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Sample records for near-shore anoxic basin

  1. Material transport from the near shore to the basinal environment in the southern Baltic Sea. II: Synthesis of data on origin and properties of material

    NASA Astrophysics Data System (ADS)

    Emeis, K.; Christiansen, C.; Edelvang, K.; Jähmlich, S.; Kozuch, J.; Laima, M.; Leipe, T.; Löffler, A.; Lund-Hansen, L. C.; Miltner, A.; Pazdro, K.; Pempkowiak, J.; Pollehne, F.; Shimmield, T.; Voss, M.; Witt, G.

    2002-07-01

    The Pomeranian Bight (southern Baltic Sea) is a mixing zone between waters of the Baltic Proper and the river Oder, which drains a densely populated and highly industrialised catchment of central Europe. The bight is a nondepositional area, and all material produced in its water column, from erosion of strata at the seafloor and cliffs, and delivered by rivers, is transported near the seafloor to the depositional areas of the Arkona, Bornholm and Gdansk basins. In this contribution, we assess the origin, transformation and mass fluxes of material through the bight based on an integrated field study conducted in the period 1996-1998. The transport mechanism is by wave- and current-induced resuspension and settling cycles, which effectively enrich organic-rich material and associated substances (organic pollutants, heavy metals) in deeper water; the estimated transport time is less than 6 months. The phases in which the material is transported are suspended matter in the water column, a particle- and aggregate-rich benthic boundary layer of <1 m above the seafloor and a layer of fluffy material fed from the two other sources that covers the sandy near-shore sediments as a discrete phase; it collects up to 130 g m -2 of particulate material after quiescent periods lasting several days. It is easily resuspended at shear velocities around 5 cm s -1 and is recycled into the suspended matter and benthic boundary layer pools of material. In deeper waters (>20 m water depth), the fluffy layer is not readily distinguished from the underlying soft, organic-rich sediment and the change in physical and chemical properties is gradual. The organic matter passing through the coastal zone in the southern Baltic is unaffected by biological or chemical modifications in composition. We find no evidence for a preferential removal of nitrogen or phosphorus, even if the speciation of phosphorus changes from biological compounds to minerals. The compositional changes which we see, i

  2. Anoxic basins of the eastern Mediterranean: An overview

    NASA Astrophysics Data System (ADS)

    Cita, M. B.

    1991-02-01

    It is well known that the Mediterranean Sea underwent several episodes of basin-wide stagnation in the Plio/Pleistocene, but extant anoxic basins were first discovered between 1983 and 1984 in the Strabo Trench and in the southwestern slopes of the Mediterranean Ridge, facing the Sirte Abyssal Plain. Since then, several expeditions were carried out to investigate the geology and physiography of the basins as well as the physical and chemical characters of the water column. Although the geodynamic settings of the Tyro and Bannock basins are quite different, they are very deep, closed and filled by dense, salty, cold brines, whose presence is attributed to submarine dissolution of Messinian evaporites. Bannock Basin is interpreted as a collapse basin, with a complex configuration, central domes and several satellite basins most of which are anoxic. Unlike the Tyro Basin, it is characterized by precipitation of gypsum, occurring as euhedral crystals within the sediments, and dredged along the steep wall bordering the main basin to the East. The interface separating normal seawater from the brines corresponds to a well-defined pycnocline with a density contrast of approximately 20%, where strong bacterial activity seems to occur and a sudden decrease in transmittance is recorded. Studies on the water column document drastic changes of all the various parameters measured (O2, H2S, Ca, PO4, Ba) across the interface. Sediments deposited beneath the brines are anoxic. This kind of geologically induced anoxia is persistent and diachronous, in contrast with the isochronous, episodic, repetitive and climatically induced anoxia recorded in the same area of the eastern Mediterranean.

  3. Microbial Biomass and Activity Distribution in an Anoxic, Hypersaline Basin

    PubMed Central

    LaRock, Paul A.; Lauer, Ray D.; Schwarz, John R.; Watanabe, Kathleen K.; Wiesenburg, Denis A.

    1979-01-01

    The Orca Basin is a hypersaline depression in the northern Gulf of Mexico with anoxic conditions observed in the lower 200 m of the water column. Measurements of adenosine 5′-triphosphate, heterotrophic potential, and uridine uptake made above and across the interface into the anoxic zone revealed the presence of an active microbial population approximately 100 m above the interface. Biomass and activity decreased at and just below the interface but increased near the bottom, consistent with similar observations made in the Cariaco Trench. The maximum adenosine 5′-triphosphate concentration above the interface of 5.9 ng/liter (2,173 m) is about eight times greater than the value found in oxygenated waters of corresponding depth in the absence of an anoxic zone. The maximum adenosine 5′-triphosphate concentration in the anoxic zone is approximately 15 times greater than that found in oxygenated water of similar depth, suggesting anoxia will support the development of a larger bacterial population. Our findings suggest that autotrophic bacteria may be the dominant physiological group in the region just above the interface. PMID:16345355

  4. Microbial biomass and activity distribution in an anoxic, hypersaline basin.

    PubMed

    Larock, P A; Lauer, R D; Schwarz, J R; Watanabe, K K; Wiesenburg, D A

    1979-03-01

    The Orca Basin is a hypersaline depression in the northern Gulf of Mexico with anoxic conditions observed in the lower 200 m of the water column. Measurements of adenosine 5'-triphosphate, heterotrophic potential, and uridine uptake made above and across the interface into the anoxic zone revealed the presence of an active microbial population approximately 100 m above the interface. Biomass and activity decreased at and just below the interface but increased near the bottom, consistent with similar observations made in the Cariaco Trench. The maximum adenosine 5'-triphosphate concentration above the interface of 5.9 ng/liter (2,173 m) is about eight times greater than the value found in oxygenated waters of corresponding depth in the absence of an anoxic zone. The maximum adenosine 5'-triphosphate concentration in the anoxic zone is approximately 15 times greater than that found in oxygenated water of similar depth, suggesting anoxia will support the development of a larger bacterial population. Our findings suggest that autotrophic bacteria may be the dominant physiological group in the region just above the interface. PMID:16345355

  5. Use of remote sensing in shoreline and near shore management

    NASA Technical Reports Server (NTRS)

    Capper, J. R.

    1972-01-01

    The legal aspects of resources management to regulate near-shore and shoreline area activities in the Chesapeake Bay are discussed. The need for information and acquisition in order to define the resources prior to developing legislation on resources management is explained. The steps which are followed in devising the regulatory legislation and enforcing its provisions are outlined.

  6. Near shore-wetland fish movements in the Great Lakes

    EPA Science Inventory

    Linkages of Great Lakes coastal wetlands and near shore habitats are under-explored, yet 90 species of fish are known to utilize wetlands for spawning and/or nursery habitat. The duration and frequency of wetland use for pelagic species with mobile adult stages is also poorly un...

  7. ENHANCED HYDRODYNAMICAL-NUMERICAL MODEL FOR NEAR-SHORE PROCESSES

    EPA Science Inventory

    An optimized version of a multilayer Hansen type Hydrodynamical-Numerical (HN) model is presented and discussed here as the basis for the following experimental extensions and enhancements developed to more appropriately handle near-shore processes: Non-linear term extension to f...

  8. Trace metal geochemistry in deep hypersaline anoxic basin in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Oliveri, Elvira; Sprovieri, Mario; Salvagio Manta, Daniela; Traina, Anna; Mazzola, Salvo

    2014-05-01

    Trace metals accumulation in marine sediments is primarily regulated by redox conditions; specifically, in the geological record, ancient anoxic sediments appear characterized by significant enrichments in redox sensitive elements. In the modern sedimentary record, examples of extreme limitations in dynamic circulation at the sea bottom are represented by the fascinating hypersaline anoxic basins, recently explored in the eastern Mediterranean Sea. These basins present a peculiar layer of "brine" (a mass water with salinity >300o) above the bottom sediments. The seawater-brine is generally located at a depth of about 3000 m below sea level with a thickness up to hundred meters. This transition zone characterized by steep pycno- and chemoclines passes with evident gradients of salinity and Eh to an extremely salty, anoxic a sulfuric seawater (brine). Here, we present geochemical results from two deep hypersaline anoxic basins discovered during two R/V Urania cruises (September 2008,2009), the Thetis and Kryos Basin (22°08'E 34°41'N, 22°01'E 34°56'N). Sediments appear depleted in organic matter (TOC 0.17-1.28o) and some redox-sensitive trace metals (As, Fe, Co, Cu, Zn) do not show the classical enrichments reported for anoxic sediments (e.g., sapropel). The only trace metal favored in the sedimentary accumulation seems to be the Mo. In particular, the documented low Mo/TOC ratios suggest strongly restricted conditions and limited deepwater renewal, and evidence the role played by the hydrographic control on redox conditions and trace metals accumulation in the studied sediments. A comparison among trace metal distribution patterns in hypersaline basins with sediments of other recent anoxic basins shows that the Cr, Ni, V and Zn concentrations are generally comparable thus suggesting similar mechanisms for metal enrichments. On the other hand, a comparison with the geochemistry of ancient anoxic sediments suggests that these anoxic hypersaline basins do not offer

  9. Predictive isotopic biogeochemistry: hydrocarbons from anoxic marine basins

    NASA Technical Reports Server (NTRS)

    Freeman, K. H.; Wakeham, S. G.; Hayes, J. M.

    1994-01-01

    Carbon isotopic compositions were determined for individual hydrocarbons in water column and sediment samples from the Cariaco Trench and Black Sea. In order to identify hydrocarbons derived from phytoplankton, the isotopic compositions expected for biomass of autotrophic organisms living in surface waters of both localities were calculated based on the concentrations of CO2(aq) and the isotopic compositions of dissolved inorganic carbon. These calculated values are compared to measured delta values for particulate organic carbon and for individual hydrocarbon compounds. Specifically, we find that lycopane is probably derived from phytoplankton and that diploptene is derived from the lipids of chemoautotrophs living above the oxic/anoxic boundary. Three acyclic isoprenoids that have been considered markers for methanogens, pentamethyleicosane and two hydrogenated squalenes, have different delta values and apparently do not derive from a common source. Based on the concentration profiles and isotopic compositions, the C31 and C33 n-alkanes and n-alkenes have a similar source, and both may have a planktonic origin. If so, previously assigned terrestrial origins of organic matter in some Black Sea sediments may be erroneous.

  10. Monitoring of beach enteromorpha variation with near shore video

    NASA Astrophysics Data System (ADS)

    Hu, Yali; Yu, Xinsheng; Yan, Zhijin; Yi, Weidong

    2014-07-01

    Beach is an important coastal protective barrier and tourism resources. Beach environment monitoring can help beach managers to make feasible decisions. Digital image of video monitoring technology can provide high resolution information of temporal and spatial variation of near shore in real time. The application of Video monitoring technology has been implemented in Qingdao's Shilaoren beach. The clustering method based on Gaussian mixture model is applied to extract beach enteromorpha changs for the digital images. Analysis results show that, the period of enteromorpha in Qingdao's Shilaoren beach was mainly from the early July to the mid-August in 2011, and the decline of enteromorpha is mainly associated with the rising temperature in the mid-August. Storm has significant impact on the beach enteromorpha. Tourists' activity space on the beach will decrease due to the enteromorpha covering on the beach, which affects beach tourism activities. Therefore, it's necessary to make preventive measures to avoid enteromorpha piling up on the beach, which is of great importance to the bathing beach environment and tourism development.

  11. Iron isotope fractionation in marine invertebrates in near shore environments

    NASA Astrophysics Data System (ADS)

    Emmanuel, S.; Schuessler, J. A.; Vinther, J.; Matthews, A.; von Blanckenburg, F.

    2014-04-01

    Chitons (Mollusca) are marine invertebrates that produce radula (teeth or rasping tongue) containing high concentrations of biomineralized magnetite and other iron bearing minerals. As Fe isotope signatures are influenced by redox processes and biological fractionation, Fe isotopes in chiton radula might be expected to provide an effective tracer of ambient oceanic conditions and biogeochemical cycling. Here, in a pilot study to measure Fe isotopes in marine invertebrates, we examine Fe isotopes in modern marine chiton radula collected from different locations in the Atlantic and Pacific oceans to assess the range of isotopic values, and to test whether or not the isotopic signatures reflect seawater values. Furthermore, by comparing two species that have very different feeding habits but collected from the same location, we infer a possible link between diet and Fe isotopic signatures. Values of δ56Fe (relative to IRMM-014) in chiton teeth range from -1.90 to 0.00‰ (±0.05‰ (2σ) uncertainty in δ56Fe), probably reflecting a combination of geographical control and biological fractionation processes. Comparison with published local surface seawater Fe isotope data shows a consistent negative offset of chiton teeth Fe isotope compositions relative to seawater. Strikingly, two different species from the same locality in the North Pacific (Puget Sound, Washington, USA) have distinct isotopic signatures. Tonicella lineata, which feeds on red algae, has a mean δ56Fe of -0.65 ± 0.26‰ (2σ, 3 specimens), while Mopalia muscosa, which feeds primarily on green algae, shows lighter isotopic values with a mean δ56Fe of -1.47 ± 0.98‰ (2σ, 5 specimens). Although chitons are not simple recorders of the ambient seawater Fe isotopic signature, these preliminary results suggest that Fe isotopes provide information concerning Fe biogeochemical cycling in near shore environments, and might be used to probe sources of Fe in the diets of different organisms.

  12. Temporal stability and origin of chemoclines in the deep hypersaline anoxic Urania basin

    NASA Astrophysics Data System (ADS)

    Goldhammer, Tobias; Schwärzle, Andreas; Aiello, Ivano W.; Zabel, Matthias

    2015-06-01

    Submarine brine lakes feature sharp and persistent concentration gradients between seawater and brine, though these should be smoothed out by free diffusion in open ocean settings. The anoxic Urania basin of the eastern Mediterranean contains an ultrasulfidic, hypersaline brine of Messinian origin above a thick layer of suspended sediments. With a dual modeling approach we reconstruct its contemporary stratification by geochemical solute transport fundamentals and show that thermal convection is required to maintain mixing in the brine and mud layer. The origin of the Urania basin stratification was dated to 1650 years B.P., which may be linked to a major earthquake in the region. The persistence of the chemoclines may be key to the development of diverse and specialized microbial communities. Ongoing thermal convection in the fluid mud layer may have important yet unresolved consequences for sedimentological and geochemical processes, also in similar environments.

  13. The isotopic composition of authigenic chromium in anoxic marine sediments: A case study from the Cariaco Basin

    NASA Astrophysics Data System (ADS)

    Reinhard, Christopher T.; Planavsky, Noah J.; Wang, Xiangli; Fischer, Woodward W.; Johnson, Thomas M.; Lyons, Timothy W.

    2014-12-01

    Chromium (Cr) isotopes are an emerging proxy for tracking redox processes at the Earth's surface. However, there has been limited exploration of the Cr isotope record of modern and recent marine sediments. The basic inorganic chemistry of Cr suggests that anoxic marine basins should factor prominently in the global Cr cycle and that sediments deposited within anoxic basins may offer a valuable Cr isotope archive throughout Earth's history. Here, we present δ53Cr data from sediments of the Cariaco Basin, Venezuela-a 'type' environment for large, perennially anoxic basins with a relatively strong hydrological connection to the global oceans. We document a marked positive shift in bulk δ53Cr values following the termination of the Last Glacial Maximum, followed by relative stasis. Based on a suite of independent redox proxies, this transition marks a switch from oxic to persistently anoxic and sulfidic (euxinic) depositional conditions within the basin. We find good agreement between two independent approaches toward estimating the δ53Cr composition of authigenic Cr in euxinic Cariaco Basin sediments and that these estimates are very similar to the δ53Cr composition of modern open Atlantic Ocean seawater. These data, together with considerations of reaction kinetics and mass balance within the Cariaco Basin, are consistent with the hypothesis that anoxic marine settings can serve as a chemical archive of first-order trends in seawater δ53Cr composition. Additionally, the Cariaco Basin data suggest that there has been secular stability in the average δ53Cr value of Atlantic seawater over the last ∼15 kyr.

  14. Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin

    PubMed Central

    Pachiadaki, Maria G; Yakimov, Michail M; LaCono, Violetta; Leadbetter, Edward; Edgcomb, Virginia

    2014-01-01

    Deep-sea hypersaline anoxic basins (DHABs) in the Eastern Mediterranean Sea are considered some of the most hostile environments on Earth. Little is known about the biochemical adaptations of microorganisms living in these habitats. This first metatranscriptome analysis of DHAB samples provides significant insights into shifts in metabolic activities of microorganisms as physicochemical conditions change from deep Mediterranean sea water to brine. The analysis of Thetis DHAB interface indicates that sulfate reduction occurs in both the upper (7.0–16.3% salinity) and lower (21.4–27.6%) halocline, but that expression of dissimilatory sulfate reductase is reduced in the more hypersaline lower halocline. High dark-carbon assimilation rates in the upper interface coincided with high abundance of transcripts for ribulose 1,5-bisphosphate carboxylase affiliated to sulfur-oxidizing bacteria. In the lower interface, increased expression of genes associated with methane metabolism and osmoregulation is noted. In addition, in this layer, nitrogenase transcripts affiliated to uncultivated putative methanotrophic archaea were detected, implying nitrogen fixation in this anoxic habitat, and providing evidence of linked carbon, nitrogen and sulfur cycles. PMID:24950109

  15. Analysis of fish movements between Great Lakes coastal wetlands and near shore habitat via otolith microchemistry

    EPA Science Inventory

    Great Lakes coastal wetlands are unique habitats with physical connections with near shore environments. This facilitates the exchange of energy between habitats in a principle known as habitat coupling. Coupling can be facilitated by movements of consumers; however, wetland us...

  16. Environmental selection of protistan plankton communities in hypersaline anoxic deep-sea basins, Eastern Mediterranean Sea

    PubMed Central

    Filker, Sabine; Stock, Alexandra; Breiner, Hans-Werner; Edgcomb, Virginia; Orsi, William; Yakimov, Michail M; Stoeck, Thorsten

    2013-01-01

    High salt concentrations, absence of light, anoxia, and high hydrostatic pressure make deep hypersaline anoxic basins (DHABs) in the Eastern Mediterranean Sea one of the most polyextreme habitats on Earth. Taking advantage of the unique chemical characteristics of these basins, we tested the effect of environmental selection and geographic distance on the structure of protistan communities. Terminal restriction fragment length polymorphism (T-RFLP) analyses were performed on water samples from the brines and seawater/brine interfaces of five basins: Discovery, Urania, Thetis, Tyro, and Medee. Using statistical analyses, we calculated the partitioning of diversity among the ten individual terminal restriction fragment (T-RF) profiles, based on peak abundance and peak incidence. While a significant distance effect on spatial protistan patterns was not detected, hydrochemical gradients emerged as strong dispersal barriers that likely lead to environmental selection in the DHAB protistan plankton communities. We identified sodium, magnesium, sulfate, and oxygen playing in concerto as dominant environmental drivers for the structuring of protistan plankton communities in the Eastern Mediterranean DHABs. PMID:23239531

  17. Environmental selection of protistan plankton communities in hypersaline anoxic deep-sea basins, Eastern Mediterranean Sea.

    PubMed

    Filker, Sabine; Stock, Alexandra; Breiner, Hans-Werner; Edgcomb, Virginia; Orsi, William; Yakimov, Michail M; Stoeck, Thorsten

    2013-02-01

    High salt concentrations, absence of light, anoxia, and high hydrostatic pressure make deep hypersaline anoxic basins (DHABs) in the Eastern Mediterranean Sea one of the most polyextreme habitats on Earth. Taking advantage of the unique chemical characteristics of these basins, we tested the effect of environmental selection and geographic distance on the structure of protistan communities. Terminal restriction fragment length polymorphism (T-RFLP) analyses were performed on water samples from the brines and seawater/brine interfaces of five basins: Discovery, Urania, Thetis, Tyro, and Medee. Using statistical analyses, we calculated the partitioning of diversity among the ten individual terminal restriction fragment (T-RF) profiles, based on peak abundance and peak incidence. While a significant distance effect on spatial protistan patterns was not detected, hydrochemical gradients emerged as strong dispersal barriers that likely lead to environmental selection in the DHAB protistan plankton communities. We identified sodium, magnesium, sulfate, and oxygen playing in concerto as dominant environmental drivers for the structuring of protistan plankton communities in the Eastern Mediterranean DHABs. PMID:23239531

  18. Chromium isotope composition of reducing and anoxic sediments from the Peru Margin and Cariaco Basin

    NASA Astrophysics Data System (ADS)

    Gueguen, B.; Planavsky, N.; Wang, X.; Algeo, T. J.; Peterson, L. C.; Reinhard, C. T.

    2014-12-01

    Chromium isotope systematics in marine sediments are now being used as a new redox proxy of the modern and ancient Earth's surface. Chromium is primarily delivered to the oceans by riverine inputs through weathering of Cr(III)-rich minerals present in the continental crust and oxidation of insoluble Cr(III) to soluble Cr(VI) species. Since oxidation-reduction reactions fractionate Cr isotopes whereby oxidized Cr(VI) species are preferentially enriched in heavy Cr isotopes, the Cr isotope composition of marine sediments may be useful tracers of redox conditions at the Earth's surface through geological time. Chromium is quantitatively removed in organic-rich sediments where reducing conditions prevail and promote reduction of Cr(VI) to Cr(III), and thus, these sediments should capture the ambient seawater Cr isotope composition. However, the isotopic composition of modern organic-rich sediments is poorly documented so far, and this step is essential for further modeling the global oceanic Cr isotope mass balance and assessing the effects of sedimentation and post-depositional processes on the marine Cr isotopes archive. In this study, we have characterized modern marine organic-rich sediments for their Cr isotope composition (δ53/52Cr) from two different settings, the Peru margin upwelling zone and the anoxic Cariaco Basin (Venezuela). Chromium isotopes were measured on a MC-ICP-MS (Nu Plasma) using a double-spike correction method. The authigenic fraction of shallow samples from the Peru margin sedimentary sequence with a high Total Organic Carbon (TOC) content (>10 wt%) yield an average δ53/52Crauthigenic value of +0.67 ±0.05 ‰ (2sd). However, although this value is close to the seawater value (Atlantic Ocean) and to Cariaco basin sediments (~ +0.6 ‰), reducing sediments from the Peru margin are on average isotopically slightly heavier, especially in samples having a low authigenic fraction and a low TOC content (δ53/52Crauthigenic values up to +1.30

  19. Constraining the temporal evolution of a deep hypersaline anoxic basin by 1D geochemical modelling

    NASA Astrophysics Data System (ADS)

    Goldhammer, Tobias; Aiello, Ivano; Zabel, Matthias

    2014-05-01

    Deep hypersaline anoxic basins (DHABs) are seafloor features of the accretionary prism of the Mediterranean Ridge. They have formed by the dissolution of exhumed shallow Messinian evaporites and subsequent concentration of the ultra-saline solutions in depressions on the seafloor. As an example, the horseshoe-shaped Urania basin is a DHAB south of the Peloponnese peninsula contains one of the most saline (about six times higher than Mediterranean seawater) and sulfidic (up to 15mM) water bodies of the Earth. Furthermore, its deepest part is underlain by a mud volcano that is responsible for the injection of fluid mud beneath the brine lake, with exceptionally sharp chemoclines between water column, brine, and mud layer. We here present a model approach to reconstruct the temporal aspects of the formation, dynamics and persistence of the brine-mud-system in the deep pit of the Urania Basin. Based on data from a sampling campaign with RV Meteor (Cruise M84/1 in February 2011), we set up a one-dimensional geochemical model that integrates diffusion, reaction and advective transport and mixing. Using a set of model preconditions, we aimed to answer (1) which processes are required to maintain the current situation of steep chemical gradients of the brine-mud-system, (2) how fast the current situation could have developed under different scenarios, and (3) how long such extraordinary conditions could have persisted through Earth's history. We further discuss the consequences of the temporal framework for the evolution of prokaryotic life in this extreme habitat.

  20. A new particulate Mn-Fe-P-shuttle at the redoxcline of anoxic basins

    NASA Astrophysics Data System (ADS)

    Dellwig, Olaf; Leipe, Thomas; März, Christian; Glockzin, Michael; Pollehne, Falk; Schnetger, Bernhard; Yakushev, Evgeniy V.; Böttcher, Michael E.; Brumsack, Hans-Jürgen

    2010-12-01

    Pelagic redoxclines of anoxic basins and deeps form the suboxic transition between oxygenated surface and anoxic or even sulfidic bottom waters. Intense element cycling, favoured by elevated microbial activity, causes steep gradients of physico-chemical parameters, nutrients and redox-sensitive trace metals. This study presents a conceptual model for authigenic particle formation at pelagic redoxclines, which is based on the tight coupling of Mn, Fe, and P cycles. Besides the well-known occurrence of Mn-oxides, textural (SEM-EDX) and geochemical (ICP-OES, ICP-MS) analyses of particles from the redoxclines of the Black Sea and the Baltic Sea (Gotland Basin, Landsort Deep) evidence the existence of earlier postulated Fe-oxyhydroxo-phosphates and emphasize mixed phases consisting of Mn-oxides and Fe-oxyhydroxo-phosphates as a new solid species. Most of the analyzed particles are star-shaped, of about 5 μm in size, and occur as single particles or aggregates without any morphological differences between Mn-oxides, Fe-oxyhydroxo-phosphates, and mixed phases. Throughout the redoxcline, these minerals show a general succession with maximum abundance of Mn-oxides above the redoxcline followed by mixed phases and almost pure Fe-phosphates within and below the redoxcline, respectively. Molar Fe/P ratios of single particles argue against the formation of known pure Fe-phosphates like vivianite or strengite at the lower end of the redox transition zone, but are consistent with recent experimental findings for colloidal P-bearing hydrous ferric oxides. Moreover, morphological similarities suggest the formation of irregular Fe-oxyhydroxo coatings due to oxidation of upward diffusing Fe 2+ by oxygen and stepwise replacement of Mn(IV) by Fe(III) on sinking MnO x particles followed by immediate adsorption or even co-precipitation of phosphate. Batch-type experiments using biogenic MnO x particles demonstrate the efficient potential of Fe 2+ oxidation by sinking MnO x particles

  1. Near shore groundwater acidification during and after a hydrological drought in the Lower Lakes, South Australia

    NASA Astrophysics Data System (ADS)

    Leyden, Emily; Cook, Freeman; Hamilton, Benjamin; Zammit, Benjamin; Barnett, Liz; Lush, Ann Marie; Stone, Dylan; Mosley, Luke

    2016-06-01

    An extreme hydrological drought in the Lower Lakes of the Murray-Darling Basin (Ramsar listed site) resulted in exposure of large areas of lake bed (25% of pre-drought lake area), containing the reduced iron (Fe) sulfide mineral pyrite. The pyrite oxidised and the resulting acidification (pH < 4) posed risks of acid and metals entering shallow groundwater and potentially discharging to the remaining lake water body. Piezometer transects were installed at four locations and monitoring of the groundwater levels and quality was undertaken for six years from 2009 (drought) to 2014 (4 years post-reinundation). Acidic (pH 3-5) groundwater was recorded at three of the four piezometer locations and included sites close to the lake water. The acidic groundwater (0.5-2 m below lake bed) at these sites is likely to have originated from the transport of acid from the upper oxidised sediment layer formed during the drought. High soluble metal (Fe, Al, Mn) levels were also recorded at acidic locations. Acidic shallow groundwater has persisted at many sites for over 4 years following reinundation post-drought, and is likely due to slow diffusion and limited sulfate reduction. Increases in dissolved Fe and Mn with decreases in redox potential suggest that reductive dissolution of Fe and Mn hydrous oxides and Fe oxy-hydroxysulfate minerals (e.g. jarosite) occurred post-drought. Groundwater hydraulic head gradients were low, indicating there was limited potential for groundwater to discharge to the lake. The hydraulic gradients at all locations were dynamic with complex relationships along the near-shore environment. The results highlight the long lasting and severe effects on groundwater that can occur following hydrological drought in aquatic environments with sulfidic sediments.

  2. Near shore groundwater acidification during and after a hydrological drought in the Lower Lakes, South Australia.

    PubMed

    Leyden, Emily; Cook, Freeman; Hamilton, Benjamin; Zammit, Benjamin; Barnett, Liz; Lush, Ann Marie; Stone, Dylan; Mosley, Luke

    2016-06-01

    An extreme hydrological drought in the Lower Lakes of the Murray-Darling Basin (Ramsar listed site) resulted in exposure of large areas of lake bed (25% of pre-drought lake area), containing the reduced iron (Fe) sulfide mineral pyrite. The pyrite oxidised and the resulting acidification (pH<4) posed risks of acid and metals entering shallow groundwater and potentially discharging to the remaining lake water body. Piezometer transects were installed at four locations and monitoring of the groundwater levels and quality was undertaken for six years from 2009 (drought) to 2014 (4years post-reinundation). Acidic (pH3-5) groundwater was recorded at three of the four piezometer locations and included sites close to the lake water. The acidic groundwater (0.5-2m below lake bed) at these sites is likely to have originated from the transport of acid from the upper oxidised sediment layer formed during the drought. High soluble metal (Fe, Al, Mn) levels were also recorded at acidic locations. Acidic shallow groundwater has persisted at many sites for over 4years following reinundation post-drought, and is likely due to slow diffusion and limited sulfate reduction. Increases in dissolved Fe and Mn with decreases in redox potential suggest that reductive dissolution of Fe and Mn hydrous oxides and Fe oxy-hydroxysulfate minerals (e.g. jarosite) occurred post-drought. Groundwater hydraulic head gradients were low, indicating there was limited potential for groundwater to discharge to the lake. The hydraulic gradients at all locations were dynamic with complex relationships along the near-shore environment. The results highlight the long lasting and severe effects on groundwater that can occur following hydrological drought in aquatic environments with sulfidic sediments. PMID:27107321

  3. Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments

    PubMed Central

    Bernhard, Joan M.; Kormas, Konstantinos; Pachiadaki, Maria G.; Rocke, Emma; Beaudoin, David J.; Morrison, Colin; Visscher, Pieter T.; Cobban, Alec; Starczak, Victoria R.; Edgcomb, Virginia P.

    2014-01-01

    Some of the most extreme marine habitats known are the Mediterranean deep hypersaline anoxic basins (DHABs; water depth ∼3500 m). Brines of DHABs are nearly saturated with salt, leading many to suspect they are uninhabitable for eukaryotes. While diverse bacterial and protistan communities are reported from some DHAB water-column haloclines and brines, the existence and activity of benthic DHAB protists have rarely been explored. Here, we report findings regarding protists and fungi recovered from sediments of three DHAB (Discovery, Urania, L’ Atalante) haloclines, and compare these to communities from sediments underlying normoxic waters of typical Mediterranean salinity. Halocline sediments, where the redoxcline impinges the seafloor, were studied from all three DHABs. Microscopic cell counts suggested that halocline sediments supported denser protist populations than those in adjacent control sediments. Pyrosequencing analysis based on ribosomal RNA detected eukaryotic ribotypes in the halocline sediments from each of the three DHABs, most of which were fungi. Sequences affiliated with Ustilaginomycotina Basidiomycota were the most abundant eukaryotic signatures detected. Benthic communities in these DHABs appeared to differ, as expected, due to differing brine chemistries. Microscopy indicated that only a low proportion of protists appeared to bear associated putative symbionts. In a considerable number of cases, when prokaryotes were associated with a protist, DAPI staining did not reveal presence of any nuclei, suggesting that at least some protists were carcasses inhabited by prokaryotic scavengers. PMID:25452749

  4. Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments.

    PubMed

    Bernhard, Joan M; Kormas, Konstantinos; Pachiadaki, Maria G; Rocke, Emma; Beaudoin, David J; Morrison, Colin; Visscher, Pieter T; Cobban, Alec; Starczak, Victoria R; Edgcomb, Virginia P

    2014-01-01

    Some of the most extreme marine habitats known are the Mediterranean deep hypersaline anoxic basins (DHABs; water depth ∼3500 m). Brines of DHABs are nearly saturated with salt, leading many to suspect they are uninhabitable for eukaryotes. While diverse bacterial and protistan communities are reported from some DHAB water-column haloclines and brines, the existence and activity of benthic DHAB protists have rarely been explored. Here, we report findings regarding protists and fungi recovered from sediments of three DHAB (Discovery, Urania, L' Atalante) haloclines, and compare these to communities from sediments underlying normoxic waters of typical Mediterranean salinity. Halocline sediments, where the redoxcline impinges the seafloor, were studied from all three DHABs. Microscopic cell counts suggested that halocline sediments supported denser protist populations than those in adjacent control sediments. Pyrosequencing analysis based on ribosomal RNA detected eukaryotic ribotypes in the halocline sediments from each of the three DHABs, most of which were fungi. Sequences affiliated with Ustilaginomycotina Basidiomycota were the most abundant eukaryotic signatures detected. Benthic communities in these DHABs appeared to differ, as expected, due to differing brine chemistries. Microscopy indicated that only a low proportion of protists appeared to bear associated putative symbionts. In a considerable number of cases, when prokaryotes were associated with a protist, DAPI staining did not reveal presence of any nuclei, suggesting that at least some protists were carcasses inhabited by prokaryotic scavengers. PMID:25452749

  5. Analysis of near-shore sea surface temperatures in the Northern Pacific

    EPA Science Inventory

    Recent studies report a warming trend in Pacific Ocean temperatures over the last 50 years. However, much less is known about temperature change in the near-coastal environment, which is particularly sensitive to climatic change. In near-shore regions in situ sea surface temper...

  6. What happens to near-shore habitat when lake and reservoir water levels decline?

    EPA Science Inventory

    Water management and drought can lead to increased fluctuation and declines in lake and reservoir water levels. These changes can affect near-shore physical habitat and the biotic assemblages that depend upon it. Structural complexity at the land-water interface of lakes promote...

  7. Do we have the tools and the smarts to quantify near shore conditions in Lake Michigan?

    EPA Science Inventory

    The off-shore waters in Lake Michigan have been approaching the oligotrophic state, and the lake wide total phosphorus concentration has met the Great Lakes Water Quality Agreement (GLWQA) target since the early 1980s. However, environmental concerns in the near shore, such as ex...

  8. Phosphorus regeneration and burial in near-shore marine sediments (the Gulf of Trieste, northern Adriatic Sea)

    NASA Astrophysics Data System (ADS)

    Ogrinc, N.; Faganeli, J.

    2006-05-01

    According to bioassay studies and high dissolved nutrient N/P ratios in the seawater column, phosphorus (P) is thought to control marine productivity in the northern Adriatic Sea. P in near-shore marine sediments of the Gulf of Trieste, the northernmost part of the Adriatic Sea, was investigated using pore water P distributions, and benthic P flux studies under oxic and anoxic conditions. The data show that P regeneration is up to three-fold more extensive in sediments overlain by oxygen-depleted waters and proceeds in parallel with Fe and Mn enhanced benthic fluxes. It appears from the incubation experiments that degradation of sedimentary organic matter is the main contribution to the flux of P at the sediment-water interface, while the release of phosphate adsorbed on the iron oxide surface is of minor importance. It appears that about 50% of P in the Gulf of Trieste is retained within in the sediments, probably bonded to clay minerals and carbonate grains or precipitated as fluoroapatite. In these sediments total P (P tot) is preserved preferentially over organic C (C org). P regenerated from surficial sediments contributes about 1/3 of the P that is assimilated by benthic microalgae. The phytoplankton P requirement should be entirely supplied from fresh-water sources. These results suggest that oxygen depletion in coastal areas caused by eutrophication enhances P regeneration from sediments, providing the additional P necessary for increased biological productivity. The development of anoxic bottom waters in coastal areas enhances the recycling of P, exacerbating the nutrient requirement in the area. A geochemical record of P burial in a longer sedimentary sequence revealed an increasing trend of P tot and organic P (P org) contents occurring approximately 50 years BP (after 1950), probably due to increasing use of inorganic fertilizers and detergents in the area.

  9. Predictive Modelling to Identify Near-Shore, Fine-Scale Seabird Distributions during the Breeding Season

    PubMed Central

    Warwick-Evans, Victoria C.; Atkinson, Philip W.; Robinson, Leonie A.; Green, Jonathan A.

    2016-01-01

    During the breeding season seabirds are constrained to coastal areas and are restricted in their movements, spending much of their time in near-shore waters either loafing or foraging. However, in using these areas they may be threatened by anthropogenic activities such as fishing, watersports and coastal developments including marine renewable energy installations. Although many studies describe large scale interactions between seabirds and the environment, the drivers behind near-shore, fine-scale distributions are not well understood. For example, Alderney is an important breeding ground for many species of seabird and has a diversity of human uses of the marine environment, thus providing an ideal location to investigate the near-shore fine-scale interactions between seabirds and the environment. We used vantage point observations of seabird distribution, collected during the 2013 breeding season in order to identify and quantify some of the environmental variables affecting the near-shore, fine-scale distribution of seabirds in Alderney’s coastal waters. We validate the models with observation data collected in 2014 and show that water depth, distance to the intertidal zone, and distance to the nearest seabird nest are key predictors in the distribution of Alderney’s seabirds. AUC values for each species suggest that these models perform well, although the model for shags performed better than those for auks and gulls. While further unexplained underlying localised variation in the environmental conditions will undoubtedly effect the fine-scale distribution of seabirds in near-shore waters we demonstrate the potential of this approach in marine planning and decision making. PMID:27031616

  10. Predictive Modelling to Identify Near-Shore, Fine-Scale Seabird Distributions during the Breeding Season.

    PubMed

    Warwick-Evans, Victoria C; Atkinson, Philip W; Robinson, Leonie A; Green, Jonathan A

    2016-01-01

    During the breeding season seabirds are constrained to coastal areas and are restricted in their movements, spending much of their time in near-shore waters either loafing or foraging. However, in using these areas they may be threatened by anthropogenic activities such as fishing, watersports and coastal developments including marine renewable energy installations. Although many studies describe large scale interactions between seabirds and the environment, the drivers behind near-shore, fine-scale distributions are not well understood. For example, Alderney is an important breeding ground for many species of seabird and has a diversity of human uses of the marine environment, thus providing an ideal location to investigate the near-shore fine-scale interactions between seabirds and the environment. We used vantage point observations of seabird distribution, collected during the 2013 breeding season in order to identify and quantify some of the environmental variables affecting the near-shore, fine-scale distribution of seabirds in Alderney's coastal waters. We validate the models with observation data collected in 2014 and show that water depth, distance to the intertidal zone, and distance to the nearest seabird nest are key predictors in the distribution of Alderney's seabirds. AUC values for each species suggest that these models perform well, although the model for shags performed better than those for auks and gulls. While further unexplained underlying localised variation in the environmental conditions will undoubtedly effect the fine-scale distribution of seabirds in near-shore waters we demonstrate the potential of this approach in marine planning and decision making. PMID:27031616

  11. Significance of anoxic slope basins to occurrence of hydrocarbons along flexure trend, Gulf of Mexico: a reappraisal

    SciTech Connect

    Dinkelman, M.G.; Curry, D.J.

    1987-05-01

    Recently, Tertiary anoxic slope basins have been proposed as the sources for much of the oil occurring along the Flexure Trend in the Gulf of Mexico. The intraslope basins are thought to have been formed in response to salt diapirism and concomitant salt withdrawal resulting from differential sediment loading between the basins and the diapirs, as well as due to associated faulting. Of the modern intraslope basins, the black, organic-rich muds accumulating in the Orca basin have especially attracted and are suggested to be modern analogs to late Tertiary source rocks accumulated and buried across the continental slope. Although the organic carbon content of the anoxic sediments in the Orca basin is generally high (2 to 3%), the concentration of preserved oil-generative organic matter in these sediments is low. Rock-Eval P2 yields are usually in the range of 340 to 1620 ppm, and hydrogen indices are generally less than 100. Pyrolysis-GC and 13C-NMR data show that up to 30 + % of the organic carbon is contained in carboxyl and other oxygenated groups, which are lost during diagenesis and early catagenesis of the sediments, and that much of the remainder is aromatized and degraded. The degradation was probably by oxidation during settling through the oxic water column. The geochemical data indicate, therefore, that the bulk of the organic carbon in the Orca basin is not capable of forming oil during catagenesis. Published regional cross sections across the Texas-Louisiana continental margin commonly show a thick (0.5-4 km), continuous salt sequence, sourcing salt diapirs and ridges, to underlie the Oligocene(.)/Miocene to Pleistocene sedimentary section of the outer continental shelf and slope.

  12. Exhumation of Messinian evaporites in the deep-sea and creation of deep anoxic brine-filled collapsed basins

    NASA Astrophysics Data System (ADS)

    Cita, Maria Bianca

    2006-06-01

    The first part of the paper summarizes some basic concepts concerning (a) the distribution of Messinian evaporites in the deepest parts of the Mediterranean Sea and (b) the Mediterranean Ridge accretionary wedge and its peculiar characteristics deriving from the presence of a substantial evaporitic body in the deforming sedimentary prism. Then five brine-filled anoxic collapsed basins (Tyro, Bannock, Urania, Atalante and Discovery), discovered from 1983 to 1994, are presented and discussed in their physiographic, geologic, hydrologic and geochemical characters. High density brines deriving from submarine dissolution of outcropping or subcropping evaporites accumulate at the bottom of collapsed basins, if they are not swept away by submarine currents. The interface separating normal sea-water from high density brines is sharp with a density contrast of about 20% and lies at 3200-3500 m below sea level. Strong bacterial activity is developing at the interface and living bacteria have been recovered from the anoxic salty brines. Thickness of the brines may be up to 500 m. Thermal stratification has been observed in three brine lakes. Exhumation and dissolution of Messinian evaporites in the Mediterranean Ridge occur in different tectonic settings: pull-apart basin (Tyro), subducting seamount close to the outer deformation front (Bannock Basin), top of a backstop (Urania, Atalante and Discovery Basins). Chemistry of the brines is strongly variable and suggests dissolution of different layers or levels of the Messinian suite. Discovery brines are the saltiest ever recorded in natural environment. Their saturation in Mg chloride (bischofite), the end product of sea-water evaporation, suggests that the deepest parts of the eastern Mediterranean were close to dryness at the end of the salinity crisis, strongly supporting the deep basin desiccation model.

  13. Basin-scale controls on the molybdenum-isotope composition of seawater during Oceanic Anoxic Event 2 (Late Cretaceous)

    NASA Astrophysics Data System (ADS)

    Dickson, Alexander J.; Jenkyns, Hugh C.; Porcelli, Donald; van den Boorn, Sander; Idiz, Erdem

    2016-04-01

    It is well established that the burial of organic carbon in marine sediments increased dramatically at a global scale at the Cenomanian-Turonian boundary (Oceanic Anoxic Event 2: OAE-2, ∼94 Myr ago, Late Cretaceous). Many localities containing chemostratigraphic expressions of this event are not, however, enriched in organic carbon, and point to a heterogeneous set of oceanographic and environmental processes operating in different ocean basins. These processes are difficult to reconstruct because of the uneven geographical distribution of sites recording OAE-2, thus limiting our understanding of the causes and palaeoceanographic consequences of the environmental changes that occurred at this time. A new, highly resolved molybdenum-isotope dataset is presented from the Cape Verde Basin (southern proto-North Atlantic Ocean) and a lower resolution record from the Tarfaya Basin, Morocco. The new data reveal periodic oscillations in the Mo-isotope composition of proto-North Atlantic Ocean sediments, from which coupled changes in the dissolved sulphide concentration and Mo inventories of the basin seawater can be inferred. The cyclic variations in sedimentary Mo-isotope compositions can be hypothetically linked to regional changes in the depth of the chemocline, and in the rate of seawater exchange between basinal waters and global seawater. The new data suggest that a global seawater Mo-isotope composition of ∼1.2‰ was reached very soon after the onset of OAE-2, implying a rapid expansion of marine deoxygenation coeval with, or slightly preceding, enhanced global rates of organic-carbon burial. During OAE-2, the modelled flux of Mo into anoxic sediments is likely to have been ∼60-125 times greater than at the present day, although the spatial extent of anoxia is unlikely to have been greater than 10% of the total seafloor.

  14. Survival of hatchery-reared lake trout stocked near shore and off shore in Lake Ontario

    USGS Publications Warehouse

    Elrod, Joseph H.

    1997-01-01

    Establishing a stock of mature, hatchery-reared fish is necessary to restore a self-sustaining population of lake trout Salvelinus namaycush in Lake Ontario. Stocking fish off shore rather than near shore to reduce predation on these fish by large lake trout or piscivorous birds may enhance survival of hatchery-reared fish and accelerate establishment of a population of adults. Results of an earlier study did not support routinely stocking fish off shore by helicopter in Lake Ontario, but stresses associated with helicopter stocking suggested another method of transporting fish off shore might enhance survival. I conducted this study to determine whether stocking lake trout off shore by barge would enhance first-year survival. Two lots of yearling lake trout were stocked at each of four locations in Lake Ontario in May 1992. One lot was stocked from shore, and an identical lot was transported by barge 3.4–10.4 km off shore of nearshore locations and stocked in water 46–52 m deep. Fish were recovered during trawl, gillnet, and creel surveys in 1992–1996. First-year survival of lake trout stocked off shore tended to be better than that of fish stocked near shore. Predation by double-crested cormorantsPhalacrocorax auritus likely affected survival of fish stocked near shore at two locations, 7 and 37 km, respectively, from a nesting colony of 5,443 pairs of double-crested cormorants. Predation by large lake trout remains a viable hypothesis, which explains, at least partially, lower survival of lake trout stocked near shore at two other locations. Stocking lake trout off shore of traditional nearshore stocking sites likely will enhance first-year survival of hatchery-reared fish and promote accumulation of an adult population, especially for those occassions where nearshore stocking locations are near nesting colonies of double-crested cormorants.

  15. Spatial extent and degree of oxygen depletion in the deep proto-North Atlantic basin during Oceanic Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    van Helmond, Niels A. G. M.; Ruvalcaba Baroni, Itzel; Sluijs, Appy; Sinninghe Damsté, Jaap S.; Slomp, Caroline P.

    2014-11-01

    organic matter burial due to widespread ocean anoxia across the Cenomanian/Turonian boundary event (˜94 Ma) resulted in a major perturbation of the global carbon cycle: the so-called Oceanic Anoxic Event 2 (OAE2). The characteristics and spatial distribution of the OAE2 deposits that formed in the deep basin of the proto-North Atlantic remain poorly described, however. Here we present proxy data of redox sensitive (trace) elements (e.g., Mo, Fe/Al, Corg/Ptot, and Mn) for OAE2 sediments from five Deep Sea Drilling Project and Ocean Drilling Program sites located in the deep proto-North Atlantic basin. Our results highlight that bottom waters in the entire deep proto-North Atlantic were anoxic during most of OAE2. Furthermore, regressions of Mo with total organic carbon content (TOC), previously shown to document the degree of water mass restriction, confirm that the water circulation in the proto-North Atlantic basin was severely restricted during OAE2. Comparison of these values to Mo/TOC ratios in the present-day Black Sea suggests a renewal frequency of the deep proto-North Atlantic water mass of between 0.5 and 4 ka, compared to a maximum of ˜200 years for the present-day northern Atlantic. The Plenus Cold Event, a cooler episode during the early stages of OAE2 hypothesized to be caused by declining pCO2 due to extensive burial of organic matter, appears to have led to temporary re-oxygenation of the bottom water in the deep proto-North Atlantic basin during OAE2.

  16. Diel variation in near-shore great lakes fish assemblages and implications for assessment sampling and coastal management

    USGS Publications Warehouse

    McKenna, J.E., Jr.

    2008-01-01

    I compared fish assemblages captured in three different microhabitats (shoreline, pelagic near-shore, and benthic near-shore) during day and night fishing in different protection (inside bay or tributary vs. outside in Lake Ontario proper) and turbidity regimes of four near-shore areas of Lake Ontario. The effects of diel movement and availability to gear were clearly evident. Fish assemblages were consistently and significantly more diverse at night than during the day, with nighttime assemblages often being supersets of daytime assemblages. Evidence for a turbidity effect was much weaker than the effects of nocturnal movements and changes in availability to the gear associated with darkness. Nighttime sampling is more likely to capture the full array of species in near-shore areas of the Great Lakes than daytime sampling.

  17. Monitoring Watershed Water Quality Impacts on Near-Shore Coral Reef Ecosystems in American Samoa using NASA Earth Observations

    NASA Astrophysics Data System (ADS)

    Teaby, A.; Price, J.; Minovitz, D.; Makely, L.; Torres-Perez, J. L.; Schmidt, C.; Guild, L. S.; Palacios, S. L.

    2014-12-01

    Land use changes can greatly increase erosion and sediment loads reaching watersheds and downstream coastal waters. In coastal environments with steep terrain and small drainage basins, sedimentation directly influences water quality in near-shore marine environments. Poor water quality indicators (i.e., dissolved nutrients and high particulates) affect coral calcification, photosynthesis, and coral cover. The abundance, recruitment, and biodiversity of American Samoa's coral reefs have been heavily affected by population growth, land cover change, pollution, and sediment influx. Monitoring, managing, and protecting these fragile ecosystems remains difficult due to limited resource availability, steep terrain, and local land ownership. Despite extensive field hours, traditional field and lab-based water quality research produces temporally and spatially limited datasets. Using a 'ridge to reef' effort, this project built a management tool to assess coral reef vulnerability using land use, hydrology, water quality, and coral reef cover in American Samoa to provide local agencies and partners with spatial representation of water quality parameters and site-specific implications for coral reef vulnerability. This project used land cover classified from Landsat 7 and 8 images, precipitation data from NOAA, and physical ocean factors from Terra MODIS. Changes in land cover from 2000 to 2014 were also estimated using Landsat imagery. Final products were distributed to partners to enhance water quality management, community outreach, and coral reef conservation.

  18. Uranium in the Near-shore Aquatic Food Chain: Studies on Periphyton and Asian Clams

    SciTech Connect

    Bunn, Amoret L.; Miley, Terri B.; Eslinger, Paul W.; Brandt, Charles A.; Napier, Bruce A.

    2007-12-31

    The benthic aquatic organisms in the near-shore environment of the Columbia River are the first biological receptors that can be exposed to groundwater contaminants coming from the U.S. Department of Energy's Hanford Site. The primary contaminant of concern in the former nuclear fuels processing area at the Site, known as the 300 Area, is uranium. Currently, there are no national clean up criteria for uranium and ecological receptors. This report summarizes efforts to characterize biological uptake of uranium in the food chain of the benthic aquatic organisms and provide information to be used in future assessments of uranium and the ecosystem.

  19. Comparison of Vertical Distributions of Prokaryotic Assemblages in the Anoxic Cariaco Basin and Black Sea by Use of Fluorescence In Situ Hybridization†

    PubMed Central

    Lin, Xueju; Wakeham, Stuart G.; Putnam, Isabell F.; Astor, Yrene M.; Scranton, Mary I.; Chistoserdov, Andrei Y.; Taylor, Gordon T.

    2006-01-01

    Individual prokaryotic cells from two major anoxic basins, the Cariaco Basin and the Black Sea, were enumerated throughout their water columns using fluorescence in situ hybridization (FISH) with the fluorochrome Cy3 or horseradish peroxidase-modified oligonucleotide probes. For both basins, significant differences in total prokaryotic abundance and phylogenetic composition were observed among oxic, anoxic, and transitional (redoxcline) waters. Epsilon-proteobacteria, Crenarchaeota, and Euryarchaeota were more prevalent in the redoxclines, where previous studies reported high rates of chemoautotrophic production relative to those in waters above and below the redoxclines. Relative abundances of Archaea in both systems varied between 1% and 28% of total prokaryotes, depending on depth. The prokaryotic community composition varied between the two anoxic basins, consistent with distinct geochemical and physical conditions. In the Black Sea, the relative contributions of group I Crenarchaeota (median, 5.5%) to prokaryotic communities were significantly higher (P < 0.001; n = 20) than those of group II Euryarchaeota (median, 2.9%). In contrast, their proportions were nearly equivalent in the Cariaco Basin. Beta-proteobacteria were unexpectedly common throughout the Cariaco Basin's water column, accounting for an average of 47% of 4′,6′-diamidino-2-phenylindole (DAPI)-stained cells. This group was below the detection limit (<1%) in the Black Sea samples. Compositional differences between basins may reflect temporal variability in microbial populations and/or systematic differences in environmental conditions and the populations for which they select. PMID:16597973

  20. Massive marine methane emissions from near-shore shallow coastal areas.

    PubMed

    Borges, Alberto V; Champenois, Willy; Gypens, Nathalie; Delille, Bruno; Harlay, Jérôme

    2016-01-01

    Methane is the second most important greenhouse gas contributing to climate warming. The open ocean is a minor source of methane to the atmosphere. We report intense methane emissions from the near-shore southern region of the North Sea characterized by the presence of extensive areas with gassy sediments. The average flux intensities (~130 μmol m(-2) d(-1)) are one order of magnitude higher than values characteristic of continental shelves (~30 μmol m(-2) d(-1)) and three orders of magnitude higher than values characteristic of the open ocean (~0.4 μmol m(-2) d(-1)). The high methane concentrations (up to 1,128 nmol L(-1)) that sustain these fluxes are related to the shallow and well-mixed water column that allows an efficient transfer of methane from the seafloor to surface waters. This differs from deeper and stratified seep areas where there is a large decrease of methane between bottom and surface by microbial oxidation or physical transport. Shallow well-mixed continental shelves represent about 33% of the total continental shelf area, so that marine coastal methane emissions are probably under-estimated. Near-shore and shallow seep areas are hot spots of methane emission, and our data also suggest that emissions could increase in response to warming of surface waters. PMID:27283125

  1. Massive marine methane emissions from near-shore shallow coastal areas

    PubMed Central

    Borges, Alberto V.; Champenois, Willy; Gypens, Nathalie; Delille, Bruno; Harlay, Jérôme

    2016-01-01

    Methane is the second most important greenhouse gas contributing to climate warming. The open ocean is a minor source of methane to the atmosphere. We report intense methane emissions from the near-shore southern region of the North Sea characterized by the presence of extensive areas with gassy sediments. The average flux intensities (~130 μmol m−2 d−1) are one order of magnitude higher than values characteristic of continental shelves (~30 μmol m−2 d−1) and three orders of magnitude higher than values characteristic of the open ocean (~0.4 μmol m−2 d−1). The high methane concentrations (up to 1,128 nmol L−1) that sustain these fluxes are related to the shallow and well-mixed water column that allows an efficient transfer of methane from the seafloor to surface waters. This differs from deeper and stratified seep areas where there is a large decrease of methane between bottom and surface by microbial oxidation or physical transport. Shallow well-mixed continental shelves represent about 33% of the total continental shelf area, so that marine coastal methane emissions are probably under-estimated. Near-shore and shallow seep areas are hot spots of methane emission, and our data also suggest that emissions could increase in response to warming of surface waters. PMID:27283125

  2. Massive marine methane emissions from near-shore shallow coastal areas

    NASA Astrophysics Data System (ADS)

    Borges, Alberto V.; Champenois, Willy; Gypens, Nathalie; Delille, Bruno; Harlay, Jérôme

    2016-06-01

    Methane is the second most important greenhouse gas contributing to climate warming. The open ocean is a minor source of methane to the atmosphere. We report intense methane emissions from the near-shore southern region of the North Sea characterized by the presence of extensive areas with gassy sediments. The average flux intensities (~130 μmol m‑2 d‑1) are one order of magnitude higher than values characteristic of continental shelves (~30 μmol m‑2 d‑1) and three orders of magnitude higher than values characteristic of the open ocean (~0.4 μmol m‑2 d‑1). The high methane concentrations (up to 1,128 nmol L‑1) that sustain these fluxes are related to the shallow and well-mixed water column that allows an efficient transfer of methane from the seafloor to surface waters. This differs from deeper and stratified seep areas where there is a large decrease of methane between bottom and surface by microbial oxidation or physical transport. Shallow well-mixed continental shelves represent about 33% of the total continental shelf area, so that marine coastal methane emissions are probably under-estimated. Near-shore and shallow seep areas are hot spots of methane emission, and our data also suggest that emissions could increase in response to warming of surface waters.

  3. Could CO2-induced land-cover feedbacks alter near-shore upwelling regimes?

    PubMed Central

    Diffenbaugh, Noah S.; Snyder, Mark A.; Sloan, Lisa C.

    2004-01-01

    The response of marine and terrestrial environments to global changes in atmospheric carbon dioxide (CO2) concentrations will likely be governed by both responses to direct environmental forcing and responses to Earth-system feedbacks induced by that forcing. It has been proposed that anthropogenic greenhouse forcing will intensify coastal upwelling in eastern boundary current regions [Bakun, A. (1990) Science 247, 198–201]. Focusing on the California Current, we show that biophysical land-cover–atmosphere feedbacks induced by CO2 radiative forcing enhance the radiative effects of CO2 on land–sea thermal contrast, resulting in changes in eastern boundary current total seasonal upwelling and upwelling seasonality. Specifically, relative to CO2 radiative forcing, land-cover–atmosphere feedbacks lead to a stronger increase in peak- and late-season near-shore upwelling in the northern limb of the California Current and a stronger decrease in peak- and late-season near-shore upwelling in the southern limb. Such changes will impact both marine and terrestrial communities [Bakun, A. (1990) Science 247, 198–201; Soto, C. G. (2001) Rev. Fish Biol. Fish. 11, 181–195; and Agostini, V. N. & Bakun, A. (2002) Fish. Oceanogr. 11, 129–142], and these and other Earth-system feedbacks should be expected to play a substantial role in shaping the response of eastern boundary current regions to CO2 radiative forcing. PMID:14691256

  4. Near-shore hypoxia in the Chesapeake Bay: Patterns and relationships among physical factors

    NASA Astrophysics Data System (ADS)

    Breitburg, Denise L.

    1990-06-01

    Near-shore, shallow waters in the Chesapeake Bay periodically experience episodes of anoxia or severe hypoxia during summer. In order to examine the severity and temporal pattern of hypoxia, and environmental factors that may lead to such episodes, dissolved oxygen, salinity and temperature were measured at 15-min intervals during the summers of 1987 and 1988 in a western shore oyster bed. Bottom dissolved oxygen concentrations averaged lower at a 4-m site than at a 2-m site. At the 4-m site, dissolved oxygen concentrations dropped below 2 mg l -1 during approximately 40% of days and below 1 mg l -1 during approximately 10% of days each summer. However, diel fluctuations in oxygen concentrations were sufficiently large that even on days of the most severe oxygen minima, dissolved oxygen concentrations always reached or exceeded a level tolerable by most estuarine organisms during some part of the day. During episodes of severe hypoxia on the western shore of the Chesapeake Bay, oxygen minima (1) coincided with increased salinities and ebb tides, (2) were preceded by winds from the S-SSE (minima of ⩽0·5 1 mg l -1) or SW (minima of 0·6-1·1 mg l -1), and (3) were reached during 22.00-06.00 hours. Severe hypoxia at the study site therefore appeared to result from intrusions of bottom water, which were most effectively driven by southerly winds. Tidal currents were required to provide the final force that brought deep water close to shore. The diel pattern of intrusions is most likely caused by winds, which were often either too strong or had too weak a southerly component to permit intrusions (without near-shore mixing and reaeration) to occur during afternoon-early evening hours, and the diel periodicity of tides. Short-term fluctuations in temperature and salinity were not as great as fluctuations in dissolved oxygen when compared to seasonal fluctuations of each parameter. For many organisms, short-term fluctuations in temperature and salinity may therefore be

  5. Oceanic Anoxic Event 1b: insights and new data from the Poggio le Guaine section (Umbria-Marche Basin)

    NASA Astrophysics Data System (ADS)

    Sabatino, Nadia; Sprovieri, Mario; Coccioni, Rodolfo; Salvagio Manta, Daniela; Gardin, Silvia; Baudin, François

    2015-04-01

    The upper Aptian to lower Albian interval (~114-109 Ma) represents a crucial period during Earth's history, with a major evolution in the nature of mid-Cretaceous tectonics, sea level, climate, and marine plankton communities. Interestingly, it also includes multiple prominent black shale horizons that are the sedimentary expression of oceanic anoxic event (OAE) 1b. An high-resolution planktonic foraminiferal and calcareous nannofossil biostratigraphy in combination with an integrated study of multiple geochemical proxies (δ13Ccarb, δ13Corg, TOC, HI, CaCO3, trace elements/Al ratios) of the late Aptian-early Albian OAE 1b has been performed on the pelagic sedimentary sequence of Poggio le Guaine (Umbria-Marche Basin, central Italy). A comparison of the newly collected stable isotope carbon curve with the records from the Vocontian Basin (SE France), DSDP Site 545 and Hole 1049C provided a reliable and precise identification of the four main prominent black shale levels (113/Jacob, Kilian, Urbino/Paquier and Leenhardt) that definitively punctuate the OAE 1b. The studied record shows an increase in the marine organic carbon accumulation rate, in particular in the 113/Jacob and Urbino/Paquier levels. In the other black shales, TOC values are < 1%, with evidence of degraded marine organic matter. Completely anoxic conditions were never established during the sediment deposition, although evidence of oxygen depletion at the bottom of the basin is clearly documented by the distribution pattern of redox-sensitive trace metals. The results suggest an increase in organic carbon burial rates during the OAE 1b due to the effect of enhanced surface productivity, as supported by a major increase in Ba/Al, and reduced bottom water ventilation. Noteworthy, the Kilian and Urbino/Paquier levels from the PLG section are characterized by the absence of correlative shifts in δ13Ccarb and δ13Corg. The increase in the δ13Corg, values in these levels is explained by an increase in

  6. LANDSAT survey of near-shore ice conditions along the Arctic coast of Alaska

    NASA Technical Reports Server (NTRS)

    Stringer, W. J. (Principal Investigator); Barrett, S. A.

    1978-01-01

    The author has identified the following significant results. Winter and spring near-shore ice conditions were analyzed for the Beaufort Sea 1973-77, and the Chukchi Sea 1973-76. LANDSAT imagery was utilized to map major ice features related to regional ice morphology. Significant features from individual LANDSAT image maps were combined to yield regional maps of major ice ridge systems for each year of study and maps of flaw lead systems for representative seasons during each year. These regional maps were, in turn, used to prepare seasonal ice morphology maps. These maps showed, in terms of a zonal analysis, regions of statistically uniform ice behavior. The behavioral characteristics of each zone were described in terms of coastal processes and bathymetric configuration.

  7. Landsat survey of near-shore ice conditions along the Arctic coast of Alaska

    NASA Technical Reports Server (NTRS)

    Stringer, W. J. (Principal Investigator)

    1975-01-01

    The author has identified the following significant results. Comparison of late season U-2 color infrared sea ice photography and early ice season LANDSAT sea ice imagery has made possible the identification of subtle features seen on early season LANDSAT imagery in the near shore areas. The U-2 imagery positively linked these features to ice conditions generally not observable by LANDSAT because of the time of year when they take place. Ice formed in place largely as single sheets appears light while ice deformed by considerable rafting appears darker when viewed on LANDSAT imagery. Because the ice is snow-covered at the time this imagery is obtained, this underlying structure must be revealed by the topography of the snow surface, and the resulting light scattering characteristics.

  8. Design of the near shore seawater systems for an OTEC expanded test facility

    SciTech Connect

    Genens, L.; Stevens, H.

    1984-01-01

    Argonne National Laboratory (ANL) is preparing a design for expanded test facilities at the Seacoast Test Facility site, Keahole Point, Hawaii. Specific effort has been placed on the design of the near-shore/on-shore seawater systems. The seawater systems consist of a warm-water supply, a cold-water supply, a mixed discharge, and a land-based pumping station. Test facilities are planned that will utilize this thermal energy resource. This resource consists nominally of 1600 kg/s (25,000 gpm) of cold water and 4200 kg/s (65,000 gpm) of warm surface water, which will be used to support heat-exchanger and system tests and, with a turbine added, could produce a net power for the validation of closed- and open-cycle models now in planning at ANL and the Solar Energy Research Institute (SERI).

  9. Design of the near shore seawater systems for an OTEC expanded test facility

    NASA Astrophysics Data System (ADS)

    Genens, L.; Stevens, H.

    1984-03-01

    The preparation of a design for expanded test facilities at the seacoast test facility site, Keahole Point, Hawaii is outlined, the design of the near shore/on shore seawater system is emphasized. The seawater systems consist of a warm water supply, a cold water supply, a mixed discharge, and a land based pumping station. Test facilities are planned that will utilize this thermal energy resource. This resource consists nominally of 1600 kg/s of cold water and 4200 kg/s of warm surface water, which will be used to support heat exchanger and system tests and, with a turbine added, could produce a net power for the validation of closed and open cycle models.

  10. Radar signal return from near-shore surface and shallow subsurface features, Darien Province, Panama

    NASA Technical Reports Server (NTRS)

    Hanson, B. C.; Dellwig, L. F.

    1973-01-01

    The AN/APQ-97 radar imagery over eastern Panama is analyzed. The imagery was directed toward extraction of geologic and engineering data and the establishment of operational parameters. Subsequent investigations emphasized landform identification and vegetation distribution. The parameters affecting the observed return signal strength from such features are considered. Near-shore ocean phenomena were analyzed. Tidal zone features such as mud flats and reefs were identified in the near range, but were not detectable in the far range. Surface roughness dictated the nature of reflected energy (specular or diffuse). In surf zones, changes in wave train orientation relative to look direction, the slope of the surface, and the physical character of the wave must be considered. It is concluded that the establishment of the areal extent of the tidal flats, distributary channels, and reefs is practical only in the near to intermediate range under minimal low tide conditions.

  11. Low Bacterial Diversity and High Labile Organic Matter Concentrations in the Sediments of the Medee Deep-Sea Hypersaline Anoxic Basin

    PubMed Central

    Akoumianaki, Ioanna; Nomaki, Hidetaka; Pachiadaki, Maria; Kormas, Konstantinos Ar.; Kitazato, Hiroshi; Tokuyama, Hidekazu

    2012-01-01

    Studies in the center and margin of the Medee Basin, a Mediterranean deep-sea hypersaline anoxic basin, and at a reference site during Penelope cruise (2007), revealed the existence of a 7 m-thick halocline, with high salinity (328 psu), and high sedimentary organic carbon and biopolymer concentrations. The 194 16S rRNA sequences retrieved were grouped into 118 unique phylotypes. Pseudomonas gessardii, dominated in the center, while 33 phylotypes were detected at the margin and 73 at the reference site. The study suggested conditions hostile to bacteria in the sediments of the Medee Basin and preservation of sedimentary labile organic matter. PMID:22504432

  12. Artificial light on water attracts turtle hatchlings during their near shore transit.

    PubMed

    Thums, Michele; Whiting, Scott D; Reisser, Julia; Pendoley, Kellie L; Pattiaratchi, Charitha B; Proietti, Maira; Hetzel, Yasha; Fisher, Rebecca; Meekan, Mark G

    2016-05-01

    We examined the effect of artificial light on the near shore trajectories of turtle hatchlings dispersing from natal beaches. Green turtle (Chelonia mydas) hatchlings were tagged with miniature acoustic transmitters and their movements tracked within an underwater array of 36 acoustic receivers placed in the near shore zone. A total of 40 hatchlings were tracked, 20 of which were subjected to artificial light during their transit of the array. At the same time, we measured current speed and direction, which were highly variable within and between experimental nights and treatments. Artificial lighting affected hatchling behaviour, with 88% of individual trajectories oriented towards the light and spending, on average, 23% more time in the 2.25 ha tracking array (19.5 ± 5 min) than under ambient light conditions (15.8 ± 5 min). Current speed had little to no effect on the bearing (angular direction) of the hatchling tracks when artificial light was present, but under ambient conditions it influenced the bearing of the tracks when current direction was offshore and above speeds of approximately 32.5 cm s(-1). This is the first experimental evidence that wild turtle hatchlings are attracted to artificial light after entering the ocean, a behaviour that is likely to subject them to greater risk of predation. The experimental protocol described in this study can be used to assess the effect of anthropogenic (light pollution, noise, etc.) and natural (wave action, current, wind, moonlight) influences on the in-water movements of sea turtle hatchlings during the early phase of dispersal. PMID:27293795

  13. Coral bleaching: one disturbance too many for near-shore reefs of the Great Barrier Reef

    NASA Astrophysics Data System (ADS)

    Thompson, A. A.; Dolman, A. M.

    2010-09-01

    The dynamic nature of coral communities can make it difficult to judge whether a reef system is resilient to the current disturbance regime. To address this question of resilience for near-shore coral communities of the Great Barrier Reef (Australia) a data set consisting of 350 annual observations of benthic community change was compiled from existing monitoring data. These data spanned the period 1985-2007 and were derived from coral reefs within 20 km of the coast. During years without major disturbance events, cover increase of the Acroporidae was much faster than it was for other coral families; a median of 11% per annum compared to medians of less than 4% for other coral families. Conversely, Acroporidae were more severely affected by cyclones and bleaching events than most other families. A simulation model parameterised with these observations indicated that while recovery rates of hard corals were sufficient to compensate for impacts associated with cyclones and crown-of-thorns starfish, the advent of mass bleaching has lead to a significant change in the composition of the community and a rapid decline in hard coral cover. Furthermore, if bleaching events continue to occur with the same frequency and severity as in the recent past, the model predicts that the cover of Acroporidae will continue to decline. Although significant cover of live coral remains on near-shore reefs, and recovery is observed during inter-disturbance periods, it appears that this system will not be resilient to the recent disturbance regime over the long term. Conservation strategies for coral reefs should focus on both mitigating local factors that act synergistically to increase the susceptibility of Acroporidae to climate change while promoting initiatives that maximise the recovery potential from inevitable disturbances.

  14. Artificial light on water attracts turtle hatchlings during their near shore transit

    PubMed Central

    Thums, Michele; Whiting, Scott D.; Reisser, Julia; Pendoley, Kellie L.; Proietti, Maira; Hetzel, Yasha; Fisher, Rebecca; Meekan, Mark G.

    2016-01-01

    We examined the effect of artificial light on the near shore trajectories of turtle hatchlings dispersing from natal beaches. Green turtle (Chelonia mydas) hatchlings were tagged with miniature acoustic transmitters and their movements tracked within an underwater array of 36 acoustic receivers placed in the near shore zone. A total of 40 hatchlings were tracked, 20 of which were subjected to artificial light during their transit of the array. At the same time, we measured current speed and direction, which were highly variable within and between experimental nights and treatments. Artificial lighting affected hatchling behaviour, with 88% of individual trajectories oriented towards the light and spending, on average, 23% more time in the 2.25 ha tracking array (19.5 ± 5 min) than under ambient light conditions (15.8 ± 5 min). Current speed had little to no effect on the bearing (angular direction) of the hatchling tracks when artificial light was present, but under ambient conditions it influenced the bearing of the tracks when current direction was offshore and above speeds of approximately 32.5 cm s−1. This is the first experimental evidence that wild turtle hatchlings are attracted to artificial light after entering the ocean, a behaviour that is likely to subject them to greater risk of predation. The experimental protocol described in this study can be used to assess the effect of anthropogenic (light pollution, noise, etc.) and natural (wave action, current, wind, moonlight) influences on the in-water movements of sea turtle hatchlings during the early phase of dispersal. PMID:27293795

  15. Data summary for the near-shore sediment characterization task of the Clinch River Environmental Restoration Program

    SciTech Connect

    Levine, D.A.; Hargrove, W.W.; Campbell, K.R.; Wood, M.A.; Rash, C.D.

    1994-10-01

    This report presents the results of the Near-Shore Sediment Characterization Task of the Clinch River Environmental Restoration Program (CR-ERP). The goals of the task were to (1) determine the extent to which near-shore surface sediments are contaminated by releases from the Oak Ridge Reservation (ORR) and (2) provide data for the Watts Bar Reservoir Interagency Permitting Group (WBRIPG) to evaluate the human health risks from exposure to sediments during and following dredging operations. The data collected for this task are also to be used in the Remedial Investigation/Feasibility Study (RLTS) for the CR-ERP operable units (Lower Watts Bar and Clinch River) to characterize the human health risk associated with exposure to near-shore sediments throughout the Watts Bar Reservoir.

  16. Survey of radiological contaminants in the near-shore environment at the Hanford Site 100-N Area reactor

    SciTech Connect

    Van Verst, S.P.; Albin, C.L.; Patton, G.W.; Blanton, M.L.; Poston, T.M.; Cooper, A.T.; Antonio, E.J.

    1998-09-01

    Past operations at the Hanford Site 100-N Area reactor resulted in the release of radiological contaminants to the soil column, local groundwater, and ultimately to the near-shore environment of the Columbia River. In September 1997, the Washington State Department of Health (WDOH) and the Hanford Site Surface Environmental Surveillance Project (SESP) initiated a special study of the near-shore vicinity at the Hanford Site`s retired 100-N Area reactor. Environmental samples were collected and analyzed for radiological contaminants ({sup 3}H, {sup 90}Sr, and gamma/ emitters), with both the WDOH and SESP analyzing a portion of the samples. Samples of river water, sediment, riverbank springs, periphyton, milfoil, flying insects, clam shells, and reed canary grass were collected. External exposure rates were also measured for the near-shore environment in the vicinity of the 100-N Area. In addition, samples were collected at background locations above Vernita Bridge.

  17. Carbon dioxide production in surface sediments of temporarily anoxic basins (Baltic Sea) and resulting sediment-water interface fluxes

    NASA Astrophysics Data System (ADS)

    Böttcher, M. E.; Al-Raei, A. M.; Winde, V.; Lenz, C.; Dellwig, O.; Leipe, T.; Segl, M.; Struck, U.

    2009-04-01

    Organic matter is mineralized in marine sediments by microbial activity using predominantly oxygen, sulfate, and metal oxides as electron acceptors. Modern euxinic basins as found in the Baltic Sea or the Black Sea are of particular importance because they may serve as type systems for anoxia in Earth's history. We present here results from biogeochemical investigations carried out in the Baltic deeps (Gotland Basin, Landsort Deep) during the first scientific cruise of RV M.S. MERIAN in 2006, additionally during RV Prof. Penck cruises in 2006 and 2007. Short sediment cores were obtained with a multi-corer and analyzed for particulate and dissolved main, minor and trace elements, pH, DIC, methane alkalinity, besides the stable carbon isotopes of dissolved inorganic carbon (DIC). Microsensors were applied to analyze steep gradients of oxygen, sulphide and sulphate. Pore water profiles are evaluated in terms of process rates and associated element fluxes using the PROFILE software (Berg et al., 1998, L&O). Gross and net anaerobic mineralization rates were additionally obtained from core incubations with 35S. Steep gradients in DIC are associated with a strong enrichment of the light stable isotope resulting in the Gotland basin from oxidized OM. Element fluxes across the sediment-water interface are compared with literature data and show for the Baltic Sea a dependence from bottom water redox conditions, and sediment compositions and formation conditions (e.g., accumulation rates). DIC in the anoxic part of the water column in the Landsort Deep and the Gotland Deep show relatively similar isotope values, close to the bottom water value, but steep gradients towards heavier values above the pelagic redoxcline. Acknowledgements: The research was supported by Leibniz IO Warnemünde, DFG (Cruise RV MSM MERIAN 01), and MPG. Thanks to B. Schneider and F. Pollehne stimulating discussions, and S. Lage and A. Schipper for technical support.

  18. The dynamics of the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin assessed by parallel tag sequencing.

    PubMed

    Rodriguez-Mora, Maria J; Scranton, Mary I; Taylor, Gordon T; Chistoserdov, Andrei Y

    2015-09-01

    Massively parallel tag sequencing was applied to describe the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin. In total, 14 samples from the Cariaco Basin were collected over a period of eight years from two stations. A total of 244 357 unique bacterial V6 amplicons were sequenced. The total number of operational taxonomic units (OTUs) found in this study was 4692, with a range of 511-1491 OTUs per sample. Approximately 95% of the OTUs found in the redox transition zone and anoxic layers of Cariaco are represented by less than 50 amplicons suggesting that only about 5% of the bacterial OTUs are responsible for the bulk of the microbial processes in the basin redox transition and anoxic zones. The same dominant OTUs were observed across all eight years of sampling although periodic fluctuations in their proportion were apparent. No distinctive differences were observed between the bacterial communities from the redox transition and anoxic layers of the Cariaco Basin water column. The largest proportion of amplicons belongs to Gammaproteobacteria represented mostly by sulfide oxidizers, followed by Marine Group A (originally described as SAR406; Gordon and Giovannoni 1996), a group of uncultured bacteria hypothesized to be involved in metal reduction, and sulfate-reducing Deltaproteobacteria. Gammaproteobacteria, Deltaproteobacteria and Marine Group A make up 67-90% of all V6 amplicons sequenced in this study. This strongly suggests that the basin's microbial communities are actively involved in the sulfur-related metabolism and coupling of the sulfur and carbon cycles. According to detrended canonical correspondence analysis, ecological factors such as chemoautotrophy, nitrate and oxidized and reduced sulfur compounds influence the structuring and distribution of the Cariaco microbial communities. PMID:26209697

  19. Data Summary for the Near-Shore Sediment Characterization Task of the Clinch River Environmental Restoration Program

    SciTech Connect

    Levine, D.A.

    1994-01-01

    The purpose of the Near-Shore Sediment Characterization Task of the Clinch River Environmental Restoration Program (CR-ERP) was to quantify potential human health risks associated with Department of Energy (DOE)-related contamination of surface sediments in Watts Bar Reservoir (WBR). An estimated 700 Ci of {sup 137}Cs and 325 Ci of {sup 60}Co were released from White Oak Lake into the Clinch River between 1949 and 1992 (DOE, 1988). A number of previous studies have documented sediment contamination in the deep-water sediments but no study specifically targeted the near-shore environment, which has the most potential for exposure to humans.

  20. FACTORS IN THE DETERMINATION OF SELECTED TRACE ELEMENTS IN NEAR-SHORE U. S. WATERS OF LAKES SUPERIOR AND HURON

    EPA Science Inventory

    Determinations of total As, Cr, Cu, Fe, Mn, and Pb in acidified unfiltered water samples from 48 stations representing the near-shore U.S. waters of Lake Superior, Lake Huron, and selected incoming streams gave overall mean concentrations and standard deviations (microgram/L) of ...

  1. The presence and near-shore transport of human fecal pollution in Lake Michigan beaches

    USGS Publications Warehouse

    Molloy, S.L.; Liu, L.B.; Phanikumar, M.S.; Jenkins, T.M.; Wong, M.V.; Rose, J.B.; Whitman, R.L.; Shively, D.A.; Nevers, M.B.

    2005-01-01

    The Great Lakes are a source of water for municipal, agricultural and industrial use, and support significant recreation, commercial and sport fishing industries. Every year millions of people visit the 500 plus recreational beaches in the Great Lakes. An increasing public health risk has been suggested with increased evidence of fecal contamination at the shoreline. To investigate the transport and fate of fecal pollution at Great Lakes beaches and the health risk associated with swimming at these beaches, the near-shore waters of Mt Baldy Beach, Lake Michigan and Trail Creek, a tributary discharging into the lake were examined for fecal pollution indicators. A model of surf zone hydrodynamics coupled with a transport model with first-order inactivation of pollutant was used to understand the relative importance of different processes operating in the surf zone (e.g. physical versus biological processes). The Enterococcus human fecal pollution marker, which targets a putative virulence factor, the enterococcal surface protein (esp) in Enterococcus faecium, was detected in 2/28 samples (7%) from the tributaries draining into Lake Michigan and in 6/30 samples (20%) from Lake Michigan beaches. Preliminary analysis suggests that the majority of fecal indicator bactateria variation and water quality changes at the beaches can be explained by inputs from the influential stream and hydrometeorological conditions. Using modeling methods to predict impaired water quality may help reduce potential health threats to recreational visitors.

  2. Near-Shore and Off-Shore Habitat Use by Endangered Juvenile Lost River and Shortnose Suckers in Upper Klamath Lake, Oregon: 2006 Data Summary

    USGS Publications Warehouse

    Burdick, Summer M.; Wilkens, Alexander X.; VanderKooi, Scott P.

    2008-01-01

    INTRODUCTION Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris, listed as endangered in 1988 under the Endangered Species Act, have shown infrequent recruitment into adult populations in Upper Klamath Lake (NRC 2004). In an effort to understand the causes behind and provide management solutions to apparent recruitment failure, a number of studies have been conducted including several on larval and juvenile sucker habitat use. Near-shore areas in Upper Klamath Lake with emergent vegetation, especially those near the mouth of the Williamson River, were identified as important habitat for larval suckers (Cooperman and Markle 2000; Reiser et al. 2001). Terwilliger et al. (2004) characterized primary age-0 sucker habitat as near-shore areas in the southern portion of Upper Klamath Lake with gravel and cobble substrates. Reiser et al. (2001) provided some evidence that juvenile suckers use habitats with emergent vegetation, but nothing concerning the extent or timing of use. The U.S. Geological Survey (USGS) began investigating the importance of near-shore and off-shore habitats with and without emergent vegetation for juvenile suckers in 2000. We found substantial numbers of juvenile suckers using these habitats near the mouth of the Williamson River into late August (VanderKooi and Buelow 2003). The distribution and relative abundance of juvenile suckers showed high spatial variability throughout the summer for all species combined, Lost River suckers, and shortnose suckers (VanderKooi et al. 2006; Hendrixson et al. 2007a). Results from sampling near-shore areas in 2002 suggested juvenile sucker proximity to shoreline changes depending on the presence or absence of shoreline vegetation (VanderKooi et al. 2006), whereas in 2004 and 2005 results were equivocal (Hendrixson et al. 2007a, 2007b). Research by USGS of juvenile suckers in Upper Klamath Lake conducted since 2000 provides a valuable long-term data set which can be used to

  3. Survey of the state of the art in near-shore pipeline location and burial assessment

    SciTech Connect

    Wilkey, P.L. )

    1991-11-01

    Project's objective is to evaluate state-of-the-art methods for locating pipelines in shallow (less than 15 ft) water and for determining and monitoring their burial depths. The following recommendations are made on the research needed in three areas for locating near-shore, shallowly buried pipelines: (1) Sensors: The pipeline industry has selected the magnetic gradiometer array (GA) as a preferred sensor method. Other potential methods exist as backups. No additional research is recommended. (2) Remotely Operated Vehicles (ROVs): The Pipeline Research Committee is pursuing development of a prototype ROV is deliver the GA or other similar equipment to pipeline locations. (3) Phenomena: The data being collected from research on the phenomena affecting seabed conditions and the bathymetric data being collected along the Gulf Coast should be synthesized. This new effort should focus on identifying erosion-prone areas with respect to present and potential future pipeline locations. Technical approach is to get the broadest perspective on the concerns related to the determination of burial conditions for offshore pipelines, Argonne National Laboratory (ANL) contacted individuals and organizations from the gas and petroleum industries, hardware and software vendors, academicians, and representatives from the government. A literature survey yielded the names of persons within academia who are presently working on similar applications with sensors. In the oil and gas industry, individuals and organizations involved in the Pipeline Research Committee made extensive contributions to the review and also provided the names of meaningful contacts from among their vendors. Discussions were held with the various persons both on the telephone and face to face. Vendors provided background materials and overview presentations on their capabilities for ANL to review.

  4. Composition and Dynamics of the Black Sea Benthopelagic Plankton and Its Contribution to the Near-Shore Plankton Communities

    PubMed Central

    Vereshchaka, Alexander L.; Anokhina, Ludmila L.

    2014-01-01

    At a shallow (7 m) near-shore sampling site in the Black Sea we analyzed composition, abundance, and biomass of benthopelagic organisms and the contribution these animals make to the total plankton. The site was monitored across several years (1996–2001; 2006–2007) whilst for 1999–2000 the seasonal variations were analysed. A total of 321 samples from Golubaja Bay near Novorossiysk (44°34′31.04″ N, 37°58′45.11″ E) in 1996–2007 were taken with a Judey net. The benthopelagic fauna was represented by 69 taxa, a diversity comparable to similar shelf areas. The benthopelagic component played an important role in near-shore plankton communities in the Black Sea accounting for 50% of the total zooplankton biomass at night during all seasons. Abundance and biomass of the benthopelagic animals showed seasonal fluctuations, the highest biomass being recorded during winter (>75% of the total zooplankton biomass) and early spring due to large amphipods, whilst the highest abundances occur during late summer because of numerous young stages of various taxa. Amphipods, mysids, and decapods are the main contributors to the plankton biomass and abundances. Both night and daytime samples are strongly recommended for the adequate description of the near-shore plankton communities. PMID:24945680

  5. Coupling of fog and marine microbial content in the near-shore coastal environment

    NASA Astrophysics Data System (ADS)

    Dueker, M. E.; O'Mullan, G. D.; Weathers, K. C.; Juhl, A. R.; Uriarte, M.

    2011-09-01

    Microbes in the atmosphere (microbial aerosols) play an important role in climate and provide an ecological and biogeochemical connection between oceanic, atmospheric, and terrestrial environments. However, the sources and environmental factors controlling the concentration, diversity, transport, and viability of microbial aerosols are poorly understood. This study examined culturable microbial aerosols from a coastal environment in Maine (USA) and determined the effect of onshore wind speed and fog presence on deposition rate, source, and community composition. During fog events with low onshore winds (< 2 m s-1) the near-shore deposition of microbial aerosols (microbial fallout) decreased with increasing wind speeds, whereas microbial fallout rates under clear conditions and comparable low wind speeds showed no wind speed dependence. Mean aerosol particle size also increased with onshore wind speed when fog was present, indicating increased shoreward transport of larger aerosol particles. 16S rRNA sequencing of culturable ocean surface bacteria and microbial aerosols deposited onshore resulted in the detection of 31 bacterial genera, with 5 dominant genera (Vibrio, Bacillus, Pseudoalteromonas, Psychrobacter, Salinibacterium) making up 66% of all sequences. The microbial aerosol sequence library, as with libraries found in other coastal/marine aerosol studies, was dominated at the phylum level by Proteobacteria, with additional representation from Firmicutes, Actinobacteria and Bacteroidetes. Seventy-five percent of the viable microbial aerosols falling out under foggy conditions were most similar to GenBank-published sequences detected in marine environments. Using a 97% similarity cut-off, ocean surface and fog sequence libraries shared eight operational taxonomic units (OTU's) in total, three of which were the most dominant OTU's in the library, representing large fractions of the ocean (28%) and fog (21%) libraries. The fog and ocean surface libraries were

  6. Coupling of fog and marine microbial content in the near-shore coastal environment

    NASA Astrophysics Data System (ADS)

    Dueker, M. E.; O'Mullan, G. D.; Weathers, K. C.; Juhl, A. R.; Uriarte, M.

    2012-02-01

    Microbes in the atmosphere (microbial aerosols) play an important role in climate and provide an ecological and biogeochemical connection between oceanic, atmospheric, and terrestrial environments. However, the sources and environmental factors controlling the concentration, diversity, transport, and viability of microbial aerosols are poorly understood. This study examined culturable microbial aerosols from a coastal environment in Maine (USA) and determined the effect of onshore wind speed and fog presence on deposition rate, source, and community composition. During fog events with low onshore winds (<2 m s-1) the near-shore deposition of microbial aerosols (microbial fallout) decreased with increasing wind speeds, whereas microbial fallout rates under clear conditions and comparable low wind speeds showed no wind speed dependence. Mean aerosol particle size also increased with onshore wind speed when fog was present, indicating increased shoreward transport of larger aerosol particles. 16S rRNA sequencing of culturable ocean surface bacteria and microbial aerosols deposited onshore resulted in the detection of 31 bacterial genera, with 5 dominant genera (Vibrio, Bacillus, Pseudoalteromonas, Psychrobacter, Salinibacterium) making up 66 % of all sequences. The sequence library from microbial aerosol isolates, as with libraries found in other coastal/marine aerosol studies, was dominated at the phylum level by Proteobacteria, with additional representation from Firmicutes, Actinobacteria and Bacteroidetes. Seventy-five percent of the culturable microbial aerosols falling out under foggy conditions were most similar to GenBank-published sequences detected in marine environments. Using a 97 % similarity cut-off, sequence libraries from ocean surface and fog isolates shared eight operational taxonomic units (OTU's) in total, three of which were the most dominant OTU's in the library, representing large fractions of the ocean (28 %) and fog (21 %) libraries. The fog

  7. Sources of fecal indicator bacteria to groundwater, Malibu Lagoon and the near-shore ocean, Malibu, California, USA

    USGS Publications Warehouse

    Izbicki, John A.; Swarzenski, Peter W.; Burton, Carmen A.; Van De Werfhorst, Laurie; Holden, Patricia A.; Dubinsky, Eric A.

    2012-01-01

    Onsite wastewater treatment systems (OWTS) used to treat residential and commercial sewage near Malibu, California have been implicated as a possible source of fecal indicator bacteria (FIB) to Malibu Lagoon and the near-shore ocean. For this to occur, treated wastewater must first move through groundwater before discharging to the Lagoon or ocean. In July 2009 and April 2010, δ18O and δD data showed that some samples from water-table wells contained as much as 70% wastewater; at that time FIB concentrations in those samples were generally less than the detection limit of 1 Most Probable Number (MPN) per 100 milliliters (mL). In contrast, Malibu Lagoon had total coliform, Escherichia coli, and enterococci concentrations as high as 650,000, 130,000, and 5,500 MPN per 100 mL, respectively, and as many as 12% of samples from nearby ocean beaches exceeded the U.S. Environmental Protection Agency single sample enterococci standard for marine recreational water of 104 MPN per 100 mL. Human-associated Bacteroidales, an indicator of human-fecal contamination, were not detected in water from wells, Malibu Lagoon, or the near-shore ocean. Similarly, microarray (PhyloChip) data show Bacteroidales and Fimicutes Operational Taxanomic Units (OTUs) present in OWTS were largely absent in groundwater; in contrast, 50% of Bacteroidales and Fimicutes OTUs present in the near-shore ocean were also present in gull feces. Terminal-Restriction Length Fragment Polymorphism (T-RFLP) and phospholipid fatty acid (PLFA) data showed that microbial communities in groundwater were different and less abundant than communities in OWTS, Malibu Lagoon, or the near-shore ocean. However, organic compounds indicative of wastewater (such as fecal sterols, bisphenol-A and cosmetics) were present in groundwater having a high percentage of wastewater and were present in groundwater discharging to the ocean. FIB in the near-shore ocean varied with tides, ocean swells, and waves. Movement of water from

  8. Identifying rhodamine dye plume sources in near-shore oceanic environments by integration of chemical and visual sensors.

    PubMed

    Tian, Yu; Kang, Xiaodong; Li, Yunyi; Li, Wei; Zhang, Aiqun; Yu, Jiangchen; Li, Yiping

    2013-01-01

    This article presents a strategy for identifying the source location of a chemical plume in near-shore oceanic environments where the plume is developed under the influence of turbulence, tides and waves. This strategy includes two modules: source declaration (or identification) and source verification embedded in a subsumption architecture. Algorithms for source identification are derived from the moth-inspired plume tracing strategies based on a chemical sensor. The in-water test missions, conducted in November 2002 at San Clemente Island (California, USA) in June 2003 in Duck (North Carolina, USA) and in October 2010 at Dalian Bay (China), successfully identified the source locations after autonomous underwater vehicles tracked the rhodamine dye plumes with a significant meander over 100 meters. The objective of the verification module is to verify the declared plume source using a visual sensor. Because images taken in near shore oceanic environments are very vague and colors in the images are not well-defined, we adopt a fuzzy color extractor to segment the color components and recognize the chemical plume and its source by measuring color similarity. The source verification module is tested by images taken during the CPT missions. PMID:23507823

  9. Environmental Relationship of Benthic Fauna in the Near Shore Waters off Gulf of Kutch, North West Coast of India

    NASA Astrophysics Data System (ADS)

    Sanagoudra, S. N.; Bhat, U. G.

    2014-12-01

    The present study was undertaken for a period of two years from December 2010 to May 2012.Studying the benthos of Gulf of Kutch near shore waters is also useful in understanding changes in biological diversity of Gujarat coast. The use of benthos in aquatic ecological research is especially effective in assessing long term changes and detecting input from diffuse sources. The benthos reflects the effects organic enrichment by responding through detectable changes in population dynamics on a time scale of months to years. This is in contrast to plankton which shows a more immediate change to point sources with no long term consequences to the populations (Gray et al 1992). Benthoses were collected from 6 stations on regular basis and were identified. Altogether 60 species belonging to 39 families were identified and placed taxonomically during the course of investigation with sediment samples. Benthic environmental relationship species were observed and recorded. Our studies of monthly comparisons have become an interesting and popular approach in ecology and environmental relationships in the past a number of studies have been conducted on the ecology of macro benthic populations of Gulf of Kutch near shore. My research helps in Gulf of Kutch of the west coast of India has become an important economic asset of the country serving commercial navigation and the fishing sector with environmental relation of benthos in the Gulf of Kutch Gujarat. India.

  10. Molecular typing of Escherichia coli strains associated with threatened sea ducks and near-shore marine habitats of southwest Alaska

    USGS Publications Warehouse

    Schamber, Jason L.

    2011-01-01

    In Alaska, sea ducks winter in coastal habitats at remote, non-industrialized areas, as well as in proximity to human communities and industrial activity. We evaluated prevalence and characteristics of Escherichia coli strains in faecal samples of Steller's eiders (Polysticta stelleri; n = 122) and harlequin ducks (Histrionicus histrionicus; n = 21) at an industrialized site and Steller's eiders (n = 48) at a reference site, and compared these strains with those isolated from water samples from near-shore habitats of ducks. The overall prevalence of E. coli was 16% and 67% in Steller's eiders and harlequin ducks, respectively, at the industrialized study site, and 2% in Steller's eiders at the reference site. Based on O and H antigen subtyping and genetic characterization by enterobacterial repetitive intergenic consensus polymerase chain reaction and pulsed-field gel electrophoresis, we found evidence of avian pathogenic E. coli (APEC) strains associated with both species and detected E. coli strains carrying virulence genes associated with mammals in harlequin ducks. Steller's eiders that carried APEC had lower serum total protein and albumin concentrations, providing further evidence of pathogenicity. The genetic profile of two E. coli strains from water matched an isolate from a Steller's eider providing evidence of transmission between near-shore habitats and birds.

  11. Identifying Rhodamine Dye Plume Sources in Near-Shore Oceanic Environments by Integration of Chemical and Visual Sensors

    PubMed Central

    Tian, Yu; Kang, Xiaodong; Li, Yunyi; Li, Wei; Zhang, Aiqun; Yu, Jiangchen; Li, Yiping

    2013-01-01

    This article presents a strategy for identifying the source location of a chemical plume in near-shore oceanic environments where the plume is developed under the influence of turbulence, tides and waves. This strategy includes two modules: source declaration (or identification) and source verification embedded in a subsumption architecture. Algorithms for source identification are derived from the moth-inspired plume tracing strategies based on a chemical sensor. The in-water test missions, conducted in November 2002 at San Clemente Island (California, USA) in June 2003 in Duck (North Carolina, USA) and in October 2010 at Dalian Bay (China), successfully identified the source locations after autonomous underwater vehicles tracked the rhodamine dye plumes with a significant meander over 100 meters. The objective of the verification module is to verify the declared plume source using a visual sensor. Because images taken in near shore oceanic environments are very vague and colors in the images are not well-defined, we adopt a fuzzy color extractor to segment the color components and recognize the chemical plume and its source by measuring color similarity. The source verification module is tested by images taken during the CPT missions. PMID:23507823

  12. Environmental Conditions in a Carpathian Deep Sea Basin During the Period Preceding Oceanic Anoxic Event 2 - A Case Study from the Skole Nappe

    NASA Astrophysics Data System (ADS)

    Bąk, Krzysztof; Bąk, Marta; Górny, Zbigniew; Wolska, Anna

    2015-01-01

    Hemipelagic green clayey shales and thin muddy turbidites accumulated in a deep sea environment below the CCD in the Skole Basin, a part of the Outer Carpathian realm, during the Middle Cenomanian. The hemipelagites contain numerous radiolarians, associated with deep-water agglutinated foraminifera. These sediments accumulated under mesotrophic conditions with limited oxygen concentration. Short-term periodic anoxia also occurred during that time. Muddy turbidity currents caused deposition of siliciclastic and biogenic material, including calcareous foramini-fers and numerous sponge spicules. The preservation and diversity of the spicules suggests that they originate from disarticulation of moderately diversified sponge assemblages, which lived predominantly in the neritic-bathyal zone. Analyses of radiolarian ecological groups and pellets reflect the water column properties during the sedimentation of green shales. At that time, surface and also intermediate waters were oxygenated enough and sufficiently rich in nutri-ents to enable plankton production. Numerous, uncompacted pellets with nearly pristine radiolarian skeletons inside show that pelletization was the main factor of radiolarian flux into the deep basin floor. Partly dissolved skeletons indicate that waters in the Skole Basin were undersaturated in relation to silica content. Oxygen content might have been depleted in the deeper part of the water column causing periodic anoxic conditions which prevent rapid bacterial degra-dation of the pellets during their fall to the sea floor.

  13. Diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes in the MgCl2-dominated deep hypersaline anoxic basin discovery.

    PubMed

    van der Wielen, Paul W J J

    2006-06-01

    Partial sequences of the form I (cbbL) and form II (cbbM) of the ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) large subunit genes were obtained from the brine and interface of the MgCl2-dominated deep hypersaline anoxic basin Discovery. CbbL and cbbM genes were found in both brine and interface of the Discovery Basin but were absent in the overlying seawater. The diversity of both genes in the brine and interface was low, which might caused by the extreme saline conditions in Discovery of approximately 5 M MgCl2. None of the retrieved sequences were closely related to sequences deposited in the GenBank database. A phylogenetic analysis demonstrated that the cbbL sequences were affiliated with a Thiobacillus sp. or with one of the RuBisCO genes from Hydrogenovibrio marinus. The cbbM sequences clustered with thiobacilli or formed a new group with no close relatives. The results implicate that bacteria with the potential for carbon dioxide fixation and chemoautotrophy are present in the Discovery Basin. This is the first report demonstrating that RuBisCO genes are present under hypersaline conditions of 5 M MgCl2. PMID:16734797

  14. Distribution and source of heavy metals in the surface sediments from the near-shore area, north Jiangsu Province, China.

    PubMed

    Xu, Gang; Liu, Jian; Pei, Shaofeng; Kong, Xianghuai; Hu, Gang

    2014-06-15

    Samples of surface sediment and vibrocore were collected in the near-shore area of north Jiangsu Province for grain size, elements, (210)Pbexcess and (137)Cs analyses. In our study area, the diversity of metal concentration was controlled not by the grain size, but by the source. The element content of the old Yellow River Delta was used as baseline for our study area. Geoaccumulation indexes indicate that no station was polluted by Cu, Pb, Zn and As, but the Igeo values of As were close to zero in some stations. Slight pollution caused by Cd was observed in some stations. Correlation and enrichment factors suggest that Cu, Pb and Zn are lithogenic in origin, while As and Cd are mixed in origin. Especially, in some polluted stations Cd was obviously anthropogenic in origin. PMID:24766897

  15. A Conceptual Site Model for Nature and Extent of Contamination in a Riparian-Near Shore Area - 12410

    SciTech Connect

    Morgans, Donna; Lowe, John; McCarthy, Chris; Aly, Alaa

    2012-07-01

    The 100-K decision area is located along the Columbia River and includes source Operable Units (OUs), a groundwater OU, and the adjacent surface water, saturated sediment and aquatic biota. A conceptual site model (CSM) has been developed to evaluate concentrations of non-radiological substances and radionuclides detected in soil, water and sediments in a riparian near-shore area along the Columbia River. The CSM is used to determine if potential transport pathways exist to these media from Hanford Site sources by incorporating information from the physical system, surface hydrology, subsurface hydrogeology, analytical results, and ecological evaluation into the model. Six contaminants of ecological concern, mostly metals and non-radiological inorganics, have been identified in riparian and near-shore media. With few exceptions (notably chromium and hexavalent chromium), there are ambient sources for these constituents in soil, sediment and water that are unrelated to the Hanford Site. While the CSM documented analytical and biological conditions, this paper presents results focused on analytical measurements to document the potential for these contaminants to be related to a release from the Hanford Site. The purpose for preparing this CSM was to address, on a reactor decision area basis, the potential for Hanford Site contaminants in soil or groundwater to migrate to riparian or near-shore areas at concentrations that could be of concern for ecological receptors. This CSM supplements the analysis of River Corridor-wide ecological risks presented in the ecological risk assessment of the RCBRA. The RCBRA identified on a site-wide basis some contaminants of ecological concern that warranted further evaluation. Based on the results of the further evaluation contained in this CSM, with the exception of hexavalent chromium, detected concentrations of contaminants in riparian or near-shore media are not reliably detectable at levels of ecological concern, or are not

  16. A new species of Near-shore Marine Goby (Pisces: Gobiidae: Nesogobius) from Kangaroo Island, Australia.

    PubMed

    Hammer, Michael P; Hoese, Douglass F; Bertozzi, Terry

    2015-01-01

    Nesogobius is one of two goby genera with all species wholly restricted to temperate Australian waters. Described here is a new member of the genus discovered during near-shore marine and estuarine fish sampling along the central southern Australian coastline. The tiger sandgoby Nesogobius tigrinus sp. nov. is distinguished from other congeners by a combination of colouration including four prominent vertical black bars on males; morphological characters involving body scales (large), head scales (naked), body depth (slender) and gill opening (wide); meristic counts including a lack of second dorsal and anal fin spines; and mitochondrial DNA sequence divergence. The species appears to be a narrow range endemic, restricted to specific sub-tidal habitat in the unique sheltered embayments of northeast Kangaroo Island. This study forms part of ongoing investigations to more fully describe the biodiversity and conservation requirements of the regional ichthyofauna. PMID:26701487

  17. Does a strong pycnocline impact organic-matter preservation and accumulation in an anoxic setting? The case of the Orca Basin, Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Tribovillard, Nicolas; Bout-Roumazeilles, Viviane; Sionneau, Thomas; Serrano, Jean Carlos Montero; Riboulleau, Armelle; Baudin, François

    2009-01-01

    The Orca Basin (an intraslope depression located in the Gulf of Mexico) collects sedimentary particles of terrestrial origin (clastic and organic particles mainly supplied by the Mississippi River) and of marine origin (biogenic productivity). The basin is partly filled with dense brines leached from salt diapirs cropping out on the sea floor, and is permanently stratified. A strong pycnocline induces anoxic bottom conditions, expectedly favorable to organic matter (OM) preservation. Here, we report on OM in the upper 750 cm below sea floor of Core MD02-2552 (Holocene). The organic content is dominated by marine-derived amorphous OM. The organic assemblage is unexpectedly degraded to some extent, which may be accounted for by a relatively long residence time of organic particles at the halocline-pycnocline at ˜2240 m. Thus the organic particles are temporarily trapped and kept in contact with the dissolved oxygen-rich overlying water mass. Lastly, the land-derived organic fraction shows co-variations with the land-derived clay mineral supply.

  18. Comparative studies of pelagic microbial methane oxidation within two anoxic basins of the central Baltic Sea (Gotland Deep and Landsort Deep)

    NASA Astrophysics Data System (ADS)

    Jakobs, G.; Rehder, G.; Jost, G.; Kießlich, K.; Labrenz, M.; Schmale, O.

    2013-07-01

    Pelagic methane oxidation was investigated in dependence on differing environmental conditions within the redox zone of the Gotland Deep (GD) and Landsort Deep (LD), central Baltic Sea. The redox zone of both deeps, which indicates the transition between oxic and anoxic conditions, was characterized by a pronounced methane concentration gradient between the deep water (GD: 1233 nM, LD: 2935 nM) and the surface water (GD and LD < 10 nM), together with a 13C CH4 enrichment (δ13C CH4 deep water: GD -84‰, LD -71‰ ; redox zone: GD -60‰, LD -20‰ ; δ13C CH4 vs. Vienna Pee Dee Belemnite standard), clearly indicating microbial methane consumption in that specific depth interval. Expression analysis of the methane monooxygenase identified one active type I methanotrophic bacterium in both redox zones. In contrast, the turnover of methane within the redox zones showed strong differences between the two basins (GD: max. 0.12 nM d-1 and LD: max. 0.61 nM d-1), with a four times higher turnover rate constant (k) in the LD (GD: 0.0022 d-1, LD: 0.0079 d-1). Vertical mixing rates for both deeps were calculated on the base of the methane concentration profile and the consumption of methane in the redox zone (GD: 2.5 × 10-6 m2 s-1 LD: 1.6 × 10-5 m2 s-1). Our study identified vertical transport of methane from the deep water body towards the redox zone as well as differing hydrographic conditions within the oxic/anoxic transition zone of these deeps as major factors that determine the pelagic methane oxidation.

  19. Generation of multivariate near shore extreme wave conditions based on an extreme value copula for offshore boundary conditions.

    NASA Astrophysics Data System (ADS)

    Leyssen, Gert; Mercelis, Peter; De Schoesitter, Philippe; Blanckaert, Joris

    2013-04-01

    Near shore extreme wave conditions, used as input for numerical wave agitation simulations and for the dimensioning of coastal defense structures, need to be determined at a harbour entrance situated at the French North Sea coast. To obtain significant wave heights, the numerical wave model SWAN has been used. A multivariate approach was used to account for the joint probabilities. Considered variables are: wind velocity and direction, water level and significant offshore wave height and wave period. In a first step a univariate extreme value distribution has been determined for the main variables. By means of a technique based on the mean excess function, an appropriate member of the GPD is selected. An optimal threshold for peak over threshold selection is determined by maximum likelihood optimization. Next, the joint dependency structure for the primary random variables is modeled by an extreme value copula. Eventually the multivariate domain of variables was stratified in different classes, each of which representing a combination of variable quantiles with a joint probability, which are used for model simulation. The main variable is the wind velocity, as in the area of concern extreme wave conditions are wind driven. The analysis is repeated for 9 different wind directions. The secondary variable is water level. In shallow waters extreme waves will be directly affected by water depth. Hence the joint probability of occurrence for water level and wave height is of major importance for design of coastal defense structures. Wind velocity and water levels are only dependent for some wind directions (wind induced setup). Dependent directions are detected using a Kendall and Spearman test and appeared to be those with the longest fetch. For these directions, wind velocity and water level extreme value distributions are multivariately linked through a Gumbel Copula. These distributions are stratified into classes of which the frequency of occurrence can be

  20. Landsat-8 imagery to estimate clarity in near-shore coastal waters: Feasibility study - Chabahar Bay, Iran

    NASA Astrophysics Data System (ADS)

    Kabiri, Keivan; Moradi, Masoud

    2016-08-01

    This study examined the advantages of incorporating the new band of Landsat-8 OLI imagery (band 1: Coastal/Aerosol, 435-451 nm) to a model for estimation of Secchi disk depth (SDD) values (as an indicator for transparency) in near-shore coastal waters using multispectral bands. In doing so, Chabahar Bay in the southern part of Iran (north of Gulf of Oman) was selected as the study area. Two approximately four-hour in-situ observations (including 48 and 56 field measured SDD values for each date respectively) were performed in the study area using Secchi disk; this was designed to start about two hours before and end about two hours after the time of satellite overpasses. Thereafter, a model was formed for estimation of SDD values based on the terms including all possible linear and mutual ratio values of Coastal/Aerosol (B1), Blue (B2), Green (B3), and Red bands (B4). In the first step, the correlation between reflectance/ratio reflectance values of these bands and Ln(SDD) values were calculated to indicate higher correlated bands/band ratios with the first field measured SDD values. Consequently, 17 combinations of highest correlated bands/band ratios were selected to estimate SDD values. In this regard, 32 points among the 48 field observations were selected to determine unknown coefficients of models using a multiple linear regression, and the rest 16 points were designated for accuracy assessment the results. Eventually, the measured SDD values in second field observations were utilized for validating the results. Final results demonstrated that combination of linear terms including B1, B2 and B3 bands and band ratio terms including ratio reflectance values of B4/B3, B3/B1, and B2/B1 has led to obtain the highest accuracy (R2=0.866 and RMSE=0.919, SVM feature weight=4.294). This was in agreement with the results obtained from the second observations. Finally, by applying the entire 104 field observed SDD values, the model in form of SDD=0.077exp(1.209RB1

  1. Distributions of C22-C30 even-carbon-number n-alkanes in Ocean Anoxic Event 1 samples from the Basque-Cantabrian Basin.

    PubMed

    Chaler, R; Dorronsoro, C; Grimalt, J O; Agirrezabala, L M; Fernández-Mendiola, P A; García-Mondejar, J; Gómez-Pérez, I; López-Horgue, M

    2005-05-01

    The Ocean Anoxic Event 1 (OAE-1) in central sites of the Basque-Cantabrian Basin exhibits very reducing depositional conditions of sedimentation. These sedimentation events have left a distinct mixture of hydrocarbons that are represented by C22-C30 n-alkanes with a predominance of the even-carbon-number homologues, high relative proportions of squalane and C16-C24 n-alkylcyclopentanes predominated by n-undecyl-, n-tridecyl- and n-pentadecylcyclopentane. Other minor compounds encompass a series of C18-C21 n-alkylcyclohexanes and C18-C24 dimethyl n-alkylcyclohexanes maximized by the even-carbon-number homologues as well as iso- and anteiso-alkanes. This unusual distribution of n-alkanes in this environment provides a new case for comparison with previously reported hypersaline and phosphorite sedimentary deposits where the occurrence of similar n-alkane distributions was reported. In the present case, these major n-alkanes and squalane are indicative of transformation under strong reducing conditions. In contrast, the occurrence of the alkylcyclopentanes, irrespective of the presence of even-carbon-number n-alkanes or squalane, suggests that reductive cyclization of fatty acids is less dependent on strong reducing conditions. PMID:15776255

  2. Near-shore Antarctic pH variability has implications for the design of ocean acidification experiments

    PubMed Central

    Kapsenberg, Lydia; Kelley, Amanda L.; Shaw, Emily C.; Martz, Todd R.; Hofmann, Gretchen E.

    2015-01-01

    Understanding how declining seawater pH caused by anthropogenic carbon emissions, or ocean acidification, impacts Southern Ocean biota is limited by a paucity of pH time-series. Here, we present the first high-frequency in-situ pH time-series in near-shore Antarctica from spring to winter under annual sea ice. Observations from autonomous pH sensors revealed a seasonal increase of 0.3 pH units. The summer season was marked by an increase in temporal pH variability relative to spring and early winter, matching coastal pH variability observed at lower latitudes. Using our data, simulations of ocean acidification show a future period of deleterious wintertime pH levels potentially expanding to 7–11 months annually by 2100. Given the presence of (sub)seasonal pH variability, Antarctica marine species have an existing physiological tolerance of temporal pH change that may influence adaptation to future acidification. Yet, pH-induced ecosystem changes remain difficult to characterize in the absence of sufficient physiological data on present-day tolerances. It is therefore essential to incorporate natural and projected temporal pH variability in the design of experiments intended to study ocean acidification biology.

  3. Detection of pharmaceuticals and personal care products (PPCPs) in near-shore habitats of southern Lake Michigan.

    PubMed

    Ferguson, Patrick J; Bernot, Melody J; Doll, Jason C; Lauer, Thomas E

    2013-08-01

    Pharmaceuticals and personal care products (PPCPs) have been documented throughout the United States freshwaters but research has focused largely on lotic systems. Because PPCPs are designed to have a physiological effect, it is likely that they may also influence aquatic organisms. Thus, PPCPs may negatively impact aquatic ecosystems. The objectives of this research were to quantify PPCP abundance in near-shore habitats of southern Lake Michigan and identify factors related to PPCP abundance. Stratified sampling was conducted seasonally at four southern Lake Michigan sites. All sites and depths had measurable PPCP concentrations, with mean individual compound concentrations of acetaminophen (5.36 ng/L), caffeine (31.0 ng/L), carbamazepine (2.23 ng/L), cotinine (4.03 ng/L), gemfibrozil (7.03 ng/L), ibuprofen (7.88 ng/L), lincomycin (4.28 ng/L), naproxen (6.32 ng/L), paraxanthine (1,7-dimethylxanthine; 46.2 ng/L), sulfadimethoxine (0.94 ng/L), sulfamerazine (0.92 ng/L), sulfamethazine (0.92 ng/L), sulfamethoxazole (26.0 ng/L), sulfathiazole (0.92 ng/L), triclocarban (5.72 ng/L), trimethoprim (5.15 ng/L), and tylosin (3.75 ng/L). Concentrations of PPCPs varied significantly among sampling times and locations (river mouth vs offshore), with statistical interactions between the main effects of site and time as well as time and location. Concentrations of PPCPs did not differ with site or depth. Temperature, total carbon, total dissolved solids, dissolved oxygen, and ammonium concentrations were related to total pharmaceutical concentrations. These data indicate that PPCPs are ubiquitous and persistent in southern Lake Michigan, potentially posing harmful effects to aquatic organisms. PMID:23648448

  4. Lacustrine anoxic event 1 (LAE1) recorded by rock magnetism of Unit 1 of Qingshankou Formation, Late Cretaceous Songliao Basin in Northeast China

    NASA Astrophysics Data System (ADS)

    Li, H.; Zhang, S.; Zhao, K.; Wu, H.; Yang, T.

    2011-12-01

    Songliao Basin, located in northeastern China, is one of the biggest cretaceous lakes in Asia, with most completely developed cretaceous stratigraphy. Therefore, it is a key area to study cretaceous palaeontology evolution and paleoenvironmental changes. Especially, anoxic events and marine transgressional events have been the research focuses for a long time. The lacustrine anoxic event 1 (LAE1) has been reported to happen in Songliao Basin during the deposition of unit 1 of Qingshankou Formation (K2qn1). In this study, K2qn1 was sampled from China Cretaceous Continental Scientific Drilling-Songke Ι (CCSD-SK-Ι) south borehole. The K2qn1, from 1700 m to 1782.8 m in the well log, mainly consists black shale and mudstone. LAE1 is the section from 1750 m to 1775 m. Detailed rock magnetic measurements were conducted, including magnetic susceptibility (χ) and susceptibility of anhysteretic remanence (χARM), saturation isothermal remanence (SIRM), S-ratio (IRM-100mT/SIRM), medial destroyed field of ARM (MDFARM), and temperature-dependence of magnetic susceptibilities (χ/T curves), acquiring curves and reverse demagnetic curves of IRM and thermal demagnetization of ARM and SIRM and Lowrie experiment for selected samples. X-ray diffraction (XRD) was also carried out for selected samples. The acquiring curves and reverse demagnetic curves of typical specimens and the thermal demagnetization of ARM and SIRM and the Lowrie experiment confirm that the major remanence-carrier is soft magnetite. Results of χ/T curves indicate that: for some specimens, pyrite exists (Li and Zhang, 2005); for most specimens, their χ decreases slowly during heating, suggesting a dominant contribution from paramagnetic minerals. Results of XRD suggest that these paramagnetic minerals may be feldspar, kaolinite and pyrite. So paramagnetic clay minerals control χ of K2qn1; and more clay minerals may induce higher natural gamma ray (GR). Therefore, χ and GR should be positive. On the contrary

  5. Onset and demise of Cretaceous oceanic anoxic events: The coupling of surface and bottom oceanic processes in two pelagic basins of the western Tethys

    NASA Astrophysics Data System (ADS)

    Gambacorta, G.; Bersezio, R.; Weissert, H.; Erba, E.

    2016-06-01

    The upper Albian-lower Turonian pelagic successions of the Tethys record processes acting during the onset, core, and recovery from perturbed conditions across oceanic anoxic event (OAE) 1d, OAE 2, and the mid-Cenomanian event I (MCE I) relative to intervening intervals. Five sections from Umbria-Marche and Belluno Basins (Italy) were analyzed at high resolution to assess processes in surface and deep waters. Recurrent facies stacking patterns (SP) and their associations record periods of bottom current activity coupled with surface changes in trophic level. Climate changes appear to have been influential on deep circulation dynamics. Under greenhouse conditions, vigorous bottom currents were arguably induced by warm and dense saline deep waters originated on tropical shelves in the Tethys and/or proto-Atlantic Ocean. Tractive facies postdating intermittent anoxia during OAE 1d and in the interval bracketed by MCE I and OAE 2 are indicative of feeble bottom currents, though capable of disrupting stratification and replenish deep water with oxygen. The major warming at the onset of OAE 2 might have enhanced the formation of warm salty waters, possibly producing local hiatuses at the base of the Bonarelli Level and winnowing at the seafloor. Hiatuses detected at the top of the Bonarelli Level possibly resulted from most effective bottom currents during the early Turonian thermal maximum. Times of minimal sediment displacement correlate with cooler climatic conditions and testify a different mechanism of deep water formation, as further suggested by a color change to reddish lithologies of the post-OAE 1d and post-OAE 2 intervals.

  6. Use of radon-222 to evaluate the influence of groundwater discharge on fecal indicator bacteria concentrations in the near-shore ocean, Malibu, California

    NASA Astrophysics Data System (ADS)

    Izbicki, J. A.; Burton, C.; Swarzenski, P. W.

    2011-12-01

    To protect beach-goers from waterborne disease, California requires water-quality monitoring for fecal indicator bacteria (FIB) at beaches having more than 50,000 visits annually. The source(s) of FIB in ocean beaches in excess of marine recreational water standards is often not known, or may be incorrectly identified. Onsite wastewater treatment systems (OWTS) used to treat residential and commercial sewage have been implicated by regulatory agencies as a possible source of FIB to recreational ocean beaches, near Malibu, California. For this to occur, treated wastewater must first move through groundwater prior to discharge at the ocean. Groundwater discharge to the ocean near Malibu Lagoon (the estuary of Malibu Creek) is complicated by seasonally changing water levels in the lagoon. The lagoon is isolated from the ocean by a sand berm that develops across the mouth of the lagoon during the dry season. Higher water levels in the lagoon during the dry season, and lower water-levels during the wet season, cause seasonal changes in the direction of groundwater flow and the magnitude of discharge from the adjacent small (3,400 hectare), alluvial aquifer. Radon-222, an indicator of groundwater discharge, was measured in Malibu Lagoon, in the near-shore ocean adjacent to the lagoon, and in the near-shore ocean adjacent to unsewered residential development to determine the timing and magnitude of groundwater discharge. During the dry season, when the berm of the lagoon was closed and the lagoon was isolated from the ocean, radon-222 concentrations in the near-shore ocean during low tide increased as water discharged from the lagoon through the berm. Enterococcus concentrations in the near-shore ocean increased to almost 600 Most Probable Number (MPN) per 100 milliliter at this time. Radon-222 concentrations also increased at low tide as groundwater discharged to the ocean from the adjacent alluvial aquifer underlying the unsewered residential development, but there was

  7. A preliminary study of iron isotope fractionation in marine invertebrates (chitons, Mollusca) in near-shore environments

    NASA Astrophysics Data System (ADS)

    Emmanuel, S.; Schuessler, J. A.; Vinther, J.; Matthews, A.; von Blanckenburg, F.

    2014-10-01

    tidal regions. Our preliminary results suggest that while chitons are not simple recorders of the ambient seawater Fe isotopic signature, Fe isotopes provide valuable information concerning Fe biogeochemical cycling in near-shore environments, and may potentially be used to probe sources of Fe recorded in different organisms.

  8. Identification of temporal and small-scale spatial variations of phosphate concentration in the near-shore groundwater of an oligotrophic lake

    NASA Astrophysics Data System (ADS)

    Pöschke, Franziska; Schlichting, Hendrik; Lewandowski, Jörg

    2016-04-01

    Lake Stechlin is one of the last oligotrophic lakes in the German North-Eastern Lake District. In recent years there was some worry over a small but continuous increase of phosphate concentrations in the open water body. The reasons remain unclear. Since the lake obtains its water only from groundwater and precipitation there is the assumption that the former can be a significant source of phosphate inputs into the lake. In the present study, three different groundwater sampling settings on different scales in time and space were used to investigate the phosphate concentration in the near-shore groundwater. A multi-level sampling grid of twelve samplers and 60 sampling ports was installed to study the temporal small-scale fluctuations of P concentration in the groundwater and the interstitial water. Furthermore, a one-time sampling campaign of shallow near-shore groundwater was conducted every 500 m along the lake shore. Additionally, nests of permanent groundwater wells were sampled monthly for one year to identify concentration patterns in the deeper aquifer. The results indicate a large spatial and small temporal heterogeneity of P concentrations. The range of P concentration is < 0.01 mg/l up to 0.2 mg/l. There was no significant increase of P concentrations downstream of the small near-shore village Neuglobsow. Since the groundwater catchment belongs since 1938 to a natural protected area other anthropogenic impacts are quite unlikely. Hence, the main source for phosphate is probably the decomposition of naturally present organic material under anaerobic and warm conditions.

  9. Molecular typing of Escherichia coli strains associated with threatened sea ducks and near-shore marine habitats of south-west Alaska.

    PubMed

    Hollmén, Tuula E; Debroy, Chitrita; Flint, Paul L; Safine, David E; Schamber, Jason L; Riddle, Ann E; Trust, Kimberly A

    2011-04-01

    In Alaska, sea ducks winter in coastal habitats at remote, non-industrialized areas, as well as in proximity to human communities and industrial activity. We evaluated prevalence and characteristics of Escherichia coli strains in faecal samples of Steller's eiders (Polysticta stelleri; n = 122) and harlequin ducks (Histrionicus histrionicus; n = 21) at an industrialized site and Steller's eiders (n = 48) at a reference site, and compared these strains with those isolated from water samples from near-shore habitats of ducks. The overall prevalence of E. coli was 16% and 67% in Steller's eiders and harlequin ducks, respectively, at the industrialized study site, and 2% in Steller's eiders at the reference site. Based on O and H antigen subtyping and genetic characterization by enterobacterial repetitive intergenic consensus polymerase chain reaction and pulsed-field gel electrophoresis, we found evidence of avian pathogenic E. coli (APEC) strains associated with both species and detected E. coli strains carrying virulence genes associated with mammals in harlequin ducks. Steller's eiders that carried APEC had lower serum total protein and albumin concentrations, providing further evidence of pathogenicity. The genetic profile of two E. coli strains from water matched an isolate from a Steller's eider providing evidence of transmission between near-shore habitats and birds. PMID:23761259

  10. Molecular typing of Escherichia coli strains associated with threatened sea ducks and near-shore marine habitats of south-west Alaska

    USGS Publications Warehouse

    Hollmén, Tuula E.; Debroy, C.; Flint, P.L.; Safine, D.E.; Schamber, J.L.; Riddle, A.E.; Trust, K.A.

    2011-01-01

    In Alaska, sea ducks winter in coastal habitats at remote, non-industrialized areas, as well as in proximity to human communities and industrial activity. We evaluated prevalence and characteristics of Escherichia coli strains in faecal samples of Steller's eiders (Polysticta stelleri; n=122) and harlequin ducks (Histrionicus histrionicus; n=21) at an industrialized site and Steller's eiders (n=48) at a reference site, and compared these strains with those isolated from water samples from near-shore habitats of ducks. The overall prevalence of E. coli was 16% and 67% in Steller's eiders and harlequin ducks, respectively, at the industrialized study site, and 2% in Steller's eiders at the reference site. Based on O and H antigen subtyping and genetic characterization by enterobacterial repetitive intergenic consensus polymerase chain reaction and pulsed-field gel electrophoresis, we found evidence of avian pathogenic E. coli (APEC) strains associated with both species and detected E. coli strains carrying virulence genes associated with mammals in harlequin ducks. Steller's eiders that carried APEC had lower serum total protein and albumin concentrations, providing further evidence of pathogenicity. The genetic profile of two E. coli strains from water matched an isolate from a Steller's eider providing evidence of transmission between near-shore habitats and birds. ?? 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

  11. Dioctyl sulfosuccinate analysis in near-shore Gulf of Mexico water by direct-injection liquid chromatography-tandem mass spectrometry.

    PubMed

    Mathew, Johnson; Schroeder, David L; Zintek, Lawrence B; Schupp, Caitlin R; Kosempa, Michael G; Zachary, Adam M; Schupp, George C; Wesolowski, Dennis J

    2012-03-30

    Dioctyl sulfosuccinate (DOSS) was a major component of the dispersants most used in the 2010 Deepwater Horizon Oil Spill incident response. This analytical method quantifies salt water DOSS concentrations to a reporting limit of 20 μg/L, which was below the United States Environmental Protection Agency's (U.S. EPA) 40 μg/L DOSS Aquatic Life Benchmark. DOSS in Gulf of Mexico water samples were analyzed by direct-injection reversed-phase liquid chromatography-tandem mass spectrometry (LC-MS/MS). Sample preparation with 50% acetonitrile (ACN) enabled quantitative transfer of DOSS and increased DOSS response 20-fold by reducing aggregation. This increased sensitivity enabled the detection of a confirmatory transition over the calibration range of 10-200 μg/L. U.S. EPA Region 5 and Region 6 laboratories analyzed hundreds of near-shore surface Gulf of Mexico water samples, none contained more than the 20 ppb reporting limit. The matrix spike DOSS/deuterated surrogate (DOSS-D34) correlation of determination varied with mobile phase modifier (ammonium formate R(2)=0.95 and formic acid R(2)=0.27). Using ammonium formate, DOSS-D34 accurately measured DOSS matrix effect. The near-shore sodium concentrations varied more than 10,000-fold, but were not strongly correlated with DOSS recovery. DOSS detection by LC-MS/MS enabled rapid analysis which was valuable in guiding incident response. PMID:22365569

  12. Evaluation of Using Caged Clams to Monitor Contaminated Groundwater Exposure in the Near-Shore Environment of the Hanford Site 300 Area

    SciTech Connect

    Larson, Kyle B.; Poston, Ted M.; Tiller, Brett L.

    2008-01-31

    The Asiatic clam (Corbicula fluminea) has been identified as an indicator species for locating and monitoring contaminated groundwater in the Columbia River. Pacific Northwest National Laboratory conducted a field study to explore the use of caged Asiatic clams to monitor contaminated groundwater upwelling in the 300 Area near-shore environment and assess seasonal differences in uranium uptake in relation to seasonal flow regimes of the Columbia River. Additional objectives included examining the potential effects of uranium accumulation on growth, survival, and tissue condition of the clams. This report documents the field conditions and procedures, laboratory procedures, and statistical analyses used in collecting samples and processing the data. Detailed results are presented and illustrated, followed by a discussion comparing uranium concentrations in Asiatic clams collected at the 300 Area and describing the relationship between river discharge, groundwater indicators, and uranium in clams. Growth and survival, histology, and other sources of environmental variation also are discussed.

  13. Mercury Sources and Cycling in the Great Lakes: Dramatic Changes Resulting from Altered Atmospheric Loads and the Near-Shore Shunt

    NASA Astrophysics Data System (ADS)

    Krabbenhoft, D. P.; DeWild, J. F.; Maglio, M. M.; Tate, M. T.; Ogorek, J. M.; Hurley, J. P.; Lepak, R.

    2013-12-01

    there have been large declines in surface water total Hg concentrations (50-75%) across the Great Lakes since about 2000, an observation in agreement with concurrent declines in atmospheric deposition. In addition to a decline in inputs, we hypothesize that appreciable increases in volatilization of gaseous Hg have occurred. Mercury volatilization is directly related to water clarity (via the photo-reduction process), which has increased substantially in the Great Lakes since the invasion of zebra mussels and quagga mussels. Finally, although substantial declines in total aqueous Hg levels are apparent, fish mercury levels over the same time period appear to be relatively steady, and in some locations increasing. We submit this apparent discordance is also the outcome of the invasive mussels, which have caused near-shore eutrophication and off-shore oligotrophication commonly referred to as the near-shore shunt. Initial sampling by this project has revealed that these eutrophied zones are markedly enriched in MeHg. Therefore, it appears that while the open water regions of the Great Lakes appear to have experienced significant aqueous Hg declines, fish Hg levels may be responding to a new site of methylation in the near-shore zone.

  14. Reconciling opposing views on carbon cycling in the coastal ocean: Continental shelves as sinks and near-shore ecosystems as sources of atmospheric CO 2

    NASA Astrophysics Data System (ADS)

    Chen, Chen-Tung Arthur; Borges, Alberto V.

    2009-04-01

    Despite their moderately sized surface area, continental marginal seas play a significant role in the biogeochemical cycles of carbon, as they receive huge amounts of upwelled and riverine inputs of carbon and nutrients, sustaining a disproportionate large biological activity compared to their relative surface area. A synthesis of worldwide measurements of the partial pressure of CO 2 (pCO 2) indicates that most open shelves in the temperate and high-latitude regions are under-saturated with respect to atmospheric CO 2 during all seasons, although the low-latitude shelves seem to be over-saturated. Most inner estuaries and near-shore coastal areas on the other hand are over-saturated with respect to atmospheric CO 2. The scaling of air-sea CO 2 fluxes based on pCO 2 measurements and carbon mass-balance calculations indicate that the continental shelves absorb atmospheric CO 2 ranging between 0.33 and 0.36 Pg C yr -1 that corresponds to an additional sink of 27% to ˜30% of the CO 2 uptake by the open oceans based on the most recent pCO 2 climatology [Takahashi, T., Sutherland, S.C., Wanninkhof, R., Sweeney, C., Feely, R.A., Chipman, D., Hales, B., Friederich, G., Chavez, F., Watson, A., Bakker, D., Schuster, U., Metzl, N., Inoue, H.Y., Ishii, M., Midorikawa, T., Sabine, C., Hoppema, M., Olafsson, J., Amarson, T., Tilbrook, B., Johannessen, T., Olsen, A., Bellerby, R., De Baar, H., Nojiri, Y., Wong, C.S., Delille, B., Bates, N., 2009. Climatological mean and decadal change in surface ocean pCO 2, and net sea-air CO 2 flux over the global oceans. Deep-Sea Research II, this issue [doi: 10.1016/j.dsr2.2008.12.009].]. Inner estuaries, salt marshes and mangroves emit up to 0.50 Pg C yr -1, although these estimates are prone to large uncertainty due to poorly constrained ecosystem surface area estimates. Nevertheless, the view of continental shelves as sinks and near-shore ecosystems as sources of atmospheric CO 2 allows reconciling long-lived opposing views on carbon

  15. Methane oxidation coupled to oxygenic photosynthesis in anoxic waters

    PubMed Central

    Milucka, Jana; Kirf, Mathias; Lu, Lu; Krupke, Andreas; Lam, Phyllis; Littmann, Sten; Kuypers, Marcel MM; Schubert, Carsten J

    2015-01-01

    Freshwater lakes represent large methane sources that, in contrast to the Ocean, significantly contribute to non-anthropogenic methane emissions to the atmosphere. Particularly mixed lakes are major methane emitters, while permanently and seasonally stratified lakes with anoxic bottom waters are often characterized by strongly reduced methane emissions. The causes for this reduced methane flux from anoxic lake waters are not fully understood. Here we identified the microorganisms and processes responsible for the near complete consumption of methane in the anoxic waters of a permanently stratified lake, Lago di Cadagno. Interestingly, known anaerobic methanotrophs could not be detected in these waters. Instead, we found abundant gamma-proteobacterial aerobic methane-oxidizing bacteria active in the anoxic waters. In vitro incubations revealed that, among all the tested potential electron acceptors, only the addition of oxygen enhanced the rates of methane oxidation. An equally pronounced stimulation was also observed when the anoxic water samples were incubated in the light. Our combined results from molecular, biogeochemical and single-cell analyses indicate that methane removal at the anoxic chemocline of Lago di Cadagno is due to true aerobic oxidation of methane fuelled by in situ oxygen production by photosynthetic algae. A similar mechanism could be active in seasonally stratified lakes and marine basins such as the Black Sea, where light penetrates to the anoxic chemocline. Given the widespread occurrence of seasonally stratified anoxic lakes, aerobic methane oxidation coupled to oxygenic photosynthesis might have an important but so far neglected role in methane emissions from lakes. PMID:25679533

  16. Survey of the state of the art in near-shore pipeline location and burial assessment. Topical report, August 1990--November 1991

    SciTech Connect

    Wilkey, P.L.

    1991-11-01

    Project`s objective is to evaluate state-of-the-art methods for locating pipelines in shallow (less than 15 ft) water and for determining and monitoring their burial depths. The following recommendations are made on the research needed in three areas for locating near-shore, shallowly buried pipelines: (1) Sensors: The pipeline industry has selected the magnetic gradiometer array (GA) as a preferred sensor method. Other potential methods exist as backups. No additional research is recommended. (2) Remotely Operated Vehicles (ROVs): The Pipeline Research Committee is pursuing development of a prototype ROV is deliver the GA or other similar equipment to pipeline locations. (3) Phenomena: The data being collected from research on the phenomena affecting seabed conditions and the bathymetric data being collected along the Gulf Coast should be synthesized. This new effort should focus on identifying erosion-prone areas with respect to present and potential future pipeline locations. Technical approach is to get the broadest perspective on the concerns related to the determination of burial conditions for offshore pipelines, Argonne National Laboratory (ANL) contacted individuals and organizations from the gas and petroleum industries, hardware and software vendors, academicians, and representatives from the government. A literature survey yielded the names of persons within academia who are presently working on similar applications with sensors. In the oil and gas industry, individuals and organizations involved in the Pipeline Research Committee made extensive contributions to the review and also provided the names of meaningful contacts from among their vendors. Discussions were held with the various persons both on the telephone and face to face. Vendors provided background materials and overview presentations on their capabilities for ANL to review.

  17. Harmful algal blooms (HABs), dissolved organic matter (DOM), and planktonic microbial community dynamics at a near-shore and a harbour station influenced by upwelling (SW Iberian Peninsula)

    NASA Astrophysics Data System (ADS)

    Loureiro, Sofia; Reñé, Albert; Garcés, Esther; Camp, Jordi; Vaqué, Dolors

    2011-05-01

    The surface microalgal community, including harmful species, dissolved organic matter (DOM), and bacterial and viral populations were studied during an annual cycle (November 2007-October 2008) in a Near-shore (NS) and a Harbour (H) station located in an upwelling area (Sagres, SW Iberian Peninsula). The higher water residence time, water stability and shallowness of harbours in comparison with open waters likely contributed to the differences found between stations regarding chemical variables, statistical correlations and harmful algal proliferations. Also, several differences were noticed from a previous assessment ( Loureiro et al., 2005) including higher SST, lower nitrate and chlorophyll a concentrations, along with a shift in the microplankton community structure from diatom to nanoflagellate predominance. These variations feasibly reflect the response of this dynamic system to regional environmental modifications contributing to the understanding of common patterns in environmental change trends. The division of the sampling period into (1) non-upwelling (Non-Uw), (2) "spin-up" of upwelling (SU-Uw), and (3) "spin-down" and relaxation-downwelling (SD-Rel) stages allowed the identification of natural groupings of microplankton samples by Multi Dimensional Scaling (MDS) analysis. Dissolved organic nitrogen (DON) and viruses were the most significant abiotic and biotic variables, respectively, contributing to the dissimilarities between these stages (SIMPER analysis) and, therefore, potentially affecting the microplankton community structure. Harmful algal species and a stable viral community appeared to be favoured by SD-Rel conditions. Data seem to indicate that both Gymnodinium catenatum and Heterosigma akashiwo, the most abundant potentially harmful species, have been imported into the sampling area. Also, the H location, together with potential retention sites developing around the Cabo de São Vicente upwelling centre, may contribute to the local

  18. Characterization of the Lower Aptian Oceanic Anoxic Event (OAE) 1a in the Eastern Iberian Chain (Maestrat Basin, E Spain) by Means of Ammonite Biostratigraphy

    NASA Astrophysics Data System (ADS)

    Moreno-Bedmar, J. A.; Company, M.; Bover-Arnal, T.; Delanoy, G.; Martinez, R.; Grauges, A.; Salas, R.

    2008-05-01

    Oceanic Anoxic Event 1a (OAE1a) is now generally recognized to correlate with the lower part of the Leupoldina cabri planktonic foraminifer Zone. Unfortunately, the calibration of this zone against the standard ammonite scale has remained uncertain. Our recent high-resolution geochemical study (Carbon-isotope) of Lower Aptian sequences in the Iberian Chain of eastern Spain (Moreno-Bedmar et al., in prep) was used as proxy to further characterize OAE 1a. The sequence provides additional ammonite biostratigraphic data that permit correlation of the ammonite zonation with the isotopic signature of OAE1a. That interval includes specimens we identified with affinity for species of Roloboceras and Megatyloceras in the same beds that contain species of Deshayesites forbesi Casey, and Deshayesites gr. euglyphus/spathi, which are characteristic of the Deshayesites weissi Zone. Our results also indicate that D. deshayesi (d'Orbigny), the nominate taxon which marks the base of the superjacent Zone, first occurs a few meters above the geochemical signature corresponding to OAE 1a. Our isotopic data correlated with the ammonite occurrences are in further agreement with Roloboceras beds in England (Casey, 1961a, b; Casey et al., 1998) that are correlational with the Boreal Deshayesites forbesi Zone, which is coeval with the Mediterranean Deshayesites weissi Zone. Similarly, in the Cassis-La Bédoule area (SE France) the OAE 1a interval also corresponds to the Roloboceras beds, but they have been assigned to the Deshayesites deshayesi biozone (Ropolo et al., 2000; 2006). Here we argue that specimens attributed to D. deshayesi (d'Orbigny) and D. dechyi (Papp) from the Roloboceras levels (Ropolo et al., 2006) can be reinterpreted as belonging to D. forbesi, characteristic species of Deshayesites weissi Zone. Stratigraphic data from Roloboceras beds in le Teil region (Ardech patform, SE France) also reveal the presence of Deshayesites consobrinus (d'Orbigny) and Deshayesites gr

  19. Isorenieratane record in black shales from the Paris Basin, France: Constraints on recycling of respired CO2 as a mechanism for negative carbon isotope shifts during the Toarcian oceanic anoxic event

    NASA Astrophysics Data System (ADS)

    van Breugel, Yvonne; Baas, Marianne; Schouten, Stefan; Mattioli, Emanuela; Sinninghe Damsté, Jaap S.

    2006-12-01

    The prominent negative stable carbon isotope excursion in both carbonate and organic carbon recorded in organic-rich sediments deposited during the Toarcian oceanic anoxic event (OAE) has commonly been explained by recycling of 13C-depleted CO2 (the so-called Küspert model). More recently, the massive release of 13C-depleted methane or other forms of 13C-depleted carbon was also proposed to account for the observed negative δ13C excursions in organic carbon of terrigenous as well as of marine origin. The occurrence of diagenetic products of the carotenoid isorenieratene (isorenieratane and other aryl isoprenoids) in Toarcian black shales has been regarded as supporting evidence for the Küspert hypothesis as they point to strong stratification of the epicontinental seas. A section of a drill core straddling the Toarcian of the Paris Basin (Cirfontaine-en-Ornois) contained intact isorenieratane, providing evidence that photosynthetic green sulphur bacteria were present at the time of deposition, even prior to the OAE. However, the isorenieratane abundances are very low in the section where the negative δ13C excursion in organic carbon and phytane, a chemical fossil derived from chlorophyll, occurs. The abundance of the isorenieratene derivatives increases, once the δ13C records have shifted to more positive values. The δ13C of isorenieratane (generally circa -13.1 ± 0.5 ‰) indicates that the respired CO2 contribution at the chemocline was low and is thus not likely to be the main cause of the prominent up to 7‰ negative δ13C shift recorded in Toarcian organic carbon records.

  20. The first metazoa living in permanently anoxic conditions

    PubMed Central

    2010-01-01

    Background Several unicellular organisms (prokaryotes and protozoa) can live under permanently anoxic conditions. Although a few metazoans can survive temporarily in the absence of oxygen, it is believed that multi-cellular organisms cannot spend their entire life cycle without free oxygen. Deep seas include some of the most extreme ecosystems on Earth, such as the deep hypersaline anoxic basins of the Mediterranean Sea. These are permanently anoxic systems inhabited by a huge and partly unexplored microbial biodiversity. Results During the last ten years three oceanographic expeditions were conducted to search for the presence of living fauna in the sediments of the deep anoxic hypersaline L'Atalante basin (Mediterranean Sea). We report here that the sediments of the L'Atalante basin are inhabited by three species of the animal phylum Loricifera (Spinoloricus nov. sp., Rugiloricus nov. sp. and Pliciloricus nov. sp.) new to science. Using radioactive tracers, biochemical analyses, quantitative X-ray microanalysis and infrared spectroscopy, scanning and transmission electron microscopy observations on ultra-sections, we provide evidence that these organisms are metabolically active and show specific adaptations to the extreme conditions of the deep basin, such as the lack of mitochondria, and a large number of hydrogenosome-like organelles, associated with endosymbiotic prokaryotes. Conclusions This is the first evidence of a metazoan life cycle that is spent entirely in permanently anoxic sediments. Our findings allow us also to conclude that these metazoans live under anoxic conditions through an obligate anaerobic metabolism that is similar to that demonstrated so far only for unicellular eukaryotes. The discovery of these life forms opens new perspectives for the study of metazoan life in habitats lacking molecular oxygen. PMID:20370908

  1. Corrigendum to "Basin-scale controls on the molybdenum-isotope composition of seawater during Oceanic Anoxic Event 2 (Late Cretaceous)" [Geochim. Cosmochim. Acta 178 (2016) 291-306

    NASA Astrophysics Data System (ADS)

    Dickson, Alexander J.; Jenkyns, Hugh C.; Porcelli, Donald; van den Boorn, Sander; Idiz, Erdem; Owens, Jeremy D.

    2016-09-01

    A recent molybdenum-isotope estimate of the extent of anoxic and euxinic conditions in the world ocean during Oceanic Anoxic Event 2 (∼94 Ma) concluded by discussing a contrast between the new results with existing estimates of marine euxinia based on sulphur isotopes. This suggested contrast was erroneous; when areal extents of marine anoxia and euxinia are calculated for both isotopic proxies, the agreement is actually striking, and highlights the fact that large areas of the global ocean probably remained well ventilated during this event.

  2. Methane oxidation and methane fluxes in the ocean surface layer and deep anoxic waters

    NASA Technical Reports Server (NTRS)

    Ward, B. B.; Kilpatrick, K. A.; Novelli, P. C.; Scranton, M. I.

    1987-01-01

    Measured biological oxidation rates of methane in near-surface waters of the Cariaco Basin are compared with the diffusional fluxes computed from concentration gradients of methane in the surface layer. Methane fluxes and oxidation rates were investigated in surface waters, at the oxic/anoxic interface, and in deep anoxic waters. It is shown that the surface-waters oxidation of methane is a mechanism which modulates the flux of methane from marine waters to the atmosphere.

  3. The challenge of proving the existence of metazoan life in permanently anoxic deep-sea sediments.

    PubMed

    Danovaro, Roberto; Gambi, Cristina; Dell'Anno, Antonio; Corinaldesi, Cinzia; Pusceddu, Antonio; Neves, Ricardo Cardoso; Kristensen, Reinhardt Møbjerg

    2016-01-01

    The demonstration of the existence of metazoan life in absence of free oxygen is one of the most fascinating and difficult challenges in biology. Danovaro et al. (2010) discovered three new species of the Phylum Loricifera, living in the anoxic sediments of the L'Atalante, a deep-hypersaline anoxic basin of the Mediterranean Sea. Multiple and independent analyses based on staining, incorporation of radiolabeled substrates, CellTracker Green incorporation experiments and ultra-structure analyses, allowed Danovaro et al. (2010) to conclude that these animals were able to spend their entire life cycle under anoxic conditions. Bernhard et al. (2015) investigated the same basin. Due to technical difficulties in sampling operations, they could not collect samples from the permanently anoxic sediment, and sampled only the redoxcline portion of the L'Atalante basin. They found ten individuals of Loricifera and provided alternative interpretations of the results of Danovaro et al. (2010). Here we analyze these interpretations, and present additional evidence indicating that the Loricifera encountered in the anoxic basin L'Atalante were actually alive at the time of sampling. We also discuss the reliability of different methodologies and approaches in providing evidence of metazoans living in anoxic conditions, paving the way for future investigations.This paper is a response to Bernhard JM, Morrison CR, Pape E, Beaudoin DJ, Todaro MA, Pachiadaki MG, Kormas KAr, Edgcomb VG. 2015. Metazoans of redoxcline sediments in Mediterranean deep-sea hypersaline anoxic basins. BMC Biology 2015 13:105.See research article at http://bmcbiol.biomedcentral.com/articles/10.1186/s12915-015-0213-6. PMID:27267928

  4. Anoxic monimolimnia: Nutrients devious feeders or bombs ready to explode?

    NASA Astrophysics Data System (ADS)

    Gianni, Areti; Zacharias, Ierotheos

    2015-04-01

    Coastal regions are under strong human influence and its environmental impact is reflected into their water quality. Oligotrophic estuaries and coastal systems have changed in mesotrophic and/or eutrophic, shown an increase in toxic algal blooms, hypoxic/anoxic events, and massive mortalities of many aquatic and benthic organisms. In strongly stratified and productive water basins, bottom water dissolved oxygen is depleted due to the excessive organic matter decomposition in these depths. Distribution and recycling of nutrients in their water column is inextricably dependent on oxygenation and redox conditions. Bottom water anoxia accelerates PO43-, NH4+ and H2S recycling and accumulation from organic matter decomposition. The anoxic, H2S, PO43- and NH4+ rich bottom water constitutes a toxic layer, threatening the balance of the entire ecosystem. In permanently stratified water basins, storm events could result in stratification destruction and water column total mixing. The turnover brings large amounts of H2S to the surface resulting in low levels of oxygen and massive fish kills. PO43- and NH4+ are released to the interface and surface waters promoting algal blooms. Μore organic matter is produced fueling anoxia. The arising question is, whether the balance of an anoxic water ecosystem is under the threat of its hypolimnetic nutrient and sulfide load, only in the case of storm events and water column total mixing. In polymictic water basins it is clear that the accumulated, in the bottom layer, nutrients will supply surface waters, after the pycnocline overturn. Besides this mechanism of basins' water quality degradation is nowadays recognized as one of the biggest obstacles in eutrophic environments management and restoration efforts. The role of internal load, in permanently stratified water basins, is not so clear. In the present study the impact of storm events on water column stability and bottom water anoxia of meromictic coastal basins, is investigated

  5. Biogeochemical consequences of an oxygenated intrusion into an anoxic fjord

    PubMed Central

    2014-01-01

    Background This paper is based on the studies of the biogeochemical structure of the water column in the anoxic Fjord Hunnbunn (south-eastern Norway) performed in 2009, 2011 and 2012. This Fjord is an enclosed basin of brackish water separated by a narrow and shallow outlet to the sea with a permanently anoxic layer. We show how an oxygenated intrusion could lead to both positive and negative effects on the ecosystem state in Hunnbunn due to a change in the biogeochemical structure. Results During the stratified periods in 2009 and 2012 the anoxic layer amounted to approximately 10% of the total water volume in the Fjord, while dissolved oxygen (DO) was present in 80-90% of the water. In the autumn of 2011 the water chemistry structure observed in Fjord Hunnbunn was clearly affected by a recent oxygenated intrusion defined by abnormal salinity patterns. This led to a shift of the DO boundary position to shallower depths, resulting in a thicker anoxic layer comprising approximately 40% of the total water volume, with DO present only in approximately 60% of the water. The oxygenated water intrusions led to a twofold decrease of the concentrations of hydrogen sulphide, ammonia, phosphate and silicate in the deep layers with a simultaneous increase of these nutrients and a decrease of the pH level in the surface layers. The concentrations of manganese, iron, and mercury species changed dramatically and in particular revealed a significant supply of iron and methylmercury to the water column. Conclusions Oxic water intrusions into anoxic fjords could lead not only to the flushing of the bottom anoxia, but to a dispersal of sulphidic and low oxygen conditions to the larger bottom area. The elevation of the hydrogen sulphide to the shallower layers (that can be rapidly oxidized) is accompanied by the appearance in the subsurface water of methylmercury, which is easily accumulated by organisms and can be transported to the surrounding waters, affecting the ecosystem over a

  6. Pyritization of trace metals in anoxic marine sediments

    NASA Astrophysics Data System (ADS)

    Huerta-Diaz, Miguel A.; Morse, John W.

    1992-07-01

    The pyritization of reactive trace elements in different anoxic marine sediments was investigated to determine the importance of factors such as ∑H 2S, reactive-Fe, pyrite content and salinity in controlling this process. The areas studied included anoxic-sulfidic sediments (Baffin Bay, a hypersaline coastal lagoon from Texas and Green Canyon, a hemipelagic oil seepage area), anoxic-nonsulfidic sediments with high sedimentation rates (Atchafalaya Bay-Mississippi Delta system), hemipelagic anoxic-nonsulfidic sediments with low sedimentation rates (Gulf of Mexico shelf and slope and Orca Basin, an euxinic hypersaline basin) and organic-rich marsh sediments (Atchafalaya Bay). Results indicate that the degree of trace metal pyritization (DTMP) of all trace metals, except Cd, increased with increasing degree of pyritization (DOP), irrespective of the type of sedimentary environment involved. However, for As, Hg and Mo, the DTMP/DOP values were generally above the 1:1 ratio line, whereas the transition metals Co, Cu, Mn and Ni displayed a close to linear increase in DTMP with DOP and moderate incorporation into pyrite. Chromium and the class B metals Pb and Zn were also gradually incorporated into the pyrite phase but without reaching the DTMP levels exhibited by the transition metals. Cadmium was not incorporated to a significant extent. These results are consistent with the chemical attributes of these different classes of trace elements. Availability of dissolved trace metals and organic matter content are apparently important factors controlling the incorporation of Co, Cr, Cu and Ni into pyrite in anoxicsulfidic (Fe-poor and H 2S-rich) environments.

  7. Dense bottom gravity currents and their impact on pelagic methanotrophy at oxic/anoxic transition zones

    NASA Astrophysics Data System (ADS)

    Schmale, Oliver; Krause, Srefan; Holtermann, Peter; Power Guerra, Nicole C.; Umlauf, Lars

    2016-04-01

    Interfaces between oxic and anoxic water bodies represent distinct zones in which the activity of specially adapted microbes often controls biogeochemical transformations. Anoxic basins as the Black Sea, the Cariaco Basin, and the Baltic Sea represent ideal locations to examine these processes, the involved microorganisms, and the influence of their metabolism on the turnover of different substances. Taking the Baltic Sea as an example, it is shown here that turbulent mixing of sulfidic and oxic waters may have a strong impact on microbially-mediated transformations. Direct evidence for these processes was derived from observations of methane oxidizing bacteria (MOB), their activity, and turbulence inside a sharp redox interface, freshly generated by a large-scale intrusion of oxic waters into the sulfidic deep layers of the central Baltic Sea (Gotland Basin). Based on detailed turbulence measurements, different mixing regimes along the basin slope were defined in our study to characterize the effect of turbulent mixing on MOB abundances and methanotrophic activities. We found that methane oxidation rates inside the oxic/anoxic transition zone at the shallow entrance of the basin were five times higher compared to the weakly turbulent redoxcline region in the deep interior of the basin. We propose that high mixing rates in the entrance and the close vicinity of two oxic/anoxic transition zones increased the flux of oxygen and methane into the transition zone, and consequently stimulated the growth of the MOB population and their activity. In contrast, low mixing rates in the stagnant interior of the basin reduced the flux of these gases into the transition zone, explaining the relatively small MOB population size and low methane turnover rates observed in the center of the basin.

  8. Geochemistry of oceanic anoxic events

    NASA Astrophysics Data System (ADS)

    Jenkyns, Hugh C.

    2010-03-01

    Oceanic anoxic events (OAEs) record profound changes in the climatic and paleoceanographic state of the planet and represent major disturbances in the global carbon cycle. OAEs that manifestly caused major chemical change in the Mesozoic Ocean include those of the early Toarcian (Posidonienschiefer event, T-OAE, ˜183 Ma), early Aptian (Selli event, OAE 1a, ˜120 Ma), early Albian (Paquier event, OAE 1b, ˜111 Ma), and Cenomanian-Turonian (Bonarelli event, C/T OAE, OAE 2, ˜93 Ma). Currently available data suggest that the major forcing function behind OAEs was an abrupt rise in temperature, induced by rapid influx of CO2 into the atmosphere from volcanogenic and/or methanogenic sources. Global warming was accompanied by an accelerated hydrological cycle, increased continental weathering, enhanced nutrient discharge to oceans and lakes, intensified upwelling, and an increase in organic productivity. An increase in continental weathering is typically recorded by transient increases in the seawater values of 87Sr/86Sr and 187Os/188Os ratios acting against, in the case of the Cenomanian-Turonian and early Aptian OAEs, a longer-term trend to less radiogenic values. This latter trend indicates that hydrothermally and volcanically sourced nutrients may also have stimulated local increases in organic productivity. Increased flux of organic matter favored intense oxygen demand in the water column, as well as increased rates of marine and lacustrine carbon burial. Particularly in those restricted oceans and seaways where density stratification was favored by paleogeography and significant fluvial input, conditions could readily evolve from poorly oxygenated to anoxic and ultimately euxinic (i.e., sulfidic), this latter state being geochemically the most significant. The progressive evolution in redox conditions through phases of denitrification/anammox, through to sulfate reduction accompanied by water column precipitation of pyrite framboids, resulted in fractionation of

  9. Apparent removal of the transient tracer carbon tetrachloride from anoxic seawater

    SciTech Connect

    Krysell, M.; Fogelqvist, E.; Tanhua, T. |

    1994-11-01

    Two chlorofluorocarbons (CFC-11 and carbon tetrachloride, CCl4) widely used as tracers for dating water masses, were measured in the Gotland Basin of the Baltic Sea. At the time of the survey, the bottom water of the basin had remained stagnant for 15 years and anoxic for about the same period of time, and the concentrations of both CFC-11 and CCl4 decrease dramatically with depth below the mixed layer. Furthermore, the ratio of CFC-11 to CCl4 increases with depth under the mixed layer along with a steep decrease in oxygen concentration. This is contrary to what would be expected from the atmospheric histories. The most plausible explanation for this is that there is a mechanism whereby the CCl4 is removed from the water mass under anoxic and suboxide conditions.

  10. Photochemical synthesis of biomolecules under anoxic conditions

    NASA Technical Reports Server (NTRS)

    Folsome, C.; Brittain, A.; Zelko, M.

    1983-01-01

    The long-wavelength UV anoxic photosynthesis of uracil, various sugars (including deoxyribose and glycoaldehyde), amino acids, and other organic photoproducts is reported. The reactions were conducted in a mixture of water, calcium carbonate, hydrazine, and formaldehyde which were subjected to 24 hr or 72 hr radiation. Product yields were greatest when the hydrazine/formaldehyde ratio was one, and when the reactant concentrations were low. These data suggest that organic products can be formed in variety from those amounts of formaldehyde and hydazine precursors which are themselves formed under anoxic UV photochemical conditions.

  11. Gradual and sustained carbon dioxide release during Aptian Oceanic Anoxic Event 1a

    NASA Astrophysics Data System (ADS)

    Naafs, B. D. A.; Castro, J. M.; de Gea, G. A.; Quijano, M. L.; Schmidt, D. N.; Pancost, R. D.

    2016-02-01

    During the Aptian Oceanic Anoxic Event 1a, about 120 million years ago, black shales were deposited in all the main ocean basins. The event was also associated with elevated sea surface temperatures and a calcification crisis in calcareous nannoplankton. These environmental changes have been attributed to variations in atmospheric CO2 concentrations, but the evolution of the carbon cycle during this event is poorly constrained. Here we present records of atmospheric CO2 concentrations across Oceanic Anoxic Event 1a derived from bulk and compound-specific δ13C from marine rock outcrops in southern Spain and Tunisia. We find that CO2 concentrations doubled in two steps during the oceanic anoxic event and remained above background values for approximately 1.5-2 million years before declining. The rise of CO2 concentrations occurred over several tens to hundreds of thousand years, and thus was unlikely to have resulted in any prolonged surface ocean acidification, suggesting that CO2 emissions were not the primary cause of the nannoplankton calcification crisis. We find that the period of elevated CO2 concentrations coincides with a shift in the oceanic osmium-isotope inventory associated with emplacement of the Ontong Java Plateau flood basalts, and conclude that sustained volcanic outgassing was the primary source of carbon dioxide during Oceanic Anoxic Event 1a.

  12. Arctic Ocean circulation during the anoxic Eocene Azolla event

    NASA Astrophysics Data System (ADS)

    Speelman, Eveline; Sinninghe Damsté, Jaap; März, Christian; Brumsack, Hans; Reichart, Gert-Jan

    2010-05-01

    The Azolla interval, as encountered in Eocene sediments from the Arctic Ocean, is characterized by organic rich sediments ( 4wt% Corg). In general, high levels of organic matter may be caused by increased productivity, i.e. extensive growth of Azolla, and/or enhanced preservation of organic matter, or a combination of both. Anoxic (bottom) water conditions, expanded oxygen minimum zones, or increased sedimentation rates all potentially increase organic matter preservation. According to plate tectonic, bathymetric, and paleogeographic reconstructions, the Arctic Ocean was a virtually isolated shallow basin, with one possible deeper connection to the Nordic Seas represented by a still shallow Fram Strait (Jakobsson et al., 2007), hampering ventilation of the Arctic Basin. During the Azolla interval surface waters freshened, while at the same time bottom waters appear to have remained saline, indicating that the Arctic was highly stratified. The restricted ventilation and stratification in concert with ongoing export of organic matter most likely resulted in the development of anoxic conditions in the lower part of the water column. Whereas the excess precipitation over evaporation maintained the freshwater lid, sustained input of Nordic Sea water is needed to keep the deeper waters saline. To which degree the Arctic Ocean exchanged with the Nordic Seas is, however, still largely unknown. Here we present a high-resolution trace metal record (ICP-MS and ICP-OES) for the expanded Early/Middle Eocene section capturing the Azolla interval from Integrated Ocean Drilling Program (IODP) Expedition 302 (ACEX) drilled on the Lomonosov Ridge, central Arctic Ocean. Euxinic conditions throughout the interval resulted in the efficient removal of redox sensitive trace metals from the water column. Using the sedimentary trace metal record we also constrained circulation in the Arctic Ocean by assessing the relative importance of trace metal input sources (i.e. fluvial, eolian, and

  13. Molybdenum drawdown during Cretaceous Oceanic Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    Goldberg, Tatiana; Poulton, Simon W.; Wagner, Thomas; Kolonic, Sadat F.; Rehkämper, Mark

    2016-04-01

    During the Cretaceous greenhouse, episodes of widespread ocean deoxygenation were associated with globally occurring events of black shale deposition. Possibly the most pronounced of these oceanic anoxic events (OAE's) was the Cenomanian-Turonian OAE2 (∼94 Ma). However, although certain redox sensitive trace metals tend to be preferentially sequestered in sediments deposited under anoxic conditions, with Mo drawdown being specifically prone to euxinic settings, these elements are generally somewhat depleted in sediments deposited during OAE2. To understand the driving factors responsible for this depleted trace metal drawdown, we have studied a low latitude section from the proto-North Atlantic Ocean (Tarfaya S57), where existing biomarker and iron-sulphur data point to a dominantly euxinic water column, with periodic transitions to ferruginous (Fe-rich) water column conditions. We utilise a variety of redox proxies (Fe-speciation, redox sensitive trace metals and Mo isotopes), which, in combination, allows us to evaluate the detailed nature of ocean redox conditions and hence controls on trace metal drawdown. The results suggest that seawater δ98Mo values may have ranged between ∼0.6 and 1.1‰ during OAE2, likely connected to changes in the local Mo reservoir as a consequence of low and probably heterogeneous concentrations of Mo in the ocean. The very low Mo/TOC ratios at Tarfaya and elsewhere in the proto-North Atlantic may support a model in which deep-water circulation was partially restricted within and between the North Atlantic and other ocean basins. We propose that the combination of a low and possibly heterogeneous δ98Mo of seawater Mo, together with low Mo/TOC ratios, points to a large decrease in the global oceanic Mo reservoir during OAE2, reflecting a major global scale increase in Mo drawdown under persistent euxinic conditions.

  14. Oxic and Anoxic Regions of Subseafloor Sediment

    NASA Astrophysics Data System (ADS)

    D'Hondt, S.; Pockalny, R. A.; Spivack, A. J.; Inagaki, F.; Murray, R. W.; Adhikari, R. R.; Gribsholt, B.; Kallmeyer, J.; McKinley, C. C.; Morono, Y.; Røy, H.; Sauvage, J.; Ziebis, W.

    2015-12-01

    Dissolved oxygen content defines two broad categories of subseafloor sediment. In areas with high rates of microbial respiration, most of the sediment column is anoxic and active anaerobic microbial communities are present for hundreds of meters or more below the seafloor. In these regions, O2 and aerobic communities penetrate only millimeters to centimeters into the sediment from the sediment-water interface. In some areas of active fluid flow through the underlying basalt, O2 may also penetrate meters upward into the sediment from the basalt. In areas with low sedimentary respiration, O2 and aerobic communities penetrate tens of meters downward from the seafloor and may persist throughout the entire sediment column. IODP Expedition 329 showed that microbial cells and aerobic respiration persist through the entire sediment sequence (to depths of at least 75 meters below seafloor) in the South Pacific Gyre. Extrapolating from these results and a global relationship of O2 penetration depth to sedimentation rate and sediment thickness, we suggest that oxygen and aerobic communities occur throughout the entire sediment sequence in 15-44% of the Pacific and 9-37% of the global seafloor. Subduction of sediment from largely anoxic regions and subduction of sediment and basalt from fully oxic regions are respectively sources of reduced and oxidized material to the mantle. The balance between oxic and anoxic regions has presumably changed considerably throughout Earth history. Regions with largely anoxic sediment and regions with fully oxic sediment present fundamentally different opportunities for understanding of (i) paleoceanographic history and (ii) the nature of microbial life under extreme energy limitations.

  15. Impact of Cretaceous sea level rise and anoxic events on the Mesozoic carbonate platform of Yugoslavia

    SciTech Connect

    Jenkyns, H.C. )

    1991-06-01

    The Adriatic/Dinaric carbonate platform of Yugoslavia was influenced by rapid sea level rise and an oceanic anoxic event during the Cenomanian-Turonian. Open-marine biota such as planktonic foraminifera, radiolarians, and locally even ammonites, associated with and bracketed by successions of typical shallow-water carbonates, indicate partial drowning of substantial areas of the platform during this time, suggestive furthermore that the rate of increase of water depth was locally great enough to outpace carbonate production. The presence of carbon-rich and fish-bearing platy limestones, commonly cherty, as an associated coeval facies indicates the development of anoxic or euxinic environments, and the stromatolitic laminations in such rocks are attributed to the action of bacterial mats. It is suggested that an extensive column of deoxygenated water developed in the neighboring Marche-Umbrian-Adriatic deep-water basin and was carried on to the carbonate platform during the Cenomanian-Turonian transgression.

  16. Dense bottom gravity currents and their impact on pelagic methanotrophy at oxic/anoxic transition zones

    NASA Astrophysics Data System (ADS)

    Schmale, Oliver; Krause, Stefan; Holtermann, Peter; Power Guerra, Nicole C.; Umlauf, Lars

    2016-05-01

    We show that inflows of oxygenated waters into sulfidic layers have a strong impact on biogeochemical transformation at oxic/anoxic transition zones. Taking the pelagic methane dynamics in the Gotland Basin as an example, we performed our studies when one of the largest inflows ever recorded entered the Baltic Sea in March 2015. An inflowing gravity current transported oxic waters into the sulfidic deep layers and freshly generated a near-bottom secondary redox interface. At the upper slope, where the inflowing water masses were vigorously turbulent and the main and secondary redox interfaces in close contact to each other, methane oxidation rates inside the transition zone were found to be higher compared to the weakly turbulent basin interior. At the main redox interface in the basin center, lateral intrusions of oxygenated waters into intermediate water depth may have stimulated the growth of the methanotrophic community and their activity.

  17. Cellular Basis of Anoxic-Ischemic Brain Injury

    PubMed Central

    Bronshvag, Michael M.

    1978-01-01

    Anoxic-ischemic cerebral disease is an important primary cause of morbidity and mortality, and also complicates a number of systemic diseases. Its clinical manifestations, such as hemiparesis and coma, represent cellular injury sustained by the complex, inhomogeneous brain. An understanding of the nature and pattern of anoxic-ischemic cerebral injury, and of the logical basis for avenues of therapy, is necessary to the management of patients with the various anoxic-ischemic disorders. PMID:685270

  18. Are iron-phosphate minerals a sink for phosphorus in anoxic Black Sea sediments?

    PubMed

    Dijkstra, Nikki; Kraal, Peter; Kuypers, Marcel M M; Schnetger, Bernhard; Slomp, Caroline P

    2014-01-01

    Phosphorus (P) is a key nutrient for marine organisms. The only long-term removal pathway for P in the marine realm is burial in sediments. Iron (Fe) bound P accounts for a significant proportion of this burial at the global scale. In sediments underlying anoxic bottom waters, burial of Fe-bound P is generally assumed to be negligible because of reductive dissolution of Fe(III) (oxyhydr)oxides and release of the associated P. However, recent work suggests that Fe-bound P is an important burial phase in euxinic (i.e. anoxic and sulfidic) basin sediments in the Baltic Sea. In this study, we investigate the role of Fe-bound P as a potential sink for P in Black Sea sediments overlain by oxic and euxinic bottom waters. Sequential P extractions performed on sediments from six multicores along two shelf-to-basin transects provide evidence for the burial of Fe-bound P at all sites, including those in the euxinic deep basin. In the latter sediments, Fe-bound P accounts for more than 20% of the total sedimentary P pool. We suggest that this P is present in the form of reduced Fe-P minerals. We hypothesize that these minerals may be formed as inclusions in sulfur-disproportionating Deltaproteobacteria. Further research is required to elucidate the exact mineral form and formation mechanism of this P burial phase, as well as its role as a sink for P in sulfide-rich marine sediments. PMID:24988389

  19. Are Iron-Phosphate Minerals a Sink for Phosphorus in Anoxic Black Sea Sediments?

    PubMed Central

    Dijkstra, Nikki; Kraal, Peter; Kuypers, Marcel M. M.; Schnetger, Bernhard; Slomp, Caroline P.

    2014-01-01

    Phosphorus (P) is a key nutrient for marine organisms. The only long-term removal pathway for P in the marine realm is burial in sediments. Iron (Fe) bound P accounts for a significant proportion of this burial at the global scale. In sediments underlying anoxic bottom waters, burial of Fe-bound P is generally assumed to be negligible because of reductive dissolution of Fe(III) (oxyhydr)oxides and release of the associated P. However, recent work suggests that Fe-bound P is an important burial phase in euxinic (i.e. anoxic and sulfidic) basin sediments in the Baltic Sea. In this study, we investigate the role of Fe-bound P as a potential sink for P in Black Sea sediments overlain by oxic and euxinic bottom waters. Sequential P extractions performed on sediments from six multicores along two shelf-to-basin transects provide evidence for the burial of Fe-bound P at all sites, including those in the euxinic deep basin. In the latter sediments, Fe-bound P accounts for more than 20% of the total sedimentary P pool. We suggest that this P is present in the form of reduced Fe-P minerals. We hypothesize that these minerals may be formed as inclusions in sulfur-disproportionating Deltaproteobacteria. Further research is required to elucidate the exact mineral form and formation mechanism of this P burial phase, as well as its role as a sink for P in sulfide-rich marine sediments. PMID:24988389

  20. Effects of intracellular structural associations on degradation of algal chloropigments in natural oxic and anoxic seawaters

    NASA Astrophysics Data System (ADS)

    Ding, Haibing; Sun, Ming-Yi

    2005-09-01

    To understand the effects of intracellular structural associations on degradation of algal chloropigments, we conducted a series of microcosm experiments by incubating Emiliania huxleyi cells (a marine haptophyte) in natural oxic and anoxic seawaters collected from a stratified water column in the Cariaco Basin. The incubated cell detritus were sequentially treated with two buffer solutions to separate pigment components into soluble and insoluble fractions. By using non-denaturing gel electrophoresis, several chlorophyll-complexes, free chlorophyll, and another unknown chlorophyll-containing component were further separated from the soluble fraction. The chlorophyll-complexes included those bound with high molecular weight core-proteins (CP-I and CP43+CP47) and low molecular weight polypeptides (LHC-I and LHC-II) in the cellular photosystems PS-I and PS-II. Overall pigment recovery from these fractions and gel bands was well equivalent to the total amount from direct acetone extraction of the cells. We followed the time-dependent concentration changes of chlorophyll-a (Chl-a), phaeophorbide-a (Ppb-a), and phaeophytin-a (Ppt-a) in all fractions and complexes to estimate the degradation rate constants of chloropigments in natural oxic and anoxic seawaters. Our experimental results demonstrated that the intracellular structural associations had important influences on degradation of chloropigments under different redox conditions. In general, total Chl-a degraded faster (˜4X) in oxic seawater than in anoxic seawater. However, the rate differences between oxic and anoxic conditions varied among the fractions and complexes. Degradation rate constants of Chl-a in soluble fraction were much higher (>10X) than those in insoluble fraction under both oxic and anoxic conditions. Chl-a bound with the complexes in PS-II appeared to be more reactive (˜2X) than that in PS-I under oxic conditions but the difference in degradation rate constants between two photosystems became

  1. MERCURY RELEASE FROM DISTURBED ANOXIC SOILS

    SciTech Connect

    Jaroslav Solc; Bethany A. Bolles

    2001-07-16

    The primary objectives of experiments conducted at the Energy & Environmental Research Center (EERC) were to provide information on the secondary release of mercury from contaminated anoxic sediments to an aqueous environment after disturbance/change of in situ physical conditions and to evaluate its migration and partitioning under controlled conditions, including implications of these processes for treatment of contaminated soils. Experimental work included (1) characterization of the mercury-contaminated sediment; (2) field bench-scale dredging simulation; (3) laboratory column study to evaluate a longer-term response to sediment disturbance; (4) mercury volatilization from sediment during controlled drying; (5) resaturation experiments to evaluate the potential for secondary release of residual mercury after disturbance, transport, drying, and resaturation, which simulate a typical scenario during soil excavation and transport to waste disposal facilities; and (6) mercury speciation and potential for methylation during column incubation experiments.

  2. Tidally-forced flow in a rotating, stratified, shoaling basin

    NASA Astrophysics Data System (ADS)

    Winters, Kraig B.

    2015-06-01

    Baroclinic flow of a rotating, stratified fluid in a parabolic basin is computed in response to barotropic tidal forcing using the nonlinear, non-hydrostatic, Boussinesq equations of motion. The tidal forcing is derived from an imposed, boundary-enhanced free-surface deflection that advances cyclonically around a central amphidrome. The tidal forcing perturbs a shallow pycnocline, sloshing it up and down over the shoaling bottom. Nonlinearities in the near-shore internal tide produce an azimuthally independent 'set-up' of the isopycnals that in turn drives an approximately geostrophically balanced, cyclonic, near-shore, sub-surface jet. The sub-surface cyclonic jet is an example of a slowly evolving, nearly balanced flow that is excited and maintained solely by forcing in the fast, super-inertial frequency band. Baroclinic instability of the nearly balanced jet and subsequent interactions between eddies produce a weak transfer of energy back into the inertia-gravity band as swirling motions with super-inertial vorticity stir the stratified fluid and spontaneously emit waves. The sub-surface cyclonic jet is similar in many ways to the poleward flows observed along eastern ocean boundaries, particularly the California Undercurrent. It is conjectured that such currents may be driven by the surface tide rather than by winds and/or along-shore pressure gradients.

  3. Paleoceanographic change associated with the Early Aptian Oceanic Anoxic Event in the western Tethys

    NASA Astrophysics Data System (ADS)

    Westermann, S.; Matera, V.; Fiet, N.; Thierry, A.; Follmi, K. B.

    2009-12-01

    The Cretaceous oceanic anoxic events (OAEs) provide a good opportunity to study the biogeochemical pathways and feedbacks linked to environmental change. The early Aptian OAE, labelled OAE 1a, corresponds to one of the most studied anoxic events within the Cretaceous. This event is characterized by a positive excursion in δ13C, preceded by a pronounced negative spike. Here, we propose to improve our understanding of palaeoceanographic change leading to this event and test the proposed models by investigating phosphorus (P) and redox-sensitive trace-element (RSTE) contents in sections through lower Aptian sediments along a basin-shelf transect in the western Tethys. We complement our geochemical analysis by the analysis of organic matter contents. We selected three representative sections: Gorgo a Cerbara (central Italy) in the Umbria Marche basin, Glaise l’Ermitage (SE France) located in the Vocontian Trough and Cassis/La Bédoule (SE France) located along the Provencal platform. The general trend in P accumulation shows an increase at the onset of the early Aptian event followed by a rapid decrease. This suggests an increase in nutrient input, whereas the return to lower values through the first part of the anoxic event may be related to a weakened capacity to retain P in the sedimentary reservoir due to bottom-water oxygen depletion. This general pattern is contrasted by the data of Gorgo a Cerbara, which also show P-enrichments at the top of the Livello Selli. We compared these enrichments to the total organic carbon (TOC) values. The shales with the maximum TOC values correspond also to those with the highest P content. We calculated Corg:Ptot ratios and observed that the highest values correspond to the top of the Selli level. This is interpreted as a reflection of the decreased capacity of storing and preserving phosphorus in oxygen-depleted sediments. RSTE show similar behaviour in the basinal settings. In the section of Gorgo a Cerbara, the data for U, V

  4. Investigating phosphorus uptake in anoxic and sulfidic surface sediments with 33P radiotracer experiments

    NASA Astrophysics Data System (ADS)

    Dijkstra, Nikki; Kraal, Peter; Gonzalez, Santiago; Slomp, Caroline

    2016-04-01

    Phosphorus (P) is a key nutrient for marine organisms. Enhanced P availability in the water column can fuel algal blooms and the development of bottom water anoxia. Recently, it was suggested that micro-organisms in sediments overlain by anoxic and sulfidic bottom waters might take up dissolved P and form Fe(II)-P minerals, thereby enhancing P removal. In this study, we investigated the uptake of P in surface sediments with 33P radiotracer experiments. The sediments were recovered from the anoxic and sulfidic deep basin of the Black Sea and, for comparison, from the adjacent oxic shelf. Results suggest a very fast sedimentary uptake of 33P at all sites but in particular for sediments from the oxic shelf. At all sites, most 33P was sequestered in the citrate-dithionite-bicarbonate-(CDB)-extractable sediment P fraction. No significant differences with abiotic controls were observed, implying that micro-organisms were not directly involved in the P uptake. Whereas 33P uptake by the oxic shelf sediment was likely controlled by sorption of 33P to iron(Fe)-(oxyhydr)oxides, the nature of the CDB-extractable P fraction in the deep basin sediments remains unclear. We discuss whether authigenic formation of Fe(II)-P minerals or fast adsorption of P to calcites may explain our findings.

  5. Sludge minimization using aerobic/anoxic treatment technology

    SciTech Connect

    Mines, R.O. Jr.; Kalch, R.S.

    1999-07-01

    The objective of this investigation was to demonstrate through a bench-scale study that using an aerobic/anoxic sequence to treat wastewater and biosolids could significantly reduce the production of biosolids (sludge). A bench-scale activated sludge reactor and anoxic digester were operated for approximately three months. The process train consisted of a completely-mixed aerobic reactor with wasting of biosolids to an anoxic digester for stabilization. The system was operated such that biomass produced in the aerobic activated sludge process was wasted to the anoxic digester; and biomass produced in the anoxic digester was wasted back to the activated sludge process. A synthetic wastewater consisting of bacto-peptone nutrient broth was fed to the liquid process train. Influent and effluent to the aerobic biological process train were analytically tested, as were the contents of mixed liquor in the aerobic reactor and anoxic digester. Overall removal efficiencies for the activated sludge process with regard to COD, TKN, NH{sub 3}-N, and alkalinity averaged 91, 89, 98, and 38%, respectively. The overall average sludge production for the aerobic/anoxic process was 24% less than the overall average sludge production from a conventional activated sludge bench-scale system fed the same substrate and operated under similar mean cell residence times.

  6. Trace-metal distributions in seawater and anoxic brines in the eastern Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Saager, Paul M.; Schijf, Johan; de Baar, Hein J. W.

    1993-04-01

    The vertical distribution of dissolved and particulate trace metals (Mn, Fe, Ni, Cu, Cd) is reported for seawater and the anoxic brines of Tyro and Bannock Basins in the eastern Mediterranean. In normal Mediterranean seawater, the distribution of dissolved trace metals is governed by water mass circulation, as well as by local input sources. For Cd and possibly Cu, steady-state behaviour is not a viable assumption, probably as a result of anthropogenic sources. In agreement with previous reports, no correlation was observed between dissolved Ni, Cu, Cd and the major nutrients. At the seawater-brine interface, all trace metals show dramatic changes in concentration. In the brines, the concentrations of dissolved Fe and Mn are strongly elevated compared to overlying waters, yet probably limited by formation of solid sulfide and/or carbonate phases. The distributions of dissolved Fe and sulfide show a remarkable mirror image of those found previously in the Orca brine (Gulf of Mexico) and the ionic concentration products are approximately the same in all three basins. The difference in absolute Fe and sulfide concentrations is thought to be caused by a high supply of Fe to Orca Basin. Concentrations of dissolved Ni, Cu and Cd in the brines are at least one order of magnitude lower than in overlying waters, most likely due to formation of solid sulfide phases. We believe these data provide the first indication of substantial nickel-sulfide (co) precipitation within an anoxic basin. Particulate metal concentrations are elevated at the seawater-brine interface and are probably associated with the presence of solid sulfide phases. In addition, the extreme density gradient at the interface will slow the sinking rate of particles and lead to accumulation of particles at the interface due to accumulation.

  7. Origin of first cells at terrestrial, anoxic geothermal fields.

    PubMed

    Mulkidjanian, Armen Y; Bychkov, Andrew Yu; Dibrova, Daria V; Galperin, Michael Y; Koonin, Eugene V

    2012-04-01

    All cells contain much more potassium, phosphate, and transition metals than modern (or reconstructed primeval) oceans, lakes, or rivers. Cells maintain ion gradients by using sophisticated, energy-dependent membrane enzymes (membrane pumps) that are embedded in elaborate ion-tight membranes. The first cells could possess neither ion-tight membranes nor membrane pumps, so the concentrations of small inorganic molecules and ions within protocells and in their environment would equilibrate. Hence, the ion composition of modern cells might reflect the inorganic ion composition of the habitats of protocells. We attempted to reconstruct the "hatcheries" of the first cells by combining geochemical analysis with phylogenomic scrutiny of the inorganic ion requirements of universal components of modern cells. These ubiquitous, and by inference primordial, proteins and functional systems show affinity to and functional requirement for K(+), Zn(2+), Mn(2+), and phosphate. Thus, protocells must have evolved in habitats with a high K(+)/Na(+) ratio and relatively high concentrations of Zn, Mn, and phosphorous compounds. Geochemical reconstruction shows that the ionic composition conducive to the origin of cells could not have existed in marine settings but is compatible with emissions of vapor-dominated zones of inland geothermal systems. Under the anoxic, CO(2)-dominated primordial atmosphere, the chemistry of basins at geothermal fields would resemble the internal milieu of modern cells. The precellular stages of evolution might have transpired in shallow ponds of condensed and cooled geothermal vapor that were lined with porous silicate minerals mixed with metal sulfides and enriched in K(+), Zn(2+), and phosphorous compounds. PMID:22331915

  8. Chlorofluorocarbon-11 removal in anoxic marine waters

    SciTech Connect

    Bullister, J.L.; Lee, B.S.

    1995-07-15

    Measurements of the chlorofluorocarbons CCl{sub 3}F (F-11) and CCl{sub 2}F{sub 2}(F-12) made in the subsurface anoxic zones of the Black Sea and Saanich Inlet, B.C., Canada show a pronounced depletion of dissolved F-11. These zones are strongly reducing and are characterized by the absence of dissolved nitrate (NO{sub 3}{sup {minus}}) and the presence of hydrogen sulfide (H{sub 2}S). Models incorporating the atmospheric input histories of these CFCs and the observed distributions are used to estimate residence times for water in these zones and first order in-situ removal rates for F-11. In contrast, measurements in the mid-depth low-oxygen zone of the eastern Pacific (where NO{sub 3}{sup {minus}} is present and H{sub 2}S is below detection limits) do not show evidence of similar rapid F-11 removal. 22 refs., 3 figs., 1 tab.

  9. The Toarcian Oceanic Anoxic Event: a shallow-water perspective

    NASA Astrophysics Data System (ADS)

    Bodin, Stephane; Krencker, Francois-Nicolas; Kabiri, Lahcen; Immenhauser, Adrian

    2015-04-01

    The Toarcian ocean anoxic event (T-OAE, ca. 183 Ma) corresponds to a major perturbation of the carbon cycle as reflected by a marked decrease (2 to 7 per mil) in carbon-isotope ratios of various carbonate and organic matter phases. Severe environmental perturbations and biotic turnovers are accompanying the unfolding of the T-OAE, which is thought to be initiated by the activity of the Karoo-Ferrar large igneous province. Most of the studies dedicated to the T-OAE were however undertaken in mud-rich, deep-water setting, leaving vast uncertainties about its shallow-water expression and accompanying sea-level fluctuations. Here we present an extensive sedimentological dataset of the shallow-water record of the T-OAE within the Central High Atlas Basin of Morocco. The combination of ammonite and brachiopod biostratigraphy, together with carbon-isotope chemostratigraphy (on both carbonate and organic matter) allows a precise location of the T-OAE in the studied shallow-water sections. Thanks to well-exposed and thick successions, relative sea-level variations were reconstructed on a high-resolution scale, highlighting several important facts. Firstly, the T-OAE interval is preceded by a 50 meters-deep incised valley, observed within the uppermost Polymorphum ammonite zone. Similar observations have been reported from Euro-boreal basins and, together with published evidences of coeval occurrence of relatively cool seawater temperature and low atmospheric pCO2, we postulate that this forced regression is driven by glacio-eustasy. This points at the occurrence of a "cold snap" event just prior to the onset of the T-OAE. Secondly, the inception of the T-OAE is marked by the demise of the Lithiotid-dominated neritic carbonate factory, replaced by siliciclastic-dominated sedimentation during the T-OAE negative carbon isotope shift. Thirdly, an important progradation of oo-biodetritic shoal occurs during the negative carbon isotope plateau, underlying that the renewal of

  10. Dysoxic/anoxic episodes in the Aptian-Albian (Early Cretaceous)

    NASA Astrophysics Data System (ADS)

    Bralower, Timothy J.; Sliter, William V.; Arthur, Michael A.; Leckie, R. Mark; Allard, David; Schlanger, Seymour O.

    New biostratigraphic data suggest, for the first time, that the long Aptian-Albian Oceanic Anoxic Event was marked by at least three distinct, relatively brief episodes of widespread dysoxia/anoxia which interrupted generally oxygenated conditions. The high-resolution, integrated foraminiferal and nannofossil biostratigraphy derived here allows recognition of an apparently ocean-wide dysoxic/anoxic episode in the early Aptian (Globigerinelloides blowi foraminiferal Zone, Chiastozygus litterarius nannofossil Zone, Conusphaera rothii nannofossil Subzone, shortly after magnetic Chron CMO). Equally widespread, but distributionally patchier dysoxic/anoxic episodes occurred in the early Albian (Hedbergella planispira foraminiferal Zone, Prediscosphaera columnata nannofossil Zone, subzone NC8B) and early late Albian (Biticinella breggiensis foraminiferal Zone, Axopodorhabdus albianus nannofossil Zone, subzone NC9B). These episodes can be best recognized in highly carbonaceous sediments deposited in epicontinental basins, now exposed on land, including the lower Aptian "Livello Selli" of the Italian Apennines, the lower Albian "Niveau Paquier" of the Fosse Vocontienne, France, and the lower upper Albian Toolebuc Formation of the Eromanga Basin, Queensland, Australia. Our data indicate that these horizons correlate at the nannofossil subzonal level to carbonaceous intervals in DSDP/ODP sites which were deposited in pelagic and hemipelagic oceanic settings. Although none of these episodes is associated with major biotic extinctions, they are characterized by changes, of variable magnitude, in the community structure of planktonic foraminifera, which commonly consist of a low-diversity assemblage of opportunistic taxa or are entirely absent. Nannofossil taxa in these horizons do not change as radically, but in some sites show marked nearshore affinities or, in other sequences, are possibly replaced by other phytoplankton. Dissolution events cannot be entirely ruled out as a

  11. Animals, anoxic environments, and reasons to go deep.

    PubMed

    Mentel, Marek; Tielens, Aloysius G M; Martin, William F

    2016-01-01

    One of the classic questions in the early evolution of eukaryotic life concerns the role of oxygen. Many unicellular eukaryotes are strict anaerobes and many animals have long anoxic phases in their life cycle. But are there also animals that can complete their life cycle without oxygen? In an ongoing debate in BMC Biology, Danovaro and colleagues say "yes" while Bernhard and colleagues say "no". The debate concerns reports of anoxic metazoans in deep sea anaerobic habitats. PMID:27267982

  12. Arrest of transcription following anoxic exposure in a marine mollusc.

    PubMed

    Larade, Kevin; Storey, Kenneth B

    2007-09-01

    The intertidal marine snail, Littorina littorea, is an anoxia tolerant species that endures long-term oxygen deprivation using a suite of compensatory metabolic adaptations that includes overall metabolic rate depression. Nuclear run-off assays were used to quantify the relative rates of mRNA transcription in nuclear extracts from hepatopancreas of aerobic and anoxic snails. Total [(32)P]-UTP incorporation into RNA by nuclei from 48 h anoxic snails ranged from 42 to 50% of that observed for nuclei from normoxic snails. When this data is transformed with respect to incubation time, the rate of [(32)P]-UTP incorporation by nuclei from 48 h anoxic snails showed a decrease of 68% as compared with the normoxic level. Examination of selected expressed sequence tags also showed an overall decrease in mRNA transcription levels in samples derived from anoxic nuclei as compared with normoxic nuclei. Control of ribosomal translation was also examined by assessing the levels of the eukaryotic initiation factors eIF-2alpha and eIF-4E and the eukaryotic elongation factor-1gamma (eEF-1gamma). Levels of eIF-4E and eEF-1gamma did not change between aerobic and anoxic states, but the amount of phosphorylated inactive eIF-2alpha rose strongly under anoxic conditions indicating that control of this factor is key to suppressing protein translation in anoxic snails. Since gene transcription is an ATP expensive process in cells, suppression of transcription to minimum levels provides substantial energy savings for the hepatopancreas, and the organism as a whole, under anoxic conditions. PMID:17503005

  13. Extreme seawater compositions during Oceanic Anoxic Events

    NASA Astrophysics Data System (ADS)

    Cohen, A.; Bottini, C.; Dickson, A. J.; Izon, G. J.; Coe, A. L.

    2012-12-01

    For almost the entire duration of the Phanerozoic, the oceans have remained well oxygenated and highly conducive to the development of animal and plant life. However, there have been relatively brief intervals, known as Oceanic Anoxic Events (OAEs), when a very significant expansion of low-oxygen regions occurred throughout the world's oceans. OAEs were characterised by highly atypical seawater chemistry, as reflected in the chemical and isotopic compositions of contemporaneous sediments and fossil remains. These oxygen-deficient intervals also exerted profound pressures on many marine species as indicated by major changes in species populations and distributions. High-resolution chemical and isotopic data recovered from marine sediments and sedimentary rocks, together with biotic information, provide us with the best means of understanding the significance of OAEs and their place in the evolution of the Earth system. We present new Mo- and Os-isotope and geochemical data from OAE 1a (early Cretaceous), which help define how this event evolved in relation to the other major environmental parameters - including global warming, continental weathering and Ontong-Java volcanism - of that time. We compare these new observations with published results from other Mesozoic OAEs and the PETM. Recently published Os-isotope data from DSDP site 463 (mid-Pacific) [1] and northern Italy [1, 2] show that the Os budget of the oceans was dominated for a period of c. 880 ka during OAE 1a by the hydrothermal flux of unradiogenic Os from the Ontong-Java province. The observation of identical Os-isotope compositions at these two very distant sites indicates that seawater was well mixed at that time. Over the same interval, the seawater Mo-isotope composition, based upon well-preserved samples from Italy, was persistently atypical, with δ98/95Mo ranging between -0.7 and +0.7 permil [3]. All the samples analysed here accumulated under highly anoxic conditions and contain highly abundant

  14. Internal load management in eutrophic, anoxic environments. The role of natural zeolite.

    NASA Astrophysics Data System (ADS)

    Gianni, Areti; Zacharias, Ierotheos

    2015-04-01

    During the last decades, the increase of the nutrient and organic load inflows in the coastal zone increased the number of the anoxic environments. Inputs' control constitutes one of the basic practices for the eutrophic/anoxic aquatic ecosystems management. However, the induced changes at the ecosystem characteristics resulting from the trophic state alteration, and anoxic conditions prevalence, render the ecosystem's restoration difficult if not impossible. Bottom water anoxia accelerates PO43-, NH4+ and S2- recycling and accumulation from organic matter decomposition. This, toxic layer is a permanent menace for the balance of the entire ecosystem, as it can supply PO43-, NH4+ and S2- to the surface layers altering their qualitative character and threatening the welfare of fishes and other aquatic organisms. Having as objective the water basins' internal load control and based on practices are used in eutrophic environments' restoration, this study is referred to the role of the natural zeolite in eutrophic/anoxic ecosystems management. For the first time are presented, results from S2- removal experiments using the zeolitic mineral mordenite, [(Na2, Ca, K2)4 (H2O)28] [Al8Si40O96]. Four different sets of experiments were conducted, in order to examine zeolite's removal capacity of S2- in aquatic solutions, under a wide range of physicochemical parameters. More specific: a) the effect of initial pH on the removal process, b) the removal process kinetics, c) the removal process isotherms and d) the effect of salinity on the removal process were studied. Natural zeolite has the ability to neutralize the pH of aqueous solutions, thus all the experiments were practically performed at pH 7. Initially sulfides concentration range from 1 to 10mg/l. Zeolite's removal capability appeared to be directly depended on the S2- initial concentration. For initial concentration of 1mg/l, the removal rate reached up to 90% after 24h. The maximum zeolite removal capacity was

  15. The Cenomanian-Turonian oceanic anoxic event in Tibet, a real anoxic condition? Clues from Phosphorus, Carbon and Traces Elements accumulations.

    NASA Astrophysics Data System (ADS)

    Bomou, B.; Adatte, T.; Föllmi, K. B.; Caron, M.; Tantawy, A. A.; Fleitmann, D.; Matera, V.; Huang, Y.

    2009-04-01

    The Cenomanian-Turonian boundary is marked by an Oceanic Anoxic Event (OAE 2) characterized by finely laminated organic carbon rich sediments deposited under oxygen depleted conditions, coinciding with a positive shift in δ13C isotope excursion. The main goal of the present research is to get a better understanding of mechanisms which triggered these OAEs, and particularly the paleoenvironmental conditions which characterized the onset of that major anoxic event and their evolution. Mort (2007) demonstrated that the onset of the Cenomanian-Turonian OAE was triggered by a short-lived but significant increase in phosphorus burial. Then bottom waters became anoxic and switched from being a P sink to a P source, sustaining the productivity in a positive feedback loop. Increased aridity, removal of atmospheric CO2 by burial as organic carbon in black shales and reduction in nutrient availability may have been factors bringing about the return to more oxic oceans. However, Total Phosphorus (Ptot) and trace metals behaviour is not well known at larger scale, away from main black shales source (Western Tethys and Central Atlantic). It is especially interesting to see if P distribution will show a similar maximum predating the positive carbon excursion. We investigate therefore the section of Gongzha (Tibet, China) located at the north margin of the Indian plate in the Tethys Himalayas zone (SE Tethys). These sediments are deposited in open marine basin and slope settings under hemipelagic environment (Li et al., 2006). Clay analyses show that the sediments have been overprinted by burial diagenesis and tectonic processes, but the biostratigraphy by foraminifera and nannofossils, microfacies and carbon stable isotopes data indicate a quite good preservation and absence of significant hiatus. Carbon isotope analyses exhibit the classical C-T positive shift with a first peak near the end of R. cushmani zone, a second in the lower part of W. archaeocretacea zone, followed by

  16. Dynamic anoxic ferruginous conditions during the end-Permian mass extinction and recovery.

    PubMed

    Clarkson, M O; Wood, R A; Poulton, S W; Richoz, S; Newton, R J; Kasemann, S A; Bowyer, F; Krystyn, L

    2016-01-01

    The end-Permian mass extinction, ∼252 million years ago, is notable for a complex recovery period of ∼5 Myr. Widespread euxinic (anoxic and sulfidic) oceanic conditions have been proposed as both extinction mechanism and explanation for the protracted recovery period, yet the vertical distribution of anoxia in the water column and its temporal dynamics through this time period are poorly constrained. Here we utilize Fe-S-C systematics integrated with palaeontological observations to reconstruct a complete ocean redox history for the Late Permian to Early Triassic, using multiple sections across a shelf-to-basin transect on the Arabian Margin (Neo-Tethyan Ocean). In contrast to elsewhere, we show that anoxic non-sulfidic (ferruginous), rather than euxinic, conditions were prevalent in the Neo-Tethys. The Arabian Margin record demonstrates the repeated expansion of ferruginous conditions with the distal slope being the focus of anoxia at these times, as well as short-lived episodes of oxia that supported diverse biota. PMID:27433855

  17. Dynamic anoxic ferruginous conditions during the end-Permian mass extinction and recovery

    NASA Astrophysics Data System (ADS)

    Clarkson, M. O.; Wood, R. A.; Poulton, S. W.; Richoz, S.; Newton, R. J.; Kasemann, S. A.; Bowyer, F.; Krystyn, L.

    2016-07-01

    The end-Permian mass extinction, ~252 million years ago, is notable for a complex recovery period of ~5 Myr. Widespread euxinic (anoxic and sulfidic) oceanic conditions have been proposed as both extinction mechanism and explanation for the protracted recovery period, yet the vertical distribution of anoxia in the water column and its temporal dynamics through this time period are poorly constrained. Here we utilize Fe-S-C systematics integrated with palaeontological observations to reconstruct a complete ocean redox history for the Late Permian to Early Triassic, using multiple sections across a shelf-to-basin transect on the Arabian Margin (Neo-Tethyan Ocean). In contrast to elsewhere, we show that anoxic non-sulfidic (ferruginous), rather than euxinic, conditions were prevalent in the Neo-Tethys. The Arabian Margin record demonstrates the repeated expansion of ferruginous conditions with the distal slope being the focus of anoxia at these times, as well as short-lived episodes of oxia that supported diverse biota.

  18. Nitrogen losses in anoxic marine sediments driven by Thioploca-anammox bacterial consortia.

    PubMed

    Prokopenko, M G; Hirst, M B; De Brabandere, L; Lawrence, D J P; Berelson, W M; Granger, J; Chang, B X; Dawson, S; Crane, E J; Chong, L; Thamdrup, B; Townsend-Small, A; Sigman, D M

    2013-08-01

    Ninety per cent of marine organic matter burial occurs in continental margin sediments, where a substantial fraction of organic carbon escapes oxidation and enters long-term geologic storage within sedimentary rocks. In such environments, microbial metabolism is limited by the diffusive supply of electron acceptors. One strategy to optimize energy yields in a resource-limited habitat is symbiotic metabolite exchange among microbial associations. Thermodynamic and geochemical considerations indicate that microbial co-metabolisms are likely to play a critical part in sedimentary organic carbon cycling. Yet only one association, between methanotrophic archaea and sulphate-reducing bacteria, has been demonstrated in marine sediments in situ, and little is known of the role of microbial symbiotic interactions in other sedimentary biogeochemical cycles. Here we report in situ molecular and incubation-based evidence for a novel symbiotic consortium between two chemolithotrophic bacteria--anaerobic ammonium-oxidizing (anammox) bacteria and the nitrate-sequestering sulphur-oxidizing Thioploca species--in anoxic sediments of the Soledad basin at the Mexican Pacific margin. A mass balance of benthic solute fluxes and the corresponding nitrogen isotope composition of nitrate and ammonium fluxes indicate that anammox bacteria rely on Thioploca species for the supply of metabolic substrates and account for about 57 ± 21 per cent of the total benthic N2 production. We show that Thioploca-anammox symbiosis intensifies benthic fixed nitrogen losses in anoxic sediments, bypassing diffusion-imposed limitations by efficiently coupling the carbon, nitrogen and sulphur cycles. PMID:23925243

  19. Dynamic anoxic ferruginous conditions during the end-Permian mass extinction and recovery

    PubMed Central

    Clarkson, M. O.; Wood, R. A.; Poulton, S. W.; Richoz, S.; Newton, R. J.; Kasemann, S. A.; Bowyer, F.; Krystyn, L.

    2016-01-01

    The end-Permian mass extinction, ∼252 million years ago, is notable for a complex recovery period of ∼5 Myr. Widespread euxinic (anoxic and sulfidic) oceanic conditions have been proposed as both extinction mechanism and explanation for the protracted recovery period, yet the vertical distribution of anoxia in the water column and its temporal dynamics through this time period are poorly constrained. Here we utilize Fe–S–C systematics integrated with palaeontological observations to reconstruct a complete ocean redox history for the Late Permian to Early Triassic, using multiple sections across a shelf-to-basin transect on the Arabian Margin (Neo-Tethyan Ocean). In contrast to elsewhere, we show that anoxic non-sulfidic (ferruginous), rather than euxinic, conditions were prevalent in the Neo-Tethys. The Arabian Margin record demonstrates the repeated expansion of ferruginous conditions with the distal slope being the focus of anoxia at these times, as well as short-lived episodes of oxia that supported diverse biota. PMID:27433855

  20. Expression profile of rice Hsp genes under anoxic stress.

    PubMed

    Mertz-Henning, L M; Pegoraro, C; Maia, L C; Venske, E; Rombaldi, C V; Costa de Oliveira, A

    2016-01-01

    Although flooding is one of the most important environmental stresses worldwide, not all plant species are intolerant to its effects. Species from semi-aquatic environments, such as rice, have the capacity to cope with flooding stress. Heat-shock proteins (Hsps) are thought to contribute to cellular homeostasis under both optimal and adverse growth conditions. Studies of gene expression in plants exposed to low levels of oxygen revealed the up-regulation of Hsp genes. However, it is not clear whether Hsp genes are transcribed as a function of tolerance or whether they represent a response to anoxic stress. Therefore, the accumulation of Hsp gene transcripts was investigated in two different cultivars, "Nipponbare" (flooding tolerant) and "IPSL 2070" (flooding sensitive), subjected to anoxic stress. Fifteen-day-old rice root seedlings from both cultivars were used. Four different treatments were performed: no anoxia (control); 24-h anoxia; 48-h anoxia; and 72-h anoxia. Anoxic stress was confirmed by the increased gene expression of alcohol dehydrogenase. The data obtained showed that both rice cultivars ("Nipponbare" and "IPSL 2070") accumulated Hsp gene transcripts under anoxic stress; however, the majority of the Hsp genes evaluated were responsive to anoxic stress in "IPSL 2070" (flooding sensitive), whereas in "Nipponbare" (flooding tolerant), only six genes were highly up-regulated. This suggests that although Hsps have an important role in the response to anoxia, they are not the major cause of tolerance. PMID:27173349

  1. Fallout plutonium in two oxic-anoxic environments

    SciTech Connect

    Sanchez, A.L.; Murray, J.W.; Schell, W.R.; Miller, L.G.

    1986-09-01

    The profiles of soluble fallout plutonium in two partially anoxic waters revealed minimum concentrations at the O/sub 2/-H/sub 2/S interface, indicating Pu removal onto particulate phases of Fe and other oxidized species that form during the redox cycle. In Saanich Inlet, an intermittently anoxic fjord in Vancouver Island, Canada, the concentration of soluble Pu in the anoxic zone was slightly less than in the oxygenated surface layer. In Soap Lake, a saline meromictic lake in eastern Washington State, Pu concentrations i the permanently anoxic zone were at least an order of magnitude higher than at the surface. Differences in the chemical characteristics of these two waters suggest important chemical species that influenced the observed Pu distribution. In the permanently anoxic zone of Soap Lake, high values of total alkalinity ranging from 940 to 1500 meq liter/sup -1/, sulfide species from 38 to 128 ..mu..M, dissolved organic carbon from 163 to 237 mg liter/sup -1/, and total dissolved solids from 80 to 140 ppt, all correlated with the observed high concentration of Pu. In Saanich Inlet, where total alkalinity ranged from 2.1 to 2.4 meq liter/sup -1/ and salinity from 25 to 32 per thousand and H/sub 2/S concentration in May 1981 showed a maximum of 8..mu..M, the observed Pu concentrations were significantly lower than for the Soap Lake monimolimnion.

  2. Microbial Community of a Hydrothermal Mud Vent Underneath the Deep-Sea Anoxic Brine Lake Urania (Eastern Mediterranean)

    NASA Astrophysics Data System (ADS)

    Yakimov, Michail M.; Giuliano, Laura; Cappello, Simone; Denaro, Renata; Golyshin, Peter N.

    2007-04-01

    The composition of a metabolically active prokaryotic community thriving in hydrothermal mud fluids of the deep-sea hypersaline anoxic Western Urania Basin was characterized using rRNA-based phylogenetic analysis of a clone library. The physiologically active prokaryotic assemblage in this extreme environment showed a great genetic diversity. Most members of the microbial community appeared to be affiliated to yet uncultured organisms from similar ecosystems, i.e., deep-sea hypersaline basins and hydrothermal vents. The bacterial clone library was dominated by phylotypes affiliated with the epsilon- Proteobacteria subdivision recognized as an ecologically significant group of bacteria inhabiting deep-sea hydrothermal environments. Almost 18% of all bacterial clones were related to delta- Proteobacteria, suggesting that sulfate reduction is one of the dominant metabolic processes occurring in warm mud fluids. The remaining bacterial phylotypes were related to alpha- and beta- Proteobacteria, Actinobacteria, Bacteroides, Deinococcus-Thermus, KB1 and OP-11 candidate divisions. Moreover, a novel monophyletic clade, deeply branched with unaffiliated 16S rDNA clones was also retrieved from deep-sea sediments and halocline of Urania Basin. Archaeal diversity was much lower and detected phylotypes included organisms affiliated exclusively with the Euryarchaeota. More than 96% of the archaeal clones belonged to the MSBL-1 candidate order recently found in hypersaline anoxic environments, such as endoevaporitic microbial mats, Mediterranean deep-sea mud volcanoes and anoxic basins. Two phylotypes, represented by single clones were related to uncultured groups DHVE-1 and ANME-1. Thus, the hydrothermal mud of hypersaline Urania Basin seems to contain new microbial diversity. The prokaryotic community was significantly different from that occurring in the upper layers of the Urania Basin since 60% of all bacterial and 40% of all archaeal phylotypes were obtained only from mud

  3. The early Toarcian anoxic event: what the beginning and the end of the story are?

    NASA Astrophysics Data System (ADS)

    Mattioli, Emanuela; Plancq, Julien; Raucsik, Béla

    2010-05-01

    The early Toarcian anoxic event: what the beginning and the end of the story are? E. Mattioli (1), J. Plancq (1), and B. Rauksik (2) (1) UMR 5125 PEPS, CNRS, France; Université Lyon 1, Campus de la DOUA, Bâtiment Géode, 69622 Villeurbanne Cedex, France (emanuela.mattioli@univ-lyon1.fr) (2) Department of Earth and Environmental Sciences, University of Pannonia, Veszprém, Hungary The early Toarcian anoxic event (T-OAE) and the associated biotic crisis have received much attention in the last decade. However, the events forewarning the crisis as well as its aftermath are still poorly known. The T-OAE coincides with a prominent carbon isotope negative excursion (T-CIE) that is preceded by an excursion of similar intensity at the Pliensbachian-Toarcian boundary (Hesselbo et al., 2007). The onset of T-CIE occurred some 700 kyr later than the end of the Boundary-CIE (Suan et al., 2008a). This succession of events demonstrates that the T-OAE was a complex suite of environmental perturbations. In this work, we focused on calcareous nannofossil assemblages occurring in the Peniche section (Portugal) during the Boundary-CIE with the aim to understand if calcifying plankton reacted in a similar/different way to the two CIEs. Also, two sections and one borehole located along a W-E transect, along the NW-Tethyan shelf (in the Yorkshire coast, in the E Paris Basin, and in Mecsek Basin, respectively), were investigated to assess which way calcareous nannoplankton recovered after the crisis, and if the recovery was a synchronous event. The production by nannoplankton collapsed during the T-CIE, as demonstrated by the lowest absolute abundance of nannofossils measured in Peniche and other studied sites (Mattioli et al., 2008). Besides this nannofossil abundance decrease, also the size of the incertae sedis Schizosphaerella test was drastically reduced (Suan et al., 2008b). If a similar size decrease is also recorded during the Boundary-CIE, calcareous nannofossil abundances are

  4. Cretaceous and Tertiary palynology used in the geological understanding of the Maturin sub-basin, Venezuela

    SciTech Connect

    Paredes, I.; Fasola, A. )

    1991-03-01

    The use of palynology and micropaleontology, two biostratigraphic tools used at Intevep, S.A., have been of great help in the geological understanding during studies done on cores of the Maturin subbasin, a foreland type basin in Eastern Venezuela. Basically, the palynological work consisted of palynological and palynofacies analysis used to determine ages and to interpret the paleoenvironments of deposition in comparison with the interpretations obtained through sedimentological and micropaleontological studies. Palynomorph assemblages and palynofacies are shown for the quiescent Late Cretaceous, for the Tertiary in sequences that are not exactly dated and probably represent the first compressive movements in the basin, and for the Oligocene. In general, in these sequences it was possible to determine marine environments varying from near-shore to inner neritic, and also subaereal paleosols in the Cretaceous. The work highlights the importance of multidisciplinary studies in order to obtain interpretations more in accordance with reality.

  5. Aptian anoxia in the Pacific Basin

    SciTech Connect

    Sliter, W.V. )

    1989-10-01

    Marine strata of Aptian age in the Pacific Basin include two distinct levels that represent episodes during which sediments rich in organic carbon were deposited. Both episodes lasted less than 1 m.y., as revealed in strata deposited atop submerged topographic highs. One unusually widespread episode of early Aptian age ({approximately}117.5 Ma) correlates with coeval units in Europe and thus is analogous to the Cenomanian-Turonian oceanic anoxic event in its short duration and wide geographic extent. The second episode of late Aptian age ({approximately}116.5 Ma) is restricted to allochthonous pelagic deposits in the Franciscan Complex of California. These results support the concept of widespread and narrowly synchronous anoxic events. Further, they show that organic carbon deposition in the Pacific Basin took place in intermediate water oxygen-minimum zones and thus differed in the mode of deposition, and hence paleoceanography, from that in other middle Cretaceous ocean basins.

  6. IN-SITU BIOTRANSFORMATION OF CARBON TETRACHLORIDE UNDER ANOXIC CONDITIONS

    EPA Science Inventory

    This field and laboratory project evaluated the possibility of stimulating a native bacterial population to biotransform carbon tetrachloride (CT) under anoxic conditions. In addition,the transformation of 1,1,1-trichloroethane (TCA), Freon-11, and Freon-113 present as background...

  7. ENVIRONMENTAL FACTORS CORRELATED TO DICHLOROPHENOL DECHLORINATION IN ANOXIC FRESHWATER SEDIMENTS

    EPA Science Inventory

    The reductive dechlorination of three dichlorophenol DCP isomers was studied in anoxic sediments collected every other month for a year from five sites in one pond. everal physical, chemical and microbiological characteristics of the sediments also were determined to identify cor...

  8. Microbial sequestration of phosphorus in anoxic upwelling sediments

    NASA Astrophysics Data System (ADS)

    Goldhammer, Tobias; Brüchert, Volker; Ferdelman, Timothy G.; Zabel, Matthias

    2010-08-01

    Phosphorus is an essential nutrient for life. In the ocean, phosphorus burial regulates marine primary production. Phosphorus is removed from the ocean by sedimentation of organic matter, and the subsequent conversion of organic phosphorus to phosphate minerals such as apatite, and ultimately phosphorite deposits. Bacteria are thought to mediate these processes, but the mechanism of sequestration has remained unclear. Here, we present results from laboratory incubations in which we labelled organic-rich sediments from the Benguela upwelling system, Namibia, with a 33P-radiotracer, and tracked the fate of the phosphorus. We show that under both anoxic and oxic conditions, large sulphide-oxidizing bacteria accumulate 33P in their cells, and catalyse the nearly instantaneous conversion of phosphate to apatite. Apatite formation was greatest under anoxic conditions. Nutrient analyses of Namibian upwelling waters and sediments suggest that the rate of phosphate-to-apatite conversion beneath anoxic bottom waters exceeds the rate of phosphorus release during organic matter mineralization in the upper sediment layers. We suggest that bacterial apatite formation is a significant phosphorus sink under anoxic bottom-water conditions. Expanding oxygen minimum zones are projected in simulations of future climate change, potentially increasing sequestration of marine phosphate, and restricting marine productivity.

  9. Sulfur during the Transition from Anoxic to Oxic Atmospheres

    NASA Technical Reports Server (NTRS)

    Zahnle, Kevin; Catling, David; Claire, Mark

    2006-01-01

    The invention of oxygenic photosynthesis was likely accompanied by the introduction of large amounts of O2 and complementary reduced gases (chiefly CH4) into the atmosphere. To first approximation the venting of O2 and CH4 are stochiometrically linked. We therefore present a suite of numerical photochemical models that address the anoxic-oxic transition in an atmosphere driven by large linked inputs of biogenic 02 and CH4. We find in general that, in steady state, there are two solutions, one oxic and the other anoxic. The anoxic solution appears to be linearly stable. If volcanic SO2 fluxes are large, S disproportionates into oxidized (H2S04) and reduced (S8) exit channels. As elemental sulfur is insoluble it provides a means of preserving photochemical mass-independent fractionation (MIF). On the other hand, if the source of volcanic SO2 is smaller than today, all S can leave the atmosphere as S8. Under these conditions there would be no MIF signal. The oxic solution appears to be linearly unstable. In the oxic solutions S is invariably oxidized to sulfate, and the MIF signal would be absent. The transitional atmosphere is relatively unstable and is also the most photochemically active. Consequently it is the transitional atmosphere, not the oxic or anoxic atmospheres, that has the lowest CH4 levels and weakest greenhouse warming. As a practical matter we expect the transitional atmospheres to vary strongly in response to diurnal and seasonal biological forcing.

  10. Oceanic oxygenation events in the anoxic Ediacaran ocean.

    PubMed

    Sahoo, S K; Planavsky, N J; Jiang, G; Kendall, B; Owens, J D; Wang, X; Shi, X; Anbar, A D; Lyons, T W

    2016-09-01

    The ocean-atmosphere system is typically envisioned to have gone through a unidirectional oxygenation with significant oxygen increases in the earliest (ca. 635 Ma), middle (ca. 580 Ma), or late (ca. 560 Ma) Ediacaran Period. However, temporally discontinuous geochemical data and the patchy metazoan fossil record have been inadequate to chart the details of Ediacaran ocean oxygenation, raising fundamental debates about the timing of ocean oxygenation, its purported unidirectional rise, and its causal relationship, if any, with the evolution of early animal life. To better understand the Ediacaran ocean redox evolution, we have conducted a multi-proxy paleoredox study of a relatively continuous, deep-water section in South China that was paleogeographically connected with the open ocean. Iron speciation and pyrite morphology indicate locally euxinic (anoxic and sulfidic) environments throughout the Ediacaran in this section. In the same rocks, redox sensitive element enrichments and sulfur isotope data provide evidence for multiple oceanic oxygenation events (OOEs) in a predominantly anoxic global Ediacaran-early Cambrian ocean. This dynamic redox landscape contrasts with a recent view of a redox-static Ediacaran ocean without significant change in oxygen content. The duration of the Ediacaran OOEs may be comparable to those of the oceanic anoxic events (OAEs) in otherwise well-oxygenated Phanerozoic oceans. Anoxic events caused mass extinctions followed by fast recovery in biologically diversified Phanerozoic oceans. In contrast, oxygenation events in otherwise ecologically monotonous anoxic Ediacaran-early Cambrian oceans may have stimulated biotic innovations followed by prolonged evolutionary stasis. PMID:27027776

  11. AMPA receptors undergo channel arrest in the anoxic turtle cortex.

    PubMed

    Pamenter, Matthew Edward; Shin, Damian Seung-Ho; Buck, Leslie Thomas

    2008-02-01

    Without oxygen, all mammals suffer neuronal injury and excitotoxic cell death mediated by overactivation of the glutamatergic N-methyl-D-aspartate receptor (NMDAR). The western painted turtle can survive anoxia for months, and downregulation of NMDAR activity is thought to be neuroprotective during anoxia. NMDAR activity is related to the activity of another glutamate receptor, the alpha-amino-3-hydroxy-5-methylisoxazole-4-propionic acid receptor (AMPAR). AMPAR blockade is neuroprotective against anoxic insult in mammals, but the role of AMPARs in the turtle's anoxia tolerance has not been investigated. To determine whether AMPAR activity changes during hypoxia or anoxia in the turtle cortex, whole cell AMPAR currents, AMPAR-mediated excitatory postsynaptic potentials (EPSPs), and excitatory postsynaptic currents (EPSCs) were measured. The effect of AMPAR blockade on normoxic and anoxic NMDAR currents was also examined. During 60 min of normoxia, evoked peak AMPAR currents and the frequencies and amplitudes of EPSPs and EPSCs did not change. During anoxic perfusion, evoked AMPAR peak currents decreased 59.2 +/- 5.5 and 60.2 +/- 3.5% at 20 and 40 min, respectively. EPSP frequency (EPSP(f)) and amplitude decreased 28.7 +/- 6.4% and 13.2 +/- 1.7%, respectively, and EPSC(f) and amplitude decreased 50.7 +/- 5.1% and 51.3 +/- 4.7%, respectively. In contrast, hypoxic (Po(2) = 5%) AMPAR peak currents were potentiated 56.6 +/- 20.5 and 54.6 +/- 15.8% at 20 and 40 min, respectively. All changes were reversed by reoxygenation. AMPAR currents and EPSPs were abolished by 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX). In neurons pretreated with CNQX, anoxic NMDAR currents were reversibly depressed by 49.8 +/- 7.9%. These data suggest that AMPARs may undergo channel arrest in the anoxic turtle cortex. PMID:18056983

  12. Early Cretaceous High Arctic Magmatism and the Oceanic Anoxic Event 1a

    NASA Astrophysics Data System (ADS)

    Planke, Sverre; Polteau, Stephane; Faleide, Jan Inge; Svensen, Henrik; Myklebust, Reidun; Midtkandal, Ivar; Corfu, Fernando

    2014-05-01

    The High Arctic Large Igneous Province (HALIP) comprises Early and Late Cretaceous igneous deposits extending from the Canadian Arctic Archipelago in the west to the east Siberian Island in the east. It also includes anomalously thick igneous crust in the Canada Basin. We have mapped out the distribution of HALIP volcanic extrusive and intrusive rocks in the Barents Sea based on field work and borehole data in Svalbard and extensive geophysical data in the offshore areas. The volcanic extrusive and intrusive rocks in the Barents Sea Large Igneous Province (BLIP) are present in a 700 000 km2 large region extending across the northern and eastern Barents Sea. The igneous complex is dominated by a large sill complex intruded into organic-rich Jurassic to Permian age sequences in the East Barents Basin, on Svalbard and on Franz Josef Land. Geochemical data suggest that the tholeiitic igneous rocks were likely formed during a short-lived melting event. New geochronology data (U/Pb on zircons) suggest that the igneous event occurred in the Early Aptian or Barremian. Marine and terrestrial Cretaceous shales and sandstones of the Carolinefjellet, Helvetiafjellet, and Rurikfjellet formations have recently been cored in four boreholes on Svalbard (the Longyearbyen CO2 Laboratory). We have completed a comprehensive analytical program of samples from the boreholes, including geochronology (Ar/Ar and zircon U/Pb), biostratigraphy (palynology), and geochemistry (ICP-MS, RockEval, TOC). In the boreholes, the Barremian-early Aptian Helvetiafjellet Formation is overlaid by early Aptian sapropel-rich shales of the Carolinefjellet Formation. Carbon isotope data reveal a negative excursion in this anoxic interval, most likely representing the Oceanic Anoxic Event 1a (OAE1a). The geochronology data suggest that the intrusive BLIP volcanism occurred at the tim e of the early Aptian OAE1a. We propose that the link between the BLIP and the OAE1a is a massive release of thermogenic methane

  13. Witwatersrand gold deposits formed by volcanic rain, anoxic rivers and Archaean life

    NASA Astrophysics Data System (ADS)

    Heinrich, Christoph A.

    2015-03-01

    The Witwatersrand Basin in South Africa is one of the best-preserved records of fluvial sedimentation on an Archaean continent. The basin hosts the worlds biggest gold resource in thin pebble beds, but the process for gold enrichment is debated. Mechanical accumulation of gold particles from flowing river water is the prevailing hypothesis, yet there is evidence for hydrothermal mobilization of gold by fluids invading the metasedimentary rocks after their burial. Earth's atmosphere three billion years ago was oxygen free, but already sustained some of the oldest microbial life on land. Here I use thermodynamic modelling and mass-balance calculations to show that these conditions could have led to the chemical transport and precipitation of gold in anoxic surface waters, reconciling the evidence for fluvial deposition with evidence for hydrothermal-like chemical reactions. I suggest that the release of sulphurous gases from large volcanic eruptions created acid rain that enabled the dissolution and transport of gold in surface waters as sulphur complexes. Precipitation of the richest gold deposits could have been triggered by chemical reduction of the dissolved gold onto organic material in shallow lakes and pools. I conclude that the Witwatersrand gold could have formed only during the Archaean, after the emergence of continental life but before the rise of oxygen in the Earth's atmosphere.

  14. Water quality in the Withers Swash basin, with emphasis on enteric bacteria, Myrtle Beach, South Carolina, 1991-93. Water resources investigation

    SciTech Connect

    Guimaraes, W.B.

    1995-12-31

    The purpose of this report is to present data collected between 1991 and 1993 that characterizes the water quality of the Withers Swash Basin in Myrtle Beach, S.C. Data collected for this investigation reflect base- and high-flow water-quality sampling and intensive bacteria sampling. Specifically, the report includes discussions of the following data: (1) streamflow, (2) rainfall amounts, (3) values of physical properties, (4) inorganic constituent concentrations, and (5) organic compound concentrations. The report also extensively discusses results of a large-scale sampling effort for documentation of enteric bacteria counts in the Withers Swash Basin and the near-shore Atlantic Ocean. A discussion of the best management practices that reduce nonpoint-source pollution in the basin also is included.

  15. Heterogeneous oxygenation states in the Atlantic and Tethys oceans during Oceanic Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    Westermann, Stéphane; Vance, Derek; Cameron, Vyllinniskii; Archer, Corey; Robinson, Stuart A.

    2014-10-01

    The Cenomanian-Turonian boundary (ca. 93.5 Ma) is marked by an episode of profound environmental change, including a major perturbation of the carbon cycle and an Oceanic Anoxic Event (OAE-2). Here, we present molybdenum (Mo) isotope variations within the OAE-2 interval for four sections from the western Tethys (Furlo and La Contessa) and the North-Atlantic (ODP site 1276 and DSDP site 367). The main target of this study is to investigate the extent of reducing conditions (truly global in extent or restricted to poorly-ventilated restricted deep basins), with particular reference to the relationship between the change in the oxygenation state of the ocean and the link to global perturbations of the carbon cycle recorded in carbon isotopes. All four sections show fluctuations in the redox sensitive trace metal (RSTE) distribution, suggesting rapid variations in local redox conditions, ranging from anoxic to euxinic. The RSTE enrichment factors (EFs) also suggest different depositional conditions and paleoceanographic processes in the western Tethys versus the North Atlantic. Whereas the North Atlantic sites show evidence of weak watermass restriction associated with the action of a particulate shuttle within the water column, the EFs of the Tethyan sections are characteristic of unrestricted marine systems. Mo isotopes show surprisingly negative values through the Tethyan sections. At the onset of OAE-2, an increasing trend in δMo98 is observed, with values ranging from -0.6 to 0.6‰. During the second half of OAE-2, the δMo98 curve shows a progressive shift towards more negative values. In the North Atlantic, δMo98 signatures from ODP site 1276 show a similar behaviour as observed in the western Tethys. At DSDP site 367, Mo isotopes are generally heavier during OAE-2, fluctuating around an average value of 1.1‰. This is consistent with fully euxinic conditions and the black shales deposited may have recorded the seawater signature during OAE-2. The Mo isotope

  16. Geochemical and anthropogenic enrichments of Mo in sediments from perennially oxic and seasonally anoxic lakes in Eastern Canada

    NASA Astrophysics Data System (ADS)

    Chappaz, Anthony; Gobeil, Charles; Tessier, André

    2008-01-01

    We measured the vertical distributions of Mo, Fe, Mn, sulfide, sulfate, organic carbon, major ions, and pH in sediment porewater from one perennially oxic and three seasonally anoxic lacustrine basins in Eastern Canada, as well as those of Mo, acid volatile sulfide, Fe, Mn, Al, organic C, 210Pb and 137Cs in sediment cores from the same sites. The only input of anthropogenic Mo to these lakes comes from atmospheric deposition. The relatively monotonous distribution of Mo in the porewater of three seasonally anoxic basins suggests that Mo is not redistributed in the sedimentary column during periods of anoxia. In contrast, porewater Mo profiles obtained at three sampling dates in a perennially oxic basin display sharp Mo peaks below the sediment-water interface, indicating redistribution subsequent to deposition. Modeling of these latter porewater Mo profiles with a diagenetic reaction-transport equation coupled to comparisons among the various porewater and solid phase profiles reveal that Mo is released at 1-2 cm depth as a consequence of the reductive dissolution of Fe oxyhydroxides and scavenged both at the vicinity of the sediment-water interface, by re-adsorption onto authigenic Fe oxyhydroxides, and deeper in the sediments where dissolved sulfide concentrations are higher. The estimated rate constant for the adsorption of Mo onto Fe oxyhydroxides is 36 ± 45 cm 3 mol -1 s -1. Diagenetic modeling indicates that authigenic Mo in sediments of the perennially oxic basin represents about one-third of the total solid phase Mo in the first cm below the sediment-water interface and only one tenth below this horizon. If we assume that no authigenic Mo is accumulated in the seasonally anoxic lake sediments we conclude that the sediment Mo concentrations, which are up to 3-16 times higher than the average lithogenic composition, depending on the lake, are mainly due to atmospheric deposition of anthropogenic Mo and not to the formation of authigenic Mo phases

  17. Rapid changes in the redox conditions of the western Tethys Ocean during the early Aptian oceanic anoxic event

    NASA Astrophysics Data System (ADS)

    Westermann, Stéphane; Stein, Melody; Matera, Virginie; Fiet, Nicolas; Fleitmann, Dominik; Adatte, Thierry; Föllmi, Karl B.

    2013-11-01

    The early Aptian (125 to 121 Ma) records an episode of severe environmental change including a major perturbation of the carbon cycle, an oceanic anoxic event (OAE 1a, 122.5 Ma), a platform drowning episode and a biocalcification crisis. We propose to trace changes in the oxygenation state of the ocean during the early Aptian anoxic event using the redox-sensitive trace-element (RSTE) distribution, phosphorus accumulation rates (PARs) and organic-matter characterization in three different basins of the western Tethys. The following sections have been investigated: Gorgo a Cerbara (central Italy) in the Umbria Marche basin, Glaise (SE France) in the Vocontian basin and Cassis/La Bédoule (SE France) located in the Provencal basin. In the Gorgo a Cerbara section, RSTE distributions show a low background level along the main part of the section, contrasted by different maxima in concentrations within the Selli level. In the Glaise section, the Goguel level displays a weak increase in RSTE contents coeval with moderate TOC values. At Cassis/La Bédoule, no significant RSTE enrichments have been observed in sediments equivalent to the Selli level. These differences in the records of the geochemical proxies of the Selli level or its equivalent indicate the deposition under different redox conditions, probably related to the paleogeography. Our data indicate the development of anoxic-euxinic conditions in the deeper part of the Tethys during OAE 1a, whereas in the shallower environments, conditions were less reducing. Moreover, at Gorgo a Cerbara, the Selli level is characterized by rapid changes in the intensity of reducing conditions in the water column. Ocean eutrophication seems to be a major factor in the development and the persistence of anoxia as suggested by the PAR evolution. Higher PAR values at the onset of OAE 1a suggest an increase in nutrient input, whereas the return to lower values through the first part of the OAE 1a interval may be related to the

  18. Biomarker changes across the Toarcian (early Jurassic) ocean anoxic event

    NASA Astrophysics Data System (ADS)

    Cohen, A. M.; Grocke, D. R.; Grosjean, E.; Summons, R. E.; Rothman, D. H.

    2004-12-01

    The Early Toarcian oceanic anoxic event (in the Jurassic, about 183 million years ago) is marked by the global distribution of black shales rich in organic carbon. It is recorded in the geochemical record with high concentrations of organic carbon and isotopic excursions in carbonate carbon, organic carbon and nitrogen. Although there are many hypotheses regarding this anoxic event, its causes and consequences are still not well understood. Here we investigate the evolution of molecular fossils, or biomarkers, across the Toarcian ocean anoxic event in order to elucidate the dynamics of interactions within the carbon cycle during this time. The biomarkers of thirteen samples which span the bulk organic carbon isotopic excursion are studied in detail. To infer the interaction between the primary and secondary reservoirs of oceanic organic carbon, we have analysed time series of isoprenoid (pristane and phytane) and n-alkane (n-C17 and n-C18) isotopic compositions. In addition to the isotopic analyses, we trace the evolution of distributions of all hydrocarbon biomarkers. Samples are from the high-resolution and well-studied Hawsker Bottoms section. Preliminary results show that the isotopes of pristane and phytane and the n-alkanes do not trace the negative excursion of bulk δ 13Corg. In addition, there is a change in isotopic ordering between the n-alkanes and the isoprenoids.

  19. Sedimentological, Magnetic and Geochemical Proxies for Holocene Climate Change and Paleoseismology from Marine Anoxic Inlet Sediments

    NASA Astrophysics Data System (ADS)

    Enkin, R. J.; Dallimore, A.; Baker, J.; Ivanochko, T.; Chang, A. S.

    2009-05-01

    Sediments deposited in anoxic basins are not bioturbated and thus hold high temporal resolution proxy recordings of climate and other physical controls. This paper focuses on the inner basin of Effingham Inlet on the west coast of Vancouver Island, Canada, a 120m deep fiord basin restricted from the open ocean by a 46m deep sill. Fifteen years of oceanographic monitoring have helped establish the physical and sedimentary processes at play. Freeze cores, piston cores, and especially the 40 m long MD02-2494 core hold a15 ka record of Late Pleistocene deglaciation, relative sea level change, Holocene climate and paleoseismology, revealed by sedimentological, magnetic and geochemical analysis. The age model is established using terrestrial 14C dates complemented by varve counting and paleomagnetic secular variation correlations. Annual laminations are formed of spring/summer diatom deposits following algal blooms and dominantly- winter deposits of clastics. These sediments provide proxies of Holocene weather with annual resolution. There are several episodes of rapid regime change from high seasonality warm climate to low seasonality wet-cold climate. Interspersed with the the annual laminations, there are two types of massive deposits: "homogenites" formed by remixing of suspended sediments by bottom-hugging currents, and "seismites" formed by mass wasting events associated with ground shaking. Magnetically, both the laminations and homogenites feature similar single-domain magnetic grains, while the seismites feature larger magnetic grains with multi-domain signatures, thus providing a simple tool for distinguishing the two visually similar deposit types. Homogenites, which result from La Nina-like oceanic conditions, first appear in core MD02- 2494 approximately 8 ka and have been increasing in frequency ever since.

  20. Uranium geochemistry of Orca Basin

    NASA Astrophysics Data System (ADS)

    Weber, F. F., Jr.; Sackett, W. M.

    1981-08-01

    Orca Basin, an anoxic, brine-filled depression at a depth of 2200 m in the Northwestern Gulf of Mexico continental slope, has been studied with respect to its uranium geochemistry. Uranium concentration profiles for four cores from within the basin were determined by delayed-neutron counting. Uranium concentrations ranged from 2.1 to 4.1 ppm on a salt-free and carbonate-corrected basis. The highest uranium concentrations were associated with the lowest percentage and δ 13C organic carbon values. For comparison, cores frm the brine-filled Suakin and Atlantis II Deeps, both in the Red Sea, were also analyzed. Uranium concentrations ranged from 1.2 to 2.6 ppm in the Suakin Deep and from 8.0 to 11.0 ppm in the Atlantis II Deep. No significant correlation was found between uranium concentrations and organic carbon concentrations and δ 13C values for these cores. Although anoxic conditions are necessary for significant uranium uptake by non-carbonate marine sediments, other factors such as dilution by rapidly depositing materials and uranium supply via mixing and diffusion across density gradients may be as important in determining uranium concentrations in hypersaline basin sediments.

  1. Natural attenuation potential of phenylarsenicals in anoxic groundwaters.

    PubMed

    Hempel, Michael; Daus, Birgit; Vogt, Carsten; Weiss, Holger

    2009-09-15

    The extensive production of chemical warfare agents in the 20th century has led to serious contamination of soil and groundwater with phenyl arsenicals at former ammunition depots or warfare agent production sites worldwide. Most phenyl arsenicals are highly toxic for humans. The microbial degradation of phenylarsonic acid (PAA) and diphenylarsinic acid (DPAA) was investigated in microcosms made of anoxic groundwater/sediment mixtures taken from different depths of an anoxic, phenyl arsenical contaminated aquifer in Central Germany. DPAA was not transformed within 91 days incubation time in any of the microcosms. The removal of PAA can be described by a first order kinetics without a lag-phase (rate: 0.037 d(-1)). In sterilized microcosms, PAA concentrations always remained stable, demonstrating that PAA transformation was a biologically mediated process. PAA transformation occurred under sulfate-reducing conditions due to sulfate consumption and production of sulfide. The addition of lactate (1 mM), a typical substrate of sulfate-reducing bacteria, increased the transformation rate of PAA significantly up to 0.134 d(-1). The content of total arsenic was considerably reduced (> 75%). Intermediates of PAA transformation were detected by high performance liquid chromatography-inductively coupled plasma mass spectrometry (HPLC-ICP-MS). Experiments with a pure strain and sterile controls of Desulfovibrio gigas spiked with PAA showed that the elimination process is linked to the presence of sulfide formed through bacterial activity. Phenyl arsenicals were likely immobilized in the sedimentthrough sulfur substitution and a subsequent sulfur bond under the prevailing sulfate reducing condition. The results of this study indicate that PAA can undergo microbiologically mediated transformation in anoxic aquifers, leading to reduced concentrations in groundwater, which indicate a (enhancend) natural attenuation potential. PMID:19806732

  2. Anaerobes into heavy metal: Dissimilatory metal reduction in anoxic environments

    USGS Publications Warehouse

    Lovley, D.R.

    1993-01-01

    Within the last decade, a novel form of microbial metabolism of major environmental significance has been elucidated. In this process, known as dissimilatory metal reduction, specialized microorganisms, living in anoxic aquatic sediments and ground water, oxidize organic compounds to carbon dioxide with metals serving as the oxidant. Recent studies have demonstrated that this metabolism explains a number of important geochemical phenomena in ancient and modern sedimentary environments, affecting not only the cycling of metals but also the fate of organic matter. Furthermore, this metabolism may have practical application in remediation of environments contaminated with toxic metals and/or organics.

  3. Decoupling of the Carbon Cycle during Ocean Anoxic Event-2

    NASA Astrophysics Data System (ADS)

    Eldrett, J.; Bergman, S. C.; Minisini, D.

    2013-12-01

    The Cenomanian to Turonian Boundary transition (95-93 Ma) represents one of the most profound global perturbations in the carbon cycle of the last 140 million years. This interval is characterized by widespread deposition of organic-rich fine-grained sediment marked by a globally recognised positive carbon isotope excursion (CIE) reflecting the widespread removal of 12C-enriched organic matter in marine sediments under global anoxic conditions. However, the exact timing and trigger of this inferred global phenomenon, termed Oceanic Anoxic Event-2 is still debated, with recent studies showing diachroneity between the deposition of the organic-rich sediment and the CIE, and conflicting interpretations on detailed redox analyses in several of these inferred anoxic settings. Here we present the first evidence for widespread and persistent oxygenation during OAE-2 based primarily on the distribution of redox-sensitive trace metals preserved in sediments from the Eagle Ford Formation, Western Interior Seaway of North America. We generated a δ13C curve which indicates an earlier initiation of the CIE in Texas compared to the Global Stratotype and Point Section at Pueblo, Colorado. Our data also indicate anoxic-euxinic conditions in the mid-late Cenomanian, but improved bottom-water oxygenation prior to and during the CIE, corroborated by increased bioturbation, abundance of benthic foraminifera and reduced total organic carbon values. Trace metal enrichments support large volumes of mafic volcanism possibly from the High Arctic Large Igneous Province (LIP), which occur during peak bottom-water oxygenation and a plateau in δ13Corg values and does not immediately precede the Cenomanian-Turonian CIE, as previously stated. This suggests that the emplacement of a LIP was not the primary trigger of the OAE-2 event. It is also unlikely that bottom-water oxygenation was promoted by the introduction of volcanogenic Fe inhibiting sulfate reduction, as the depletion in redox

  4. Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments

    PubMed Central

    Yanagawa, Katsunori; Tani, Atsushi; Yamamoto, Naoya; Hachikubo, Akihiro; Kano, Akihiro; Matsumoto, Ryo; Suzuki, Yohey

    2016-01-01

    The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxidation to CO2 surpassed methanol assimilation and methanogenesis from CO2/H2 and methanol. Nevertheless, a significant decrease in methanol was not observed after the incubation, and this was attributed to the microbial production of methanol in parallel with its consumption. These results suggest that microbial reactions play an important role in the sources and sinks of methanol in subseafloor sediments. PMID:27301420

  5. Mixing between oxic and anoxic waters of the Black Sea as traced by Chernobyl cesium isotopes. (Reannouncement with new availability information). Technical report

    SciTech Connect

    Buesseler, K.O.; Livingston, H.D.; Casso, S.A.

    1991-12-31

    The Chernobyl nuclear power station accident in 1986 released readily measureable quantities of fallout 134 Cs and 137 Cs to Black Sea surface waters. This pulse-like input of tracers can be used to follow the physical mixing of the surface oxic waters, now labeled with the Chernobyl tracers, and the deeper anoxic waters, which were initially Chernobyl free. By 1988, there is clear evidence of Chernobyl Cs penetration below the oxic/anoxic interface at deep water stations in the western and eastern basins of the Black Sea. This rapid penetration of surface waters across the pycnocline cannot be explained by vertical mixing processes alone. Data from profiles at the mouth of the Bosporus suggest that significant ventilation of intermediate depths can occur as the outflowing Black Sea waters are entrained with the inflowing Mediterranean waters. forming a sub-surface water mass which is recognized by its surface water characteristics, i.e. initially a relatively high oxygen content and Chernobyl Cs signal. The lateral propagation of this signal along isopycnals into the basin interior would provide a rapid and effective mechanism for ventilating intermediate depths of the Black Sea. This process could also account for the lateral injection of resuspended margin sediments into the basin interior. The temperature and salinity data suggest that the entrainment process occurs at depths of 50-80 m, mixing waters from the Cold Intermediate Layer with the incoming, denser Mediterranean waters.

  6. Microbiological reduction of Sb(V) in anoxic freshwater sediments.

    PubMed

    Kulp, Thomas R; Miller, Laurence G; Braiotta, Franco; Webb, Samuel M; Kocar, Benjamin D; Blum, Jodi S; Oremland, Ronald S

    2014-01-01

    Microbiological reduction of millimolar concentrations of Sb(V) to Sb(III) was observed in anoxic sediments from two freshwater settings: (1) a Sb- and As-contaminated mine site (Stibnite Mine) in central Idaho and 2) an uncontaminated suburban lake (Searsville Lake) in the San Francisco Bay Area. Rates of Sb(V) reduction in anoxic sediment microcosms and enrichment cultures were enhanced by amendment with lactate or acetate as electron donors but not by H2, and no reduction occurred in sterilized controls. Addition of 2-(14)C-acetate to Stibnite Mine microcosms resulted in the production of (14)CO2 coupled to Sb(V) reduction, suggesting that this process proceeds by a dissimilatory respiratory pathway in those sediments. Antimony(V) reduction in Searsville Lake sediments was not coupled to acetate mineralization and may be associated with Sb-resistance. The microcosms and enrichment cultures also reduced sulfate, and the precipitation of insoluble Sb(III)-sulfide complexes was a major sink for reduced Sb. The reduction of Sb(V) by Stibnite Mine sediments was inhibited by As(V), suggesting that As(V) is a preferred electron acceptor for the indigenous community. These findings indicate a novel pathway for anaerobic microbiological respiration and suggest that communities capable of reducing high concentrations of Sb(V) commonly occur naturally in the environment. PMID:24274659

  7. Novel kingdom-level eukaryotic diversity in anoxic environments

    PubMed Central

    Dawson, Scott C.; Pace, Norman R.

    2002-01-01

    Molecular evolutionary studies of eukaryotes have relied on a sparse collection of gene sequences that do not represent the full range of eukaryotic diversity in nature. Anaerobic microbes, particularly, have had little representation in phylogenetic studies. Such organisms are the least known of eukaryotes and probably are the most phylogenetically diverse. To provide fresh perspective on the natural diversity of eukaryotes in anoxic environments and also to discover novel sequences for evolutionary studies, we conducted a cultivation-independent, molecular phylogenetic survey of three anoxic sediments, including both freshwater and marine samples. Many previously unrecognized eukaryotes were identified, including representatives of seven lineages that are not specifically related to any known organisms at the kingdom-level and branch below the eukaryotic “crown” radiation of animals, plants, fungi, stramenopiles, etc. The survey additionally identified new sequences characteristic of known ecologically important eukaryotic groups with anaerobic members. Phylogenetic analyses with the new sequences enhance our understanding of the diversity and pattern of eukaryotic evolution. PMID:12060775

  8. H2 cycling and microbial bioenergetics in anoxic sediments

    NASA Technical Reports Server (NTRS)

    Hoehler, Tori M.; DeVincenzi, Donald (Technical Monitor)

    2001-01-01

    The simple biochemistry of H2 is central to a large number of microbial processes, affecting the interaction of organisms with each other and with the environment. In anoxic sediments, the great majority of microbial redox processes involve H2 as a reactant, product, or potential by-product, and the thermodynamics of these processes are thus highly sensitive to fluctuations in environmental H2 concentrations. In turn, H2 concentrations are controlled by the activity of H2-consuming microorganisms, which efficiently utilize this substrate down to levels which correspond to their bioenergetic limitations. Consequently, any environmental change which impacts the thermodynamics of H2-consuming organisms is mirrored by a corresponding change in H2 concentrations. This phenomenon is illustrated in anoxic sediments from Cape Lookout Bight, NC, USA: H2 concentrations are controlled by a suite of environmental parameters (e.g., temperature, sulfate concentrations) in a fashion which can be quantitatively described by a simple thermodynamic model. These findings allow us to calculate the apparent minimum quantity of biologically useful energy in situ. We find that sulfate reducing bacteria are not active at energy yields below -18 kJ per mole sulfate, while methanogenic archaea exhibit a minimum close to -10 kJ per mole methane.

  9. Anaerobic animals from an ancient, anoxic ecological niche

    PubMed Central

    2010-01-01

    Tiny marine animals that complete their life cycle in the total absence of light and oxygen are reported by Roberto Danovaro and colleagues in this issue of BMC Biology. These fascinating animals are new members of the phylum Loricifera and possess mitochondria that in electron micrographs look very much like hydrogenosomes, the H2-producing mitochondria found among several unicellular eukaryotic lineages. The discovery of metazoan life in a permanently anoxic and sulphidic environment provides a glimpse of what a good part of Earth's past ecology might have been like in 'Canfield oceans', before the rise of deep marine oxygen levels and the appearance of the first large animals in the fossil record roughly 550-600 million years ago. The findings underscore the evolutionary significance of anaerobic deep sea environments and the anaerobic lifestyle among mitochondrion-bearing cells. They also testify that a fuller understanding of eukaryotic and metazoan evolution will come from the study of modern anoxic and hypoxic habitats. PMID:20370917

  10. Microbiological reduction of Sb(V) in anoxic freshwater sediments

    USGS Publications Warehouse

    Oremland, Ronald S.; Kulp, Thomas R.; Miller, Laurence G.; Braiotta, Franco; Webb, Samuel M.; Kocar, Benjamin D; Blum, Jodi S.

    2013-01-01

    Microbiological reduction of millimolar concentrations of Sb(V) to Sb(III) was observed in anoxic sediments from two freshwater settings: (1) a Sb- and As-contaminated mine site (Stibnite Mine) in central Idaho and 2) an uncontaminated suburban lake (Searsville Lake) in the San Francisco Bay Area. Rates of Sb(V) reduction in anoxic sediment microcosms and enrichment cultures were enhanced by amendment with lactate or acetate as electron donors but not by H2, and no reduction occurred in sterilized controls. Addition of 2-14C-acetate to Stibnite Mine microcosms resulted in the production of 14CO2 coupled to Sb(V) reduction, suggesting that this process proceeds by a dissimilatory respiratory pathway in those sediments. Antimony(V) reduction in Searsville Lake sediments was not coupled to acetate mineralization and may be associated with Sb-resistance. The microcosms and enrichment cultures also reduced sulfate, and the precipitation of insoluble Sb(III)-sulfide complexes was a major sink for reduced Sb. The reduction of Sb(V) by Stibnite Mine sediments was inhibited by As(V), suggesting that As(V) is a preferred electron acceptor for the indigenous community. These findings indicate a novel pathway for anaerobic microbiological respiration and suggest that communities capable of reducing high concentrations of Sb(V) commonly occur naturally in the environment.

  11. Kinetic and stoichiometric characterization of anoxic sulfide oxidation by SO-NR mixed cultures from anoxic biotrickling filters.

    PubMed

    Mora, Mabel; Fernández, Maikel; Gómez, José Manuel; Cantero, Domingo; Lafuente, Javier; Gamisans, Xavier; Gabriel, David

    2015-01-01

    Monitoring the biological activity in biotrickling filters is difficult since it implies estimating biomass concentration and its growth yield, which can hardly be measured in immobilized biomass systems. In this study, the characterization of a sulfide-oxidizing nitrate-reducing biomass obtained from an anoxic biotrickling filter was performed through the application of respirometric and titrimetric techniques. Previously, the biomass was maintained in a continuous stirred tank reactor under steady-state conditions resulting in a growth yield of 0.328 ± 0.045 g VSS/g S. To properly assess biological activity in respirometric tests, abiotic assays were conducted to characterize the stripping of CO2 and sulfide. The global mass transfer coefficient for both processes was estimated. Subsequently, different respirometric tests were performed: (1) to solve the stoichiometry related to the autotrophic denitrification of sulfide using either nitrate or nitrite as electron acceptors, (2) to evaluate the inhibition caused by nitrite and sulfide on sulfide oxidation, and (3) to propose, calibrate, and validate a kinetic model considering both electron acceptors in the overall anoxic biodesulfurization process. The kinetic model considered a Haldane-type equation to describe sulfide and nitrite inhibitions, a non-competitive inhibition to reflect the effect of sulfide on the elemental sulfur oxidation besides single-step denitrification since no nitrite was produced during the biological assays. PMID:24705508

  12. Influence of different anoxic time exposures on active biomass, protozoa and filamentous bacteria in activated sludge.

    PubMed

    Rodriguez-Perez, S; Fermoso, F G; Arnaiz, C

    2016-01-01

    Medium-sized wastewater treatment plants are considered too small to implement anaerobic digestion technologies and too large for extensive treatments. A promising option as a sewage sludge reduction method is the inclusion of anoxic time exposures. In the present study, three different anoxic time exposures of 12, 6 and 4 hours have been studied to reduce sewage sludge production. The best anoxic time exposure was observed under anoxic/oxic cycles of 6 hours, which reduced 29.63% of the biomass production compared with the oxic control conditions. The sludge under different anoxic time exposures, even with a lower active biomass concentration than the oxic control conditions, showed a much higher metabolic activity than the oxic control conditions. Microbiological results suggested that both protozoa density and abundance of filamentous bacteria decrease under anoxic time exposures compared to oxic control conditions. The anoxic time exposures 6/6 showed the highest reduction in both protozoa density, 37.5%, and abundance of filamentous bacteria, 41.1%, in comparison to the oxic control conditions. The groups of crawling ciliates, carnivorous ciliates and filamentous bacteria were highly influenced by the anoxic time exposures. Protozoa density and abundance of filamentous bacteria have been shown as promising bioindicators of biomass production reduction. PMID:27508364

  13. Transformation of Monoaromatic hydrocarbons to organic acids in anoxic groundwater environment

    USGS Publications Warehouse

    Cozzarelli, I.M.; Eganhouse, R.P.; Baedecker, M.J.

    1990-01-01

    The transformation of benzene and a series of alkylbenzenes was studied in anoxic groundwater of a shallow glacial-outwash aquifer near Bemidji, Minnesota, U.S.A. Monoaromatic hydrocarbons, the most water-soluble components of crude oil, were transported downgradient of an oil spill, forming a plume of contaminated groundwater. Organic acids that were not original components of the oil were identified in the anoxic groundwater. The highest concentrations of these oxidized organic compounds were found in the anoxic plume where a decrease in concentrations of structurally related alkylbenzenes was observed. These results suggest that biological transformation of benzene and alkylbenzenes to organic acid intermediates may be an important attenuation process in anoxic environments. The transformation of a complex mixture of hydrocarbons to a series of corresponding oxidation products in an anoxic subsurface environment provides new insight into in situ anaerobic degradation processes. ?? 1990 Springer-Verlag New York Inc.

  14. Superoxide metabolism is correlated to the post-anoxic injury of soybean (Glycine max) roots

    SciTech Connect

    Bolles, C.S.; Van Toai, T.T. )

    1990-05-01

    Post-anoxic injury of root tips of soybean seedlings is more severe following a very short (1 hour) period of anoxia than a longer (3-5 hour) period. Anaerobic incubation of root tips in the presence of 100 mM ascorbate, an antioxidant and free-radical-scavenging compound, alleviates the detrimental post-anoxia effects of a very short anoxic treatment. Extracts of root tips which have been treated anoxically for 1 hour have an elevated capacity to produce superoxide anions when subsequently exposed to air, than extracts from seedlings treated anoxically for longer time. Changes in superoxide dismutase (SOD) enzyme activity and SOD-specific RNA sequences will be presented. The results support that post-anoxic injury occurs in soybean roots and that SOD plays a role in the detoxification of superoxide anions.

  15. Evidence of anoxic methane oxidation coupled to denitrification.

    PubMed

    Islas-Lima, S; Thalasso, F; Gómez-Hernandez, J

    2004-01-01

    Denitrification using methane as sole electron donor under anoxic condition was investigated. Sludge produced by a denitrifying reactor using acetate as electron donor was put in contact with methane at partial pressures from 1.8 to 35.7kPa. Nitrate depletion and gaseous nitrogen production were measured. The denitrification rate was independent of the methane partial pressure when superior or equal to 8.8kPa. The nitrate depletion was asymptotic. A denitrification rate of 0.25g NO(3)(-)-Ng(-1) VSSd(-1) was observed at the onset of culturing, followed by a slower and lineal denitrification rate of 4.9x10(-3)g NO(3)(-)-Ng(-1) VSSd(-1). Abiotic nitrate removal or the availability of another carbon source were discarded from control experiments made in the absence of methane or using sterilized inoculum. PMID:14630098

  16. Denitrification kinetics in anoxic/aerobic activated sludge systems

    SciTech Connect

    Horne, G.M.

    1998-12-11

    Nitrogen removal needs at municipal wastewater treatment plants (WWTPs) have increased due to greater concerns about eutrophication and increased interest in reuse of treated municipal effluents. Biological processes are the most cost-effective method for nitrogen removal. Biological nitrogen removal is accomplished in two distinctly different processes by the conversion of nitrogen in the wastewater from organic nitrogen and ammonia to nitrate, followed by reduction of the nitrate to nitrogen gas. Nitrate production occurs in an aerobic activated sludge treatment zone during a process called nitrification. The nitrate is then converted through a series of intermediate steps to nitrogen gas in an anoxic zone (an anaerobic condition with nitrate present) during a process called denitrification, effectively removing the nitrogen from the wastewater. Many different WWTP designs have been developed to incorporate these two conditions for nitrogen removal.

  17. Neuropsychological profiles of six children with anoxic brain injury.

    PubMed

    Thaler, Nicholas S; Reger, Stacy L; Ringdahl, Erik N; Mayfield, Joan W; Goldstein, Gerald; Allen, Daniel N

    2013-09-01

    Anoxic brain injury (ABI) often results in severe memory impairment and other cognitive and behavioral deficits, although limited information is available regarding pediatric cases. This study reported the neuropsychological outcomes in six children and adolescents who sustained ABI. Profiles were compared by mechanism of injury (ischemic vs. hypoxemic) and three cases were evaluated more than once. Severe intellectual, attention, memory, and behavioral impairments were observed in all six cases although academic achievement, internalizing behavioral problems, and visuospatial deficits were in general less severe than other cognitive and behavioral deficits. The longitudinal case studies varied but showed steady increases in memory and intellectual performance in the younger children with strongest improvement in nonverbal abilities and little change in parent-reported behavior. This study raises several possible hypotheses about specific cognitive and behavioral outcomes observed in pediatric ABI. PMID:22731635

  18. Oxygen intrusion into anoxic fjords leads to increased methylmercury availability

    NASA Astrophysics Data System (ADS)

    Veiteberg Braaten, Hans Fredrik; Pakhomova, Svetlana; Yakushev, Evgeniy

    2013-04-01

    Mercury (Hg) appears in the oxic surface waters of the oceans at low levels (sub ng/L). Because inorganic Hg can be methylated into the toxic and bioaccumulative specie methylmercury (MeHg) levels can be high at the top of the marine food chain. Even though marine sea food is considered the main risk driver for MeHg exposure to people most research up to date has focused on Hg methylation processes in freshwater systems. This study identifies the mechanisms driving formation of MeHg during oxygen depletion in fjords, and shows how MeHg is made available in the surface water during oxygen intrusion. Studies of the biogeochemical structure in the water column of the Norwegian fjord Hunnbunn were performed in 2009, 2011 and 2012. In autumn of 2011 mixing flushing events were observed and lead to both positive and negative effects on the ecosystem state in the fjord. The oxygenated water intrusions lead to a decrease of the deep layer concentrations of hydrogen sulfide (H2S), ammonia and phosphate. On the other hand the intrusion also raised the H2S boundary from 8 m to a shallower depth of just 4 m. Following the intrusion was also observed an increase at shallower depths of nutrients combined with a decrease of pH. Before flushing events were observed concentrations of total Hg (TotHg) increased from 1.3 - 1.7 ng/L in the surface layer of the fjord to concentrations ranging from 5.2 ng/L to 6.4 ng/L in the anoxic zone. MeHg increased regularly from 0.04 ng/L in the surface water to a maximum concentration of 5.2 ng/L in the deeper layers. This corresponds to an amount of TotHg present as MeHg ranging from 2.1 % to 99 %. The higher concentrations of MeHg in the deeper layer corresponds to an area where no oxygen is present and concentrations of H2S exceeds 500 µM, suggesting a production of MeHg in the anoxic area as a result of sulphate reducing bacteria activity. After flushing the concentrations of TotHg showed a similar pattern ranging from 0.6 ng/L in the

  19. Cr Isotope Response to Ocean Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    Holmden, C. E.; Jacobson, A. D.; Sageman, B. B.; Hurtgen, M.

    2015-12-01

    The element Cr offers a redox sensitive isotopic proxy with potential for tracing past oxygen levels in the oceans. We examine this potential in a marine carbonate section deposited during Cretaceous Ocean Anoxic Event 2 (OAE 2) in the Western Interior Seaway, Colorado. Redox changes are the main source of Cr isotope fractionation in Earth surface environments. Cr(VI), in the form of the chromate oxyanion, is the thermodynamically favoured species in oxygenated seawater. Reduction of Cr(VI) causes light isotopes to partition into Cr(III), which is reactive and susceptible to removal into marine sediment. Therefore, widespread ocean anoxia should correlate with positive shifts in seawater chromate Cr isotope values (δ53Cr), assuming that all Cr input fluxes remained constant during the event. We find instead that inferred seawater δ53Cr values decreased during OAE 2. The minima of the sedimentary δ53Cr excursion coincides with the peak interval of anomalously enriched concentrations of Cr and other trace metals of basaltic affinity attributed to eruption of the Caribbean Large Igneous Province (CLIP). We propose that an anoxic, hydrothermal plume enriched in Cr(III) with low δ53Cr values characteristic of igneous rocks moved from deep waters of the CLIP eruption site in the eastern Pacific into deep waters of the proto-North Atlantic through an oceanic gateway in the Central Americas. Once inside, metal-rich waters upwelled against the surrounding continental margins. CLIP volcanism delivered a submarine weathering flux of Cr to the oceans during OAE 2 that was large enough to mask the expected isotopic response of the ocean Cr cycle to increasing anoxia, particularly in the proto-North Atlantic Ocean.

  20. Integrated stratigraphy of the Cenomanian-Turonian boundary interval: improving understanding of Oceanic Anoxic Events

    NASA Astrophysics Data System (ADS)

    Jarvis, Ian

    2014-05-01

    The Cenomanian-Turonian boundary (CTB) interval ~ 94 Ma represented a period of major global palaeoenvironmental change. Increasingly detailed multidisciplinary studies integrating sedimentological, palaeontological and geochemical data from multiple basins, are enabling the development of refined but complex models that aid understanding of the mechanisms driving changes in ocean productivity and climate. This paper reviews some of the exciting new developments in this field. Facies change characterizes the CTB interval in most areas. In the Chalk seas of northern Europe, a widespead hiatus was followed by the deposition of clay-rich organic-lean beds of the Plenus Marl and its equivalents, and then nodular chalks. In the North Sea basin and its onshore extension in eastern England and northern Germany, black shales of the Black Band (Blodøks Formation, Hasseltal Formation) occur. Similarly, in northern Tethys, a brief interval of black shale accumulation within a predominantly carbonate succession, is exemplified by the Niveau Thomel in the Vocontian Basin (SE France), and the Livello Bonarelli in Italy. Widespread deposition of organic-rich marine sediments during CTB times led to 12C depletion in surface carbon reservoirs (oceans, atmosphere, biosphere), and a large positive global δ13C excursion preserved in marine carbonates and both marine and terrestrial organic matter (Oceanic Anoxic Event 2). Significant biotic turnover characterises the boundary interval, and inter-regional correlation may be achieved at high resolution using integrated biostratigraphy employing macrofossils (ammonites, inoceramid bivalves), microfossils (planktonic foraminifera, dinoflagellate cysts) and calcareous nannofossils. Correlations can be tested against those based on comparison of δ13C profiles - carbon isotope chemostratigraphy, supplemented by oxygen isotope and elemental data. Interpretation of paired carbonate - organic matter δ13C data from multiple CTB sections

  1. Cretaceous Anoxic Event 1a Linked with Submarine Plateau Volcanism: Geochemical Evidence from Marine Sedimentary Sections

    NASA Astrophysics Data System (ADS)

    Walczak, P. S.; Duncan, R. A.; Clarke, L. J.; Erba, E.

    2006-12-01

    We explore the proposed link between submarine plateau volcanism associated with construction of the Ontong Java-Manihiki-Hikurangi plateau (122 Ma) and Cretaceous Ocean Anoxic Event 1a (OAE1a) through major, minor and trace metal abundance anomalies in marine sedimentary sections recovered in cores from Deep Sea Drilling Program (DSDP) Site 167 (Magellan Rise) and Site 463 (Mid-Pacific Mountains), and at the Cismon drillsite (Belluno Basin, N. Italy). Sites were correlated using bio- and magneto-stratigraphic data, and the global, positive ?13C isotope excursion associated with OAE1a. Bulk sediment samples that bracket the OAE1a interval at each site were powdered, digested and analyzed by ICP-MS and ICP-AES methods. After normalizing element concentrations to Zr to remove the variable contribution of terrigenous material to these sediments, we detected an interval of concentrated metal abundance anomalies that coincides with the abrupt beginning of the d13C isotope excursion, near magnetic chron M0. The metal abundance anomalies (e.g., Sc, Cu, Co, Sn, Cr, Ni, V, Cd, Ag, Bi, Se, W, Mo, Sb, Pb up to 100x background) indicate that intermittent hydrothermal activity, in the form of both water/rock exchange and magmatic degassing, introduced large concentrations of trace metals into the Cretaceous ocean at the same time that extinctions of benthic species, turnover in plankton communities, and increases in isotopically light organic carbon burial occurred. The stratigraphic position of this interval of trace metal anomalies matches events associated with OAE1a and indicates that intermittent hydrothermal activity on a massive scale triggered abrupt changes in carbon burial and deep ocean oxygen contents. The geographical variation in abundances and patterns of trace metals is consistent with a source in the south-central Pacific.

  2. PNAS Plus: Origin of first cells at terrestrial, anoxic geothermal fields

    NASA Astrophysics Data System (ADS)

    Mulkidjanian, Armen Y.; Bychkov, Andrew Yu.; Dibrova, Daria V.; Galperin, Michael Y.; Koonin, Eugene V.

    2012-04-01

    All cells contain much more potassium, phosphate, and transition metals than modern (or reconstructed primeval) oceans, lakes, or rivers. Cells maintain ion gradients by using sophisticated, energy-dependent membrane enzymes (membrane pumps) that are embedded in elaborate ion-tight membranes. The first cells could possess neither ion-tight membranes nor membrane pumps, so the concentrations of small inorganic molecules and ions within protocells and in their environment would equilibrate. Hence, the ion composition of modern cells might reflect the inorganic ion composition of the habitats of protocells. We attempted to reconstruct the "hatcheries" of the first cells by combining geochemical analysis with phylogenomic scrutiny of the inorganic ion requirements of universal components of modern cells. These ubiquitous, and by inference primordial, proteins and functional systems show affinity to and functional requirement for K+, Zn2+, Mn2+, and phosphate. Thus, protocells must have evolved in habitats with a high K+/Na+ ratio and relatively high concentrations of Zn, Mn, and phosphorous compounds. Geochemical reconstruction shows that the ionic composition conducive to the origin of cells could not have existed in marine settings but is compatible with emissions of vapor-dominated zones of inland geothermal systems. Under the anoxic, CO2-dominated primordial atmosphere, the chemistry of basins at geothermal fields would resemble the internal milieu of modern cells. The precellular stages of evolution might have transpired in shallow ponds of condensed and cooled geothermal vapor that were lined with porous silicate minerals mixed with metal sulfides and enriched in K+, Zn2+, and phosphorous compounds.

  3. Degradation of trifluoroacetate in oxic and anoxic sediments

    USGS Publications Warehouse

    Visscher, P.T.; Culbertson, C.W.; Oremland, R.S.

    1994-01-01

    THE deleterious effect of chlorofluorocarbons on stratospheric ozone has led to international cooperation to end their use. The search for acceptable alternatives has focused on hydrofluorocarbons (HFCs) or hydrochlorofluorocarbons (HCFCs) which are attractive because they have relatively short atmospheric residence times. HFCs and HCFCs are attacked by tropospheric hydroxyl radicals, leading to the formation of trifluoroacetate (TFA). Most of the atmospheric TFA is deposited at the Earth's surface, where it is thought to be highly resistant to bacterial attack. Therefore, use of HCFCs and HFCs may lead to accumulation of TFA in soils, where it could prove toxic or inhibitory to plants and soil microbial communities. Although little is known about the toxicity of TFA, monofluoroacetate, which occurs at low levels in some plants and which is susceptible to slow attack by aerobic soil microbes, is known to be acutely toxic. Here we report that TFA can be rapidly degraded microbially under anoxic and oxic conditions. These results imply that significant microbial sinks exist in nature for the elimination of TFA from the environment. We also show that oxic degradation of TFA leads to the formation of fluoroform, a potential ozone-depleting compound with a much longer atmospheric lifetime than the parent compounds.The deleterious effect of chlorofluorcarbons on stratospheric ozone has led to international cooperation to end their use. The search for acceptable alternatives has focused on hydroflnorocarbons (HFCs) or hydrochloroflnorcarbons (HCFs) which are attractive because they have relatively short atmospheric residence times. HFCs and HCFs are attacked by tropospheric hydroxyl radicals, leading to the formation of trifluoroacetate (TFA). Most of the atmospheric TFA is deposited at the Earth's surface, where it is thought to be highly resistant to bacterial attack. Therefore, use of HCFs and HCFs may lead to accummulation of TFA in soils, where it could prove toxic

  4. Understanding Oceanic Anoxic Events: An Integrated Geochemical Approach

    NASA Astrophysics Data System (ADS)

    Cohen, A. S.; Coe, A. L.; Kemp, D. B.; Pearce, C. R.

    2007-12-01

    Discrete intervals of widespread organic carbon accumulation, termed Oceanic Anoxic Events (OAEs), occurred at a few relatively brief intervals during the Mesozoic. Recent studies have shown that these events took place at the same time as other substantial environmental changes that included global warming, ocean acidification, and unusually high levels of species extinctions. However, many factors relating to the behaviour of the Earth System during OAEs remain unclear. These include: The primary driving mechanism(s) - was there one common mechanism or were OAEs the result of different processes; the spatial and temporal extent of seawater anoxia during OAEs; the precise effects on marine and terrestrial biota; variations in atmospheric CO2 and global temperature; and the mechanism and timescale of Earth's recovery process. The records of environmental change during OAEs are best preserved in marine deposits, with continental shelf sections being particularly well studied. The combined use of geochemical, sedimentological and palaeontological observations indicates a complex interplay of factors. Significant advances in our understanding of OAEs have taken place in the last decade or so using new geochemical and isotopic proxies and a high- resolution, multidisciplinary approach. For example, Sr- and Os-isotope data indicate that rates of chemical weathering increased markedly during the Toarcian (Early Jurassic) OAE, whilst Mo-isotope data suggest that the areal extent of seawater anoxia fluctuated during the OAE despite the persistence of euxinic conditions in some regions. The pattern of Mo-isotope data for the Toarcian contrasts strongly with new Mo-isotope results from the Kimmeridge Clay Formation (Late Jurassic), when anoxic conditions were confined to European epicontinental seas and were likely to have resulted from very different primary causes. Cyclostratigraphic analysis has been used to provide a temporal framework for the timescale of OAEs at sub

  5. Great Basin paleontological database

    USGS Publications Warehouse

    Zhang, N.; Blodgett, R.B.; Hofstra, A.H.

    2008-01-01

    The U.S. Geological Survey has constructed a paleontological database for the Great Basin physiographic province that can be served over the World Wide Web for data entry, queries, displays, and retrievals. It is similar to the web-database solution that we constructed for Alaskan paleontological data (www.alaskafossil.org). The first phase of this effort was to compile a paleontological bibliography for Nevada and portions of adjacent states in the Great Basin that has recently been completed. In addition, we are also compiling paleontological reports (Known as E&R reports) of the U.S. Geological Survey, which are another extensive source of l,egacy data for this region. Initial population of the database benefited from a recently published conodont data set and is otherwise focused on Devonian and Mississippian localities because strata of this age host important sedimentary exhalative (sedex) Au, Zn, and barite resources and enormons Carlin-type An deposits. In addition, these strata are the most important petroleum source rocks in the region, and record the transition from extension to contraction associated with the Antler orogeny, the Alamo meteorite impact, and biotic crises associated with global oceanic anoxic events. The finished product will provide an invaluable tool for future geologic mapping, paleontological research, and mineral resource investigations in the Great Basin, making paleontological data acquired over nearly the past 150 yr readily available over the World Wide Web. A description of the structure of the database and the web interface developed for this effort are provided herein. This database is being used ws a model for a National Paleontological Database (which we am currently developing for the U.S. Geological Survey) as well as for other paleontological databases now being developed in other parts of the globe. ?? 2008 Geological Society of America.

  6. Involvement of plasma membrane H+-ATPase in anoxic elongation of stems in pondweed (Potamogeton distinctus) turions.

    PubMed

    Koizumi, Yayoi; Hara, Yoshinao; Yazaki, Yoshiaki; Sakano, Katsuhiro; Ishizawa, Kimiharu

    2011-04-01

    • Pondweed (Potamogeton distinctus) turions can elongate in the absence of O(2). Alcoholic fermentation serves to produce energy for anoxic elongation via the breakdown of starch stored in cells. However, the mechanism of cell growth during anoxic elongation is not fully understood. • Changes in pH, H(+) equivalent and lactate content of the incubation medium were measured during anoxic elongation. The effects of fusicoccin (FC), indole-3-acetic acid (IAA), vanadate, erythrosine B and K(+) channel blockers on anoxic elongation were examined. Cytoplasmic pH and vacuolar pH were measured by (31)P nuclear magnetic resonance (NMR) spectroscopy. • Acidification of the incubation medium occurred during anoxic elongation. The contribution of CO(2) and lactic acid was not sufficient to explain the acidification. FC and IAA enhanced the elongation of stem segments. Vanadate and erythrosine B inhibited anoxic elongation. Acid growth of notched segments was observed. The activity of plasma membrane H(+)-ATPase extracted from pondweed turions was increased slightly in anoxic conditions, but that from pea epicotyls sensitive to anoxic conditions was decreased by incubation in anoxic conditions. Both the cytoplasmic pH and vacuolar pH of pondweed turion cells chased by (32)P NMR spectroscopy were stabilized during a short period < 3 h after anoxic conditions. • We propose that the enhancement of H(+) extrusion by anoxic conditions induces acidification in the apoplast and may contribute to the stabilization of pH in the cytoplasm. PMID:21232059

  7. Minimum Energy Requirements for Sustained Microbial Activity in Anoxic Sediments

    NASA Technical Reports Server (NTRS)

    Hoehler, Tori M.; Alperin, Marc J.; Albert, Daniel B.; Martens, Christoper S.; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    Currently understood mechanisms of biochemical energy conservation dictate that, in order to be biologically useful, energy must be available to organisms in "quanta" equal to, at minimum one-third to one-fifth of the energy required to synthesize ATP in vivo. The existence of this biological energy quantum means that a significant fraction of the chemical amp on Earth cannot be used to drive biological productivity, and places a fundamental thermodynamic constraint on the origins, evolution, and distribution of life. We examined the energy requirements of intact microbial assemblages in anoxic sediments from Cape Lookout Bight, NC, USA, using dissolved hydrogen concentrations as a non-invasive probe. In this system, the thermodynamics of metabolic processes occurring inside microbial cells is reflected quantitatively by H2 concentrations measured outside those cells. We find that methanogenic archaea are supported by energy yields as small as 10 kJ per mol, about half the quantity calculated from studies of microorganisms in culture. This finding implies that a significantly broader range of geologic and chemical niches might be exploited by microorganisms than would otherwise be expected.

  8. Anoxic marine lakes - an analogue environment for insular phosphorite formation

    SciTech Connect

    Burnett, W.C. )

    1990-06-01

    Hundreds of islands in the tropical Pacific Ocean contain phosphate deposits ranging from inconsequential to economically significant in size. Although many of these deposits clearly have formed by the interaction of avian guano with underlying limestone, some display evidence of having developed within an aqueous environment. Several of the emergent carbonate islands in the southern part of Palau contain phosphate deposits that the authors speculate formed in anoxic marine lakes, similar to those which still occur on a few of these islands. Lake water, sediments, and sediment pore waters from Jellyfish Lake, on the island of Eil Malk in Palau, were analyzed during an expedition in 1987. The results of this investigation supported, but did not provide, conclusive evidence of our hypothesis. Pore water profiles of phosphate and fluoride confirmed precipitation of carbonate fluorapatite. However, the extremely high bulk sediment accumulation rate, driven by the high biological productivity of the surface waters of the lake, dilutes authigenic phosphate to low levels. They have refined their original proposal to suggest that phosphate deposits may form either by: (1) subaerial weathering and concentration of phosphatic sediments after these lakes disappear; or (2) interaction of phosphate-enriched sediment pore solutions with limestone at the underlying contact. Another expedition to test these concepts is being planned.

  9. Acute anoxic changes in peripheral nerve: anatomic and physiologic correlations

    PubMed Central

    Punsoni, Michael; Drexler, Steven; Palaia, Thomas; Stevenson, Matthew; Stecker, Mark M

    2015-01-01

    Introduction The response of the peripheral nerve to anoxia is modulated by many factors including glucose and temperature. The purposes of this article are to demonstrate the effects of these factors on the pathological changes induced by anoxia and to compare the electrophysiologic changes and pathological changes in the same nerves. Methods Sciatic nerves were harvested from rats and placed in a perfusion apparatus where neurophysiologic responses could be recorded continuously during a 16 h experiment. After the experiment, light microscopy and electron microscopy were performed. Results Light microscopic images showed mild changes from anoxia at normoglycemia. Hypoglycemic anoxia produced massive axonal swelling while hyperglycemic anoxia produced apparent changes in the myelin. Anoxic changes were not uniform in all axons. Electron microscopy showed only minor disruptions of the cytoskeleton with anoxia during normoglycemia. At the extremes of glucose concentration especially with hyperglycemia, there was a more severe disruption of intermediate filaments and loss of axonal structure with anoxia. Hypothermia protected axons from the effect of anoxia and produced peak axonal swelling in the 17–30°C range. Conclusions The combination of hyperglycemia or hypoglycemia and anoxia produces extremely severe axonal disruption. Changes in axonal diameter are complex and are influenced by many factors. PMID:26221572

  10. On the Origin of Mesozoic Oceanic Anoxic Events (OAEs): An Overview

    NASA Astrophysics Data System (ADS)

    Arthur, M. A.

    2003-12-01

    The search for commonality in the nature and origin of "black shale" units that characterize Jurassic-Cretaceous "Oceanic Anoxic Events" has not come to fruition. Indeed, it would appear that OAEs differ from one another in duration, distribution, organic carbon contents, and carbon isotope signatures. In addition, they differ in origin as interpreted from faunal, floral and stable isotope data. Considerable uncertainty remains regarding the relative roles of productivity (carbon flux) and mechanisms of preservation (low dissolved oxygen at the sediment/water interface, high sedimentation rate, or high mineral surface area) during OAEs in general. For example, it is difficult to separate anoxia from high surface-water productivity as a cause for enhanced organic matter preservation, in part because oxygen depletion in deeper water masses is a response to high fertility and organic carbon flux. Mineral surface area recently has been proposed as the only control on organic carbon contents, but this seems doubtful. There are, however, interesting patterns that bear further examination. OAEs, and black shales in general, typically form during transgressive episodes. For epicontinental black shales, transgression creates conditions that favor nutrient trapping in relatively isolated basins; these nutrients originate either from fluvial sources or are transported into epicontinental seas from adjacent ocean basins with well-developed, nutrient-rich oxygen minimum zones. It is not clear how transgression induces more global, open-ocean OAEs. They may be a response to several factors related to the cause(s) of the transgressions, including changes in deepwater overturn rates induced by increasing expanse of shallow shelf regions or opening of oceanic gateways, and/or by overall higher nutrient fluxes from weathering brought about by warmer, wetter climates related to times of greater outgassing resulting from increased volcanism. In some cases, enhanced oceanic

  11. ENANTIOSELECTIVE MICROBIAL TRANSFORMATION OF THE PHENYLPYRAZOLE INSECTICIDE FIPRONIL IN ANOXIC SEDIMENTS

    EPA Science Inventory

    Fipronil, a chiral insecticide, was biotransformed initially to fipronil sulfide in anoxic sediment slurries following a short lag period. Sediment slurries characterized as either sulfidogenic or methanogenic transformed fipronil with half-lives of approximately 35 and 40 days, ...

  12. QSARS FOR PREDICTING REDUCTIVE TRANSFORMATION RATE CONSTANTS OF HALOGENATED AROMATIC HYDROCARBONS IN ANOXIC SEDIMENT SYSTEMS

    EPA Science Inventory

    Quantitative structure-activity relationships (QSARs) are developed relating initial and final pseudo-first-order disappearance rate constants of 45 halogenated aromatic hydrocarbons in anoxic sediments to four readily available molecular descriptors: the carbon-halogen bond stre...

  13. ENVIRONMENTAL CHARACTERISTICS AFFECTING REDUCTIVE TRANSFORMATION OF ORGANIC POLLUTANTS IN ANOXIC SEDIMENTS

    EPA Science Inventory

    Reductive transformations are important processes for determining the fate of organic pollutants in anoxic environments. These processes are most often microbially mediated by both direct and indirect means. For example, specific bacteria transform organic pollutants directly as ...

  14. Anoxic biodegradation of petroleum hydrocarbons in saline media using denitrifier biogranules.

    PubMed

    Moussavi, Gholamreza; Shekoohiyan, Sakine; Naddafi, Kazem

    2016-07-01

    The total petroleum hydrocarbons (TPH) biodegradation was examined using biogranules at different initial TPH concentration and contact time under anoxic condition in saline media. The circular compact biogranules having the average diameter between 2 and 3mm were composed of a dense population of Bacillus spp. capable of biodegrading TPH under anoxic condition in saline media were formed in first step of the study. The biogranules could biodegrade over 99% of the TPH at initial concentration up to 2g/L at the contact time of 22h under anoxic condition in saline media. The maximum TPH biodegradation rate of 2.6 gTPH/gbiomass.d could be obtained at initial TPH concentration of 10g/L. Accordingly, the anoxic biogranulation is a possible and promising technique for high-rate biodegradation of petroleum hydrocarbons in saline media. PMID:26990939

  15. Evidence for local ciliate endemism in an alpine anoxic lake.

    PubMed

    Stoeck, Thorsten; Bruemmer, Franz; Foissner, Wilhelm

    2007-10-01

    Despite its long history, biogeography has received relatively little attention within the field of microbial ecology. Consequently, a fierce debate rages whether protists inhabit restricted geographic areas (endemism hypothesis) or are globally dispersed (ubiquitous dispersal hypothesis). The data presented in this article support the endemism hypothesis. We succeeded in isolating an oligohymenophorean ciliate from a microbial mat in a meromictic anoxic alpine lake (Alatsee) in Germany. The ciliary pattern and the morphometry of this isolate are remarkably similar to Urocentrum turbo (Mueller, 1786) Nitzsch, 1827. However, the organism does not possess trichocysts, a conspicuous and characteristic feature of U. turbo. Instead, the U. turbo-like isolate from lake Alatsee displays merely trichocyst anlagen ("ghosts") in the cytoplasm that are only visible after protargol impregnation and which become never attached to the cell's cortex. Despite the distinctness of this difference, such a morphospecies has not been described from any other environment. Thus, we suggest that the U. turbo-like isolate from lake Alatsee is a local endemic ecotype, although the sequences of the 18S rRNA, ITS1, 5.8S rRNA, and ITS2 genes are nearly identical to those of U. turbo (Mueller, 1786) Nitzsch, 1827. This indicates that neither 18S rDNA nor ITS1, ITS2, and 5.8S rDNA sequences are reliable means to conclusively resolve different morphospecies or ecotypes of ciliates. As a consequence, we argue that protist species richness can only be reliably accounted for by considering both molecular and morphological data. PMID:17323118

  16. Anoxic deep-sea microbial dolomite as a paleoceanographic archive - new insights from old "bugs"

    NASA Astrophysics Data System (ADS)

    Miller, N. R.; Leybourne, M. I.

    2010-12-01

    Earth’s history of biogenic carbonate production is dominated by pre-skeletal (late Ediacaran) microbe-catalyzed carbonate, including low T/P microbial (aka organogenic) dolomite, but paleoceanographic contexts are unclear due to the lack of proxy control provided by skeletal analogs and/or diagenesis. Microbial communities affiliated with dolomite generation (chiefly sulfate reducers and methanogens) are now known to persist in a diversity of Recent anoxic environments, but only deep-sea settings are sufficiently insulated from eustatic-meteoric diagenesis to preserve long-term records of possible paleoceanographic significance. The Miocene Monterey Formation contains episodic-to-cyclic microbial dolomite intervals interstratified with microfossil calcite, and thereby offers an excellent test the paleoceoanographic archive potential of microbial dolomite. Accordingly, we established a detailed dolomite chemostratigraphic profile (δ18O, δ13C, TOC, trace elements/REEs) from a continuous, thermally immature, Monterey core (offshore Santa Barbara-Ventura Basin), preserving >100 distinct early diagenetic (pre significant compaction, pre-diatom dissolution, post-pyrite) microbial dolomite intervals. Despite dolomite horizons being physically separate from one stratum to the next, they exhibit regular core-wide variations in δ13C and δ18O. Dolomite within the main Monterey depositional interval has entirely negative δ13C values (-2 to -16‰) consistent with generation in the zone of microbial sulfate reduction, whereas positive δ13C values (+2 to +9‰) consistent with generation from methanogenic pore-waters occur in lithologic transitions with bounding formations. Dolomites within the main Monterey depositional interval mirror microfossil calcite δ18O variations, notably pronounced global mid-Miocene enrichment after ~14 Ma linked to cooling and significant expansion of Antarctic ice. Dolomite δ13C mirrors sediment accumulation rate, with lightest values

  17. Attenuation and colloidal mobilization of bacteriophages in natural sediments under anoxic as compared to oxic conditions.

    PubMed

    Klitzke, Sondra; Schroeder, Jendrik; Selinka, Hans-Christoph; Szewzyk, Regine; Chorus, Ingrid

    2015-06-15

    Redox conditions are known to affect the fate of viruses in porous media. Several studies report the relevance of colloid-facilitated virus transport in the subsurface, but detailed studies on the effect of anoxic conditions on virus retention in natural sediments are still missing. Therefore, we investigated the fate of viruses in natural flood plain sediments with different sesquioxide contents under anoxic conditions by considering sorption to the solid phase, sorption to mobilized colloids, and inactivation in the aqueous phase. Batch experiments were conducted under oxic and anoxic conditions at pH values between 5.1 and 7.6, using bacteriophages MS2 and PhiX174 as model viruses. In addition to free and colloid-associated bacteriophages, dissolved and colloidal concentrations of Fe, Al and organic C as well as dissolved Ca were determined. Results showed that regardless of redox conditions, bacteriophages did not adsorb to mobilized colloids, even under favourable charge conditions. Under anoxic conditions, attenuation of bacteriophages was dominated by sorption over inactivation, with MS2 showing a higher degree of sorption than PhiX174. Inactivation in water was low under anoxic conditions for both bacteriophages with about one log10 decrease in concentration during 16 h. Increased Fe/Al concentrations and a low organic carbon content of the sediment led to enhanced bacteriophage removal under anoxic conditions. However, even in the presence of sufficient Fe/A-(hydr)oxides on the solid phase, bacteriophage sorption was low. We presume that organic matter may limit the potential retention of sesquioxides in anoxic sediments and should thus be considered for the risk assessment of virus breakthrough in the subsurface. PMID:25747372

  18. Influence of oxic/anoxic condition on sorption behavior of PFOS in sediment.

    PubMed

    Ololade, Isaac Ayodele; Zhou, Qin; Pan, Gang

    2016-05-01

    Sediment components and redox properties change with oxic/anoxic condition, which affect the environmental transport of perfluorooctane sulfonate (PFOS). Herein, the influence of oxic/anoxic condition on the variation of redox and residual components of sediments, where organic matter, iron and manganese oxides are separated from the original sediment collected from Lake Taihu, China, are investigated. Meanwhile, the distinguishing sorption behaviors of PFOS on various residual sediments under oxic and anoxic condition are studied. Sediment after extracting iron and manganese (S-FeMn), which possessed the highest organic carbon (0.99%), had the highest affinity for PFOS under oxic condition. However, anoxic environment resulted in an increase of the pH, dissolving of organic carbon and de-protonation of S-FeMn, which caused the lower sorption capacity of PFOS on S-FeMn. Sediment after extracting manganese (S-Mn) had the higher sorption ability in anoxic environment because the Fe(2+) from S-Mn provided more effective electrostatic sites for anionic PFOS. When the environment changed to oxic condition, the iron existed as trivalent form in S-Mn, which resulted in a block of effective sorption site and reduced the sorption amounts of PFOS. The higher percentage of manganese oxides restrained the sorption of PFOS. Hence, whether or not oxic/anoxic condition promoted the PFOS sorption depended on both the percentage and form of various components in the sediment. The study generated further insight into the environmental transport of PFOS in the sediments with different properties and the wetland system, where oxic/anoxic subsurface flow was constructed. PMID:26350897

  19. Performance evaluation of a novel anaerobic-anoxic sludge blanket reactor for biological nutrient removal treating municipal wastewater.

    PubMed

    Díez-Montero, Rubén; De Florio, Loredana; González-Viar, Marta; Herrero, María; Tejero, Iñaki

    2016-06-01

    A novel anaerobic-anoxic sludge blanket reactor, AnoxAn, unifies the non-aerated zones of the biological nutrient removal treatment train in a single upflow reactor, aimed at achieving high compactness and efficiency. The environmental conditions are vertically divided up inside the reactor with the anaerobic zone at the bottom and the anoxic zone above. This contribution presents the performance evaluation of the novel reactor in the removal of organic matter and nutrients from municipal wastewater, coupled with an aerobic hybrid MBR. The overall system achieved total nitrogen and phosphorus removal with average efficiencies of 75% and 89%, respectively. Separate anoxic and anaerobic conditions were maintained in AnoxAn, allowing anaerobic phosphate release and nearly complete anoxic denitrification in the single reactor operating with an HRT of 4.2h. Biomass was retained in the reactor achieving TSS concentration up to 10gL(-1) and partial hydrolysis of influent particulate organic matter. PMID:26970922

  20. Phylogenetic Diversity of Bacterial and Archaeal Communities in the Anoxic Zone of the Cariaco Basin†

    PubMed Central

    Madrid, Vanessa M.; Taylor, Gordon T.; Scranton, Mary I.; Chistoserdov, Andrei Y.

    2001-01-01

    Microbial community samples were collected from the anoxic zone of the Cariaco Basin at depths of 320, 500, and 1,310 m on a November 1996 cruise and were used to construct 16S ribosomal DNA libraries. Of 60 nonchimeric sequences in the 320-m library, 56 belonged to the ɛ subdivision of the Proteobacteria (ɛ-Proteobacteria) and 53 were closely related to ectosymbionts of Rimicaris exoculata and Alvinella pompejana, which are referred to here as epsilon symbiont relatives (ESR). The 500-m library contained sequences affiliated with the fibrobacteria, the Flexibacter-Cytophaga-Bacteroides division, the division Verrucomicrobia, the division Proteobacteria, and the OP3 candidate division. The Proteobacteria included members of the γ, δ, ɛ and new candidate subdivisions, and γ-proteobacterial sequences were dominant (25.6%) among the proteobacterial sequences. As in the 320-m library, the majority of the ɛ-proteobacteria belonged to the ESR group. The genus Fibrobacter and its relatives were the second largest group in the library (23.6%), followed by the δ-proteobacteria and the ɛ-proteobacteria. The 1,310-m library had the greatest diversity; 59 nonchimeric clones in the library contained 30 unique sequences belonging to the planctomycetes, the fibrobacteria, the Flexibacter-Cytophaga-Bacteroides division, the Proteobacteria, and the OP3 and OP8 candidate divisions. The proteobacteria included members of new candidate subdivisions and the β, γ, δ, and ɛ-subdivisions. ESR sequences were still present in the 1,310-m library but in a much lower proportion (8.5%). One archaeal sequence was present in the 500-m library (2% of all microorganisms in the library), and eight archaeal sequences were present in the 1,310-m library (13.6%). All archaeal sequences fell into two groups; two clones in the 1,310-m library belonged to the kingdom Crenarchaeota and the remaining sequences in both libraries belonged to the kingdom Euryarchaeota. The latter group appears to

  1. Nitrification and aerobic denitrification in anoxic-aerobic sequencing batch reactor.

    PubMed

    Alzate Marin, Juan C; Caravelli, Alejandro H; Zaritzky, Noemí E

    2016-01-01

    The aim of this study was to evaluate the feasibility of achieving nitrogen (N) removal using a lab-scale sequencing batch reactor (SBR) exposed to anoxic/aerobic (AN/OX) phases, focusing to achieve aerobic denitrification. This process will minimize emissions of N2O greenhouse gas. The effects of different operating parameters on the reactor performance were studied: cycle duration, AN/OX ratio, pH, dissolved oxygen concentration (DOC), and organic load. The highest inorganic N removal (NiR), close to 70%, was obtained at pH=7.5, low organic load (440mgCOD/(Lday)) and high aeration given by 12h cycle, AN/OX ratio=0.5:1.0 and DOC higher than 4.0mgO2/L. Nitrification followed by high-rate aerobic denitrification took place during the aerobic phase. Aerobic denitrification could be attributed to Tetrad-forming organisms (TFOs) with phenotype of glycogen accumulating organisms using polyhydroxyalkanoate and/or glycogen storage. The proposed AN/OX system constitutes an eco-friendly N removal process providing N2 as the end product. PMID:26512862

  2. Biosolids reduction by the oxic-settling-anoxic process: Impact of sludge interchange rate.

    PubMed

    Semblante, Galilee U; Hai, Faisal I; Bustamante, Heriberto; Guevara, Nelly; Price, William E; Nghiem, Long D

    2016-06-01

    The impact of sludge interchange rate (SIR) on sludge reduction by oxic-settling-anoxic (OSA) process was investigated. The sludge yield of an OSA system (a sequencing batch reactor, SBR, integrated with external anoxic reactors) was compared to that of a control (an SBR attached to a single-pass aerobic digester). SIR (%) is the percentage by volume of sludge returned from the external reactor into the main bioreactor of the OSA, and was varied from 0% to 22%. OSA achieved greater sludge reduction when fed with unsettled sewage (sCOD=113mg/L) rather than settled sewage (sCOD=60mg/L). The SIR of 11% resulted in the highest OSA performance. At the optimum SIR, higher volatile solids destruction and nitrification/denitrification (i.e., conversion of destroyed volatile solids into inert forms) were observed in the external anoxic and intermittently aerated (i.e., aerobic/anoxic) reactors, respectively. Denitrification in the aerobic/anoxic reactor was inefficient without SIR. Effluent quality and sludge settleability of the main SBR were unaffected by SIR. PMID:26810193

  3. Effect of sample pretreatment on the fractionation of arsenic in anoxic soils.

    PubMed

    Huang, Guanxing; Chen, Zongyu; Sun, Jichao; Liu, Fan; Wang, Jia; Zhang, Ying

    2015-06-01

    Using by sequential extraction procedures to obtain the chemical forms of arsenic in soils can provide useful information for the assessment of arsenic mobility and bioavailability in soils. However, sample pretreatments before the extraction probably have some effects on the fractionation of arsenic in soils. Impact of sample pretreatments (freeze-drying, oven-drying, air-drying, and the fresh soil) on the fractionation of arsenic in anoxic soils was investigated in this study. The results show that there are some differences for arsenic fractions in soils between by drying pretreatments and by the fresh soil, indicating that the redistribution among arsenic fractions in anoxic soils occurs after drying pretreatments. The redistribution of arsenic fractions in anoxic soils is ascribed to the oxidation of organic matter and sulfides, the crystallization of iron (hydr)oxides, the ageing process, and the diffusion of arsenic into micropores. The freeze-drying is the best drying method to minimize the effect on the fractionation of arsenic in anoxic soils, while air-drying is the worst one. Drying pretreatments are not recommended for the fractionation of arsenic in anoxic soils with high concentration of iron. PMID:25537285

  4. Thallium Isotopes Tracking Mn-Oxide Burial - A Proxy for Deoxygenation During Oceanic Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    Ostrander, C.; Owens, J. D.; Nielsen, S.

    2015-12-01

    Thallium (Tl) is proving to be a useful paleoredox proxy given that the Tl isotope composition of seawater is highly dependent on the magnitude of manganese (Mn) oxide burial in the ocean. In turn, Mn oxides require oxygen at the sediment-water interface to precipitate, linking the Tl isotope cycle to ocean oxygenation. Currently, the marine residence time of Tl is ~20kyrs and the Tl isotope composition of seawater is invariant, which suggests Tl isotopes could be a global tracer of marine Mn-oxide burial. Importantly, recent research suggests sediments deposited under a euxinic water column faithfully record the Tl isotope value of the overlying oxic water column (e.g. Black Sea and Cariaco Basin). Therefore, analysis of organic-rich black shales may prove useful in evaluating the seawater Tl isotope composition of past oceans and, hence, large-scale burial of Mn-oxides and the extent of bottom water ocean oxygenation. A logical test for this proxy is during the well-studied Cenomanian-Turonian boundary event termed Oceanic Anoxic Event 2 (OAE-2) at ~94 Ma. It is known that the global extent of anoxia and euxinia increased during this event, however, to what extent global bottom water deoxygenation occured is unconstrained. If deep water deoxygenation occurred, it would be hypothesized that Mn-oxide precipitation would decrease, resulting in a positive Tl isotope excursion during OAE-2. We have analyzed the Tl isotope composition of organic-rich black shales from Site 1258 of the Ocean Drilling Program (ODP) spanning the period before, during, and after OAE-2. Based on Fe redox proxies, the entire section is euxinic and thus no Mn-oxides are present (i.e. no local redox changes). Before the event, Tl isotope compositions are similar or slightly heavier than modern seawater values. Just prior to the onset of OAE-2, a positive shift occurs and is maintained until recovery, slightly before the termination of the event. The shift to heavier values and subsequent

  5. New stratigraphic and isotopic record of the Toarcian Oceanic Anoxic Event from Hungary

    NASA Astrophysics Data System (ADS)

    Müller, Tamás; Price, Gregory; Bajnai, Dávid; Nyerges, Anita; Pálfy, József; May, Zoltán

    2016-04-01

    In the Early Toarcian (˜183 Ma) major global environmental changes took place in the ocean-atmosphere system, including the widely discussed Toarcian Oceanic Anoxic Event (T-OAE). This phenomenon is characterized by strong perturbation of the carbon-cycle and other geochemical systems. A peculiar negative carbon-isotope excursion (CIE) is a hallmark of the event, reflecting the injection of large amount of isotopically light carbon into the ocean-atmosphere system, possible due to dissociation of gas-hydrate from shelf areas. This observed negative CIE and a subsequent broad positive anomaly could be also key signals for chemostratigraphical correlation. In our study we obtained new, high-resolution organic carbon isotope data from the Réka Valley section of the Mecsek Mts. in southern Hungary. The Mecsek Basin was located at the European margin where a thick Lower Jurassic succession of siliciclastic hemipelagic sediments is interrupted by 13 m of organic-rich black shales in the Lower Toarcian. The δ13Corg data from the Réka Valley section is characterized by very negative values (averaging -32), with apparently cyclic fluctuation. The shape of the δ13Corg shows that a continuous and complete record can be found in the Réka Valley and also suggests mixed features between the carbon isotope record of the NW European and Tethyan regions. We have also carried out high resolution handheld XRF analyzes to study cyclostratigraphic signals in the section. The distribution of four elements Ti, Ca, Si and Al were used in our studies beside the δ13Corg data. The duration for the negative shift at Réka Valley, calculated from XRF signals, is either 550-750 kyr, 200-275 kyr or 116-158 kyr, based on 100 kyr short eccentricity, 36.6 kyr obliquity or 21.1 kyr precession signals, respectively. Several previous studies concluded that the most probable astronomical forcing factor during the CIE of the Toarcian OAE is obliquity. Therefore, we assume a duration around 200

  6. Trace Metal Associations in an Anoxic Lake: the Relative Roles of Organic Carbon and Reduced Sulfur

    NASA Astrophysics Data System (ADS)

    Poulson Brucker, R.; McManus, J.; Severmann, S.; Owens, J.; Lyons, T.

    2008-12-01

    We investigate the geochemistry of the trace elements Mo, U, and Re in sediments from a transect through the chemocline of Lake Tanganyika, East Africa. In addition to these relatively shallow cores (70 to 330m), we present data from a longer core representing ~30,000 years of lake history, which was taken within the sulfidic waters that lie well below the chemocline (~900m water depth). Our goal is to establish a framework for trace metal deposition within the context of organic carbon and sulfur burial - two important carrier phases for these metals. Sediment organic carbon contents are high, generally between 5 and 10 wt% at the shallow sites, and up to 16 wt% in the deep basin. Despite the very low sulfate (~35 μM) and sulfide (~30 μM) concentrations in the lake water, sediment reduced sulfur contents are up to 1.5 wt% in the shallow sites and as high as 5 wt% in the deepest sediments. Sediment C:S ratios for all study sites are consistent with these sediments generally being sulfur limited. Sediment C:S ratios decrease from ~22, which agree well with previously published freshwater values, to ~6 with increasing site depth. The lower C:S ratios are more comparable to the marine value (2.8), and suggest that a considerable amount of organic carbon must be decomposing via sulfate reduction. C:S ratios in the deepest site are highly variable, with some even lower than the marine threshold. In light of the sedimentary organic carbon and sulfur data, trace metal distributions imply that U deposition is closely associated with organic carbon deposition and is independent of sulfur cycling. In contrast, Mo behavior suggests both an association with organic carbon as well as sulfur, but is subject to poor preservation where the sediment C:S ratios are highest. Rhenium accumulation only appears significant at the deepest most sulfur-rich site, and there is a close correspondence between Mo and Re distributions. These latter observations suggest that sulfur burial is

  7. Assessing the reach of the Toarcian Oceanic Anoxic Event: New insights from western North America

    NASA Astrophysics Data System (ADS)

    Them, T. R.; Gill, B. C.; Gerhardt, A. M.; Martindale, R. C.

    2013-12-01

    An ongoing debate concerns the extent and magnitude of the geochemical changes that surround Mesozoic Oceanic Anoxic Events (OAEs). This regional versus global debate may be most contentious for the oldest Mesozoic event, the Toarcian OAE (T-OAE) (~183 million years ago). Previous interpretations of Toarcian strata led to the conclusion that widespread marine anoxia prevailed during this interval. Carbon (δ13C) and sulfur (δ34S) isotope excursions found in many Toarcian sections also support the notion of global-scale perturbations to these geochemical cycles during the OAE. However, it has also been posited that the T-OAE was not of global extent and instead was a phenomenon whose geochemical signatures, particularly the negative carbon isotope excursion, resulted from regional oceanographic processes. One of the key issues surrounding this debate is that the overwhelming majority of Toarcian studies have focused on sedimentary successions confined geographically to Europe. Therefore, it is necessary to analyze the geochemical properties of Toarcian sedimentary deposits in other regions in order to resolve the discussion concerning the geographic reach of the Toarcian OAE. To this end, we will present geochemical data from the Early Jurassic sedimentary succession from the Western Canadian Sedimentary Basin (WCSB) of western North America. In the WCSB, the Early Jurassic interval can be found within the Fernie Formation, which contains both black shale and carbonates facies. Published biostratigraphy indicates the presence of the T-OAE interval in several drill core and outcrop locations in western Alberta. We will present high-resolution δ13C, δ34S, and total organic carbon analyses from the Pliensbachian-Toarcian interval spanning the T-OAE. Comparison of our geochemical records from the WCSB to the European records will assist in evaluating the global extent of the Toarcian isotope excursions. Additionally the relationship between the onset of organic

  8. Upper Cisuralian palynology and palaeoclimate of Manuguru area Godavari basin, India and their global correlation

    NASA Astrophysics Data System (ADS)

    K, Pauline Sabina; Jha, Neerja

    2014-10-01

    Collie Basin of west Australia point out to their Early Permian (Late Sakmarian-Early Artinskian) age. Palynomorphs such as Botryococcus sp., Tetraporinia sp., Balmeela sp. and Leiosphaeridia sp. are also recorded which suggest that these sediments were deposited during post-glacial near shore, cool and humid environment.

  9. Modeling evidences for global warming, Arctic seawater freshening, and sluggish oceanic circulation during the Early Toarcian anoxic event

    NASA Astrophysics Data System (ADS)

    Dera, Guillaume; Donnadieu, Yannick

    2012-06-01

    The paleoecological disturbances recorded during the Early Toarcian warming event (183 Myr ago), including marine anoxia, sea level rise, seawater acidification, carbonate production crisis, and species extinctions, are often regarded as past examples of Earth's possible responses to the rapid emergence of super greenhouse conditions. However, physical mechanisms explaining both the global and local expressions of paleoenvironmental events are still highly debated. Here we analyze the paleoclimatic and paleoceanographic consequences of increases in atmospheric pCO2 levels at a multiscale resolution using a fully coupled ocean-atmosphere model (FOAM). We show that, in association with stronger high-latitude precipitation rates and enhanced continental runoff, the demise of polar sea ice due to the global warming event involved a regional freshening of Arctic surface seawaters. These disturbances lead to progressive slowdowns of the global oceanic circulation accountable for widespread ocean stratification and bottom anoxia processes in deep oceanic settings and epicontinental basins. In agreement with very negative oxygen isotope values measured on fossil shells from the NW Tethys, our simulations also show that recurrent discharges of brackish and nutrient-rich Arctic surface waters through the Viking Corridor could have led to both vertical and geographical gradients in salinity and seawater δ18O in the NW Tethyan seas. Locally contrasted conditions in water mass density and rises in productivity rates due to strong nutrient supplies could partly explain the regional severity of the anoxic event in the restricted Euro-boreal domains, as it has been previously suggested and modeled regionally.

  10. Authigenic carbonate precipitation at the end-Guadalupian (Middle Permian) in China: Implications for the carbon cycle in ancient anoxic oceans

    NASA Astrophysics Data System (ADS)

    Saitoh, Masafumi; Ueno, Yuichiro; Isozaki, Yukio; Shibuya, Takazo; Yao, Jianxin; Ji, Zhansheng; Shozugawa, Katsumi; Matsuo, Motoyuki; Yoshida, Naohiro

    2015-12-01

    Carbonate precipitation is a major process in the global carbon cycle. It was recently proposed that authigenic carbonate (carbonate precipitated in situ at the sediment-water interface and/or within the sediment) played a major role in the carbon cycle throughout Earth's history. The carbon isotopic composition of authigenic carbonates in ancient oceans have been assumed to be significantly lower than that of dissolved inorganic carbon (DIC) in seawater, as is observed in the modern oceans. However, the δ13Ccarb values of authigenic carbonates in the past has not been analyzed in detail. Here, we report authigenic carbonates in the uppermost Guadalupian (Middle Permian) rocks at Chaotian, Sichuan, South China. Monocrystalline calcite crystals <20 mm long are common in the black mudstone/chert sequence that was deposited on a relatively deep anoxic slope/basin along the continental margin. Textures of the crystals indicate in situ precipitation on the seafloor and/or within the sediments. The calcite precipitation corresponds stratigraphically with denitrification and sulfate reduction in the anoxic deep-water mass, as indicated by previously reported nitrogen and sulfur isotope records, respectively. Relatively high δ13Ccarb values of the authigenic carbonates (largely -1 ‰) compared with those of organic matter in the rocks (ca. -26 ‰) suggest that the main carbon source of the carbonates was DIC in the water column. The calcite crystals precipitated in an open system with respect to carbonate, possibly near the sediment-water interface rather than deep within the sediments. The δ13Ccarb values of the carbonates were close to the δ13CDIC value of seawater due to mixing of 13C-depleted remineralized organic carbon (that was released into the water column by the water-mass anaerobic respiration) with the large DIC pool in the oceans. Our results imply that δ13Ccarb values of authigenic carbonates in the anoxic oceans might have been systematically

  11. Live (Rose-bengal stained) foraminifera from deep-sea anoxic salt brine in the Eastern Mediterranean: toward understanding limit of life for single-celled eukaryotes (foraminifera)

    NASA Astrophysics Data System (ADS)

    Kitazato, H.; Ohkawara, N.; Iwasaki, A.; Nomaki, H.; Akoumianaki, I.; Tokuyama, H.

    2012-04-01

    What is a limit of life for the eukaryotes? Eukaryotes are thought to adapt and evolve under oxic environmental conditions. Recently, there are many exceptions for this hypothesis, as many eukaryotes including metazoan groups are found in anoxic environmental conditions. We found many rose-bengal stained foraminifera from a deep-hypersaline anoxic basin (DHAB) in the eastern Mediterranean. During KH06-04 cruise, we conducted oceanographic research at Medée Lake, the largest DHAB, that is located 100km southwest of Crete Island in the eastern Mediterranean. The lake situates at 2920m in water depth. Depth of saline water is 120m in maximum. Both water and sediment samplings were carried out both with Niskin bottles and multiple corer attached to camera watching sampling system at three sites, inside of the lake (CS), the edge of the lake (OMS) and the normal deep-sea floor (RS). Temperature, salinity, and dissolved oxygen concentrations at central saline lake are 15.27 oC, 328PSU, and 0.0 ml/L, respectively. Strong smell of hydrogen sulfide was detected from the lake sediment. Subsamples were conducted for multiple core samples using 3 subcores(φ 2.9cm) from each core tube (φ 8.2cm). Sediment samples were fixed with 4% formalin Rose Bengal solution on board. In laboratory, samples were washed with 32μm sieve. Rose Bengal stained specimens were picked under binocular stereomicroscope (Zeiss Stemi SV11) for surface 0.5cm layer, and identified with inverted microscope (Nikon ECLIPSE TE300). In total, 26 species belonging to 9 genera were identified from three sites. Six species belonging to two genera were identified in the center of the salt brine. Only a few species are common among three sites, even though the numbers of common species were 10 between OMS and RS sites. In DHAB, spherical organic-walled species, such as allogromiid and psammosphaerid, are dominant. In contrast, tube-like chitinous foraminifera, such as Resigella, Conicotheca and Nodellum, are

  12. Influence of an oxic settling anoxic system on biomass yield, protozoa and filamentous bacteria.

    PubMed

    Rodriguez-Perez, Santiago; Fermoso, Fernando G

    2016-01-01

    An oxic settling anoxic system coupled with an activated sludge process has been studied to reduce sewage sludge production. The reduction of sludge yield, excess sludge production and active biomass yield were 51.7%, 52.9% and 67.1%, respectively, compared with the control system. The oxic reactor of the oxic settling anoxic system, even with a lower active biomass concentration than the oxic reactor of control system, showed a higher metabolic activity in their active biomass. Diversity and crawling ciliates group have been shown as promising bioindicators of active biomass yield reduction. The identification of floc-forming bacteria in the control system suggested that oxic settling anoxic system will improve settling properties compared to a Conventional Activated Sludge process. PMID:26479432

  13. Carbon and sulfur relationships in Devonian shales from the Appalachian Basin as an indicator of environment of deposition.

    USGS Publications Warehouse

    Leventhal, J.S.

    1987-01-01

    Interprets the covariance of organic carbon and sulfide sulfur in core samples. This covariance results from the catabolism of organic carbon and concomitant reduction of sulfate by sulfate reducing bacteria to form aqueous sulfide which reacts with iron. Defines a central basin area that was the most anoxic-sulfidic (euxinic). This part of the basin is similar to the area of thickest, most organic carbon-rich sediments and has the greatest source-rock potential for petroleum. -from Author

  14. Survival and Recovery of Methanotrophic Bacteria Starved Under Oxic and Anoxic Conditions

    NASA Technical Reports Server (NTRS)

    Roslev, Peter; King, Gary M.

    1994-01-01

    The effects of carbon deprivation on survival of methanotrophic bacteria were compared in cultures incubated in the presence and absence of oxygen in the starvation medium. Survival and recovery of the examined methanotrophs were generally highest for cultures starved under anoxic conditions as indicated by poststarvation measurements of methane oxidation, tetrazolium salt reduction, plate counts, and protein synthesis. Methylosinus trichosporium OB3b survived up to 6 weeks of carbon deprivation under anoxic conditions while maintaining a physiological state that allowed relatively rapid (hours) methane oxidation after substrate addition. A small fraction of cells starved under oxic and anoxic conditions (4 and 10%, respectively) survived more than 10 weeks but required several days for recovery on plates and in liquid medium. A non-spore-forming methanotroph, strain WP 12, displayed 36 to 118% of its initial methane oxidation capacity after 5 days of carbon deprivation. Oxidation rates varied with growth history prior to the experiments as well as with starvation conditions. Strain WP 12 starved under anoxic conditions showed up to 90% higher methane oxidation activity and 46% higher protein production after starvation than did cultures starved under oxic conditions. Only minor changes in biomass and niorpholow were seen for methanotrophic bacteria starved tinder anoxic conditions. In contrast, starvation under oxic conditions resulted in morphology changes and an initial 28 to 35% loss of cell protein. These data suggest that methanotrophic bacteria can survin,e carbon deprivation under anoxic conditions by using maintenance energy derived Solelyr from an anaerobic endogenous metabolism. This capability could partly explain a significant potential for methane oxidation in environments not continuously, supporting aerobic methanotrophic growth.

  15. Multiple facets of anoxic metabolism and hydrogen production in the unicellular green alga Chlamydomonas reinhardtii.

    PubMed

    Grossman, Arthur R; Catalanotti, Claudia; Yang, Wenqiang; Dubini, Alexandra; Magneschi, Leonardo; Subramanian, Venkataramanan; Posewitz, Matthew C; Seibert, Michael

    2011-04-01

    Many microbes in the soil environment experience micro-oxic or anoxic conditions for much of the late afternoon and night, which inhibit or prevent respiratory metabolism. To sustain the production of energy and maintain vital cellular processes during the night, organisms have developed numerous pathways for fermentative metabolism. This review discusses fermentation pathways identified for the soil-dwelling model alga Chlamydomonas reinhardtii, its ability to produce molecular hydrogen under anoxic conditions through the activity of hydrogenases, and the molecular flexibility associated with fermentative metabolism that has only recently been revealed through the analysis of specific mutant strains. PMID:21563367

  16. Pennsylvanian-Permian tectonism in the Great Basin: The Dry Mountain trough and related basins

    SciTech Connect

    Snyder, W.S.; Spinosa, C.; Gallegos, D.M. )

    1991-02-01

    Pennsylvanian-Permian tectonism affected the continental margin of western North America from the Yukon to the Mojave Desert. Specific signatures of this tectonism include local angular unconformities, regional disconformities, renewed outpouring of clastic debris from a reactivated Antler and related highlands, and development of deeper water basins with anoxic sediments deposited below wave base. The basins formed include Ishbel trough (Canada), the Wood River basin (Idaho), Cassia basin, Ferguson trough, Dry Mountain trough (all Nevada), and unnamed basins in Death Valley-Mojave Desert region. The Dry Mountain trough (DMT) was initiated during early Wolfcampian and received up to 1,200 m of sediment by the late Leonardian. The lower contact is a regional unconformity with the Ely Limestone, or locally with the Diamond Peak or Vinini formations. Thus, following a period of localized regional uplift that destroyed the Ely basin, portions of the uplifted and exposed shelf subsided creating the Dry Mountain trough. Evidence suggesting a tectonic origin for the DMT includes (1) high subsidence rates (60-140 m/m.y.); (2) renewed influx of coarse clastic debris from the Antler highlands: (3) possible pre-Early Permian folding, thrusting, and tilting within the highlands; and (4) differential subsidence within the Dry Mountain trough, suggesting the existence of independent fault blocks.

  17. The Early Toarcian Oceanic Anoxic Event and its sedimentary record in Switzerland

    NASA Astrophysics Data System (ADS)

    Fantasia, Alicia; Föllmi, Karl B.; Adatte, Thierry; Spangenberg, Jorge E.; Montero-Serrano, Jean-Carlos

    2015-04-01

    In the Jurassic period, the Early Toarcian Oceanic Anoxic Event (T-OAE), about 183 Ma ago, was a global perturbation of paleoclimatic and paleoenvironmental conditions. This episode was associated with a crisis in marine carbonate accumulation, climate warming, an increase in sea level, ocean acidification, enhanced continental weathering, whereas organic-rich sediments are noticeable for example in the Atlantic and in the Tethys. This episode is associated with a negative carbon excursion, which is recorded both in marine and terrestrial environments. The cause(s) of this environmental crisis remain(s) still controversial. Nevertheless, the development of negative δ13C excursions is commonly interpreted as due to the injection of isotopically-light carbon associated with gas hydrate dissociation, the thermal metamorphism of carbon-rich sediments and input of thermogenic and volcanogenic carbon related to the formation of the Karoo-Ferrar basaltic province in southern Gondwana (Hesselbo et al., 2000, 2007; Beerling et al., 2002; Cohen et al., 2004, 2007; McElwain et al., 2005, Beerling and Brentnall, 2007; Svensen et al., 2007; Hermoso et al., 2009, 2012; Mazzini et al., 2010). Several studies of the T-OAE have been conducted on sediments in central and northwest Europe, but only few data are available concerning the Swiss sedimentary records. Therefore, we focused on two sections in the Jura Plateau (canton Aargau): the Rietheim section (Montero-Serrano et al., submitted) and the Gipf section (current study). A multidisciplinary approach has been chosen and the tools to be used are based on sedimentological observations (sedimentary condensation, etc.), biostratigraphy, mineralogy (bulk-rock composition), facies and microfacies analysis (presence or absence of benthos), clay-mineralogy composition (climatic conditions), major and trace-element analyses (productivity, redox conditions, etc.), phosphorus (trophic levels, anoxia), carbon isotopes and organic

  18. ENVIRONMENTAL FACTORS INFLUENCING METHANOGENESIS IN A SHALLOW ANOXIC AQUIFER: A FIELD AND LABORATORY STUDY

    EPA Science Inventory

    The environmental factors influencing methanogenesis in a shallow anoxic aquifer were probed in a combined field and laboratory study. Field data collected over a year revealed that in situ rates of methane production were depressed in winter and elevated in summer. Over the same...

  19. Community shift from phototrophic to chemotrophic sulfide oxidation following anoxic holomixis in a stratified seawater lake.

    PubMed

    Pjevac, Petra; Korlević, Marino; Berg, Jasmine S; Bura-Nakić, Elvira; Ciglenečki, Irena; Amann, Rudolf; Orlić, Sandi

    2015-01-01

    Most stratified sulfidic holomictic lakes become oxygenated after annual turnover. In contrast, Lake Rogoznica, on the eastern Adriatic coast, has been observed to undergo a period of water column anoxia after water layer mixing and establishment of holomictic conditions. Although Lake Rogoznica's chemistry and hydrography have been studied extensively, it is unclear how the microbial communities typically inhabiting the oxic epilimnion and a sulfidic hypolimnion respond to such a drastic shift in redox conditions. We investigated the impact of anoxic holomixis on microbial diversity and microbially mediated sulfur cycling in Lake Rogoznica with an array of culture-independent microbiological methods. Our data suggest a tight coupling between the lake's chemistry and occurring microorganisms. During stratification, anoxygenic phototrophic sulfur bacteria were dominant at the chemocline and in the hypolimnion. After an anoxic mixing event, the anoxygenic phototrophic sulfur bacteria entirely disappeared, and the homogeneous, anoxic water column was dominated by a bloom of gammaproteobacterial sulfur oxidizers related to the GSO/SUP05 clade. This study is the first report of a community shift from phototrophic to chemotrophic sulfide oxidizers as a response to anoxic holomictic conditions in a seasonally stratified seawater lake. PMID:25344237

  20. Enhancement of post-anoxic denitrification for biological nutrient removal: effect of different carbon sources.

    PubMed

    Chen, Hong-bo; Wang, Dong-bo; Li, Xiao-ming; Yang, Qi; Zeng, Guang-ming

    2015-04-01

    Previous research has demonstrated that post-anoxic denitrification and biological nutrient removal could be achieved in the oxic/anoxic/extended-idle wastewater treatment regime. This study further investigated the effect of different carbon sources on post-anoxic denitrification and biological nutrient removal. Acetate, propionate (volatile fatty acids (VFAs)), glucose (carbohydrate), methanol, and ethanol (alcohol) were used as the sole carbon source, respectively. The experimental results showed that VFA substrates led to an improvement in nitrogen and phosphorus removal. The total nitrogen and phosphorus removal efficiency values driven by acetate achieved 93 and 99%, respectively. In contrast, glucose present in mixed liquor deteriorated total nitrogen and phosphorus removal efficiency values to 72 and 54%. In the reactors cultured with methanol and ethanol, 66 and 63% of the total nitrogen were removed, and phosphorus removal efficiency values were 78 and 71%, respectively. The mechanism studies revealed that different carbon sources affected the transformations of intracellular polyhydroxyalkanoates (PHAs) and glycogen. PHAs are the dominant storages for microorganisms cultured with VFA substrates. Though glycogen is not the favorable energy and carbon source for polyphosphate-accumulating organisms, it can be consumed by microorganisms related to biological nitrogen removal and is able to serve as the electron donor for post-anoxic denitrification. PMID:25354439

  1. Community Shift from Phototrophic to Chemotrophic Sulfide Oxidation following Anoxic Holomixis in a Stratified Seawater Lake

    PubMed Central

    Korlević, Marino; Berg, Jasmine S.; Bura-Nakić, Elvira; Ciglenečki, Irena; Amann, Rudolf; Orlić, Sandi

    2014-01-01

    Most stratified sulfidic holomictic lakes become oxygenated after annual turnover. In contrast, Lake Rogoznica, on the eastern Adriatic coast, has been observed to undergo a period of water column anoxia after water layer mixing and establishment of holomictic conditions. Although Lake Rogoznica's chemistry and hydrography have been studied extensively, it is unclear how the microbial communities typically inhabiting the oxic epilimnion and a sulfidic hypolimnion respond to such a drastic shift in redox conditions. We investigated the impact of anoxic holomixis on microbial diversity and microbially mediated sulfur cycling in Lake Rogoznica with an array of culture-independent microbiological methods. Our data suggest a tight coupling between the lake's chemistry and occurring microorganisms. During stratification, anoxygenic phototrophic sulfur bacteria were dominant at the chemocline and in the hypolimnion. After an anoxic mixing event, the anoxygenic phototrophic sulfur bacteria entirely disappeared, and the homogeneous, anoxic water column was dominated by a bloom of gammaproteobacterial sulfur oxidizers related to the GSO/SUP05 clade. This study is the first report of a community shift from phototrophic to chemotrophic sulfide oxidizers as a response to anoxic holomictic conditions in a seasonally stratified seawater lake. PMID:25344237

  2. Controlling anoxic tolerance in adult Drosophila via the cGMP–PKG pathway

    PubMed Central

    Dawson-Scully, K.; Bukvic, D.; Chakaborty-Chatterjee, M.; Ferreira, R.; Milton, S. L.; Sokolowski, M. B.

    2010-01-01

    In this study we identify a cGMP-dependent protein kinase (PKG) cascade as a biochemical pathway critical for controlling low-oxygen tolerance in the adult fruit fly, Drosophila melanogaster. Even though adult Drosophila can survive in 0% oxygen (anoxia) environments for hours, air with less than 2% oxygen rapidly induces locomotory failure resulting in an anoxic coma. We use natural genetic variation and an induced mutation in the foraging (for) gene, which encodes a Drosophila PKG, to demonstrate that the onset of anoxic coma is correlated with PKG activity. Flies that have lower PKG activity demonstrate a significant increase in time to the onset of anoxic coma. Further, in vivo pharmacological manipulations reveal that reducing either PKG or protein phosphatase 2A (PP2A) activity increases tolerance of behavior to acute hypoxic conditions. Alternatively, PKG activation and phosphodiesterase (PDE5/6) inhibition significantly reduce the time to the onset of anoxic coma. By manipulating these targets in paired combinations, we characterized a specific PKG cascade, with upstream and downstream components. Further, using genetic variants of PKG expression/activity subjected to chronic anoxia over 6 h, ~50% of animals with higher PKG activity survive, while only ~25% of those with lower PKG activity survive after a 24 h recovery. Therefore, in this report we describe the PKG pathway and the differential protection of function vs survival in a critically low oxygen environment. PMID:20581270

  3. Enrichment of denitrifying glycogen-accumulating organisms in anaerobic/anoxic activated sludge system.

    PubMed

    Zeng, Raymond J; Yuan, Zhiguo; Keller, Jürg

    2003-02-20

    Denitrifying glycogen-accumulating organisms (DGAO) were successfully enriched in a lab-scale sequencing batch reactor (SBR) running with anaerobic/anoxic cycles and acetate feeding during the anaerobic period. Acetate was completely taken up anaerobically, which was accompanied by the consumption of glycogen and the production of poly-beta-hydroxy-alkanoates (PHA). In the subsequent anoxic stage, nitrate or nitrite was utilized as electron acceptor for the oxidation of PHA, resulting in glycogen replenishment and cell growth. The above phenotype showed by the enrichment culture demonstrates the existence of DGAO. Further, it was found that the anaerobic behavior of DGAO could be predicted well by the anaerobic GAO model of Filipe et al. (2001) and Zeng et al. (2002a). The final product of denitrification during anoxic stage was mainly nitrous oxide (N(2)O) rather than N(2). The data strongly suggests that N(2)O production may be caused by the inhibition of nitrous oxide reductase by an elevated level of nitrite accumulated during denitrification. The existence of these organisms is a concern in biological nutrient removal systems that typically have an anaerobic/anoxic/aerobic reactor sequence since they are potential competitors to the polyphosphate-accumulating organisms. PMID:12491525

  4. Electrophysiological Correlates of Deficient Encoding in a Case of Post-Anoxic Amnesia

    ERIC Educational Resources Information Center

    Lehmann, Sandra; Morand, Stephanie; James, Clara; Schnider, Armin

    2007-01-01

    Little is known about the initial stages of information processing in amnesia as compared to normal memory. In this study, we used electrical spatiotemporal mapping to compare cortical activation during encoding and recognition in a 56-year-old patient with severe, chronic post-anoxic amnesia and an age-matched control group. Event-related…

  5. Open Questions on the Origin of Life at Anoxic Geothermal Fields

    NASA Astrophysics Data System (ADS)

    Mulkidjanian, Armen Y.; Bychkov, Andrew Yu.; Dibrova, Daria V.; Galperin, Michael Y.; Koonin, Eugene V.

    2012-10-01

    We have recently reconstructed the `hatcheries' of the first cells by combining geochemical analysis with phylogenomic scrutiny of the inorganic ion requirements of universal components of modern cells (Mulkidjanian et al. Proc Natl Acad Sci U S A 109:E821-830, 2012). These ubiquitous, and by inference primordial, proteins and functional systems show affinity to and functional requirement for K+, Zn2+, Mn2+, and phosphate. Thus, protocells must have evolved in habitats with a high K+/Na+ ratio and relatively high concentrations of Zn, Mn and phosphorous compounds. Geochemical reconstruction shows that the ionic composition conducive to the origin of cells could not have existed in marine settings but is compatible with emissions of vapor-dominated zones of inland geothermal systems. Under an anoxic, CO2-dominated atmosphere, the ionic composition of pools of cool, condensed vapor at anoxic geothermal fields would resemble the internal milieu of modern cells. Such pools would be lined with porous silicate minerals mixed with metal sulfides and enriched in K+ ions and phosphorous compounds. Here we address some questions that have appeared in print after the publication of our anoxic geothermal field scenario. We argue that anoxic geothermal fields, which were identified as likely cradles of life by using a top-down approach and phylogenomics analysis, could provide geochemical conditions similar to those which were suggested as most conducive for the emergence of life by the chemists who pursuit the complementary bottom-up strategy.

  6. DEGRATION OF SELECTED HALOGENATED ETHANES IN ANOXIC SEDIMENT-WATER SYSTEMS

    EPA Science Inventory

    The degradation of selected halogenated ethanes was studied in anoxic sediment-water suspensions at 1 to 20% sediment concentrations. Batch kinetic experiments were used to quantify decay. Eh measurements of all suspensions were below -100mV (vs SHE), indicating reduced environme...

  7. On the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge

    SciTech Connect

    Schramm, A.; Santegoeds, C.M.; Nielsen, H.K.; Ploug, H.; Wagner, M.; Pribyl, M.; Wanner, J.; Amann, R.; De Beer, D.

    1999-09-01

    A combination of different methods was applied to investigate the occurrence of anaerobic processes in aerated activated sludge. Microsensor measurements (O{sub 2}, NO{sub 2}{sup {minus}}, NO{sub 3}{sup {minus}}, and H{sub 2}S) were performed on single sludge flocs to detect anoxic niches, nitrate reduction, or sulfate reduction on a microscale. Incubations of activated sludge with {sup 15}NO{sub 3}{sup {minus}} and {sup 35}SO{sub 4}{sup 2{minus}} were used to determine denitrification and sulfate reduction rates on a batch scale. In four of six investigated sludges, no anoxic zones developed during aeration, and consequently denitrification rates were very low. However, in two sludges anoxia in flocs coincided with significant denitrification rates. Sulfate reduction could not be detected in any sludge in either the microsensor or the batch investigation, not even under short-term anoxic conditions. In contrast, the presence of sulfate-reducing bacteria was shown by fluorescence in situ hybridization with 16S rRNA-targeted oligonucleotide probes and by PCR-based detection of genes coding for the dissimilatory sulfite reductase. A possible explanation for the absence of advection, i.e., facilitated by flow through pores and channels. This possibility is suggested by the irregularity of some oxygen profiles and by confocal laser scanning microscopy of the three-dimensional floc structures, which showed that flocs from the two sludges in which anoxic zones were found were apparently denser than flocs from the other sludges.

  8. ENVIRONMENTAL FACTORS INFLUENCING METHANOGENESIS IN A SHALLOW ANOXIC AQUIFER: A FIELD AND LABORATORY STUDY

    EPA Science Inventory

    The environmental factors influencing methanogenesis in a shallow anoxic aquifer were probed in a combined field and laboratory study. Field data collected over a year revealed that "in situ" rates of methane production were depressed in winter and elevated in summer. Over the sa...

  9. South Atlantic sag basins: new petroleum system components

    SciTech Connect

    Henry, S.G. Mohriak, W.U.; Mello, M.R.

    1996-08-01

    Newly discovered pre-salt source rocks, reservoirs and seals need to be included as components to the petroleum systems of both sides of the South Atlantic. These new components lie between the pre-salt rift strata and the Aptian salt layers, forming large, post-rift, thermal subsidence sag basins. These are differentiated from the older rift basins by the lack of syn-rift faulting and a reflector geometry that is parallel to the base salt regional unconformity rather than to the Precambrian basement. These basins are observed in deep water regions overlying areas where both the mantle and the crust have been involved in the extension. This mantle involvement creates post-rift subsiding depocenters in which deposition is continuous while proximal rift-phase troughs with little or no mantle involvement are bypassed and failed to accumulate potential source rocks during anoxic times. These features have been recognized in both West African Kwanza Basin and in the East Brasil Rift systems. The pre-salt source rocks that are in the West African sag basins were deposited in lacustrine brackish to saline water environment and are geochemically distinct from the older, syn-rift fresh to brackish water lakes, as well as from younger, post-salt marine anoxic environments of the drift phase. Geochemical analyses of the source rocks and their oils have shown a developing source rock system evolving from isolated deep rift lakes to shallow saline lakes, and culminating with the infill of the sag basin by large saline lakes to a marginally marine restricted gulf. Sag basin source rocks may be important in the South Atlantic petroleum system by charging deep-water prospects where syn-rift source rocks are overmature and the post-salt sequences are immature.

  10. Internal Ca2+ stores involved in anoxic responses of rat hippocampal neurons.

    PubMed Central

    Belousov, A B; Godfraind, J M; Krnjević, K

    1995-01-01

    1. During whole-cell recordings from CA1 neurons of rat brain slices with electrodes containing only KMeSO4 and Hepes, brief anoxia (2-3 min) consistently evoked a hyperpolarization (delta V approximately 14 mV) and reduction in input resistance (delta R approximately -20%). 2. As in previous intracellular recordings, Dantrolene sodium (10 microM) suppressed the anoxic delta V and delta R, confirming the release of internal Ca2+ is a major component of the anoxic response. 3. To identify the relevant intracellular Ca2+ store, other blockers of Ca2+ release were applied either externally (in the bath) or internally, by addition to the contents of the recording electrode. 4. The anoxic hyperpolarization was abolished or much reduced by heparin (10-20 micrograms ml-1, internal), thapsigargin (10 microM, external), Ruthenium Red (50 microM, internal) and external procaine (0.5-2 mM), but not by internal procaine (0.5-1 mM) or ryanodine (10 microM, external). 5. The anoxic fall in resistance was also abolished or reduced by heparin, thapsigargin and external procaine, but not by ryanodine, internal procaine or Ruthenium Red. 6. In addition, external procaine (0.5-2 mM) eliminated the early (transient) depolarization and reduced the post-anoxic hyperpolarization by 60 +/- 22%. 7. None of these agents consistently changed the resting potential, but the input resistance was significantly increased by Dantrolene and external procaine. 8. In view of the marked effects of heparin and thapsigargin, but not ryanodine and internal procaine, we conclude that the anoxic response seen in such whole-cell recordings is initiated predominantly by Ca2+ release from an internal store that is InsP3 sensitive rather than Ca2+ sensitive. 9. Comparable but less pronounced effects of external procaine were seen during intracellular recordings with 3 M KCl-containing electrodes. The dose-dependent suppression of various features of the anoxic response by external procaine (EC50 approximately

  11. Open Questions on the Origin of Life at Anoxic Geothermal Fields

    PubMed Central

    Mulkidjanian, Armen Y.; Bychkov, Andrew Yu.; Dibrova, Daria V.; Galperin, Michael Y.; Koonin, Eugene V.

    2014-01-01

    We have recently reconstructed the ‘hatcheries’ of the first cells by combining geochemical analysis with phylogenomic scrutiny of the inorganic ion requirements of universal components of modern cells (Mulkidjanian et al.: Origin of first cells at terrestrial, anoxic geothermal fields. Proc Natl Acad Sci USA 2012, 109:E821–830). These ubiquitous, and by inference primordial, proteins and functional systems show affinity to and functional requirement for K+, Zn2+, Mn2+, and phosphate. Thus, protocells must have evolved in habitats with a high K+/Na+ ratio and relatively high concentrations of Zn, Mn and phosphorous compounds. Geochemical reconstruction shows that the ionic composition conducive to the origin of cells could not have existed in marine settings but is compatible with emissions of vapor-dominated zones of inland geothermal systems. Under anoxic, CO2-dominated atmosphere, the ionic composition of pools of cool, condensed vapor at anoxic geothermal fields would resemble the internal milieu of modern cells. Such pools would be lined with porous silicate minerals mixed with metal sulfides and enriched in K+ ions and phosphorous compounds. Here we address some questions that have appeared in print after the publication of our anoxic geothermal field scenario. We argue that anoxic geothermal fields, which were identified as likely cradles of life by using a top-down approach and phylogenomics analysis as a tool, could provide geochemical conditions similar to those which were suggested as most conducive for the emergence of life by the chemists who pursuit the complementary bottom-up strategy. PMID:23132762

  12. Occurrence of zebra mussels in near-shore areas of western Lake Erie

    USGS Publications Warehouse

    Custer, Christine M.; Custer, T.W.

    1997-01-01

    Zebra mussels (Dreissena polymorpha) invaded the Great Lakes in the mid-1980s and quickly reached high densities. The objective of this study was to determine current consumption of zebra mussels by waterfowl in the Great Lakes region. Feeding Lesser Scaups (Aythya affinis), Greater Scaups (A. marila), Canvasbacks (A. valisineria), Redheads (A. americana), Buffleheads (Bucephala albeola) and Common Goldeneyes (B. clangula) were collected in western Lake Erie and in Lake St. Clair between fall and spring, 1992-1993 to determine food habits. All 10 Redheads, 97% of Lesser Scaups, 83% of Goldeneyes, 60% of Buffleheads and 9% of Canvasbacks contained one or more zebra mussels in their upper gastrointestinal tracts. The aggregate percent of zebra mussels in the diet of Lesser Scaups was higher in Lake Erie (98.6%) than in Lake St. Clair (54.4%). Zebra mussels, (aggregate percent) dominated the diet of Common Goldeneyes (79.2%) but not in Buffleheads (23.5%), Redheads (21%) or Canvasbacks (9%). Lesser Scaups from Lake Erie fed on larger zebra mussels ( = 10.7 i?? 0.66 mm SE) than did Lesser Scaups from Lake St. Clair ( = 4.4 i?? 0.22 mm). Lesser Scaups, Buffleheads and Common Goldeneyes from Lake Erie consumed zebra mussels of similar size.

  13. Occurrence and orientation of anorbital ripples in near-shore sands

    NASA Astrophysics Data System (ADS)

    Maier, Irene; Hay, Alex E.

    2009-12-01

    The orientation of linear transition ripples (LTRs) relative to incident wave direction is studied using rotary fan beam sonar images and wave and current data from electromagnetic flowmeters in ˜3 m water during SandyDuck97. LTR occurrence is determined objectively with an automatic recognition algorithm. LTRs occurred for RMS wave orbital velocities between 0.15 and 0.35 m s-1. The ripples were highly two dimensional, and of the anorbital type (λ0/D50 = 524 to 535, d0/D50 = 4300 to 25,000) with 7.6 cm mean wavelength in 150 μm median diameter sand. The ripple crests were typically aligned perpendicular to the incident sea-and-swell direction: specifically, about 60% of the normals to the crests differ from wave direction by less than 5° and more than 90% by less than 10°. During rapid changes in wave direction, however, ripple orientation adjustment lagged the wave direction by O(1 h). Ripple reorientation occurred piecewise along the crests, with new crest segments sometimes bridging two or more old segments. The 1 h reorientation time scale is longer by several orders of magnitude than the adjustment time based on theoretical bed load transport rate and the ripple volume. As a possible explanation, we suggest that a significant fraction of the transport, more than 90%, bypasses the ripples during orientation adjustment through large angles.

  14. A Quick Response Forecasting Model of Pathogen Transport and Inactivation in Near-shore Regions

    NASA Astrophysics Data System (ADS)

    Liu, L.; Fu, X.

    2011-12-01

    Modeling methods supporting water quality assessments play a critical role by facilitating people to understand and promptly predict the potential threat of waterborne bacterial pathogens pose to human health. A mathematical model to describe and predict bacterial levels can provide foundation for water managers in making decisions on whether a water system is safe to open to the public. The inactivation (decay or die-off) rate of bacteria is critical in a bacterial model by controlling bacterial concentration in waters and depends on numerous factors of hydrodynamics, meteorology, geology, chemistry and biology. Transport and fate of waterborne pathogens in fresh water systems is an essentially three-dimensional problem, which requires a coupling of hydrodynamic equations and transport equations that describe the pathogen and suspended sediment dynamics. However, such an approach could be very demanding and time consuming from a practical point of view due to excess computational efforts. Long computation time may lead people unintentionally drinking or swimming in the contaminated water during the period before the predictive results of water quality come out. Therefore, it is very necessary to find a quick-response model to forecast bacterial concentration instantly to protect human health without any delay. Nearshore regions are the most commonly and directly used area for people in a huge water system. The prior multi-dimensional investigations of E. Coli and Enterococci inactivation in literature indicate that along-shore current predominated the nearshore region. Consequently, the complex dynamic conditions may be potentially simplified to one-dimensional scenario. In this research, a one-dimensional model system coupling both hydrodynamic and bacterial transport modules is constructed considering different complex processes to simulate the transport and fate of pathogens in nearshore regions. The quick-response model mainly focuses on promptly forecasting purpose and will be verified and calibrated with the available data collected from southern Lake Michigan. The modeling results will be compared with those from prior multi-dimensional models. This model is specifically effective for the outfall-controlled waters, where pathogens are primarily predominated by loadings from nearby tributaries and tend to show wide variations in concentrations.

  15. DEVELOPMENT OF NEAR-SHORE HYDRODYNAMIC MODELS FOR BEACH CLOSURE FORECASTING IN THE GREAT LAKES

    EPA Science Inventory

    Water quality managers and other planning and decision entities are increasingly calling for up-to-the-minute data on present water quality conditions or forecasts of these data that can be used to adjust or respond to quickly developing activities with environmental implications...

  16. Assessment of the hydrogeology and water quality in a near-shore well field, Sarasota, Florida

    USGS Publications Warehouse

    Broska, J.C.; Knochenmus, L.A.

    1996-01-01

    The city of Sarasota, Florida, operates a downtown well field that pumps mineralized water from ground water sources to supply a reverse osmosis plant. Because of the close proximity of the well field to Sarasota Bay and the high sulfate and chloride concentrations of ground-water supplies, a growing concern exists about the possibility of lateral movement of saltwater in a landward direction (intrusion) and vertical movement of relict sea water (upconing). In 1992, the U.S. Geological Survey began a 3-year study to evaluate the hydraulic characteristics and water quality of ground-water resources within the downtown well field and the surrounding 235-square-mile study area. Delineation of the hydrogeology of the study area was based on water- quality data, aquifer test data, and extensive borehole geophysical surveys (including gamma, caliper, temperature, electrical resistivity, and flow meter logs) from the six existing production wells and from a corehole drilled as part of the study, as well as from published and unpublished reports on file at the U.S. Geological Survey, the Southwest Florida Water Management District, and consultant's reports. Water-quality data were examined for spatial and temporal trends that might relate to the mechanism for observed water-quality changes. Water quality in the study area appears to be dependent upon several mechanisms, including upconing of higher salinity water from deeper zones within the aquifer system, interbore-hole flow between zones of varying water quality through improperly cased and corroded wells, migration of highly mineralized waters through structural deformities, and the presence of unflushed relict seawater. A numerical ground-water flow model was developed as an interpretative tool where field-derived hydrologic characteristics could be tested. The conceptual model consisted of seven layers to represent the multilayered aquifer systems underlying the study area. Particle tracking was utilized to delineate the travel path of water as it enters the model area under a set of given conditions. Within the model area, simulated flow in the intermediate aquifer system originates primarily from the northwestern boundary. Simulated flow in the Upper Floridan aquifer originates in lower model layers (deeper flow zones) and ultimately can be traced to the southeastern and northwestern boundaries. Volumetric budgets calculated from numerical simulation of a hypothetical well field indicate that the area of contribution to the well field changes seasonally. Although ground-water flow patterns change with wet and dry seasons, most water enters the well-field flow system through lower parts of the Upper Floridan aquifer from a southeastern direction. Moreover, particle tracking indicated that ground-water flow paths with strictly lateral pathlines in model layers correspond to the intermediate aquifer system, whereas particles traced through model layers corresponding to the Upper Floridan aquifer had components of vertical and lateral flow.

  17. Near-shore distribution of heavy metals in the Albanian part of Lake Ohrid.

    PubMed

    Malaj, Egina; Rousseau, Diederik P L; Du Laing, Gijs; Lens, Piet N L

    2012-04-01

    The heavy metal contamination in Lake Ohrid, a lake shared between Albania and Macedonia, was studied. Lake Ohrid is believed to be one of the oldest lakes in the world, with a large variety of endemic species. Different anthropogenic pressures, especially heavy metal influxes from mining activities, might have influenced the fragile equilibrium of the lake ecosystem. Heavy metal concentrations in water, sediment, emergent vegetation, and fish were investigated at selected sites of the lake and a study of the heavy metals in five tributaries was conducted. The lake surface water was found to have low levels of heavy metals, but sediments contained very high levels mostly near river mouths and mineral dump areas with concentrations reaching 1,501 mg/kg for Ni, 576 mg/kg for Cr, 116.8 mg/kg for Co and 64.8 g/kg for Fe. Sequential extraction of metals demonstrates that heavy metals in the sediment are mainly present in the residual fraction varying from 75% to 95% in different sites. High heavy metal levels (400 mg/kg Ni, 89 mg/kg Cr, and 39 mg/kg Co) were found in plants (stem of Phragmites australis), but heavy metals could not be detected in fish tissue (gill, muscle, and liver of Salmo letnica and Salmothymus ohridanus). PMID:21541777

  18. Gridless simulations of splashing processes and near-shore bore propagation

    NASA Astrophysics Data System (ADS)

    Landrini, M.; Colagrossi, A.; Greco, M.; Tulin, M. P.

    The generation and evolution of two-dimensional bores in water of uniform depth and on sloping beaches are simulated through numerical solution of the Euler equations using the smoothed particle hydrodynamics (SPH) method, wherein particles are followed in Lagrangian fashion, avoiding the need for computational grids. In water of uniform depth, a piston wavemaker produces cyclically breaking bores in the Froude number range 1.37-1.82, which were shown to move at time-averaged speeds in very good agreement with the requirements of global mass and momentum conservation. A single Strouhal number for the breaking period was discovered. Complex repetitive splashing patterns are observed and described, involving forward jet formation growth, impact and ricochet, and similarly, backward jet formation and impact. Observed consequences were the creation of vortical regions of both signs, dipole creation through pairing, large-scale transport of surface water downward and high tangential scouring velocities on the bed, which are quantified. These bores are further allowed to rise on linear slopes to the shoreline, where they are seen to collapse into a tongue-like flow resembling dam-break evolution.This essentially inviscid calculation is able to reproduce the development of a highly vortical flow in excellent agreement with experimental observations and theoretical concepts. The turbulent flow behaviour is partially described by the numerical solution.

  19. ACOUSTIC IDENTIFICATION OF NEAR-SHORE SUBSTRATES IN THE GREAT LAKES

    EPA Science Inventory

    Geo-referenced acoustic information is being used more often in research as a viable tool for everything from simple bathymetry to fisheries research and paleo-sediment studies. In the summer of 2002 geo-referenced acoustic soundings (QTC 4?) were recorded for ~20 km of lake bot...

  20. Radiocarbon and stable carbon isotopic evidence for microbial control of carbon supply to Orca Basin brine pool, Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Shah, S. R.; McNichol, A. P.; Joye, S. B.

    2012-12-01

    Orca Basin is an intraslope basin on the continental slope off Louisiana, formed by upward-moving salt diapirs and filled with 200m-thick anoxic brine (1). Elevated concentrations of dissolved inorganic (DIC) and organic carbon (DOC) are observed, depleted in both 13C and 14C compared to overlying seawater. Model results show that the isotopic composition of DIC cannot result from the aging of an isolated reservoir or conservative mixing of an aged brine end-member with seawater. Instead it requires the addition of significant inorganic carbon from microbial re-mineralization of sinking particulate organic matter and methane, highlighting a microbial role in creating a reservoir of 14C-depleted DIC and DOC in the Gulf of Mexico. (1) Shokes et al. (1979) Anoxic, Hypersaline Basin in the Northern Gulf of Mexico. Science 196, 1443-1446.

  1. Aerobic methanotrophs drive the formation of a seasonal anoxic benthic nepheloid layer in monomictic Lake Lugano

    NASA Astrophysics Data System (ADS)

    Blees, Jan; Niemann, Helge; Wenk, Christine B.; Zopfi, Jacob; Schubert, Carsten J.; Jenzer, Joël S.; Veronesi, Mauro L.; Lehmann, Moritz F.

    2014-05-01

    In the southern basin of Lake Lugano, thermal stratification of the water column during summer and autumn leads to a lack of exchange between surface and deep water masses, and consequently to seasonal bottom water anoxia, associated with high methane concentrations. With the onset of bottom water anoxia, a dense layer of high particulate matter concentration - a so-called benthic nepheloid layer (BNL) - develops in the bottom waters. A sharp redox gradient marks the upper boundary of the BNL. At its maximum, the BNL extends 15 - 30 m from the sediment into the water column. We investigated the identity of the BNL and key environmental factors controlling its formation in the framework of a seasonal study. Compound specific C-isotope measurements and Fluorescence In Situ Hybridisation (FISH) of suspended particulate organic matter, radioactive tracer based measurements of methane oxidation, as well as investigation of geochemical water column parameters were performed in spring and autumn. Our analyses revealed that the microbial biomass within the BNL is dominated by methanotrophic bacteria. Aerobic methane oxidation (MOx) was restricted to a narrow zone at the top of the BNL, reaching maximum rates of up to 1.8 μM/day. The rates of MOx activity effectively consumed most (>99%) of the uprising methane, leading to the formation of a sharp CH4 concentration gradient and a strongly suppressed kinetic isotope effect (ɛ = -2.8o). CH4 oxidation was limited by the diffusive supply of O2 from the upper hypolimnion, implying that methanotrophy is the primary driver of the seasonal expansion of the anoxic bottom water volume, and explaining the vertical migration of the BNL in response to its own O2 consumption. The bulk organic matter extracted from the BNL was strongly depleted in 13C (δ13C < -60o), providing evidence for the incorporation of CH4-derived carbon into the biomass, suggesting that the BNL was composed of MOx-communities. This was further evidenced by four

  2. Black shale deposition, atmospheric CO2 drawdown, and cooling during the Cenomanian-Turonian Oceanic Anoxic Event

    NASA Astrophysics Data System (ADS)

    Jarvis, Ian; Lignum, John S.; GröCke, Darren R.; Jenkyns, Hugh C.; Pearce, Martin A.

    2011-09-01

    Oceanic Anoxic Event 2 (OAE2), spanning the Cenomanian-Turonian boundary (CTB), represents one of the largest perturbations in the global carbon cycle in the last 100 Myr. The δ13Ccarb, δ13Corg, and δ18O chemostratigraphy of a black shale-bearing CTB succession in the Vocontian Basin of France is described and correlated at high resolution to the European CTB reference section at Eastbourne, England, and to successions in Germany, the equatorial and midlatitude proto-North Atlantic, and the U.S. Western Interior Seaway (WIS). Δ13C (offset between δ13Ccarb and δ13Corg) is shown to be a good pCO2 proxy that is consistent with pCO2 records obtained using biomarker δ13C data from Atlantic black shales and leaf stomata data from WIS sections. Boreal chalk δ18O records show sea surface temperature (SST) changes that closely follow the Δ13C pCO2 proxy and confirm TEX86 results from deep ocean sites. Rising pCO2 and SST during the Late Cenomanian is attributed to volcanic degassing; pCO2 and SST maxima occurred at the onset of black shale deposition, followed by falling pCO2 and cooling due to carbon sequestration by marine organic productivity and preservation, and increased silicate weathering. A marked pCO2 minimum (˜25% fall) occurred with a SST minimum (Plenus Cold Event) showing >4°C of cooling in ˜40 kyr. Renewed increases in pCO2, SST, and δ13C during latest Cenomanian black shale deposition suggest that a continuing volcanogenic CO2 flux overrode further drawdown effects. Maximum pCO2 and SST followed the end of OAE2, associated with a falling nutrient supply during the Early Turonian eustatic highstand.

  3. Marine 187Os/188Os isotope stratigraphy reveals the interaction of volcanism and ocean circulation during Oceanic Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    Du Vivier, Alice D. C.; Selby, David; Sageman, Bradley B.; Jarvis, Ian; Gröcke, Darren R.; Voigt, Silke

    2014-03-01

    High-resolution osmium (Os) isotope stratigraphy across the Cenomanian-Turonian Boundary Interval from 6 sections for four transcontinental settings has produced a record of seawater chemistry that demonstrates regional variability as a function of terrestrial and hydrothermal inputs, revealing the impact of palaeoenvironmental processes. In every section the 187Os/188Os profiles show a comparable trend; radiogenic values in the lead up to Oceanic Anoxic Event 2 (OAE 2); an abrupt unradiogenic trend at the onset of OAE 2; an unradiogenic interval during the first part of OAE 2; and a return to radiogenic values towards the end of the event, above the Cenomanian-Turonian boundary. The unradiogenic trend in 187Os/188Os is synchronous in all sections. Previous work suggests that activity of the Caribbean LIP (Large Igneous Province) was the source of unradiogenic Os across the OAE 2 and possibly an instigator of anoxia in the oceans. Here we assess this hypothesis and consider the influence of activity from other LIPs; such as the High Arctic LIP. A brief shift to high radiogenic 187Os/188Os values occurred in the Western Interior Seaway before the onset of OAE 2. We evaluate this trend and suggest that a combination of factors collectively played critical roles in the initiation of OAE 2; differential input of nutrients from continental and volcanogenic sources, coupled with efficient palaeocirculation of the global ocean and epeiric seas, enhanced productivity due to higher nutrient availability, which permitted penecontemporaneous transport of continental and LIP-derived nutrients to trans-equatorial basins.

  4. Parana basin

    SciTech Connect

    Zalan, P.V.; Wolff, S.; Conceicao, J.C.J.; Vieira, I.S.; Astolfi, M.A.; Appi, V.T.; Zanotto, O.; Neto, E.V.S.; Cerqueira, J.R.

    1987-05-01

    The Parana basin is a large intracratonic basin in South America, developed entirely on continental crust and filled with sedimentary and volcanic rocks ranging in age from Silurian to Cretaceous. It occupies the southern portion of Brazil (1,100,000 km/sup 2/ or 425,000 mi/sup 2/) and the eastern half of Paraguay (100,000 km/sup 2/ or 39,000 mi/sup 2/); its extension into Argentina and Uruguay is known as the Chaco-Parana basin. Five major depositional sequences (Silurian, Devonian, Permo-Carboniferous, Triassic, Juro-Cretaceous) constitute the stratigraphic framework of the basin. The first four are predominantly siliciclastic in nature, and the fifth contains the most voluminous basaltic lava flows of the planet. Maximum thicknesses are in the order of 6000 m (19,646 ft). The sequences are separated by basin wide unconformities related in the Paleozoic to Andean orogenic events and in the Mesozoic to the continental breakup and sea floor spreading between South America and Africa. The structural framework of the Parana basin consists of a remarkable pattern of criss-crossing linear features (faults, fault zones, arches) clustered into three major groups (N45/sup 0/-65/sup 0/W, N50/sup 0/-70/sup 0/E, E-W). The northwest- and northeast-trending faults are long-lived tectonic elements inherited from the Precambrian basement whose recurrent activity throughout the Phanerozoic strongly influenced sedimentation, facies distribution, and development of structures in the basin. Thermomechanical analyses indicate three main phases of subsidence (Silurian-Devonian, late Carboniferous-Permian, Late Jurassic-Early Cretaceous) and low geothermal gradients until the beginning of the Late Jurassic Permian oil-prone source rocks attained maturation due to extra heat originated from Juro-Cretaceous igneous intrusions. The third phase of subsidence also coincided with strong tectonic reactivation and creation of a third structural trend (east-west).

  5. Miocene benthic foraminifera from Nosy Makamby and Amparafaka, Mahajanga Basin, northwestern Madagascar

    NASA Astrophysics Data System (ADS)

    Ramihangihajason, Tolotra N.; Andrianavalona, Tsiory H.; Razafimbelo, Rachel; Rahantarisoa, Lydia; Ali, Jason R.; Samonds, Karen E.

    2014-12-01

    Madagascar is well known for its fossil deposits and hosts one of the world's most important Upper Cretaceous terrestrial faunal sites (in the Mahajanga and Morondava Basins in the west and northwest of the island). Cenozoic marine fossils are also described from Madagascar, but these have received far less attention from the paleontological community, with most of this work dating from the 19th and early 20th centuries. Our study reports a new comprehensive microfossil assemblage from a Miocene sequence on the island of Nosy Makamby. After washing, sieving and sorting (∼30 kg), twenty-five genera of foraminifera were identified including Alveolina, Ammodiscus, Ammonia, Archaias, Bolivina, Borelis, Cassidulina, Cyclammina, Cycloforina, Dentalina, Elphidium, Hauerina, Lagena, Lepidocyclina, Nodosaria, Nonion, Nonionella, Peneroplis, Pyrgo, Quinqueloculina, Rhabdammina, Spirillina, Spirolina, Spiroloculina and Triloculina. Ostracods are found in association with the foraminifera, as well as many other macroinvertebrate fossils (including bivalves, gastropods, and echinoids) in addition to vertebrate fossils. Together, the assemblage indicates that during the late Miocene, Nosy Makamby was a tropical, near-shore environment, probably similar to that seen today. Furthermore, the existence of epiphytic foraminiferans (e.g., Elphidium) suggests that sea-grass beds were likely present.

  6. Nature and significance of Austin-Taylor unconformity on western margin of east Texas basin

    SciTech Connect

    Surles, M.A. Jr.

    1984-04-01

    The Taylor Marl unconformably overlies the Austin Chalk on the western margin of the East Texas basin. Along this contact, up to 275 ft (84 m) of upper Austin is missing in the Waco area and up to 450 ft (137 m) in Bell County. However, the Austin Chalk appears to have been more-or-less uniformly deposited throughout the study area. Apparently regional uplift caused a regression that terminated Austin deposition and was related to the erosion of the upper Chalk. While the unconformity is areally extensive, slightly angular, and accounts for a relatively long period of time, the mechanism of erosion that caused the unconformity is still uncertain. Erosion was terminated by the deposition of the lower Taylor Marl. Taylor A, the lowermost subdivision of the lower Taylor, was deposited in a near-shore environment that was highly variable. Of particular interest is the relationship of this unconformity to structure and probably to oil occurrence in the Austin Chalk in McLennan and Falls Counties. Major Austin fracturing, which apparently does not extend into the Taylor in Falls County, clearly indicates that structure in the Chalk, at least in part, antedates Taylor deposition. Oil occurrence in the Chalk is clearly related to fracturing and probably is localized by post-Austin-pre-Taylor fracture systems.

  7. Genesis of selected Triassic basins on the Italian peninsula: Their origin and hydrocarbon potential

    SciTech Connect

    Rigo de Righi, L.L.

    1990-01-01

    The paleogeographic evolution of the southern Alpine Lombardy Basin, the Central Adriatic Pescara Basin, and the Sicilian Ragusa Basin in Italy document the depositional and structural evolution of the Mesozoic Apulian Plate. These Mesozoic basins formed as a response to the Jurassic opening of the Tethyan Ocean. Due to their respective position in relation to the Mesozoic Tethyan spreading center, each of the three basins formed with unique structural entities. The Mesozoic paleogeographic history of the Lombardy Basin suggests that it initially formed a continental arc basin on the northern margin of the Apulian Plate. As Tethyan rifting progressed, the basin subsequently evolved into an Early Jurassic passive continental rift margin. The Pescara Basin, with its central Apulian paleogeographic location, developed as a Tethyan rift basin in the Jurassic. The Ragusa Basin represents Mesozoic developments along the southern portion of the Apulian Plate. Depositionally, paleohighs and periods of tectonic stability are typically represented by extensive carbonate platform deposits. Within these carbonate platforms incipient stages of faulting are characterized by shallow anoxic lagoonal deposits. These structurally weak ones were subsequently incorporated within the Tethyan Jurassic rift. Synrift deposits are predominantly characterized by thick sequences of Jurassic and Cretaceous pelagic carbonates.

  8. Nutrients as the dominant control on the spread of anoxia and euxinia across the Cenomanian-Turonian oceanic anoxic event (OAE2): Model-data comparison

    NASA Astrophysics Data System (ADS)

    Monteiro, F. M.; Pancost, R. D.; Ridgwell, A.; Donnadieu, Y.

    2012-12-01

    The Cenomanian-Turonian oceanic anoxic event (OAE2) is characterized by large perturbations in the oxygen and sulfur cycles of the ocean, potentially resulting from changes in oxygen supply (via oxygen solubility and ocean circulation) and in marine productivity. We assess the relative impact of these mechanisms, comparing model experiments with a new compilation of observations for seafloor dysoxia/anoxia and photic zone euxinia. The model employed is an intermediate-complexity Earth system model which accounts for the main ocean dynamics and biogeochemistry of the Cretaceous climate. The impact of higher temperature and marine productivity is evaluated in the model as a result of higher atmospheric carbon dioxide and oceanic nutrient concentrations. The model shows that temperature is not alone able to reproduce the observed patterns of oceanic redox changes associated with OAE2. Observations are reproduced in the model mainly via enhanced marine productivity due to higher nutrient content (responsible for 85% of the change). Higher phosphate content could have been sustained by increased chemical weathering and phosphorus regeneration from anoxic sediments, which in turn induced an enhanced nitrogen nutrient content of the ocean via nitrogen fixation. The model also shows that the presence of seafloor anoxia, as suggested by black-shale deposition in the proto-North Atlantic Ocean before the event, might be the result of the silled shape and lack of deep-water formation of this basin at the Late Cretaceous. Overall our model-data comparison shows that OAE2 anoxia was quasi-global spreading from 5% of the ocean volume before the event to at least 50% during OAE2.

  9. Multiple S-isotopic evidence for episodic shoaling of anoxic water during Late Permian mass extinction

    PubMed Central

    Shen, Yanan; Farquhar, James; Zhang, Hua; Masterson, Andrew; Zhang, Tonggang; Wing, Boswell A.

    2011-01-01

    Global fossil data show that profound biodiversity loss preceded the final catastrophe that killed nearly 90% marine species on a global scale at the end of the Permian. Many hypotheses have been proposed to explain this extinction and yet still remain greatly debated. Here, we report analyses of all four sulphur isotopes (32S, 33S, 34S and 36S) for pyrites in sedimentary rocks from the Meishan section in South China. We observe a sulphur isotope signal (negative δ34S with negative Δ33S) that may have resulted from limitation of sulphate supply, which may be linked to a near shutdown of bioturbation during shoaling of anoxic water. These results indicate that episodic shoaling of anoxic water may have contributed to the profound biodiversity crisis before the final catastrophe. Our data suggest a prolonged deterioration of oceanic environments during the Late Permian mass extinction. PMID:21343928

  10. Multiple S-isotopic evidence for episodic shoaling of anoxic water during Late Permian mass extinction.

    PubMed

    Shen, Yanan; Farquhar, James; Zhang, Hua; Masterson, Andrew; Zhang, Tonggang; Wing, Boswell A

    2011-01-01

    Global fossil data show that profound biodiversity loss preceded the final catastrophe that killed nearly 90% marine species on a global scale at the end of the Permian. Many hypotheses have been proposed to explain this extinction and yet still remain greatly debated. Here, we report analyses of all four sulphur isotopes ((32)S, (33)S, (34)S and (36)S) for pyrites in sedimentary rocks from the Meishan section in South China. We observe a sulphur isotope signal (negative δ(34)S with negative Δ(33)S) that may have resulted from limitation of sulphate supply, which may be linked to a near shutdown of bioturbation during shoaling of anoxic water. These results indicate that episodic shoaling of anoxic water may have contributed to the profound biodiversity crisis before the final catastrophe. Our data suggest a prolonged deterioration of oceanic environments during the Late Permian mass extinction. PMID:21343928

  11. The Anoxic Corrosion of Copper in Pure Water and Chloride Rich Brines

    NASA Astrophysics Data System (ADS)

    Ilic, Emilija

    The Nuclear Waste Management Organization (NWMO) is developing an approach for the permanent geological disposal of nuclear waste. The waste will be encased in copper coated used fuel containers (UFCs) and placed in a deep geological repository (DGR). To support the NWMO in their investigations on the long-term corrosion of copper a lab scale simulation of the DGR environment was created. Copper wires were placed in glass electrochemical cells and exposed to one of two environments; pure anoxic water or chloride-rich anoxic brine. The systems were allowed to freely corrode and accumulate hydrogen within their headspaces over extended durations at 30 to 75 °C. The hydrogen was periodically purged and subsequently analyzed using a highly sensitive amperometric sensor; these measurements were utilized to calculate the corresponding copper corrosion rates. Corrosion with hydrogen evolution was demonstrated in both pure water and brines at slow rates below 1 and 10 nm/year, respectively.

  12. Geochemical evidence for anoxic deep water in the Arabian Sea during the last glaciation

    SciTech Connect

    Sarkar, A.; Bhattacharya, S.K.; Sarin, M.M. )

    1993-03-01

    Various paleoceanographic studies have indicated that the deep ocean was probably depleted in dissolved oxygen during the last glacial period ([approximately]18 kyr B.P.; [delta][sup 18]O, stage 2) compared to present time. However, direct evidence of low oxygen content in the deep waters has been lacking. Here, the authors report geochemical evidence of near anoxic conditions in the deep Arabian Sea during the entire last glacial cycle ([delta][sup 18]O; stages 2, 3, and 4). Anoxia is inferred from the concomitant enrichment of organic carbon and authigenic uranium in the glacial sections of a core from the deep eastern Arabian Sea. The anoxic conditions during the last glacial period, probably caused by a change in deep water circulation, evidently enhanced preservation of organic matter and simultaneous removal of uranium from seawater. 57 refs., 3 figs., 2 tabs.

  13. Calcium isotope evidence for dramatic increase of continental weathering during the Toarcian oceanic anoxic event (Early Jurassic)

    NASA Astrophysics Data System (ADS)

    Brazier, Jean-Michel; Suan, Guillaume; Tacail, Théo; Simon, Laurent; Martin, Jeremy E.; Mattioli, Emanuela; Balter, Vincent

    2015-02-01

    The early Toarcian was punctuated by pulses of massive carbon injection that are thought to have triggered, through increased greenhouse conditions, elevated continental discharge and nutrient input, marine anoxia, seawater acidification and species extinctions. Nevertheless, the mode and tempo of changes in continental weathering across this interval remains highly debated, leading to considerable uncertainty about the main causes of these perturbations. In this study we present calcium isotope measurements (δ44/40Ca) of well-preserved brachiopods and bulk rock samples from the hemipelagic strata of Pliensbachian-Toarcian age of Peniche in Portugal in order to constrain changes in the calcium cycle and hence changes in continental weathering during the early Toarcian. The data reveal a similar trend as carbon isotope data from the same section and show negative excursions of about 0.5‰ at the Pliensbachian-Toarcian transition (Pl-To) and at the base of the Toarcian Oceanic Anoxic Event (T-OAE) interval. The comparison of δ44/40Ca ratios recorded in brachiopods and bulk rock corrected for variable dolomite contribution indicates that these excursions reflect changes in the global isotopic composition of seawater rather than changes in the dominant mineralogy of calcifying organisms or in hydrological budget of the considered basin. Box modeling results suggest that the Pl-To and T-OAE δ44/40Ca excursions can be explained by a transient 90% decrease of carbonate accumulation due to seawater acidification followed by a 500% increase in continental weathering rates. The sharp increases in continental weathering inferred from the δ44/40Ca ratios seem overall consistent with lower Toarcian sedimentological and biotic records that document rapid crises in carbonate production followed by episodes of increased calcium carbonate burial. Nevertheless, the maximum of carbonate burial recorded by most NW European basinal successions occurs several hundreds of kyrs after

  14. Open questions on the origin of life at anoxic geothermal fields.

    PubMed

    Mulkidjanian, Armen Y; Bychkov, Andrew Yu; Dibrova, Daria V; Galperin, Michael Y; Koonin, Eugene V

    2012-10-01

    We have recently reconstructed the 'hatcheries' of the first cells by combining geochemical analysis with phylogenomic scrutiny of the inorganic ion requirements of universal components of modern cells (Mulkidjanian et al. Proc Natl Acad Sci U S A 109:E821-830, 2012). These ubiquitous, and by inference primordial, proteins and functional systems show affinity to and functional requirement for K⁺, Zn²⁺, Mn²⁺, and phosphate. Thus, protocells must have evolved in habitats with a high K⁺/Na⁺ ratio and relatively high concentrations of Zn, Mn and phosphorous compounds. Geochemical reconstruction shows that the ionic composition conducive to the origin of cells could not have existed in marine settings but is compatible with emissions of vapor-dominated zones of inland geothermal systems. Under an anoxic, CO₂-dominated atmosphere, the ionic composition of pools of cool, condensed vapor at anoxic geothermal fields would resemble the internal milieu of modern cells. Such pools would be lined with porous silicate minerals mixed with metal sulfides and enriched in K⁺ ions and phosphorous compounds. Here we address some questions that have appeared in print after the publication of our anoxic geothermal field scenario. We argue that anoxic geothermal fields, which were identified as likely cradles of life by using a top-down approach and phylogenomics analysis, could provide geochemical conditions similar to those which were suggested as most conducive for the emergence of life by the chemists who pursuit the complementary bottom-up strategy. PMID:23132762

  15. Preparation and Characterization of Uranium Oxides in Support of the K Basin Sludge Treatment Project

    SciTech Connect

    Sinkov, Sergey I.; Delegard, Calvin H.; Schmidt, Andrew J.

    2008-07-08

    Uraninite (UO2) and metaschoepite (UO3·2H2O) are the uranium phases most frequently observed in K Basin sludge. Uraninite arises from the oxidation of uranium metal by anoxic water and metaschoepite arises from oxidation of uraninite by atmospheric or radiolytic oxygen. Studies of the oxidation of uraninite by oxygen to form metaschoepite were performed at 21°C and 50°C. A uranium oxide oxidation state characterization method based on spectrophotometry of the solution formed by dissolving aqueous slurries in phosphoric acid was developed to follow the extent of reaction. This method may be applied to determine uranium oxide oxidation state distribution in K Basin sludge. The uraninite produced by anoxic corrosion of uranium metal has exceedingly fine particle size (6 nm diameter), forms agglomerates, and has the formula UO2.004±0.007; i.e., is practically stoichiometric UO2. The metaschoepite particles are flatter and wider when prepared at 21°C than the particles prepared at 50°C. These particles are much smaller than the metaschoepite observed in prolonged exposure of actual K Basin sludge to warm moist oxidizing conditions. The uraninite produced by anoxic uranium metal corrosion and the metaschoepite produced by reaction of uraninite aqueous slurries with oxygen may be used in engineering and process development testing. A rapid alternative method to determine uranium metal concentrations in sludge also was identified.

  16. QSARS FOR PREDICTING BIOTIC AND ABIOTIC REDUCTIVE TRANSFORMATION RATE CONSTANTS OF HALOGENATED HYDROCARBONS IN ANOXIC SEDIMENT SYSTEMS

    EPA Science Inventory

    Quantitative structure-activity relationships (QSARs) are developed relating biotic and abiotic pseudo-first-order disappearance rate constants of halogenated hydrocarbons in anoxic sediments to a number of readily available molecular descriptors. ased upon knowledge of the under...

  17. Occurrence, distribution, and transport of pesticides, trace elements, and selected inorganic constituents into the Salton Sea Basin, California, 2001-2002

    USGS Publications Warehouse

    LeBlanc, Lawrence A.; Schroeder, Roy A.; Orlando, James L.; Kuivila, Kathyrn M.

    2004-01-01

    A study of pesticide distribution and transport within the Salton Sea Basin, California, was conducted from September 2001 to October 2002. Sampling for the study was done along transects for the three major rivers that flow into the Salton Sea Basin: the New and Alamo Rivers at the southern end of the basin and the Whitewater River at the northern end. Three stations were established on each river: an outlet station approximately 1 mile upstream of the river discharge, a near-shore station in the river delta, and off-shore station in the Salton Sea. Water and suspended and bed sediments were collected at each station in October 2001, March-April 2002, and September 2002, coinciding with peak pesticide applications in the fall and spring. Fourteen current-use pesticides were detected in the water column. Concentrations of dissolved pesticides typically decreased from the outlets to the sea in all three rivers, consistent with the off-shore transport of pesticides from the rivers to the sea. Dissolved concentrations ranged from the limits of detection to 151 nanograms per liter (ng/L); however, diazinon, eptam (EPTC), and malathion were detected at much higher concentrations (940?3,830 ng/L) at the New and Alamo River outlet and near-shore stations. Concentrations of carbaryl, dacthal, diazinon, and eptam were higher during the two fall sampling periods, whereas concentrations of atrazine, carbofuran, and trifluralin were higher during the spring. Current-use pesticides also were detected on suspended and bed sediments in concentrations ranging from method detection limits to 106 ng/g (nanograms per gram). Chlorpyrifos, dacthal, eptam, trifluralin, and DDE were the most frequently detected pesticides on sediments from all three rivers. The number and concentrations of pesticides associated with suspended sediments frequently were similar for the river outlet and near-shore sites, consistent with the downstream transport of sediment-associated pesticides out of the

  18. Mechanisms for maintaining extracellular glutamate levels in the anoxic turtle striatum.

    PubMed

    Milton, Sarah L; Thompson, John W; Lutz, Peter L

    2002-05-01

    The turtle Trachemys scripta is one of a limited group of vertebrates that can withstand hours to days without oxygen. One facet of anoxic survival is the turtle's ability to maintain basal extracellular glutamate levels, whereas in most vertebrates, anoxia triggers massive excitotoxic glutamate release. We investigated glutamate release and reuptake in the anoxic turtle and the effects of adenosine and ATP-sensitive potassium (K(ATP)) channels on glutamate homeostasis. Striatal extracellular glutamate was measured in anesthetized T. scripta by microdialysis in normoxia and over 2-h anoxia. Glutamate release is decreased by 44% in the early anoxic turtle; this anoxia-induced decrease in glutamate release was prevented when K(ATP) channels and adenosine receptors were blocked simultaneously but not when either mechanism was blocked individually. We hypothesize that the continued release and reuptake of glutamate during anoxia help maintain neuronal tone and aid in the recovery of a functional neuronal network after long periods of anoxia, whereas activation of adenosine and/or K(ATP) conserves energy by reducing glutamate release and lowering transport costs. PMID:11959671

  19. Small sewage treatment system with an anaerobic-anoxic-aerobic combined biofilter.

    PubMed

    Park, S M; Jun, H B; Hong, S P; Kwon, J C

    2003-01-01

    The objective of this study was to investigate a small sewage treatment system that could improve nitrogen and BOD5 removal efficiency as well as generate less solid using an anaerobic-anoxic-aerobic biofiltration system. Wastewater temperature was in the range of 14-25 degrees C, and hydraulic residual times were 12 h for each reactor. The upflow anaerobic digester equipped with anoxic filter was fed with both raw sewage and recycled effluent from the aerobic filter to induce denitrification and solid reduction simultaneously. In the subsequent aerobic filter, residual organic carbon and ammonia might be oxidized and finally nitrate formed. In the anaerobic reactor, about 71% of influent TCOD was removed by sedimentation of the un-filterable COD at the recycle ratio of 300%. Another 20% of influent TCOD was removed in the anoxic filter by denitrification of the recycled nitrate. After 100 days operation, solid reduction and nitrification efficiency were about 30% and 95%, respectively. Overall removal efficiencies of COD and total nitrogen (T-N) were above 94% and 70% at the recycle ratio of 300%, respectively. Total wasted solid from the system after 100 days operation was about 316 g, which was only 44% of the solid generated from a controlled activated sludge system operated at sludge retention time of 8 days. PMID:14753539

  20. Protistan grazing in a meromictic freshwater lake with anoxic bottom water.

    PubMed

    Oikonomou, Andreas; Pachiadaki, Maria; Stoeck, Thorsten

    2014-03-01

    Phagotrophic protists are an important mortality factor of prokaryotes in most aquatic habitats. However, no study has assessed protistan grazing as loss factor of bacterial biomass across the stratification gradient of a temperate freshwater meromictic lake. Protistan grazing effect was quantified in the mixolimnion, the transition zone, and the sulfidic anoxic monimolimnion of Lake Alatsee (Germany). Grazing experiments were performed using prey analogues from the natural prokaryotic assemblage. Daily grazing effect declined from the mixolimnion to the monimolimnion. Heterotrophic flagellates were phagotrophically active in all three water horizons and the main grazers in the monimolimnion. Pigmented flagellates accounted for 70% of total grazing in the mixolimnion and ciliates only for a small fraction of grazing in each depth. Prokaryotic biomass removal peaked in the interface, but protistan impact on the respective prokaryotic abundance was low. Grazing in the anoxic monimolimnion was negligible, with prokaryotic turnover rate being only 0.4% of standing stock. Our results support the assumption that protistan predation in anoxic waters is lower than in oxygenated ones and identify the interface as a microhabitat that supports high grazer biomass, pinpointing the importance of purple sulfur bacteria as carbon source for the upper mixolimnion and the bottom monimolimnion. PMID:24256471

  1. Mercury reduction and complexation by natural organic matter in anoxic environments

    PubMed Central

    Gu, Baohua; Bian, Yongrong; Miller, Carrie L.; Dong, Wenming; Jiang, Xin; Liang, Liyuan

    2011-01-01

    Mercuric Hg(II) species form complexes with natural dissolved organic matter (DOM) such as humic acid (HA), and this binding is known to affect the chemical and biological transformation and cycling of mercury in aquatic environments. Dissolved elemental mercury, Hg(0), is also widely observed in sediments and water. However, reactions between Hg(0) and DOM have rarely been studied in anoxic environments. Here, under anoxic dark conditions we show strong interactions between reduced HA and Hg(0) through thiolate ligand-induced oxidative complexation with an estimated binding capacity of ~3.5 μmol Hg/g HA and a partitioning coefficient >106 mL/g. We further demonstrate that Hg(II) can be effectively reduced to Hg(0) in the presence of as little as 0.2 mg/L reduced HA, whereas production of Hg(0) is inhibited by complexation as HA concentration increases. This dual role played by DOM in the reduction and complexation of mercury is likely widespread in anoxic sediments and water and can be expected to significantly influence the mercury species transformations and biological uptake that leads to the formation of toxic methylmercury. PMID:21220311

  2. Humic substances as fully regenerable electron acceptors in recurrently anoxic environments

    NASA Astrophysics Data System (ADS)

    Klüpfel, Laura; Piepenbrock, Annette; Kappler, Andreas; Sander, Michael

    2014-03-01

    Humic substances form through the degradation of microbial and plant precursors, and make up a significant fraction of natural organic matter in terrestrial and aquatic environments. Humic substances are redox-active and can act as terminal electron acceptors in anaerobic microbial respiration. Reduced humic substances may become re-oxidized during aeration of temporarily anoxic systems, such as wetlands, sediments and many soils. If the transfer of electrons from anaerobic respiration through humic substances to oxygen is sustained over many redox cycles, it may competitively suppress electron transfer to carbon dioxide, and thereby lower the formation of methane in temporarily anoxic systems. Here, we monitor changes in the redox states of four chemically distinct dissolved humic substances over successive cycles of reduction by the bacterium Shewanella oneidensis MR-1 and oxidation by oxygen, in a series of laboratory experiments. We show that electron transfer to and from these substances is fully reversible and sustainable over successive redox cycles. We suggest that redox cycling of humic substances may largely suppress methane production in temporarily anoxic systems.

  3. Potential of nitrous oxide recovery from an aerobic/oxic/anoxic SBR process.

    PubMed

    Zhao, Jianqiang; Huang, Nan; Hu, Bo; Jia, Luwei; Ge, Guanghuan

    2016-01-01

    A single sequencing batch reactor (SBR) with an operating mode of anaerobic/oxic/anoxic (A/O/A) was developed to determine a simpler process to recover nitrous oxide (N2O) from synthetic wastewater containing ammonia and glucose. This SBR system was initiated in A/O mode to implement nitritation (ammonia to nitrite) and then switched to A/O/A mode. Using measurements of the dissolved N2O concentration and release rate, the total production and conversion rate of N2O were calculated to reveal the potential of producing and recovering N2O in the extended anoxic phase. Results showed that the A/O/A SBR could convert the majority of the nitrite available in the system into N2O by heterotrophic denitritation over longer anoxic periods, and a conversion rate of 77% could be achieved. As a consequence, the A/O/A SBR presents potential ability to produce and recover N2O from wastewater containing ammonia and organic carbon. PMID:26942527

  4. Biological nutrient removal in a sequencing batch reactor operated as oxic/anoxic/extended-idle regime.

    PubMed

    Li, Xiao-ming; Chen, Hong-bo; Yang, Qi; Wang, Dong-bo; Luo, Kun; Zeng, Guang-ming

    2014-06-01

    Previous researches have demonstrated that biological phosphorus removal from wastewater could be induced by oxic/extended-idle (O/EI) regime. In this study, an anoxic period was introduced after the aeration to realize biological nutrient removal. High nitrite accumulation ratio and polyhydroxyalkanoates biosynthesis were obtained in the aeration and biological nutrient removal could be well achieved in oxic/anoxic/extended-idle (O/A/EI) regime for the wastewater used. In addition, nitrogen and phosphorus removal performance in O/A/EI regime was compared with that in conventional anaerobic/anoxic/aerobic (A(2)/O) and O/EI processes. The results showed that O/A/EI regime exhibited higher nitrogen and phosphorus removal than A(2)/O and O/EI processes. More ammonium oxidizing bacteria and polyphosphate accumulating organisms and less glycogen accumulating organisms containing in the biomass might be the principal reason for the better nitrogen and phosphorus removal in O/A/EI regime. Furthermore, biological nutrient removal with O/A/EI regime was demonstrated with municipal wastewater. The average TN, SOP and COD removal efficiencies were 93%, 95% and 87%, respectively. PMID:24393562

  5. The Role of Cell Volume in the Dynamics of Seizure, Spreading Depression, and Anoxic Depolarization.

    PubMed

    Ullah, Ghanim; Wei, Yina; Dahlem, Markus A; Wechselberger, Martin; Schiff, Steven J

    2015-08-01

    Cell volume changes are ubiquitous in normal and pathological activity of the brain. Nevertheless, we know little of how cell volume affects neuronal dynamics. We here performed the first detailed study of the effects of cell volume on neuronal dynamics. By incorporating cell swelling together with dynamic ion concentrations and oxygen supply into Hodgkin-Huxley type spiking dynamics, we demonstrate the spontaneous transition between epileptic seizure and spreading depression states as the cell swells and contracts in response to changes in osmotic pressure. Our use of volume as an order parameter further revealed a dynamical definition for the experimentally described physiological ceiling that separates seizure from spreading depression, as well as predicted a second ceiling that demarcates spreading depression from anoxic depolarization. Our model highlights the neuroprotective role of glial K buffering against seizures and spreading depression, and provides novel insights into anoxic depolarization and the relevant cell swelling during ischemia. We argue that the dynamics of seizures, spreading depression, and anoxic depolarization lie along a continuum of the repertoire of the neuron membrane that can be understood only when the dynamic ion concentrations, oxygen homeostasis,and cell swelling in response to osmotic pressure are taken into consideration. Our results demonstrate the feasibility of a unified framework for a wide range of neuronal behaviors that may be of substantial importance in the understanding of and potentially developing universal intervention strategies for these pathological states. PMID:26273829

  6. The Role of Cell Volume in the Dynamics of Seizure, Spreading Depression, and Anoxic Depolarization

    PubMed Central

    Ullah, Ghanim; Wei, Yina; Dahlem, Markus A; Wechselberger, Martin; Schiff, Steven J

    2015-01-01

    Cell volume changes are ubiquitous in normal and pathological activity of the brain. Nevertheless, we know little of how cell volume affects neuronal dynamics. We here performed the first detailed study of the effects of cell volume on neuronal dynamics. By incorporating cell swelling together with dynamic ion concentrations and oxygen supply into Hodgkin-Huxley type spiking dynamics, we demonstrate the spontaneous transition between epileptic seizure and spreading depression states as the cell swells and contracts in response to changes in osmotic pressure. Our use of volume as an order parameter further revealed a dynamical definition for the experimentally described physiological ceiling that separates seizure from spreading depression, as well as predicted a second ceiling that demarcates spreading depression from anoxic depolarization. Our model highlights the neuroprotective role of glial K buffering against seizures and spreading depression, and provides novel insights into anoxic depolarization and the relevant cell swelling during ischemia. We argue that the dynamics of seizures, spreading depression, and anoxic depolarization lie along a continuum of the repertoire of the neuron membrane that can be understood only when the dynamic ion concentrations, oxygen homeostasis,and cell swelling in response to osmotic pressure are taken into consideration. Our results demonstrate the feasibility of a unified framework for a wide range of neuronal behaviors that may be of substantial importance in the understanding of and potentially developing universal intervention strategies for these pathological states. PMID:26273829

  7. Anoxic Conditions Promote Species-Specific Mutualism between Gut Microbes In Silico

    PubMed Central

    Heinken, Almut

    2015-01-01

    The human gut is inhabited by thousands of microbial species, most of which are still uncharacterized. Gut microbes have adapted to each other's presence as well as to the host and engage in complex cross feeding. Constraint-based modeling has been successfully applied to predicting microbe-microbe interactions, such as commensalism, mutualism, and competition. Here, we apply a constraint-based approach to model pairwise interactions between 11 representative gut microbes. Microbe-microbe interactions were computationally modeled in conjunction with human small intestinal enterocytes, and the microbe pairs were subjected to three diets with various levels of carbohydrate, fat, and protein in normoxic or anoxic environments. Each microbe engaged in species-specific commensal, parasitic, mutualistic, or competitive interactions. For instance, Streptococcus thermophilus efficiently outcompeted microbes with which it was paired, in agreement with the domination of streptococci in the small intestinal microbiota. Under anoxic conditions, the probiotic organism Lactobacillus plantarum displayed mutualistic behavior toward six other species, which, surprisingly, were almost entirely abolished under normoxic conditions. This finding suggests that the anoxic conditions in the large intestine drive mutualistic cross feeding, leading to the evolvement of an ecosystem more complex than that of the small intestinal microbiota. Moreover, we predict that the presence of the small intestinal enterocyte induces competition over host-derived nutrients. The presented framework can readily be expanded to a larger gut microbial community. This modeling approach will be of great value for subsequent studies aiming to predict conditions favoring desirable microbes or suppressing pathogens. PMID:25841013

  8. Using Biogenic Sulfur Gases as Remotely Detectable Biosignatures on Anoxic Planets

    PubMed Central

    Meadows, Victoria S.; Claire, Mark W.; Kasting, James F.

    2011-01-01

    Abstract We used one-dimensional photochemical and radiative transfer models to study the potential of organic sulfur compounds (CS2, OCS, CH3SH, CH3SCH3, and CH3S2CH3) to act as remotely detectable biosignatures in anoxic exoplanetary atmospheres. Concentrations of organic sulfur gases were predicted for various biogenic sulfur fluxes into anoxic atmospheres and were found to increase with decreasing UV fluxes. Dimethyl sulfide (CH3SCH3, or DMS) and dimethyl disulfide (CH3S2CH3, or DMDS) concentrations could increase to remotely detectable levels, but only in cases of extremely low UV fluxes, which may occur in the habitable zone of an inactive M dwarf. The most detectable feature of organic sulfur gases is an indirect one that results from an increase in ethane (C2H6) over that which would be predicted based on the planet's methane (CH4) concentration. Thus, a characterization mission could detect these organic sulfur gases—and therefore the life that produces them—if it could sufficiently quantify the ethane and methane in the exoplanet's atmosphere. Key Words: Exoplanets—Biosignatures—Anoxic atmospheres—Planetary atmospheres—Remote life detection—Photochemistry. Astrobiology 11, 419–441. PMID:21663401

  9. Mobilization of trace metals and inorganic compounds during resuspension of anoxic sediments from Trepangier Bayou, Louisiana.

    PubMed

    Shipley, Heather J; Gao, Yan; Kan, Amy T; Tomson, Mason B

    2011-01-01

    The release of trace metals (Mn, Ni, Co, Cu, Zn, Pb, and Cd) and inorganic compounds (As) from initially anoxic Trepangier Bayou sediments, Louisiana and the sources of the released metals were investigated. After 1 to 2 d aeration, significant amounts of trace metals (Mn, Zn, Cd, Ni, and Co) were released to the aqueous phase with increased acidity, primarily due to the oxidation of acid-volatile sulfide and ferrous iron and iron sulfide minerals. The addition of a bacterial inhibitor, NaN,, to the Trepangier sediment during resuspension inhibited metal release, suggesting that microbial catalysis can regulate metal mobilization during sediment resuspension. In a well buffered system, oxidation of iron sulfides alone did not appear to induce trace metal release. Moreover, when Trepangier sediment was resuspended in anoxic conditions at neutral pH, <1% of the trace metal content was released, whereas a significant release of metal was observed under acidic anoxic conditions. Although oxidation of iron sulfide minerals is an essential prerequisite for the release of Zn, Co, Cd, and Ni, carbonates and oxides also play a role. The trace metals and inorganic compounds investigated could be classified into three groups according to their release characteristics: (i) Mn, Zn, Cd, Ni, and Co; (ii) Fe, Pb, and As; and (iii) Cu. The groupings appeared to depend on the sources of compounds and their relative affinity, after oxidation, to iron oxyhydroxides or organic matter. PMID:21520756

  10. Effects of Human Alterations on Global River Basins and their Associated Coastal Zones: focus on River-dominated Ocean Margins (RiOMars)

    NASA Astrophysics Data System (ADS)

    Dürr, H. H.; Van Cappellen, P.; Meybeck, M.; Laruelle, G. G.; Mayorga, E.; Hartmann, J.; Maavara, T.; Bouwman, L.; Seitzinger, S.

    2013-12-01

    Coastal systems connected to large rivers, mostly major delta systems or river-dominated ocean margins (RiOMars), make up <1% of the worldwide shoreline. Yet, they comprise 28% of the exorheic terrestrial river basins area, and host 26.4% of the population connected via rivers to coastal systems (Dürr et al. 2011). These systems receive 41.6% of the discharge delivered to oceans. 25.7% of the suspended sediment load is processed, with comparable amounts for the total nitrogen (N) and phosphorus (P) loads. The filter function for incoming riverine nutrients (N, P, C, Si) in these coastal environments is very different from other near-shore environments such as macro-tidal estuaries, lagoons or fjords. In this type, the major biogeochemical transformation of incoming river fluxes takes place in a plume on the continental margins (RiOMars). This effect is even more pronounced at high flow stages when the highest volumes of water and material are delivered. The filtering efficiency of delta systems is highest during low flows, and some of the systems may be influenced by tides when ebb and flood might flow through different channels, creating a braided network of streams and many islands (Dürr et al. 2011). Here, we discuss controls on the different nutrient forms delivered to different coastal environments, and how they are assessed (Global-NEWS and other approaches), with a special focus on large deltas and RiOMars. Drivers and impacts of global change will be explored through the Millenium Assessment Scenarios and how the fluxes to these different coastal systems might change. An increasing role is also played by aquaculture in different coastal types as a non-insignificant source of nutrients. World-wide distribution of coastal types and their related river basins (Dürr et al. 2011). Characteristics of types of near-shore coastal areas and their associated river basins Greenland and Antarctica excepted. Data from Dürr et al. (2011) and the Global-NEWS program

  11. Distribution and chemistry of manganese, iron, and suspended particulates in Orca Basin

    NASA Astrophysics Data System (ADS)

    Trefry, John H.; Presley, Bob J.; Keeney-Kennicutt, Wendy L.; Trocine, Robert P.

    1984-06-01

    The intense halocline and redoxcline in the Orca Basin, northwest Gulf of Mexico, induce dramatic water column profiles for manganese, iron, and suspended particulates. Within a 17 m interval, the salinity of the basin water increases from 66 to ≈260 & permil and dissolved oxygen decreases to zero. Midway through this transition zone, concentrations of suspended matter peak at ≈900 μg/liter. Dissolved iron and manganese concentrations in the anoxic brine increase from oceanic values to maxima of 1.6 and 22 mg/liter, respectively. Upward migration of dissolved manganese from the brine leads to production of manganese-rich particles in the slightly oxygenated overlying water.

  12. Oxic and anoxic mineralization of simple carbon substrates in peat at low temperatures

    NASA Astrophysics Data System (ADS)

    Segura, Javier; Sparrman, Tobias; Nilsson, Mats; Schleucher, Jürgen; Öquist, Mats

    2016-04-01

    Northern peatlands store approximately one-quarter of the world's soil carbon and typically act as net carbon sinks. However a large fraction of the carbon fixed during the growing season can be emitted back to the atmosphere during winter as CO2 and CH4, despite low temperatures and frozen conditions, making low temperature biogeochemical processes crucial for the long-term net ecosystem carbon balance. However, the metabolic processes driving carbon mineralization under winter conditions are poorly understood and whether or not peat microbial communities can maintain metabolic activity at temperatures below freezing is uncertain. Here we present results from an incubation study aimed at elucidating the potential of peat microbial communities to mineralize simple carbon substrates to CO2 and CH4 at low temperatures. Peat samples from the acrotelm were amended with [13C]- glucose and incubated at -5 °C, -3 °C, +4 °C, and +9 °C under both oxic and anoxic conditions, and rates of CO2 and CH4 production were determined. In addition, incorporation of the labelled substrate into phospholipid fatty acids (PLFAs) were determined to account for microbial growth during mineralization and the metabolic partitioning between catabolic and anabolic activity. Biogenic [13C]-CO2 was produced from the added substrate in peat samples incubated both under oxic and anoxic conditions. Under oxic conditions the production rates were 3.5, 2.3, 0.3 and 0.07 mg CO2 g SOM‑1day‑1 at +9 °C, +4 °C, -3 °C and -5 °C, respectively, and corresponding rates for anoxic conditions were 1.1, 1.0, 0.03 and 0.01 mg CO2 g SOM‑1day‑1. Consequently the observed Q10 values of the temperature sensitivity under both oxic and anoxic conditions increased dramatically upon soil freezing. However, anoxic mineralization appears less sensitive to temperature as compared to when oxygen is present. Methane was also produced and detected across the range of the incubation temperatures in the anoxic

  13. Regional facies distribution and cycle development of Upper Mississippian ramp carbonates, Appalachian Basin

    SciTech Connect

    Al-Tawil, A.A.; Read, J.F. . Dept. of Geological Sciences)

    1994-03-01

    Upper Mississippian Greenbrier carbonates in the Appalachian Basin are a wedge shaped unit 0 to 600 m thick that formed on a southward facing ramp (> 200 km wide). Four depositional sequences (about 2 m.y. average duration) can be recognized with component cycles of 100--400 k.y. average duration. Up-dip in Kentucky the roughly equivalent Newman/Slade Formations (20--60 m thick) are dominated by several grainstone cycles that shallow upward into lagoonal facies and/or exposure surfaces, where major caliche horizons coincide with sequence boundaries. In outcrops in West Virginia, the Greenbrier Group is a mid-ramp facies (100--500 m thick). Caliches are absent and the interval appears internally conformable. Red beds commonly define the LST of four depositional sequences. Inner mid-ramp cycles are dominated by transgressive eolianite grainstone facies, oolite shoals, and near-shore deposits, but tidal flat facies are rare. Cyclicity is best developed on the outer mid-ramp (up to 50 cycles developed); cycles are dominated by subtidal grainstone shallowing up into lagoonal and locally thick (up to 8 m units) tidal flat facies, or erosional surfaces. In southwestern Virginia, ramp-slope to basin facies are dominated by non-cyclic deep-marine, dark skeletal wackestone and shaley lime-mudstone facies with beds of deep-marine lime sand (perhaps coincident with low stands). The distribution of facies on the ramp is compatible with moderate amplitude Milankovitch high-frequency sea-level oscillations superimposed on several 3rd order fluctuations of relative sea-level.

  14. Devonian Winnipegosis reefs of Manitoba outcrop belt - possible basin model

    SciTech Connect

    McCabe, H.R.

    1988-07-01

    Devonian Winnipegosis reefs crop out intermittently along a 350-km belt in southwestern Manitoba and represent an almost complete facies sequence ranging from central-basin reefs in the northwest to shelf-edge reefs in the southeast. In addition, structural complexities of the overlying Devonian strata mirror precisely the configuration of the underlying reefs. These outcrop data, supplemented by closely spaced stratigraphic core holes that have been sited specifically with respect to reef-controlled structures, permit development of a tentative reef model. Reef parameters are (a) size, from less than 0.5 km to a maximum of about 12 km; (b) shape, small pinnacle-type features to broad, irregular, flat-topped, atoll-like complexes, all with relatively steep margins (5/degrees/-20/degrees/); and (c) height, uniform in any given area, ranging from 40-50 m at shelf edge to 65-90 m in central basin areas. Internal reef structure shows flat central beds, and flank dips ranging from 20/degrees/ to 45/degrees/ or more in the most basinward reefs. Locally, reefs are abundantly fossiliferous, but organic framework is difficult to identify. Black bituminous mudstones in the interreef and reef-flank areas, with or without reef-derived carbonate detritus, are the only time-stratigraphic equivalents of the reefs. (The Ratner-type bituminous carbonate laminites appear to entirely postdate reef development.) Configuration of the steep-sided reefs and the well-defined shelf edge may have been controlled not only by organic (biohermal.) development, but also by anoxic containment resulting from restriction of lateral growth by anoxic bottom waters. Pinnacle reefs could thus have developed, in part, as anoxically contained pinnacle mounds rather than true bioherms.

  15. An anoxic, Fe(II)-rich, U-poor ocean 3.46 billion years ago

    NASA Astrophysics Data System (ADS)

    Li, Weiqiang; Czaja, Andrew D.; Van Kranendonk, Martin J.; Beard, Brian L.; Roden, Eric E.; Johnson, Clark M.

    2013-11-01

    The oxidation state of the atmosphere and oceans on the early Earth remains controversial. Although it is accepted by many workers that the Archean atmosphere and ocean were anoxic, hematite in the 3.46 billion-year-old (Ga) Marble Bar Chert (MBC) from Pilbara Craton, NW Australia has figured prominently in arguments that the Paleoarchean atmosphere and ocean was fully oxygenated. In this study, we report the Fe isotope compositions and U concentrations of the MBC, and show that the samples have extreme heavy Fe isotope enrichment, where δ56Fe values range between +1.5‰ and +2.6‰, the highest δ56Fe values for bulk samples yet reported. The high δ56Fe values of the MBC require very low levels of oxidation and, in addition, point to a Paleoarchean ocean that had high aqueous Fe(II) contents. A dispersion/reaction model indicates that O2 contents in the photic zone of the ocean were less than 10-3 μM, which suggests that the ocean was essentially anoxic. An independent test of anoxic conditions is provided by U-Th-Pb isotope systematics, which show that U contents in the Paleoarchean ocean were likely below 0.02 ppb, two orders-of-magnitude lower than the modern ocean. Collectively, the Fe and U data indicate a reduced, Fe(II)-rich, U-poor environment in the Archean oceans at 3.46 billion years ago. Given the evidence for photosynthetic communities provided by broadly coeval stromatolites, these results suggests that an important photosynthetic pathway in the Paleoarchean oceans may have been anoxygenic photosynthetic Fe(II) oxidation.

  16. [Construction and evaluation of an engineered bacterial strain for producing lipopeptide under anoxic conditions].

    PubMed

    Liang, Xiao-long; Zhao, Feng; Shi, Rong-jiu; Ban, Yun-he; Zhou, Ji-dong; Han, Si-qin; Zhang, Ying

    2015-08-01

    Biosurfactant-facilitated oil recovery is one of the most important aspects of microbial enhanced oil recovery (MEOR). However, the biosurfactant production by biosurfactant-producing microorganisms, most of which are aerobes, is severely suppressed due to the in-situ anoxic conditions within oil reservoirs. In this research, we successfully engineered a strain JD-3, which could grow rapidly and produce lipopeptide under anoxic conditions, by protoplast confusion using a Bacillus amyloliquefaciens strain BQ-2 which produces biosurfactant aerobically, and a facultative anaerobic Pseudomonas stutzeri strain DQ-1 as parent strains. The alignment of 16S rDNA sequence (99% similarity) and comparisons of cell colony morphology showed that fusant JD-3 was closer to the parental strain B. amyloliquefaciens BQ-2. The surface tension of culture broth of fusant JD-3, after 36-hour cultivation under anaerobic conditions, decreased from initially 63.0 to 32.5 mN · m(-1). The results of thin layer chromatography and infrared spectrum analysis demonstrated that the biosurfactant produced by JD-3 was lipopeptide. The surface-active lipopeptide had a low critical micelle concentration (CMC) of 90 mg · L(-1) and presented a good ability to emulsify various hydrocarbons such as crude oil, liquid paraffin, and kerosene. Strain JD-3 could utilize peptone as nitrogen source and sucrose, glucose, glycerin or other common organics as carbon sources for anaerobic lipopeptide synthesis. The subculture of fusant JD-3 showed a stable lipopeptide-producing ability even after ten serial passages. All these results indicated that fusant JD-3 holds a great potential to microbially enhance oil recovery under anoxic conditions. PMID:26685621

  17. A global perturbation to the sulfur cycle during the Toarcian Oceanic Anoxic Event

    NASA Astrophysics Data System (ADS)

    Gill, Benjamin C.; Lyons, Timothy W.; Jenkyns, Hugh C.

    2011-12-01

    The Mesozoic Era was punctuated by intervals of widespread anoxia within the ocean, termed oceanic anoxic events or OAEs. The chemostratigraphy of these intervals also contains evidence of transient perturbations to many biogeochemically important elemental cycles. Here we present high-resolution sulfur isotope data from three stratigraphic sections spanning the Toarcian Oceanic Anoxic Event (T-OAE) of the Early Jurassic. All sections show a similar increase in the sulfur isotope ratio of sulfate parallel to an overall positive excursion in carbon isotopes during the OAE interval. Based on forward box modeling, the sulfate-S isotope excursion can be generated by transiently increasing the burial rate of pyrite in marine sediments likely deposited under euxinic (i.e., anoxic and sulfidic) conditions in the water column. In addition, modeling shows that prolonged recovery of the δ 34S of seawater sulfate—at least 8 Ma after the initial rise associated with the OAE—was due to the relatively long residence time of sulfate in the Jurassic ocean; estimates from our modeling put the Toarcian marine sulfate concentrations at 4 to 8 mM. The similarity of the sulfur isotope records from the North European epicontinental (or epeiric) sea and Tethyan continental margin suggests that local modification of the marine sulfur isotope signal was minimal: a point explored with isotope mixing models. Importantly, our results indicate that the sulfur isotope excursion reflects a globally significant perturbation in the sulfur cycle and that pyrite burial in the North European Epeiric Seaway alone cannot account for the excursion. This study, along with recent work from other Phanerozoic intervals of widespread marine oxygen deficiency, confirms that the sulfur cycle can be perturbed significantly by enhanced pyrite burial during periods of prolonged oceanic anoxia/euxinia.

  18. Microbial responses to chitin and chitosan in oxic and anoxic agricultural soil slurries

    NASA Astrophysics Data System (ADS)

    Wieczorek, A. S.; Hetz, S. A.; Kolb, S.

    2014-06-01

    Microbial degradation of chitin in soil substantially contributes to carbon cycling in terrestrial ecosystems. Chitin is globally the second most abundant biopolymer after cellulose and can be deacetylated to chitosan or can be hydrolyzed to N,N'-diacetylchitobiose and oligomers of N-acetylglucosamine by aerobic and anaerobic microorganisms. Which pathway of chitin hydrolysis is preferred by soil microbial communities is unknown. Supplementation of chitin stimulated microbial activity under oxic and anoxic conditions in agricultural soil slurries, whereas chitosan had no effect. Thus, the soil microbial community likely was more adapted to chitin as a substrate. In addition, this finding suggested that direct hydrolysis of chitin was preferred to the pathway that starts with deacetylation. Chitin was apparently degraded by aerobic respiration, ammonification, and nitrification to carbon dioxide and nitrate under oxic conditions. When oxygen was absent, fermentation products (acetate, butyrate, propionate, hydrogen, and carbon dioxide) and ammonia were detected, suggesting that butyric and propionic acid fermentation, along with ammonification, were likely responsible for anaerobic chitin degradation. In total, 42 different chiA genotypes were detected of which twenty were novel at an amino acid sequence dissimilarity of less than 50%. Various chiA genotypes responded to chitin supplementation and affiliated with a novel deep-branching bacterial chiA genotype (anoxic conditions), genotypes of Beta- and Gammaproteobacteria (oxic and anoxic conditions), and Planctomycetes (oxic conditions). Thus, this study provides evidence that detected chitinolytic bacteria were catabolically diverse and occupied different ecological niches with regard to oxygen availability enabling chitin degradation under various redox conditions on community level.

  19. Bacterial Adaptation of Respiration from Oxic to Microoxic and Anoxic Conditions: Redox Control

    PubMed Central

    Bueno, Emilio; Mesa, Socorro; Bedmar, Eulogio J.; Richardson, David J.

    2012-01-01

    Abstract Under a shortage of oxygen, bacterial growth can be faced mainly by two ATP-generating mechanisms: (i) by synthesis of specific high-affinity terminal oxidases that allow bacteria to use traces of oxygen or (ii) by utilizing other substrates as final electron acceptors such as nitrate, which can be reduced to dinitrogen gas through denitrification or to ammonium. This bacterial respiratory shift from oxic to microoxic and anoxic conditions requires a regulatory strategy which ensures that cells can sense and respond to changes in oxygen tension and to the availability of other electron acceptors. Bacteria can sense oxygen by direct interaction of this molecule with a membrane protein receptor (e.g., FixL) or by interaction with a cytoplasmic transcriptional factor (e.g., Fnr). A third type of oxygen perception is based on sensing changes in redox state of molecules within the cell. Redox-responsive regulatory systems (e.g., ArcBA, RegBA/PrrBA, RoxSR, RegSR, ActSR, ResDE, and Rex) integrate the response to multiple signals (e.g., ubiquinone, menaquinone, redox active cysteine, electron transport to terminal oxidases, and NAD/NADH) and activate or repress target genes to coordinate the adaptation of bacterial respiration from oxic to anoxic conditions. Here, we provide a compilation of the current knowledge about proteins and regulatory networks involved in the redox control of the respiratory adaptation of different bacterial species to microxic and anoxic environments. Antioxid. Redox Signal. 16, 819–852. PMID:22098259

  20. Anoxic carbon degradation in Arctic sediments: Microbial transformations of complex substrates

    NASA Astrophysics Data System (ADS)

    Arnosti, C.; Finke, N.; Larsen, O.; Ghobrial, S.

    2005-05-01

    Complex substrates are degraded in anoxic sediments by the concerted activities of diverse microbial communities. To explore the effects of substrate complexity on carbon transformations in permanently cold anoxic sediments, four substrates— Spirulina cells, Isochrysis cells, and soluble high molecular weight carbohydrate-rich extracts of these cells (Spir-Ex and Iso-Ex)—were added to sediments collected from Svalbard. The sediments were homogenized, incubated anaerobically in gas-tight bags at 0°C, and enzyme activities, fermentation, and terminal respiration were monitored over a 1134 h time course. All substrate additions yielded a fraction (8%-13%) of carbon that was metabolized to CO 2 over the first 384 h of incubation. The timecourse of VFA (volatile fatty acid) production and consumption, as well as the suite of VFAs produced, was similar for all substrates. After this phase, pathways of carbon degradation diverged, with an additional 43%, 32%, 33%, and 8% of Isochrysis, Iso-Ex, Spirulina, and Spir-Ex carbon respired to CO 2 over the next 750 h of incubation. Somewhat surprisingly, the soluble, carbohydrate-rich extracts did not prove to be more labile substrates than the whole cells from which they were derived. Although Spirulina and Iso-Ex differed in physical and chemical characteristics (solid/soluble, C/N ratio, lipid and carbohydrate content), nearly identical quantities of carbon were respired to CO 2. In contrast, only 15% of Spir-Ex carbon was respired, despite the initial burst of activity that it fueled, its soluble nature, and its relatively high (50%) carbohydrate content. The microbial community in these cold anoxic sediments clearly has the capacity to react rapidly to carbon input; extent and timecourse of remineralization of added carbon is similar to observations made at much higher temperatures in temperate sediments. The extent of carbon remineralization from these specific substrates, however, would not likely have been predicted

  1. Microbial responses to chitin and chitosan in oxic and anoxic agricultural soil slurries

    NASA Astrophysics Data System (ADS)

    Wieczorek, A. S.; Hetz, S. A.; Kolb, S.

    2014-02-01

    Chitin is the second most abundant biopolymer in terrestrial ecosystems and is subject to microbial degradation. Chitin can be deacetylated to chitosan or can be hydrolyzed to N,N'-diacetylchitobiose and oligomers of N-acetylglucosamine by aerobic and anaerobic microorganisms. Which pathway of chitin hydrolysis is preferred by soil microbial communities has previously been unknown. Supplementation of chitin stimulated microbial activity under oxic and anoxic conditions in agricultural soil slurries, whereas chitosan had no effect. Thus, the soil microbial community likely was more adapted to chitin as a substrate. In addition, this finding suggested that direct hydrolysis of chitin was preferred to the pathway that starts with deacetylation. Chitin was apparently degraded by aerobic respiration, ammonification, and nitrification to carbon dioxide and nitrate under oxic conditions. When oxygen was absent, fermentation products (acetate, butyrate, propionate, hydrogen, carbon dioxide) and ammonia were detected, suggesting that butyric and propionic acid fermentation were along with ammonification likely responsible for apparent anaerobic chitin degradation. In total, 42 different chiA genotypes were detected of which twenty were novel at an amino acid sequence dissimilarity of >50%. Various chiA genotypes responded to chitin supplementation and affiliated with a novel deep-branching bacterial chiA genotype (anoxic conditions), genotypes of Beta- and Gammaproteobacteria (oxic and anoxic conditions), and Planctomycetes (oxic conditions). Thus, this study provides evidence that detected chitinolytic bacteria were catabolically diverse and occupied different ecological niches with regard to oxygen availability enabling chitin degradation under various redox conditions at the level of the community.

  2. Simultaneous carbon and nitrogen removal in anoxic-aerobic circulating fluidized bed biological reactor (CFBBR).

    PubMed

    Cui, Y; Nakhla, G; Zhu, J; Patel, A

    2004-06-01

    Biological nutrient removal (BNR) in municipal wastewater treatment to remove carbonaceous substrates and nutrients, has recently become increasingly popular worldwide due to increasingly stringent regulations. Biological fluidized bed (BFB) technology, which could be potentially used for BNR, can provide some advantages such as high efficiency and a compact structure. This work shows the results of simultaneous elimination of organic carbon and nitrogen using a circulating fluidized bed biological reactor (CFBBR, which has been developed recently for chemical engineering processes. The CFBBR has two fluidized beds, running as anoxic and aerobic processes to accomplish simultaneous nitrification and denitrification, with continuous liquid recirculation through the anoxic bed and the aerobic bed. Soluble COD concentrations in the effluent ranging from 4 to 20 mg l(-1) were obtained at varying COD loading rates; ammonia nitrogen removal efficiencies averaged in excess of 99% at a minimum total hydraulic retention time (HRT) of 2.0 hours over a temperature range of 25 degrees C to 28 degrees C. Effluent nitrate nitrogen concentration of less than 5 mg l(-1) was achieved by increasing effluent recycle rate. No nitrite accumulation was observed either in the anoxic bed or in the aerobic bed. The system was able to treat grit chamber effluent wastewater at a HRT of 2.0 hours while achieving average effluent BOD, COD, NH3-N, TKN, nitrates, total phosphate, TSS and VSS concentrations of 10 mg l(-1), 18 mg l(-1), 1.3 mg l(-1), 1.5 mg l(-1), 7 mg l(-1), 2.0 mg l(-1), 10 mg l(-1) and 8 mg l(-1) respectively. The CFBBR appears to be not only an excellent alternative for conventional activated sludge type BNR technologies but also capable of processing much higher loadings that are suitable for industrial applications. PMID:15369290

  3. Cardiac pacing for severe childhood neurally mediated syncope with reflex anoxic seizures

    PubMed Central

    McLeod, K; Wilson, N; Hewitt, J; Norrie, J; Stephenson, J

    1999-01-01

    OBJECTIVE—To determine whether permanent cardiac pacing could prevent syncope and seizures in children with frequent severe neurally mediated syncope, and if so whether dual chamber pacing was superior to single chamber ventricular pacing.
METHODS—Dual chamber pacemakers were implanted into 12 children (eight male, four female) aged 2-14 years (median 2.8 years) with frequent episodes of reflex anoxic seizures and a recorded prolonged asystole during an attack. The pacemaker was programmed to sensing only (ODO), single chamber ventricular pacing with hysteresis (VVI), and dual chamber pacing with rate drop response (DDD) for four month periods, with each patient allocated to one of the six possible sequences of these modes, according to chronological order of pacemaker implantation. The parent and patient were blinded to the pacemaker mode and asked to record all episodes of syncope or presyncope ("near miss" events). The doctor analysing the results was blinded to the patient and pacemaker mode.
RESULTS—One patient was withdrawn from the study after the pacemaker was removed because of infection. In the remaining children, both dual chamber and single chamber pacing significantly reduced the number of syncopal episodes compared with sensing only (p = 0.0078 for both). VVI was as effective as DDD for preventing syncope, but DDD was superior to VVI in reducing near miss events (p = 0.016).
CONCLUSIONS—Permanent pacing is an effective treatment for children with severe neurally mediated syncope and reflex anoxic seizures. VVI is as effective as DDD in preventing syncope and seizures, but DDD is superior in preventing overall symptoms.


Keywords: syncope; reflex anoxic seizures; pacing; paediatric cardiology PMID:10573501

  4. PROGRESSIVE VENTILATION OF THE OCEANS - POTENTIAL FOR RETURN TO ANOXIC CONDITIONS IN THE POST-PALEOZOIC

    SciTech Connect

    Wilde, Pat; Berry, William B.N.

    1980-09-01

    After the ventilation of the residual anoxic layer in the late Paleozoic (Berry and Wilde, 1978) a return to ephemeral anoxic conditions in the ocean is suggested by anoxic sediments found in the Mesozoic cores of the deep-sea drilling program (Schlanger and Jenkyns 1977, and Theide and Van Andel 1977). A preliminary physical oceanographic model is presented to explain the development of oxygen depleted layers in mid-waters below the surface wind-mixed layer during non-glacial climates. The model shows the range of temperature, salinity and density values for hypothetical water masses for two climatically related oceanographic situations: Case A where bottom waters are formed at mid-latitudes at the surface salinity maxima, and Case B where bottom waters are produced at high latitudes but not by sea-ice formation as in the modern ocean. The hypothetical water masses are characterized by examples from the modern ocean and extrapolation to non-glacial times is made by eliminating water masses produced by or influenced by sea-ice formation in modern glacial times. The state of oxidation is made by plotting the model water masses on an oxygen saturation diagram and comparing the relative oxygen capacity with modern conditions of zonal organic productivity. The model indicates for Case A (high latitude temperatures above 5°C) two oxygen, depleted layers in the equatorial regions (1) from about 200m to the depth of completed oxidation of surface material separated by an oxygenated zone to (2) a deep depleted zone along the base of the pycnocline at 2900 M. The deep depleted zone extends along the Case A pycnocline polarward toward the high latitude productivity maximum. For case B with a pycnocline at about 1500m the deep anoxic layer is not sustained. Considerations of density only, suggest that neutral stratification and the potential for overturn is enhanced for climates transitional between Case A and Case B where the density contrast between major water masses

  5. Arsenic in an Alkaline AMD Treatment Sludge: Characterization and Stability Under Prolonged Anoxic Conditions

    SciTech Connect

    Beauchemin, S.; Fiset, J; Poirier, G; Ablett, J

    2010-01-01

    Lime treatment of acid mine drainage (AMD) generates large volumes of neutralization sludge that are often stored under water covers. The sludge consists mainly of calcite, gypsum and a widespread ferrihydrite-like Fe phase with several associated species of metal(loid) contaminants. The long-term stability of metal(loid)s in this chemically ill-defined material remains unknown. In this study, the stability and speciation of As in AMD sludge subjected to prolonged anoxic conditions is determined. The total As concentration in the sludge is 300 mg kg{sup -1}. In the laboratory, three distinct water cover treatments were imposed on the sludge to induce different redox conditions (100%N{sub 2}, 100%N{sub 2} + glucose, 95%N{sub 2}:5%H{sub 2}). These treatments were compared against a control of oxidized, water-saturated sludge. Electron micro-probe (EMP) analysis and spatially resolved synchrotron X-ray fluorescence (SXRF) results indicate that As is dominantly associated with Fe in the sludge. In all treatments and throughout the experiment, measured concentrations of dissolved As were less than 5 {micro}g L{sup -1}. Dissolved Mn concentration in the N{sub 2} + glucose treatment increased significantly compared to other treatments. Manganese and As K-edge X-ray absorption near edge structure spectroscopy (XANES) analyses showed that Mn was the redox-active element in the solid-phase, while As was stable. Arsenic(V) was still the dominant species in all water-covered sludges after 9 months of anoxic treatments. In contrast, Mn(IV) in the original sludge was partially reduced into Mn(II) in all water-covered sludges. The effect was most pronounced in the N{sub 2} + glucose treatment, suggesting microbial reduction. Micro-scale SXRF and XANES analysis of the treated sludge showed that Mn(II) accumulated in areas already enriched in Fe and As. Overall, the study shows that AMD sludges remain stable under prolonged anoxic conditions. External sources of chemical reductants

  6. Jellyfish Lake, Palau: early diagenesis of organic matter in sediments of an anoxic marine lake

    USGS Publications Warehouse

    Orem, W.H.; Burnett, W.C.; Landing, W.M.; Lyons, W.B.; Showers, W.

    1991-01-01

    The major postdepositional change in the sedimentary organic matter is carbohydrate biodegradation. Lignin and aliphatic substances are preserved in the sediments. Dissolved organic matter in pore waters is primarily composed of carbohydrates, reflecting the degradation of sedimentary carbohydrates. Rate constants for organic carbon degradation and sulfate reduction in sediments of the lake are about 10?? lower than in other anoxic sediments. This may reflect the vascular plant source and partly degraded nature of the organic matter reaching the sediments of the lake. -from Authors

  7. Evaluation of metal partitioning and mobility in a sulfidic mine tailing pile under oxic and anoxic conditions.

    PubMed

    Pinto, Patricio X; Al-Abed, Souhail R; Holder, Christopher; Reisman, David J

    2014-07-01

    Mining-influenced water emanating from mine tailings and potentially contaminating surface water and groundwater is one of the most important environmental issues linked to the mining industry. In this study, two subsets of Callahan Mine tailings (mainly comprised of silicates, sulfides, and carbonates) were collected using sealed containers, which allowed keeping the samples under anoxic conditions during transportation and storage. Among the potential contaminants, in spite of high concentrations of Cu, Mn, Pb, and Zn present in the solid mine tailings, only small amounts of Mn and Zn were found in the overlying pore water. The samples were subjected to leaching tests at different reduction-oxidation (redox) conditions to compare metal and S mobilization under oxic and anoxic conditions. It was observed that Cd, Cu, Mn, Pb, S, and Zn were mobilized at higher rates under oxic conditions, while Fe was mobilized at a higher rate under anoxic conditions in comparable constant pH experiments. These results suggest that metal mobilization is significantly impacted by redox conditions. When anoxic metal mobilization assessment is required, it is recommended to always maintain anoxic conditions because oxygen exposure may affect metal mobilization. A sequential extraction performed under oxic conditions revealed that most of the metals in the samples were associated with the sulfidic fraction and that the labile fraction was associated with Mn and moderate amounts of Pb and Zn. PMID:24747936

  8. Effects of Methyl Jasmonate on Acute Stress Responses in Mice Subjected to Forced Swim and Anoxic Tests

    PubMed Central

    Aluko, Oritoke M.; Umukoro, Solomon; Annafi, Olajide S.; Adewole, Folashade A.; Omorogbe, Osarume

    2015-01-01

    Methyl jasmonate (MJ) is an anti-stress hormone released by plants in response to external stressors and aids adaptation to stress. In this study, we evaluated the anti-stress activity of MJ using the forced swim endurance test (FSET) and anoxic tolerance test in mice. Male Swiss mice were given MJ (25–100 mg/kg, i.p) 30 min before the FSET and anoxic test were carried out. The first occurrence of immobility, duration of immobility, time spent in active swimming, and latency to exhaustion were assessed in the FSET. The onset to anoxic convulsion was measured in the anoxic tolerance test. MJ significantly (p < 0.05) delayed the first occurrence of immobility and shortened the period of immobility, which indicates anti-stress property. MJ also increased the time spent in active swimming and prolonged the latency to exhaustion, which further suggests anti-stress activity. In addition, it also exhibited anti-stress property as evidenced by prolonged latency to first appearance of anoxic convulsions. The results of this study suggest that MJ demonstrated anti-stress activity and may be useful as an energizer in times of body weakness or exhaustion. Although more studies are necessary before concluding on how MJ exerts its anti-stress activity, the present data suggest an action similar to adaptogens in boosting energy and resilience in the face of stress. PMID:26839844

  9. Is the Coniacian-Santonian OAE3 a real and global anoxic event ? Insights from Spain, Texas and Egypt

    NASA Astrophysics Data System (ADS)

    Bomou, Brahimsamba; Adatte, Thierry; De Kaenel, Eric; Spangenberg, Jorge; Gertsch, Brian; Föllmi, Karl B.

    2013-04-01

    Several oceanic anoxic episodes (OAE) occurred on a worldwide scale throughout the Cretaceous. They are defined by the widespread accumulation of laminated organic-rich sediments and coincide with a positive excursion in δ13C. The Coniacian-Santonian OAE (= OAE3) is less well known and appears less expressed than the early Aptian and latest Cenomanian OAEs. This OAE appears not to be truly important on a global scale but was more dependent on local or regional conditions, as suggested by the paleogeographic distribution of organic-rich sediments. These are mainly restricted to the equatorial and South Atlantic basins and the Western Interior Seaway, and therein mostly to shallow-water settings and epicontinental seas. The mechanisms and paleoenvironmental conditions leading to and through OAE3 are poorly known, particularly with regards to the marine phosphorus cycle and changes therein, and to the climate conditions in general. Specifically, in our study, we focus on bulk and clay mineralogy, phosphorus, carbon isotopes, high-resolution biostratigraphy, and changes in climate and primary productivity. Several sections from different paleogeographic areas at different paleodepths were studied. Two sections were investigated, are candidates for the global boundary stratotype section and point (GSSP), Olazagutia (NW Spain) and Ten Mile Creek-Arbor Park (Texas, USA); an additional section was analysed in Gabal Ekma (Sinai, Egypt), which exhibits several layers enriched in organic matter associated with extensive bonebeds. In the Olazagutia section, the inoceramid Platyceramus undulatoplicatus, which marks the base of Santonian, occurs well above the Coniacian-Santonian boundary indicated by nannofossil biostratigraphy, and its first occurrence appears to have been environmentally controlled. In Texas, several bentonite layers have been recognized just above the proposed Coniacian-Santonian boundary, which may provide a more accurate age. Based on a weathering index

  10. Oil exploration in nonmarine rift basins of interior Sudan

    SciTech Connect

    Schull, T.J.

    1984-04-01

    In early 1975 Chevron Overseas Petroleum Inc. commenced a major petroleum exploration effort in previously unexplored interior Sudan. With the complete cooperation of the Sudanese Government, Chevron has acquired a vast amount of geologic and geophysical data during the past 9 years. These data include extensive aeromagnetic and gravity surveys, 25,000 mi (40,200 km) of seismic data, and the results of 66 wells. This information has defined several large rift basins which are now recognized as a major part of the Central African rift system. The sedimentary basins of interior Sudan are characterized by thick Cretaceous and Tertiary nonmarine clastic sequences. Over 35,000 ft (10,600 m) of sediment have been deposited in the deepest trough, and extensive basinal areas are underlain by more than 20,000 ft (6100 m) of sediment. The depositional sequence includes thick lacustrine shales and claystones, flood plain claystones, and lacustrine, fluvial, and alluvial sandstones and conglomerates. Those lacustrine claystones which were deposited in an anoxic environment provide oil-prone source rocks. Reservoir sandstones have been found in a wide variety of nonmarine sandstone facies. The extensional tectonism which formed these basins began in the Early Cretaceous. Movement along major fault trends continued intermittently into the Miocene. This deformation resulted in a complex structural history which led to the formation of several deep fault-bounded troughs, major interbasin high trends, and complex basin flanks. This tectonism has created a wide variety of structures, many of which have become effective hydrocarbon traps.

  11. Multi-proxy study of Ocean Anoxic Event 2 (Cenomanian-Turonian) yields new perspective on the drivers for Mesozoic anoxic events

    NASA Astrophysics Data System (ADS)

    Sageman, B. B.; Hurtgen, M.; Jacobson, A. D.; Selby, D. S.

    2015-12-01

    Mesozoic ocean anoxic events have long been a focus of intense study because they appear to reflect a large-scale oscillation of the marine redox state from oxic to anoxic, and at least locally sulfidic. The consensus view on the cause of these events has changed over the past 39 years, since they were first defined. A global net increase in primary production is now widely accepted as the key driver, and the evidence for a volcanic trigger of this process is strong. However, the exact pathway from volcanism to OAE is less certain. Some authors favor the direct role of a massive load of reduced compounds in LIP hydrothermal fluxes for consuming available marine oxygen. Others prefer the indirect pathway of oxygen consumption by enhanced organic matter flux, which requires a major increase in nutrient budgets. Metallic micronutrients in the hydrothermal fluxes have been hypothesized, as have increases in riverine phosphorus fluxes due to enhanced weathering that would result from volcanic CO2 driven warming. Our recent work on the OAE2 interval has led to some new ideas about these hypothesized drivers. In particular, refinement of the Late Cenomanian time scale, and comparison of the geochemical records of d13C, d34S, Osi, P phases, and d44Ca between selected sections in North America and Europe has suggested the following sequence of events: 1) Osi data indicate that the onset of a major volcanic event precedes the positive shift in C-isotopes by at least 40 to possibly 180 kyr; 2) a positive shift in d44Ca data interpreted to indicate ocean acidification is coincident with the volcanic event; 3) the positive shift in C-isotopes is interpreted to reflect the accumulated burial of marine organic matter sufficient to shift the C-reservoir to heavier values; thus, our data suggest that up to 180 kyr was required for the shift in nutrient supply, productivity increase, and organic matter burial. Two mechanisms that conceivably match the lagged character of the event

  12. Leachable Li and Mg Evidence for Hydrological Changes in the Mono Basin, CA, USA

    NASA Astrophysics Data System (ADS)

    Sahajpal, R.; Hemming, N.; Zimmerman, S. R.; Hemming, S. R.

    2007-12-01

    Hydrology in closed basin lakes, such as Mono Lake of the US western Great Basin, is sensitive to regional climate changes. Lake level history of the Mono Basin has been put into a precise age framework using the paleomagnetic intensity of the Wilson Creek Formation sediments to North Atlantic records, and accordingly Greenland's GISP2 oxygen isotope record (Zimmerman et al., 2006, EPSL, v. 252, pp. 94- 106). This allows correlation of the lake level indicators and Greenland climate at high resolution. The physical evidence for lake level, based on the association of strata in near shore terraces, can be confidently correlated to proxies of lake chemistry preserved in the strata. We have tested the application of leachable Li, following the procedure developed by Bischoff et al. (1997, Quaternary Research, v. 48, pp. 313-325) for Owens Lake. At Owens Lake there is a positive correlation between salinity based on diatoms with leachable Li concentrations. In contrast, at Mono Lake the leachable Li concentration follows the bulk carbonate concentration, generally correlating low lake levels (high salinity) with low leachable Li concentrations. Our preferred explanation for both the carbonate and leachable Li concentrations is based on the fact that the Mono Basin rarely overflows, and therefore precipitation of minerals during evaporation leads to chemical divides (Garrels and Mackenzie., 1967, in "Equilibrium Concepts in Natural Water Systems", W. Stumm, Ed., pp. 222-242). As Li behaves conservatively compared to elements like Ca2+ and Mg2+, it might be expected that the leachable Li would be higher when lake level is lower. However, the host for the Li appears to be Mg-smectite. Therefore, the concentration of leachable Li in the sediment is controlled by the concentration of Mg-smectite, as well as the Li/Mg of the water from which the Mg- smectite precipitated and the Kd of the Li into the Mg-smectite. We are studying the Li and Mg systematics of these samples in

  13. Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

    PubMed Central

    Angel, Roey; Claus, Peter; Conrad, Ralf

    2012-01-01

    The prototypical representatives of the Euryarchaeota—the methanogens—are oxygen sensitive and are thought to occur only in highly reduced, anoxic environments. However, we found methanogens of the genera Methanosarcina and Methanocella to be present in many types of upland soils (including dryland soils) sampled globally. These methanogens could be readily activated by incubating the soils as slurry under anoxic conditions, as seen by rapid methane production within a few weeks, without any additional carbon source. Analysis of the archaeal 16S ribosomal RNA gene community profile in the incubated samples through terminal restriction fragment length polymorphism and quantification through quantitative PCR indicated dominance of Methanosarcina, whose gene copy numbers also correlated with methane production rates. Analysis of the δ13C of the methane further supported this, as the dominant methanogenic pathway was in most cases aceticlastic, which Methanocella cannot perform. Sequences of the key methanogenic enzyme methyl coenzyme M reductase retrieved from the soil samples before incubation confirmed that Methanosarcina and Methanocella are the dominant methanogens, though some sequences of Methanobrevibacter and Methanobacterium were also detected. The global occurrence of only two active methanogenic archaea supports the hypothesis that these are autochthonous members of the upland soil biome and are well adapted to their environment. PMID:22071343

  14. Using Biogenic Sulfur Gases as Remotely Detectable Biosignatures on Anoxic Planets

    NASA Astrophysics Data System (ADS)

    Domagal-Goldman, Shawn D.; Meadows, Victoria S.; Claire, Mark W.; Kasting, James F.

    2011-06-01

    We used one-dimensional photochemical and radiative transfer models to study the potential of organic sulfur compounds (CS2, OCS, CH3SH, CH3SCH3, and CH3S2CH3) to act as remotely detectable biosignatures in anoxic exoplanetary atmospheres. Concentrations of organic sulfur gases were predicted for various biogenic sulfur fluxes into anoxic atmospheres and were found to increase with decreasing UV fluxes. Dimethyl sulfide (CH3SCH3, or DMS) and dimethyl disulfide (CH3S2CH3, or DMDS) concentrations could increase to remotely detectable levels, but only in cases of extremely low UV fluxes, which may occur in the habitable zone of an inactive M dwarf. The most detectable feature of organic sulfur gases is an indirect one that results from an increase in ethane (C2H6) over that which would be predicted based on the planet's methane (CH4) concentration. Thus, a characterization mission could detect these organic sulfur gases - and therefore the life that produces them - ;if it could sufficiently quantify the ethane and methane in the exoplanet's atmosphere.

  15. Using biogenic sulfur gases as remotely detectable biosignatures on anoxic planets.

    PubMed

    Domagal-Goldman, Shawn D; Meadows, Victoria S; Claire, Mark W; Kasting, James F

    2011-06-01

    We used one-dimensional photochemical and radiative transfer models to study the potential of organic sulfur compounds (CS(2), OCS, CH(3)SH, CH(3)SCH(3), and CH(3)S(2)CH(3)) to act as remotely detectable biosignatures in anoxic exoplanetary atmospheres. Concentrations of organic sulfur gases were predicted for various biogenic sulfur fluxes into anoxic atmospheres and were found to increase with decreasing UV fluxes. Dimethyl sulfide (CH(3)SCH(3), or DMS) and dimethyl disulfide (CH(3)S(2)CH(3), or DMDS) concentrations could increase to remotely detectable levels, but only in cases of extremely low UV fluxes, which may occur in the habitable zone of an inactive M dwarf. The most detectable feature of organic sulfur gases is an indirect one that results from an increase in ethane (C(2)H(6)) over that which would be predicted based on the planet's methane (CH(4)) concentration. Thus, a characterization mission could detect these organic sulfur gases-and therefore the life that produces them-if it could sufficiently quantify the ethane and methane in the exoplanet's atmosphere. PMID:21663401

  16. Dominant eukaryotic export production during ocean anoxic events reflects the importance of recycled NH4+

    PubMed Central

    Higgins, Meytal B.; Robinson, Rebecca S.; Husson, Jonathan M.; Carter, Susan J.; Pearson, Ann

    2012-01-01

    The Mesozoic is marked by several widespread occurrences of intense organic matter burial. Sediments from the largest of these events, the Cenomanian–Turonian Oceanic Anoxic Event (OAE 2) are characterized by lower nitrogen isotope ratios than are seen in modern marine settings. It has remained a challenge to describe a nitrogen cycle that could achieve such isotopic depletion. Here we use nitrogen-isotope ratios of porphyrins to show that eukaryotes contributed the quantitative majority of export production throughout OAE 2, whereas cyanobacteria contributed on average approximately 20%. Such data require that any explanation for the OAE nitrogen cycle and its isotopic values be consistent with a eukaryote-dominated ecosystem. Our results agree with models that suggest the OAEs were high-productivity events, supported by vigorous upwelling. Upwelling of anoxic deep waters would have supplied reduced N species (i.e., ) to primary producers. We propose that new production during OAE 2 primarily was driven by direct -assimilation supplemented by diazotrophy, whereas chemocline denitrification and anammox quantitatively consumed and . A marine nitrogen reservoir dominated by , in combination with known kinetic isotope effects, could lead to eukaryotic biomass depleted in 15N. PMID:22315397

  17. Anoxic Oxidation of Arsenite Linked to Denitrification in Sludges and Sediments

    PubMed Central

    Sun, Wenjie; Sierra, Reyes; Field, Jim A.

    2008-01-01

    In this study, denitrification linked to the oxidation of arsenite (As(III)) to arsenate (As(V)) was shown to be a widespread microbial activity in anaerobic sludge and sediment samples that were not previously exposed to arsenic contamination. When incubated with 0.5 mM As(III) and 10 mM NO3−, the anoxic oxidation of As(III) commenced within a few days, achieving specific activities of up to 1.24 mmol As(V) formed g−1 volatile suspended solids d−1 due to growth (doubling times of 0.74 to 1.4 d). The anoxic oxidation of As(III) was partially to completely inhibited by 1.5 and 5 mM As(III), respectively. Inhibition was minimized by adding As(III) adsorbed onto activated aluminum (AA). The oxidation of As(III) was shown to be linked to the complete denitrification of NO3− to N2 by demonstrating a significantly enhanced production of N2 beyond the background endogenous production as a result of adding As(III)-AA to the cultures. The N2 production corresponded closely the expected stoichiometry of the reaction, 2.5 mol As(III) mol−1 N2-N. The oxidation of As(III) linked to the use of common occuring nitrate as an electron acceptor may be an important missing link in the biogeochemical cycling of arsenic. PMID:18762312

  18. Perils of categorical thinking: "Oxic/anoxic" conceptual model in environmental remediation

    USGS Publications Warehouse

    Bradley, Paul M.

    2012-01-01

    Given ambient atmospheric oxygen concentrations of about 21 percent (by volume), the lower limit for reliable quantitation of dissolved oxygen concentrations in groundwater samples is in the range of 0.1–0.5 mg/L. Frameworks for assessing in situ redox condition are often applied using a simple two-category (oxic/anoxic) model of oxygen condition. The "oxic" category defines the environmental range in which dissolved oxygen concentrations are clearly expected to impact contaminant biodegradation, either by supporting aerobic biodegradation of electron-donor contaminants like petroleum hydrocarbons or by inhibiting anaerobic biodegradation of electron-acceptor contaminants like chloroethenes. The tendency to label the second category "anoxic" leads to an invalid assumption that oxygen is insignificant when, in fact, the dissolved oxygen concentration is less than detection but otherwise unknown. Expressing dissolved oxygen concentrations as numbers of molecules per volume, dissolved oxygen concentrations that fall below the 0.1 mg/L field detection limit range from 1 to 1017 molecules/L. In light of recent demonstrations of substantial oxygen-linked biodegradation of chloroethene contaminants at dissolved oxygen concentrations well below the 0.1–0.5 mg/L field detection limit, characterizing "less than detection" oxygen concentrations as "insignificant" is invalid.

  19. Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile.

    PubMed

    Lakshmanan, Meiyappan; Mohanty, Bijayalaxmi; Lim, Sun-Hyung; Ha, Sun-Hwa; Lee, Dong-Yup

    2014-01-01

    The ability of rice to germinate under anoxia by extending the coleoptile is a highly unusual characteristic and a key feature underpinning the ability of rice seeds to establish in such a stressful environment. The process has been a focal point for research for many years. However, the molecular mechanisms underlying the anoxic growth of the coleoptile still remain largely unknown. To unravel the key regulatory mechanisms of rice germination under anoxic stress, we combined in silico modelling with gene expression data analysis. Our initial modelling analysis via random flux sampling revealed numerous changes in rice primary metabolism in the absence of oxygen. In particular, several reactions associated with sucrose metabolism and fermentation showed a significant increase in flux levels, whereas reaction fluxes across oxidative phosphorylation, the tricarboxylic acid cycle and the pentose phosphate pathway were down-regulated. The subsequent comparative analysis of the differences in calculated fluxes with previously published gene expression data under air and anoxia identified at least 37 reactions from rice central metabolism that are transcriptionally regulated. Additionally, cis-regulatory content analyses of these transcriptionally controlled enzymes indicate a regulatory role for transcription factors such as MYB, bZIP, ERF and ZnF in transcriptional control of genes that are up-regulated during rice germination and coleoptile elongation under anoxia. PMID:24894389

  20. Protective Effect of Ginsenoside R0 on Anoxic and Oxidative Damage In vitro.

    PubMed

    Jiang, Zhou; Wang, Yuhui; Zhang, Xiaoyun; Peng, Tao; Li, Yanqing; Zhang, Yi

    2012-11-01

    To examine the neuroprotective effects of ginsenoside R0, we investigated the effects of ginsenoside R0 in PC12 cells under an anoxic or oxidative environment with Edaravone as a control. PC12 neuroendocrine cells were used as a model target. Anoxic damage or oxidative damage in PC12 cells were induced by adding sodium dithionite or hydrogen peroxide respectively in cultured medium. Survival ratios of different groups were detected by an AlamarBlue assay. At the same time, the apoptosis of PC12 cells were determined with flow cytometry. The putative neuroprotective effects of ginsenoside R0 is thought to be exerted through enhancing the activity of antioxidant enzymes Superoxide dismutases (SOD). The activity of SOD and the level of malondialdehyde (MDA) and intracellular reactive oxygen species (ROS), were measured to evaluate the protective and therapeutic effects of ginsenoside R0. Ginsenoside R0 treated cells had a higher SOD activity, lower MDA level and lower ROS, and their survival ratio was higher with a lower apoptosis rate. It is suggested that ginsenoside R0 has a protective effect in the cultured PC12 cells, and the protection efficiency is higher than Edaravone. The protective mechanisms of these two are different. The prevent ability of ginsenoside R0 is higher than its repair ability in neuroprotection in vitro. PMID:24009848

  1. Lenticulostriate arterial distribution pathology may underlie pediatric anoxic brain injury in drowning.

    PubMed

    Ishaque, Mariam; Manning, Janessa H; Woolsey, Mary D; Franklin, Crystal G; Tullis, Elizabeth W; Fox, Peter T

    2016-01-01

    Drowning is a leading cause of neurological morbidity and mortality in young children. Anoxic brain injury (ABI) can result from nonfatal drowning and typically entails substantial neurological impairment. The neuropathology of drowning-induced pediatric ABI is not well established. Specifically, quantitative characterization of the spatial extent and tissue distribution of anoxic damage in pediatric nonfatal drowning has not previously been reported but could clarify the underlying pathophysiological processes and inform clinical management. To this end, we used voxel-based morphometric (VBM) analyses to quantify the extent and spatial distribution of consistent, between-subject alterations in gray and white matter volume. Whole-brain, high-resolution T1-weighted MRI datasets were acquired in 11 children with chronic ABI and 11 age- and gender-matched neurotypical controls (4-12 years). Group-wise VBM analyses demonstrated predominantly central subcortical pathology in the ABI group in both gray matter (bilateral basal ganglia nuclei) and white matter (bilateral external and posterior internal capsules) (P < 0.001); minimal damage was found outside of these deep subcortical regions. These highly spatially convergent gray and white matter findings reflect the vascular distribution of perforating lenticulostriate arteries, an end-arterial watershed zone, and suggest that vascular distribution may be a more important determinant of tissue loss than oxygen metabolic rate in pediatric ABI. Further, these results inform future directions for diagnostic and therapeutic modalities. PMID:26937385

  2. Oxidation of dissolved elemental mercury by thiol compounds under anoxic conditions

    SciTech Connect

    Zheng, Wang; Lin, Hui; Mann, Benjamin F; Liang, Liyuan; Gu, Baohua

    2013-01-01

    Mercuric mercury, Hg(II), forms strong complexes with thiol compounds that commonly dominate Hg(II) speciation in natural freshwater. However, reactions between dissolved elemental Hg(0) and thiols are not well understood although these processes are likely to be important in determining Hg speciation and geochemical cycling in the environment. In this study, reaction rates and mechanisms between dissolved Hg(0) and a number of selected organic ligands with varying molecular structures and sulfur (S) oxidation states were determined to assess the role of these ligands in Hg(0) redox transformation. We found that all thiols caused oxidation of Hg(0) under anoxic conditions but, contrary to expectation, compounds with higher S-oxidation states (e.g., disulfide) than thiols exhibited little or no reactivity with Hg(0) at pH 7. The rate and extent of Hg(0) oxidation varied widely, with smaller aliphatic thiols showing the greatest degree of oxidation. The mechanism of the oxidation is attributed to a two-step process involving adsorption of Hg(0) to thiols followed by the charge transfer from Hg(0) to electron acceptors. These observations demonstrate a unique thiol-induced oxidation pathway of dissolved Hg(0), with important implications for the redox transformation, speciation, and bioavailability of Hg for microbial methylation in anoxic environments.

  3. Effect of dichloroacetate in the treatment of anoxic lactic acidosis in dogs.

    PubMed

    Sheikh, A; Fleisher, G; Delgado Paredes, C; Caputo, G; Schaible, D; Egler, J; Swedlow, D

    1986-11-01

    Lactic acidosis is seen frequently after severe anoxia and circulatory failure. Because dichloroacetate (DCA) has been shown to be effective in the treatment of lactic acidosis, we studied its effect on lactate levels and pH in arterial and sagittal sinus blood specimens in a pediatric canine model of anoxic cardiac arrest followed by CPR. Lactate levels rose steadily in all puppies receiving DCA alone (group 1), DCA plus bicarbonate (group 2), bicarbonate alone (group 3), or neither drug (group 4). Arterial and sagittal-sinus lactate levels were in the range of 2 mmol/L during the baseline period, 6 mmol/L after anoxic arrest, and 10 mmol/L after 20 min of CPR. Bicarbonate, but not DCA, significantly raised arterial pH. Neither drug reversed the progression of acidosis in the sagittal sinus; mean pH ranged from 6.85 to 6.92 among the four groups after 20 min of CPR. We speculate that DCA did not decrease lactate levels or raise the pH in either the peripheral circulation or the CNS (sagittal sinus) because of poor perfusion achieved during closed-chest cardiac compression. PMID:3021391

  4. Lenticulostriate arterial distribution pathology may underlie pediatric anoxic brain injury in drowning

    PubMed Central

    Ishaque, Mariam; Manning, Janessa H.; Woolsey, Mary D.; Franklin, Crystal G.; Tullis, Elizabeth W.; Fox, Peter T.

    2016-01-01

    Drowning is a leading cause of neurological morbidity and mortality in young children. Anoxic brain injury (ABI) can result from nonfatal drowning and typically entails substantial neurological impairment. The neuropathology of drowning-induced pediatric ABI is not well established. Specifically, quantitative characterization of the spatial extent and tissue distribution of anoxic damage in pediatric nonfatal drowning has not previously been reported but could clarify the underlying pathophysiological processes and inform clinical management. To this end, we used voxel-based morphometric (VBM) analyses to quantify the extent and spatial distribution of consistent, between-subject alterations in gray and white matter volume. Whole-brain, high-resolution T1-weighted MRI datasets were acquired in 11 children with chronic ABI and 11 age- and gender-matched neurotypical controls (4–12 years). Group-wise VBM analyses demonstrated predominantly central subcortical pathology in the ABI group in both gray matter (bilateral basal ganglia nuclei) and white matter (bilateral external and posterior internal capsules) (P < 0.001); minimal damage was found outside of these deep subcortical regions. These highly spatially convergent gray and white matter findings reflect the vascular distribution of perforating lenticulostriate arteries, an end-arterial watershed zone, and suggest that vascular distribution may be a more important determinant of tissue loss than oxygen metabolic rate in pediatric ABI. Further, these results inform future directions for diagnostic and therapeutic modalities. PMID:26937385

  5. Determination of the nitrous oxide emission potential of deammonification under anoxic conditions.

    PubMed

    Schneider, Y; Beier, M; Rosenwinkel, K-H

    2011-12-01

    Various studies have been performed to determine nitrous oxide (N2O) emissions from conventional biological nitrogen removal processes in wastewater treatment like nitrification and denitrification in the main stream. However, with respect to the overall emissions of a wastewater treatment plant, part-stream treatment for high-strength wastewater (e.g., sludge liquor) is also expected to hold a significant emission potential because of high concentrations and extreme boundary conditions. This paper presents results from a laboratory-scale study on nitrous oxide production by biomass from a deammonification process (nitritation + anammox) under anoxic conditions. It was discovered that N2O formation results from incomplete endogenous denitrification rather than anammox and is dependent on substrate availability. Based on direct measurements of the dissolved N2O concentrations in a sequencing batch reactor, the dynamic behavior of N2O production is characterized in more detail. The results show that, during anoxic conditions, the N2O emission potential of deammonification is significantly lower than from conventional denitrification. PMID:22368962

  6. Effects of extracellular polymeric substances on granulation of anoxic sludge in sequencing batch reactor.

    PubMed

    Wang, Binbin; Liu, Shunlian; Zhao, Hongmei; Zhang, Xinyan; Peng, Dangcong

    2012-01-01

    Variations of extracellular polymeric substances (EPS) and its components with sludge granulation were examined in a lab-scale sequencing batch reactor (SBR) which was fed with sodium nitrate and sodium acetate. Ultrasonication plus cation exchange resin (CER) were used as the EPS extraction method. Results showed that after approximately 90 d cultivation, the sludge in the reactor was almost granulated. The content of extracellular polysaccharides increased from 10.36 mg/g-VSS (volatile suspended solids) at start-up with flocculent sludge to 23.18 mg/g-VSS at 91 d with matured granular sludge, while the content of extracellular proteins were almost unchanged. Polysaccharides were the major components of EPS in anoxic granular sludge, accounting for about 70.6-79.0%, while proteins and DNA accounted for about 16.5-18.9% and 4.6-9.9%, respectively. It is proposed that EPS play a positive role in anoxic sludge granulation and polysaccharides might be strongly involved in aggregation of flocs into granules. PMID:22744684

  7. Methane production and simultaneous sulphate reduction in anoxic, salt marsh sediments

    USGS Publications Warehouse

    Oremland, R.S.; Marsh, L.M.; Polcin, S.

    1982-01-01

    It has been generally believed that sulphate reduction precludes methane generation during diagenesis of anoxic sediments1,2. Because most biogenic methane formed in nature is thought to derive either from acetate cleavage or by hydrogen reduction of carbon dioxide3-6, the removal of these compounds by the energetically more efficient sulphate-reducing bacteria can impose a substrate limitation on methanogenic bacteria 7-9. However, two known species of methanogens, Methanosarcina barkeri and Methanococcus mazei, can grow on and produce methane from methanol and methylated amines10-13. In addition, these compounds stimulate methane production by bacterial enrichments from the rumen11,14 and aquatic muds13,14. Methanol can enter anaerobic food webs through bacterial degradation of lignins15 or pectin16, and methylated amines can be produced either from decomposition of substances like choline, creatine and betaine13,14 or by bacterial reduction of trimethylamine oxide17, a common metabolite and excretory product of marine animals. However, the relative importance of methanol and methylated amines as precursors of methane in sediments has not been previously examined. We now report that methanol and trimethylamine are important substrates for methanogenic bacteria in salt marsh sediments and that these compounds may account for the bulk of methane produced therein. Furthermore, because these compounds do not stimulate sulphate reduction, methanogenesis and sulphate reduction can operate concurrently in sulphate-containing anoxic sediments. ?? 1982 Nature Publishing Group.

  8. Effects of sludge retention time on oxic-settling-anoxic process performance: Biosolids reduction and dewatering properties.

    PubMed

    Semblante, Galilee U; Hai, Faisal I; Bustamante, Heriberto; Price, William E; Nghiem, Long D

    2016-10-01

    In this study, the effect of sludge retention time (SRT) on oxic-settling-anoxic (OSA) process was determined using a sequencing batch reactor (SBR) attached to external aerobic/anoxic reactors. The SRT of the external reactors was varied from 10 to 40d. Increasing SRT from 10 to 20d enhanced volatile solids destruction in the external anoxic reactor as evidenced by the release of nutrients, however, increasing the SRT to 40d did not enhance volatile solids destruction further. Relatively short SRT (10-20d) favoured the conversion of destroyed solids into inert products. The application of an intermediate SRT (20d) of the external reactor showed the highest sludge reduction performance (>35%). Moreover, at the optimum SRT, OSA improved sludge dewaterability as demonstrated by lower capillary suction time and higher dewatered cake solids content. PMID:27474952

  9. Redox processes as revealed by voltammetry in the surface sediments of the Gotland Basin, Baltic Sea

    NASA Astrophysics Data System (ADS)

    Yücel, Mustafa; Dale, Andy; Sommer, Stefan; Pfannkuche, Olaf

    2014-05-01

    Sulfur cycling in marine sediments undergoes dramatic changes with changing redox conditions of the overlying waters. The upper sediments of the anoxic Gotland Basin, central Baltic Sea represent a dynamic redox environment with extensive mats of sulfide oxidizing bacteria covering the seafloor beneath the chemocline. In order to investigate sulfur redox cycling at the sediment-water interface, sediment cores were sampled over a transect covering 65 - 174 m water depth in August-September 2013. High resolution (0.25 mm minimum) vertical microprofiles of electroactive redox species including dissolved sulfide and iron were obtained with solid state Au-Hg voltammetric microelectrodes. This approach enabled a fine-scale comparison of porewater profiles across the basin. The steepest sulfide gradients (i.e. the highest sulfide consumption) occurred within the upper 10 mm in sediments covered by surficial mats (2.10 to 3.08 mmol m-2 day-1). In sediments under permanently anoxic waters (>140m), voltammetric signals for Fe(II) and aqueous FeS were detected below a subsurface maximum in dissolved sulfide, indicating a Fe flux originating from older, deeper sedimentary layers. Our results point to a unique sulfur cycling in the Gotland basin seafloor where sulfide accumulation is moderated by sulfide oxidation at the sediment surface and by FeS precipitation in deeper sediment layers. These processes may play an important role in minimizing benthic sulfide fluxes to bottom waters around the major basins of the Baltic Sea.

  10. Metabolic Strategies in Energy-Limited Microbial Communities in the Anoxic Subsurface (Frasassi Cave System, Italy)

    NASA Astrophysics Data System (ADS)

    McCauley, R. L.; Jones, D. S.; Schaperdoth, I.; Steinberg, L.; Macalady, J. L.

    2010-12-01

    Two major sources of energy, light and chemical potential, are available to microorganisms. However, energy is not always abundant and is often a limiting factor in microbial survival and replication. The anoxic, terrestrial subsurface offers a unique opportunity to study microorganisms and their potentially novel metabolic strategies that are relevant for understanding biogeochemistry and biosignatures as related to the non-photosynthetic, energy-limited environments on the modern and ancient Earth and elsewhere in the solar system. Geochemical data collected in a remote stratified lake 600 m below ground surface in the sulfidic Frasassi cave system (Italy) suggest that little redox energy is available for life, consistent with low signal from domain-specific FISH probes. The carbon isotope signatures of biofilms (-33‰) and DIC (-9‰) in the anoxic water suggest in situ production by lithoautotrophs using RuBisCO. 16S rDNA libraries constructed from the biofilm are dominated by diverse sulfate reducing bacteria. The remaining bacterial and archaeal clones affiliate with more than 11 major uncultivated or novel prokaryotic lineages. Diverse dsrAB gene sequences are consistent with high sulfate concentrations and undetectable or extremely low oxygen, nitrate, and iron concentrations. However, the electron donor for sulfate reduction is unclear. Methane is detectable in the anoxic water although no 16S rDNA sequences associated with known methanogens or anaerobic methane oxidizers were retrieved. mcrA gene sequences retrieved from the biofilm by cloning are not related to cultivated methanogens or to known anaerobic methane oxidizers. Non-purgable organic carbon (NPOC) is below detection limits (i.e. <42 μM acetate) suggesting that alternative electron donors or novel metabolisms may be important. A sample collected by cave divers in October 2009 was pyrosequenced at the Pennsylvania State University Genomics Core Facility using Titanium chemistry (454 Life

  11. Artificial mouth opening fosters anoxic conditions that kill small estuarine fish

    NASA Astrophysics Data System (ADS)

    Becker, Alistair; Laurenson, Laurie J. B.; Bishop, Kylie

    2009-05-01

    Fish kills are not uncommon within estuaries in many regions of the world. In seasonally open systems, which are common in temperate areas, they are often associated with mouth openings. Such a kill occurred in July 2005 in the Surrey Estuary following a closed mouth period of seven months resulting in the loss of many thousands of fish. At the time the fish community within the estuary was under investigation which provided comprehensive data of this population prior to the kill. Monthly water quality monitoring was also being conducted prior to the kill and also carried out on a daily basis following the mouth opening. The Surrey was stratified during the closed mouth phase, isolated waters below the halocline had stagnated and become anoxic. As a result only waters above the halocline contained oxygen concentrations capable of sustaining most fish. It appears that if a mouth opening happens under low flow conditions, a shearing effect occurs within the water column where surface waters flow out to sea leaving deeper waters behind. This resulted in only anoxic waters being present for in excess of six days and was responsible for the fish kill. Fish sampling of the Surrey Estuary was conducted three and six months following the kill and those data were compared to that collected in the 12 months prior to the event. Three months after the kill few fish were collected within the estuary and included marine opportunists near the mouth and estuarine resident species in the far upper reaches of the system. However six months following the kill large numbers of estuarine resident species were collected throughout the Surrey Estuary. As many species were euryhaline, it is believed that some individuals migrated into freshwater reaches of the Surrey to escape the anoxic conditions within the estuary. As conditions improved they recolonised the Surrey Estuary. The high fecundity and rapid growth of these small, short lived species probably aided in their re

  12. Oxygen as Intermediate in Anoxic Environments: Nitrite-Dependent Methane Oxidation and Beyond

    NASA Astrophysics Data System (ADS)

    Ettwig, K. F.

    2014-12-01

    In recent years the known diversity of hydrocarbon activation mechanisms under anaerobic conditions has been extended by intra-aerobic denitrification, a process in which oxygen is derived from NO and used for substrate activation. For two phylogenetically unrelated bacterial species, the freshwater NC10 phylum bacterium Methylomirabilis oxyfera [1] and the marine γ-proteobacterial strain HdN1 [2] it has been shown that, under anoxic conditions with nitrate and/or nitrite, mono-oxygenases are used for methane and hexadecane oxidation, respectively. No degradation was observed with nitrous oxide (N2O) only. In the anaerobic methanotroph M. oxyfera, which lacks apparent nitrous oxide reductase in its genome, substrate activation in the presence of nitrite was directly associated with both O2 and N2 formation. These findings strongly argue for the role of nitric oxide (NO), or an oxygen species derived from it, in the activation reaction of methane. Although intracellular oxygen generation has been experimentally documented and elegantly explains the utilization of 'aerobic' pathways under anoxic conditions, research about the underlying molecular mechanism has just started. The proposed candidate enzymes for oxygen (or possibly another another reactive intermediate) production from NO, an NO dismutase (NOD) [3], related to quinol-dependent NO reductases (qNORs), is present and highly expressed in both M. oxyfera and strain HdN1. Besides that, several recently sequenced species from the Cytophaga-Flavobacterium-Bacteroides group harbor Nod/Nor genes, but experimential evidence is needed to show if these have NOD activity, are unusual but functional qNORs, or represent transition states between the two. Additionally, for several anaerobic hydrocarbon-degrading organisms the biochemical mechanism of substrate activation has not been elucidated yet: whereas signature genes of anaerobic degradation are missing, monooxygenase genes are present. Also these microorganisms

  13. Proxies for Redox Conditions during early Aptian Ocean Anoxic Event 1a

    NASA Astrophysics Data System (ADS)

    Brassell, S. C.

    2012-04-01

    Reports of higher concentrations of biomarkers for photic zone anoxia, namely isorenieratane and chlorobactane, in sediments that correspond to warmer episodes during the Cenomanian-Turonian oceanic anoxic event (OAE2) prompts consideration of the potential association of ocean stratification and anoxia with enhanced temperatures during other Ocean Anoxic Events (OAE). Recognition of temperature variations based on the TEX86 proxy for a sediment sequence rich in organic matter from Shatsky Rise (ODP Site 1207) corresponding to OAE1a (early Aptian) affords the opportunity for such an investigation. Moreover, the 50 cm continuous section of this OAE1a interval that was recovered enabled sampling to examine detailed stratigraphic variations in the abundances and compositions of a range of geochemical characteristics, both molecular and elemental, including possible biological responses to temperature fluctuations and other palaeoenvironmental conditions, notably the levels of oxygenation of the depositional setting. The temperature-dependent variations in biomarkers and other geochemical proxies through the OAE1a interval included: (i) decreasing concentrations of 2-methylhopanes derived from cyanobacteria with increasing temperature, and (ii) fluctuations in V concentrations that reflect temperature trends, and correspond closely with organic C contents, except where Corg >30%. Among parameters linked to levels of oxygenation, the biomarker constituents in the OAE1a interval include steroidal and hopanoid ketones consistent with an oxygenated water column, but the sediments also contain traces of isorenieratane from green sulphur bacteria suggesting intermittent photic zone anoxia. Similarly, the observed values far exceeding unity for the lycopane index [(lycopane + n-C35)/n-C31] imply anoxic bottom waters, although the location of Shatsky Rise in the mid-Pacific during the Aptian may skew this ratio because of the paucity of biological sources for n-C31. In

  14. Hydrothermal synthesis of oxygen functionalized S-P codoped g-C3N4 nanorods with outstanding visible light activity under anoxic conditions.

    PubMed

    Hu, Shaozheng; Ma, Lin; Xie, Ying; Li, Fayun; Fan, Zhiping; Wang, Fei; Wang, Qiong; Wang, Yanjuan; Kang, Xiaoxue; Wu, Guang

    2015-12-28

    Extending the application of photocatalytic oxidation technology to the anoxic removal of organic pollutants that exist under some oxygen-free conditions is attractive but challenging. In this study, oxygen functionalized S-P codoped g-C3N4 nanorods with outstanding visible light activity under anoxic conditions are synthesized using a hydrothermal post-treatment. S and P codoping inhibits the crystal growth of graphitic carbon nitride, enhances the SBET, decreases the band gap energy, and increases the separation efficiency of photogenerated electrons and holes, which increases the anoxic photocatalytic RhB degradation constant by approximately 6.5 times. Oxygen functionalization not only increases the adsorption ability of graphitic carbon nitride but also captures the photogenerated electrons to produce photogenerated holes for RhB degradation under anoxic conditions, leading to a doubling of the RhB degradation constant. This study provides new insight into the design and fabrication of anoxic photocatalysts. PMID:26571403

  15. Consequences of artificial deepwater ventilation in the Bornholm Basin for oxygen conditions, cod reproduction and benthic biomass - a model study

    NASA Astrophysics Data System (ADS)

    Stigebrandt, A.; Rosenberg, R.; Råman Vinnå, L.; Ödalen, M.

    2014-07-01

    We develop and use a circulation model to estimate hydrographical and ecological changes in the isolated basin water of the Bornholm Basin. By pumping well oxygenated so-called winter water, residing beneath the level of the summer thermocline, to the greatest depth of the basin, where it is forced to mix with the resident water, the rate of density reduction should increase and thereby the frequency of intrusions of new oxygen-rich deepwater. We show that pumping 1000 m3 s-1 should increase the rates of water exchange and oxygen supply by 2.5 and 3 times, respectively. The CRV (Cod Reproduction Volume), the volume of water in the isolated basin meeting the requirements for successful cod reproduction (S > 11, O2 > 2 mL L-1), should every year be greater than 54 km3, which is an immense improvement since it in certain years is currently much less. Anoxic bottoms should no longer occur in the basin and hypoxic events will become rare. This should permit extensive colonization of fauna on the earlier periodically anoxic bottoms. Increased biomass of benthic fauna should also mean increased food supply to economically valuable demersal fish like cod and flatfish. In addition, the bioturbation activity and re-oxygenation of the sediments should lead to increased phosphorus retention by the sediments.

  16. Microbial pathways for the mobilization of mercury as Hg(O) in anoxic subsurface environments

    SciTech Connect

    Barkay, Tamar

    2005-06-01

    The goal of our project which was initiated in June 2005 is focused on the presence of merA in microbial communities of anoxic environments and the effect of anaerobic respiratory pathways on MR expression and activities. The following progress has been made to date: PCR primers were designed to span the known phylogenetic range of merA genes of Gram-negative bacteria. In control experiments, these primers successfully amplified a 288 bp region at the 3? end of previously characterized merA genes from Shewanella putrefaciens pMERPH, Acidithiobacillus ferrooxidans, Pseudomonas stutzeri pPB, Tn5041, Pseudomonas sp. K-62, and Serratia marcescens pDU1358.

  17. Rogoznica Lake (Croatia), a unique anoxic seawater system on the Adriatic coast under the anthropogenic pressures

    NASA Astrophysics Data System (ADS)

    Ciglenečki, Irena; Bura-Nakić, Elvira; Marguš, Marija; Čanković, Milan; Carić, Marina; Viličić, Damir; Ljubešić, Zrinka; Kršinić, Frano; Batistić, Mirna; Janeković, Ivica; Plavčić, Filip

    2014-05-01

    Rogoznica Lake is a typical example of euxinic saline lake, situated on the eastern Adriatic coast (43o32'N 15o58'E). It is a karstic depression filled with seawater, with an area of 10276 m2 and a maximum depth of 15m The lake has circular shape and is surrounded with sheer, karstic cliffs (4-23 m high), which completely protect the lake from the influence of the wind. During the year the lake is thermally, densely and chemically stratified into oxic and anoxic layers. The surface water is well oxygenated, while hypoxia/anoxia occurs in the bottom layer. The mixolimnion varies seasonally and it is greatly influenced by meteorological conditions (temperature, wind, rainfall) which also influence the water layer mixing. Vertical mixing usually occurs during autumn/winter when cold, oxygen-rich water from the surface sinks downwards. Depending on the intensity of the mixing process anoxic conditions in the entire water column could appear. At the boundary oxia-anoxia usually a pinky colored chemocline layer, cca 50 cm thick develops. Anoxic deep water is characterized by high concentrations of reduced sulfur compounds (RSS up to 1mM, mainly in the form of sulfide), and nutrients (NH4+, up to 150 μM; PO43-, up to 22 μM; SiO44-, up to 400 μM) as well as dissolved organic carbon (DOC up to 6 mg l-1) indicating the pronounced remineralization of allochthonous organic matter produced in the surface water The eutrophication of the lake is strongly influenced by nutrient recycling under anaerobic conditions. Due to the extreme ecological conditions which prevail in this lake, phyto- and zooplankton populations are represented by a relatively small number of species, some of them, however, in the populations denser than those in the surrounding sea. After the period of total anoxia appearance, the number of species and their abundance are significantly reduced in comparison with the pre-anoxia values. Diatoms were found to be the dominant microphytoplankton group while

  18. The effect of certain biochemical factors on well clogging under suboxic and mildly anoxic conditions.

    PubMed

    Dimkić, M; Pušić, M; Obradović, V; Kovačević, S

    2012-01-01

    Research conducted at the Belgrade Groundwater Source in Serbia has shown that significant well screen clogging processes take place under reduced oxic and initial anoxic conditions. Criteria for the prevention, or deceleration, of clogging are becoming more relevant to well ageing, compared with classical, mechanical clogging criteria and the permissible entrance velocities derived from them. The research project was later expanded to encompass other alluvial sources, which feature distinct oxic conditions. This paper presents some of the outcomes of this project, which shed light on the correlation between certain important indicators of well screen clogging (such as the redox potential and iron concentration) and the rate of increase in local hydraulic resistance at the wells. PMID:22643417

  19. [Modeling and dynamic simulation of the multimode anaerobic/anoxic/aerobic wastewater treatment process].

    PubMed

    Zhou, Zhen; Wu, Zhi-Chao; Wang, Zhi-Wei; Du, Xing-Zhi; Jiang, Ling-Yan; Xing, Can

    2013-04-01

    Mathematical modeling is a useful tool for professional education, process development, design evaluation, operational optimization and automatic control of the wastewater treatment system, and has been extensively applied in numerous full-scale wastewater treatment plants. The ASM2d model was calibrated by the process data, and used to simulate 15 operational test runs of the multimode anaerobic/anoxic/aerobic (AAO) process. After calibration, the model was capable of simulating the sludge concentrations and effluent data in 15 test runs of the multimode AAO system. The dynamic simulation results showed an overall good agreement between the measured and simulated data, for both effluent data and sludge concentrations, with a good reproduction of dynamic processes in AO test runs. PMID:23798127

  20. Coming back to oneself: a case of anoxic brain damage from a phenomenological perspective.

    PubMed

    Fürst, Elisabeth L'orange

    2015-03-01

    Struck by a cardiac arrest that lasted 3/4 of an hour, a 53-year-old man suddenly collapsed one day at work. The result was a serious anoxic brain damage that developed into dementia. This essay presents the process of 'coming back to himself' while it questions what this concept might imply. The descriptions and analyses rest upon an ethnographic study of his life, at hospitals and then at home, assisted by his wife, who is also the author of this article. Theoretically, the analysis depends on Merleau-Ponty's phenomenology of perception and is also based on the therapeutic use of music in treating people with dementia championed by Oliver Sachs. It is argued that the field of medicine has much to learn from the anthropological method of long-term observation, as well as theories of embodiment that see the body as simultaneously being an object and a subject. PMID:25300711

  1. Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone.

    PubMed

    Astorga-Eló, Marcia; Ramírez-Flandes, Salvador; DeLong, Edward F; Ulloa, Osvaldo

    2015-05-01

    Cyanobacteria of the genus Prochlorococcus are the most abundant photosynthetic marine organisms and key factors in the global carbon cycle. The understanding of their distribution and ecological importance in oligotrophic tropical and subtropical waters, and their differentiation into distinct ecotypes, is based on genetic and physiological information from several isolates. Currently, all available Prochlorococcus genomes show their incapacity for nitrate utilization. However, environmental sequence data suggest that some uncultivated lineages may have acquired this capacity. Here we report that uncultivated low-light-adapted Prochlorococcus from the nutrient-rich, low-light, anoxic marine zone (AMZ) of the eastern tropical South Pacific have the genetic potential for nitrate uptake and assimilation. All genes involved in this trait were found syntenic with those present in marine Synechococcus. Genomic and phylogenetic analyses also suggest that these genes have not been aquired recently, but perhaps were retained from a common ancestor, highlighting the basal characteristics of the AMZ lineages within Prochlorococcus. PMID:25700337

  2. Photocatalytic decomposition of humic acids in anoxic aqueous solutions producing hydrogen, oxygen and light hydrocarbons.

    PubMed

    Klauson, Deniss; Budarnaja, Olga; Beltran, Ignacio Castellanos; Krichevskaya, Marina; Preis, Sergei

    2014-01-01

    Photocatalytic water splitting for hydrogen and oxygen production requires sacrificial electron donors, for example, organic compounds. Titanium dioxide catalysts doped with platinum, cobalt, tungsten, copper and iron were experimentally tested for the production of hydrogen, oxygen and low molecular weight hydrocarbons from aqueous solutions of humic substances (HS). Platinum-doped catalyst showed the best results in hydrogen generation, also producing methane, ethene and ethane, whereas the best oxygen production was exhibited by P25, followed by copper--and cobalt-containing photocatalysts. Iron-containing photocatalyst produced carbon monoxide as a major product. HS undergoing anoxic photocatalytic degradation produce hydrogen with minor hydrocarbons, and/or oxygen. It appears that better hydrogen yield is achieved when direct HS splitting takes place, as opposed to HS acting as electron donors for water splitting. PMID:25145176

  3. Integrative approach to delineate natural attenuation of chlorinated benzenes in anoxic aquifers.

    PubMed

    Stelzer, Nicole; Imfeld, Gwenaël; Thullner, Martin; Lehmann, Jürgen; Poser, Alexander; Richnow, Hans-H; Nijenhuis, Ivonne

    2009-06-01

    Biodegradation of chlorobenzenes was assessed at an anoxic aquifer by combining hydrogeochemistry and stable isotope analyses. In situ microcosm analysis evidenced microbial assimilation of chlorobenzene (MCB) derived carbon and laboratory investigations asserted mineralization of MCB at low rates. Sequential dehalogenation of chlorinated benzenes may affect the isotope signature of single chlorobenzene species due to simultaneous depletion and enrichment of (13)C, which complicates the evaluation of degradation. Therefore, the compound-specific isotope analysis was interpreted based on an isotope balance. The enrichment of the cumulative isotope composition of all chlorobenzenes indicated in situ biodegradation. Additionally, the relationship between hydrogeochemistry and degradation activity was investigated by principal component analysis underlining variable hydrogeochemical conditions associated with degradation activity at the plume scale. Although the complexity of the field site did not allow straightforward assessment of natural attenuation processes, the application of an integrative approach appeared relevant to characterize the in situ biodegradation potential. PMID:19250727

  4. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics

    PubMed Central

    Burow, Luke C; Woebken, Dagmar; Marshall, Ian PG; Lindquist, Erika A; Bebout, Brad M; Prufert-Bebout, Leslie; Hoehler, Tori M; Tringe, Susannah G; Pett-Ridge, Jennifer; Weber, Peter K; Spormann, Alfred M; Singer, Steven W

    2013-01-01

    Photosynthetic microbial mats possess extraordinary phylogenetic and functional diversity that makes linking specific pathways with individual microbial populations a daunting task. Close metabolic and spatial relationships between Cyanobacteria and Chloroflexi have previously been observed in diverse microbial mats. Here, we report that an expressed metabolic pathway for the anoxic catabolism of photosynthate involving Cyanobacteria and Chloroflexi in microbial mats can be reconstructed through metatranscriptomic sequencing of mats collected at Elkhorn Slough, Monterey Bay, CA, USA. In this reconstruction, Microcoleus spp., the most abundant cyanobacterial group in the mats, ferment photosynthate to organic acids, CO2 and H2 through multiple pathways, and an uncultivated lineage of the Chloroflexi take up these organic acids to store carbon as polyhydroxyalkanoates. The metabolic reconstruction is consistent with metabolite measurements and single cell microbial imaging with fluorescence in situ hybridization and NanoSIMS. PMID:23190731

  5. Calcareous Nannoplankton Response to Surface-Water Acidification Around Oceanic Anoxic Event 1a

    NASA Astrophysics Data System (ADS)

    Erba, Elisabetta; Bottini, Cinzia; Weissert, Helmut J.; Keller, Christina E.

    2010-07-01

    Ocean acidification induced by atmospheric CO2 may be a major threat to marine ecosystems, particularly to calcareous nannoplankton. We show that, during the Aptian (~120 million years ago) Oceanic Anoxic Event 1a, which resulted from a massive addition of volcanic CO2, the morphological features of calcareous nannofossils traced the biological response to acidified surface waters. We observe the demise of heavily calcified nannoconids and reduced calcite paleofluxes at the beginning of a pre-anoxia calcification crisis. Ephemeral coccolith dwarfism and malformation represent species-specific adjustments to survive lower pH, whereas later, abundance peaks indicate intermittent alkalinity recovery. Deepwater acidification occurred with a delay of 25,000 to 30,000 years. After the dissolution climax, nannoplankton and carbonate recovery developed over ~160,000 years under persisting global dysoxia-anoxia.

  6. Methane production from bicarbonate and acetate in an anoxic marine sediment

    NASA Technical Reports Server (NTRS)

    Crill, P. M.; Martens, C. S.

    1986-01-01

    Methane production from C-14 labeled bicarbonate and acetate was measured over the top 28 cm of anoxic Cape Lookout Bight sediments during the summer of 1983. The depth distribution and magnitude of summed radioisotopically determined rates compare well with previous measurements of total methane production and the sediment-water methane flux. Methane production from CO2 reduction and acetate fermentation accounts for greater than 80 percent of the total production rate and sediment-water flux. Methane production from bicarbonate was found to occur in all depth intervals sampled except those in the top 2 cm, whereas significant methane production from acetate only occurred at depths below 10 cm where sulfate was exhausted. Acetate provided 20 to 29 percent of the measured methane production integrated over the top 30 cm of the sediments.

  7. Optimization of the activated sludge anoxic reactor configuration as a means to control nutrient removal kinetically.

    PubMed

    Plósz, Benedek Gy

    2007-04-01

    Factors influencing the determination of optimum reactor configuration for activated sludge denitrification are investigated in this paper. A kinetic optimization method is presented to evaluate optimal pre- and post-denitrification bioreactor stages. Applying the method developed, simulation studies were carried out to investigate the impacts of the ratio of the influent readily biodegradable and slowly biodegradable substrates and the oxygen entering the denitrification zones on the optimal anoxic reactor configuration. In addition, the paper describes the effects of the slowly biodegradable substrate on the denitrification efficiency using external substrate dosing, and it demonstrates kinetic considerations concerning the hydrolysis process. It has been shown that as a function of the biodegradable substrate composition, the stage system design with three optimized reactor compartments can effectively increase reaction rates in the denitrification zones, and can provide flexibility for varying operation conditions. PMID:17321565

  8. The carbon isotope biogeochemistry of methane production in anoxic sediments. 1: Field observations

    NASA Technical Reports Server (NTRS)

    Blair, Neal E.; Boehme, Susan E.; Carter, W. Dale, Jr.

    1993-01-01

    The natural abundance C-13/C-12 ratio of methane from anoxic marine and freshwater sediments in temperate climates varies seasonally. Carbon isotopic measurements of the methanogenic precursors, acetate and dissolved inorganic carbon, from the marine sediments of Cape Lookout Bight, North Carolina were used to determine the sources of the seasonal variations at that site. Movement of the methanogenic zone over an isotopic gradient within the dissolved CO2 pool appears to be the dominant control of the methane C-13/C-12 ratio from February to June. The onset of acetoclastic methane-production is a second important controlling process during mid-summer. An apparent temperature dependence on the fractionation factor for CO2-reduction may have a significant influence on the isotopic composition of methane throughout the year.

  9. Characteristics of Biological Nitrogen Removal in a Multiple Anoxic and Aerobic Biological Nutrient Removal Process

    PubMed Central

    Wang, Huoqing; Guan, Yuntao; Li, Li; Wu, Guangxue

    2015-01-01

    Two sequencing batch reactors, one with the conventional anoxic and aerobic (AO) process and the other with the multiple AO process, were operated to examine characteristics of biological nitrogen removal, especially of the multiple AO process. The long-term operation showed that the total nitrogen removal percentage of the multiple AO reactor was 38.7% higher than that of the AO reactor. In the multiple AO reactor, at the initial SBR cycle stage, due to the occurrence of simultaneous nitrification and denitrification, no nitrite and/or nitrate were accumulated. In the multiple AO reactor, activities of nitrite oxidizing bacteria were inhibited due to the multiple AO operating mode applied, resulting in the partial nitrification. Denitrifiers in the multiple AO reactor mainly utilized internal organic carbon for denitrification, and their activities were lower than those of denitrifiers in the AO reactor utilizing external organic carbon. PMID:26491676

  10. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

    PubMed

    Burow, Luke C; Woebken, Dagmar; Marshall, Ian P G; Lindquist, Erika A; Bebout, Brad M; Prufert-Bebout, Leslie; Hoehler, Tori M; Tringe, Susannah G; Pett-Ridge, Jennifer; Weber, Peter K; Spormann, Alfred M; Singer, Steven W

    2013-04-01

    Photosynthetic microbial mats possess extraordinary phylogenetic and functional diversity that makes linking specific pathways with individual microbial populations a daunting task. Close metabolic and spatial relationships between Cyanobacteria and Chloroflexi have previously been observed in diverse microbial mats. Here, we report that an expressed metabolic pathway for the anoxic catabolism of photosynthate involving Cyanobacteria and Chloroflexi in microbial mats can be reconstructed through metatranscriptomic sequencing of mats collected at Elkhorn Slough, Monterey Bay, CA, USA. In this reconstruction, Microcoleus spp., the most abundant cyanobacterial group in the mats, ferment photosynthate to organic acids, CO2 and H2 through multiple pathways, and an uncultivated lineage of the Chloroflexi take up these organic acids to store carbon as polyhydroxyalkanoates. The metabolic reconstruction is consistent with metabolite measurements and single cell microbial imaging with fluorescence in situ hybridization and NanoSIMS. PMID:23190731

  11. Six years' practical experience with aerobic/anoxic deammonification in biofilm systems.

    PubMed

    Hippen, A; Helmer, C; Kunst, S; Rosenwinkel, K H; Seyfried, C F

    2001-01-01

    Nitrogen elimination through autotrophic micro-organisms is currently in the focus of research projects on the treatment of wastewater with high nitrogen contents, for instance to be able to develop and fix dimensioning parameters for purposeful application. In fact, several industrial plants have already shown for some years that the steady operation of nitrogen elimination without carbon demand is possible. Due to the low growth rates of the participating micro-organisms, these processes can be found in particular in biofilm systems, which also allow for the simultaneous running of the two basic processes. In the following, we will discuss on the basis of the operation results of industrial and pilot-scale plants the operation stability of the aerobic/anoxic deammonification, and explain which experiences are available in particular for conversion in biofilm systems. PMID:11548011

  12. Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone

    PubMed Central

    Astorga-Eló, Marcia; Ramírez-Flandes, Salvador; DeLong, Edward F; Ulloa, Osvaldo

    2015-01-01

    Cyanobacteria of the genus Prochlorococcus are the most abundant photosynthetic marine organisms and key factors in the global carbon cycle. The understanding of their distribution and ecological importance in oligotrophic tropical and subtropical waters, and their differentiation into distinct ecotypes, is based on genetic and physiological information from several isolates. Currently, all available Prochlorococcus genomes show their incapacity for nitrate utilization. However, environmental sequence data suggest that some uncultivated lineages may have acquired this capacity. Here we report that uncultivated low-light-adapted Prochlorococcus from the nutrient-rich, low-light, anoxic marine zone (AMZ) of the eastern tropical South Pacific have the genetic potential for nitrate uptake and assimilation. All genes involved in this trait were found syntenic with those present in marine Synechococcus. Genomic and phylogenetic analyses also suggest that these genes have not been aquired recently, but perhaps were retained from a common ancestor, highlighting the basal characteristics of the AMZ lineages within Prochlorococcus. PMID:25700337

  13. Reduction of Biological Sludge Production Applying an Alternating Oxic/anoxic Process in Water Line.

    PubMed

    Eusebi, Anna Laura; Panigutti, Maximiliano; Battistoni, Paolo

    2016-06-01

    Alternating oxic/anoxic process, applied for the main objective of the improvement of nitrogen performances, was studied in terms of secondary effect of biomass reduction. The process was carried out in one real water resource recovery facility and the data were compared with the previous conventional period when a conventional process was adopted. The main mechanism of the process for the sludge minimization is recognized in the metabolic uncoupling. In fact, an increase of the specific oxygen uptake rate in the biological reactor was recorded stimulated by the change of the oxidation reduction potential environment. Moreover, the heterotrophic growth yield was measured equal to 0.385 kgVSS/kgCOD. The global percentage of reduction was tested with the mass balance of solids. The process is able to decrease the observed sludge yield up to 20%. The specific energy consumption was evaluated. PMID:27225780

  14. Anoxic photochemical oxidation of siderite generates molecular hydrogen and iron oxides

    PubMed Central

    Kim, J. Dongun; Yee, Nathan; Nanda, Vikas; Falkowski, Paul G.

    2013-01-01

    Photochemical reactions of minerals are underappreciated processes that can make or break chemical bonds. We report the photooxidation of siderite (FeCO3) by UV radiation to produce hydrogen gas and iron oxides via a two-photon reaction. The calculated quantum yield for the reaction suggests photooxidation of siderite would have been a significant source of molecular hydrogen for the first half of Earth’s history. Further, experimental results indicate this abiotic, photochemical process may have led to the formation of iron oxides under anoxic conditions. The reaction would have continued through the Archean to at least the early phases of the Great Oxidation Event, and provided a mechanism for oxidizing the atmosphere through the loss of hydrogen to space, while simultaneously providing a key reductant for microbial metabolism. We propose that the photochemistry of Earth-abundant minerals with wide band gaps would have potentially played a critical role in shaping the biogeochemical evolution of early Earth. PMID:23733945

  15. Superparamagnetic Fe3O4 particles formed by oxidation of pyrite heated in an anoxic atmosphere

    USGS Publications Warehouse

    Thorpe, A.N.; Senftle, F.E.; Talley, R.; Hetherington, S.; Dulong, F.

    1990-01-01

    As a follow-up to previous gas analysis experiments in which pyrite was heated to 681 K in an anoxic (oxygen starved) atmosphere, the first oxidation product, FeSO4, was studied as a bulk material. No decomposition of FeSO4 to Fe3O4 was observed in the temperature range studied. The lack of decomposition of bulk FeSO4 to Fe3O4 suggests that FeS2 oxidizes directly to Fe3O4, or that FeSO4, FeS2 and O2 react together to form Fe3O4. Magnetic susceptibility and magnetization measurements, along with magnetic hysteresis curves, show that small particles of Fe3O4 form on the pyrite surface, rather than a continuous layer of bulk Fe3O4. A working model describing the oxidation steps is presented. ?? 1990.

  16. Evidence for Global Biogeochemical Changes During the Toarcian Oceanic Anoxic Event

    NASA Astrophysics Data System (ADS)

    Them, T. R., II; Gill, B. C.; Gröcke, D. R.; Selby, D. S.; Martindale, R. C.; Caruthers, A. H.; Tulsky, E. T. T.

    2015-12-01

    The global versus regional nature of the Toarcian Oceanic Anoxic Event (T-OAE; ~183 million years ago) has been heavily debated over the course of the last decade. Several lines of geochemical evidence support a significant perturbation to the carbon cycle and redox-sensitive elemental cycles across this interval. It is thought that these represent feedbacks to the emplacement of the Karoo-Ferrar large igneous province. These include: elevated atmospheric pCO2, an enhanced greenhouse effect and hydrologic cycle leading to increased weathering rates, dissociation of biogenic methane clathrates, and widespread ocean anoxia. Despite evidence for these global phenomena, the overwhelming majority of stratigraphic successions studied are located in Europe. The global magnitude of these biogeochemical perturbations has been challenged, with some considering that this event was regional to Europe, and others suggesting that the carbon isotope excursion (CIE) itself is not a reliable stratigraphic marker. In order to test these competing hypotheses, we have generated a geochemical dataset to reconstruct paleoceanographic and paleoclimatological changes across the T-OAE from western North America. The Toarcian strata in western Alberta consist primarily of organic-rich calcareous siltstones and shales. These deposits represent ideal sedimentary facies to reconstruct environmental changes through the use of geochemical proxy data, especially those that use redox-sensitive transition metals. Ammonite biostratigraphy suggests a nearly continuous sequence from the late Pliensbachian to middle Toarcian. The organic carbon isotopes show the prominent negative CIE interpreted to relate to the release of isotopically depleted carbon at the onset of the T-OAE. Pyrite sulfur weight percentages increase across the CIE and remain elevated, and iron speciation data suggest the development of anoxic conditions. Initial osmium isotope compositions become more radiogenic during the CIE

  17. Sulfur isotopes track the global extent and dynamics of euxinia during Cretaceous Oceanic Anoxic Event 2

    PubMed Central

    Owens, Jeremy D.; Gill, Benjamin C.; Jenkyns, Hugh C.; Bates, Steven M.; Severmann, Silke; Kuypers, Marcel M. M.; Woodfine, Richard G.; Lyons, Timothy W.

    2013-01-01

    The Mesozoic Era is characterized by numerous oceanic anoxic events (OAEs) that are diagnostically expressed by widespread marine organic-carbon burial and coeval carbon-isotope excursions. Here we present coupled high-resolution carbon- and sulfur-isotope data from four European OAE 2 sections spanning the Cenomanian–Turonian boundary that show roughly parallel positive excursions. Significantly, however, the interval of peak magnitude for carbon isotopes precedes that of sulfur isotopes with an estimated offset of a few hundred thousand years. Based on geochemical box modeling of organic-carbon and pyrite burial, the sulfur-isotope excursion can be generated by transiently increasing the marine burial rate of pyrite precipitated under euxinic (i.e., anoxic and sulfidic) water-column conditions. To replicate the observed isotopic offset, the model requires that enhanced levels of organic-carbon and pyrite burial continued a few hundred thousand years after peak organic-carbon burial, but that their isotope records responded differently due to dramatically different residence times for dissolved inorganic carbon and sulfate in seawater. The significant inference is that euxinia persisted post-OAE, but with its global extent dwindling over this time period. The model further suggests that only ∼5% of the global seafloor area was overlain by euxinic bottom waters during OAE 2. Although this figure is ∼30× greater than the small euxinic fraction present today (∼0.15%), the result challenges previous suggestions that one of the best-documented OAEs was defined by globally pervasive euxinic deep waters. Our results place important controls instead on local conditions and point to the difficulty in sustaining whole-ocean euxinia. PMID:24170863

  18. Obliquity forcing of organic matter accumulation during Oceanic Anoxic Event 2

    NASA Astrophysics Data System (ADS)

    Meyers, Stephen R.; Sageman, Bradley B.; Arthur, Michael A.

    2012-09-01

    An analysis of orbitally influenced climate-sensitive sedimentation is conducted across a meridional transect of the proto-North Atlantic, to reconstruct the behavior of the carbon cycle and climate during Oceanic Anoxic Event 2 (OAE 2; ˜94 Ma). Midlatitude to near equatorial sites spanning deep-ocean to shelf environments are evaluated using a new inverse method for the identification and calibration of orbital influence in ancient strata. The results yield consistent independent astrochronologies at each location—compatible with the recently published radioisotopic/astrochronologic time scale at the Cenomanian-Turonian GSSP—and thus provide a unified high-resolution temporal context for evaluation of the event. The proto-North Atlantic astrochronologies document an amplification of obliquity power during OAE 2, indicating that obliquity was the dominant pacemaker of organic matter accumulation by the latter portion of the event. The strong obliquity signal suggests an influence of high-latitude climate processes across midlatitude deep-ocean to tropical shelf environments. Changes in oceanic circulation during OAE 2 represent a likely mechanism for the propagation of a high latitude signal, and proxy data from Demerara Rise reveal the development of a new intermediate water mass source synchronous with the record of obliquity amplification. We hypothesize that a dense high-latitude water mass displaced a pre-existing nutrient-rich anoxic deep-water layer in the proto-North Atlantic (augmented by enhanced volcanism), driving an episode of high productivity that lasted 700-800 ka. The development and intensification of the new intermediate/deep water source was potentially driven by eustatic sea level rise, which created expansive seaways in mid to high latitudes.

  19. Effect of temperature on anoxic metabolism of nitrites to nitrous oxide by polyphosphate accumulating organisms.

    PubMed

    Miao, Zhijia; Zeng, Wei; Wang, Shuying; Peng, Yongzhen; Cao, Guihua; Weng, Dongchen; Xue, Guisong; Yang, Qing

    2014-02-01

    Temperature is an important physical factor, which strongly influences biomass and metabolic activity. In this study, the effects of temperature on the anoxic metabolism of nitrite (NO2(-)) to nitrous oxide (N2O) by polyphosphate accumulating organisms, and the process of the accumulation of N2O (during nitrite reduction), which acts as an electron acceptor, were investigated using 91% +/- 4% Candidatus Accumulibacter phosphatis sludge. The results showed that N2O is accumulated when Accumulibacter first utilize nitrite instead of oxygen as the sole electron acceptor during the denitrifying phosphorus removal process. Properties such as nitrite reduction rate, phosphorus uptake rate, N2O reduction rate, and polyhydroxyalkanoate degradation rate were all influenced by temperature variation (over the range from 10 to 30 degrees C reaching maximum values at 25 degrees C). The reduction rate of N2O by N2O reductase was more sensitive to temperature when N2O was utilized as the sole electron acceptor instead of N2O, and the N2O reduction rates, ranging from 0.48 to 3.53 N20-N/(hr x g VSS), increased to 1.45 to 8.60 mg N2O-N/(hr x g VSS). The kinetics processes for temperature variation of 10 to 30 degrees C were (theta1 = 1.140-1.216 and theta2 = 1.139-1.167). In the range of 10 degrees C to 30 degrees C, almost all of the anoxic stoichiometry was sensitive to temperature changes. In addition, a rise in N2O reduction activity leading to a decrease in N2O accumulation in long term operations at the optimal temperature (27 degrees C calculated by the Arrhenius model). PMID:25076517

  20. Sulfur isotopes track the global extent and dynamics of euxinia during Cretaceous Oceanic Anoxic Event 2.

    PubMed

    Owens, Jeremy D; Gill, Benjamin C; Jenkyns, Hugh C; Bates, Steven M; Severmann, Silke; Kuypers, Marcel M M; Woodfine, Richard G; Lyons, Timothy W

    2013-11-12

    The Mesozoic Era is characterized by numerous oceanic anoxic events (OAEs) that are diagnostically expressed by widespread marine organic-carbon burial and coeval carbon-isotope excursions. Here we present coupled high-resolution carbon- and sulfur-isotope data from four European OAE 2 sections spanning the Cenomanian-Turonian boundary that show roughly parallel positive excursions. Significantly, however, the interval of peak magnitude for carbon isotopes precedes that of sulfur isotopes with an estimated offset of a few hundred thousand years. Based on geochemical box modeling of organic-carbon and pyrite burial, the sulfur-isotope excursion can be generated by transiently increasing the marine burial rate of pyrite precipitated under euxinic (i.e., anoxic and sulfidic) water-column conditions. To replicate the observed isotopic offset, the model requires that enhanced levels of organic-carbon and pyrite burial continued a few hundred thousand years after peak organic-carbon burial, but that their isotope records responded differently due to dramatically different residence times for dissolved inorganic carbon and sulfate in seawater. The significant inference is that euxinia persisted post-OAE, but with its global extent dwindling over this time period. The model further suggests that only ~5% of the global seafloor area was overlain by euxinic bottom waters during OAE 2. Although this figure is ~30× greater than the small euxinic fraction present today (~0.15%), the result challenges previous suggestions that one of the best-documented OAEs was defined by globally pervasive euxinic deep waters. Our results place important controls instead on local conditions and point to the difficulty in sustaining whole-ocean euxinia. PMID:24170863

  1. Effect of Cretaceous oceanic anoxic events on the evolutionary trend of planktonic foraminifera

    NASA Astrophysics Data System (ADS)

    Kuroyanagi, A.; Ozaki, K.; Kawahata, H.

    2014-12-01

    It is widely thought that oceanic redox state is essential for the evolutionary history of life on the earth, and "anoxic events" have been proposed as one of the causal mechanisms for mass extinctions. During mid-Cretaceous, widely known as the extremely warm period, oceanic anoxic events (OAEs) occurred several times and they would have caused a substantial impact on the biosphere. Planktonic foraminifera are marine planktons with calcite tests and their productions constitute ~30-80% of the modern deep-marine calcite budget, thus they play an important role in the global carbon cycle. Previous study reported that planktonic foraminifera displayed the high turnover (extinction and speciation) rate at or near the major OAEs. However, the impact of Cretaceous OAEs on the evolutionary trend of planktonic foraminifera remains obscure. In this study, we investigated the role of spatiotemporal extent of anoxia on the evolutionary trend of planktonic foraminifera by assessing the extinction/speciation rate of planktonic foraminifera around Cretaceous OAEs. The number of foraminiferal species increased across the OAE1a and then showed a peak after this episode. Around OAE2, several planktonic foraminifera species became extinct and several speciated, however, long-term trends in foraminiferal evolution showed no drastic changes near the event. Therefore these results suggest that the ocean surface environment at OAEs would not have a direct effect on foraminiferal extinction/speciation. This interpretation is reinforced when considering the recent culturing results, which demonstrate that modern planktonic foraminifera have a high tolerance to extremely low dissolved oxygen levels than expected. Accumulating geochemical data also suggest a spatial heterogeneity of oceanic anoxia/euxinia during OAE2. These results lead us to conclude that Cretaceous OAEs would not directly related to planktonic foraminiferal extinction due to regional distribution of anoxia/euxinia.

  2. Timing and evolution of ocean anoxic event during Early Cambrian in south China

    NASA Astrophysics Data System (ADS)

    Yang, J.; Jiang, S.; Pi, D.; Ling, H.

    2008-12-01

    The Precambrian/Cambrian (PC-C) interval is one of the most interesting intervals in the evolution of life because of the sudden diversification of animals with mineralized skeletons, known as "Cambrian Explosion". The Yangtze Platform in south China is one of the best occurrences that can provide excellent insights into the palaeo-environmental and biological changes across the PC-C boundary. Our study show that the ocean anoxia were widespread during the Early Cambrian period, however, the start of this anoxic event was not from the PC-C boundary (i.e., 542 Ma), but some 7 Ma later (~535 Ma) when the Niutitang Formation black rock series (black phosphorite, chert, and black shale) deposited along a thousand kilometer long NEE zone in the transitional facies in the Yangtze Platform, while the major Cambrian radiation (Changjiang fauna) took place during 521-511 Ma. During the Niutitang period, the depositional environment of the Early Cambrian sedimentary sequence in south China have evolved from an initial oxic/dysoxic to a major anoxic/euxinic environment, and then back to dysoxic/oxic environment. A Ni-Mo sulfide layer occurred in the lower part of the Niutitang black shales which contains extremely enrichments of many metals, and can serve as a marker layer in south China when the depositional environment turned into euxinic condition. Re-Os isotope study of the sulfide ores and host black shales show an age of 535 Ma. Initial Os isotopic compositions, Mo isotopic compositions, and rare earth elements and Pt group element geochemistry suggest involvement of submarine hydrothermal fluids during the metal enrichments in black shale.

  3. Anoxic Androgen Degradation by the Denitrifying Bacterium Sterolibacterium denitrificans via the 2,3-seco Pathway

    PubMed Central

    Wang, Po-Hsiang; Yu, Chang-Ping; Lee, Tzong-Huei; Lin, Ching-Wen; Ismail, Wael; Wey, Shiaw-Pyng; Kuo, An-Ti

    2014-01-01

    The biodegradation of steroids is a crucial biochemical process mediated exclusively by bacteria. So far, information concerning the anoxic catabolic pathways of androgens is largely unknown, which has prevented many environmental investigations. In this work, we show that Sterolibacterium denitrificans DSMZ 13999 can anaerobically mineralize testosterone and some C19 androgens. By using a 13C-metabolomics approach and monitoring the sequential appearance of the intermediates, we demonstrated that S. denitrificans uses the 2,3-seco pathway to degrade testosterone under anoxic conditions. Furthermore, based on the identification of a C17 intermediate, we propose that the A-ring cleavage may be followed by the removal of a C2 side chain at C-5 of 17-hydroxy-1-oxo-2,3-seco-androstan-3-oic acid (the A-ring cleavage product) via retro-aldol reaction. The androgenic activities of the bacterial culture and the identified intermediates were assessed using the lacZ-based yeast androgen assay. The androgenic activity in the testosterone-grown S. denitrificans culture decreased significantly over time, indicating its ability to eliminate androgens. The A-ring cleavage intermediate (≤500 μM) did not exhibit androgenic activity, whereas the sterane-containing intermediates did. So far, only two androgen-degrading anaerobes (Sterolibacterium denitrificans DSMZ 13999 [a betaproteobacterium] and Steroidobacter denitrificans DSMZ 18526 [a gammaproteobacterium]) have been isolated and characterized, and both of them use the 2,3-seco pathway to anaerobically degrade androgens. The key intermediate 2,3-seco-androstan-3-oic acid can be used as a signature intermediate for culture-independent environmental investigations of anaerobic degradation of C19 androgens. PMID:24657867

  4. Characterization of microbial arsenate reduction in the anoxic bottom waters of Mono Lake, California

    USGS Publications Warehouse

    Hoeft, S.E.; Lucas, F.; Hollibaugh, J.T.; Oremland, R.S.

    2002-01-01

    Dissimilatory reduction of arsenate (DAsR) occurs in the arsenic-rich, anoxic water column of Mono Lake, California, yet the microorganisms responsible for this observed in situ activity have not been identified. To gain insight as to which microorganisms mediate this phenomenon, as well as to some of the biogeochemical constraints on this activity, we conducted incubations of arsenate-enriched bottom water coupled with inhibition/amendment studies and Denaturing Gradient Gel Electrophoresis (DGGE) characterization techniques. DAsR was totally inhibited by filter-sterilization and by nitrate, partially inhibited (~50%) by selenate, but only slightly (~25%) inhibited by oxyanions that block sulfate-reduction (molybdate and tungstate). The apparent inhibition by nitrate, however, was not due to action as a preferred electron acceptor to arsenate. Rather, nitrate addition caused a rapid, microbial re-oxidation of arsenite to arsenate, which gave the overall appearance of no arsenate loss. A similar microbial oxidation of As(III) was also found with Fe(III), a fact that has implications for the recycling of As(V) in Mono Lake's anoxic bottom waters. DAsR could be slightly (10%) stimulated by substrate amendments of lactate, succinate, malate, or glucose, but not by acetate, suggesting that the DAsR microflora is not electron donor limited. DGGE analysis of amplified 16S rDNA gene fragments from incubated arsenate-enriched bottom waters revealed the presence of two bands that were not present in controls without added arsenate. The resolved sequences of these excised bands indicated the presence of members of the epsilon (Sulfurospirillum) and delta (Desulfovibrio) subgroups of the Proteobacteria, both of which have representative species that are capable of anaerobic growth using arsenate as their electron acceptor.

  5. Assessing the Record of Anoxic/Dysoxic Events in Lower Aptian Cupido/La Peña Formations, Northeastern Mexico

    NASA Astrophysics Data System (ADS)

    Maurrasse, F. J.; Barragan-Manzo, R.; Ponton, C.

    2008-05-01

    Lower Aptian series at the la Huasteca Canyon, Nuevo Leon, NE Mexico, include the uppermost part of the Cupido Formation, a shallow-platform facies (TIC > 60%) succeeded by the La Peña Formation (TIC very variable 17 - 92 %). The change indicated a long-term shift in sedimentation characterized by distinct periodic increase in terrigenous, organic matter and abundant occurrence of ammonites. The interbeds of marls, calcareous shales, marly calcilutites and calcirudites of the La Peña facies contain abundant thin-shelled ammonites, and few planktonic foraminifera. The change occurred in the Dufrenoya justinae ammonite Zone, coeval with the Dufrenoya furcata Zone of the standard ammonite biochronostratigraphy of the Mediterranean province for the uppermost Early Aptian (Barragan-Manzo and Mendez-Franco, 2005; Barragan and Maurrasse, 2008). These zones differentiate the upper part of the Lower Aptian, therefore posterior to OAE1a. Nonetheless, while microfacies of the La Peña Fm show also intermittent belemnites, small pelecypods other than rudists, and sea urchins, benthic foraminifera are mostly absent occurring toward younger levels in the Gargasian coincident with highest taxonomic diversity. Benthic foraminifers are conspicuously absent particularly at the levels closest to the transition zone with the infrajacent Cupido facies. Also, despite increase in TOC (up to 2.6 %) in the La Peña facies, ∂13 Corg curve shows little co-variation with increasing OM, which we interpret to represent a regional phenomenon related to super-productivity in the isolated sub-basin of the Mexican platform (Maurrasse et al., 2006). In contrast, typical Cupido Fm microfacies exhibit abundant miliolids (20-30 %), fragments of rudists, echinoids, ostracods (> 30-40%), very few thin ammonite shell debris, and oolites at intermittent levels. Rich benthic foraminifer assemblages are indicative of well-oxygenated bottom conditions. However, there are three horizons about 60 cm

  6. Simultaneous organic carbon and nitrogen removal in an anoxic-oxic activated sludge system under various operating conditions.

    PubMed

    Rasool, Kashif; Ahn, Dae Hee; Lee, Dae Sung

    2014-06-01

    This study investigated a bench-scale anoxic-oxic activated sludge system for integrated removal of COD and nitrogen. The experimental unit includes four chambers and continuous feeding in first chamber without recycle of nitrified liquid from aerobic to anoxic chamber unlike the conventional anoxic-oxic process. Recycled excessive sludge was used for the purpose of recycling nitrified mixed liquor. Synthetic wastewater with average loading rates of 0.53 kg COD/m(3)/d and 0.067 kg NH4(+)-N/m(3)/d was fed to the reactor system at hydraulic residence times (HRT) of 24 and 18 h. The results of 100 days operation showed high removal efficiencies of organic matter of about 97% as total COD and more than 99% removal of ammonia-nitrogen. In anoxic-oxic operation phase, total inorganic nitrogen (TIN) removal was about 66% by pre-denitrification. Moreover, the solid liquid separation through final clarifier was excellent without any suspended solid in the effluent. PMID:24768910

  7. Elucidating the removal mechanism of N,N-dimethyldithiocarbamate in an anaerobic-anoxic-oxic activated sludge system.

    PubMed

    Li, Yongmei; Cao, Xianzhong; Wang, Lin

    2014-03-01

    N,N-Dimethyldithiocarbamate (DMDTC) is a typical precursor of N-nitrosodimethylamine (NDMA). Based on separate hydrolysis, sorption and biodegradation studies of DMDTC, a laboratory-scale anaerobic-anoxic-oxic (AAO) system was established to investigate the removal mechanism of DMDTC in this nutrient removal biological treatment system. DMDTC hydrolyzed easily in water solution under either acidic conditions or strong alkaline conditions, and dimethylamine (DMA) was the main hydrolysate. Under anaerobic, anoxic or oxic conditions, DMDTC was biodegraded and completely mineralized. Furthermore, DMA was the main intermediate in DMDTC biodegradation. In the AAO system, the optimal conditions for both nutrient and DMDTC removal were hydraulic retention time 8 hr, sludge retention time 20 day, mixed-liquor return ratio 3:1 and sludge return ratio 1:1. Under these conditions, the removal efficiency of DMDTC reached 99.5%; the removal efficiencies of chemical organic demand, ammonium nitrogen, total nitrogen and total phosphorus were 90%, 98%, 81% and 93%, respectively. Biodegradation is the dominant mechanism for DMDTC removal in the AAO system, which was elucidated as consisting of two steps: first, DMDTC is transformed to DMA in the anaerobic and anoxic units, and then DMA is mineralized to CO2 and NH3 in the anoxic and oxic units. The mineralization of DMDTC in the biological treatment system can effectively avoid the formation of NDMA during subsequent disinfection processes. PMID:25079269

  8. Application of nitrate to enhance biodegradation of gasoline components in soil by indigenous microorganisms under anoxic condition.

    PubMed

    Yang, Su-Cai; Song, Yun; Wang, Dong; Wei, Wen-Xia; Yang, Yan; Men, Bin; Li, Jia-Bin

    2016-01-01

    Anaerobic/anoxic biodegradation of hydrocarbons offers an attractive approach to the removal of these compounds from polluted environments such as aquifers, aquatic sediments, submerged soils and subsurface soils. The application of nitrate was investigated to accelerate the degradation of gasoline components such as mono-aromatic hydrocarbons and total petroleum hydrocarbons (TPH) in soil by indigenous microorganisms under anoxic condition. The addition of nitrate had little effect on the degradation of mono-aromatic hydrocarbons m- & p-xylene, o-xylene, sec-butylbenzene and 1,2,4-trimethylbenzene, but facilitated the degradation of TPH (C6-C12) and mono-aromatic hydrocarbons toluene and ethylbenzene markedly. Furthermore, the more nitrate added, the higher the percentage of toluene, ethylbenzene and TPH (C6-C12) degraded after 180 days of anoxic incubation. Microorganisms capable of degrading toluene, ethylbenzene and TPH (C6-C12) with nitrate as the electron acceptor under anaerobic/anoxic condition are composed predominantly of Alpha-, Beta-, Gamma- or Delta-proteobacteria. Beta- and Gamma-proteobacteria were the main components of indigenous microorganisms, and accounted for 83-100% of the total amount of indigenous microorganisms in soil used in this study. Furthermore, the total amount of indigenous microorganisms increased with nitrate added. The addition of nitrate stimulated the growth of indigenous microorganisms, and therefore facilitated the degradation of toluene, ethylbenzene and TPH (C6-C12). PMID:26508265

  9. Fermentation metabolism in roots of wheat seedlings after hypoxic pre-treatment in different anoxic incubation systems.

    PubMed

    Mustroph, Angelika; Albrecht, Gerd

    2007-04-01

    A hypoxic pre-treatment (HPT) can improve the anoxic survival of flooding sensitive plants. Here, we tested whether a 4-d HPT of wheat plants (Triticum aestivum L.) would improve their anoxic resistance, and if so, why. We found that the metabolic adjustment during prolonged HPT involved an increased lactate excretion rate, the up-regulation of glycolytic and fermentative enzymes as well as the accumulation of various sugars. Therefore, HPT wheat roots could sustain a 3 times higher ethanolic fermentation rate during an anoxic period compared to non-pre-treated (NHPT) roots. Nevertheless, the enhanced fermentation rate provided temporary relief to the energy crisis only, and both NHPT and HPT plants died after 5d of anoxia in illumination. Comparison of different low oxygen incubation systems using excised roots or roots of intact plants revealed striking differences. The benefits of intact shoots, oxygen transport as well as additional sugar supply enabled a more stable energy supply of anoxia-treated NHPT and HPT roots. However, the height of the fermentation rate was correlated with a high ATP content during dark anoxic incubation, but not in illumination. PMID:16616971

  10. Treatment of phenolics, aromatic hydrocarbons, and cyanide-bearing wastewater in individual and combined anaerobic, aerobic, and anoxic bioreactors.

    PubMed

    Sharma, Naresh K; Philip, Ligy

    2015-01-01

    Studies were conducted on a mixture of pollutants commonly found in coke oven wastewater (CWW) to evaluate the biodegradation of various pollutants under anaerobic, aerobic, and anoxic conditions. The removal of the pollutants was monitored during individual bioreactor operation and using a combination of bioreactors operating in anaerobic-aerobic-anoxic sequence. While studying the performance of individual reactors, it was observed that cyanide removal (83.3 %) was predominant in the aerobic bioreactor, while much of the chemical oxygen demand (COD) (69 %) was consumed in the anoxic bioreactor. With the addition of cyanide, the COD removal efficiency was affected in all the bioreactors, and several intermediates were detected. While treating synthetic CWW using the combined bioreactor system, the overall COD removal efficiency was 86.79 % at an OLR of 2.4 g COD/L/day and an HRT of 96 h. The removal efficiency of 3,5-xylenol and cyanide, with inlet concentration of 150 and 10 mg/L, was found to be 91.8 and 93.6 % respectively. It was found that the impact of xylenol on the performance of the bioreactors was less than cyanide toxicity. Molecular analysis using T-RFLP revealed the dominance of strictly aerobic, mesophilic proteobacterium, Bosea minatitlanensis, in the aerobic bioreactor. The anoxic bioreactor was dominant with Rhodococcus pyridinivorans, known for its remarkable aromatic decomposing activity, while an unclassified Myxococcales bacterium was identified as the predominant bacterial species in the anaerobic bioreactor. PMID:25267355

  11. Transport and removal of viruses in saturated sand columns under oxic and anoxic conditions--Potential implications for groundwater protection.

    PubMed

    Frohnert, Anne; Apelt, Susann; Klitzke, Sondra; Chorus, Ingrid; Szewzyk, Regine; Selinka, Hans-Christoph

    2014-11-01

    To protect groundwater as a drinking water resource from microbiological contamination, protection zones are installed. While travelling through these zones, concentrations of potential pathogens should decline to levels that pose no risks to human health. Removal of viruses during subsurface passage is influenced by physicochemical conditions, such as oxygen concentration, which also affects virus survival. The aim of our study was to evaluate the effect of redox conditions on the removal of viruses during sand filtration. Experiments in glass columns filled with medium-grained sand were conducted to investigate virus removal in the presence and absence of dissolved oxygen. Bacteriophages MS2 and PhiX174, as surrogates for human enteric viruses were spiked in pulsed or in continuous mode and pumped through the columns at a filter velocity of about 1m/d. Virus breakthrough curves were analyzed by calculating total viral elimination and fitted using one-dimensional transport models (CXTFIT and HYDRUS-1D). While short-term experiments with pulsed virus application showed only small differences with regard to virus removal under oxic and anoxic conditions, a long-term experiment with continuous dosing revealed a clearly lower elimination of viruses under anoxic conditions. These findings suggest that less inactivation and less adsorption of viruses in anoxic environments affect their removal. Therefore, in risk assessment studies aimed to secure drinking water resources from viral contamination and optimization of protection zones, the oxic and anoxic conditions in the subsurface should also be considered. PMID:25024100

  12. Anoxic phases are the main N2O contributor in partial nitritation reactors treating high nitrogen loads with alternate aeration.

    PubMed

    Gabarró, J; González-Cárcamo, P; Ruscalleda, M; Ganigué, R; Gich, F; Balaguer, M D; Colprim, J

    2014-07-01

    Partial nitritation (PN) reactors treating complex industrial wastewater can be operated by alternating anoxic-aerobic phases to promote heterotrophic denitrification via NO2(-). However, denitrification under stringent conditions can lead to high N2O production. In this study, the suitability of including anoxic phases in a PN-SBR treating real industrial wastewater was assessed in terms of process performance and N2O production. The PN-SBR was operated successfully and, when the HCO3(-):NH4(+) molar ratio was adjusted, produced a suitable effluent for a subsequent anammox reactor. 10-20% of the total influent nitrogen was removed. N2O production accounted for 3.6% of the NLR and took place mainly during the anoxic phases (60%). Specific denitrification batch tests demonstrated that, despite the availability of biodegradable COD, NO2(-) denitrification advanced at a faster rate than N2O denitrification, causing high N2O accumulation. Thus, the inclusion of anoxic phases should be avoided in PN reactors treating industrial wastewaters with high nitrogen loads. PMID:24787321

  13. Metabolic profiling of heat or anoxic stress in mouse C2C12 myotubes using multinuclear magnetic resonance spectroscopy.

    PubMed

    Straadt, Ida K; Young, Jette F; Petersen, Bent O; Duus, Jens Ø; Gregersen, Niels; Bross, Peter; Oksbjerg, Niels; Bertram, Hanne C

    2010-06-01

    In the present study, the metabolic effects of heat and anoxic stress in myotubes from the mouse cell line C2C12 were investigated by using a combination of (13)C, (1)H, and (31)P nuclear magnetic resonance (NMR) spectroscopy and enrichment with [(13)C]-glucose. Both the (13)C and the (1)H NMR spectra showed reduced levels of the amino acids alanine, glutamate, and aspartate after heat or anoxic stress. The decreases were smallest at 42 degrees C, larger at 45 degrees C, and most pronounced after anoxic conditions. In addition, in both the (1)H and the (31)P NMR spectra, decreases in the high-energy phosphate compounds adenosine triphosphate and phosphocreatine with increasing severity of stress were identified. At anoxic conditions, an increase in (13)C-labeled lactate and appearance of glycerol-3-phosphate were observed. Accumulation of lactate and glycerol-3-phosphate is in agreement with a shift to anaerobic metabolism due to inhibition of the aerobic pathway in the mitochondria. Conversely, lower levels of unlabeled ((12)C) lactate were apparent at increasing severity of stress, which indicate that lactate is released from the myotubes to the medium. In conclusion, the metabolites identified in the present study may be useful markers for identifying severity of stress in muscles. PMID:20005546

  14. Influence of Anoxia on Nutrient Regeneration During Organic Matter Decomposition in the Orca Basin, Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Werne, J. P.; Booth, C.; Grosshuesch, S.

    2008-12-01

    Controls on N and P regeneration during organic matter (OM) decomposition, particularly the effects of oxygenation, remain a topic of debate. It has alternately been argued that: there is no preferential regeneration of either N or P relative to C under normal marine (i.e., oxic) conditions; N is preferentially released under oscillating redox conditions; and P is preferentially released under anoxic conditions. Upon release, remineralized nutrients can be retained in sediments or can diffuse from sediments, making them available for biological utilization and thereby increasing primary productivity and the potential delivery of OM to the sediments. To address these questions, four sediment cores were taken from the Orca Basin under different depositional regimes, oxic, oscillating, transitional, and anoxic. The Orca Basin is a small, hypersaline, anoxic/sulfidic basin on the northwest slope of the Gulf of Mexico, located 290 km south of the Mississippi delta, thus the only factors that differ between the various cores are redox state and salinity. Cores were analyzed for total organic carbon (TOC), total nitrogen (TN), organic nitrogen (TON), organic C and N isotopes, as well as a phosphorus speciation including organic, oxide-associated, authigenic, and detrital forms of P. Results indicate impacts of the oxygen regime on OM remineralization. C/N ratios indicate no preferential release of N from OM during decay. However, the N released remains sequestered in the sediments as inorganic N, and is not released to bottom waters as effectively under oscillating redox conditions. P is released preferentially from sediments relative to both C and N under anoxic conditions compared to oxic conditions. These results agree with previous studies of sedimentary systems of equivalent or older age, but studies of water column and sediment trap OM remineralization show no preferential release of P under anoxic conditions. Presumably, the timescale of study is important for the

  15. Crude oil in a shallow sand and gravel aquifer-III. Biogeochemical reactions and mass balance modeling in anoxic groundwater

    USGS Publications Warehouse

    Baedecker, M.J.; Cozzarelli, I.M.; Eganhouse, R.P.; Siegel, D.I.; Bennett, P.C.

    1993-01-01

    Crude oil floating on the water table in a sand and gravel aquifer provides a constant source of hydrocarbons to the groundwater at a site near Bemidji, Minnesota. The degradation of hydrocarbons affects the concentrations of oxidized and reduced aqueous species in the anoxic part of the contaminant plume that developed downgradient from the oil body. The concentrations of Fe2+, Mn2+ and CH4, Eh measurements, and the ??13C ratios of the total inorganic C indicate that the plume became more reducing ver a 5-a period. However, the size of the contaminant plume remained stable during this time. Field data coupled with laboratory microcosm experiments indicate that benzene and the alkylbenzenes are degraded in an anoxic environment. In anaerobic microcosm experiments conducted under field conditions, almost complete degradation (98%) was observed for benzene in 125 d and for toluene in 45 d. Concentrations of aqueous Fe2+ and Mn2+ increased in these experiments, indicating that the primary reactions were hydrocarbon degradation coupled with Fe and Mn reduction. Mass transfer calculations on a 40-m flowpath in the anoxic zone, downgradient from the oil body, indicated that the primary reactions in the anoxic zone are oxidation of organic compounds, precipitation of siderite and a ferroan calcite, dissolution of iron oxide and outgassing of CH4 and CO2. The major difference in the two models presented is the ratio of CO2 and CH4 that outgasses. Both models indicate quantitatively that large amounts of Fe are dissolved and reprecipitated as ferrous iron in the anoxic zone of the contaminant plume. ?? 1993.

  16. Metatranscriptomic Analyses of Plankton Communities Inhabiting Surface and Subpycnocline Waters of the Chesapeake Bay during Oxic-Anoxic-Oxic Transitions

    PubMed Central

    Eggleston, Erin M.; Doherty, Mary; Lee, Dong Yoon; Owens, Michael; Shapleigh, James P.; Cornwell, Jeffrey C.; Crump, Byron C.

    2014-01-01

    We used metatranscriptomics to study the gene transcription patterns of microbial plankton (0.2 to 64 μm) at a mesohaline station in the Chesapeake Bay under transitions from oxic to anoxic waters in spring and from anoxic to oxic waters in autumn. Samples were collected from surface (i.e., above pycnocline) waters (3 m) and from waters beneath the pycnocline (16 to 22 m) in both 2010 and 2011. Metatranscriptome profiles based on function and potential phylogeny were different between 2010 and 2011 and strongly variable in 2011. This difference in variability corresponded with a highly variable ratio of eukaryotic to bacterial sequences (0.3 to 5.5), reflecting transient algal blooms in 2011 that were absent in 2010. The similarity between metatranscriptomes changed at a lower rate during the transition from oxic to anoxic waters than after the return to oxic conditions. Transcripts related to photosynthesis and low-affinity cytochrome oxidases were significantly higher in shallow than in deep waters, while in deep water genes involved in anaerobic metabolism, particularly sulfate reduction, succinyl coenzyme A (succinyl-CoA)-to-propionyl-CoA conversion, and menaquinone synthesis, were enriched relative to in shallow waters. Expected transitions in metabolism between oxic and anoxic deep waters were reflected in elevated levels of anaerobic respiratory reductases and utilization of propenediol and acetoin. The percentage of archaeal transcripts increased in both years in late summer (from 0.1 to 4.4% of all transcripts in 2010 and from 0.1 to 6.2% in 2011). Denitrification-related genes were expressed in a predicted pattern during the oxic-anoxic transition. Overall, our data suggest that Chesapeake Bay microbial assemblages express gene suites differently in shallow and deep waters and that differences in deep waters reflect variable redox states. PMID:24162577

  17. Characteristics of important stopover locations for migrating birds: remote sensing with radar in the Great Lakes basin.

    PubMed

    Bonter, David N; Gauthreaux, Sidney A; Donovan, Therese M

    2009-04-01

    A preliminary stage in developing comprehensive conservation plans involves identifying areas used by the organisms of interest. The areas used by migratory land birds during temporal breaks in migration (stopover periods) have received relatively little research and conservation attention. Methodologies for identifying stopover sites across large geographic areas have been, until recently, unavailable. Advances in weather-radar technology now allow for evaluation of bird migration patterns at large spatial scales. We analyzed radar data (WSR-88D) recorded during spring migration in 2000 and 2001 at 6 sites in the Great Lakes basin (U.S.A.). Our goal was to link areas of high migrant activity with the land-cover types and landscape contexts corresponding to those areas. To characterize the landscapes surrounding stopover locations, we integrated radar and land-cover data within a geographic information system. We compared landscape metrics within 5 km of areas that consistently hosted large numbers of migrants with landscapes surrounding randomly selected areas that were used by relatively few birds during migration. Concentration areas were characterized by 1.2 times more forest cover and 9.3 times more water cover than areas with little migrant activity. We detected a strong negative relationship between activity of migratory birds and agricultural land uses. Examination of individual migration events confirmed the importance of fragments of forested habitat in highly altered landscapes and highlighted large concentrations of birds departing from near-shore terrestrial areas in the Great Lakes basin. We conclude that conservation efforts can be more effectively targeted through intensive analysis of radar imagery. PMID:18983598

  18. Availability of free oxygen in deep bottom water of some Archean-Early Paleoproterozoic ocean basins as derived from iron formation facies analyses

    NASA Astrophysics Data System (ADS)

    Beukes, N. J.; Smith, A.

    2013-12-01

    Archean to Early Paleoproterozoic ocean basins are commonly, although not exclusively, depicted as rather static systems; either permanently stratified with shallow mixed oxygenated water overlying anoxic deep water or with a totally anoxic water column. The anoxic water columns are considered enriched in dissolved ferrous iron derived from hydrothermal plume activity. These sourced deposition of iron formations through precipitation of mainly ferrihydrite via reaction with free oxygen in the stratified model or anaerobic iron oxidizing photoautotrophs in the anoxic model. However, both these models face a simple basic problem if detailed facies reconstructions of deepwater microbanded iron formations (MIFs) are considered. In such MIFs it is common that the deepest water and most distal facies is hematite rich followed shoreward by magnetite, iron silicate and siderite facies iron formation. Examples of such facies relations are known from jaspilitic iron formation of the ~3,2 Ga Fig Tree Group (Barberton Mountainland), ~ 2,95 Ga iron formations of the Witwatersrand-Mozaan basin and the ~2,5 Ga Kuruman Iron Formation, Transvaal Supergroup, South Africa. Facies relations of these MIFs with associated siliciclastics or carbonates also indicate that the upper water columns of the basins, down to below wave base, were depleted in iron favoring anoxic-oxic stratification rather than total anoxia. In the MIFs it can be shown that hematite in the distal facies represents the earliest formed diagenetic mineral; most likely crystallized from primary ferrihydrite. The problem is one of how ferrihydrite could have been preserved on the ocean floor if it was in direct contact with reducing ferrous deep bottom water. Rather dissolved ferrous iron would have reacted with ferrihydrite to form diagenetic magnetite. This dilemma is resolved if in the area of deepwater hematite MIF deposition, the anoxic ferrous iron enriched plume was detached from the basin floor due to buoyancy

  19. Testing microtaphofacies as an analytic tool for integrated facies and sedimentological analysis using Lower Miocene mixed carbonate/siliciclastic sediments from the North Alpine Foreland Basin

    NASA Astrophysics Data System (ADS)

    Nebelsick, James; Bieg, Ulrich

    2010-05-01

    Taphonomic studies have mostly concentrated on the investigation and quantification of isolated macroscopic faunal and floral elements. Carbonate rocks, in contrary to isolated macroscopic objects, have rarely been specifically addressed in terms of taphonomic features, although many aspects of microfacies analyses are directly related to the preservation of constituent biogenic components. There is thus a high potential for analyzing and quantifying taphonomic features in carbonate rocks (microtaphofacies), not the least as an additional tool for facies analysis. Analyzing the role of taphonomy in carbonate environments can be used to determine how different skeletal architectures through time and evolving synecological relationships (bioerosion and encrustation) have influence carbonate environments and their preservation in the rock record. This pilot study analyses the microtaphofacies of Lower Miocene, shallow water, mixed carbonate - siliciclastic environment from the North Alpine Foreland Basin (Molasse Sea) of southern Germany. The sediments range from biogenic bryomol carbonates to pure siliciclastics. This allows environmental interpretation to be made not only with respect to biogenic composition (dominated by bivalves, gastropods, bryozoans and barnacles), but also to siliciclastic grain characteristics and sedimentary features. Facies interpretation is relatively straight forward with a somewhat varied near shore facies distribution characterized dominated by carbonate which grade into higher energy, siliciclastic offshore sediments. Taphonomic features are assessed along this gradient with respect to total component composition as well as by following the trajectories of individual components types. The results are interpreted with respect to biogenic production, fragmentation, abrasion and transport.

  20. The upper Aptian-Albian succession of the Sergipe basin, Brazil: An integrated paleoenvironmental assessment

    SciTech Connect

    Koutsoukos, E.A.M.; Mello, M.R.; de Azambuja Filho, N.C. ); Hart, M.B. ); Maxwell, J.R. )

    1991-03-01

    A combined micropaleontological, geochemical, and sedimentological study of the upper Aptian-Albian succession from the Sergipe basin, northeastern Brazil, has been undertaken. The paleoenvironmental evolution of the basin from the late Aptian to late Albian can be subdivided into three major depositional phases: (1) late Aptian, (2) early to middle Albian; (3) late Albian. A shallow carbonate compensation depth within upper mesopelagic depths (c. 300-500 m) is inferred for the late Aptian-Albian. Intermittent anoxic events, associated with salinity-stratified water masses, occurred in the basin during the late Aptian to Albian. An oxygen minimum (dysaerobic to anoxic conditions) occurred during the late Aptian to earliest Albian, in middle-outer neritic to upper bathyal settings. Waning dysaerobic to oxic conditions are apparent in the late Albian. The foraminiferal assemblages recovered from the upper Aptian marine deposits have a characteristic Tethyan affinity. The microfaunal evidence suggests that this area of the northern South Atlantic had at least some surface water exchange with low-latitude central North Atlantic-western Tethyan Provinces, even possible at intermediate (epipelagic to mesopelagic) water depths. Contribution of microfaunal elements coming from high-latitude northern (Boreal Realm) and/or southern (Austral) regions is also apparent, although of less significance.

  1. Microbial eukaryote life in the new hypersaline deep-sea basin Thetis.

    PubMed

    Stock, Alexandra; Breiner, Hans-Werner; Pachiadaki, Maria; Edgcomb, Virginia; Filker, Sabine; La Cono, Violetta; Yakimov, Michail M; Stoeck, Thorsten

    2012-01-01

    Only recently, a novel anoxic hypersaline (thalassic) basin in the eastern Mediterranean was discovered at a depth of 3,258 m. The halite-saturated brine of this polyextreme basin revealed one of the highest salt concentrations ever reported for such an environment (salinity of 348‰). Using a eukaryote-specific probe and fluorescence in situ hybridization, we counted 0.6 × 10(4) protists per liter of anoxic brine. SSU rRNA sequence analyses, based on amplification of environmental cDNA identified fungi as the most diverse taxonomic group of eukaryotes in the brine, making deep-sea brines sources of unknown fungal diversity and hotspots for the discovery of novel metabolic pathways and for secondary metabolites. The second most diverse phylotypes are ciliates and stramenopiles (each 20%). The occurrence of closely related ciliate sequences exclusively in other Mediterranean brine basins suggests specific adaptations of the respective organisms to such habitats. Betadiversity-analyses confirm that microeukaryote communities in the brine and the interface are notably different. Several distinct morphotypes in brine samples suggest that the rRNA sequences detected in Thetis brine can be linked to indigenous polyextremophile protists. This contradicts previous assumptions that such extremely high salt concentrations are anathema to eukaryotic life. The upper salinity limits for eukaryotic life remain unidentified. PMID:22009262

  2. Geochemical and biostratigraphic characterization of an upper Cretaceous organic-rich condensed section in the Santos Basin, Brazil

    SciTech Connect

    Trindade, L.A.F., Porsche, E.; Penteado, H.L.B. )

    1996-01-01

    The Cenomanian-Turonian section is worldwide recognized as an organic- rich interval associated with a widespread anoxic event. Samples from this interval, representing proximal sedimentary conditions have been well characterized in the Santos Basin, Brazil, where it reaches 300m thickness. The main objective of this study is to characterize the geochemical and paleoecological attributes as well as to ascertain the biostratigraphic position of this organic-rich section in a more distal location, at ODP Site 356. Biostratigraphic analyses identify die interval at ODP Site 356 as a condensed section ranging in age from Cenomanian to Coniacian (11 m), deposited under anoxic conditions associated with a warm, and climate in the adjacent continental areas. Geochemical analyses indicate high total organic carbon contents (up tp 6.7%), dominance of algal derived material, high relative abundances of homohopanes and methylsteranes, [delta][sup 13]C around -27[per thousand], indicating a typical marine anoxic section. Despite the high content of oil-prone organic matter, this section has not attained thermal evolution appropriated for hydrocarbon generation due to its shallow burial. In proximal areas of the basin, this section is interpreted as a transgressive system tract which is composed by a series of sequences, that are enriched in organic material at their bases. Basinward the interval is thinner, but presents higher organic carbon contents according to geochemical data of ODP Site 356, typical of a condensed section.

  3. Geochemical and biostratigraphic characterization of an upper Cretaceous organic-rich condensed section in the Santos Basin, Brazil

    SciTech Connect

    Trindade, L.A.F., Porsche, E.; Penteado, H.L.B.

    1996-12-31

    The Cenomanian-Turonian section is worldwide recognized as an organic- rich interval associated with a widespread anoxic event. Samples from this interval, representing proximal sedimentary conditions have been well characterized in the Santos Basin, Brazil, where it reaches 300m thickness. The main objective of this study is to characterize the geochemical and paleoecological attributes as well as to ascertain the biostratigraphic position of this organic-rich section in a more distal location, at ODP Site 356. Biostratigraphic analyses identify die interval at ODP Site 356 as a condensed section ranging in age from Cenomanian to Coniacian (11 m), deposited under anoxic conditions associated with a warm, and climate in the adjacent continental areas. Geochemical analyses indicate high total organic carbon contents (up tp 6.7%), dominance of algal derived material, high relative abundances of homohopanes and methylsteranes, {delta}{sup 13}C around -27{per_thousand}, indicating a typical marine anoxic section. Despite the high content of oil-prone organic matter, this section has not attained thermal evolution appropriated for hydrocarbon generation due to its shallow burial. In proximal areas of the basin, this section is interpreted as a transgressive system tract which is composed by a series of sequences, that are enriched in organic material at their bases. Basinward the interval is thinner, but presents higher organic carbon contents according to geochemical data of ODP Site 356, typical of a condensed section.

  4. In situ Measurement of Pore-Water pH in Anoxic Sediments Using Laser Raman Spectrometry

    NASA Astrophysics Data System (ADS)

    Peltzer, E. T.; Luna, M.; Walz, P. M.; Zhang, X.; Brewer, P. G.

    2010-12-01

    Accurate measurement of the geochemical properties of sediment pore waters is of fundamental importance in ocean geochemistry and microbiology. Recent work has shown that the properties of pore waters can be measured rapidly in situ with a novel Raman based insertion probe (Zhang et al., 2010), and that data obtained from anoxic sediments on in situ dissolved methane concentrations are very different (~30x) than from recovered cores due the large scale degassing that occurs during core recovery (Zhang et al., submitted). Degassing of methane must carry with it via Henry’s Law partioning significant quantities of H2S, which is clearly detectable by smell during sample processing, and thus in situ measurement of H2S is also highly desirable. In practice, dissolved H2S is partitioned between the HS- and H2S species as a function of pH with pKa ~7 for the acid dissociation reaction. Since both species are Raman active full determination of the sulfide system is possible if the relative Raman cross sections are known. The diagenetic equations for these reactions are commonly summarized as: 2CH2O + SO4= ↔ 2HCO3- + H2S CH4 + SO4= ↔ HCO3- + HS- + H2O Three of the major components of these equations, CH4, SO4=, and H2S/HS-, are all observable directly by Raman spectroscopy; but the detection of HCO3- presents a challenge due to its low Raman cross section and thus poor sensitivity. We show that pore water pH, which is a good estimator of HCO3- if total CO2 or alkalinity are known, can be measured by observing the H2S / HS- ratio via the equation: pH = pKa + log([HS-]/[H2S]) thereby fully constraining these equations within a single measurement protocol. The Raman peak for HS- is at 2573 cm-1 and for H2S is at 2592 cm-1; thus the peaks are well separated and may easily be deconvoluted from the observed spectrum. We have determined the relative Raman cross sections by a series of laboratory measurements over a range of pH and by using the definition that when pH = p

  5. Archaebacterial activity in the Orca Basin determined by the isolation of characteristic isopranyl ether-linked lipids

    NASA Astrophysics Data System (ADS)

    Dickins, Holli D.; Van Vleet, Edward S.

    1992-04-01

    Phytanyl glycerol ether lipids characteristic of archaebacterial inputs have been quantified in 30 water samples taken in the Orca Basin, an anoxic hypersaline basin located in the northwestern Gulf of Mexico. Because of the Basin's anoxic hypersaline character, it seems likely that archaebacteria may play a significant role in the microbial ecology of the brine. Physical data, including temperature, salinity, per cent transmission, oxygen and nutrient concentrations, also were collected from six depths at five sampling sites in the Basin. Four of the five sites were characterized by a 200 m thick, anoxic brine (salinity ≈ 250 ppt) at an approximate water depth of 2240 m. A stepwise increase in salinity was associated with the brine-seawater interface, increasing from 38 to 150 ppt within the upper portion of the 10 m interface and to >250 ppt within the brine. Three distinct layers of particulate material were observed within the 10 m interface. Corresponding with the salinity gradient was a decrease in dissolved oxygen from 5.0 ml l -1 at 2040 m to 0 ml l -1 within the brine. Ammonia and phosphate concentrations increased from 0 and 2.5 μM above the brine to 519 and 63.5 μM within the brine. At the same time, nitrate concentrations decreased from 22 μM above the brine to negligible within the brine. Depletion of oxygen, with concomitant increases in ammonia and phosphate, decreased nitrate, and the production of methane suggest microbially mediated processes may be occurring at the brine-seawater interface. Highest concentrations of phytanyl ether lipids were observed within the interface, ranging from 29.7 to 84.1 ng l -1. Concentrations were negligible below the interface. Elevated phytanyl ether lipid concentrations in conjunction with microbial activity studies carried out by other investigators suggest that archaebacterial activity is occurring within the brine particulate layers. A decline in ether lipid concentration and microbial activity below this

  6. Consequences of artificial deepwater ventilation in the Bornholm Basin for oxygen conditions, cod reproduction and benthic biomass - a model study

    NASA Astrophysics Data System (ADS)

    Stigebrandt, A.; Rosenberg, R.; Råman Vinnå, L.; Ödalen, M.

    2015-01-01

    We develop and use a circulation model to estimate hydrographical and ecological changes in the isolated basin water of the Bornholm Basin. By pumping well-oxygenated so-called winter water to the greatest depth, where it is forced to mix with the resident water, the rate of deepwater density reduction increases as well as the frequency of intrusions of new oxygen-rich deepwater. We show that pumping 1000 m3 s-1 should increase the rates of water exchange and oxygen supply by 2.5 and 3 times, respectively. The CRV (cod reproduction volume), the volume of water in the isolated basin meeting the requirements for successful cod reproduction (S > 11, O2 > 2 mL L-1), should every year be greater than 54 km3, which is an immense improvement, since it has been much less in certain years. Anoxic bottoms should no longer occur in the basin, and hypoxic events will become rare. This should permit extensive colonization of fauna on the earlier periodically anoxic bottoms. Increased biomass of benthic fauna should also mean increased food supply to economically valuable demersal fish like cod and flatfish. In addition, re-oxygenation of the sediments should lead to increased phosphorus retention by the sediments.

  7. Dissolved inorganic and organic selenium in the Orca Basin

    NASA Astrophysics Data System (ADS)

    Takayanagi, Kazufumi; Wong, George T. F.

    1985-02-01

    The vertical distributions of Se (IV), Se (VI) and dissolved organic Se have been determined in the oxic and non-sulfide-bearing anoxic zones of the Orca Basin. In the oxic waters, the concentration of Se (IV) increases with depth gradually from 0.25 nmole/kg at the surface to a maximum of 0.46 nmole/kg at 750 m and then decreases with depth to a relatively constant concentration of 0.39 nmole/ kg below 1,230 m. The concentration of Se (VI) is rather uniform in the top 250 m at about 0.24 nmole/ kg. Below 250 m it increases with depth to 0.50 nmole/kg at 1.230 m, and it stays relatively constant below this depth. The concentration of organic Se increases from 0.50 nmole/kg at the surface to 1.39 nmole/kg at 78 m. A pronounced broad maximum of organic Se exists between 78 and 250 m. The concentration decreases with depth below 250 m, dropping sharply between 250 and 380 m and more gradually at greater depths. It becomes undetectable at 1,230 m. Organic Se is the dominant species above 250 m. Se (IV) is the most abundant between 250 and 1,000 m while Se (VI) becomes the dominant species below 1,000 m. The distributions of these three species can be explained by the biological uptake of Se in the surface waters and the multi-step regeneration of Se from biogenic particles at greater depths. In suboxic waters at the oxic-anoxic interface, the concentration of Se (IV) increases while that of Se (VI) decreases reflecting a change in redox conditions in the environment. In the anoxic brine, the concentration of Se (IV) is around 0.25 nmole/kg while Se (VI) is undetectable. The concentration of organic Se increases sharply in the suboxic waters and reaches 2.6 nmole/kg in the anoxic brines probably as a result of the decomposition of organic matter and/or a diffusive flux from the underlying sediment.

  8. Treatment of petrochemical wastewater by microaerobic hydrolysis and anoxic/oxic processes and analysis of bacterial diversity.

    PubMed

    Yang, Qi; Xiong, Panpan; Ding, Pengyuan; Chu, Libing; Wang, Jianlong

    2015-11-01

    Microaerobic hydrolysis-acidification (MHA)-anoxic-oxic (A/O) processes were developed to treat actual petrochemical wastewater. The results showed that the overall COD removal efficiency was 72-79% at HRT=20h, and MHA accounted for 33-42% of COD removal, exhibiting good efficiency of acidogenic fermentation. Ammonium removal was more than 94%. The main pollutants in the influent were identified to be benzene, ketone, alcohols, amine, nitrile and phenols by GC-MS, and the majority of pollutants could be removed by MHA-A/O treatment. Proteobacteria was the most dominant bacteria in the system, accounting for more than 55% of the reads. The predominant genera in MHA, anoxic and oxic reactors were Anaerolineaceae and Sulfuritalea, Lactococcus and Blastocatella, and Saprospiraceae uncultured and Nitrosomonadaceae, respectively. This treatment system exhibited good performance in degrading the complex compounds in the petrochemical wastewater. PMID:26233329

  9. The effect of iron dosing on reducing waste activated sludge in the oxic-settling-anoxic process.

    PubMed

    Yagci, Nevin; Novak, John T; Randall, Clifford W; Orhon, Derin

    2015-10-01

    This study evaluates the biological solid reduction in a conventional activated sludge system with an anoxic/anaerobic side stream reactor receiving 1/10 of return sludge mass. Influent iron concentrations and feeding modes were changed to explore the consistency between the influent iron concentration and yield values and to assess the impact of feeding pattern. The results indicated that sludge reduction occurs during alternately exposure of sludge to aerobic and anoxic/anaerobic conditions in a range of 38-87%. The sludge reduction values reached a maximum level with the higher iron concentrations. Thus, it is concluded that this configuration is more applicable for plants receiving high iron concentrations in the wastewaters. PMID:26141280

  10. Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary.

    PubMed

    Eggleston, Erin M; Lee, Dong Y; Owens, Michael S; Cornwell, Jeffrey C; Crump, Byron C; Hewson, Ian

    2015-07-01

    Intense annual spring phytoplankton blooms and thermohaline stratification lead to anoxia in Chesapeake Bay bottom waters. Once oxygen becomes depleted in the system, microbial communities use energetically favourable alternative electron acceptors for respiration. The extent to which changes in respiration are reflected in community gene expression have only recently been investigated. Metatranscriptomes prepared from near-bottom water plankton over a 4-month time series in central Chesapeake Bay demonstrated changes consistent with terminal electron acceptor availability. The frequency of respiration-related genes in metatranscriptomes was examined by BLASTx against curated databases of genes intimately and exclusively involved in specific electron acceptor utilization pathways. The relative expression of genes involved in denitrification and dissimilatory nitrate reduction to ammonium were coincident with changes in nitrate, nitrite and ammonium concentrations. Dissimilatory iron and manganese reduction transcript ratios increase during anoxic conditions and corresponded with the highest soluble reactive phosphate and manganese concentrations. The sulfide concentration peaked in late July and early August and also matched dissimilatory sulfate reduction transcript ratios. We show that rather than abrupt transitions between terminal electron acceptors, there is substantial overlap in time and space of these various anaerobic respiratory processes in Chesapeake Bay. PMID:25470994

  11. Acetate in recent anoxic sediments: Direct and indirect measurements of concentration and turnover rates

    NASA Astrophysics Data System (ADS)

    Shaw, David G.; McIntosh, Douglas J.

    1990-12-01

    While acetate is generally regarded as an important intermediate in the mineralization of organic matter in anoxic sediment systems, some quantitative studies in marine systems (including our own) have measured acetate oxidation rates in excess of sulphate reduction rates where sulphate is known to be the principal electron acceptor. We revisited Skan Bay, Alaska, where we had previously made such observations, for a reexamination of acetate turnover. Measurements of acetate concentrations, production rate, oxidation rate and sulphate reduction rate as well as bioenergetic considerations led to the conclusion that acetate oxidation rate in 15-18-cm deep sediment is 1·1-1·5 μM h -1. The possibility that previous measurements were high because of a non-citric-acid-cycle pathway of acetate oxidation (suggested by recent laboratory studies) was excluded. It appears that our previous turnover measurements were high mainly because of high acetate concentrations. Procedures used for the isolation of porewater for acetate determination may influence results to an extent not previously recognized.

  12. Electricity generation by anaerobic bacteria and anoxic sediments from hypersaline soda lakes

    USGS Publications Warehouse

    Miller, L.G.; Oremland, R.S.

    2008-01-01

    Anaerobic bacteria and anoxic sediments from soda lakes produced electricity in microbial fuel cells (MFCs). No electricity was generated in the absence of bacterial metabolism. Arsenate respiring bacteria isolated from moderately hypersaline Mono Lake (Bacillus selenitireducens), and salt-saturated Searles Lake, CA (strain SLAS-1) oxidized lactate using arsenate as the electron acceptor. However, these cultures grew equally well without added arsenate using the MFC anode as their electron acceptor, and in the process oxidized lactate more efficiently. The decrease in electricity generation by consumption of added alternative electron acceptors (i.e. arsenate) which competed with the anode for available electrons proved to be a useful indicator of microbial activity and hence life in the fuel cells. Shaken sediment slurries from these two lakes also generated electricity, with or without added lactate. Hydrogen added to sediment slurries was consumed but did not stimulate electricity production. Finally, electricity was generated in statically incubated "intact" sediment cores from these lakes. More power was produced in sediment from Mono Lake than from Searles Lake, however microbial fuel cells could detect low levels of metabolism operating under moderate and extreme conditions of salt stress. ?? 2008 US Government.

  13. Bacterial dissimilatory reduction of arsenic(V) to arsenic(III) in anoxic sediments

    USGS Publications Warehouse

    Dowdle, P.R.; Laverman, A.M.; Oremland, R.S.

    1996-01-01

    Incubation of anoxic salt marsh sediment slurries with 10 mM As(V) resulted in the disappearance over time of the As(V) in conjunction with its recovery as As(III). No As(V) reduction to As(III) occurred in heat- sterilized or formalin-killed controls or in live sediments incubated in air. The rate of As(V) reduction in slurries was enhanced by addition of the electron donor lactate, H2, or glucose, whereas the respiratory inhibitor/uncoupler dinitrophenol, rotenone, or 2-heptyl-4-hydroxyquinoline N-oxide blocked As(V) reduction. As(V) reduction was also inhibited by tungstate but not by molybdate, sulfate, or phosphate. Nitrate inhibited As(V) reduction by its action as a preferred respiratory electron acceptor rather than as a structural analog of As(V). Nitrate-respiring sediments could reduce As(V) to As(III) once all the nitrate was removed. Chloramphenicol blocked the reduction of As(V) to As(III) in nitrate- respiring sediments, suggesting that nitrate and arsenate were reduced by separate enzyme systems. Oxidation of [2-14C]acetate to 14CO2 by salt marsh and freshwater sediments was coupled to As(V). Collectively, these results show that reduction of As(V) in sediments proceeds by a dissimilatory process. Bacterial sulfate reduction was completely inhibited by As(V) as well as by As(III).

  14. Bacterial ethane formation from reduced, ethylated sulfur compounds in anoxic sediments

    USGS Publications Warehouse

    Oremland, R.S.; Whiticar, Michael J.; Strohmaier, F.E.; Kiene, R.P.

    1988-01-01

    Trace levels of ethane were produced biologically in anoxic sediment slurries from five chemically different aquatic environments. Gases from these locations displayed biogenic characteristics, having 12C-enriched values of ??13CH4 (-62 to -86%.), ??13C2H6 (-35 to -55%.) and high ratios (720 to 140,000) of CH4 [C2H6 + C3H8]. Endogenous production of ethane by slurries was inhibited by autoclaving or by addition of the inhibitor of methanogenic bacteria, 2-bromoethanesulfonic acid (BES). Ethane formation was stimulated markedly by ethanethiol (ESH), and, to a lesser extent, by diethylsulfide (DES). Formation of methane and ethane in ESH- or DES-amended slurries was blocked by BES. Experiments showed that ethionine (or an analogous compound) could be a precursor of ESH. Ethylamine or ethanol additions to slurries caused only a minor stimulation of ethane formation. Similarly, propanethiol additions resulted in only a minor enhancement of propane formation. Cell suspensions of a methyltrophic methanogen produced traces of ethane when incubated in the presence of DES, although the organism did not grow on this compound. These results indicate that methanogenic bacteria produce ethane from the traces of ethylated sulfur compounds present in recent sediments. Preliminary estimates of stable carbon isotope fractionation associated with sediment methane formation from dimethylsulfide was about 40%., while ethane formation from DES and ESH was only 4. 6 and 6.5%., respectively. ?? 1988.

  15. A lab-scale anoxic/oxic-bioelectrochemical reactor for leachate treatments.

    PubMed

    Zhang, Guodong; Jiao, Yan; Lee, Duu-Jong

    2015-06-01

    A membraneless, liter-scale bioelectrochemical reactor with both bioanode and biocathode was established for landfill leachate treatment. Anoxic/oxic (A/O) zones at anode compartment and cathode compartment, respectively, were connected with a reflux to facilitate nitrogen removal. With raw landfill leachate of 17,500-22,600 mg L(-1) chemical oxygen demand (COD) and 1170-1490 mg L(-1) NH4(+)-N, the tested reactor removed 89.1±1.6% of chemical oxygen demand and 99.2±0.1% of NH4(+)-N at 3.0 kg COD m(-3) d(-1). The corresponding maximum power density was 2.71±0.09 W m(-3), with internal resistance of 46.7±1.6 Ω and open circuit voltage of 727±7 mV. The species of Pseudomonas, Desulfovibrio, Bacillus, Enterococcus, Pelospora, Dehalobacter dominated the anodic community, while those of methylotrophs, Rhodobacter, Verrucomicrobiaceae, Geobacter, Flavobacterium, Thauera, Desulfovibrio and Aeromonas dominated the cathodic community. The proposed A/O bioelectrochemical reactor is a prototype for practical treatment of landfill leachate at affordable costs. PMID:25812812

  16. Oxygen Delivery from Hyperbarically Loaded Microtanks Extends Cell Viability in Anoxic Environments

    PubMed Central

    Cook, Colin A.; Hahn, Kathryn C.; Morrissette-McAlmon, Justin B.F.; Grayson, Warren L.

    2016-01-01

    Oxygen diffusion limitations within nascent tissue engineered (TE) grafts lead to the development of hypoxic regions, cell death, and graft failure. Previous efforts have been made to deliver oxygen within TE scaffolds, including peroxide-doping, perfluorocarbons, and hyperbaric oxygen therapy, to mitigate these effects and help maintain post transplantation cell viability, but these have suffered from significant drawbacks. Here we present a novel approach utilizing polymeric hollow-core microspheres that can be hyperbarically loaded with oxygen and subsequently provide prolonged oxygen delivery. These oxygen carriers are termed, microtanks. With an interest in orthopedic applications, we combined microtanks within polycaprolactone to form solid phase constructs with oxygen delivery capabilities. The mathematical laws governing oxygen delivery from microtank-loaded constructs are developed along with empirical validation. Constructs achieved periods of oxygen delivery out to 6 days, which was shown to prolong the survival of human adipose derived stem cells (hASCs) and human umbilical vein endothelial cells (HUVECs) as well as to enhance their cellular morphology under anoxic conditions. The results of this study suggest the microtank approach may be a feasible means of maintaining cell viability in TE scaffolds during the critical period of vascularization in vivo. PMID:25818444

  17. Metal impacts on microbial biomass in the anoxic sediments of a contaminated lake

    SciTech Connect

    Gough, Heidi L.; Dahl, Amy L.; Nolan, Melissa A.; Gaillard, Jean-Francois; Stahl, David A.

    2008-04-26

    Little is known about the long-term impacts of metal contamination on the microbiota of anoxic lake sediments. In this study, we examined microbial biomass and metals (arsenic, cadmium, chromium, copper, iron, lead, manganese, and zinc) in the sediments of Lake DePue, a backwater lake located near a former zinc smelter. Sediment core samples were examined using two independent measures for microbial biomass (total microscopic counts and total phospholipid-phosphate concentrations), and for various fractions of each metal (pore water extracts, sequential extractions, and total extracts of all studied metals and zinc speciation by X-ray absorption fine structure (XAFS). Zinc concentrations were up to 1000 times higher than reported for sediments in the adjacent Illinois River, and ranged from 21,400 mg/kg near the source to 1,680 mg/kg near the river. However, solid metal fractions were not well correlated with pore water concentrations, and were not good predictors of biomass concentrations. Instead, biomass, which varied among sites by as much as two-times, was inversely correlated with concentrations of pore water zinc and arsenic as established by multiple linear regression. Monitoring of other parameters known to naturally influence biomass in sediments (e.g., organic carbon concentrations, nitrogen concentrations, pH, sediment texture, and macrophytes) revealed no differences that could explain observed biomass trends. This study provides strong support for control of microbial abundance by pore water metal concentrations in contaminated freshwater sediments.

  18. Anoxic Iron Cycling Bacteria from an Iron Sulfide- and Nitrate-Rich Freshwater Environment

    PubMed Central

    Haaijer, Suzanne C. M.; Crienen, Gijs; Jetten, Mike S. M.; Op den Camp, Huub J. M.

    2012-01-01

    In this study, both culture-dependent and culture-independent methods were used to determine whether the iron sulfide mineral- and nitrate-rich freshwater nature reserve Het Zwart Water accommodates anoxic microbial iron cycling. Molecular analyses (16S rRNA gene clone library and fluorescence in situ hybridization, FISH) showed that sulfur-oxidizing denitrifiers dominated the microbial population. In addition, bacteria resembling the iron-oxidizing, nitrate-reducing Acidovorax strain BrG1 accounted for a major part of the microbial community in the groundwater of this ecosystem. Despite the apparent abundance of strain BrG1-like bacteria, iron-oxidizing nitrate reducers could not be isolated, likely due to the strictly autotrophic cultivation conditions adopted in our study. In contrast an iron-reducing Geobacter sp. was isolated from this environment while FISH and 16S rRNA gene clone library analyses did not reveal any Geobacter sp.-related sequences in the groundwater. Our findings indicate that iron-oxidizing nitrate reducers may be of importance to the redox cycling of iron in the groundwater of our study site and illustrate the necessity of employing both culture-dependent and independent methods in studies on microbial processes. PMID:22347219

  19. Carbonate platform evidence of ocean acidification at the onset of the early Toarcian oceanic anoxic event

    NASA Astrophysics Data System (ADS)

    Trecalli, Alberto; Spangenberg, Jorge; Adatte, Thierry; Föllmi, Karl B.; Parente, Mariano

    2012-12-01

    The early Toarcian oceanic anoxic event (Early Jurassic;˜183 Myr ago) is associated with one of the largest negative carbon isotope excursion (CIE) in the whole Phanerozoic (3-7‰). Estimates of the magnitude and rate of CO2 injection in the ocean-atmosphere system are compatible with a scenario of ocean acidification. Many carbonate platforms drowned in the Pliensbachian, well before the early Toarcian event. In this paper we test the hypothesis of surface water ocean acidification by presenting data from a resilient carbonate platform: the Apennine Carbonate Platform of southern Italy. The studied sections document a dramatic shift of the carbonate factory from massive biocalcification to chemical precipitation. Lithiotis bivalves and calcareous algae (Palaeodasycladus mediterraneus), which were the most prolific carbonate producers of Pliensbachian carbonate platforms, disappear during the first phase of the early Toarcian CIE, before the most depleted values are reached. We discuss the local versus supraregional significance of this shift and propose a scenario involving abrupt decline of carbonate saturation, forced by CO2 release at the beginning of the early Toarcian CIE, followed by a calcification overshoot, driven by the recovery of ocean alkalinity. Attribution of the demise of carbonate platform hypercalcifiers to ocean acidification is supported by palaeophysiology and reinforced by experimental data on the detrimental effects of ocean acidification on recent shellfishes and calcareous algae.

  20. Dissolved organic matter in anoxic pore waters from Mangrove Lake, Bermuda

    USGS Publications Warehouse

    Orem, W.H.; Hatcher, P.G.; Spiker, E. C.; Szeverenyi, N.M.; Maciel, G.E.

    1986-01-01

    Dissolved organic matter and dissolved inorganic chemical species in anoxic pore water from Mangrove Lake, Bermuda sediments were studied to evaluate the role of pore water in the early diagenesis of organic matter. Dissolved sulphate, titration alkalinity, phosphate, and ammonia concentration versus depth profiles were typical of many nearshore clastic sediments and indicated sulphate reduction in the upper 100 cm of sediment. The dissolved organic matter in the pore water was made up predominantly of large molecules, was concentrated from large quantities of pore water by using ultrafiltration and was extensively tudied by using elemental and stable carbon isotope analysis and high-resolution, solid state 13C nuclear magnetic resonance and infrared spectroscopy. The results indicate that this material has a predominantly polysaccharide-like structure and in addition contains a large amount of oxygen-containing functional groups (e.g., carboxyl groups). The 13C nulcear magnetic resonance spectra of the high-molecular-weight dissolved organic matter resemble those of the organic matter in the surface sediments of Mangrove Lake. We propose that this high-molecular-weight organic matter in pore waters represents the partially degraded, labile organic components of the sedimentary organic matter and that pore waters serve as a conduit for removal of these labile organic components from the sediments. The more refractory components are, thus, selectively preserved in the sediments as humic substances (primarily humin). ?? 1986.

  1. Reduction in Neural Performance following Recovery from Anoxic Stress Is Mimicked by AMPK Pathway Activation

    PubMed Central

    Money, Tomas G. A.; Sproule, Michael K. J.; Hamour, Amr F.; Robertson, R. Meldrum

    2014-01-01

    Nervous systems are energetically expensive to operate and maintain. Both synaptic and action potential signalling require a significant investment to maintain ion homeostasis. We have investigated the tuning of neural performance following a brief period of anoxia in a well-characterized visual pathway in the locust, the LGMD/DCMD looming motion-sensitive circuit. We hypothesised that the energetic cost of signalling can be dynamically modified by cellular mechanisms in response to metabolic stress. We examined whether recovery from anoxia resulted in a decrease in excitability of the electrophysiological properties in the DCMD neuron. We further examined the effect of these modifications on behavioural output. We show that recovery from anoxia affects metabolic rate, flight steering behaviour, and action potential properties. The effects of anoxia on action potentials can be mimicked by activation of the AMPK metabolic pathway. We suggest this is evidence of a coordinated cellular mechanism to reduce neural energetic demand following an anoxic stress. Together, this represents a dynamically-regulated means to link the energetic demands of neural signaling with the environmental constraints faced by the whole animal. PMID:24533112

  2. Substrate Uptake and Subcellular Compartmentation of Anoxic Cholesterol Catabolism in Sterolibacterium denitrificans*

    PubMed Central

    Lin, Ching-Wen; Wang, Po-Hsiang; Ismail, Wael; Tsai, Yu-Wen; El Nayal, Ashraf; Yang, Chia-Ying; Yang, Fu-Chun; Wang, Chia-Hsiang; Chiang, Yin-Ru

    2015-01-01

    Cholesterol catabolism by actinobacteria has been extensively studied. In contrast, the uptake and catabolism of cholesterol by Gram-negative species are poorly understood. Here, we investigated microbial cholesterol catabolism at the subcellular level. 13C metabolomic analysis revealed that anaerobically grown Sterolibacterium denitrificans, a β-proteobacterium, adopts an oxygenase-independent pathway to degrade cholesterol. S. denitrificans cells did not produce biosurfactants upon growth on cholesterol and exhibited high cell surface hydrophobicity. Moreover, S. denitrificans did not produce extracellular catabolic enzymes to transform cholesterol. Accordingly, S. denitrificans accessed cholesterol by direction adhesion. Cholesterol is imported through the outer membrane via a putative FadL-like transport system, which is induced by neutral sterols. The outer membrane steroid transporter is able to selectively import various C27 sterols into the periplasm. S. denitrificans spheroplasts exhibited a significantly higher efficiency in cholest-4-en-3-one-26-oic acid uptake than in cholesterol uptake. We separated S. denitrificans proteins into four fractions, namely the outer membrane, periplasm, inner membrane, and cytoplasm, and we observed the individual catabolic reactions within them. Our data indicated that, in the periplasm, various periplasmic and peripheral membrane enzymes transform cholesterol into cholest-4-en-3-one-26-oic acid. The C27 acidic steroid is then transported into the cytoplasm, in which side-chain degradation and the subsequent sterane cleavage occur. This study sheds light into microbial cholesterol metabolism under anoxic conditions. PMID:25418128

  3. Desulfuromonas thiophila sp. nov., a new obligately sulfur-reducing bacterium from anoxic freshwater sediment

    USGS Publications Warehouse

    Finster, K.; Coates, J.D.; Liesack, W.; Pfennig, N.

    1997-01-01

    A mesophilic, acetate-oxidizing, sulfur-reducing bacterium, strain NZ27(T), was isolated from anoxic mud from a freshwater sulfur spring. The cells were ovoid, motile, and gram negative. In addition to acetate, the strain oxidized pyruvate, succinate, and fumarate. Sulfur flower could be replaced by polysulfide as an electron acceptor. Ferric nitrilotriacetic acid was reduced in the presence of pyruvate; however, this reduction did not sustain growth. These phenotypic characteristics suggested that strain NZ27(T) is affiliated with the genus Desulfuromonas. A phylogenetic analysis based on the results of comparative 16S ribosomal DNA sequencing confirmed that strain NZ27(T) belongs to the Desulfuromonas cluster in the recently proposed family 'Geobacteraceae' in the delta subgroup of the Proteobacteria. In addition, the results of DNA-DNA hybridization studies confirmed that strain NZ27(T) represents a novel species. Desulfuromonas thiophila, a name tentatively used in previous publications, is the name proposed for strain NZ27(T) in this paper.

  4. Chloropigment nitrogen isotopes: new insights on export production during oceanic anoxic events

    NASA Astrophysics Data System (ADS)

    Higgins, M. B.; Robinson, R. S.; Pearson, A.

    2011-12-01

    The Mesozoic is marked by several widespread occurrences of intense organic matter burial, corresponding to proposed Oceanic Anoxic Events (OAEs). Sediments from the largest of these events, the Cenomanian-Turonian OAE 2, are characterized by lower nitrogen isotope ratios than are seen in modern marine settings. We use a high-resolution porphyrin nitrogen isotope record through OAE 2 to interpret nitrogen isotope depletion that is common during OAEs. Nitrogen isotope values of sedimentary chloropigments reflect a diagenetically unaltered signal of surface water nitrogen sources. Additionally, due to taxonomic differences in chlorophyll nitrogen fractionation, the nitrogen isotopic offset between chloropigments and bulk nitrogen can be used to estimate the relative contribution of cyanobacteria and eukaryotic algae to export production. Our porphyrin data show that eukaryotes contributed the quantitative majority of export production throughout OAE 2, suggesting that any explanation for the OAE nitrogen cycle and its isotopic values be consistent with a eukaryote-dominated ecosystem. We propose that new production during OAE 2 primarily was driven by direct assimilation of upwelled NH4+, supplemented by diazotrophy. A marine nitrogen reservoir dominated by NH4+, in combination with known kinetic isotope effects, could lead to eukaryotic biomass depleted in 15N.

  5. Uranium(VI) Reduction by Nanoscale Zerovalent Iron in Anoxic Batch Systems

    SciTech Connect

    Yan, Sen; Hua, Bin; Bao, Zhengyu; Yang, John; Liu, Chongxuan; Deng, Baolin

    2010-11-17

    This study investigated the influences of pH, bicarbonate, and calcium on U(VI) adsorption and reduction by synthetic nanosize zero valent iron (nano Fe0) particles under an anoxic condition. The results showed that about 87.1%, 82.7% and 78.3% of U(VI) could be reduced within 96 hours in the presence of 10 mM bicarbonate at pHs 6.92, 8.03 and 9.03, respectively. The rates of U(VI) reduction and adsorption by nano Fe0, however, varied significantly with increasing pH and concentrations of bicarbonate and/or calcium. Solid phase analysis by X-ray photoelectron spectroscopy confirmed the formation of UO2 and iron (hydr)oxides as a result of the redox interactions between adsorbed U(VI) and nano Fe0. This study highlights the potential important role of groundwater chemical composition in controlling the rates of U(VI) reductive immobilization using nano Fe0 in subsurface environments.

  6. Seasonal C-13 variations of methane from an anoxic marine sediment

    NASA Technical Reports Server (NTRS)

    Blair, Neal; Desmarais, David S.; Martens, Christopher S.

    1985-01-01

    Recent analyses of glacial ice suggest that the atmospheric concentration of methane has doubled in the last several hundred years, presumably due to anthropogenic perturbations of the relevant biogeochemical cycles. In principal, carbon isotopic measurements of atmospheric methane would provide information concerning changes in the sources and sinks of methane. The isotopic composition of methane is dependent on the source of the methane carbon, the mechanism of methane synthesis, and the degree and mode of oxidation which the methane has experienced. Unfortunately, few carbon isotopic measurements of atmospheric variations have been reported, so conclusions about temporal isotopic variations cannot be made. Also, before isotopic measurements of atmospheric methane can be used to identify changes in methane isotopic composition from different sources must be obtained. Methane bubbles from the anoxic sediments of Cape Lookout Bight, NC exhibit seasonal C-13 variations. The C-13 values ranged from -58 in August to -64 in the winter months with the evolution of the C-13 enriched gas occurring during periods of peak methane production. Even though a few intramolecular C-13 measurements of the pore water acetate have been made (methyl group, -26 per mil; carbonyl, -6 per mil), it is not clear how the acetate fermentation pathway affects the methane C-13/C-12 composition.

  7. Prognostically important EEG coma patterns in diffuse anoxic and traumatic encephalopathies in adults.

    PubMed

    Synek, V M

    1988-04-01

    Because of the paucity in the English literature of a detailed and universally accepted EEG grading scale relating to survival after diffuse traumatic and anoxic brain insults, prognostically oriented EEG patterns including recently described abnormalities are presented and discussed. The significance of these patterns may also apply in cases of coma of other etiologies, which can present morphologically similar features. EEG patterns have been classified into five major grades based on an internationally accepted scale. Individual patterns have been more clearly defined on the basis of the morphology of dominant activities, their distribution, persistence, and reactivity to external stimulation. Favorable outcome with survival seems to occur with both grade 1 and the "reactive type" of grade 2 abnormalities, with preservation of normal sleep features, and with frontal monorhythmic delta activity. Prognostically uncertain patterns are "nonreactive" grade 2 abnormalities, diffuse delta activity with grade 3 abnormality, and the "reactive type of alpha pattern coma." The following patterns are suggested to be prognostically malignant if persistent: grade 3 abnormality with small amplitude, diffuse, irregular delta activity; grade 4 ("burst suppression pattern"), in particular when epileptiform discharges are present and with "low-output EEG"; and grade 5 ("isoelectric EEG"). Fatal outcome is also common with the "nonreactive type of alpha pattern coma" and the recently reported "theta pattern coma." These patterns are presented in the illustrations. It is intended that this more detailed subdivision will promote understanding between electroencephalographers using visual EEG assessment in cases of coma. PMID:3074973

  8. Massive dissociation of gas hydrate during a Jurassic oceanic anoxic event

    PubMed

    Hesselbo; Grocke; Jenkyns; Bjerrum; Farrimond; Morgans Bell HS; Green

    2000-07-27

    In the Jurassic period, the Early Toarcian oceanic anoxic event (about 183 million years ago) is associated with exceptionally high rates of organic-carbon burial, high palaeotemperatures and significant mass extinction. Heavy carbon-isotope compositions in rocks and fossils of this age have been linked to the global burial of organic carbon, which is isotopically light. In contrast, examples of light carbon-isotope values from marine organic matter of Early Toarcian age have been explained principally in terms of localized upwelling of bottom water enriched in 12C versus 13C (refs 1,2,5,6). Here, however, we report carbon-isotope analyses of fossil wood which demonstrate that isotopically light carbon dominated all the upper oceanic, biospheric and atmospheric carbon reservoirs, and that this occurred despite the enhanced burial of organic carbon. We propose that--as has been suggested for the Late Palaeocene thermal maximum, some 55 million years ago--the observed patterns were produced by voluminous and extremely rapid release of methane from gas hydrate contained in marine continental-margin sediments. PMID:10935632

  9. Hydrobiogeochemical interactions in 'anoxic' limestone drains for neutralization of acidic mine drainage

    USGS Publications Warehouse

    Robbins, E.I.; Cravotta, C.A., III; Savela, C.E.; Nord, G.L., Jr.

    1999-01-01

    Processes affecting neutralization of acidic coal mine drainage were evaluated within 'anoxic' limestone drains (ALDs). Influents had pH???3.5 and dissolved oxygen <2 mg/l. Even though effluents were near neutral (pH 6 and alkalinity acidity), two of the four ALDs were failing due to clogging. Mineral-saturation indices indicated the potential for dissolution of calcite and gypsum, and precipitation of Al3+ and Fe3+ compounds. Cleavage mounts of calcite and gypsum that were suspended within the ALDs and later examined microscopically showed dissolution features despite coatings by numerous bacteria, biofilms, and Fe-Al-Si precipitates. In the drain exhibiting the greatest flow reduction, Al-hydroxysulfates had accumulated on limestone surfaces and calcite etch points, thus causing the decline in transmissivity and dissolution. Therefore, where Al loadings are high and flow rates are low, a pre-treatment step is indicated to promote Al removal before diverting acidic mine water into alkalinity-producing materials. ?? 1998 Elsevier Science Ltd.

  10. Oxygen delivery from hyperbarically loaded microtanks extends cell viability in anoxic environments.

    PubMed

    Cook, Colin A; Hahn, Kathryn C; Morrissette-McAlmon, Justin B F; Grayson, Warren L

    2015-06-01

    Oxygen diffusion limitations within nascent tissue engineered (TE) grafts lead to the development of hypoxic regions, cell death, and graft failure. Previous efforts have been made to deliver oxygen within TE scaffolds, including peroxide-doping, perfluorocarbons, and hyperbaric oxygen therapy, to mitigate these effects and help maintain post transplantation cell viability, but these have suffered from significant drawbacks. Here we present a novel approach utilizing polymeric hollow-core microspheres that can be hyperbarically loaded with oxygen and subsequently provide prolonged oxygen delivery. These oxygen carriers are termed, microtanks. With an interest in orthopedic applications, we combined microtanks within polycaprolactone to form solid phase constructs with oxygen delivery capabilities. The mathematical laws governing oxygen delivery from microtank-loaded constructs are developed along with empirical validation. Constructs achieved periods of oxygen delivery out to 6 days, which was shown to prolong the survival of human adipose derived stem cells (hASCs) and human umbilical vein endothelial cells (HUVECs) as well as to enhance their cellular morphology under anoxic conditions. The results of this study suggest the microtank approach may be a feasible means of maintaining cell viability in TE scaffolds during the critical period of vascularization in vivo. PMID:25818444

  11. On the formation of hydrogen gas on copper in anoxic water

    NASA Astrophysics Data System (ADS)

    Johansson, Adam Johannes; Lilja, Christina; Brinck, Tore

    2011-08-01

    Hydrogen gas has been detected in a closed system containing copper and pure anoxic water [P. Szakalos, G. Hultquist, and G. Wikmark, Electrochem. Solid-State Lett. 10, C63 (2007), 10.1149/1.2772085 and G. Hultquist, P. Szakalos, M. Graham, A. Belonoshko, G. Sproule, L. Grasjo, P. Dorogokupets, B. Danilov, T. Aastrup, G. Wikmark, G. Chuah, J. Eriksson, and A. Rosengren, Catal. Lett. 132, 311 (2009), 10.1007/s10562-009-0113-x]. Although bulk corrosion into any of the known phases of copper is thermodynamically forbidden, the present paper shows how surface reactions lead to the formation of hydrogen gas in limited amounts. While water cleavage on copper has been reported and investigated before, formation of molecular hydrogen at a single-crystal Cu[100] surface is here explored using density functional theory and transition state theory. It is found that although solvent catalysis seems possible, the fastest route to the formation of molecular hydrogen is the direct combination of hydrogen atoms on the copper surface. The activation free energy (△Gs‡f) of hydrogen formation in condensed phase is 0.70 eV, which corresponds to a rate constant of 10 s-1 at 298.15 K, i.e., a relatively rapid process. It is estimated that at least 2.4 ng hydrogen gas could form per cm2 on a perfect copper surface.

  12. Molecular Characterization and In Situ Quantification of Anoxic Arsenite Oxidizing Denitrifying Enrichment Cultures

    PubMed Central

    Sun, Wenjie; Sierra, Reyes; Fernandez, Nuria; Sanz, Jose Luis; Amils, Ricardo; Legatzki, Antje; Maier, Raina M.; Field, Jim A.

    2015-01-01

    To explore bacteria involved in the oxidation of arsenite (As(III)) under denitrifying conditions, three enrichment cultures (ECs) and one mixed culture (MC) were characterized that originated from anaerobic environmental samples. The oxidation of As(III) (0.5 mM) was dependent on NO3− addition and N2-formation was dependent on As(III) addition. The ratio of N2-N formed to As(III) fed approximated the expected stoichiometry of 2.5. A 16S rRNA gene clone library analysis revealed three predominant phylotypes. The first, related to the genus Azoarcus from the division β-Proteobacteria, was found in the three ECs. The other two predominant phylotypes were closely related to the genera Acidovorax and Diaphorobacter within the Comamonadaceae family of β-Proteobacteria and one of these was present in all of the cultures examined. Fluorescent in situ hybridization (FISH) confirmed that Azoarcus accounted for a large fraction of bacteria present in the ECs. The Azoarcus clones had 96% sequence homology with Azoarcus sp. strain DAO1, an isolate previously reported to oxidize As(III) with nitrate. FISH analysis also confirmed that Comamonadaceae were present in all cultures. Pure cultures of Azoarcus and Diaphorobacter were isolated and shown to be responsible for nitrate-dependent As(III) oxidation. These results taken as a whole suggest that bacteria within the genus Azoarcus and the family Comamonadaceae are involved in the observed anoxic oxidation of As(III). PMID:19187211

  13. Immobilization of selenate by iron in aqueous solution under anoxic conditions and the influence of uranyl

    NASA Astrophysics Data System (ADS)

    Puranen, Anders; Jonsson, Mats; Dähn, Rainer; Cui, Daqing

    2009-08-01

    In proposed high level radioactive waste repositories a large part of the spent nuclear fuel (SNF) canisters are commonly composed of iron. Selenium is present in spent nuclear fuel as a long lived fission product. This study investigates the influence of iron on the uptake of dissolved selenium in the form of selenate and the effect of the presence of dissolved uranyl on the above interaction of selenate. The iron oxide, and selenium speciation on the surfaces was investigated by Raman spectroscopy. X-ray Absorption Spectroscopy was used to determine the oxidation state of the selenium and uranium on the surfaces. Under the simulated groundwater conditions (10 mM NaCl, 2 mM NaHCO 3, <0.1 ppm O 2) the immobilized selenate was found to be reduced to oxidation states close to zero or lower and uranyl was found to be largely reduced to U(IV). The near simultaneous reduction of uranyl was found to greatly enhance the rate of selenate reduction. These findings suggest that the presence of uranyl being reduced by an iron surface could substantially enhance the rate of reduction of selenate under anoxic conditions relevant for a repository.

  14. Anaerobic acclimation in Chlamydomonas reinhardtii: anoxic gene expression, hydrogenase induction, and metabolic pathways.

    PubMed

    Mus, Florence; Dubini, Alexandra; Seibert, Michael; Posewitz, Matthew C; Grossman, Arthur R

    2007-08-31

    Both prokaryotic and eukaryotic photosynthetic microbes experience conditions of anoxia, especially during the night when photosynthetic activity ceases. In Chlamydomonas reinhardtii, dark anoxia is characterized by the activation of an extensive set of fermentation pathways that act in concert to provide cellular energy, while limiting the accumulation of potentially toxic fermentative products. Metabolite analyses, quantitative PCR, and high density Chlamydomonas DNA microarrays were used to monitor changes in metabolite accumulation and gene expression during acclimation of the cells to anoxia. Elevated levels of transcripts encoding proteins associated with the production of H2, organic acids, and ethanol were observed in congruence with the accumulation of fermentation products. The levels of over 500 transcripts increased significantly during acclimation of the cells to anoxic conditions. Among these were transcripts encoding transcription/translation regulators, prolyl hydroxylases, hybrid cluster proteins, proteases, transhydrogenase, catalase, and several putative proteins of unknown function. Overall, this study uses metabolite, genomic, and transcriptome data to provide genome-wide insights into the regulation of the complex metabolic networks utilized by Chlamydomonas under the anaerobic conditions associated with H2 production. PMID:17565990

  15. Alternate anoxic/aerobic operation for nitrogen removal in a membrane bioreactor for municipal wastewater treatment.

    PubMed

    Guglielmi, G; Andreottola, G

    2011-01-01

    A large pilot-scale membrane bioreactor (MBR) with a conventional denitrification/nitrification scheme for municipal wastewater treatment has been run for one year under two different aeration strategies in the oxidation/nitrification compartment. During the first five months air supply was provided according to the dissolved-oxygen set-point and the system run as a conventional predenitrification MBR; then, an intermittent aeration strategy based on effluent ammonia nitrogen was adopted in the aerobic compartment in order to assess the impact on process performances in terms of N and P removal, energy consumption and sludge reduction. The experimental inferences show a significant improvement of the effluent quality as COD and total nitrogen, both due to a better utilization of the denitrification potential which is a function of the available electron donor (biodegradable COD) and electron acceptor (nitric nitrogen); particularly, nitrogen removal increased from 67% to 75%. At the same time, a more effective biological phosphorus removal was observed as a consequence of better selection of denitrifying phosphorus accumulating organisms (dPAO). The longer duration of anoxic phases also reflected in a lower excess sludge production (12% decrease) compared with the standard pre-denitrification operation and in a decrease of energy consumption for oxygen supply (about 50%). PMID:22335118

  16. Formation of methane and carbon dioxide from dimethylselenide in anoxic sediments and by a methanogenic bacterium

    USGS Publications Warehouse

    Oremland, Ronald S.; Zehr, Jon P.

    1986-01-01

    Anaerobic San Francisco Bay salt marsh sediments rapidly metabolized [14C]dimethylselenide (DMSe) to 14CH4 and 14CO2. Addition of selective inhibitors (2-bromoethanesulfonic acid or molybdate) to these sediments indicated that both methanogenic and sulfate-respiring bacteria could degrade DMSe to gaseous products. However, sediments taken from the selenium-contaminated Kesterson Wildlife Refuge produced only 14CO2 from [14C]DMSe, implying that methanogens were not important in the Kesterson samples. A pure culture of a dimethylsulfide (DMS)-grown methylotrophic methanogen converted [14C]DMSe to 14CH4 and14CO2. However, the organism could not grow on DMSe. Addition of DMS to either sediments or the pure culture retarded the metabolism of DMSe. This effect appeared to be caused by competitive inhibition, thereby indicating a common enzyme system for DMS and DMSe metabolism. DMSe appears to be degraded as part of the DMS pool present in anoxic environments. These results suggest that methylotrophic methanogens may demethylate methylated forms of other metals and metalloids found in nature.

  17. Influence of green waste compost on azimsulfuron dissipation and soil functions under oxic and anoxic conditions.

    PubMed

    García-Jaramillo, M; Cox, L; Hermosín, M C; Cerli, C; Kalbitz, K

    2016-04-15

    Concerns have been raised over the sustainability of intensive rice cultivation, where the use of chemical fertilizers and pesticides has been associated with numerous environmental problems. The objective of this study was to test the effect of the herbicide azimsulfuron on important soil functions as affected by amendment with a byproduct of the olive oil industry. Soil was collected from a Mediterranean rice field. Part of it was amended with alperujo compost (AC). Amended and unamended soils were incubated for 43days in presence or not of azimsulfuron, under anoxic-flooded (AF) and oxic-unflooded (OU) conditions. We monitored the dissipation of the herbicide azimsulfuron, C mineralization, soil microbial biomass (SMB) and dissolved organic carbon (DOC) content and its nature. Under AF conditions, the application of compost produced an increase in the dissipation of the herbicide (up to 12.4%). It was related with the higher DOC content, 4 times higher than under OU conditions. Though increases in carbon turnover (under AF and OU conditions) and reduction of SMBC after herbicide application (only under AF conditions) were observed, the differences were not statistically significant. The application of this organic amendment is presented as an efficient management strategy to increase C turnover in agricultural soils and reduce some of the negative effects derived from the application of azimsulfuron under flooded conditions. PMID:26849340

  18. Effect of substrate availability on nitrous oxide production by deammonification processes under anoxic conditions

    PubMed Central

    Schneider, Yvonne; Beier, Maike; Rosenwinkel, Karl‐Heinz

    2012-01-01

    Summary Due to its high global warming potential, nitrous oxide (N2O) emissions from wastewater treatment processes have recently received a high degree of attention. Nevertheless, there is still a lack of information regarding the microbiological processes leading to N2O production. In this study, two lab‐scale sequencing batch reactors were operated with deammonification biomass to investigate the role of denitrification and the influence of substrate availability regarding N2O formation during the anoxic phase of deammonification. Three different operational phases were established: within the first phase conversion by anammox was favoured and after a transition phase, denitrification activity was promoted. Low nitrous oxide production was observed during stable operation aiming for anammox conversion. Pulsed inflow of the wastewater containing ammonium (NH4+) and nitrite (NO2‐) led to increased N2O production rates. Within the period of denitrification as dominating nitrogen conversion process, the nitrous oxide concentration level was higher during continuous inflow conditions, but the reaction to pulsed inflow was less pronounced. The results indicated that denitrification was responsible for N2O formation from the deammonification biomass. Operational settings to achieve suppression of denitrification processes to a large extend were deducted from the results of the experiments. PMID:22296600

  19. Effect of substrate availability on nitrous oxide production by deammonification processes under anoxic conditions.

    PubMed

    Schneider, Yvonne; Beier, Maike; Rosenwinkel, Karl-Heinz

    2012-05-01

    Due to its high global warming potential, nitrous oxide (N(2)O) emissions from wastewater treatment processes have recently received a high degree of attention. Nevertheless, there is still a lack of information regarding the microbiological processes leading to N(2)O production. In this study, two lab-scale sequencing batch reactors were operated with deammonification biomass to investigate the role of denitrification and the influence of substrate availability regarding N(2)O formation during the anoxic phase of deammonification. Three different operational phases were established: within the first phase conversion by anammox was favoured and after a transition phase, denitrification activity was promoted. Low nitrous oxide production was observed during stable operation aiming for anammox conversion. Pulsed inflow of the wastewater containing ammonium (NH(4)(+)) and nitrite (NO(2)(-)) led to increased N(2)O production rates. Within the period of denitrification as dominating nitrogen conversion process, the nitrous oxide concentration level was higher during continuous inflow conditions, but the reaction to pulsed inflow was less pronounced. The results indicated that denitrification was responsible for N(2)O formation from the deammonification biomass. Operational settings to achieve suppression of denitrification processes to a large extend were deducted from the results of the experiments. PMID:22296600

  20. Environmental magnetism of the Toarcian Oceanic Anoxic Event at Peniche (Portugal)

    NASA Astrophysics Data System (ADS)

    Font, Eric; Vitor Duarte, Luis; Adatte, Thierry; Mirão, José

    2016-04-01

    The Pliensbachian-Toarcian section of Peniche has been recently selected as the global stratotype section and point for this time interval. It represents one of the best examples of the record of the oceanic anoxic event (OAE) in the world. Here we conducted a detailed a magnetostratigraphic and environmental study in order to improve the time-scale calibration and to provide new magnetic markers for period of oceanic anoxia recorded in marine sediments. Our results show that the magnetic signal is carried by very low coercive magnetic minerals and exhibit unstable and unreliable data for magnetostratigraphic investigation. In counterpart, bulk magnetic properties (magnetic susceptibility, isothermal remanent magnetization curves, etc) coupled to Scanning Electron Microscopy (SEM) show a striking negative correlation with carbonate content and 13DC previously published in the literature. Particularly, the most pronounced negative C isotopic composition of the OAE interval correlates with high magnetic susceptibility values. SEM-EDS analysis show that the strata featured by high MS values contain ubiquitous pyrite and greigite framboids. These insights provide new markers to identify the magnetic signature of OAE in the marine record. Funded by IDL (FCT UID/GEO/50019/2013)

  1. Reduction in neural performance following recovery from anoxic stress is mimicked by AMPK pathway activation.

    PubMed

    Money, Tomas G A; Sproule, Michael K J; Hamour, Amr F; Robertson, R Meldrum

    2014-01-01

    Nervous systems are energetically expensive to operate and maintain. Both synaptic and action potential signalling require a significant investment to maintain ion homeostasis. We have investigated the tuning of neural performance following a brief period of anoxia in a well-characterized visual pathway in the locust, the LGMD/DCMD looming motion-sensitive circuit. We hypothesised that the energetic cost of signalling can be dynamically modified by cellular mechanisms in response to metabolic stress. We examined whether recovery from anoxia resulted in a decrease in excitability of the electrophysiological properties in the DCMD neuron. We further examined the effect of these modifications on behavioural output. We show that recovery from anoxia affects metabolic rate, flight steering behaviour, and action potential properties. The effects of anoxia on action potentials can be mimicked by activation of the AMPK metabolic pathway. We suggest this is evidence of a coordinated cellular mechanism to reduce neural energetic demand following an anoxic stress. Together, this represents a dynamically-regulated means to link the energetic demands of neural signaling with the environmental constraints faced by the whole animal. PMID:24533112

  2. No support for widespread surface ocean acidification during Oceanic Anoxic Event 1a

    NASA Astrophysics Data System (ADS)

    Naafs, B. D.; Castro, J. M.; De Gea, G. A.; Quijano, M. L.; Schmidt, D. N.; Pancost, R. D.

    2014-12-01

    Various studies suggested that changes in morphology and the demise of calcareous nannoplankton around Cretaceous Oceanic Anoxic Event (OAE) 1a were the result of large-scale (surface) ocean acidification caused by a substantial input of CO2. However, the link between extinction, changes in morphology, calcification crisis and surface ocean acidification is heavily debated. Crucially the relative timing, magnitude and duration of CO2 input during OAE 1a and hence potential to change surface ocean pH and calcite saturation state (Ω) are unconstraint. Here we provide the first high-resolution record of atmospheric CO2 across OAE 1a that depicts the often-inferred increase and decrease in pCO2. Crucially, we show that the initial increase in pCO2 was a gradual and sustained process that lasted at least 100 kyr. Earth system modeling indicates that over such timescales buffering of ocean chemistry by dissolution of deep-sea carbonates and weathering on land prevent surface ocean acidification. Widespread surface ocean acidification could therefore not have occurred during OAE 1a. Our results challenge recent suggestion of widespread ocean acidification across OAE 1a and highlight that the currently observed and further predicted anthropogenic decrease in surface ocean pH and Ω is extremely rare if not unique within the geological record.

  3. Pathway of nitrous oxide consumption in isolated Pseudomonas stutzeri strains under anoxic and oxic conditions.

    PubMed

    Desloover, Joachim; Roobroeck, Dries; Heylen, Kim; Puig, Sebastià; Boeckx, Pascal; Verstraete, Willy; Boon, Nico

    2014-10-01

    The microbial consumption of nitrous oxide (N2O) has gained great interest since it was revealed that this process could mitigate the greenhouse effect of N2O. The consumption of N2O results from its reduction to dinitrogen gas (N2) as part of the denitrification process. However, there is ongoing debate regarding an alternative pathway, namely reduction of N2O to NH4(+), or assimilatory N2O consumption. To date, this pathway is poorly investigated and lacks unambiguous evidence. Enrichment of denitrifying activated sludge using a mineral nitrogen-free medium rendered a mixed culture capable of anoxic and oxic N2O consumption. Dilution plating, isolation and deoxyribonucleic acid fingerprinting identified a collection of Pseudomonas stutzeri strains as dominant N2O consumers in both anaerobic and aerobic enrichments. A detailed isotope tracing experiment with a Pseudomonas stutzeri isolate showed that consumption of N2O via assimilatory reduction to NH4(+) was absent. Conversely, respiratory N2O reduction was directly coupled to N2 fixation. PMID:24447520

  4. Modeling simultaneous carbon and nitrogen removal (SCNR) in anaerobic/anoxic reactor treating domestic wastewater.

    PubMed

    Mendes, Carlos; Esquerre, Karla; Queiroz, Luciano Matos

    2016-07-15

    This paper presents a mathematical model based on the Anaerobic Digestion Model No. 1 (ADM1) to simulate the effects of nitrate concentration and hydraulic retention time (HRT) on the simultaneous carbon and nitrogen removal (SCNR) in anaerobic/anoxic reactor treating domestic wastewater. The model was calibrated using previously published experimental data obtained from anaerobic batch tests for different COD/ [Formula: see text] ratios. Model simulations were performed to predict the SCNR in a completely mixed reactor (CSTR) operating under mesophilic conditions (35 °C). Six different scenarios were evaluated to investigate the performance of the SCNR based on typical influent characteristics of domestic wastewater. The variables analyzed were chemical oxygen demand (COD) removal, nitrate concentration, methane production, nitrogen gas, volatile fatty acids (VFA) concentration, pH and percentage of COD used by the denitrifying and methanogenic microorganisms. The HRT was decreased stepwise from 15 to 4 h. The results indicate that Scenario (S5) with a COD/ [Formula: see text] ratio equal to 10 and an HRT equal to 15 h ensures the occurrence of the stable SCNR. Furthermore, the accumulation of denitrification intermediates and a significant reduction in the biogas production when the organic matter is limited was verified. PMID:27088208

  5. Nutrient removal and phosphorus recovery performances of a novel anaerobic-anoxic/nitrifying/induced crystallization process.

    PubMed

    Shi, Jing; Lu, Xiwu; Yu, Ran; Zhu, Wentao

    2012-10-01

    An anaerobic-anoxic/nitrifying (A(2)N) two sludge process coupled with induced crystallization (IC) called A(2)N-IC process was developed for wastewater nutrient removal and phosphorus recovery. The performances of A(2)N-IC process in comparison with A(2)N process at different COD to phosphorus (COD/P) feeding ratios were investigated. The results indicated that A(2)N-IC achieved not only high and stable nutrient removal but also phosphorus recovery. Calcium phosphorus crystals were formed in the crystallization reactor in A(2)N-IC. Moreover, the incorporation of chemical induced crystallization improved biological phosphorus removal. In A(2)N-IC process, phosphorus removal efficiency was consistently maintained at 99.2%, whereas in A(2)N it decreased from 93.0% to 65.7% with the decrease of feeding COD/P ratio. The COD and ammonia removal efficiencies were regardless of feeding COD/P ratio in the two processes. PMID:22858484

  6. Late Jurassic ocean anoxic event: evidence from voluminous sulphide deposition and preservation in the Panthalassa

    PubMed Central

    Nozaki, Tatsuo; Kato, Yasuhiro; Suzuki, Katsuhiko

    2013-01-01

    The historically productive copper-bearing Besshi-type sulphide deposits in the Japanese accretionary complex were formed as volcanogenic massive sulphide deposits on the deep-sea floor of the Panthalassa Ocean. Here we report that eleven typical Besshi-type deposits yielded Re-Os isochron ages around 150 Ma (148.4 ± 1.4 Ma from the composite isochron) in Late Jurassic time. This date coincides with the lowest marine 87Sr/86Sr ratio and highest atmospheric CO2 concentration of the past 300 million years. We infer that intense mid-ocean ridge hydrothermal and volcanic activity in the Late Jurassic produced huge sulphide deposits and large emissions of CO2 gas, leading to global warming and a stratified Panthalassa Ocean with anoxic deep seas that favored preservation of sulphides in the pelagic environment. The emergence of ocean anoxia triggered by seafloor volcanism is also consistent with a positive δ13C excursion and widespread deposition of petroleum source rocks and black shales. PMID:23712471

  7. Changes in calcareous nannoplankton calcification during the latest Cenomanian Oceanic Anoxic Event 2 and similarity with other Cretaceous Oceanic Anoxic Events

    NASA Astrophysics Data System (ADS)

    Faucher, Giulia; Erba, Elisabetta; Bottini, Cinzia

    2016-04-01

    The Cenomanian has been characterized by greenhouse climate conditions and profound environmental perturbations, including the latest Cenomanian Oceanic Anoxic Event 2 (OAE 2), an episode of widespread organic matter burial in oxygen-depleted oceans. OAE 2 is thought to be related to the emplacement of the Caribbean Plateau which probably introduced in the atmosphere a large amount of CO2 with consequent impact on biota, climate and ocean chemistry. The perturbation of the carbon cycle is reflected in the carbon isotopic record that evidences a positive shift at the OAE 2 onset and subsequent C-isotopic peaks. The aim of this study is the identification of possible changes in coccolith size/shape as a response to paleoenvironmental perturbations associated with OAE 2. Biometric analyses were performed on selected coccolith species (Biscutum constans, Discorhabdus rotatorius, Watznaueria barnesiae and Zeugrabdothus erectus) from five sections spanning the Cenomanian-Turonian boundary interval including OAE 2. The study provided evidence for size fluctuations and dwarfism of B. constans, Z. erectus and D. rotatorius during OAE 2, followed by a recovery at the end of the event. On the contrary, W. barnesiae displays constant sizes through the event. High-resolution investigations showed that B. constans follows the same size trends in all the analysed sections with i) a decrease in size at the OAE 2 onset where an increase in pCO2 is observed, ii) a partial increase in size back to pre-OAE 2 values around the first δ13C peak (peak A), where a decrease in pCO2 concentration is reconstructed iii) and a subsequent more expressed decrease in size reaching minimum values around the δ13C peak B where trace metal abundance has been identified. Small specimens are present till the end of OAE 2 and only after δ13C peak D a partial recovery in size is observed. Nannoplankton dwarfism is here interpreted as forced by rapidly increasing pCO2 during the formation of the

  8. Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway).

    PubMed

    Behnke, Anke; Bunge, John; Barger, Kathryn; Breiner, Hans-Werner; Alla, Victoria; Stoeck, Thorsten

    2006-05-01

    To resolve the fine-scale architecture of anoxic protistan communities, we conducted a cultivation-independent 18S rRNA survey in the superanoxic Framvaren Fjord in Norway. We generated three clone libraries along the steep O(2)/H(2)S gradient, using the multiple-primer approach. Of 1,100 clones analyzed, 753 proved to be high-quality protistan target sequences. These sequences were grouped into 92 phylotypes, which displayed high protistan diversity in the fjord (17 major eukaryotic phyla). Only a few were closely related to known taxa. Several sequences were dissimilar to all previously described sequences and occupied a basal position in the inferred phylogenies, suggesting that the sequences recovered were derived from novel, deeply divergent eukaryotes. We detected sequence clades with evolutionary importance (for example, clades in the euglenozoa) and clades that seem to be specifically adapted to anoxic environments, challenging the hypothesis that the global dispersal of protists is uniform. Moreover, with the detection of clones affiliated with jakobid flagellates, we present evidence that primitive descendants of early eukaryotes are present in this anoxic environment. To estimate sample coverage and phylotype richness, we used parametric and nonparametric statistical methods. The results show that although our data set is one of the largest published inventories, our sample missed a substantial proportion of the protistan diversity. Nevertheless, statistical and phylogenetic analyses of the three libraries revealed the fine-scale architecture of anoxic protistan communities, which may exhibit adaptation to different environmental conditions along the O(2)/H(2)S gradient. PMID:16672511

  9. Growth of Serratia liquefaciens under 7 mbar, 0°C, and CO2-Enriched Anoxic Atmospheres

    PubMed Central

    Ulrich, Richard; Berry, Bonnie J.; Nicholson, Wayne L.

    2013-01-01

    Abstract Twenty-six strains of 22 bacterial species were tested for growth on trypticase soy agar (TSA) or sea-salt agar (SSA) under hypobaric, psychrophilic, and anoxic conditions applied singly or in combination. As each factor was added to multi-parameter assays, the interactive stresses decreased the numbers of strains capable of growth and, in general, reduced the vigor of the strains observed to grow. Only Serratia liquefaciens strain ATCC 27592 exhibited growth at 7 mbar, 0°C, and CO2-enriched anoxic atmospheres. To discriminate between the effects of desiccation and hypobaria, vegetative cells of Bacillus subtilis strain 168 and Escherichia coli strain K12 were grown on TSA surfaces and simultaneously in liquid Luria-Bertani (LB) broth media. Inhibition of growth under hypobaria for 168 and K12 decreased in similar ways for both TSA and LB assays as pressures were reduced from 100 to 25 mbar. Results for 168 and K12 on TSA and LB are interpreted to indicate a direct low-pressure effect on microbial growth with both species and do not support the hypothesis that desiccation alone on TSA was the cause of reduced growth at low pressures. The growth of S. liquefaciens at 7 mbar, 0°C, and CO2-enriched anoxic atmospheres was surprising since S. liquefaciens is ecologically a generalist that occurs in terrestrial plant, fish, animal, and food niches. In contrast, two extremophiles tested in the assays, Deinococcus radiodurans strain R1 and Psychrobacter cryohalolentis strain K5, failed to grow under hypobaric (25 mbar; R1 only), psychrophilic (0°C; R1 only), or anoxic (<0.1% ppO2; both species) conditions. Key Words: Habitable zone—Hypobaria—Extremophiles—Special regions—Planetary protection. Astrobiology 13, 115–131. PMID:23289858

  10. Biogenic hydrocarbon gases and sulfate reduction in the Orca Basin brine

    NASA Astrophysics Data System (ADS)

    Wiesenburg, Denis A.; Brooks, James M.; Bernard, Bernie B.

    1985-10-01

    The composition of light hydrocarbon gases in the Orca Basin, an anoxic, hypersaline intraslope depression on the continental slope of the northern Gulf of Mexico, indicates that both methane and ethane are biogenic in nature with a C 1/(C 2 + C 3) ratio of 730 and a δ13C of methane of -73%. relative to the PDB standard. The concentrations of methane (750 mM) and ethane (1300 mM) in the Orca Basin brine are higher than any other marine anoxic basin. These high levels result not from high rates of productivity, but from the long residence time of the brine in the basin, due to its high stability toward mixing with overlying seawater ( Δσ 1/ΔZ = 3.2/m). Both methane and ethane show well mixed distributions in the brine. These distributions probably result from convective mixing of the isohaline brine pool due to normal heat flow from the basin sediments. Methane and ethane maxima above the pycnocline at the brine/seawater interface reflect in situ production and/or consumption in the aerobic water column. Concurrent maxima in suspended particulate material distributions in this region suggest methane may be produced there in anaerobic microenvironments associated with the suspended matter. Reduced rates of anaerobic decomposition (including sulfate reduction) in the brine sediments are inferred from preserved Sargassum fronds in the sediments, vertical sulfate profiles in most cores, and the sediment organic carbon content which is two to three times higher in sediments below the high salinity brine than in the normal Gulf sediments nearby.

  11. OPTIMIZATION OF VOLTAMMETRIC METHODS FOR AN IN SITU DETERMINATION OF TOTAL SULFIDE IN ANOXIC POREWATER USING A MERCURY PLATED GOLD ELECTRODE

    EPA Science Inventory

    Voltammetric methods for determination of total sulfide concentrations in anoxic sediments utilizing a previously described [1] gold-based mercury amalgam microelectrode were optimized. Systematic studies in NaCl (supporting electrolyte) and porewater indicate variations in ionic...

  12. The anoxic stress conditions explored at the nanoscale by atomic force microscopy in highly eutrophic and sulfidic marine lake

    NASA Astrophysics Data System (ADS)

    Marguš, M.; Morales-Reyes, I.; Bura-Nakić, E.; Batina, N.; Ciglenečki, I.

    2015-10-01

    Marine Rogoznica lake (RL), an eutrophic and euxinic environment situated at the eastern Adriatic coast was used as a natural laboratory to test the application of atomic force microscopy (AFM) in combination with the electrochemical and high temperature catalytic oxidation (HTCO) measurements for characterization of water column organic matter (OM) and reduced sulfur species (RSS) in relation to seasonal changes of environmental conditions. Water column of RL was explored at the nanoscale by the AFM during the anoxic holomictic event (S1, October 2011) and stratified winter (S2, January 2012) and spring (S3, May 2012) conditions in the oxic and anoxic water samples. Obtained results from the AFM uphold the electrochemical and HTCO measurements, indicating significant difference in the present type of OM during the holomictic, anoxic stress conditions in comparison to the samples collected during the stratification period. Differences in the OM type were discussed in line with the physical and biological processes that occurred in RL during sampling: mixing processes characterized by fast turnover of water layers and biological activity characterized by low (January 2012) and high (May 2012) primary production of diatoms and zooplankton grazing activities.

  13. Influence of aerobic and anoxic microenvironments on polyhydroxyalkanoates (PHA) production from food waste and acidogenic effluents using aerobic consortia.

    PubMed

    Reddy, M Venkateswar; Mohan, S Venkata

    2012-01-01

    The functional role of aerobic and anoxic microenvironments on polyhydroxyalkanoates (PHA) production using food waste (UFW) and effluents from acidogenic biohydrogen production process (FFW) were studied employing aerobic mixed culture as biocatalyst. Anoxic microenvironment documented higher PHA production, while aerobic microenvironment showed higher substrate degradation. FFW showed higher PHA accumulation (39.6%) than UFW (35.6%) due to ready availability of precursors (fatty acids). Higher fraction of poly-3-hydroxy butyrate (PHB) was observed compared to poly-3-hydroxy valerate (PHV) in the accumulated PHA in the form of co-polymer [P3(HB-co-HV)]. Dehydrogenase, phosphatase and protease enzymatic activities were monitored during process operation. Integration with fermentative biohydrogen production yielded additional substrate degradation under both aerobic (78%) and anoxic (72%) microenvironments apart from PHA production. Microbial community analysis documented the presence of aerobic and facultative organisms capable of producing PHA. Integration strategy showed feasibility of producing hydrogen along with PHA by consuming fatty acids generated during acidogenic process in association with increased treatment efficiency. PMID:22055090

  14. Importance of the autumn overturn and anoxic conditions in the hypolimnion for the annual methane emissions from a temperate lake.

    PubMed

    Encinas Fernández, Jorge; Peeters, Frank; Hofmann, Hilmar

    2014-07-01

    Changes in the budget of dissolved methane measured in a small temperate lake over 1 year indicate that anoxic conditions in the hypolimnion and the autumn overturn period represent key factors for the overall annual methane emissions from lakes. During periods of stable stratification, large amounts of methane accumulate in anoxic deep waters. Approximately 46% of the stored methane was emitted during the autumn overturn, contributing ∼80% of the annual diffusive methane emissions to the atmosphere. After the overturn period, the entire water column was oxic, and only 1% of the original quantity of methane remained in the water column. Current estimates of global methane emissions assume that all of the stored methane is released, whereas several studies of individual lakes have suggested that a major fraction of the stored methane is oxidized during overturns. Our results provide evidence that not all of the stored methane is released to the atmosphere during the overturn period. However, the fraction of stored methane emitted to the atmosphere during overturn may be substantially larger and the fraction of stored methane oxidized may be smaller than in the previous studies suggesting high oxidation losses of methane. The development or change in the vertical extent and duration of the anoxic hypolimnion, which can represent the main source of annual methane emissions from small lakes, may be an important aspect to consider for impact assessments of climate warming on the methane emissions from lakes. PMID:24873684

  15. Bioreduction of U(VI) in groundwater under anoxic conditions from a decommissioned in situ leaching uranium mine.

    PubMed

    Ding, De-xin; Li, Shi-mi; Hu, Nan; Xu, Fei; Li, Guang-yue; Wang, Yong-dong

    2015-04-01

    To determine whether the U(VI) in groundwater under anoxic conditions at a decommissioned in situ leaching (ISL) uranium mine could be bioreduced, groundwater samples containing suspended sediments were taken from the mine, experimental setup was fabricated, and the jar containing the groundwater in the setup was amended with ethanol and incubated under anoxic conditions. The variations of pH, chemical oxygen demand, nitrate, sulfate, U(VI), and dissolved oxygen (DO) concentrations were monitored during the incubation. U(VI) concentration dropped to 0.043 mg/L when the stimulated microorganisms were active, and it then increased to 0.835 mg/L within 10 days after the metabolism of the stimulated microorganisms was inhibited. The DO variation was observed in the amended jar during the incubation, and the metabolism of the stimulated microorganisms was found to affect the DO concentration. Firmicutes were found to be dominant in the sediments in the amended jar through the 16S rRNA pyrosequencing. The results indicate that it is possible to bioreduce U(VI) in the groundwater under anoxic conditions at the decommissioned ISL uranium mine by adding carbon source into it without removing the oxygen from it. PMID:25341364

  16. Nitrogen reduction in wastewater treatment using different anox-circulation flow rates and ethanol as a carbon source.

    PubMed

    Poutiainen, H; Laitinen, S; Pradhan, S; Pessi, M; Heinonen-Tanski, H

    2010-05-01

    We studied the optimization of nitrogen reduction from municipal wastewater in a laboratory-scale modified Ludzack-Ettinger activated sludge wastewater treatment plant (WWTP). The unit consisted of primary denitrification, secondary nitrification, a sludge clarifier and a post-denitrification unit. The process simulates the Kuopio WWTP, which provided the influent utilized. We describe the effect of varying anox-circulation schemes on the nitrogen removal efficiency. We further compare the denitrification efficiencies of ethanol and methanol applied in the post-denitrification unit, and compare the properties and costs of these chemicals as carbon sources. Maximum efficiency of total nitrogen removal (70.8%) was obtained with 256% anox-circulation. The process was, however, not very sensitive, as a wide range of 150-400% of anox-circulations gave good results for nitrogen reduction. The unit achieved high BOD, and COD reductions of wastewater also when nitrogen reduction was moderate. The addition of 40 mg/L/day of ethanol to the post-denitrification tank meant that the nitrate-levels of effluent could be controlled to below 10 mg/L of nitrate nitrogen. Methanol and ethanol were equally effective for denitrification. The use of ethanol instead of methanol could reduce treatment costs by 30% to 0.02 E/m3 of treated wastewater according to 2008 market prices. PMID:20540423

  17. Effect of anoxic/aerobic phase fraction on N2O emission in a sequencing batch reactor under low temperature.

    PubMed

    Hu, Zhen; Zhang, Jian; Xie, Huijun; Li, Shanping; Wang, Jinhe; Zhang, Tingting

    2011-05-01

    Laboratory scale anoxic/aerobic sequencing batch reactor (A/O SBR) was operated around 15°C to evaluate the effect of anoxic/aerobic phase fraction (PF) on N(2)O emission. The ammonia removal exhibited a decrease trend with the increase of PF, while the highest total nitrogen removal was achieved at PF=0.5. Almost all the N(2)O was emitted during the aerobic phase, despite of the PF value. However, the net emission of N(2)O was affected by PF. Under the premise of completely aerobic nitrification, the lowest N(2)O emission was achieved at PF=0.5, with a N(2)O-N conversion rate of 9.8%. At lower PF (PF=0.2), N(2)O emission was stimulated by residual nitrite caused by uncompleted denitrification during the anoxic phase. On the other hand, the exhaustion of the easily degradable carbon was the major cause for the high N(2)O emission at higher PF (PF=0.5). The N(2)O emission increased with the decreasing temperature. The time-weighted N(2)O emission quantity at 15°C was 2.9 times higher than that at 25°C. PMID:21035326

  18. Diphytanyl glycerol ether distributions in sediments of the Orca Basin

    SciTech Connect

    Pease, T.K.; VanVleet, E.S.; Barre, J.S. )

    1992-09-01

    Archaebacterially produced diphytanyl glycerol ether (DPGE) was examined in core sediments from the Orca Basin, an anoxic hypersaline basin in the northwestern Gulf of Mexico, to observe its spatial variability and potential origin. A differential extraction protocol was employed to quantify the isopranyl glycerol ethers associated with unbound, intermediate-bound, and kerogen-bound lipid fractions. Archaebacterial lipids were evident at all depths for the unbound and intermediate-bound fractions. Concentrations of DPGE ranged from 0.51 to 2.91 [mu]g/g dry sediment at the surface and showed secondary maxima deeper in basin sediments. Intermediate-bound DPGE concentrations exhibited an inverse relationship to unbound DPGE concentrations. Kerogen-bound DPGE concentrations were normally below detection limits. Earlier studies describing the general homogeneity of lipid components within the overlying brine and at the brine/seawater interface suggest that the large-scale sedimentary DPGE variations observed in this study result from spatial and temporal variations in in-situ production by methanogenic or extremely halophilic archaebacteria.

  19. Diphytanyl glycerol ether distributions in sediments of the Orca Basin

    NASA Astrophysics Data System (ADS)

    Pease, Tamara K.; Van Vleet, Edward S.; Barre, Jill S.

    1992-09-01

    Archaebacterially produced diphytanyl glycerol ether (DPGE) was examined in core sediments from the Orca Basin, an anoxic hypersaline basin in the northwestern Gulf of Mexico, to observe its spatial variability and potential origin. A differential extraction protocol was employed to quantify the isopranyl glycerol ethers associated with unbound, intermediate-bound, and kerogen-bound lipid fractions. Archaebacterial lipids were evident at all depths for the unbound and intermediate-bound fractions. Concentrations of DPGE ranged from 0.51 to 2.91 μg/g dry sediment at the surface and showed secondary maxima deeper in basin sediments. Intermediate-bound DPGE concentrations exhibited an inverse relationship to unbound DPGE concentrations. Kerogen-bound DPGE concentrations were normally below detection limits. Earlier studies describing the general homogeneity of lipid components within the overlying brine and at the brine/seawater interface suggest that the large-scale sedimentary DPGE variations observed in this study result from spatial and temporal variations in in situ production by methanogenic or extremely halophilic archaebacteria.

  20. Diphytanyl glycerol ether distributions in sediments of the Orca Basin.

    PubMed

    Pease, T K; Van Vleet, E S; Barre, J S

    1992-09-01

    Archaebacterially produced diphytanyl glycerol ether (DPGE) was examined in core sediments from the Orca Basin, an anoxic hypersaline basin in the northwestern Gulf of Mexico, to observe its spatial variability and potential origin. A differential extraction protocol was employed to quantify the isopranyl glycerol ethers associated with unbound, intermediate-bound, and kerogen-bound lipid fractions. Archaebacterial lipids were evident at all depths for the unbound and intermediate-bound fractions. Concentrations of DPGE ranged from 0.51 to 2.91 micrograms/g dry sediment at the surface and showed secondary maxima deeper in basin sediments. Intermediate-bound DPGE concentrations exhibited an inverse relationship to unbound DPGE concentrations. Kerogen-bound DPGE concentrations were normally below detection limits. Earlier studies describing the general homogeneity of lipid components within the overlying brine and at the brine/seawater interface suggest that the large-scale sedimentary DPGE variations observed in this study result from spatial and temporal variations in in situ production by methanogenic or extremely halophilic archaebacteria. PMID:11540108

  1. Reserves in western basins

    SciTech Connect

    Caldwell, R.H.; Cotton, B.W.

    1992-06-01

    This project requires generation of producible tight gas sand reserve estimates for three western basins. The requirement is to perform such reserve estimates using industry accepted practices so that results will have high credibility and acceptance by the oil and gas industry. The ultimate goal of the project is to encourage development of the tight gas formation by industry through reduction of the technical and economic risks of locating, drilling and completing commercial gas wells. The three geological basins selected for study are the Greater Green River Basin, Uinta Basin and Piceance Basin, located in the Colorado, Utah and Wyoming Rocky Mountain region.

  2. Reserves in western basins

    SciTech Connect

    Caldwell, R.H.; Cotton, B.W.

    1992-01-01

    This project requires generation of producible tight gas sand reserve estimates for three western basins. The requirement is to perform such reserve estimates using industry accepted practices so that results will have high credibility and acceptance by the oil and gas industry. The ultimate goal of the project is to encourage development of the tight gas formation by industry through reduction of the technical and economic risks of locating, drilling and completing commercial gas wells. The three geological basins selected for study are the Greater Green River Basin, Uinta Basin and Piceance Basin, located in the Colorado, Utah and Wyoming Rocky Mountain region.

  3. A basin redox transect at the dawn of animal life

    NASA Astrophysics Data System (ADS)

    Sperling, Erik A.; Halverson, Galen P.; Knoll, Andrew H.; Macdonald, Francis A.; Johnston, David T.

    2013-06-01

    Multiple eukaryotic clades make their first appearance in the fossil record between ~810 and 715 Ma. Molecular clock studies suggest that the origin of animal multicellularity may have been part of this broader eukaryotic radiation. Animals require oxygen to fuel their metabolism, and low oxygen levels have been hypothesized to account for the temporal lag between metazoan origins and the Cambrian radiation of large, ecologically diverse animals. Here, paleoredox conditions were investigated in the Fifteenmile Group, Ogilvie Mountains, Yukon, Canada, which hosts an 811 Ma ash horizon and spans the temporal window that captures the inferred origin and early evolution of animals. Iron-based redox proxies, redox-sensitive trace elements, organic carbon percentages and pyrite sulfur isotopes were analyzed in seven stratigraphic sections along two parallel basin transects. These data suggest that for this basin, oxygenated shelf waters overlay generally anoxic deeper waters. The anoxic water column was dominantly ferruginous, but brief periods of euxinia likely occurred. These oscillations coincide with changes in total organic carbon, suggesting euxinia was primarily driven by increased organic carbon loading. Overall, these data are consistent with proposed quantitative constraints on Proterozoic atmospheric oxygen being greater than 1% of modern levels, but less than present levels. Comparing these oxygen levels against the likely oxygen requirements of the earliest animals, both theoretical considerations and the ecology of modern oxygen-deficient settings suggest that the inferred oxygen levels in the mixed layer would not have been prohibitive to the presence of sponges, eumetazoans or bilaterians. Thus the evolution of the earliest animals was probably not limited by the low absolute oxygen levels that may have characterized Neoproterozoic oceans, although these inferred levels would constrain animals to very small sizes and low metabolic rates.

  4. Petroleum geology and resources of the West Siberian Basin, Russia

    USGS Publications Warehouse

    Ulmishek, Gregory F.

    2003-01-01

    The West Siberian basin is the largest petroleum basin in the world covering an area of about 2.2 million km2. The basin occupies a swampy plain between the Ural Mountains and the Yenisey River. On the north, the basin extends offshore into the southern Kara Sea. On the west, north, and east, the basin is surrounded by the Ural, Yenisey Ridge, and Turukhan-Igarka foldbelts that experienced major deformations during the Hercynian tectonic event and the Novaya Zemlya foldbelt that was deformed in early Cimmerian (Triassic) time. On the south, the folded Caledonian structures of the Central Kazakhstan and Altay-Sayan regions dip northward beneath the basin?s sedimentary cover. The basin is a relatively undeformed Mesozoic sag that overlies the Hercynian accreted terrane and the Early Triassic rift system. The basement is composed of foldbelts that were deformed in Late Carboniferous?Permian time during collision of the Siberian and Kazakhstan continents with the Russian craton. The basement also includes several microcontinental blocks with a relatively undeformed Paleozoic sedimentary sequence. The sedimentary succession of the basin is composed of Middle Triassic through Tertiary clastic rocks. The lower part of this succession is present only in the northern part of the basin; southward, progressively younger strata onlap the basement, so that in the southern areas the basement is overlain by Toarcian and younger rocks. The important stage in tectono-stratigraphic development of the basin was formation of a deep-water sea in Volgian?early Berriasian time. The sea covered more than one million km2 in the central basin area. Highly organic-rich siliceous shales of the Bazhenov Formation were deposited during this time in anoxic conditions on the sea bottom. Rocks of this formation have generated more than 80 percent of West Siberian oil reserves and probably a substantial part of its gas reserves. The deep-water basin was filled by prograding clastic clinoforms

  5. Microbial Communities in the Chemocline of a Hypersaline Deep-Sea Basin (Urania Basin, Mediterranean Sea)

    PubMed Central

    Sass, Andrea M.; Sass, Henrik; Coolen, Marco J. L.; Cypionka, Heribert; Overmann, Jörg

    2001-01-01

    The Urania basin is a hypersaline sulfidic brine lake at the bottom of the eastern Mediterranean Sea. Since this basin is located at a depth of ∼3,500 m below the sea surface, it receives only a small amount of phytoplankton organic carbon. In the present study, the bacterial assemblages at the interface between the hypersaline brine and the overlaying seawater were investigated. The sulfide concentration increased from 0 to 10 mM within a vertical interval of 5 m across the interface. Within this chemocline, the total bacterial cell counts and the exoenzyme activities were elevated. Employing 11 cultivation methods, we isolated a total of 70 bacterial strains. The 16S ribosomal DNA sequences of 32 of the strains were identical to environmental sequences detected in the chemocline by culture-independent molecular methods. These strains were identified as flavobacteria, Alteromonas macleodii, and Halomonas aquamarina. All 70 strains could grow chemoorganoheterotrophically under oxic conditions. Sixty-six strains grew on peptone, casein hydrolysate, and yeast extract, whereas only 15 strains did not utilize polymeric carbohydrates. Twenty-one of the isolates could grow both chemoorganotrophically and chemolithotrophically. While the most probable numbers in most cases ranged between 0.006 and 4.3% of the total cell counts, an unsually high value of 54% was determined above the chemocline with media containing amino acids as the carbon and energy source. Our results indicate that culturable bacteria thriving at the oxic-anoxic interface of the Urania basin differ considerably from the chemolithoautotrophic bacteria typical of other chemocline habitats. PMID:11722884

  6. Phosphorus burial in Cariaco Basin sediments through the last glacial - interglacial transition

    NASA Astrophysics Data System (ADS)

    Whitehill, A. R.; Ruttenberg, K. C.; Briggs, R.; Lyons, T. W.; Colman, A. S.

    2008-12-01

    On geologic timescales, phosphate availability in the oceans limits global organic carbon burial rates in marine sediments. The phosphate inventory of the oceans is strongly influenced by early diagenetic regeneration of phosphate in marine sediments. Oxic conditions are generally thought to favor phosphate retention in marine sediments, whereas anoxic conditions permit a greater fraction of reactive particulate phosphate to be released to pore waters and return to the overlying water column. Feedbacks with the marine phosphorus cycle can act to stabilize ocean anoxic events and control atmospheric oxygen concentrations. We analyzed phosphorus phase associations in Cariaco Basin sediments through the transition from oxidized sediments that characterized deposition during the last glacial period through laminated anoxic sediments that characterize Holocene deposition. We have used a sequential extraction technique (SEDEX) on samples from ODP core 1002 in order to target adsorbed phosphate, ferric iron associated P, authigenic and biogenic P phases, detrital apatite, and organic P. Preliminary results show a correlation between total organic carbon and reactive phosphate in the sediments. The anoxic sediments are dominated by the authigenic and biogenic P pool, which typically represents 60-80% of the total P. These values, coupled with high C-org/P-org (> 600) and C-org/P- reactive (> 300) ratios, suggest post-depositional redistribution of P from organic matter to authigenic carbonate fluorapatite and substantial regeneration of phosphate to the overlying water column. C/P ratios are much lower in the oxic sediments, though the authigenic and biogenic P pool remains quantitatively most significant. Throughout the core, changes in C:P ratios and the concentration of authigenic P appear to correlate with changes in the Mo/Al ratio, further linking P burial and diagenesis to water column anoxia.

  7. Fossil proxies of near-shore sea surface temperatures and seasonality from the late Neogene Antarctic shelf.

    PubMed

    Clark, Nicola A; Williams, Mark; Hill, Daniel J; Quilty, Patrick G; Smellie, John L; Zalasiewicz, Jan; Leng, Melanie J; Ellis, Michael A

    2013-08-01

    We evaluate the available palaeontological and geochemical proxy data from bivalves, bryozoans, silicoflagellates, diatoms and cetaceans for sea surface temperature (SST) regimes around the nearshore Antarctic coast during the late Neogene. These fossils can be found in a number of shallow marine sedimentary settings from three regions of the Antarctic continent, the northern Antarctic Peninsula, the Prydz Bay region and the western Ross Sea. Many of the proxies suggest maximum spring-summer SSTs that are warmer than present by up to 5 °C, which would result in reduced seasonal sea ice. The evidence suggests that the summers on the Antarctic shelf during the late Neogene experienced most of the warming, while winter SSTs were little changed from present. Feedbacks from changes in summer sea ice cover may have driven much of the late Neogene ocean warming seen in stratigraphic records. Synthesized late Neogene and earliest Quaternary Antarctic shelf proxy data are compared to the multi-model SST estimates of the Pliocene Model Intercomparison Project (PlioMIP) Experiment 2. Despite the fragmentary geographical and temporal context for the SST data, comparisons between the SST warming in each of the three regions represented in the marine palaeontological record of the Antarctic shelf and the PlioMIP climate simulations show a good concordance. PMID:23828612

  8. Detecting Land-based Signals in the Near-shore Zone of Lake Erie During Summer 2009

    EPA Science Inventory

    We conducted two styles of nearshore surveys in Lake Erie during August to mid-September 2009. The first used a spatially-balanced probability survey (SBS) design to establish discrete stations within a GIS-defined target populationthe nearshore zone extending approximately 5 km...

  9. Investigation of Wave Energy Converter Effects on Near-shore Wave Fields: Model Generation Validation and Evaluation - Kaneohe Bay HI.

    SciTech Connect

    Roberts, Jesse D.; Chang, Grace; Jones, Craig

    2014-09-01

    The numerical model, SWAN (Simulating WAves Nearshore) , was used to simulate wave conditions in Kaneohe Bay, HI in order to determine the effects of wave energy converter ( WEC ) devices on the propagation of waves into shore. A nested SWAN model was validated then used to evaluate a range of initial wave conditions: significant wave heights (H s ) , peak periods (T p ) , and mean wave directions ( MWD) . Differences between wave height s in the presence and absence of WEC device s were assessed at locations in shore of the WEC array. The maximum decrease in wave height due to the WEC s was predicted to be approximately 6% at 5 m and 10 m water depths. Th is occurred for model initiation parameters of H s = 3 m (for 5 m water depth) or 4 m (10 m water depth) , T p = 10 s, and MWD = 330deg . Subsequently, bottom orbital velocities were found to decrease by about 6%.

  10. PHOTO-INDUCED POLYCYCLIC AROMATIC HYDROCARBON TOXIC POTENTIALS OF NEAR SHORE LARVAL FISH HABITAT IN THE GREAT LAKES, USA

    EPA Science Inventory

    Photo-induced toxicity (PIT) of polycyclic aromatic hydrocarbons (PAH) has been documented in laboratory studies for both invertebrate and vertebrate aquatic organisms. PIT has not been verified in field studies for larval fish to date. Filtered water samples and larval fish were...

  11. Toward the discrimination of fine-grained ferrimagnets by magnetic measurements in lake and near-shore marine sediments

    NASA Astrophysics Data System (ADS)

    Oldfield, F.

    1994-05-01

    The magnetic properties of low field susceptibility (chi), frequency dependent susceptibility (Chi(sub fd)), and susceptibility of anhysteretic remanent magnetisation (Chi(sub ARM)) are used to define sets of natural soil and sediment samples within which, by the criteria of King et al. (1982) and Maher (1988), the modal ferrimagnetic grain diameter is less than approximately 0.07 - 0.1 micrometers. Within this sample set, two distinct groups with low and high values, respectively, for the quotients chi(sub ARM)/chi and chi(sub arm)/chi(sub fd) are defined. The first group includes sediment samples from sites where published studies propose a detrital origin for the fine-grained ferrimagnetic content. Where catchment samples are available for comparison, they fall within the same envelope, as do clays from palaeosol samples within Chinese loess. This envelope of low quotient values also overlaps with the values for the fine grained synthetic magnetite samples within Maher's (1988) New MT series. The high quotient envelope of values includes sediments from the Adriatic Sea and clays from saltmarsh and shallow water marine sediments in NW Britain. In these cases, no catchment source is postulated for the fine-grained magnetite. The size range of magnetite in this set appears to be almost exclusively stable single domain (SSD), and a bacterial origin seems likely. Sample sets from estuarine environments between river inflow sites and the open sea show intermediate values which, in the case of the Potomac, are ordered by distance down river. Although at this stage, magnetic measurements alone cannot discriminate between bacterial and fine-grained detrital ferrimagnets in sediments, they hold out some promise of doing so provided the distinctions proposed here can be substantiated by transmission electron microscopy.

  12. Interactions of aquaculture, marine coastal ecosystems, and near-shore waters: A bibliography. Bibliographies and literature of agriculture (Final)

    SciTech Connect

    Hanfman, D.T.; Coleman, D.E.; Tibbitt, S.J.

    1991-01-01

    The bibliography contains selected literature citations on the interactions of aquaculture and marine coastal ecosystems. The focus is on aquaculture effluents and their impact on marine coastal ecosystems and waterways as well as the impact of pollutants on aquaculture development. Factors affecting these issues include domestic and industrial wastes, thermal discharges, acid rain, heavy metals, oil spills, and microbial contamination of marine waters and aquatic species. Coastal zone management, environmenal impact of aquaculture, and water quality issues are also included in the bibliography.

  13. Surficial substrates and bathymetry of five historical lake trout spawning reefs in near-shore waters of the Great Lakes

    USGS Publications Warehouse

    Edsall, Thomas A.; Brown, Charles L.; Kennedy, Gregory W.; French, John R. P., III

    1992-01-01

    The reestablishment of self-sustaining stocks of lake trout (Salvelinus namaycush) in the lower four Great Lakes has been substantially impeded because planted fish do not produce enough progeny that survive and reproduce. The causes for this failure are unknown, but many historical spawning sites of lake trout have been degraded by human activities and can no longer produce viable swim-up fry. In this study, we used side-scan sonar and an underwater video camera to survey, map, and evaluate the sustainability of one reef in each of the five Great Lakes for lake trout spawning and fry production. At four of the reef sites, we found good-to-excellent substrate for spawning and fry production by the shallow-water strains of lake trout that are now being planted. These substrates were in water 6-22 m deep and were composed largely of rounded or angular rubble and cobble. Interstitial spaces in these substrates were 20 cm or deeper and would protect naturally spawned eggs and fry from predators, ice scour, and buffeting by waves and currents. Subsequent studies of egg survival by other researchers confirmed our evaluation that the best substrates at two of these sites still have the potential to produce viable swim-up fry.

  14. Near-shore sand thickness and stratigraphy mapping with a submerged GPR antenna system; southeast Lake Michigan

    SciTech Connect

    Sauck, W.A.; Seng, D.L. )

    1994-04-01

    Twenty-one shore perpendicular profiles, spaced at nominal 5 km intervals, have been surveyed with a bottom-sled mounted Ground Penetrating Radar (GPR) antenna system between Benton Harbor, MI, and Gary, IN. Either a commercial 500 MHz or a custom 145 MHz antenna were used. The bottom sled also carried an upward looking SONAR transducer to give concurrent water depth, and was towed from the beach out to water depths of 6 meters or more, usually ending about 500 meters from shore. Bedding structures and details are clearly visible on the GPR sections within the sand bars and sand blankets. Bottom morphology and the nature of the sand bodies change markedly from the NE to the SW limits of the survey area. At the NE profiles there are multiple, pronounced (or high amplitude) offshore bars, with the substrate (glacial clay, shale, or silty sand) exposed or nearly exposed between bars. Internal structure is generally foreset or cross bedding in the bars. Sand was thin or missing immediately to the Sw of several other jetty structures in addition to the one at St. Joseph. In general the sand bars became much less pronounced to the SW, and internal structures were dominated by parallel bedding and subtle angular unconformities. Near St. Joseph, the exposed substrate is almost certainly being eroded, even to water depths as great as 6 meters. Thus, the equilibrium bottom profile continues to deepen shoreward, causing the continued threat of bluff erosion in spite of annual beach nourishment efforts at this site.

  15. The use of the marine gastropod, Cellana tramoserica, as a biomonitor of metal contamination in near shore environments.

    PubMed

    Maher, W; Maher, N; Taylor, A; Krikowa, F; Ubrihien, R; Mikac, K M

    2016-07-01

    The use of the marine gastropod, Cellana tramoserica, as a biomonitor of metal exposure was investigated. The factors influencing metal concentrations, such as mass, gender, substrate, shoreline position and temporal variation were examined. Tissue metal concentrations were mostly found to be independent of mass and gender. When metal concentrations were significantly correlated with mass, correlations were low and explained little variability. The underlying substrate and position in the littoral zone had only a small influence on metal concentrations. Variation between individuals, inherent variability due to genetic variability, was the most significant contribution to the overall variation in metal concentrations, resulting in positive skewing of population distributions. The mean metal concentrations varied temporally; metal masses were relatively constant with fluctuations in metal concentrations related to fluctuations in metal body burdens. The populations from a metal-contaminated site had significantly higher tissue Cu, Zn, As and Pb concentrations than the populations from relatively uncontaminated locations. C. tramoserica therefore can be considered to be a net accumulator of metals. A sample number of >10 is required to detect changes of 25 % from the mean concentrations at uncontaminated locations. This species meets the requirements of a suitable biomonitor for metal contaminants in the environment i.e. hardy, sessile, widespread, sufficient tissue mass and a metal accumulator. As the measurement of metal concentrations in C. tramesoria were influenced by substrate and shore position and, sometimes, mass, sites with similar substrates and organisms of similar mass and shoreline position should be chosen for comparison. When comparing metal concentrations in gastropods from different locations, they should be collected over the same period to minimise variability due to mass differences, spawning and other seasonal/temporal effects. PMID:27262969

  16. Fossil proxies of near-shore sea surface temperatures and seasonality from the late Neogene Antarctic shelf

    NASA Astrophysics Data System (ADS)

    Clark, Nicola A.; Williams, Mark; Hill, Daniel J.; Quilty, Patrick G.; Smellie, John L.; Zalasiewicz, Jan; Leng, Melanie J.; Ellis, Michael A.

    2013-08-01

    We evaluate the available palaeontological and geochemical proxy data from bivalves, bryozoans, silicoflagellates, diatoms and cetaceans for sea surface temperature (SST) regimes around the nearshore Antarctic coast during the late Neogene. These fossils can be found in a number of shallow marine sedimentary settings from three regions of the Antarctic continent, the northern Antarctic Peninsula, the Prydz Bay region and the western Ross Sea. Many of the proxies suggest maximum spring-summer SSTs that are warmer than present by up to 5 °C, which would result in reduced seasonal sea ice. The evidence suggests that the summers on the Antarctic shelf during the late Neogene experienced most of the warming, while winter SSTs were little changed from present. Feedbacks from changes in summer sea ice cover may have driven much of the late Neogene ocean warming seen in stratigraphic records. Synthesized late Neogene and earliest Quaternary Antarctic shelf proxy data are compared to the multi-model SST estimates of the Pliocene Model Intercomparison Project (PlioMIP) Experiment 2. Despite the fragmentary geographical and temporal context for the SST data, comparisons between the SST warming in each of the three regions represented in the marine palaeontological record of the Antarctic shelf and the PlioMIP climate simulations show a good concordance.

  17. Surface sediment properties and heavy metal pollution assessment in the near-shore area, north Shandong Peninsula.

    PubMed

    Xu, Gang; Pei, Shaofeng; Liu, Jian; Gao, Maosheng; Hu, Gang; Kong, Xianghuai

    2015-06-15

    Samples of surface sediment were collected off the north Shandong Peninsula for grain size and element analyses. Based on the grain size analysis, the surface sediments were dominated by silt and sand, with a small portion of clay, and were probably from the coastal erosion of the Shandong Peninsula. The spatial distribution patterns of the heavy metals were primarily controlled by the sediment types. The geo-accumulation indexes suggest that there was no Cu, Zn and Cr pollution in the study area; Pb and Cd contaminations appeared only at a few stations, while As pollution was distributed widely. The enrichment factors indicated that Cu, Zn and Cr were primarily from terrigenous materials. By contrast, Cd, Pb and As, and especially Cd and As, were probably largely provided by anthropogenic sources. Due to the dilution of coarse-grained matters, there was no contamination at some of the stations at which the influence of human activities was obvious. PMID:25913796

  18. Carbon dioxide production from peatland soil profiles: The influence of temperature, oxic/anoxic conditions and substrate

    SciTech Connect

    Scanlon, D.; Moore, T.

    2000-02-01

    The authors incubated intact peat cores from depth intervals of 5--15, 15--25, 25--35, and 35--45 cm from ombrotrophic bog, poor fen, and beaver pond margin sections of a cool-temperate peatland. CO{sub 2} production was measured over 12-day incubation periods at 4 and 14 C and under oxic and anoxic conditions. Rates ranged from 0.06 to 0.66 mg CO{sub 2} g{sup {minus}1} dry peat d{sup {minus}1} under oxic conditions and from 0.002 to 0.098 mg CO{sub 2} g{sup {minus}1} d{sup {minus}1} under anoxic conditions, and rates generally decreased with depth in the profiles. When expressed on a volumetric basis, production rates ranged from 0.3 to 23.4 g CO{sub 2} m{sup {minus}3} d{sup {minus}1}, and there was much less variation in CO{sub 2} production rates within profiles because the bulk density of peat increased with depth. The Q{sub 10} quotient, between 4 and 14 C, ranged from 1.0 to 7.7, depending on sample and incubation conditions, with an average of 2.0 for oxic and 2.7 for anoxic conditions. Oxic:anoxic ratios averaged 7:1, 16:1, and 12:1 for the bog, poor fen, and beaver pond margin samples, respectively. Degree of decomposition (von Post index) was the substrate property most strongly correlated with CO{sub 2} production. Based on temperature and incubation data for the peat profiles to a depth of 45 cm, annual decomposition values (k) ranged from 0.016 to 0.060 yr{sup {minus}1} under oxic conditions and from 0.001 to 0.007 yr{sup {minus}1} under anoxic conditions. A model of CO{sub 2} emission from the three sites, based on the incubation data and thermal and water table regime, gave good agreement with measured in situ CO{sub 2} emission rates, although summer emission rates were underpredicted, possibly because of the absence of a root production component in the incubations or because of underestimation of CO{sub 2} production rates in field conditions above the water table.

  19. Paleogene palaeogeography and basin evolution of the Western Carpathians, Northern Pannonian domain and adjoining areas

    NASA Astrophysics Data System (ADS)

    Kováč, Michal; Plašienka, Dušan; Soták, Ján; Vojtko, Rastislav; Oszczypko, Nestor; Less, György; Ćosović, Vlasta; Fügenschuh, Bernhard; Králiková, Silvia

    2016-05-01

    . The Rupelian basins gained a character of semi-closed sea spreading from the Magura Basin across the Central Western Carpathians up to the Hungarian Paleogene Basin. In the Late Oligocene, the Magura Basin connection with the Northern Hungarian Paleogene Basin remained open, probably along the northern edge of the Tisza microplate, and anoxic facies were substituted by open marine environments.

  20. Divergent/passive margin basins

    SciTech Connect

    Edwards, J.D. ); Santogrossi, P.A. )

    1989-01-01

    This book discusses the detailed geology of the four divergent margin basins and establishes a set of analog scenarios which can be used for future petroleum exploration. The divergent margin basins are the Campos basin of Brazil, the Gabon basin, the Niger delta, and the basins of the northwest shelf of Australia. These four petroleum basins present a wide range of stratigraphic sequences and structural styles that represent the diverse evolution of this large and important class of world petroleum basins.

  1. Seasonal variation of methane in the water column of Arkona and Bornholm Basin, western Baltic Sea

    NASA Astrophysics Data System (ADS)

    Gülzow, W.; Gräwe, U.; Kedzior, S.; Schmale, O.; Rehder, G.

    2014-11-01

    Methane and the hydrographic parameters temperature, salinity and oxygen (T, Sal, O2) were surveyed at several stations and along selected transects in the Arkona and Bornholm Basin, western Baltic Sea, between 2009 and 2012. The methane distribution in the two adjacent basins show annually reoccurring as well as seasonal variations, governed by stratification of the water column during the summer period, enhanced vertical mixing during winter and the frequent inflow of oxygen-rich saline water from the North Sea. The Arkona Basin is characterized by low methane concentrations in the surface water with increasing values towards the bottom water layer. Elevated methane concentrations were found in the bottom layer during the summer period. The Bornholm Basin also shows low methane concentrations in the surface water, but high values in the bottom water layer throughout the year. For anoxic conditions, often prevailing in the Bornholm Basin in summer, a positive correlation between methane and hydrogen sulfide concentrations was observed. Strong depletion in the stable isotopic ratio of methane in the deeper waters of the Bornholm Basin reveals effective oxidation processes. The midwater region from 50 to 70 m water depth in the Bornholm Basin is characterized by a methane-enriched water layer, persistent throughout the survey period. High-resolution hydrographic modelling of the physical driving forces suggest this finding to be caused by intrusion of methane-rich waters originating from the Arkona Basin into the water column of the Bornholm Basin and is shown to be a powerful tool for the interpretation of the development of the methane distribution in space and time.

  2. Biomarker characteristics of crude oils from the Qaidam basin, NW China

    SciTech Connect

    Ritts, B.D.; Hanson, A.D.; Moldowan, J.M.; Ekuan, A.

    1996-12-31

    The Qaidam basin, northwest China, has producing oil fields in the northwestern and northeastern corners of the basin. However, the petroleum systems in the basin and molecular organic geochemistry of the oils are undocumented. Jurassic and Tertiary petroleum source rocks occur throughout the northern Gaidam basin, and in surrounding mountain belts. The nonmarine Tertiary section contains thick sections of carbonate and evaporite-rich, hypersaline lacustrine mudstones, interbedded with alluvial and fluvial sandstones and conglomerates. In contrast, nonmarine Jurassic source rocks consist of laminated, black, lacustrine shales and related coals that were deposited in humid fluvial environments. Oils from the northwestern Qaidam basin have consistent biomarker and non-biomarker molecular organic geochemistry parameters, including low pristane: phytane ratio high-levels of gammacerane and C{sub 34} and C{sub 35} homohopanes, and the presence of {Beta} and {gamma}-carotane. These parameters indicate the source rock was deposited in a hypersaline, anoxic, reducing lacustrine environment, and probably had a significant carbonate or evaporate component. Based on geologic and geochemical data, the source rocks for these oils were in the Tertiary lacustrine section. Some oils from the northeastern part of the basin are similar geochemically to those from the northwest Qaidam basin, and also are derived from Tertiary hypersaline lacustrine source rocks. Other oils from the northeastern part of the basin are distinct in geochemical character. These oils have high pristane: phytane ratios, and do not contain hypersaline lacustrine indicators, as do northwestern Qaidam oils. The high pristane: phytane ratio, low relative abundance of C{sub 34} and C{sub 35} homohopanes and high terpane: sterane ratio, suggest a nonmarine origin for the northeastern Qaidam oils. These data indicate that Jurassic lacustrine shales were source rocks for oils in the northeastern Qaidam basin.

  3. Persistence of Carbonate Platform Environments in Central Mexico during the Oceanic Anoxic Event 2: impact of the Carribean Plateau?

    NASA Astrophysics Data System (ADS)

    Bomou, Brahimsamba; Adatte, Thierry; Föllmi, Karl; Arnaud-Vanneau, Annie; Fleitmann, Dominik

    2010-05-01

    The Cenomanian-Turonian Oceanic Anoxic Event 2 is described as an interruption of normal pelagic sediment deposition by several distinct intervals of widespread oceanic anoxia (Schlanger & Jenkyns, 1976; Jenkyns, 1980; Arthur et al., 1990) characterized by black shales deposition coinciding with a positive shift in carbon isotope excursion. Some authors show a relationship between OAEs and massive volcanic events associated with the emplacement of large igneous provinces (LIPs) and sea floor spreading at mid-ocean ridges (Kuroda et al., 2007; Snow et al., 2005). High metal abundance anomalies recorded in pelagic sections (e.g. Pueblo, Colorado) coincide with the massive volcanism that built the Carribean plateau (around 93-94 Ma), associated with the onset of OAE 2 (Snow et al., 2005). Mort et al., (2007) demonstrate that the onset of the OAE 2 was triggered by a short-lived but significant increase in phosphorus burial. The bottom waters became anoxic and switched from being a P sink to a P source, sustaining the productivity in a positive feedback loop. However, the behaviour of phosphorus and trace metals at larger scale, in different paleogeography and paleodepht is still poorly known. The Axaxacualco and Baranca el Cañon sections, located at the Guerrero-Morelos carbonate platform in southern Mexico exhibit a fully correlateable d13C curves. In the distal part of the carbonate platform at Axaxacualco, the maximum d13C positive excursion coincides with oligotrophic carbonate platform environments supported by low concentrations in P and characterized by abundant and diversified benthic microfauna and rudists. The impact of OAE appears may be more significant in the proximal part of the carbonate platform at Barranca, characterized by the deposition of thick laminated microbialites indicative of mesotrophic conditions. The Morelos Carbonate platform with oligotrophic to mesotrophic conditions was persistent throughout the entire OAE2 in Central Mexico despite

  4. Massive Expansion of Marine Archaea During The Early Albian Oceanic Anoxic Event 1B

    NASA Astrophysics Data System (ADS)

    Kuypers, M. M.; Kuypers, M. M.; Blokker, P.; Erbacher, J.; Kinkel, H.; Pancost, R. D.; Pancost, R. D.; Schouten, S.; Sinninghe Damsté, J. S.

    2001-12-01

    Oceanic anoxic events (OAEs), periods of globally enhanced burial of organic matter (OM) in the marine realm, played an important role in the mid-Cretaceous `greenhouse climate' by effectively reducing atmospheric carbon dioxide concentrations. It is generally believed that these OAEs were caused either by decreased remineralisation or increased production of phytoplanktonic OM. Here we show that enhanced organic carbon (OC) burial during the early Albian OAE1b (~112 My) was caused by a different process. Combined biogeochemical and stable carbon isotopic analyses indicate that black shales from this period contain up to 80% of OC derived from archaea. Archaea-derived isoprenoidal tetraether membrane lipids and free and macromolecularly bound isoprenoid alkanes are abundantly present in these black shales. More specifically the presence of certain ether lipids (cyclic biphytane tetraethers) indicates representatives of the pelagic archaea. To the best of our knowledge this is the earliest fossil evidence for marine planktonic archaea, extending their geological record by more than 60 million years. The diversity of archaeal lipids recovered from the OAE1b black shales suggests that they derive from a multitude of archaeal species. However, the specific 13C enrichment of all such lipids indicates a common `heavy' (13C-rich) carbon source for the archaea and/or a common pathway of carbon-fixation with a reduced 13C fractionation effect compared to the Calvin cycle used by algae, cyanobacteria and higher plants. The large differences (up to 12%) in 13C/12C ratios between the algal biomarkers and the much more abundant archaeal molecular fossils suggest that the latter were not living heterotrophically on photoautotrophic biomass. It seems likely that the archaea present during OAE1b used a chemical energy source (possibly ammonium) for carbon fixation since photoautotrophy within the domain of the Archaea is restricted to only a few species from hypersaline

  5. Interaction Between the Basin-Scale and Mesoscale Dynamics of the Black Sea: Impacts of Wind Forcing and Bottom Topography

    NASA Astrophysics Data System (ADS)

    Zatsepin, A. G.; Kremenetskiy, V. V.; Ratner, Y. B.; Stanichny, S. V.

    2008-12-01

    near-shore zone and deep regions. The timescale of the disintegration process was approximately 15-30 laboratory days - similar to that observed in natural conditions. In the case when L was equal to or larger than 2R, the instability was rather weak and had a wave-like nature. No energetic eddies were formed in this regime, and exchange between the near-shore and deep regions was reduced. The results of this study allow us to conclude that in the northeastern Black Sea, having a very narrow continental slope, the topographic control of RC is weak. The position and stability of the along-shore current are controlled by the Ekman pumping. The general mechanism of the mesoscale eddy formation is the instability of RC after the decrease of the Ekman pumping. In the northwestern Black sea, where the slope is wide (L is close to 4R), both the RC and mesoscale eddies are topographically controlled. Acknowledgements. The work was supported by the Program 17 "World Ocean" of the Russian Academy of Sciences, the grants of Russian Foundation for Basic Research and by the project MK-1220.2008.5 of the President of Russian Federation.

  6. Influence of microorganisms on the oxidation state distribution of multivalent actinides under anoxic conditions

    SciTech Connect

    Reed, Donald Timothy; Borkowski, Marian; Lucchini, Jean - Francois; Ams, David; Richmann, M. K.; Khaing, H.; Swanson, J. S.

    2010-12-10

    The fate and potential mobility of multivalent actinides in the subsurface is receiving increased attention as the DOE looks to cleanup the many legacy nuclear waste sites and associated subsurface contamination. Plutonium, uranium and neptunium are the near-surface multivalent contaminants of concern and are also key contaminants for the deep geologic disposal of nuclear waste. Their mobility is highly dependent on their redox distribution at their contamination source as well as along their potential migration pathways. This redox distribution is often controlled, especially in the near-surface where organic/inorganic contaminants often coexist, by the direct and indirect effects of microbial activity. Under anoxic conditions, indirect and direct bioreduction mechanisms exist that promote the prevalence of lower-valent species for multivalent actinides. Oxidation-state-specific biosorption is also an important consideration for long-term migration and can influence oxidation state distribution. Results of ongoing studies to explore and establish the oxidation-state specific interactions of soil bacteria (metal reducers and sulfate reducers) as well as halo-tolerant bacteria and Archaea for uranium, neptunium and plutonium will be presented. Enzymatic reduction is a key process in the bioreduction of plutonium and uranium, but co-enzymatic processes predominate in neptunium systems. Strong sorptive interactions can occur for most actinide oxidation states but are likely a factor in the stabilization of lower-valent species when more than one oxidation state can persist under anaerobic microbiologically-active conditions. These results for microbiologically active systems are interpreted in the context of their overall importance in defining the potential migration of multivalent actinides in the subsurface.

  7. Elemental copper nanoparticle toxicity to different trophic groups involved in anaerobic and anoxic wastewater treatment processes.

    PubMed

    Gonzalez-Estrella, Jorge; Puyol, Daniel; Gallagher, Sara; Sierra-Alvarez, Reyes; Field, Jim A

    2015-04-15

    Elemental copper nanoparticles (Cu(0) NPs) are potentially inhibitory to the different key microbial trophic groups involved in biological wastewater treatment processes. Cu-based NPs are known to be toxic to methanogens at low concentrations. However, very little is known about the toxic effect of Cu(0) NPs on other microbial groups involved in either upper trophic levels of anaerobic digestion or anoxic nitrogen removal processes. This study evaluated the toxicity of Cu(0) NPs to glucose fermentation, syntrophic propionate oxidation and denitrification in shaken batch bioassays with soluble substrates. Batch experiments were also supplemented with CuCl2 to evaluate the inhibitory impact of soluble Cu(II) ions. Syntrophic propionate oxidation and glucose fermentation were the least and most inhibited processes with inhibition constant (Ki) values of 0.202 and 0.047 mM of added Cu(0) NPs, respectively. Further analyses revealed that the Ki values calculated as a function of the free soluble Cu concentration were <0.003 mM for every biological process tested and most of these Ki values were similar in order of magnitude regardless of whether the Cu source was CuCl2 or Cu(0) NPs. The results taken as a whole indicate that Cu(0) NPs are toxic to all the microbial processes studied. Therefore, Cu(0) NPs can potentially be an important inhibitor of anaerobic wastewater treatment processes that rely on these trophic groups. The evidence suggests that the inhibitory impact of Cu(0) NPs was mainly due to the release of toxic Cu(II) ions originating from the corrosion and dissolution of Cu(0) NPs. PMID:25634735

  8. Cretaceous oceanic anoxic event 2 triggered by a massive magmatic episode.

    PubMed

    Turgeon, Steven C; Creaser, Robert A

    2008-07-17

    Oceanic anoxic events (OAEs) were episodes of widespread marine anoxia during which large amounts of organic carbon were buried on the ocean floor under oxygen-deficient bottom waters. OAE2, occurring at the Cenomanian/Turonian boundary (about 93.5 Myr ago), is the most widespread and best defined OAE of the mid-Cretaceous. Although the enhanced burial of organic matter can be explained either through increased primary productivity or enhanced preservation scenarios, the actual trigger mechanism, corresponding closely to the onset of these episodes of increased carbon sequestration, has not been clearly identified. It has been postulated that large-scale magmatic activity initially triggered OAE2 (refs 4, 5), but a direct proxy of magmatism preserved in the sedimentary record coinciding closely with the onset of OAE2 has not yet been found. Here we report seawater osmium isotope ratios in organic-rich sediments from two distant sites. We find that at both study sites the marine osmium isotope record changes abruptly just at or before the onset of OAE2. Using a simple two-component mixing equation, we calculate that over 97 per cent of the total osmium content in contemporaneous seawater at both sites is magmatic in origin, a approximately 30-50-fold increase relative to pre-OAE conditions. Furthermore, the magmatic osmium isotope signal appears slightly before the OAE2-as indicated by carbon isotope ratios-suggesting a time-lag of up to approximately 23 kyr between magmatism and the onset of significant organic carbon burial, which may reflect the reaction time of the global ocean system. Our marine osmium isotope data are indicative of a widespread magmatic pulse at the onset of OAE2, which may have triggered the subsequent deposition of large amounts of organic matter. PMID:18633415

  9. Anoxic growth of Ensifer meliloti 1021 by N2O-reduction, a potential mitigation strategy

    PubMed Central

    Bueno, Emilio; Mania, Daniel; Frostegard, Ǻsa; Bedmar, Eulogio J.; Bakken, Lars R.; Delgado, Maria J.

    2015-01-01

    Denitrification in agricultural soils is a major source of N2O. Legume crops enhance N2O emission by providing N-rich residues, thereby stimulating denitrification, both by free-living denitrifying bacteria and by the symbiont (rhizobium) within the nodules. However, there are limited data concerning N2O production and consumption by endosymbiotic bacteria associated with legume crops. It has been reported that the alfalfa endosymbiont Ensifer meliloti strain 1021, despite possessing and expressing the complete set of denitrification enzymes, is unable to grow via nitrate respiration under anoxic conditions. In the present study, we have demonstrated by using a robotized incubation system that this bacterium is able to grow through anaerobic respiration of N2O to N2. N2O reductase (N2OR) activity was not dependent on the presence of nitrogen oxyanions or NO, thus the expression could be induced by oxygen depletion alone. When incubated at pH 6, E. meliloti was unable to reduce N2O, corroborating previous observations found in both, extracted soil bacteria and Paracoccus denitrificans pure cultures, where expression of functional N2O reductase is difficult at low pH. Furthermore, the presence in the medium of highly reduced C-substrates, such as butyrate, negatively affected N2OR activity. The emission of N2O from soils can be lowered if legumes plants are inoculated with rhizobial strains overexpressing N2O reductase. This study demonstrates that strains like E. meliloti 1021, which do not produce N2O but are able to reduce the N2O emitted by other organisms, could act as even better N2O sinks. PMID:26074913

  10. Anoxic Biodegradation of Isosaccharinic Acids at Alkaline pH by Natural Microbial Communities

    PubMed Central

    Rout, Simon P.; Charles, Christopher J.; Doulgeris, Charalampos; McCarthy, Alan J.; Rooks, Dave J.; Loughnane, J. Paul; Laws, Andrew P.; Humphreys, Paul N.

    2015-01-01

    One design concept for the long-term management of the UK’s intermediate level radioactive wastes (ILW) is disposal to a cementitious geological disposal facility (GDF). Under the alkaline (10.013.0) anoxic conditions expected within a GDF, cellulosic wastes will undergo chemical hydrolysis. The resulting cellulose degradation products (CDP) are dominated by α- and β-isosaccharinic acids (ISA), which present an organic carbon source that may enable subsequent microbial colonisation of a GDF. Microcosms established from neutral, near-surface sediments demonstrated complete ISA degradation under methanogenic conditions up to pH 10.0. Degradation decreased as pH increased, with β-ISA fermentation more heavily influenced than α-ISA. This reduction in degradation rate was accompanied by a shift in microbial population away from organisms related to Clostridium sporosphaeroides to a more diverse Clostridial community. The increase in pH to 10.0 saw an increase in detection of Alcaligenes aquatilis and a dominance of hydrogenotrophic methanogens within the Archaeal population. Methane was generated up to pH 10.0 with acetate accumulation at higher pH values reflecting a reduced detection of acetoclastic methanogens. An increase in pH to 11.0 resulted in the accumulation of ISA, the absence of methanogenesis and the loss of biomass from the system. This study is the first to demonstrate methanogenesis from ISA by near surface microbial communities not previously exposed to these compounds up to and including pH 10.0. PMID:26367005

  11. Stable carbon isotope discrimination and microbiology of methane formation in tropical anoxic lake sediments

    NASA Astrophysics Data System (ADS)

    Conrad, R.; Noll, M.; Claus, P.; Klose, M.; Enrich-Prast, A.

    2010-12-01

    Methane is an important end product of degradation of organic matter in anoxic lake sediments. Methane is produced by either reduction of CO2 or cleavage of acetate involving different methanogenic archaea. The contribution of the different methanogenic paths and of the diverse bacteria and archaea involved in CH4 production exhibits a large variability that is not well understood. Lakes in tropical areas, e.g. in Brazil, are wetlands with high potential impact on the global CH4 budget. However, they have hardly been studied with respect to methanogenesis. Therefore, we used samples from 16 different lake sites in the Pantanal and Amazon region of Brazil to measure production of CH4, CO2, analyze the content of 13C in the products and in intermediately formed acetate, determine the abundance of bacterial and archaeal microorganisms and their community composition and diversity by targeting the genes of bacterial and archaeal ribosomal RNA and of methyl coenzyme M reductase, the key enzyme of methanogenic archaea. These experiments were done in the presence and absence of methyl fluoride, an inhibitor of acetoclastic methanogenesis. While production rates of CH4 and CO2 were correlated to the content of organic matter and the abundance of archaea in the sediment, values of 13C in acetate and CH4 were related to the 13C content of organic matter and to the path of CH4 production with its intrinsic carbon isotope fractionation. Isotope fractionation was small (average 10‰) for conversion of C-org to acetate-methyl, which was hardly further fractionated during CH4 production. However, fractionation was strong for CO2 conversion to CH4 (average 75‰), which generally accounted for >50% of total CH4 production. Canonical correspondence analysis did not reveal an effect of microbial community composition, despite the fact that it exhibited a pronounced variability among the different sediments.

  12. Stable carbon isotope discrimination and microbiology of methane formation in tropical anoxic lake sediments

    NASA Astrophysics Data System (ADS)

    Conrad, R.; Noll, M.; Claus, P.; Klose, M.; Bastos, W. R.; Enrich-Prast, A.

    2010-11-01

    Methane is an important end product of degradation of organic matter in anoxic lake sediments. Methane is mainly produced by either reduction of CO2 or cleavage of acetate involving different methanogenic archaea. The contribution of the different methanogenic paths and of the diverse bacteria and archaea involved in CH4 production exhibits a large variability that is not well understood. Lakes in tropical areas, e.g. in Brazil, are wetlands with high potential impact on the global CH4 budget. However, they have hardly been studied with respect to methanogenesis. Therefore, we used samples from 16 different lake sediments in the Pantanal and Amazon region of Brazil to measure production of CH4, CO2, analyze the content of 13C in the products and in intermediately formed acetate, determine the abundance of bacterial and archaeal microorgansisms and their community composition and diversity by targeting the genes of bacterial and archaeal ribosomal RNA and of methyl coenzyme M reductase, the key enzyme of methanogenic archaea. These experiments were done in the presence and absence of methyl fluoride, an inhibitor of acetoclastic methanogenesis. While production rates of CH4 and CO2 were correlated to the content of organic matter and the abundance of archaea in the sediment, values of 13C in acetate and CH4 were related to the 13C content of organic matter and to the path of CH4 production with its intrinsic carbon isotope fractionation. Isotope fractionation was small (average 10‰) for conversion of Corg to acetate-methyl, which was hardly further fractionated during CH4 production. However, fractionation was strong for CO2 conversion to CH4 (average 75‰), which generally accounted for >50% of total CH4 production. Canonical correspondence analysis did not reveal an effect of microbial community composition, despite the fact that it exhibited a pronounced variability among the different sediments.

  13. Stable carbon isotope discrimination and microbiology of methane formation in tropical anoxic lake sediments

    NASA Astrophysics Data System (ADS)

    Conrad, R.; Noll, M.; Claus, P.; Klose, M.; Bastos, W. R.; Enrich-Prast, A.

    2011-03-01

    Methane is an important end product of degradation of organic matter in anoxic lake sediments. Methane is mainly produced by either reduction of CO2 or cleavage of acetate involving different methanogenic archaea. The contribution of the different methanogenic paths and of the diverse bacteria and archaea involved in CH4 production exhibits a large variability that is not well understood. Lakes in tropical areas, e.g. in Brazil, are wetlands with high potential impact on the global CH4 budget. However, they have hardly been studied with respect to methanogenesis. Therefore, we used samples from 16 different lake sediments in the Pantanal and Amazon region of Brazil to measure production of CH4, CO2, analyze the content of 13C in the products and in intermediately formed acetate, determine the abundance of bacterial and archaeal microorgansisms and their community composition and diversity by targeting the genes of bacterial and archaeal ribosomal RNA and of methyl coenzyme M reductase, the key enzyme of methanogenic archaea. These experiments were done in the presence and absence of methyl fluoride, an inhibitor of acetoclastic methanogenesis. While production rates of CH4 and CO2 were correlated to the content of organic matter and the abundance of archaea in the sediment, values of 13C in acetate, CO2, and CH4 were related to the 13C content of organic matter and to the path of CH4 production with its intrinsic carbon isotope fractionation. Isotope fractionation was small (average 10‰) for conversion of Corg to acetate-methyl, which was hardly further fractionated during CH4 production. However, fractionation was strong for CO2 conversion to CH4 (average 75‰), which generally accounted for >50% of total CH4 production. Canonical correspondence analysis did not reveal an effect of microbial community composition, despite the fact that it exhibited a pronounced variability among the different sediments.

  14. Nitrogen polishing in a fully anoxic anammox MBBR treating mainstream nitritation-denitritation effluent.

    PubMed

    Regmi, Pusker; Holgate, Becky; Miller, Mark W; Park, Hongkeun; Chandran, Kartik; Wett, Bernhard; Murthy, Sudhir; Bott, Charles B

    2016-03-01

    As nitrogen discharge limits are becoming more stringent, short-cut nitrogen systems and tertiary nitrogen polishing steps are gaining popularity. For partial nitritation or nitritation-denitritation systems, anaerobic ammonia oxidation (anammox) polishing may be feasible to remove residual ammonia and nitrite from the effluent. Nitrogen polishing of mainstream nitritation-denitritation system effluent via anammox was studied at 25°C in a fully anoxic moving bed bioreactor (MBBR) (V = 0.45 m(3) ) over 385 days. Unlike other anammox based processes, a very fast startup of anammox MBBR was demonstrated, despite nitrite limited feeding conditions (influent nitrite = 0.7 ± 0.59 mgN/L, ammonia = 6.13 ± 2.86 mgN/L, nitrate = 3.41 ± 1.92 mgN/L). The nitrogen removal performance was very stable within a wide range of nitrogen inputs. Anammox bacteria (AMX) activity up to 1 gN/m(2) /d was observed which is comparable to other biofilm-based systems. It is generally believed that nitrate production limits nitrogen removal through AMX metabolism. However, in this study, anammox MBBR demonstrated ammonia, nitrite, and nitrate removal at limited chemical oxygen demand (COD) availability. AMX and heterotrophs contributed to 0.68 ± 0.17 and 0.32 ± 0.17 of TIN removal, respectively. It was speculated that nitrogen removal might be aided by denitratation which could be due to heterotrophs or the recently discovered ability for AMX to use short-chain fatty acids to reduce nitrate to nitrite. This study demonstrates the feasibility of anammox nitrogen polishing in an MBBR is possible for nitritation-denitration systems. PMID:26333200

  15. Reproductive tactics of male bearded goby (Sufflogobius bibarbatus) in anoxic and hypoxic waters

    NASA Astrophysics Data System (ADS)

    Seivåg, Maria Larsen; Salvanes, Anne Gro Vea; Utne-Palm, Anne Christine; Kjesbu, Olav Si'gurd

    2016-03-01

    The bearded goby (Sufflogobius bibarbatus), a key species in the northern Benguela Upwelling Ecosystem, tolerates extremely low levels of oxygen. Yet little is known about how its reproduction is affected by these harsh living conditions. The distribution patterns of alternative reproductive tactics of male bearded goby across the continental shelf off Namibia were investigated. Histology and stereology were for the first time used to validate macroscopic maturity development by estimating volume fraction of the different stages of spermatogenesis using "Delesse principle", an approach so far for teleosts barely used in studies on testes but applied in advanced oocyte estimation. The macroscopic scale appeared suitable for the purpose, and the prevalence of territorial and sneaker tactics could therefore be documented. The sneakers had relative large testes and small seminal vesicles (SV), with the opposite being the case for the territorials. A third, numerous category with intermediate sized testes and SV was also recognized with unclear underlying tactical rationale, although regression analyses indicated similar investment in testes weight in relation to somatic weight as for the territorials. Low oxygen levels were the most important factor limiting spawning activity in territorial males. Our data suggested the existence of a spawning site on the outer shelf of the central Namibian shelf where the bottom water is hypoxic (oxygen saturation of 6.2-6.7%) while the anoxic middle shelf area (oxygen saturation of 1.7-2.9%) appeared to show too low oxygen levels for spawning to take place. Hence, significant parts of this large shelf area appear unsuited for successful reproduction of the bearded goby, in particular for nest building by the territorials.

  16. Small-world characteristics of EEG patterns in post-anoxic encephalopathy.

    PubMed

    Beudel, Martijn; Tjepkema-Cloostermans, Marleen C; Boersma, Jochem H; van Putten, Michel J A M

    2014-01-01

    Post-anoxic encephalopathy (PAE) has a heterogenous outcome which is difficult to predict. At present, it is possible to predict poor outcome using somatosensory evoked potentials in only a minority of the patients at an early stage. In addition, it remains difficult to predict good outcome at an early stage. Network architecture, as can be quantified with continuous electroencephalography (cEEG), may serve as a candidate measure for predicting neurological outcome. Here, we explore whether cEEG monitoring can be used to detect the integrity of neural network architecture in patients with PAE after cardiac arrest. From 56 patients with PAE treated with mild therapeutic hypothermia, 19-channel cEEG data were recorded starting as soon as possible after cardiac arrest. Adjacency matrices of shared frequencies between 1 and 25 Hz of the EEG channels were obtained using Fourier transformations. Number of network nodes and connections, clustering coefficient (C), average path length (L), and small-world index (SWI) were derived. Outcome was quantified by the best cerebral performance category (CPC)-score within 6 months. Compared to non-survivors, survivors showed significantly more nodes and connections. L was significantly higher and C and SWI were significantly lower in the survivor group than in the non-survivor group. The number of nodes, connections, and the L were negatively correlated with the CPC-score. C and SWI correlated positively with the CPC-score. The combination of number of nodes, connections, C, and L showed the most significant difference and correlation between survivors and non-survivors and CPC-score. Our data might implicate that non-survivors have insufficient distribution and differentiation of neural activity for regaining normal brain function. These network differences, already present during hypothermia, might be further developed as early prognostic markers. The predictive values are however still inferior to current practice parameters

  17. Jellyfish Lake, Palau: Regeneration of C, N, Si, and P in anoxic marine lake sediments

    USGS Publications Warehouse

    Lyons, W.B.; Lent, R.M.; Burnett, W.C.; Chin, P.; Landing, W.M.; Orem, W.H.; McArthur, J.M.

    1996-01-01

    Sediment cores from Jellyfish Lake were processed under an inert atmosphere and the pore waters extracted and analyzed for the following parameters: pH, titration alkalinity (TA), Cl-, H4SiO4, PO43-, NH4+, Ca2-, Mg2+, SO42-, and H2S. Additionally, in one set of pore-water samples (core 10), the ??13C of the ??CO2 was also determined. The TA, H4SiO4, PO43-, NH4+, and H2S increased with depth in the pore waters above anoxic bottom-water values. H2S values increased to 3.8 ??M. In one case, both H4SiO4 and PO43- concentrations increased to a maximum value and then decreased with depth, suggesting removal into solid phases. The H4SiO4 concentrations are equal to or greater than pore-water values observed in sediments underlying upwelling areas. PO43- concentrations are, in general, lower than pore-water values from terrigenous nearshore areas but higher than nearshore carbonate pore-water values from Florida Bay or Bermuda. The Ca2+, Cl-, and Mg2+: Cl- ratios show slight decreases in the top 15-20 cm, suggesting that authigenic carbonate may be forming. This suggestion is supported by the fact that the pore waters are saturated with respect to CaCO3 due to the very high TAs. The ??13C measurements of the pore-water ??CO2 are from a shorter core. These measurements reach their most negative concentration at 72 cm and then become slightly heavier. This change is accompanied by a decrease in TA, suggesting the onset of methanogenesis at this location in this core.

  18. Potassium transmembrane fluxes in anoxic hepatocytes from goldfish (Carassius auratus L.).

    PubMed

    Mut, P N; Espelt, M V; Krumschnabel, G; Schwarzbaum, P J

    2006-01-01

    Despite the fact that anoxic goldfish hepatocytes can maintain the transmembrane gradients of Na(+), H(+) and Ca(2+), cyanide (CN) intoxication leads to a rapid breakdown of K(+) homeostasis. In this study, [(86)Rb(+)] K(+) fluxes across the plasma membrane of goldfish hepatocytes were studied in order to identify the possible causes of this imbalance. Four minutes of cyanide incubation induced an acute and stable 61% decrease of K(+) influx (mostly driven by Na,K-ATPase activity), whereas K(+) efflux increased by 24.3%, this imbalance yielding a net K(+) efflux of 0.279+/-0.024 nmol 10(-6) cells(-1) min(-1). This uncoupling was not observed when glycolytic ATP production was inhibited with iodoacetic acid. Although the CN-induced decrease of K(+) influx was fully reversible upon washout of the inhibitor, it could not be prevented by any of the following treatments: (1) addition of 2% bovine serum albumin, which binds extracellular fatty acids known to activate specific K(+) channels; (2) addition of ascorbate, which acts as a radical scavenger; (3) inclusion of 5 mM glucose as an extracellular carbon source; and (4) removal of medium oxygen (obtained by nitrogen bubbling). Regarding the elevation of K(+) efflux in the presence of CN, neither ATP-dependent K(+) channels nor the KCl cotransporter appeared to be activated, whereas BaCl(2), an inhibitor of voltage-gated K(+) channels, decreased K(+) efflux of CN-intoxicated cells to control levels. In summary, these results indicate that, in goldfish hepatocytes, the CN-induced K(+) imbalance results from acute Na,K-ATPase inhibition together with the activation of voltage-dependent K(+) channels, the latter probably resulting from transient membrane depolarization. PMID:16298170

  19. Effect of a Jurassic oceanic anoxic event on belemnite ecology and evolution.

    PubMed

    Ullmann, Clemens Vinzenz; Thibault, Nicolas; Ruhl, Micha; Hesselbo, Stephen P; Korte, Christoph

    2014-07-15

    The Toarcian oceanic anoxic event (T-OAE; ∼ 183 million y ago) is possibly the most extreme episode of widespread ocean oxygen deficiency in the Phanerozoic, coinciding with rapid atmospheric pCO2 increase and significant loss of biodiversity in marine faunas. The event is a unique past tipping point in the Earth system, where rapid and massive release of isotopically light carbon led to a major perturbation in the global carbon cycle as recorded in organic and inorganic C isotope records. Modern marine ecosystems are projected to experience major loss in biodiversity in response to enhanced ocean anoxia driven by anthropogenic release of greenhouse gases. Potential consequences of this anthropogenic forcing can be approximated by studying analog environmental perturbations in the past such as the T-OAE. Here we present to our knowledge the first organic carbon isotope record derived from the organic matrix in the calcite rostra of early Toarcian belemnites. We combine both organic and calcite carbon isotope analyses of individual specimens of these marine predators to obtain a refined reconstruction of the early Toarcian global exogenic carbon cycle perturbation and belemnite paleoecology. The organic carbon isotope data combined with measurements of oxygen isotope values from the same specimens allow for a more robust interpretation of the interplay between the global carbon cycle perturbation, environmental change, and biotic response during the T-OAE. We infer that belemnites adapted to environmental change by shifting their habitat from cold bottom waters to warm surface waters in response to expanded seafloor anoxia. PMID:24982187

  20. Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient

    PubMed Central

    Gough, Heidi L; Stahl, David A

    2011-01-01

    Contamination, such as by heavy metals, has frequently been implicated in altering microbial community structure. However, this association has not been extensively studied for anaerobic communities, or in freshwater lake sediments. We investigated microbial community structure in the metal-contaminated anoxic sediments of a eutrophic lake that were impacted over the course of 80 years by nearby zinc-smelting activities. Microbial community structure was inferred for bacterial, archaeal and eukaryotic populations by evaluating terminal restriction fragment length polymorphism (TRFLP) patterns in near-surface sediments collected in triplicate from five areas of the lake that had differing levels of metal contamination. The majority of the fragments in the bacterial and eukaryotic profiles showed no evidence of variation in association with metal contamination levels, and diversity revealed by these profiles remained consistent even as metal concentrations varied from 3000 to 27 000 mg kg−1 total Zn, 0.125 to 11.2 μ pore water Zn and 0.023 to 5.40 μ pore water As. Although most archaeal fragments also showed no evidence of variation, the prevalence of a fragment associated with mesophilic Crenarchaeota showed significant positive correlation with total Zn concentrations. This Crenarchaeota fragment dominated the archaeal TRFLP profiles, representing between 35% and 79% of the total measured peak areas. Lake DePue 16S rRNA gene sequences corresponding to this TRFLP fragment clustered with anaerobic and soil mesophilic Crenarchaeota sequences. Although Crenarchaeota have been associated with metal-contaminated groundwater and soils, this is a first report (to our knowledge) documenting potential increased prevalence of Crenarchaeota associated with elevated levels of metal contamination. PMID:20811473

  1. Enantioselective microbial transformation of the phenylpyrazole insecticide fipronil in anoxic sediments.

    PubMed

    Jones, W Jack; Mazur, Christopher S; Kenneke, John F; Garrison, A Wayne

    2007-12-15

    Fipronil, a chiral insecticide, was biotransformed initially to fipronil sulfide in anoxic sediment slurries following a short lag period. Sulfidogenic or methanogenic sediments transformed fipronil with half-lives of approximately 35 and 40 days, respectively. In all microbially active sediment slurries tested, the transformation of fipronil to fipronil sulfide was enantioselective. In the sulfidogenic sediment slurry, the enantiomeric fraction (EF) of fipronil decreased from an initial racemic EF value of 0.46 to a value of 0.22 during the incubation period of active fipronil transformation, indicating preferential transformation of the S-(+)-enantiomer. A previously unidentified product, 5-amino1-[2,6-dichloro-4-(trifluoromethyl)-phenyl]-4-(trifluoromethylthio)-1-H-pyrazole-3-carboxyamide, or fipronil sulfide-amide, was detected in the sulfidogenic slurries and coincided with the loss of fipronil sulfide. Biota from methanogenic freshwater sediment slurries also transformed fipronil enantioselectively but with a preference for the R-(-)-enantiomer. In all microbially inhibited (autoclaved) sediment slurries tested, no changes in the enantiomeric fractions of fipronil were observed and only low levels (< 5% of the added fipronil) of the fipronil sulfide metabolite were detected. In defined (model) chemical experiments, solutions of pyrite (FeS2) and iron sulfide (FeS) non-enantioselectively transformed fipronil primarily to either 2,6-dichloro-4-(trifluoromethyl)-aniline or to fipronil sulfide and fipronil amide, respectively. This report provides the first experimental evidence of enantioselective microbial transformation of fipronil in a natural environment (soil, water, and sediment) as well as identification of a novel fipronil biotransformation product. PMID:18200855

  2. Cadmium-isotopic evidence for increasing primary productivity during the Late Permian anoxic event

    NASA Astrophysics Data System (ADS)

    Georgiev, Svetoslav V.; Horner, Tristan J.; Stein, Holly J.; Hannah, Judith L.; Bingen, Bernard; Rehkämper, Mark

    2015-01-01

    Earth's most extreme extinction event near the end of the Late Permian decimated more than 90% of all extant marine species. Widespread and intensive oceanic anoxia almost certainly contributed to the catastrophe, though the driving mechanisms that sustained such conditions are still debated. Of particular interest is whether water column anoxia was a consequence of a 'stagnant ocean', or if it was controlled by increases in nutrient supply, primary productivity, and subsequent heterotrophic respiration. Testing these competing hypotheses requires deconvolving sedimentary/bottom water redox conditions from changes in surface water productivity in marine sediments. We address this issue by studying marine shales from East Greenland and the mid-Norwegian shelf and combining sedimentary redox proxies with cadmium-isotopic analyses. Sedimentary nitrogen-isotopic data, pyrite framboid analyses, and organic and inorganic shale geochemistry reveal sulfidic conditions with vigorous upwelling, and increasingly anoxic conditions with a strengthening upwelling in the Greenland and Norwegian sections, respectively. Detailed analysis of sedimentary metal budgets illustrates that Cd is primarily associated with organic carbon and records primary geochemical signatures, thus enabling reconstruction of surface water nutrient utilization. Cadmium-isotopic analyses of the authigenic shale fraction released by inverse aqua regia digestion yield an average δ114Cd110 of + 0.15 ± 0.01 ‰ (2 SE, n = 12; rel. NIST SRM 3108), indicative of incomplete surface water nutrient utilization up-section. The constant degree of nutrient utilization combined with strong upwelling requires increasing primary productivity - and not oceanic stagnation - to balance the larger nutrient fluxes to both study sites during the development of the Late Permian water column anoxia. Overall, our data illustrate that if bottom water redox and upwelling can be adequately constrained, Cd-isotopic analyses of

  3. NF-κB and epigenetic mechanisms as integrative regulators of brain resilience to anoxic stress.

    PubMed

    Sarnico, Ilenia; Branca, Caterina; Lanzillotta, Annamaria; Porrini, Vanessa; Benarese, Marina; Spano, Pier Franco; Pizzi, Marina

    2012-10-01

    Brain cells display an amazing ability to respond to several different types of environmental stimuli and integrate this response physiologically. Some of these responses can outlive the original stimulus by days, weeks or even longer. Long-lasting changes in both physiological and pathological conditions occurring in response to external stimuli are almost always mediated by changes in gene expression. To effect these changes, cells have developed an impressive repertoire of signaling systems designed to modulate the activity of numerous transcription factors and epigenetic mechanisms affecting the chromatin structure. Since its initial characterization in the nervous system, NF-κB has shown to respond to multiple signals and elicit pleiotropic activities suggesting that it may play a pivotal role in integration of different types of information within the brain. Ample evidence demonstrates that NF-κB factors are engaged in and necessary for neuronal development and synaptic plasticity, but they also regulate brain response to environmental noxae. By focusing on the complexity of NF-κB transcriptional activity in neuronal cell death, it emerged that the composition of NF-κB active dimers finely tunes the neuronal vulnerability to brain ischemia. Even though we are only beginning to understand the contribution of distinct NF-κB family members to the regulation of gene transcription in the brain, an additional level of regulation of NF-κB activity has emerged as operated by the epigenetic mechanisms modulating histone acetylation. We will discuss NF-κB and epigenetic mechanisms as integrative regulators of brain resilience to anoxic stress and useful drug targets for restoration of brain function. This article is part of a Special Issue entitled: Brain Integration. PMID:22575713

  4. Anoxic growth of Ensi