenerative diseases affect the levels of neuroactive steroids. However, a careful analysis comparing the levels of these molecules in cerebrospinal fluid (CSF) and in plasma of multiple sclerosis (MS) patients is still missing. To this aim, the levels of neuroactive steroids were evaluated by liquid chromatography-tandem mass spectrometry in CSF and plasma of male adults affected by Relapsing-Remitting MS and compared with those collected in control patients. An increase in pregnenolone and isopregnanolone levels associated with a decrease in progesterone metabolites, dihydroprogesterone, and tetrahydroprogesterone was observed in CSF of MS patients. Moreover, an increase of 5α-androstane-3α,17β-diol and of 17β-estradiol levels associated with a decrease of dihydrotestosterone also occurred. In plasma, an increase in pregnenolone, progesterone, and dihydrotestosterone and a decrease in dihydroprogesterone and tetrahydroprogesterone levels were reported. This study shows for the first time that the levels of several neuroactive steroids, and particularly those of progesterone and testosterone metabolites, are deeply affected in CSF of relapsing-remitting MS male patients. We here demonstrated that, the cerebrospinal fluid and plasma levels of several neuroactive steroids are modified in relapsing remitting multiple sclerosis male patients. Interestingly, we reported for the first time that, the levels of progesterone and testosterone metabolites are deeply affected in cerebrospinal fluid. These findings may have an important relevance in therapeutic and/or diagnostic field of multiple sclerosis. PMID:24766130

  7. The initial rise method extended to multiple trapping levels in thermoluminescent materials.

    PubMed

    Furetta, C; Guzmán, S; Ruiz, B; Cruz-Zaragoza, E

    2011-02-01

    The well known Initial Rise Method (IR) is commonly used to determine the activation energy when only one glow peak is presented and analysed in the phosphor materials. However, when the glow peak is more complex, a wide peak and some holders appear in the structure. The application of the Initial Rise Method is not valid because multiple trapping levels are considered and then the thermoluminescent analysis becomes difficult to perform. This paper shows the case of a complex glow curve structure as an example and shows that the calculation is also possible using the IR method. The aim of the paper is to extend the well known Initial Rise Method (IR) to the case of multiple trapping levels. The IR method is applied to minerals extracted from Nopal cactus and Oregano spices because the thermoluminescent glow curve's shape suggests a trap distribution instead of a single trapping level. PMID:21051238

  8. Levels of chemical and microbiological pollutants in the vicinity of a waste incineration plant and human health risks: temporal trends.

    PubMed

    Vilavert, Lolita; Nadal, Martí; Figueras, María J; Kumar, Vikas; Domingo, José L

    2011-09-01

    In 2007, a program was initiated to monitor air levels of volatile organic compounds (VOCs) and bioaerosols in the vicinity of a municipal solid waste incinerator (MSWI) (Tarragona, Catalonia, Spain). To investigate the temporal trends of chemical and microbiological pollutants, four 6-monthly campaigns were performed. Air samples were collected at different distances and directions from the facility, as well as in reference sites. In general terms, the concentrations of microbiological agents were very similar to those found in urban zones worldwide. The seasonal evaluation of the results showed higher levels of gram-negative bacteria in winter, contrasting with the increase of the airborne amount of total bacteria in summer. On the other hand, the concentrations of VOCs (mean range: 7.6-18.2 μg m(-3)) were typical of suburban zones. The current exposure to those compounds should not mean additional health risks for the population living nearby. PMID:21550630

  9. Improving the Readability of ASR Results for Lectures Using Multiple Hypotheses and Sentence-Level Knowledge

    NASA Astrophysics Data System (ADS)

    Fujii, Yasuhisa; Yamamoto, Kazumasa; Nakagawa, Seiichi

    This paper presents a novel method for improving the readability of automatic speech recognition (ASR) results for classroom lectures. Because speech in a classroom is spontaneous and contains many ill-formed utterances with various disfluencies, the ASR result should be edited to improve the readability before presenting it to users, by applying some operations such as removing disfluencies, determining sentence boundaries, inserting punctuation marks and repairing dropped words. Owing to the presence of many kinds of domain-dependent words and casual styles, even state-of-the-art recognizers can only achieve a 30-50% word error rate for speech in classroom lectures. Therefore, a method for improving the readability of ASR results is needed to make it robust to recognition errors. We can use multiple hypotheses instead of the single-best hypothesis as a method to achieve a robust response to recognition errors. However, if the multiple hypotheses are represented by a lattice (or a confusion network), it is difficult to utilize sentence-level knowledge, such as chunking and dependency parsing, which are imperative for determining the discourse structure and therefore imperative for improving readability. In this paper, we propose a novel algorithm that infers clean, readable transcripts from spontaneous multiple hypotheses represented by a confusion network while integrating sentence-level knowledge. Automatic and manual evaluations showed that using multiple hypotheses and sentence-level knowledge is effective to improve the readability of ASR results, while preserving the understandability.

  10. Topology-optimized multiple-disk resonators obtained using level set expression incorporating surface effects.

    PubMed

    Fujii, Garuda; Ueta, Tsuyoshi; Mizuno, Mamoru; Nakamura, Masayuki

    2015-05-01

    Topology-optimized designs of multiple-disk resonators are presented using level-set expression that incorporates surface effects. Effects from total internal reflection at the surfaces of the dielectric disks are precisely simulated by modeling clearly defined dielectric boundaries during topology optimization. The electric field intensity in optimal resonators increases to more than four and a half times the initial intensity in a resonant state, whereas in some cases the Q factor increases by three and a half times that for the initial state. Wavelength-scale link structures between neighboring disks improve the performance of the multiple-disk resonators. PMID:25969226

  11. A satellite-based analysis of temporal dynamics in tropospheric nitrogen dioxide levels over large urban agglomerations worldwide

    NASA Astrophysics Data System (ADS)

    Schneider, Philipp; van der A, Ronald; Valdebenito, Alvaro

    2014-05-01

    Satellite observations allow for a consistent perspective on tropospheric nitrogen dioxide at a global scale and their operational status facilitates studies on multi-annual to decadal temporal dynamics. Utilizing close to a decade of data from the SCanning Imaging Absorption SpectroMeter for Atmospheric CHartographY (SCIAMACHY) and the Ozone Monitoring Instrument (OMI) sensors, we present in this contribution a global analysis of the temporal dynamics in tropospheric nitrogen dioxide over the worlds' major urban agglomerations during the last 10 years. The results indicate that while levels of nitrogen dioxide have been slowly declining in most areas of the United States and Europe over the last decade, very rapid increases in tropospheric nitrogen dioxide can be observed over many megacities and other large urban agglomerations throughout most of Asia, often with highly significant trends. Particularly in Eastern China, increases of 10 to 20 percent per year are quite widespread. Some of the large urban agglomerations with the most rapid increase in nitrogen dioxide pollution are Dhaka in Bangladesh, Kabul in Afghanistan, and Tianjin in China, and these are investigated in more detail. An inter-comparison of trends derived separately from SCIAMACHY and OMI shows that in terms of spatial patterns the resulting trends agree quite well between the two instruments, particularly in the more polluted areas. However, at the individual grid cell level substantial differences can be found. In addition, the satellite-based trends in tropospheric nitrogen dioxide levels were compared to those obtained from the European Monitoring and Evaluation Programme (EMEP) chemical transport model over the same time period, and furthermore sampling the model at the same time of day as the satellite overpass, thus eliminating the impact of the distinct diurnal cycle of nitrogen dioxide. While generally a good correspondence in the trends has been found between the two data sources

  12. Temporal aspects of increases in eye-neck activation levels during visually deficient near work.

    PubMed

    Richter, Hans O; Camilla, Lodin; Forsman, Mikael

    2012-01-01

    In an experimental study two levels of oculomotor load were induced via optical trial lenses. Trapezius muscle activity was measured with bipolar surface electromyography and normalized to a submaximal contraction. Sixty-six subjects with a median age of 36 (range 19-47, std 8) viewed a black and white Gabor grating (5 c/deg) for two 7-min periods monocularly through a 0 D lens or binocularly through -3.5 D lenses. The effect of time was separately regressed to EMG in two different subgroups of responders: a High-Oculomotor-Load (HOL) and a Low-Oculomotor-Load (LOL) group. A linear regression model was fitted on group level with exposure time on the x-axis and normalized trapezius muscle EMG (%RVE) on the y-axis. The slope coefficient was significantly positive in the -D blur condition for only the HOL subgroup of responders: 0.926 + Time(min 1-7) × 0.088 (p = 0.002, r(2)=0.865). There was no obvious sign of this activity to level off or to stabilize. These results suggest that professional information technology users that are exposed to a high level of oculomotor load, during extended times, are at an increased risk of exhibiting an increased trap.m. activity. PMID:22317234

  13. Spatio-temporal variability of relative sea-level change across the Eocene-Oligocene transition

    NASA Astrophysics Data System (ADS)

    Stocchi, Paolo; Pekar, Stephen; Houben, Alexander; DeConto, Robert; Escutia, Carlota; Vermeersen, Bert; Pollard, David; Bijl, Peter; Rugenstein, Maria; Brinkhuis, Henk; Wade, Bridget; Galeotti, Simone

    2013-04-01

    The first glaciation of Antarctica marks the Eocene-Oligocene transition (EOT; ~34 Myr ago) with a contrasting signal of relative sea-level (rsl) change between the ice-sheet proximal and the far-field marginal marine settings. The Northern Hemisphere sites (New Jersey, Alabama, Northern Italy) record, in fact, a 50 - 80 m rsl drop, which is in line with the eustatic trend. Conversely, the sedimentary facies in the proximity of the Antarctic ice-sheet show that rsl locally rose up to 150 m. Accounting for the mutual gravitational attraction between the Antarctic ice-sheet and the ocean is a necessary first requirement to solve this apparent paradox. The newly formed ice-sheet, in fact, would cause the sea level to rise in the proximity of the ice-sheet margins while poles apart the sea-level drop would be ~20% larger than the eustatic. Furthermore, the uneven redistribution of the surface load (ice and meltwater) between the continents and the oceans would cause the solid Earth to deform and consequently the equipotential surface of gravity (mean sea surface) to change. At last, but not least, the ice-sheet thickness variations and the consequent meltwater redistribution would cause the rotation pole to move, with a consequent effect on the sea level. In this work we account for these intimately related feedbacks which define the Glacial Isostatic Adjustment (GIA process by solving the gravitationally self-consistent Sea Level Equation (SLE) for a Maxwell viscoelastic and rotating earth model. We force the SLE with a new thermo-mechanical ice-sheet model for the EOT glaciation driven by the variations of atmospheric CO2 concentrations. We show that the geological data are sensitive to the strong latitude-dependent GIA process.

  14. Geographical and Temporal Differences in NOAA Observed Ground-Level Ozone in the Arctic

    NASA Astrophysics Data System (ADS)

    McClure-Begley, Audra; Petropavlovskikh, Irina; Andrews, Betsy; Hageman, Derek; Oltmans, Samuel; Uttal, Taneil

    2016-04-01

    The Arctic region is rapidly gaining interest and support for scientific studies to help understand and characterize the processes, sources, and chemical composition of the Arctic environment. In order to understand the Arctic climate system and the changes that are occurring, it is imperative to know the behavior and impact of atmospheric constituents. Surface level ozone in the Arctic is variable in both time and space and plays an essential role on the oxidation capacity of the atmosphere. NOAA Global Monitoring Division (NOAA/GMD) maintains continuous measurements and long-term records of ground-level ozone from Barrow, Alaska (since 1973) and Summit, Greenland (since 2000). Measurements taken by Thermo-Scientific ozone monitors are collected and examined with the NOAA/GMD Aerosol LiveCPD acquisition and software. These quality controlled data are used to develop seasonal climatologies, understand diurnal variation, and analyze differences in stations specifics by addressing spatial variability in the Arctic. Once typical ozone behavior is characterized, anomalies in the record are defined and investigated. Increased ozone events associated with transported pollution and photochemical production of ozone, and ozone depletion episodes related to sea-ice halogen release and chemical destruction of ozone are the primary processes which lead to deviations from typical ground-level ozone conditions. The measurements taken from Barrow and Summit are a critical portion of the IASOA network of observations of ground-level ozone and are investigated to ensure proper data management and quality control, as well as provide the fundamental understanding of ground-level ozone behavior in the Arctic.

  15. Comparison of Single-Level and Multiple-Level Outcomes of Total Disc Arthroplasty: 24-Month Results

    PubMed Central

    Ritter-Lang, Karsten; Gössel, Lutz; Dreßler, Nadine

    2015-01-01

    Background Low back pain is one of the most prevalent problems in industrialized countries, affecting as many as 80% of all adults at some time in their lives. Among the significant contributors to low back pain is degenerative disc disease (DDD). Although fusion has been well accepted for treatment of DDD, high rates of complications and stress to adjacent segments remain a concern. Lumbar total disc replacement (TDR) was developed with a goal of preserving motion and avoiding various fusion-related complications, but the relative merits of single vs. multiple level arthroplasty remain unclear. Methods This is a multi-center, single arm, prospective post-market registry of the M6-L, consisting of consecutive patients presenting with lumbar DDD who agreed to participate. This paper reports on those patients who have completed at least 24 months of followup to date. Clinical outcome measures include the Oswestry Disability Index (ODI) and back and leg Visual Analogue Scales (VAS). Radiographic analysis of disc angle and range of motion (ROM) was also performed. Results Results for 83 patients comprising 121 implants in two cohorts (49 single level (SL), 34 multiple levels (ML)) are reported. Both cohorts experienced significant improvement at 24 months including significant decreases in ODI and VAS. Relative to SL procedures, ML procedures demonstrated either comparable results, or results that trended favorably towards the ML procedures. Index and global ROM at 24 months were not significantly different between the two cohorts, while the disc angles were larger in the SL cohort regardless of index level. Conclusions This is the first study to report clinical and radiographic outcomes of TDR with the M6-L in SL vs ML procedures with two years of followup. The results suggest initial device safety and effectiveness when used for the treatment of lumbar degenerative disc disease at one or more levels. PMID:26056629

  16. Levels of uninvolved immunoglobulins predict clinical status and progression-free survival for multiple myeloma patients.

    PubMed

    Harutyunyan, Nika M; Vardanyan, Suzie; Ghermezi, Michael; Gottlieb, Jillian; Berenson, Ariana; Andreu-Vieyra, Claudia; Berenson, James R

    2016-07-01

    Multiple myeloma (MM) is characterized by the enhanced production of the same monoclonal immunoglobulin (M-Ig or M protein). Techniques such as serum protein electrophoresis and nephelometry are routinely used to quantify levels of this protein in the serum of MM patients. However, these methods are not without their shortcomings and problems accurately quantifying M proteins remain. Precise quantification of the types and levels of M-Ig present is critical to monitoring patient response to therapy. In this study, we investigated the ability of the HevyLite (HLC) immunoassay to correlate with clinical status based on levels of involved and uninvolved antibodies. In our cohort of MM patients, we observed that significantly higher ratios and greater differences of involved HLC levels compared to uninvolved HLC levels correlated with a worse clinical status. Similarly, higher absolute levels of involved HLC antibodies and lower levels of uninvolved HLC antibodies also correlated with a worse clinical status and a shorter progression-free survival. These findings suggest that the HLC assay is a useful and a promising tool for determining the clinical status and survival time for patients with multiple myeloma. PMID:27017948

  17. On The Choce of The Temporal Aggregation Level For Statistical Downscaling For Precipitation

    NASA Astrophysics Data System (ADS)

    Shabalova, M. V.; Buishand, T. A.

    Statistical downscaling methods are used in hydrological applications to translate cli- mate change scenarios generated by GCMs to the finer spatial grids. In these meth- ods the present-day statistical relationships between the local precipitation and atmo- spheric predictor variables are used to predict the change in precipitation given the changes in predictors. The predictors thus should be realistically modelled by GCMs and should fully represent the climate change signal. The proper choice of the tem- poral aggregation level of the data in statistical relationships is crucial. An inadequate choice may exclude vital for climate change predictors as statistically not significant. The chosen aggregation level also affects the sensitivity of the downscaling model to changes in predictors, as well as the model's efficiency. The results from various downscaling models for daily and monthly rainfall occurrence and amount developed in the class of generalised linear models for a number of stations in the River Rhine basin are discussed.

  18. The Evaluation of Spatial Fluctuations and Temporal Variability in Estimated Levels of THMs in Drinking Water

    NASA Astrophysics Data System (ADS)

    Ristoiu, D.; Haiduc, I.; Culea, M.; Mocan, A.; Chira, R.; Vancea, S.

    2007-04-01

    Chlorine, used by municipal water treatment facilities to disinfect water, reacts with naturally occurring organic matter to produce a host of compounds known as disinfection by-products. In addition to chloroform, brominated species such as bromodichloromethane, dibromochloromethane, and bromoform may also be formed if bromide is present in the source water. Together, these volatile compounds comprise the trihalomethanes (THMs). The results presented in this paper shown that the THM levels were higher in the summer relative to other seasons.

  19. The Spatial and Temporal Variability of Sea Level Change along the North American East Coast

    NASA Astrophysics Data System (ADS)

    Davis, J. L.; Han, D.; Oh, B.; Chen, C.

    2014-12-01

    Understanding the nature of sea-level change (SLC) is of paramount importance to, and a significant aspect of the future well being of, coastal towns and ecosystems. The east coast of North America is particularly susceptible to the impacts of SLC because its high economic productivity and population density compound the possible damage that could occur to the region. Moreover, predictions regarding the near-term and long-term future effects of SLC in this region are inconclusive because there is uncertainty regarding its long-term causes. As a result, the findings of a study of the various components of sea-level change on the U.S. East Coast will be presented. A model for SLC on the East Coast will be developed consisting of SLC due to thermosteric changes, glacial isostatic adjustment, and gravitationally self-consistent calculations for SLC due to present-day melting from Greenland and other areas from GRACE data. Tide gauges along the coast will be used to provide observational constraints on SLC. The models will include scenarios for the time-dependence of SLC. The comparison between data and models will be used to assess the current level of understanding of SLC in this region on a wide range of timescales.

  20. Serum Vitamin B12 and thyroid hormone levels in Saudi patients with multiple sclerosis

    PubMed Central

    Al-Khamis, Fahd A.

    2016-01-01

    Objectives: To determine the relationship between Vitamin B12 levels and thyroid hormones in patients with multiple sclerosis (MS). Materials and Methods: One hundred and ten patients with MS were recruited for this study after Institutional Review Board approval. All patients signed a written informed consent form and donated a single blood sample. Plasma Vitamin B12 levels, triiodothyronine (T3), and thyroxine (T4) hormone levels were measured. Data were analyzed using the Statistical Package for Social Sciences (SPSS) software. Results: Analysis of Vitamin B12 levels in 110 patients with MS revealed that 65% had normal levels of Vitamin B12 (200–900 pg/ml), 30% had low levels of Vitamin B12 (<200 pg/ml), and 5% high levels of Vitamin B12 (higher than 900 pg/ml). Further analysis of patients with low levels of Vitamin B12 revealed that this cohort exhibited a significantly high number of patients with low levels of the thyroid hormones triiodothyronine (T3) and thyroxine (T4) (P < 0.005). Conclusion: This study suggests a relationship between Vitamin B12 levels and thyroid hormones. This opens the possibility that the use of therapies that increase triiodothyronine (T3) and thyroxine (T4) levels might be beneficial to patients with MS. PMID:27625581

  1. Air-soil exchange of PCBs: levels and temporal variations at two sites in Turkey.

    PubMed

    Yolsal, Didem; Salihoglu, Güray; Tasdemir, Yücel

    2014-03-01

    Seasonal distribution of polychlorinated biphenyls (PCBs) at the air-soil intersection was determined for two regions: one with urban characteristics where traffic is dense (BUTAL) and the other representing the coastal zone (Mudanya). Fifty-one air and soil samples were simultaneously collected. Total PCB (Σ82 PCB) levels in the soil samples collected during a 1-year period ranged between 105 and 7,060 pg/g dry matter (dm) (BUTAL) and 110 and 2,320 pg/g dm (Mudanya). Total PCB levels in the gaseous phase were measured to be between 100 and 910 pg/m(3) (BUTAL) and 75 and 1,025 pg/m(3) (Mudanya). Variations in the concentrations were observed depending on the season. Though the PCB concentrations measured in the atmospheres of both regions in the summer months were high, they were found to be lower in winter. However, while soil PCB levels were measured to be high at BUTAL during summer months, they were found to be high during winter months in Mudanya. The direction and amount of the PCB movement were determined by calculating the gaseous phase change fluxes at air-soil intersection. While a general PCB movement from soil to air was found for BUTAL, the PCB movement from air to soil was calculated for the Mudanya region in most of the sampling events. During the warmer seasons PCB movement towards the atmosphere was observed due to evaporation from the soil. With decreases in the temperature, both decreases in the number of PCB congeners occurring in the air and a change in the direction of some congeners were observed, possibly caused by deposition from the atmosphere to the soil. 3-CB and 4-CB congeners were found to be dominant in the atmosphere, and 4-, 5-, and 6-CBs were found to dominate in the surface soils. PMID:24293299

  2. Observed cloud level circulation on Venus - Temporal variations and solar longitude dependence

    NASA Technical Reports Server (NTRS)

    Limaye, Sanjay Shridhar

    1987-01-01

    This paper presents data on the atmospheric circulation of Venus, obtained by the Mariner 10 (1974) and Pioneer (1979-1986) observations. The results yielded evidence of relatively stable zonal circulation at the cloud level. On the other hand, changes on a yearly time scale appear in both the zonal and the meridional components of motion. Solar thermal tides and large-scale planetary waves are also seen in averaged zonal and meridional cloud motions. The relationship between the large-scale circulation and global cloud structure is discussed.

  3. Temporal Levels of Urinary Neonicotinoid and Dialkylphosphate Concentrations in Japanese Women Between 1994 and 2011.

    PubMed

    Ueyama, Jun; Harada, Kouji H; Koizumi, Akio; Sugiura, Yuka; Kondo, Takaaki; Saito, Isao; Kamijima, Michihiro

    2015-12-15

    Over the last two decades, usage of neonicotinoid (NEO) insecticides has increased due to their high selectivity for insects versus mammals and their effectiveness for extermination of insects resistant to conventional pesticides such as pyrethroids and organophosphates (OPs). However, historical change of the NEO exposure level in humans is poorly understood. The aim of this study is to reveal changes in the levels of NEO and OP exposure in the human body over the last two decades using biomonitoring technique. We quantified urinary concentrations of 7 NEOs (acetamiprid, clothianidin, dinotefuran, imidacloprid, nitenpyram, thiacloprid, and thiamethoxam) and 4 metabolites of OPs (dimethylphosphate, dimethylthiophosphate, diethylphosphate, and diethylthiophosphate) in 95 adult females aged 45-75 in 1994, 2000, 2003, 2009, and 2011 (n = 17-20 different individuals in each year). The results show that the detection rates of urinary NEOs in Japanese women increased significantly between 1994 and 2011, suggesting that intakes of NEOs into the human body rose during that period. In contrast, exposure to OPs having O,O-dimethyl moieties decreased steadily according to a finding that geometric means of urinary dimethylphosphate concentrations kept diminishing considerably. These changes may reflect the amounts of NEOs and OPs used as insecticides in Japan. PMID:26556224

  4. Temporal Assessment of the Impact of Exposure to Cow Feces in Two Watersheds by Multiple Host-Specific PCR Assays

    EPA Science Inventory

    Exposure to feces in two watersheds with different management histories was assessed by tracking cattle feces bacterial populations using multiple host-specific PCR assays. In addition, environmental factors affecting the occurrence of these markers were identified. Each assay wa...

  5. Structural invariance of multiple intelligences, based on the level of execution.

    PubMed

    Almeida, Leandro S; Prieto, María Dolores; Ferreira, Arístides; Ferrando, Mercedes; Ferrandiz, Carmen; Bermejo, Rosario; Hernández, Daniel

    2011-11-01

    The independence of multiple intelligences (MI) of Gardner's theory has been debated since its conception. This article examines whether the one- factor structure of the MI theory tested in previous studies is invariant for low and high ability students. Two hundred ninety-four children (aged 5 to 7) participated in this study. A set of Gardner's Multiple Intelligence assessment tasks based on the Spectrum Project was used. To analyze the invariance of a general dimension of intelligence, the different models of behaviours were studied in samples of participants with different performance on the Spectrum Project tasks with Multi-Group Confirmatory Factor Analysis (MGCFA). Results suggest an absence of structural invariance in Gardner's tasks. Exploratory analyses suggest a three-factor structure for individuals with higher performance levels and a two-factor structure for individuals with lower performance levels. PMID:22047880

  6. Formation of multiple levels of porous silicon for buried insulators and conductors in silicon device technologies

    DOEpatents

    Blewer, Robert S.; Gullinger, Terry R.; Kelly, Michael J.; Tsao, Sylvia S.

    1991-01-01

    A method of forming a multiple level porous silicon substrate for semiconductor integrated circuits including anodizing non-porous silicon layers of a multi-layer silicon substrate to form multiple levels of porous silicon. At least one porous silicon layer is then oxidized to form an insulating layer and at least one other layer of porous silicon beneath the insulating layer is metallized to form a buried conductive layer. Preferably the insulating layer and conductive layer are separated by an anodization barrier formed of non-porous silicon. By etching through the anodization barrier and subsequently forming a metallized conductive layer, a fully or partially insulated buried conductor may be fabricated under single crystal silicon.

  7. Multiple drivers of Holocene lake level changes at a lowland lake in northeastern Germany

    NASA Astrophysics Data System (ADS)

    Dietze, Elisabeth; Słowiński, Michał; Zawiska, Izabela; Veh, Georg; Brauer, Achim

    2016-04-01

    Many northeastern German lakes experienced significant water level drops in the recent past, which were attributed to global climate change, but due to the short observation period not fully understood. At lake Fürstenseer See, a groundwater-fed lake with complex basin morphology within the Müritz national park, an acoustic sub-bottom profile was analyzed together with a transect of four sediment cores to assess full Holocene water level amplitudes and the evolution of lake level changes during the Holocene. At core sites in 10 and 15 m water depth, past shifts in the sediment limit, i.e. the limit between preferential sand and mud deposition depending on absolute lake level, allowed to quantify an 8 m maximum Holocene amplitude of lake level changes (+4 m higher to -4 m lower stands), which clearly exceeded the observed fluctuations of 1.3 m between 1973 and 2013. At sites in 20 and 23 m water depth, changes in sediment facies reflected lake level changes qualitatively. During high lake stands massive organic muds were deposited in the deepest part of the lake basin, whereas during lower lake levels sub-basins became isolated causing an exceedance of the thresholds for carbonate accumulation. The highly-resolved continuous m-XRF-Calcium record of the longest core resembles these sediment facies shifts and allows to determine a relative Holocene lake level history. However, temporal interpretation of the causes and conditions that link carbonate preservation with local water level changes was rather complex and non-stationary. Apart from glaciological and climatic reasons also eco-hydrological feedbacks (i.e. vegetation composition affecting groundwater recharge) and anthropogenic triggers will be discussed in detail. This is a contribution to the Virtual Institute of Integrated Climate and Landscape Evolution Analysis (ICLEA) and the Terrestrial Environmental Observatories network (TERENO) financed by the Helmholtz Association.

  8. In pursuit of an accurate spatial and temporal model of biomolecules at the atomistic level: a perspective on computer simulation

    PubMed Central

    Gray, Alan; Harlen, Oliver G.; Harris, Sarah A.; Khalid, Syma; Leung, Yuk Ming; Lonsdale, Richard; Mulholland, Adrian J.; Pearson, Arwen R.; Read, Daniel J.; Richardson, Robin A.

    2015-01-01

    Despite huge advances in the computational techniques available for simulating biomolecules at the quantum-mechanical, atomistic and coarse-grained levels, there is still a widespread perception amongst the experimental community that these calculations are highly specialist and are not generally applicable by researchers outside the theoretical community. In this article, the successes and limitations of biomolecular simulation and the further developments that are likely in the near future are discussed. A brief overview is also provided of the experimental biophysical methods that are commonly used to probe biomolecular structure and dynamics, and the accuracy of the information that can be obtained from each is compared with that from modelling. It is concluded that progress towards an accurate spatial and temporal model of biomacromolecules requires a combination of all of these biophysical techniques, both experimental and computational. PMID:25615870

  9. The spatial and temporal variability of the seasonal mean sea level cycle in the South China Sea

    NASA Astrophysics Data System (ADS)

    Muhaimin Amiruddin, Abd; Haigh, Ivan; Tsimplis, Mikis; Calafat, Francisco; Dangendorf, Soenke

    2015-04-01

    The seasonal cycle is the most energetic component of mean sea level variability and changes in either its amplitude or phase can seriously impact the risk of coastal flooding. Here, tide gauge records and satellite altimetry observations, along with steric and meteorological data are used to investigate the spatial and temporal variability of the seasonal cycle in the South China Sea (SCS) and its forcing mechanisms. The coastal annual amplitude varies significantly from region to region with values ranging from 2 cm to 24 cm, and generally peaks between July and January. The coastal semi-annual amplitude has maximum values of 7 cm, and it peaks between March and June. Along the coast, the seasonal cycle accounts on average for 60% with maximum values of up to 92% of the mean monthly sea level variability. Atmospheric pressure fluctuations explain a significant portion of the seasonal cycle with dominant annual signals in the northern SCS, the Gulf of Thailand and the north-western Philippines Sea. The wind forcing is dominant on the shelf areas of the SCS and the Gulf of Thailand where a simple barotropic model forced by local wind shows amplitudes of up to 27 cm. In the deep basin of the SCS, the Philippines Sea and the shallow Malacca Strait, the steric component is the major contributor with maximum annual amplitudes of up to 15 cm. Significant variability in the annual and semi-annual cycle is found on a year-to-year basis. The annual and semi-annual amplitudes vary by up to 63% and 45% of the maximum values, 15 cm and 11 cm, respectively. On average, stepwise regression analysis of contribution of different forcing factors accounts for 69% of the temporal variability of the annual cycle. The zonal wind and the cross-shore wind were found to exert considerable influence in the Malacca Strait and the northern SCS respectively.

  10. Physically feasible three-level transitionless quantum driving with multiple Schrödinger dynamics

    NASA Astrophysics Data System (ADS)

    Song, Xue-Ke; Ai, Qing; Qiu, Jing; Deng, Fu-Guo

    2016-05-01

    Three-level quantum systems, which possess some unique characteristics beyond two-level ones, such as electromagnetically induced transparency, coherent trapping, and Raman scatting, play important roles in solid-state quantum information processing. Here, we introduce an approach to implement the physically feasible three-level transitionless quantum driving with multiple Schrödinger dynamics (MSDs). It can be used to control accurately population transfer and entanglement generation for three-level quantum systems in a nonadiabatic way. Moreover, we propose an experimentally realizable hybrid architecture, based on two nitrogen-vacancy-center ensembles coupled to a transmission line resonator, to realize our transitionless scheme which requires fewer physical resources and simple procedures, and it is more robust against environmental noises and control parameter variations than conventional adiabatic passage techniques. All these features inspire the further application of MSDs on robust quantum information processing in experiment.

  11. Electromagnetically induced transparency in an inhomogeneously broadened {Lambda} transition with multiple excited levels

    SciTech Connect

    Mishina, O. S.; Scherman, M.; Lombardi, P.; Ortalo, J.; Bramati, A.; Laurat, J.; Giacobino, E.; Felinto, D.; Sheremet, A. S.; Kupriyanov, D. V.

    2011-05-15

    Electromagnetically induced transparency (EIT) has mainly been modeled for three-level systems. In particular, considerable interest has been dedicated to the {Lambda} configuration, with two ground states and one excited state. However, in the alkali-metal atoms, which are commonly used, the hyperfine interaction in the excited state introduces several levels which simultaneously participate in the scattering process. When the Doppler broadening is comparable with the hyperfine splitting in the upper state, the three-level {Lambda} model does not reproduce the experimental results. Here we theoretically investigate the EIT in a hot vapor of alkali-metal atoms and demonstrate that it can be strongly reduced by the presence of multiple excited levels. Given this model, we also show that well-designed optical pumping enables us to significantly recover the transparency.

  12. Melatonin receptor deficiency decreases and temporally shifts ecto-5'-nucleotidase mRNA levels in mouse prosencephalon.

    PubMed

    Homola, Moran; Pfeffer, Martina; Robson, Simon C; Fischer, Claudia; Zimmermann, Herbert; Korf, Horst-Werner

    2016-07-01

    Ecto-5'-nucleotidase (eN) is the major extracellular adenosine-producing ecto-enzyme in mouse brain. Via the production of adenosine, eN participates in many physiological and pathological processes, such as wakefulness, inflammation, nociception and neuroprotection. The mechanisms regulating the expression of eN are therefore of considerable neurobiological and clinical interest. Having previously described a modulatory effect of melatonin in the regulation of eN mRNA levels, we decided to analyze the melatonin receptor subtype involved in the regulation of eN mRNA levels by comparing eN mRNA patterns in melatonin-proficient transgenic mice lacking either the melatonin receptor subtype 1 (MT1 KO) or both melatonin receptor subtypes (MT1 and MT2; MT1/2 KO) with the corresponding melatonin-proficient wild-type (WT) controls. By means of radioactive in situ hybridization, eN mRNA levels were found to be diminished in both MT1 and MT1/2 KO mice compared with WT controls suggesting stimulatory impacts of melatonin receptors on eN mRNA levels. Whereas eN mRNA levels increased during the day and peaked at night in WT and MT1 KO mice, eN mRNA levels at night were reduced and the peak was shifted toward day-time in double MT1/2 KO mice. These data suggest that the MT2 receptor subtype may play a role in the temporal regulation of eN mRNA availability. Notably, day-time locomotor activity was significantly higher in MT1/2 KO compared with WT mice. Our results suggest melatoninergic signaling as an interface between the purinergic system and the circadian system. PMID:26917036

  13. Commensal Rodents in the City of Buenos Aires: A Temporal, Spatial, and Environmental Analysis at the Whole City Level.

    PubMed

    Cavia, Regino; Muschetto, Emiliano; Cueto, Gerardo Rubén; Suárez, Olga Virginia

    2015-09-01

    Commensal rodents are some of the main vertebrate pests in urban areas; however, knowledge about factors that favor them at large scales is scarce. We studied spatial and temporal variations in rodent infestation levels at the whole city scale using the complaints of rodent sightings and questionnaire surveys to city neighbors. Demographic, socio-economic, and environmental characteristics handled with a geographic information system were evaluated as possible indicators of rodent infestation. The number of rodent sightings was lower in months with low mean temperature with two months time lag and higher in areas with high number of meat and metal industries. Rodent infestation estimated by the questionnaire survey showed spatial autocorrelation defining large areas with similar infestation levels. It decreased when the apartment density increased, while increased when the proportion of area occupied by shantytowns, the density of meat industries, and the proportion of area occupied by moderate urban development increased. Rodent control programs at the whole city level would have better results if public health pest agencies and/or governments will focus the efforts on areas with more precarious conditions as well as the industrial areas in the cold season when have lower rodent abundances. PMID:25681115

  14. Understanding epigenetic regulation: Tracking protein levels across multiple generations of cells

    NASA Astrophysics Data System (ADS)

    Rowat, A. C.; Weitz, D. A.

    2009-11-01

    Cells and organisms are remarkably robust: they alter the variety and levels of expressed genes and proteins in response to environmental stimuli, including temperature, chemicals, and the stiffness of their surroundings. Ultimately changes in gene and protein expression can result in a distinct phenotypic state, which in some cases is maintained over multiple generations; the ability to pass on a particular phenotypic state to progeny cells is critical for differentiation. Moreover, epigenetic regulation of phenotype is also thought to provide an evolutionary advantage for a population of cells adapting to a fluctuating environment on faster timescales than the occurrence of genetic mutations. However, simple methods to study patterns of gene and protein expression on multi-generational timescales are sparse. Here we describe a technique to study lineages of single cells over multiple generations using a microfluidic device; this reveals patterns of expression where protein levels are correlated across multiple generations. Such quantitative information of protein expression in the context of pedigree remains hidden when studying the population as an ensemble.

  15. A temporal and spatial analysis of ground-water levels for effective monitoring in Huron County, Michigan

    USGS Publications Warehouse

    Holtschlag, David J.; Sweat, M.J.

    1999-01-01

    Quarterly water-level measurements were analyzed to assess the effectiveness of a monitoring network of 26 wells in Huron County, Michigan. Trends were identified as constant levels and autoregressive components were computed at all wells on the basis of data from 1993 to 1997 using structural time series analysis. Fixed seasonal components were identified at 22 wells and outliers were identified at 23 wells. The 95-percent confidence intervals were forecast for water-levels during the first and second quarters of 1998. Intervals in the first quarter were consistent with 92.3 percent of the measured values. In the second quarter, measured values were with the forecast intervals only 65.4 percent of the time. Unusually low precipitation during the second quarter is thought to have contributed to the reduced reliability of the second-quarter forecasts. Spatial interrelations among wells were investigated on the basis of the autoregressive components, which were filtered to create a set of innovation sequences that were temporally uncorrelated. The empirical covariance among the innovation sequences indicated both positive and negative spatial interrelations. The negative covariance components are considered to be physically implausible and to have resulted from random sampling error. Graphical modeling, a form of multivariate analysis, was used to model the covariance structure. Results indicate that only 29 of the 325 possible partial correlations among the water-level innovations were statistically significant. The model covariance matrix, corresponding to the model partial correlation structure, contained only positive elements. This model covariance was sequentially partitioned to compute a set of partial covariance matrices that were used to rank the effectiveness of the 26 monitoring wells from greatest to least. Results, for example, indicate that about 50 percent of the uncertainty of the water-level innovations currently monitored by the 26-well network

  16. The impact of multiple low-level BCR-ABL1 mutations on response to ponatinib

    PubMed Central

    Yeung, David T. O.; Yeoman, Alexandra L.; Altamura, Haley K.; Jamison, Bronte A.; Field, Chani R.; Hodgson, J. Graeme; Lustgarten, Stephanie; Rivera, Victor M.; Hughes, Timothy P.; Branford, Susan

    2016-01-01

    The third-generation tyrosine kinase inhibitor (TKI) ponatinib shows activity against all common BCR-ABL1 single mutants, including the highly resistant BCR-ABL1-T315I mutant, improving outcome for patients with refractory chronic myeloid leukemia (CML). However, responses are variable, and causal baseline factors have not been well-studied. The type and number of low-level BCR-ABL1 mutations present after imatinib resistance has prognostic significance for subsequent treatment with nilotinib or dasatinib as second-line therapy. We therefore investigated the impact of low-level mutations detected by sensitive mass-spectrometry before ponatinib initiation (baseline) on treatment response in 363 TKI-resistant patients enrolled in the PONATINIB for Chronic Myeloid Leukemia Evaluation and Ph+ Acute Lymphoblastic Leukemia trial, including 231 patients in chronic phase (CP-CML). Low-level mutations were detected in 53 patients (15%, including low-level T315I in 14 patients); most, however, did not undergo clonal expansion during ponatinib treatment and, moreover, no specific individual mutations were associated with inferior outcome. We demonstrate however, that the number of mutations detectable by mass spectrometry after TKI resistance is associated with response to ponatinib treatment and could be used to refine the therapeutic approach. Although CP-CML patients with T315I (63/231, 27%) had superior responses overall, those with multiple mutations detectable by mass spectrometry (20, 32%) had substantially inferior responses compared with those with T315I as the sole mutation detected (43, 68%). In contrast, for CP-CML patients without T315I, the inferior responses previously observed with nilotinib/dasatinib therapy for imatinib-resistant patients with multiple mutations were not seen with ponatinib treatment, suggesting that ponatinib may prove to be particularly advantageous for patients with multiple mutations detectable by mass spectrometry after TKI resistance

  17. The impact of multiple low-level BCR-ABL1 mutations on response to ponatinib.

    PubMed

    Parker, Wendy T; Yeung, David T O; Yeoman, Alexandra L; Altamura, Haley K; Jamison, Bronte A; Field, Chani R; Hodgson, J Graeme; Lustgarten, Stephanie; Rivera, Victor M; Hughes, Timothy P; Branford, Susan

    2016-04-14

    The third-generation tyrosine kinase inhibitor (TKI) ponatinib shows activity against all common BCR-ABL1 single mutants, including the highly resistant BCR-ABL1-T315I mutant, improving outcome for patients with refractory chronic myeloid leukemia (CML). However, responses are variable, and causal baseline factors have not been well-studied. The type and number of low-level BCR-ABL1 mutations present after imatinib resistance has prognostic significance for subsequent treatment with nilotinib or dasatinib as second-line therapy. We therefore investigated the impact of low-level mutations detected by sensitive mass-spectrometry before ponatinib initiation (baseline) on treatment response in 363 TKI-resistant patients enrolled in the PONATINIB for Chronic Myeloid Leukemia Evaluation and Ph(+)Acute Lymphoblastic Leukemia trial, including 231 patients in chronic phase (CP-CML). Low-level mutations were detected in 53 patients (15%, including low-level T315I in 14 patients); most, however, did not undergo clonal expansion during ponatinib treatment and, moreover, no specific individual mutations were associated with inferior outcome. We demonstrate however, that the number of mutations detectable by mass spectrometry after TKI resistance is associated with response to ponatinib treatment and could be used to refine the therapeutic approach. Although CP-CML patients with T315I (63/231, 27%) had superior responses overall, those with multiple mutations detectable by mass spectrometry (20, 32%) had substantially inferior responses compared with those with T315I as the sole mutation detected (43, 68%). In contrast, for CP-CML patients without T315I, the inferior responses previously observed with nilotinib/dasatinib therapy for imatinib-resistant patients with multiple mutations were not seen with ponatinib treatment, suggesting that ponatinib may prove to be particularly advantageous for patients with multiple mutations detectable by mass spectrometry after TKI resistance

  18. Biologically Motivated Novel Localization Paradigm by High-Level Multiple Object Recognition in Panoramic Images

    PubMed Central

    Kim, Sungho; Shim, Min-Sheob

    2015-01-01

    This paper presents the novel paradigm of a global localization method motivated by human visual systems (HVSs). HVSs actively use the information of the object recognition results for self-position localization and for viewing direction. The proposed localization paradigm consisted of three parts: panoramic image acquisition, multiple object recognition, and grid-based localization. Multiple object recognition information from panoramic images is utilized in the localization part. High-level object information was useful not only for global localization, but also for robot-object interactions. The metric global localization (position, viewing direction) was conducted based on the bearing information of recognized objects from just one panoramic image. The feasibility of the novel localization paradigm was validated experimentally. PMID:26457323

  19. Temporal variability in urinary levels of drinking water disinfection byproducts dichloroacetic acid and trichloroacetic acid among men

    SciTech Connect

    Wang, Yi-Xin; Zeng, Qiang; Wang, Le; Huang, Yue-Hui; Lu, Zhi-Wei; Wang, Peng; He, Meng-Jie; Huang, Xin; Lu, Wen-Qing

    2014-11-15

    Urinary haloacetic acids (HAAs), such as dichloroacetic acid (DCAA) and trichloroacetic acid (TCAA), have been suggested as potential biomarkers of exposure to drinking water disinfection byproducts (DBPs). However, variable exposure to and the short elimination half-lives of these biomarkers can result in considerable variability in urinary measurements, leading to exposure misclassification. Here we examined the variability of DCAA and TCAA levels in the urine among eleven men who provided urine samples on 8 days over 3 months. The urinary concentrations of DCAA and TCAA were measured by gas chromatography coupled with electron capture detection. We calculated the intraclass correlation coefficients (ICCs) to characterize the within-person and between-person variances and computed the sensitivity and specificity to assess how well single or multiple urine collections accurately determined personal 3-month average DCAA and TCAA levels. The within-person variance was much higher than the between-person variance for all three sample types (spot, first morning, and 24-h urine samples) for DCAA (ICC=0.08–0.37) and TCAA (ICC=0.09–0.23), regardless of the sampling interval. A single-spot urinary sample predicted high (top 33%) 3-month average DCAA and TCAA levels with high specificity (0.79 and 0.78, respectively) but relatively low sensitivity (0.47 and 0.50, respectively). Collecting two or three urine samples from each participant improved the classification. The poor reproducibility of the measured urinary DCAA and TCAA concentrations indicate that a single measurement may not accurately reflect individual long-term exposure. Collection of multiple urine samples from one person is an option for reducing exposure classification errors in studies exploring the effects of DBP exposure on reproductive health. - Highlights: • We evaluated the variability of DCAA and TCAA levels in the urine among men. • Urinary DCAA and TCAA levels varied greatly over a 3-month

  20. Measuring the engagement level of children for multiple intelligence test using Kinect

    NASA Astrophysics Data System (ADS)

    Lee, Dongjin; Yun, Woo han; Park, Chan kyu; Yoon, H.; Kim, Jaehong; Park, C. H.

    2015-02-01

    In this paper, we present an affect recognition system for measuring the engagement level of children using the Kinect while performing a multiple intelligence test on a computer. First of all, we recorded 12 children while solving the test and manually created a ground truth data for the engagement levels of each child. For a feature extraction, Kinect for Windows SDK provides support for a user segmentation and skeleton tracking so that we can get 3D joint positions of an upper-body skeleton of a child. After analyzing movement of children, the engagement level of children's responses is classified into two classes: High or Low. We present the classification results using the proposed features and identify the significant features in measuring the engagement.

  1. Genetic variants are major determinants of CSF antibody levels in multiple sclerosis

    PubMed Central

    Pauwels, Ine; Gustavsen, Marte W.; van Son, Brechtje; Hilven, Kelly; Bos, Steffan D.; Celius, Elisabeth Gulowsen; Berg-Hansen, Pål; Aarseth, Jan; Myhr, Kjell-Morten; D’Alfonso, Sandra; Barizzone, Nadia; Leone, Maurizio A.; Martinelli Boneschi, Filippo; Sorosina, Melissa; Liberatore, Giuseppe; Kockum, Ingrid; Olsson, Tomas; Hillert, Jan; Alfredsson, Lars; Bedri, Sahl Khalid; Hemmer, Bernhard; Buck, Dorothea; Berthele, Achim; Knier, Benjamin; Biberacher, Viola; van Pesch, Vincent; Sindic, Christian; Bang Oturai, Annette; Søndergaard, Helle Bach; Sellebjerg, Finn; Jensen, Poul Erik H.; Comabella, Manuel; Montalban, Xavier; Pérez-Boza, Jennifer; Malhotra, Sunny; Lechner-Scott, Jeannette; Broadley, Simon; Slee, Mark; Taylor, Bruce; Kermode, Allan G.; Gourraud, Pierre-Antoine; Sawcer, Stephen J.; Andreassen, Bettina Kullle; Dubois, Bénédicte; Harbo, Hanne F.

    2015-01-01

    Immunological hallmarks of multiple sclerosis include the production of antibodies in the central nervous system, expressed as presence of oligoclonal bands and/or an increased immunoglobulin G index—the level of immunoglobulin G in the cerebrospinal fluid compared to serum. However, the underlying differences between oligoclonal band-positive and -negative patients with multiple sclerosis and reasons for variability in immunoglobulin G index are not known. To identify genetic factors influencing the variation in the antibody levels in the cerebrospinal fluid in multiple sclerosis, we have performed a genome-wide association screen in patients collected from nine countries for two traits, presence or absence of oligoclonal bands (n = 3026) and immunoglobulin G index levels (n = 938), followed by a replication in 3891 additional patients. We replicate previously suggested association signals for oligoclonal band status in the major histocompatibility complex region for the rs9271640*A-rs6457617*G haplotype, correlated with HLA-DRB1*1501, and rs34083746*G, correlated with HLA-DQA1*0301 (P comparing two haplotypes = 8.88 × 10−16). Furthermore, we identify a novel association signal of rs9807334, near the ELAC1/SMAD4 genes, for oligoclonal band status (P = 8.45 × 10−7). The previously reported association of the immunoglobulin heavy chain locus with immunoglobulin G index reaches strong evidence for association in this data set (P = 3.79 × 10−37). We identify two novel associations in the major histocompatibility complex region with immunoglobulin G index: the rs9271640*A-rs6457617*G haplotype (P = 1.59 × 10−22), shared with oligoclonal band status, and an additional independent effect of rs6457617*G (P = 3.68 × 10−6). Variants identified in this study account for up to 2-fold differences in the odds of being oligoclonal band positive and 7.75% of the variation in immunoglobulin G index. Both traits are associated with clinical features of disease such

  2. DeltaA/DeltaD regulate multiple and temporally distinct phases of notch signaling during dopaminergic neurogenesis in zebrafish.

    PubMed

    Mahler, Julia; Filippi, Alida; Driever, Wolfgang

    2010-12-01

    Dopaminergic neurons develop at distinct anatomical sites to form some of the major neuromodulatory systems in the vertebrate brain. Despite their relevance in neurodegenerative diseases and the interests in reconstitutive therapies from stem cells, mechanisms of the neurogenic switch from precursor populations to dopaminergic neurons are not well understood. Here, we investigated neurogenesis of different dopaminergic and noradrenergic neuron populations in the zebrafish embryo. Birth-dating analysis by EdU (5-ethynyl-2'-deoxyuridine) incorporation revealed temporal dynamics of catecholaminergic neurogenesis. Analysis of Notch signaling mutants and stage-specific pharmacological inhibition of Notch processing revealed that dopaminergic neurons form by temporally distinct mechanisms: dopaminergic neurons of the posterior tuberculum derive directly from neural plate cells during primary neurogenesis, whereas other dopaminergic groups form in continuous or wavelike neurogenesis phases from proliferating precursor pools. Systematic analysis of Notch ligands revealed that the two zebrafish co-orthologs of mammalian Delta1, DeltaA and DeltaD, control the neurogenic switch of all early developing dopaminergic neurons in a partially redundant manner. DeltaA/D may also be involved in maintenance of dopaminergic precursor pools, as olig2 expression in ventral diencephalic dopaminergic precursors is affected in dla/dld mutants. DeltaA/D act upstream of sim1a and otpa during dopaminergic specification. However, despite the fact that both dopaminergic and corticotropin-releasing hormone neurons derive from sim1a- and otpa-expressing precursors, DeltaA/D does not act as a lineage switch between these two neuronal types. Rather, DeltaA/D limits the size of the sim1a- and otpa-expressing precursor pool from which dopaminergic neurons differentiate. PMID:21148001

  3. Simultaneous Determination of Multiple microRNA Levels Utilizing Biotinylated Dideoxynucleotides and Mass Spectrometry.

    PubMed

    Kim, Sobin; Park, Jungyun; Na, Jeongkyeong; Jung, Gyoo Yeol; Hwang, Jungwook

    2016-01-01

    MicroRNAs (miRNAs) are important regulators of gene translation and have been suggested as potent biomarkers in various disease states. In this study, we established an efficient method for simultaneous determination of multiple miRNA levels, employing the previously developed SPC-SBE (solid phase capture-single base extension) approach and MALDI-TOF mass spectrometry (MS). In this approach, we first perform reverse transcription of miRNAs extracted using stem-loop primers. Then the cDNA is co-amplified with competitors, synthetic oligonucleotides whose sequences precisely match cDNA except for one base, and the amplicons serve as templates for a multiplexed SBE reaction. Extension products are isolated using SPC and quantitatively analyzed with MALDI-TOF MS to determine multiple miRNA levels. Here we demonstrated concurrent analysis of four miRNA levels utilizing the approach. Furthermore, we showed the presented method significantly facilitated MS analysis of peak area ratio owing to SPC. The SPC process allowed effective removal of irrelevant reaction components prior to MS and promoted MS sample purification. Data obtained in this study was verified with RT-qPCR and agreement was shown on one order of magnitude scale, suggesting the SPC-SBE and MS approach has strong potential as a viable tool for high throughput miRNA analysis. PMID:27380276

  4. Simultaneous Determination of Multiple microRNA Levels Utilizing Biotinylated Dideoxynucleotides and Mass Spectrometry

    PubMed Central

    Kim, Sobin; Park, Jungyun; Na, Jeongkyeong; Jung, Gyoo Yeol; Hwang, Jungwook

    2016-01-01

    MicroRNAs (miRNAs) are important regulators of gene translation and have been suggested as potent biomarkers in various disease states. In this study, we established an efficient method for simultaneous determination of multiple miRNA levels, employing the previously developed SPC-SBE (solid phase capture-single base extension) approach and MALDI-TOF mass spectrometry (MS). In this approach, we first perform reverse transcription of miRNAs extracted using stem-loop primers. Then the cDNA is co-amplified with competitors, synthetic oligonucleotides whose sequences precisely match cDNA except for one base, and the amplicons serve as templates for a multiplexed SBE reaction. Extension products are isolated using SPC and quantitatively analyzed with MALDI-TOF MS to determine multiple miRNA levels. Here we demonstrated concurrent analysis of four miRNA levels utilizing the approach. Furthermore, we showed the presented method significantly facilitated MS analysis of peak area ratio owing to SPC. The SPC process allowed effective removal of irrelevant reaction components prior to MS and promoted MS sample purification. Data obtained in this study was verified with RT-qPCR and agreement was shown on one order of magnitude scale, suggesting the SPC-SBE and MS approach has strong potential as a viable tool for high throughput miRNA analysis. PMID:27380276

  5. Differences in temporal order memory among young, middle-aged, and older adults may depend on the level of interference

    PubMed Central

    Rotblatt, Lindsay J.; Sumida, Catherine A.; Van Etten, Emily J.; Turk, Eva Pirogovsky; Tolentino, Jerlyn C.; Gilbert, Paul E.

    2015-01-01

    Age-related changes in temporal order memory have been well documented in older adults; however, little is known about this ability during middle age. We tested healthy young, middle-aged, and older adults on a previously published visuospatial temporal order memory test involving high and low interference conditions. When interference was low, young and middle-aged adults did not differ, but both groups significantly outperformed older adults. However, when interference was high, significant differences were found among all three age groups. The data provide evidence that temporal order memory may begin to decline in middle age, particularly when temporal interference is high. PMID:25852544

  6. Comparison of Antioxidant Status and Vitamin D Levels between Multiple Sclerosis Patients and Healthy Matched Subjects

    PubMed Central

    Hejazi, Ehsan; Amani, Reza; SharafodinZadeh, Naser; Cheraghian, Bahman

    2014-01-01

    Objective. The aim of the present study was to compare the serum levels of total antioxidant status (TAS) and 25(OH) D3 and dietary intake of multiple sclerosis (MS) patients with those of normal subjects. Method. Thirty-seven MS patients (31 women) and the same number of healthy matched controls were compared for their serum levels and dietary intake of 25(OH) D3 and TAS. Sun exposure and the intake of antioxidants and vitamin D rich foods were estimated through face-to-face interview and food frequency questionnaire. Results. Dietary intake of antioxidants and vitamin D rich foods, vitamin C, vitamin A, and folate was not significantly different between the two groups. There were also no significant differences in the mean levels of 25(OH) D3 and TAS between the study groups. Both groups had low serum levels of 25(OH) D3 and total antioxidants. Conclusion. No significant differences were detected in serum levels and dietary intake of vitamin D and antioxidants between MS patients and healthy controls. All subjects had low antioxidant status and vitamin D levels. PMID:24834356

  7. High levels of mercury contamination in multiple media of the Carson River Drainage Basin of Nevada: Implications for risk assessment

    SciTech Connect

    Gustin, M.S.; Taylor, G.E. Jr.; Leonard, T.L. Desert Research Institute, Reno, NV )

    1994-09-01

    Approximately 5.5 x 10[sup 9] g (4.0 x 10[sup 5] l) of mercury was discharged into the Carson River Drainage Basin of west-central Nevada during processing of the gold- and silver-rich Comstock ore in the late 1800s. For the past 13 decades, mercury has been redistributed throughout 500 km[sup 2] of the basin, and concentrations are some of the highest reported values in North America. This article documents the concentration of mercury in the air, water, and substrate at both contaminated and noncontaminated sites within the basin and discusses the implications for risk assessment. At contaminated areas, the range of mercury concentrations are as follows: mill tailings, 3-1610 [mu]g/g; unfiltered reservoir water, 53-591 ng/l; atmospheric vapor, 2-294 ng/m[sup 3]. These values are three to five orders of magnitude greater than natural background. In all media at contaminated sites, concentrations are spatially variable, and air and water mercury concentrations vary temporally. The study area is situated in a natural mercuriferous belt, and regional background mercury concentrations in all environmental media are higher than values typically cited for natural background. As a mercury-contaminated site in North America, the Carson River Drainage Basin is unusual for a number of reasons, including its location in a natural mercuriferous belt, high and sustained levels of anthropogenic mercury inputs, long exposure time, aridity of the climate, and the riparian setting in an arid landscape, where biological activity is concentrated in the same areas that contain high levels of mercury in multiple media. 37 refs., 4 figs., 3 tabs.

  8. High levels of mercury contamination in multiple media of the Carson River drainage basin of Nevada: implications for risk assessment.

    PubMed

    Gustin, M S; Taylor, G E; Leonard, T L

    1994-09-01

    Approximately 5.5 x 109 g (4.0 x 105) of mercury was discharged into the Carson River Drainage Basin of west-central Nevada during processing of the gold- and silver-rich Comstock ore in the late 1800s. For the past 13 decades, mercury has been redistributed throughout 500 km2 of the basin, and concentrations are some of the highest reported values in North America. This article documents the concentrations of mercury in the air, water, and substrate at both contaminated and noncontaminated sites within the basin and discusses the implications for risk assessment. At contaminated areas, the range of mercury concentrations are as follows: mill tailings, 3-1610 micrograms/g; unfiltered reservoir water, 53-591 ng/l; atmospheric vapor, 2-294 ng/m3. These values are three to five orders of magnitude greater than natural background. In all media at contaminated sites, concentrations are spatially variable, and air and water mercury concentrations vary temporally. The study are in situated in a natural mercuriferous belt, and regional background mercury concentrations in all environmental media are higher than values typically cited for natural background. As a mercury-contaminated site in North America, the Carson River Drainage Basin is unusual for a number of reasons, including its location in a natural mercuriferous belt, high and sustained levels of anthropogenic mercury inputs, long exposure time, aridity of the climate, and the riparian setting in an arid landscape, where biological activity is concentrated in the same areas that contain high levels of mercury in multiple media. PMID:9657709

  9. High levels of mercury contamination in multiple media of the Carson River drainage basin of Nevada: implications for risk assessment.

    PubMed Central

    Gustin, M S; Taylor, G E; Leonard, T L

    1994-01-01

    Approximately 5.5 x 109 g (4.0 x 105) of mercury was discharged into the Carson River Drainage Basin of west-central Nevada during processing of the gold- and silver-rich Comstock ore in the late 1800s. For the past 13 decades, mercury has been redistributed throughout 500 km2 of the basin, and concentrations are some of the highest reported values in North America. This article documents the concentrations of mercury in the air, water, and substrate at both contaminated and noncontaminated sites within the basin and discusses the implications for risk assessment. At contaminated areas, the range of mercury concentrations are as follows: mill tailings, 3-1610 micrograms/g; unfiltered reservoir water, 53-591 ng/l; atmospheric vapor, 2-294 ng/m3. These values are three to five orders of magnitude greater than natural background. In all media at contaminated sites, concentrations are spatially variable, and air and water mercury concentrations vary temporally. The study are in situated in a natural mercuriferous belt, and regional background mercury concentrations in all environmental media are higher than values typically cited for natural background. As a mercury-contaminated site in North America, the Carson River Drainage Basin is unusual for a number of reasons, including its location in a natural mercuriferous belt, high and sustained levels of anthropogenic mercury inputs, long exposure time, aridity of the climate, and the riparian setting in an arid landscape, where biological activity is concentrated in the same areas that contain high levels of mercury in multiple media. Images Figure 1. Figure 2. Figure 3. Figure 4. Figure 4. Figure 4. PMID:9657709

  10. Low levels of cobalamin, epidermal growth factor, and normal prions in multiple sclerosis spinal cord.

    PubMed

    Scalabrino, G; Veber, D; De Giuseppe, R; Roncaroli, F

    2015-07-01

    We have previously demonstrated that multiple sclerosis (MS) patients have abnormal cerebrospinal fluid (CSF) levels of the key myelin-related molecules cobalamin (Cbl), epidermal growth factor (EGF), and normal cellular prions (PrP(C)s), thus confirming that some CSF abnormalities may be co-responsible for remyelination failure. We determined the levels of these three molecules in post-mortem spinal cord (SC) samples taken from MS patients and control patients. The control SC samples, almost all of which came from non-neurological patients, did not show any microscopic lesions of any type. All of the samples were supplied by the U.K. MS Tissue Bank. The Cbl, EGF, and PrP(C) levels were determined using enzyme-linked immunosorbent assays. The SC total homocysteine level was determined using a competitive immunoenzymatic assay. CSF samples, taken from a further group of MS patients, were used for the assay of holo-transcobalamin (holo-TC) levels. The Cbl, EGF, and PrP(C) levels were significantly decreased in MS SCs in comparison with controls and, paradoxically, the decreased Cbl levels were associated with decreased SC levels of homocysteine, a biochemical marker of Cbl deficiency. The trends of EGF and PrP(C) levels paralleled those previously found in CSF, whereas that of Cbl was the opposite. There was no significant difference in CSF holo-TC levels between the MS patients and the controls. Given that we have previously demonstrated that Cbl positively regulates central nervous system EGF levels, it is conceivable that the low EGF levels in the MS SC may be causally related to a local decrease in Cbl levels. Only PrP(C) levels were invariably decreased in both the SC and CSF regardless of the clinical course of the disease. These findings suggest that the simultaneous lack of Cbl, EGF, and PrP(C)s may greatly hamper the remyelination process in MS patients, because they are key molecules of the machinery for remyelination. PMID:25888933

  11. Spatio-Temporal Factors Associated with Meningococcal Meningitis Annual Incidence at the Health Centre Level in Niger, 2004–2010

    PubMed Central

    Paireau, Juliette; Collard, Jean-Marc; Idi, Issa; Moulia-Pelat, Jean-Paul; Mueller, Judith E.; Fontanet, Arnaud

    2014-01-01

    Background Epidemics of meningococcal meningitis (MM) recurrently strike the African Meningitis Belt. This study aimed at investigating factors, still poorly understood, that influence annual incidence of MM serogroup A, the main etiologic agent over 2004–2010, at a fine spatial scale in Niger. Methodology/Principal Findings To take into account data dependencies over space and time and control for unobserved confounding factors, we developed an explanatory Bayesian hierarchical model over 2004–2010 at the health centre catchment area (HCCA) level. The multivariate model revealed that both climatic and non-climatic factors were important for explaining spatio-temporal variations in incidence: mean relative humidity during November–June over the study region (posterior mean Incidence Rate Ratio (IRR) = 0.656, 95% Credible Interval (CI) 0.405–0.949) and occurrence of early rains in March in a HCCA (IRR = 0.353, 95% CI 0.239–0.502) were protective factors; a higher risk was associated with the percentage of neighbouring HCCAs having at least one MM A case during the same year (IRR = 2.365, 95% CI 2.078–2.695), the presence of a road crossing the HCCA (IRR = 1.743, 95% CI 1.173–2.474) and the occurrence of cases before 31 December in a HCCA (IRR = 6.801, 95% CI 4.004–10.910). At the study region level, higher annual incidence correlated with greater geographic spread and, to a lesser extent, with higher intensity of localized outbreaks. Conclusions Based on these findings, we hypothesize that spatio-temporal variability of MM A incidence between years and HCCAs result from variations in the intensity or duration of the dry season climatic effects on disease risk, and is further impacted by factors of spatial contacts, representing facilitated pathogen transmission. Additional unexplained factors may contribute to the observed incidence patterns and should be further investigated. PMID:24852960

  12. Experimental and Temporal Observations on the Occurrence and Abundance of Pyrogenic PAH Relative to Atmospheric Oxygen Levels

    NASA Astrophysics Data System (ADS)

    Schuneman, P. J.; Uhle, M. E.

    2004-12-01

    seem to reflect differences in atmospheric oxygen levels. These temporal trends are compared to experimentally-derived pyrogenic PAH produced in a combustion apparatus with different levels of oxygen.

  13. Ultra-multiple and reproducible resistance levels based on intrinsic crystallization properties of Ge1Sb4Te7 film

    NASA Astrophysics Data System (ADS)

    Yin, You; Iwashita, Shota; Hosaka, Sumio; Wang, Tao; Li, Jingze; Liu, Yang; Yu, Qi

    2016-04-01

    Ge1Sb4Te7 (GST147) was adopted as the storage media for multiple resistance levels. It was exhibited that the resistivity of GST147 gradually dropped by about 3-4 orders of magnitude due to crystallization with the annealing temperature, which is critical to realize multiple resistance levels. The ultra-multiple 27 resistance levels in TiSi3/GST147 lateral phase-change memory device were demonstrated simply by controlling the maximum sweeping currents for programming the device resistance. Furthermore, the reproducibility of the six resistance levels was demonstrated and these levels were distinguishable from each other. This study indicates that GST147 is a media suitable for stable ultra-multiple level storage, enabling low-cost ultrahigh-density nonvolatile memory.

  14. Temporal and multiple quantitative trait loci analyses of resistance to bacterial wilt in tomato permit the resolution of linked loci.

    PubMed

    Mangin, B; Thoquet, P; Olivier, J; Grimsley, N H

    1999-03-01

    Ralstonia solanacearum is a soil-borne bacterium that causes the serious disease known as bacterial wilt in many plant species. In tomato, several QTL controlling resistance have been found, but in different studies, markers spanning a large region of chromosome 6 showed strong association with the resistance. By using two different approaches to analyze the data from a field test F3 population, we show that at least two separate loci approximately 30 cM apart on this chromosome are most likely involved in the resistance. First, a temporal analysis of the progression of symptoms reveals a distal locus early in the development of the disease. As the disease progresses, the maximum LOD peak observed shifts toward the proximal end of the chromosome, obscuring the distal locus. Second, although classical interval mapping could only detect the presence of one locus, a statistical "two-QTL model" test, specifically adapted for the resolution of linked QTL, strongly supported the hypothesis for the presence of two loci. These results are discussed in the context of current molecular knowledge about disease resistance genes on chromosome 6 and observations made by tomato breeders during the production of bacterial wilt-resistant varieties. PMID:10049932

  15. Temporal and multiple quantitative trait loci analyses of resistance to bacterial wilt in tomato permit the resolution of linked loci.

    PubMed Central

    Mangin, B; Thoquet, P; Olivier, J; Grimsley, N H

    1999-01-01

    Ralstonia solanacearum is a soil-borne bacterium that causes the serious disease known as bacterial wilt in many plant species. In tomato, several QTL controlling resistance have been found, but in different studies, markers spanning a large region of chromosome 6 showed strong association with the resistance. By using two different approaches to analyze the data from a field test F3 population, we show that at least two separate loci approximately 30 cM apart on this chromosome are most likely involved in the resistance. First, a temporal analysis of the progression of symptoms reveals a distal locus early in the development of the disease. As the disease progresses, the maximum LOD peak observed shifts toward the proximal end of the chromosome, obscuring the distal locus. Second, although classical interval mapping could only detect the presence of one locus, a statistical "two-QTL model" test, specifically adapted for the resolution of linked QTL, strongly supported the hypothesis for the presence of two loci. These results are discussed in the context of current molecular knowledge about disease resistance genes on chromosome 6 and observations made by tomato breeders during the production of bacterial wilt-resistant varieties. PMID:10049932

  16. Temporal uncertainty analysis of human errors based on interrelationships among multiple factors: a case of Minuteman III missile accident.

    PubMed

    Rong, Hao; Tian, Jin; Zhao, Tingdi

    2016-01-01

    In traditional approaches of human reliability assessment (HRA), the definition of the error producing conditions (EPCs) and the supporting guidance are such that some of the conditions (especially organizational or managerial conditions) can hardly be included, and thus the analysis is burdened with incomprehensiveness without reflecting the temporal trend of human reliability. A method based on system dynamics (SD), which highlights interrelationships among technical and organizational aspects that may contribute to human errors, is presented to facilitate quantitatively estimating the human error probability (HEP) and its related variables changing over time in a long period. Taking the Minuteman III missile accident in 2008 as a case, the proposed HRA method is applied to assess HEP during missile operations over 50 years by analyzing the interactions among the variables involved in human-related risks; also the critical factors are determined in terms of impact that the variables have on risks in different time periods. It is indicated that both technical and organizational aspects should be focused on to minimize human errors in a long run. PMID:26360211

  17. Integrating hydrologic and geophysical data to constrain coastal surficial aquifer processes at multiple spatial and temporal scales

    USGS Publications Warehouse

    Schultz, Gregory M.; Ruppel, Carolyn; Fulton, Patrick

    2007-01-01

    Since 1997, repeated, coincident geophysical surveys and extensive hydrologic studies in shallow monitoring wells have been used to study static and dynamic processes associated with surface water-groundwater interaction at a range of spatial scales at the estuarine and ocean boundaries of an undeveloped, permeable barrier island in the Georgia part of the U.S. South Atlantic Bight. Because geophysical and hydrologic data measure different parameters, at different resolution and precision, and over vastly different spatial scales, reconciling the coincident data or even combining complementary inversion, hydrogeochemcial analyses and well-based groundwater monitoring, and, in some cases, limited vegetation mapping to demonstrate the utility of an integrative, multidisciplinary approach for elucidating groundwater processes at spatial scales (tens to thousands of meters) that are often difficult to capture with traditional hydrologic approaches. The case studies highlight regional aquifer characteristics, varying degrees of lateral saltwater intrusion at estuarine boundaries, complex subsurface salinity gradients at the ocean boundary, and imaging of submarsh groundwater discharge and possible free convection in the pore waters of a clastic marsh. This study also documents the use of geophysical techniques for detecting temporal changes in groundwater salinity regimes under natural (not forced) gradients at intratidal to interannual (1998-200 Southeastern U.S.A. drought) time scales.

  18. 25-hydroxyvitamin D levels are associated with multiple sclerosis in Iran: A cross-sectional study.

    PubMed

    Karampoor, Sajad; Zahednasab, Hamid; Ramagopalan, Sreeram; Mehrpour, Masoud; Safarnejad Tameshkel, Fahimeh; Keyvani, Hossein

    2016-01-15

    Vitamin D is being increasingly studied in multiple sclerosis (MS). A number of studies have shown that MS patients have lower levels of 25-hydroxyvitamin D as compared to comparator populations, but previous studies in Iran have been conflicting, perhaps due to their small sample size. We performed the largest study to date investigating 25-hydroxyvitamin D levels in Iranian MS patients (n=700) and controls (n=1000). 25-hydroxyvitamin D was measured using a quantitative chemiluminescent immunometric assay. 25-hydroxyvitamin D levels were lower in patients with MS. Over 24% of controls were vitamin D sufficient as compared to 3.4% of patients. Logistic regression showed that for every 1 ng/mL increase in 25-hydroxyvitamin D, the odds for MS decreased (odds ratio=0.87; 95% confidence interval (CI) 0.85-0.88; p<0.001), after adjusting for age and sex. There was no association between 25-hydroxyvitamin D levels and disability scores in MS patients. Iranian Patients with MS have low levels of vitamin D and, where deemed necessary, appropriate supplementation should be given. PMID:26711568

  19. Serum matrix metalloproteinase‐3 levels correlate with disease activity in relapsing‐remitting multiple sclerosis

    PubMed Central

    Kanesaka, T; Mori, M; Hattori, T; Oki, T; Kuwabara, S

    2006-01-01

    Background Adhesion molecules and matrix metalloproteinases (MMPs) are known to be relevant to the ongoing development and disappearance of areas of demyelination in the white matter of the CNS of multiple sclerosis (MS) patients. This study examined whether serum matrix metalloproteinase‐3 (MMP‐3) levels correlate with disease activity in MS. Methods Serum MMP‐3 levels in 47 consecutive patients with relapsing‐remitting MS were measured by immunoassay every 4 weeks over a 15 month period. Results During the study period, 48 clinical relapses occurred. Serum MMP‐3 levels within 1 month of relapse were significantly higher than during the remission phase. Sequential analysis showed that serum MMP‐3 levels had increased transiently at the time of clinical relapse but returned to the normal range within a month. Conclusions Circulatory MMP‐3 levels are correlated with disease activity in relapsing‐remitting MS. This may contribute to the breakdown of the blood‐brain barrier at the time of relapse. PMID:16421119

  20. Integrating gender on multiple levels: a conceptual model for teaching gender issues in family therapy.

    PubMed

    Williams, Lee; McBain, Heidi

    2006-07-01

    As the field of family therapy has evolved, there has been growing recognition as to the importance of gender in family therapy. To prepare the next generation of family therapists adequately, it is important that they recognize the many and complex ways in which gender permeates their work. In this article we present an integrative model to help educators teach family therapists about gender issues. The model examines how gender influences clinical work on multiple levels, including contextual levels such as society and the marriage and family therapy field. The model also acknowledges how gender can influence individuals, including clients, therapists, and supervisors. Finally, the model attempts to capture the complexity of how gender can impact the relational dynamics between two or more individuals. PMID:16933441

  1. Decision-level fusion approach to face recognition with multiple cameras

    NASA Astrophysics Data System (ADS)

    Yeom, Seokwon

    2014-05-01

    Face classification of multiple cameras has wide applications in surveillance. In this paper, the efficacy of a multi-frame decision-level fusion scheme for face classification based on the photon-counting linear discriminant analysis is investigated. The photon-counting linear discriminant analysis method is able to realize Fisher's criterion without preprocessing for dimensionality reduction. The decision-level fusion scheme is comprised of three stages: score normalization, score validation, and score combination. After normalization, the candidate scores are selected and combined by means of a score validation process and a fusion rule, respectively, in order to generate a final score. In the experiments, out-of-focus and motion blurs are rendered on test images simulating harsh conditions.

  2. Dynamics of quantum Fisher information in a two-level system coupled to multiple bosonic reservoirs

    NASA Astrophysics Data System (ADS)

    Wang, Guo-You; Guo, You-Neng; Zeng, Ke

    2015-11-01

    We consider the optimal parameter estimation for a two-level system coupled to multiple bosonic reservoirs. By using quantum Fisher information (QFI), we investigate the effect of the Markovian reservoirs’ number N on QFI in both weak and strong coupling regimes for a two-level system surrounded by N zero-temperature reservoirs of field modes initially in the vacua. The results show that the dynamics of QFI non-monotonically decays to zero with revival oscillations at some time in the weak coupling regime depending on the reservoirs’ parameters. Furthermore, we also present the relations between the QFI flow, the flows of energy and information, and the sign of the decay rate to gain insight into the physical processes characterizing the dynamics. Project supported by the Hunan Provincial Innovation Foundation for Postgraduate, China (Grant No. CX2014B194) and the Scientific Research Foundation of Hunan Provincial Education Department, China (Grant No. 13C039).

  3. Multiple cell and population-level interactions with mouse embryonic stem cell heterogeneity.

    PubMed

    Cannon, Danielle; Corrigan, Adam M; Miermont, Agnes; McDonel, Patrick; Chubb, Jonathan R

    2015-08-15

    Much of development and disease concerns the generation of gene expression differences between related cells sharing similar niches. However, most analyses of gene expression only assess population and time-averaged levels of steady-state transcription. The mechanisms driving differentiation are buried within snapshots of the average cell, lacking dynamic information and the diverse regulatory history experienced by individual cells. Here, we use a quantitative imaging platform with large time series data sets to determine the regulation of developmental gene expression by cell cycle, lineage, motility and environment. We apply this technology to the regulation of the pluripotency gene Nanog in mouse embryonic stem cells. Our data reveal the diversity of cell and population-level interactions with Nanog dynamics and heterogeneity, and how this regulation responds to triggers of pluripotency. Cell cycles are highly heterogeneous and cycle time increases with Nanog reporter expression, with longer, more variable cycle times as cells approach ground-state pluripotency. Nanog reporter expression is highly stable over multiple cell generations, with fluctuations within cycles confined by an attractor state. Modelling reveals an environmental component to expression stability, in addition to any cell-autonomous behaviour, and we identify interactions of cell density with both cycle behaviour and Nanog. Rex1 expression dynamics showed shared and distinct regulatory effects. Overall, our observations of multiple partially overlapping dynamic heterogeneities imply complex cell and environmental regulation of pluripotent cell behaviour, and suggest simple deterministic views of stem cell states are inappropriate. PMID:26209649

  4. Multiple cell and population-level interactions with mouse embryonic stem cell heterogeneity

    PubMed Central

    Cannon, Danielle; Corrigan, Adam M.; Miermont, Agnes; McDonel, Patrick; Chubb, Jonathan R.

    2015-01-01

    Much of development and disease concerns the generation of gene expression differences between related cells sharing similar niches. However, most analyses of gene expression only assess population and time-averaged levels of steady-state transcription. The mechanisms driving differentiation are buried within snapshots of the average cell, lacking dynamic information and the diverse regulatory history experienced by individual cells. Here, we use a quantitative imaging platform with large time series data sets to determine the regulation of developmental gene expression by cell cycle, lineage, motility and environment. We apply this technology to the regulation of the pluripotency gene Nanog in mouse embryonic stem cells. Our data reveal the diversity of cell and population-level interactions with Nanog dynamics and heterogeneity, and how this regulation responds to triggers of pluripotency. Cell cycles are highly heterogeneous and cycle time increases with Nanog reporter expression, with longer, more variable cycle times as cells approach ground-state pluripotency. Nanog reporter expression is highly stable over multiple cell generations, with fluctuations within cycles confined by an attractor state. Modelling reveals an environmental component to expression stability, in addition to any cell-autonomous behaviour, and we identify interactions of cell density with both cycle behaviour and Nanog. Rex1 expression dynamics showed shared and distinct regulatory effects. Overall, our observations of multiple partially overlapping dynamic heterogeneities imply complex cell and environmental regulation of pluripotent cell behaviour, and suggest simple deterministic views of stem cell states are inappropriate. PMID:26209649

  5. An image-set for identifying multiple regions/levels of interest in digital images

    NASA Astrophysics Data System (ADS)

    Jaber, Mustafa; Bailly, Mark; Wang, Yuqiong; Saber, Eli

    2011-09-01

    In the field of identifying regions-of-interest (ROI) in digital images, several image-sets are referenced in the literature; the open-source ones typically present a single main object (usually located at or near the image center as a pop-out). In this paper, we present a comprehensive image-set (with its ground-truth) which will be made publically available. The database consists of images that demonstrate multiple-regions-of-interest (MROI) or multiple-levels-of-interest (MLOI). The former terminology signifies that the scene has a group of subjects/objects (not necessarily spatially-connected regions) that share the same level of perceptual priority to the human observer while the latter indicates that the scene is complex enough to have primary, secondary, and background objects. The methodology for developing the proposed image-set is described. A psychophysical experiment to identify MROI and MLOI was conducted, the results of which are also presented. The image-set has been developed to be used in training and evaluation of ROI detection algorithms. Applications include image compression, thumbnailing, summarization, and mobile phone imagery. fluor

  6. Brain mitochondrial metabolic dysfunction and glutamate level reduction in the pilocarpine model of temporal lobe epilepsy in mice

    PubMed Central

    Smeland, Olav B; Hadera, Mussie G; McDonald, Tanya S; Sonnewald, Ursula; Borges, Karin

    2013-01-01

    Although certain metabolic characteristics such as interictal glucose hypometabolism are well established for temporal lobe epilepsy (TLE), its pathogenesis still remains unclear. Here, we performed a comprehensive study of brain metabolism in a mouse model of TLE, induced by pilocarpine–status epilepticus (SE). To investigate glucose metabolism, we injected mice 3.5–4 weeks after SE with [1,2-13C]glucose before microwave fixation of the head. Using 1H and 13C nuclear magnetic resonance spectroscopy, gas chromatography—mass spectrometry and high-pressure liquid chromatography, we quantified metabolites and 13C labeling in extracts of cortex and hippocampal formation (HF). Hippocampal levels of glutamate, glutathione and alanine were decreased in pilocarpine–SE mice compared with controls. Moreover, the contents of N-acetyl aspartate, succinate and reduced nicotinamide adenine dinucleotide (phosphate) NAD(P)H were decreased in HF indicating impairment of mitochondrial function. In addition, the reduction in 13C enrichment of hippocampal citrate and malate suggests decreased tricarboxylic acid (TCA) cycle turnover in this region. In cortex, we found reduced 13C labeling of glutamate, glutamine and aspartate via the pyruvate carboxylation and pyruvate dehydrogenation pathways, suggesting slower turnover of these amino acids and/or the TCA cycle. In conclusion, mitochondrial metabolic dysfunction and altered amino-acid metabolism is found in both cortex and HF in this epilepsy model. PMID:23611869

  7. In pursuit of an accurate spatial and temporal model of biomolecules at the atomistic level: a perspective on computer simulation

    SciTech Connect

    Gray, Alan; Harlen, Oliver G.; Harris, Sarah A.; Khalid, Syma; Leung, Yuk Ming; Lonsdale, Richard; Mulholland, Adrian J.; Pearson, Arwen R.; Read, Daniel J.; Richardson, Robin A.

    2015-01-01

    The current computational techniques available for biomolecular simulation are described, and the successes and limitations of each with reference to the experimental biophysical methods that they complement are presented. Despite huge advances in the computational techniques available for simulating biomolecules at the quantum-mechanical, atomistic and coarse-grained levels, there is still a widespread perception amongst the experimental community that these calculations are highly specialist and are not generally applicable by researchers outside the theoretical community. In this article, the successes and limitations of biomolecular simulation and the further developments that are likely in the near future are discussed. A brief overview is also provided of the experimental biophysical methods that are commonly used to probe biomolecular structure and dynamics, and the accuracy of the information that can be obtained from each is compared with that from modelling. It is concluded that progress towards an accurate spatial and temporal model of biomacromolecules requires a combination of all of these biophysical techniques, both experimental and computational.

  8. Trait-level temporal lobe hypoactivation to social exclusion in unaffected siblings of children and adolescents with autism spectrum disorders

    PubMed Central

    Bolling, Danielle Z.; Pelphrey, Kevin A.; Vander Wyk, Brent C.

    2015-01-01

    Social exclusion elicits powerful feelings of negative affect associated with rejection. Additionally, experiencing social exclusion reliably recruits neural circuitry associated with emotion processing. Recent work has demonstrated abnormal neural responses to social exclusion in children and adolescents with autism spectrum disorders (ASD). However, it remains unknown to what extent these abnormalities are due to atypical social experiences versus genetic predispositions to atypical neural processing. To address this question, the current study investigated brain responses to social exclusion compared to a baseline condition of fair play in unaffected siblings of youth with ASD using functional magnetic resonance imaging. We identified common deviations between unaffected siblings and ASD probands that might represent trait-level abnormalities in processing social exclusion versus fair play, specifically in the right anterior temporoparietal junction extending into posterior superior temporal sulcus. Thus, hypoactivation to social exclusion versus fair play in this region may represent a shared genetic vulnerability to developing autism. In addition, we present evidence supporting the idea that one’s status as an unaffected sibling moderates the relationship between IQ and neural activation to social exclusion versus fair play in anterior cingulate cortex. These results are discussed in the context of previous literature on neural endophenotypes of autism. PMID:26011751

  9. Levels, Temporal-Spatial Variations, and Sources of Organochlorine Pesticides in Ambient Air of Lake Chaohu, China

    PubMed Central

    Ouyang, Hui-Ling; He, Wei; Qin, Ning; Kong, Xiang-Zhen; Liu, Wen-Xiu; He, Qi-Shuang; Wang, Qing-Mei; Jiang, Yu-Jiao; Yang, Chen; Yang, Bin; Xu, Fu-Liu

    2012-01-01

    The residual levels of OCPs in the gas phase and particle phase in Lake Chaohu, China, were measured using GC-MS from March 2010 to February 2011. The temporal-spatial variations and sources of OCPs were also analyzed. Twenty types of OCPs were detected in the gas phase with a total concentration of 484.8 ± 550.4 pg/m3. Endosulfan, DDTs and chlordane were the primary OCPs in the gas phase. The mean concentration of OCPs in the gas phase was significantly higher in the summer than in the winter. Seventeen types of OCPs were detected in the particle phase with a total concentration of 18.3 ± 26.1 pg/m3. DDTs were major OCPs in the particle phase. The mean concentration of OCPs in the particle phase decreased at first and then increased during the period. The potential source of the HCHs in ambient air of Lake Chaohu might come from recent lindane usage. DDTs mainly came from historical dicofol usage, and an input of DDT was observed in the spring, which may result from the present use of marine paint that contains technical DDT. Endosulfan and chlordane in the air may be due to the present use of technical endosulfan and chlordane. PMID:23251102

  10. Temporally and spatially resolved photoluminescence investigation of (112{sup ¯}2) semi-polar InGaN/GaN multiple quantum wells grown on nanorod templates

    SciTech Connect

    Liu, B.; Smith, R.; Athanasiou, M.; Yu, X.; Bai, J.; Wang, T.

    2014-12-29

    By means of time-resolved photoluminescence (PL) and confocal PL measurements, temporally and spatially resolved optical properties have been investigated on a number of In{sub x}Ga{sub 1−x}N/GaN multiple-quantum-well (MQW) structures with a wide range of indium content alloys from 13% to 35% on (112{sup ¯}2) semi-polar GaN with high crystal quality, obtained through overgrowth on nanorod templates. With increasing indium content, the radiative recombination lifetime initially increases as expected, but decreases if the indium content further increases to 35%, corresponding to emission in the green spectral region. The reduced radiative recombination lifetime leads to enhanced optical performance for the high indium content MQWs as a result of strong exciton localization, which is different from the behaviour of c-plane InGaN/GaN MQWs, where quantum confined Stark effect plays a dominating role in emission process.

  11. Investigating tree mortality at multiple spatial and temporal scales in the Bishop pine forest on Santa Cruz Island, California

    NASA Astrophysics Data System (ADS)

    Baguskas, S. A.; Bookhagen, B.; Peterson, S. H.; Asner, G. P.

    2010-12-01

    The rate of tree mortality has increased across the western United States in recent decades, and many studies attribute the cause to water stress induced by regional warming. To date, the geographical scope of study regions affected by widespread tree mortality in the American West has largely been limited to continental, montane climates. Much less is known about mortality events in other climatic regions, such as coastal forests. The relatively unvarying nature of the coastal, maritime climate has traditionally been assumed to buffer these forests from large climate variations; however, we have observed rapid tree mortality in this region which suggests coastal forests may be as susceptible to drought-induced mortality as inland forest locations. Santa Cruz Island (SCI), one of the California Channel Islands, harbors numerous relict and endemic plant species, including Bishop pine (Pinus muricata). Following extreme drought in southern California in two of the last three years (2007-2009), widespread mortality of Bishop pines has become evident. Bishop pine populations are restricted to the fog belt of coastal California and northern Baja California; therefore, a major reduction of existing populations on SCI would greatly reduce the distribution of the species as a whole. The focus of my research is to investigate the mechanisms underlying spatial and temporal patterns of Bishop pine mortality on SCI. I used remote sensing techniques to characterize spatiotemporal patterns of tree mortality and I have performed ground-data collection to validate remote-sensing results. Remote sensing in combination with field verification is a valuable tool to understand the spatiotemporal pattern of tree mortality and is a necessary step to help elucidate potential environmental and biological controls on tree mortality.

  12. Possible Evidence of Multiple Sea Level Oscillations in the Seychelles During the Last Interglacial

    NASA Astrophysics Data System (ADS)

    Dutton, A. L.; Vyverberg, K.; Webster, J.; Dechnik, B.; Zwartz, D.; Lambeck, K.

    2013-12-01

    observations ostensibly support the notion that the last interglacial period was characterized by ice sheet instability, causing multiple sea level oscillations.

  13. Rapid multiple-level coevolution in experimental populations of yeast killer and nonkiller strains.

    PubMed

    Pieczynska, Magdalena D; Wloch-Salamon, Dominika; Korona, Ryszard; de Visser, J Arjan G M

    2016-06-01

    Coevolution between different biological entities is considered an important evolutionary mechanism at all levels of biological organization. Here, we provide evidence for coevolution of a yeast killer strain (K) carrying cytoplasmic dsRNA viruses coding for anti-competitor toxins and an isogenic toxin-sensitive strain (S) during 500 generations of laboratory propagation. Signatures of coevolution developed at two levels. One of them was coadaptation of K and S. Killing ability of K first increased quickly and was followed by the rapid invasion of toxin-resistant mutants derived from S, after which killing ability declined. High killing ability was shown to be advantageous when sensitive cells were present but costly when they were absent. Toxin resistance evolved via a two-step process, presumably involving the fitness-enhancing loss of one chromosome followed by selection of a recessive resistant mutation on the haploid chromosome. The other level of coevolution occurred between cell and killer virus. By swapping the killer viruses between ancestral and evolved strains, we could demonstrate that changes observed in both host and virus were beneficial only when combined, suggesting that they involved reciprocal changes. Together, our results show that the yeast killer system shows a remarkable potential for rapid multiple-level coevolution. PMID:27168531

  14. Serum Gelatinases Levels in Multiple Sclerosis Patients during 21 Months of Natalizumab Therapy

    PubMed Central

    Bellini, Tiziana; Trentini, Alessandro; Delbue, Serena; Elia, Francesca; Gastaldi, Matteo; Franciotta, Diego; Bergamaschi, Roberto; Manfrinato, Maria Cristina; Volta, Carlo Alberto; Granieri, Enrico; Fainardi, Enrico

    2016-01-01

    Background. Natalizumab is a highly effective treatment approved for multiple sclerosis (MS). The opening of the blood-brain barrier mediated by matrix metalloproteinases (MMPs) is considered a crucial step in MS pathogenesis. Our goal was to verify the utility of serum levels of active MMP-2 and MMP-9 as biomarkers in twenty MS patients treated with Natalizumab. Methods. Serum levels of active MMP-2 and MMP-9 and of specific tissue inhibitors TIMP-1 and TIMP-2 were determined before treatment and for 21 months of therapy. Results. Serum levels of active MMP-2 and MMP-9 and of TIMP-1 and TIMP-2 did not differ during the treatment. The ratio between MMP-9 and MMP-2 was increased at the 15th month compared with the 3rd, 6th, and 9th months, greater at the 18th month than at the 3rd and 6th months, and higher at the 21st than at the 3rd and 6th months. Discussion. Our data indicate that an imbalance between active MMP-9 and active MMP-2 can occur in MS patients after 15 months of Natalizumab therapy; however, they do not support the use of serum active MMP-2 and active MMP-9 and TIMP-1 and TIMP-2 levels as biomarkers for monitoring therapeutic response to Natalizumab. PMID:27340316

  15. Understanding multiple levels of norms about teen pregnancy and their relationships to teens’ sexual behaviors

    PubMed Central

    Mollborn, Stefanie; Domingue, Benjamin W.; Boardman, Jason D.

    2014-01-01

    Researchers seeking to understand teen sexual behaviors often turn to age norms, but they are difficult to measure quantitatively. Previous work has usually inferred norms from behavioral patterns or measured group-level norms at the individual level, ignoring multiple reference groups. Capitalizing on the multilevel design of the Add Health survey, we measure teen pregnancy norms perceived by teenagers, as well as average norms at the school and peer network levels. School norms predict boys’ perceived norms, while peer network norms predict girls’ perceived norms. Peer network and individually perceived norms against teen pregnancy independently and negatively predict teens’ likelihood of sexual intercourse. Perceived norms against pregnancy predict increased likelihood of contraception among sexually experienced girls, but sexually experienced boys’ contraceptive behavior is more complicated: When both the boy and his peers or school have stronger norms against teen pregnancy he is more likely to contracept, and in the absence of school or peer norms against pregnancy, boys who are embarrassed are less likely to contracept. We conclude that: (1) patterns of behavior cannot adequately operationalize teen pregnancy norms, (2) norms are not simply linked to behaviors through individual perceptions, and (3) norms at different levels can operate independently of each other, interactively, or in opposition. This evidence creates space for conceptualizations of agency, conflict, and change that can lead to progress in understanding age norms and sexual behaviors. PMID:25104920

  16. Understanding multiple levels of norms about teen pregnancy and their relationships to teens' sexual behaviors.

    PubMed

    Mollborn, Stefanie; Domingue, Benjamin W; Boardman, Jason D

    2014-06-01

    Researchers seeking to understand teen sexual behaviors often turn to age norms, but they are difficult to measure quantitatively. Previous work has usually inferred norms from behavioral patterns or measured group-level norms at the individual level, ignoring multiple reference groups. Capitalizing on the multilevel design of the Add Health survey, we measure teen pregnancy norms perceived by teenagers, as well as average norms at the school and peer network levels. School norms predict boys' perceived norms, while peer network norms predict girls' perceived norms. Peer network and individually perceived norms against teen pregnancy independently and negatively predict teens' likelihood of sexual intercourse. Perceived norms against pregnancy predict increased likelihood of contraception among sexually experienced girls, but sexually experienced boys' contraceptive behavior is more complicated: When both the boy and his peers or school have stronger norms against teen pregnancy he is more likely to contracept, and in the absence of school or peer norms against pregnancy, boys who are embarrassed are less likely to contracept. We conclude that: (1) patterns of behavior cannot adequately operationalize teen pregnancy norms, (2) norms are not simply linked to behaviors through individual perceptions, and (3) norms at different levels can operate independently of each other, interactively, or in opposition. This evidence creates space for conceptualizations of agency, conflict, and change that can lead to progress in understanding age norms and sexual behaviors. PMID:25104920

  17. Changes in Serum Ceruloplasmin Levels Based on Immunomodulatory Treatments and Melatonin Supplementation in Multiple Sclerosis Patients

    PubMed Central

    Adamczyk-Sowa, Monika; Sowa, Paweł; Mucha, Sebastian; Zostawa, Jacek; Mazur, Bogdan; Owczarek, Maciej; Pierzchała, Krystyna

    2016-01-01

    Background The cause of multiple sclerosis (MS) is currently unknown, but it is thought that oxidative damage and iron metabolism mechanisms are involved. The aim of this study was to examine ceruloplasmin concentration in MS patients based on various immunomodifying therapies and to test the effect of antioxidative melatonin on ceruloplasmin levels. Material/Methods This prospective study included 102 MS patients and 15 healthy controls. Patients were divided into groups according to different immunomodifying therapies: interferons beta 1a, interferons beta 1b, glatiramer acetate, mitoxantrone, and immunomodifying pre-treatment (A, B, G, Mx, and P groups, respectively), and the relapse R group. MS patients were supplemented with melatonin for 3 months. Serum ceruloplasmin concentrations, EDSS, brain MRI, serum C-reactive protein level, and white blood cell count were examined. Results The results indicated significantly increased levels of ceruloplasmin in MS patients. No differences in ceruloplasmin concentrations between the relapse group and controls were observed. In A and G groups, ceruloplasmin levels before and after melatonin were similar to levels in controls. In group B, ceruloplasmin concentration was significantly higher vs. control and relapse groups. After melatonin administration in group B, ceruloplasmin levels decreased. Ceruloplasmin concentrations in the Mx group were significantly higher compared to controls. Conclusions We found for the first time that ceruloplasmin concentration in MS patients varies depending on different immunomodulatory treatment and decrease after 3 months of melatonin administration. Ceruloplasmin could be a valuable serum marker for the chronic demyelinating process participating in oxidative stress mechanisms, as well as a neurodegenerative marker, but not a marker of acute-phase MS. PMID:27420299

  18. Changes in Serum Ceruloplasmin Levels Based on Immunomodulatory Treatments and Melatonin Supplementation in Multiple Sclerosis Patients.

    PubMed

    Adamczyk-Sowa, Monika; Sowa, Paweł; Mucha, Sebastian; Zostawa, Jacek; Mazur, Bogdan; Owczarek, Maciej; Pierzchała, Krystyna

    2016-01-01

    BACKGROUND The cause of multiple sclerosis (MS) is currently unknown, but it is thought that oxidative damage and iron metabolism mechanisms are involved. The aim of this study was to examine ceruloplasmin concentration in MS patients based on various immunomodifying therapies and to test the effect of antioxidative melatonin on ceruloplasmin levels. MATERIAL AND METHODS This prospective study included 102 MS patients and 15 healthy controls. Patients were divided into groups according to different immunomodifying therapies: interferons beta 1a, interferons beta 1b, glatiramer acetate, mitoxantrone, and immunomodifying pre-treatment (A, B, G, Mx, and P groups, respectively), and the relapse R group. MS patients were supplemented with melatonin for 3 months. Serum ceruloplasmin concentrations, EDSS, brain MRI, serum C-reactive protein level, and white blood cell count were examined. RESULTS The results indicated significantly increased levels of ceruloplasmin in MS patients. No differences in ceruloplasmin concentrations between the relapse group and controls were observed. In A and G groups, ceruloplasmin levels before and after melatonin were similar to levels in controls. In group B, ceruloplasmin concentration was significantly higher vs. control and relapse groups. After melatonin administration in group B, ceruloplasmin levels decreased. Ceruloplasmin concentrations in the Mx group were significantly higher compared to controls. CONCLUSIONS We found for the first time that ceruloplasmin concentration in MS patients varies depending on different immunomodulatory treatment and decrease after 3 months of melatonin administration. Ceruloplasmin could be a valuable serum marker for the chronic demyelinating process participating in oxidative stress mechanisms, as well as a neurodegenerative marker, but not a marker of acute-phase MS. PMID:27420299

  19. Nocturnal plasma melatonin and alpha-melanocyte stimulating hormone levels during exacerbation of multiple sclerosis.

    PubMed

    Sandyk, R; Awerbuch, G I

    1992-01-01

    The pineal gland has been implicated recently in the pathogenesis of multiple sclerosis (MS). To investigate this hypothesis further, we studied nocturnal plasma melatonin levels and the presence or absence of pineal calcification (PC) on CT scan in a cohort of 25 patients (5 men, 20 women; mean age: 41.1 years; SD = 11.1; range: 27-72) who were admitted to a hospital Neurology service for exacerbation of symptoms. Plasma alpha-melanocyte stimulating hormone (alpha-MSH) estimations were included in the study since there is evidence for a feedback inhibition between alpha-MSH and melatonin secretion. Abnormal melatonin levels were found in 13 patients (52.0%), 11 of whom had nocturnal levels which were below the daytime values (i.e., < 25 pg/ml). Although melatonin levels were unrelated to the patient's age and sex, there was a positive correlation with age of onset of symptoms (p < .0001) and an inverse correlation with the duration of illness (p < .05). PC was noted in 24 of 25 patients (96%) underscoring the pathogenetic relationship between MS and the pineal gland. Alpha-MSH levels were undetectable in 15 patients (60.0%), low in two patients (8.0%), normal in seven patients (28.0%), and elevated in one patient (4.0%). Collectively, abnormal alpha-MSH levels were found in over 70% of patients. These findings support the hypothesis that MS may be associated with pineal failure and suggest, furthermore, that alterations in the secretion of alpha-MSH also occur during exacerbation of symptoms. The relevance of these findings to the pathogenesis of MS are discussed. PMID:1305632

  20. Using multiple natural and injected tracers to evaluate spatial and temporal patterns of hyporheic flux and biogeochemistry

    NASA Astrophysics Data System (ADS)

    Briggs, M. A.; Lautz, L. K.; Gordon, R. P.; McKenzie, J. M.; Gonzalez Pinzon, R. A.; Hare, D. K.

    2011-12-01

    Punctuated head differentials along stream water surface profiles, in conjunction with heterogeneous sediment and complex bedforms, enhance hyporheic exchange, although the magnitude of this exchange is not uniform across the streambed. Patchy biogeochemical micro-environments develop within these complex systems, and are strongly controlled by residence time along hyporheic flowpaths. We used multiple tracer techniques, natural and injected, to evaluate the physical hyporheic flow dynamics and associated biogeochemical cycling and microbial reactivity around two beaver dams in Wyoming, USA as stream discharge dropped by 45% over five weeks. High spatial-resolution fiber-optic distributed temperature sensing (DTS) was used to collect heat data over nine vertical profiles to 0.8 m depth in varied streambed morphologies (pools, glides and bars). This data was interpreted with a one-dimensional flux model (VFLUX) to quantitatively determine how vertical hyporheic flux patterns arrange spatially and evolve over time. Coincident with these locations, vertical profiles of pore water to the 0.55 m depth were collected every week and analyzed for dissolved oxygen, pH and redox sensitive solutes. Additionally, the stream was brought to a plateau for 9 hrs with paired chloride and resazurin tracers, a technique which can be used to measure the aerobic microbial reactivity of specific flowpaths in the subsurface. During this injection, shallow profiles of pore water were collected three times at all nine locations. The combined results revealed a complicated system where vertical hyporheic flux patterns were organized by morphologic unit and dictated the redox condition of the subsurface. Generally, glides had strong, deep and consistent downward hyporheic flux (1.6 md-1), with oxic conditions persisting to depth along the profiles. Sediment bars close to the dam had shallower strong downward flux that diminished over the study period, while bars set farther back from the dam

  1. Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits.

    PubMed

    Corradin, Olivia; Saiakhova, Alina; Akhtar-Zaidi, Batool; Myeroff, Lois; Willis, Joseph; Cowper-Sal lari, Richard; Lupien, Mathieu; Markowitz, Sanford; Scacheri, Peter C

    2014-01-01

    DNA variants (SNPs) that predispose to common traits often localize within noncoding regulatory elements such as enhancers. Moreover, loci identified by genome-wide association studies (GWAS) often contain multiple SNPs in linkage disequilibrium (LD), any of which may be causal. Thus, determining the effect of these multiple variant SNPs on target transcript levels has been a major challenge. Here, we provide evidence that for six common autoimmune disorders (rheumatoid arthritis, Crohn's disease, celiac disease, multiple sclerosis, lupus, and ulcerative colitis), the GWAS association arises from multiple polymorphisms in LD that map to clusters of enhancer elements active in the same cell type. This finding suggests a "multiple enhancer variant" hypothesis for common traits, where several variants in LD impact multiple enhancers and cooperatively affect gene expression. Using a novel method to delineate enhancer-gene interactions, we show that multiple enhancer variants within a given locus typically target the same gene. Using available data from HapMap and B lymphoblasts as a model system, we provide evidence at numerous loci that multiple enhancer variants cooperatively contribute to altered expression of their gene targets. The effects on target transcript levels tend to be modest and can be either gain- or loss-of-function. Additionally, the genes associated with multiple enhancer variants encode proteins that are often functionally related and enriched in common pathways. Overall, the multiple enhancer variant hypothesis offers a new paradigm by which noncoding variants can confer susceptibility to common traits. PMID:24196873

  2. A probabilistic framework for the spatio-temporal segmentation of multiple sclerosis lesions in MR images of the brain

    NASA Astrophysics Data System (ADS)

    Greenspan, Hayit; Mayer, Arnaldo; Shahar, Allon

    2003-05-01

    In this paper we describe the application of a novel statistical image-sequence (video) modeling scheme to sequences of multiple sclerosis (MS) images taken over time. A unique key feature of the proposed framework is the analysis of the image-sequence input as a single entity as opposed to a sequence of separate frames. The extracted space-time regions allow for the detection and identification of disease events and processes, such as the appearance and progression of lesions. According to the proposed methodology, coherent space-time regions in the feature space, and corresponding coherent segments in the video content are extracted by unsupervised clustering via Gaussian mixture modeling (GMM). The parameters of the GMM are determined via the maximum likelihood principle and the Expectation-Maximization (EM) algorithm. The clustering of the image sequence yields a collection of regions (blobs) in a four-dimensional feature space (including intensity, position (x,y), and time). Regions corresponding to MS lesions are automatically identified based on criteria regarding the mean intensity and the size variability over time. The proposed methodology was applied to a registered sequence of 24 T2-weighted MR images acquired from an MS patient over a period of approximately a year. Examples of preliminary qualitative results are shown.

  3. A single model for the variety of multiple-population formation(s) in globular clusters: a temporal sequence

    NASA Astrophysics Data System (ADS)

    D'Antona, F.; Vesperini, E.; D'Ercole, A.; Ventura, P.; Milone, A. P.; Marino, A. F.; Tailo, M.

    2016-05-01

    We explain the multiple populations recently found in the `prototype' globular cluster (GC) NGC 2808 in the framework of the asymptotic giant branch (AGB) scenario. The chemistry of the five - or more - populations is approximately consistent with a sequence of star formation events, starting after the Type II supernova epoch, lasting approximately until the time when the third dredge-up affects the AGB evolution (age ˜90-120 Myr), and ending when the Type Ia supernovae begin exploding in the cluster, eventually clearing it from the gas. The formation of the different populations requires episodes of star formation in AGB gas diluted with different amounts of pristine gas. In the nitrogen-rich, helium-normal population identified in NGC 2808 by the UV Legacy Survey of GCs, the nitrogen increase is due to the third dredge-up in the smallest mass AGB ejecta involved in the star formation of this population. The possibly iron-rich small population in NGC 2808 may be a result of contamination by a single Type Ia supernova. The NGC 2808 case is used to build a general framework to understand the variety of `second-generation' stars observed in GCs. Cluster-to-cluster variations are ascribed to differences in the effects of the many processes and gas sources which may be involved in the formation of the second generation. We discuss an evolutionary scheme, based on pollution by delayed Type II supernovae, which accounts for the properties of s-Fe-anomalous clusters.

  4. Temporal variation (seasonal and interannual) of vegetation indices of maize and soybeans across multiple years in central Iowa

    NASA Astrophysics Data System (ADS)

    Prueger, J. H.; Hatfield, J. L.

    2015-09-01

    Remotely sensed reflectance parameters from corn and soybean surfaces can be correlated to crop production. Surface reflectance of a typical Upper Midwest corn /soybean region in central Iowa across multiple years reveal subtle dynamics in vegetative surface response to a continually varying climate. From 2006 through 2014 remotely sensed data have been acquired over production fields of corn and soybeans in central IA, U.S.A. with the fields alternating between corn and soybeans. The data have been acquired using ground-based radiometers with 16 wavebands covering the visible, near infrared, shortwave infrared wavebands and combined into a series of vegetative indices. These data were collected on clear days with the goal of collecting data at a minimum of once per week from prior to planting until after fall tillage operations. Within each field, five sites were established and sampled during the year to reduce spatial variation and allow for an assessment of changes in the vegetative indices throughout the growing season. Ancillary data collected for each crop included the phenological stage at each sampling date along with biomass sampled at the onset of the reproductive stage and at physiological maturity. Evaluation of the vegetative indices for the different years revealed that patterns were related to weather effects on corn and soybean growth. Remote sensing provides a method to evaluate changes within and among growing seasons to assess crop growth and development as affected by differences in weather variability.

  5. Altered α-synuclein, parkin, and synphilin isoform levels in multiple system atrophy brains.

    PubMed

    Brudek, Tomasz; Winge, Kristian; Rasmussen, Nadja Bredo; Bahl, Justyna Maria Czarna; Tanassi, Julia; Agander, Tina Klitmøller; Hyde, Thomas M; Pakkenberg, Bente

    2016-01-01

    Together with Parkinson's disease (PD) and dementia with Lewy bodies, multiple system atrophy (MSA) is a member of a diverse group of neurodegenerative disorders termed α-synucleinopathies. Previously, it has been shown that α-synuclein, parkin, and synphilin-1 display disease-specific transcription patterns in frontal cortex in PD, dementia with Lewy bodies, and MSA, and thus may mediate the development of α-synucleinopathies. In this study, the differential expression of α-synuclein isoforms on transcriptional and translational levels was ascertained in MSA patients in comparison with PD cases and normal controls using isoform-specific primers and exon-specific antibodies in substantia nigra, striatum, cerebellar cortex, and nucleus dentatus. These regions are severely affected by α-synuclein pathology and neurodegeneration. Furthermore, we have also investigated transcript levels for parkin and synphilin-1 isoforms. In MSA brains, α-synuclein140 and α-synuclein 112 isoform levels were significantly increased, whereas levels of the α-synuclein 126 isoform were decreased in the substantia nigra, striatum, cerebellar cortex, and nucleus dentatus versus controls. Moreover, in MSA cases, we showed increased levels of parkin isoforms lacking the N-terminal ubiquitin-like domain and an aggregation-prone synphilin-1A isoform that causes neuronal toxicity in MSA. In PD brains, parkin transcript variant 3, 7, and 11 were significantly and specifically over-expressed in the striatum and cerebellar cortex, together with synphilin-1A and 1C. The changes of isoform expression profiles in neurodegenerative diseases suggest alterations in the regulation of transcription and/or splicing events, leading to regional/cellular events that may be important for the highly increased aggregation of α-synuclein in the brain. We report differential expression of α-synuclein, parkin, and synphilin-1 isoforms in multiple system atrophy (MSA) versus Parkinson's disease and normal

  6. Resonance fluorescence of strongly driven two-level system coupled to multiple dissipative reservoirs

    NASA Astrophysics Data System (ADS)

    Yan, Yiying; Lü, Zhiguo; Zheng, Hang

    2016-08-01

    We present a theoretical formalism for resonance fluorescence radiating from a two-level system (TLS) driven by any periodic driving and coupled to multiple reservoirs. The formalism is derived analytically based on the combination of Floquet theory and Born-Markov master equation. The formalism allows us to calculate the spectrum when the Floquet states and quasienergies are analytically or numerically solved for simple or complicated driving fields. We can systematically explore the spectral features by implementing the present formalism. To exemplify this theory, we apply the unified formalism to comprehensively study a generic model that a harmonically driven TLS is simultaneously coupled to a radiative reservoir and a dephasing reservoir. We demonstrate that the significant features of the fluorescence spectra, the driving-induced asymmetry and the dephasing-induced asymmetry, can be attributed to the violation of detailed balance condition, and explained in terms of the driving-related transition quantities between Floquet-states and their steady populations. In addition, we find the distinguished features of the fluorescence spectra under the biharmonic and multiharmonic driving fields in contrast with that of the harmonic driving case. In the case of the biharmonic driving, we find that the spectra are significantly different from the result of the RWA under the multiple resonance conditions. By the three concrete applications, we illustrate that the present formalism provides a routine tool for comprehensively exploring the fluorescence spectrum of periodically strongly driven TLSs.

  7. Asymmetric signal amplification for simultaneous SERS detection of multiple cancer markers with significantly different levels.

    PubMed

    Ye, Sujuan; Wu, Yanying; Zhai, Xiaomo; Tang, Bo

    2015-08-18

    Simultaneous detection of cancer biomarkers holds great promise for the early diagnosis of different cancers. However, in the presence of high-concentration biomarkers, the signals of lower-expression biomarkers are overlapped. Existing techniques are not suitable for simultaneously detecting multiple biomarkers at concentrations with significantly different orders of magnitude. Here, we propose an asymmetric signal amplification method for simultaneously detecting multiple biomarkers with significantly different levels. Using the bifunctional probe, a linear amplification mode responds to high-concentration markers, and quadratic amplification mode responds to low-concentration markers. With the combined biobarcode probe and hybridization chain reaction (HCR) amplification method, the detection limits of microRNA (miRNA) and ATP via surface-enhanced Raman scattering (SERS) detection are 0.15 fM and 20 nM, respectively, with a breakthrough of detection concentration difference over 11 orders of magnitude. Furthermore, successful determination of miRNA and ATP in cancer cells supports the practicability of the assay. This methodology promises to open an exciting new avenue for the detection of various types of biomolecules. PMID:26218034

  8. Serum uric acid level in patients with relapsing-remitting multiple sclerosis.

    PubMed

    Ashtari, Fereshteh; Bahar, Mohammadali; Aghaei, Maryam; Zahed, Arash

    2013-05-01

    Uric acid (UA) is a hydrophilic antioxidant product associated with multiple sclerosis (MS). We conducted a randomized case-control study to evaluate the serum level of UA in different phases of MS in comparison with levels in a healthy control population. Serum UA was checked in 130 patients with relapsing-remitting MS (85 patients in remitting and 45 patients in relapsing phase) and 50 age-matched controls using a quantitative enzyme-linked immunosorbent assay (ELISA). The mean concentrations of UA in serum was 6.41(±3.18)mg/dL in patients with remitting MS, 4.76(±1.66)mg/dL in patients with relapsing MS and 6.33(±2.94)mg/dL in controls. There was a significant difference between mean UA concentration in relapsing MS and remitting MS (p<0.001), and between patients with relapsing MS and controls (p=0.002); however, the difference between levels for patients in the remitting phase of MS and the control group was not significant (p=0.87). It seems probable that UA has a role in the prevention of disease activity in MS. PMID:23528410

  9. A Compendium of Caenorhabditis elegans RNA Binding Proteins Predicts Extensive Regulation at Multiple Levels

    PubMed Central

    Tamburino, Alex M.; Ryder, Sean P.; Walhout, Albertha J. M.

    2013-01-01

    Gene expression is regulated at multiple levels, including transcription and translation, as well as mRNA and protein stability. Although systems-level functions of transcription factors and microRNAs are rapidly being characterized, few studies have focused on the posttranscriptional gene regulation by RNA binding proteins (RBPs). RBPs are important to many aspects of gene regulation. Thus, it is essential to know which genes encode RBPs, which RBPs regulate which gene(s), and how RBP genes are themselves regulated. Here we provide a comprehensive compendium of RBPs from the nematode Caenorhabditis elegans (wRBP1.0). We predict that as many as 887 (4.4%) of C. elegans genes may encode RBPs ~250 of which likely function in a gene-specific manner. In addition, we find that RBPs, and most notably gene-specific RBPs, are themselves enriched for binding and modification by regulatory proteins, indicating the potential for extensive regulation of RBPs at many different levels. wRBP1.0 will provide a significant contribution toward the comprehensive delineation of posttranscriptional regulatory networks and will provide a resource for further studies regulation by RBPs. PMID:23390605

  10. Climate change and freshwater ecosystems: impacts across multiple levels of organization

    PubMed Central

    Woodward, Guy; Perkins, Daniel M.; Brown, Lee E.

    2010-01-01

    Fresh waters are particularly vulnerable to climate change because (i) many species within these fragmented habitats have limited abilities to disperse as the environment changes; (ii) water temperature and availability are climate-dependent; and (iii) many systems are already exposed to numerous anthropogenic stressors. Most climate change studies to date have focused on individuals or species populations, rather than the higher levels of organization (i.e. communities, food webs, ecosystems). We propose that an understanding of the connections between these different levels, which are all ultimately based on individuals, can help to develop a more coherent theoretical framework based on metabolic scaling, foraging theory and ecological stoichiometry, to predict the ecological consequences of climate change. For instance, individual basal metabolic rate scales with body size (which also constrains food web structure and dynamics) and temperature (which determines many ecosystem processes and key aspects of foraging behaviour). In addition, increasing atmospheric CO2 is predicted to alter molar CNP ratios of detrital inputs, which could lead to profound shifts in the stoichiometry of elemental fluxes between consumers and resources at the base of the food web. The different components of climate change (e.g. temperature, hydrology and atmospheric composition) not only affect multiple levels of biological organization, but they may also interact with the many other stressors to which fresh waters are exposed, and future research needs to address these potentially important synergies. PMID:20513717