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Sample records for neuro-fuzzy inference systems

  1. Aalborg Universitet Control of a methanol reformer system using an Adaptive NeuroFuzzy Inference

    E-print Network

    Andreasen, Søren Juhl

    Aalborg Universitet Control of a methanol reformer system using an Adaptive NeuroFuzzy Inference. (2012). Control of a methanol reformer system using an Adaptive NeuroFuzzy Inference System approach from vbn.aau.dk on: juli 06, 2015 #12;Control of a methanol reformer system using an Adaptive Neuro

  2. A new learning algorithm for a fully connected neuro-fuzzy inference system.

    PubMed

    Chen, C L Philip; Wang, Jing; Wang, Chi-Hsu; Chen, Long

    2014-10-01

    A traditional neuro-fuzzy system is transformed into an equivalent fully connected three layer neural network (NN), namely, the fully connected neuro-fuzzy inference systems (F-CONFIS). The F-CONFIS differs from traditional NNs by its dependent and repeated weights between input and hidden layers and can be considered as the variation of a kind of multilayer NN. Therefore, an efficient learning algorithm for the F-CONFIS to cope these repeated weights is derived. Furthermore, a dynamic learning rate is proposed for neuro-fuzzy systems via F-CONFIS where both premise (hidden) and consequent portions are considered. Several simulation results indicate that the proposed approach achieves much better accuracy and fast convergence. PMID:25291730

  3. A Neuro-Fuzzy Inference System Combining Wavelet Denoising, Principal Component Analysis, and Sequential Probability Ratio Test for Sensor Monitoring

    SciTech Connect

    Na, Man Gyun; Oh, Seungrohk

    2002-11-15

    A neuro-fuzzy inference system combined with the wavelet denoising, principal component analysis (PCA), and sequential probability ratio test (SPRT) methods has been developed to monitor the relevant sensor using the information of other sensors. The parameters of the neuro-fuzzy inference system that estimates the relevant sensor signal are optimized by a genetic algorithm and a least-squares algorithm. The wavelet denoising technique was applied to remove noise components in input signals into the neuro-fuzzy system. By reducing the dimension of an input space into the neuro-fuzzy system without losing a significant amount of information, the PCA was used to reduce the time necessary to train the neuro-fuzzy system, simplify the structure of the neuro-fuzzy inference system, and also, make easy the selection of the input signals into the neuro-fuzzy system. By using the residual signals between the estimated signals and the measured signals, the SPRT is applied to detect whether the sensors are degraded or not. The proposed sensor-monitoring algorithm was verified through applications to the pressurizer water level, the pressurizer pressure, and the hot-leg temperature sensors in pressurized water reactors.

  4. Estimating Reservoir Inflow Using RADAR Forecasted Precipitation and Adaptive Neuro Fuzzy Inference System

    NASA Astrophysics Data System (ADS)

    Yi, J.; Choi, C.

    2014-12-01

    Rainfall observation and forecasting using remote sensing such as RADAR(Radio Detection and Ranging) and satellite images are widely used to delineate the increased damage by rapid weather changeslike regional storm and flash flood. The flood runoff was calculated by using adaptive neuro-fuzzy inference system, the data driven models and MAPLE(McGill Algorithm for Precipitation Nowcasting by Lagrangian Extrapolation) forecasted precipitation data as the input variables.The result of flood estimation method using neuro-fuzzy technique and RADAR forecasted precipitation data was evaluated by comparing it with the actual data.The Adaptive Neuro Fuzzy method was applied to the Chungju Reservoir basin in Korea. The six rainfall events during the flood seasons in 2010 and 2011 were used for the input data.The reservoir inflow estimation results were comparedaccording to the rainfall data used for training, checking and testing data in the model setup process. The results of the 15 models with the combination of the input variables were compared and analyzed. Using the relatively larger clustering radius and the biggest flood ever happened for training data showed the better flood estimation in this study.The model using the MAPLE forecasted precipitation data showed better result for inflow estimation in the Chungju Reservoir.

  5. Multiple Adaptive Neuro-Fuzzy Inference System with Automatic Features Extraction Algorithm for Cervical Cancer Recognition

    PubMed Central

    Subhi Al-batah, Mohammad; Mat Isa, Nor Ashidi; Klaib, Mohammad Fadel; Al-Betar, Mohammed Azmi

    2014-01-01

    To date, cancer of uterine cervix is still a leading cause of cancer-related deaths in women worldwide. The current methods (i.e., Pap smear and liquid-based cytology (LBC)) to screen for cervical cancer are time-consuming and dependent on the skill of the cytopathologist and thus are rather subjective. Therefore, this paper presents an intelligent computer vision system to assist pathologists in overcoming these problems and, consequently, produce more accurate results. The developed system consists of two stages. In the first stage, the automatic features extraction (AFE) algorithm is performed. In the second stage, a neuro-fuzzy model called multiple adaptive neuro-fuzzy inference system (MANFIS) is proposed for recognition process. The MANFIS contains a set of ANFIS models which are arranged in parallel combination to produce a model with multi-input-multioutput structure. The system is capable of classifying cervical cell image into three groups, namely, normal, low-grade squamous intraepithelial lesion (LSIL) and high-grade squamous intraepithelial lesion (HSIL). The experimental results prove the capability of the AFE algorithm to be as effective as the manual extraction by human experts, while the proposed MANFIS produces a good classification performance with 94.2% accuracy. PMID:24707316

  6. Application of adaptive neuro-fuzzy inference system for epileptic seizure detection using wavelet feature extraction.

    PubMed

    Subasi, Abdulhamit

    2007-02-01

    Intelligent computing tools such as artificial neural network (ANN) and fuzzy logic approaches are demonstrated to be competent when applied individually to a variety of problems. Recently, there has been a growing interest in combining both these approaches, and as a result, neuro-fuzzy computing techniques have been evolved. In this study, a new approach based on an adaptive neuro-fuzzy inference system (ANFIS) was presented for epileptic seizure detection. The proposed ANFIS model combined the neural network adaptive capabilities and the fuzzy logic qualitative approach. Decision making was performed in two stages: feature extraction using the wavelet transform (WT) and the ANFIS trained with the backpropagation gradient descent method in combination with the least squares method. Some conclusions concerning the impacts of features on the detection of epileptic seizures were obtained through analysis of the ANFIS. The results are highly promising, and a comparative analysis suggests that the proposed modeling approach outperforms ANN model in terms of training performances and classification accuracies. The results confirmed that the proposed ANFIS model has some potential in epileptic seizure detection. The ANFIS model achieved accuracy rates which were higher than that of the stand-alone neural network model. PMID:16480706

  7. Review of Medical Image Classification using the Adaptive Neuro-Fuzzy Inference System

    PubMed Central

    Hosseini, Monireh Sheikh; Zekri, Maryam

    2012-01-01

    Image classification is an issue that utilizes image processing, pattern recognition and classification methods. Automatic medical image classification is a progressive area in image classification, and it is expected to be more developed in the future. Because of this fact, automatic diagnosis can assist pathologists by providing second opinions and reducing their workload. This paper reviews the application of the adaptive neuro-fuzzy inference system (ANFIS) as a classifier in medical image classification during the past 16 years. ANFIS is a fuzzy inference system (FIS) implemented in the framework of an adaptive fuzzy neural network. It combines the explicit knowledge representation of an FIS with the learning power of artificial neural networks. The objective of ANFIS is to integrate the best features of fuzzy systems and neural networks. A brief comparison with other classifiers, main advantages and drawbacks of this classifier are investigated. PMID:23493054

  8. Training Hybrid Neuro-Fuzzy System to Infer Permeability in Wells on Maracaibo Lake, Venezuela

    E-print Network

    Hurtado, Nuri; Torres, Julio

    2014-01-01

    The high accuracy on inferrring of rocks properties, such as permeability ($k$), is a very useful study in the analysis of wells. This has led to development and use of empirical equations like Tixier, Timur, among others. In order to improve the inference of permeability we used a hybrid Neuro-Fuzzy System (NFS). The NFS allowed us to infer permeability of well, from data of porosity ($\\phi$) and water saturation ($Sw$). The work was performed with data from wells VCL-1021 (P21) and VCL-950 (P50), Block III, Maracaibo Lake, Venezuela. We evaluated the NFS equations ($k_{P50,i}(\\phi_i,Sw_i)$) with neighboring well data ($P21$), in order to verify the validity of the equations in the area. We have used ANFIS in MatLab.

  9. Adaptive neuro-fuzzy inference system for classification of EEG signals using wavelet coefficients.

    PubMed

    Güler, Inan; Ubeyli, Elif Derya

    2005-10-30

    This paper describes the application of adaptive neuro-fuzzy inference system (ANFIS) model for classification of electroencephalogram (EEG) signals. Decision making was performed in two stages: feature extraction using the wavelet transform (WT) and the ANFIS trained with the backpropagation gradient descent method in combination with the least squares method. Five types of EEG signals were used as input patterns of the five ANFIS classifiers. To improve diagnostic accuracy, the sixth ANFIS classifier (combining ANFIS) was trained using the outputs of the five ANFIS classifiers as input data. The proposed ANFIS model combined the neural network adaptive capabilities and the fuzzy logic qualitative approach. Some conclusions concerning the saliency of features on classification of the EEG signals were obtained through analysis of the ANFIS. The performance of the ANFIS model was evaluated in terms of training performance and classification accuracies and the results confirmed that the proposed ANFIS model has potential in classifying the EEG signals. PMID:16054702

  10. Adaptive neuro-fuzzy inference system for real-time monitoring of integrated-constructed wetlands.

    PubMed

    Dzakpasu, Mawuli; Scholz, Miklas; McCarthy, Valerie; Jordan, Siobhán; Sani, Abdulkadir

    2015-01-01

    Monitoring large-scale treatment wetlands is costly and time-consuming, but required by regulators. Some analytical results are available only after 5 days or even longer. Thus, adaptive neuro-fuzzy inference system (ANFIS) models were developed to predict the effluent concentrations of 5-day biochemical oxygen demand (BOD5) and NH4-N from a full-scale integrated constructed wetland (ICW) treating domestic wastewater. The ANFIS models were developed and validated with a 4-year data set from the ICW system. Cost-effective, quicker and easier to measure variables were selected as the possible predictors based on their goodness of correlation with the outputs. A self-organizing neural network was applied to extract the most relevant input variables from all the possible input variables. Fuzzy subtractive clustering was used to identify the architecture of the ANFIS models and to optimize fuzzy rules, overall, improving the network performance. According to the findings, ANFIS could predict the effluent quality variation quite strongly. Effluent BOD5 and NH4-N concentrations were predicted relatively accurately by other effluent water quality parameters, which can be measured within a few hours. The simulated effluent BOD5 and NH4-N concentrations well fitted the measured concentrations, which was also supported by relatively low mean squared error. Thus, ANFIS can be useful for real-time monitoring and control of ICW systems. PMID:25607665

  11. Intelligent Modeling Combining Adaptive Neuro Fuzzy Inference System and Genetic Algorithm for Optimizing Welding Process Parameters

    NASA Astrophysics Data System (ADS)

    Gowtham, K. N.; Vasudevan, M.; Maduraimuthu, V.; Jayakumar, T.

    2011-04-01

    Modified 9Cr-1Mo ferritic steel is used as a structural material for steam generator components of power plants. Generally, tungsten inert gas (TIG) welding is preferred for welding of these steels in which the depth of penetration achievable during autogenous welding is limited. Therefore, activated flux TIG (A-TIG) welding, a novel welding technique, has been developed in-house to increase the depth of penetration. In modified 9Cr-1Mo steel joints produced by the A-TIG welding process, weld bead width, depth of penetration, and heat-affected zone (HAZ) width play an important role in determining the mechanical properties as well as the performance of the weld joints during service. To obtain the desired weld bead geometry and HAZ width, it becomes important to set the welding process parameters. In this work, adaptative neuro fuzzy inference system is used to develop independent models correlating the welding process parameters like current, voltage, and torch speed with weld bead shape parameters like depth of penetration, bead width, and HAZ width. Then a genetic algorithm is employed to determine the optimum A-TIG welding process parameters to obtain the desired weld bead shape parameters and HAZ width.

  12. Adaptive neuro-fuzzy inference system to improve the power quality of a split shaft microturbine power generation system

    NASA Astrophysics Data System (ADS)

    O?uz, Yüksel; Üstün, Seydi Vakkas; Yabanova, ?smail; Yumurtaci, Mehmet; Güney, ?rfan

    2012-01-01

    This article presents design of adaptive neuro-fuzzy inference system (ANFIS) for the turbine speed control for purpose of improving the power quality of the power production system of a split shaft microturbine. To improve the operation performance of the microturbine power generation system (MTPGS) and to obtain the electrical output magnitudes in desired quality and value (terminal voltage, operation frequency, power drawn by consumer and production power), a controller depended on adaptive neuro-fuzzy inference system was designed. The MTPGS consists of the microturbine speed controller, a split shaft microturbine, cylindrical pole synchronous generator, excitation circuit and voltage regulator. Modeling of dynamic behavior of synchronous generator driver with a turbine and split shaft turbine was realized by using the Matlab/Simulink and SimPowerSystems in it. It is observed from the simulation results that with the microturbine speed control made with ANFIS, when the MTPGS is operated under various loading situations, the terminal voltage and frequency values of the system can be settled in desired operation values in a very short time without significant oscillation and electrical production power in desired quality can be obtained.

  13. Adaptive neuro-fuzzy inference system for temperature and humidity profile retrieval from microwave radiometer observations

    NASA Astrophysics Data System (ADS)

    Ramesh, K.; Kesarkar, A. P.; Bhate, J.; Venkat Ratnam, M.; Jayaraman, A.

    2015-01-01

    The retrieval of accurate profiles of temperature and water vapour is important for the study of atmospheric convection. Recent development in computational techniques motivated us to use adaptive techniques in the retrieval algorithms. In this work, we have used an adaptive neuro-fuzzy inference system (ANFIS) to retrieve profiles of temperature and humidity up to 10 km over the tropical station Gadanki (13.5° N, 79.2° E), India. ANFIS is trained by using observations of temperature and humidity measurements by co-located Meisei GPS radiosonde (henceforth referred to as radiosonde) and microwave brightness temperatures observed by radiometrics multichannel microwave radiometer MP3000 (MWR). ANFIS is trained by considering these observations during rainy and non-rainy days (ANFIS(RD + NRD)) and during non-rainy days only (ANFIS(NRD)). The comparison of ANFIS(RD + NRD) and ANFIS(NRD) profiles with independent radiosonde observations and profiles retrieved using multivariate linear regression (MVLR: RD + NRD and NRD) and artificial neural network (ANN) indicated that the errors in the ANFIS(RD + NRD) are less compared to other retrieval methods. The Pearson product movement correlation coefficient (r) between retrieved and observed profiles is more than 92% for temperature profiles for all techniques and more than 99% for the ANFIS(RD + NRD) technique Therefore this new techniques is relatively better for the retrieval of temperature profiles. The comparison of bias, mean absolute error (MAE), RMSE and symmetric mean absolute percentage error (SMAPE) of retrieved temperature and relative humidity (RH) profiles using ANN and ANFIS also indicated that profiles retrieved using ANFIS(RD + NRD) are significantly better compared to the ANN technique. The analysis of profiles concludes that retrieved profiles using ANFIS techniques have improved the temperature retrievals substantially; however, the retrieval of RH by all techniques considered in this paper (ANN, MVLR and ANFIS) has limited success.

  14. Risk Mapping of Cutaneous Leishmaniasis via a Fuzzy C Means-based Neuro-Fuzzy Inference System

    NASA Astrophysics Data System (ADS)

    Akhavan, P.; Karimi, M.; Pahlavani, P.

    2014-10-01

    Finding pathogenic factors and how they are spread in the environment has become a global demand, recently. Cutaneous Leishmaniasis (CL) created by Leishmania is a special parasitic disease which can be passed on to human through phlebotomus of vector-born. Studies show that economic situation, cultural issues, as well as environmental and ecological conditions can affect the prevalence of this disease. In this study, Data Mining is utilized in order to predict CL prevalence rate and obtain a risk map. This case is based on effective environmental parameters on CL and a Neuro-Fuzzy system was also used. Learning capacity of Neuro-Fuzzy systems in neural network on one hand and reasoning power of fuzzy systems on the other, make it very efficient to use. In this research, in order to predict CL prevalence rate, an adaptive Neuro-fuzzy inference system with fuzzy inference structure of fuzzy C Means clustering was applied to determine the initial membership functions. Regarding to high incidence of CL in Ilam province, counties of Ilam, Mehran, and Dehloran have been examined and evaluated. The CL prevalence rate was predicted in 2012 by providing effective environmental map and topography properties including temperature, moisture, annual, rainfall, vegetation and elevation. Results indicate that the model precision with fuzzy C Means clustering structure rises acceptable RMSE values of both training and checking data and support our analyses. Using the proposed data mining technology, the pattern of disease spatial distribution and vulnerable areas become identifiable and the map can be used by experts and decision makers of public health as a useful tool in management and optimal decision-making.

  15. Adaptive neuro-fuzzy inference system for acoustic analysis of 4-channel phonocardiograms using empirical mode decomposition.

    PubMed

    Becerra, Miguel A; Orrego, Diana A; Delgado-Trejos, Edilson

    2013-01-01

    The heart's mechanical activity can be appraised by auscultation recordings, taken from the 4-Standard Auscultation Areas (4-SAA), one for each cardiac valve, as there are invisible murmurs when a single area is examined. This paper presents an effective approach for cardiac murmur detection based on adaptive neuro-fuzzy inference systems (ANFIS) over acoustic representations derived from Empirical Mode Decomposition (EMD) and Hilbert-Huang Transform (HHT) of 4-channel phonocardiograms (4-PCG). The 4-PCG database belongs to the National University of Colombia. Mel-Frequency Cepstral Coefficients (MFCC) and statistical moments of HHT were estimated on the combination of different intrinsic mode functions (IMFs). A fuzzy-rough feature selection (FRFS) was applied in order to reduce complexity. An ANFIS network was implemented on the feature space, randomly initialized, adjusted using heuristic rules and trained using a hybrid learning algorithm made up by least squares and gradient descent. Global classification for 4-SAA was around 98.9% with satisfactory sensitivity and specificity, using a 50-fold cross-validation procedure (70/30 split). The representation capability of the EMD technique applied to 4-PCG and the neuro-fuzzy inference of acoustic features offered a high performance to detect cardiac murmurs. PMID:24109851

  16. Prediction analysis and comparison between agriculture and mining stocks in Indonesia by using adaptive neuro-fuzzy inference system (ANFIS)

    NASA Astrophysics Data System (ADS)

    Mahandrio, Irsantyo; Budi, Andriantama; Liong, The Houw; Purqon, Acep

    2015-09-01

    The growing patterns in cultural and mining sectors are interesting particularly in developed country such as in Indonesia. Here, we investigate the local characteristics of stocks between the sectors of agriculture and mining which si representing two leading companies and two common companies in these sectors. We analyze the prediction by using Adaptive Neuro Fuzzy Inference System (ANFIS). The type of Fuzzy Inference System (FIS) is Sugeno type with Generalized Bell membership function (Gbell). Our results show that ANFIS is a proper method to predicting the stock market with the RMSE : 0.14% for AALI and 0.093% for SGRO representing the agriculture sectors, meanwhile, 0.073% for ANTM and 0.1107% for MDCO representing the mining sectors.

  17. Adaptive Neuro-Fuzzy Inference System for Classification of Background EEG Signals from ESES Patients and Controls

    PubMed Central

    Yang, Zhixian; Wang, Yinghua; Ouyang, Gaoxiang

    2014-01-01

    Background electroencephalography (EEG), recorded with scalp electrodes, in children with electrical status epilepticus during slow-wave sleep (ESES) syndrome and control subjects has been analyzed. We considered 10 ESES patients, all right-handed and aged 3–9 years. The 10 control individuals had the same characteristics of the ESES ones but presented a normal EEG. Recordings were undertaken in the awake and relaxed states with their eyes open. The complexity of background EEG was evaluated using the permutation entropy (PE) and sample entropy (SampEn) in combination with the ANOVA test. It can be seen that the entropy measures of EEG are significantly different between the ESES patients and normal control subjects. Then, a classification framework based on entropy measures and adaptive neuro-fuzzy inference system (ANFIS) classifier is proposed to distinguish ESES and normal EEG signals. The results are promising and a classification accuracy of about 89% is achieved. PMID:24790547

  18. Analysis prediction of Indonesian banks (BCA, BNI, MANDIRI) using adaptive neuro-fuzzy inference system (ANFIS) and investment strategies

    NASA Astrophysics Data System (ADS)

    Trianto, Andriantama Budi; Hadi, I. M.; Liong, The Houw; Purqon, Acep

    2015-09-01

    Indonesian economical development is growing well. It has effect for their invesment in Banks and the stock market. In this study, we perform prediction for the three blue chips of Indonesian bank i.e. BCA, BNI, and MANDIRI by using the method of Adaptive Neuro-Fuzzy Inference System (ANFIS) with Takagi-Sugeno rules and Generalized bell (Gbell) as the membership function. Our results show that ANFIS perform good prediction with RMSE for BCA of 27, BNI of 5.29, and MANDIRI of 13.41, respectively. Furthermore, we develop an active strategy to gain more benefit. We compare between passive strategy versus active strategy. Our results shows that for the passive strategy gains 13 million rupiah, while for the active strategy gains 47 million rupiah in one year. The active investment strategy significantly shows gaining multiple benefit than the passive one.

  19. Estimating oxygen consumption from heart rate using adaptive neuro-fuzzy inference system and analytical approaches.

    PubMed

    Kolus, Ahmet; Dubé, Philippe-Antoine; Imbeau, Daniel; Labib, Richard; Dubeau, Denise

    2014-11-01

    In new approaches based on adaptive neuro-fuzzy systems (ANFIS) and analytical method, heart rate (HR) measurements were used to estimate oxygen consumption (VO2). Thirty-five participants performed Meyer and Flenghi's step-test (eight of which performed regeneration release work), during which heart rate and oxygen consumption were measured. Two individualized models and a General ANFIS model that does not require individual calibration were developed. Results indicated the superior precision achieved with individualized ANFIS modelling (RMSE = 1.0 and 2.8 ml/kg min in laboratory and field, respectively). The analytical model outperformed the traditional linear calibration and Flex-HR methods with field data. The General ANFIS model's estimates of VO2 were not significantly different from actual field VO2 measurements (RMSE = 3.5 ml/kg min). With its ease of use and low implementation cost, the General ANFIS model shows potential to replace any of the traditional individualized methods for VO2 estimation from HR data collected in the field. PMID:24793823

  20. Modeling and Simulation of An Adaptive Neuro-Fuzzy Inference System (ANFIS) for Mobile Learning

    ERIC Educational Resources Information Center

    Al-Hmouz, A.; Shen, Jun; Al-Hmouz, R.; Yan, Jun

    2012-01-01

    With recent advances in mobile learning (m-learning), it is becoming possible for learning activities to occur everywhere. The learner model presented in our earlier work was partitioned into smaller elements in the form of learner profiles, which collectively represent the entire learning process. This paper presents an Adaptive Neuro-Fuzzy

  1. Application of adaptive neuro-fuzzy inference system and cuckoo optimization algorithm for analyzing electro chemical machining process

    NASA Astrophysics Data System (ADS)

    Teimouri, Reza; Sohrabpoor, Hamed

    2013-12-01

    Electrochemical machining process (ECM) is increasing its importance due to some of the specific advantages which can be exploited during machining operation. The process offers several special privileges such as higher machining rate, better accuracy and control, and wider range of materials that can be machined. Contribution of too many predominate parameters in the process, makes its prediction and selection of optimal values really complex, especially while the process is programmized for machining of hard materials. In the present work in order to investigate effects of electrolyte concentration, electrolyte flow rate, applied voltage and feed rate on material removal rate (MRR) and surface roughness (SR) the adaptive neuro-fuzzy inference systems (ANFIS) have been used for creation predictive models based on experimental observations. Then the ANFIS 3D surfaces have been plotted for analyzing effects of process parameters on MRR and SR. Finally, the cuckoo optimization algorithm (COA) was used for selection solutions in which the process reaches maximum material removal rate and minimum surface roughness simultaneously. Results indicated that the ANFIS technique has superiority in modeling of MRR and SR with high prediction accuracy. Also, results obtained while applying of COA have been compared with those derived from confirmatory experiments which validate the applicability and suitability of the proposed techniques in enhancing the performance of ECM process.

  2. Neuro-fuzzy controller of low head hydropower plants using adaptive-network based fuzzy inference system

    SciTech Connect

    Djukanovic, M.B.; Calovic, M.S.; Vesovic, B.V.; Sobajic, D.J.

    1997-12-01

    This paper presents an attempt of nonlinear, multivariable control of low-head hydropower plants, by using adaptive-network based fuzzy inference system (ANFIS). The new design technique enhances fuzzy controllers with self-learning capability for achieving prescribed control objectives in a near optimal manner. The controller has flexibility for accepting more sensory information, with the main goal to improve the generator unit transients, by adjusting the exciter input, the wicket gate and runner blade positions. The developed ANFIS controller whose control signals are adjusted by using incomplete on-line measurements, can offer better damping effects to generator oscillations over a wide range of operating conditions, than conventional controllers. Digital simulations of hydropower plant equipped with low-head Kaplan turbine are performed and the comparisons of conventional excitation-governor control, state-feedback optimal control and ANFIS based output feedback control are presented. To demonstrate the effectiveness of the proposed control scheme and the robustness of the acquired neuro-fuzzy controller, the controller has been implemented on a complex high-order non-linear hydrogenerator model.

  3. Prediction of radical scavenging activities of anthocyanins applying adaptive neuro-fuzzy inference system (ANFIS) with quantum chemical descriptors.

    PubMed

    Jhin, Changho; Hwang, Keum Taek

    2014-01-01

    Radical scavenging activity of anthocyanins is well known, but only a few studies have been conducted by quantum chemical approach. The adaptive neuro-fuzzy inference system (ANFIS) is an effective technique for solving problems with uncertainty. The purpose of this study was to construct and evaluate quantitative structure-activity relationship (QSAR) models for predicting radical scavenging activities of anthocyanins with good prediction efficiency. ANFIS-applied QSAR models were developed by using quantum chemical descriptors of anthocyanins calculated by semi-empirical PM6 and PM7 methods. Electron affinity (A) and electronegativity (?) of flavylium cation, and ionization potential (I) of quinoidal base were significantly correlated with radical scavenging activities of anthocyanins. These descriptors were used as independent variables for QSAR models. ANFIS models with two triangular-shaped input fuzzy functions for each independent variable were constructed and optimized by 100 learning epochs. The constructed models using descriptors calculated by both PM6 and PM7 had good prediction efficiency with Q-square of 0.82 and 0.86, respectively. PMID:25153627

  4. Adaptive Neuro-Fuzzy Inference System Applied QSAR with Quantum Chemical Descriptors for Predicting Radical Scavenging Activities of Carotenoids

    PubMed Central

    Jhin, Changho; Hwang, Keum Taek

    2015-01-01

    One of the physiological characteristics of carotenoids is their radical scavenging activity. In this study, the relationship between radical scavenging activities and quantum chemical descriptors of carotenoids was determined. Adaptive neuro-fuzzy inference system (ANFIS) applied quantitative structure-activity relationship models (QSAR) were also developed for predicting and comparing radical scavenging activities of carotenoids. Semi-empirical PM6 and PM7 quantum chemical calculations were done by MOPAC. Ionisation energies of neutral and monovalent cationic carotenoids and the product of chemical potentials of neutral and monovalent cationic carotenoids were significantly correlated with the radical scavenging activities, and consequently these descriptors were used as independent variables for the QSAR study. The ANFIS applied QSAR models were developed with two triangular-shaped input membership functions made for each of the independent variables and optimised by a backpropagation method. High prediction efficiencies were achieved by the ANFIS applied QSAR. The R-square values of the developed QSAR models with the variables calculated by PM6 and PM7 methods were 0.921 and 0.902, respectively. The results of this study demonstrated reliabilities of the selected quantum chemical descriptors and the significance of QSAR models. PMID:26474167

  5. Drought prediction using co-active neuro-fuzzy inference system, validation, and uncertainty analysis (case study: Birjand, Iran)

    NASA Astrophysics Data System (ADS)

    Memarian, Hadi; Pourreza Bilondi, Mohsen; Rezaei, Majid

    2015-06-01

    This work aims to assess the capability of co-active neuro-fuzzy inference system (CANFIS) for drought forecasting of Birjand, Iran through the combination of global climatic signals with rainfall and lagged values of Standardized Precipitation Index (SPI) index. Using stepwise regression and correlation analyses, the signals NINO 1 + 2, NINO 3, Multivariate Enso Index, Tropical Southern Atlantic index, Atlantic Multi-decadal Oscillation index, and NINO 3.4 were recognized as the effective signals on the drought event in Birjand. Based on the results from stepwise regression analysis and regarding the processor limitations, eight models were extracted for further processing by CANFIS. The metrics P-factor and D-factor were utilized for uncertainty analysis, based on the sequential uncertainty fitting algorithm. Sensitivity analysis showed that for all models, NINO indices and rainfall variable had the largest impact on network performance. In model 4 (as the model with the lowest error during training and testing processes), NINO 1 + 2(t-5) with an average sensitivity of 0.7 showed the highest impact on network performance. Next, the variables rainfall, NINO 1 + 2(t), and NINO 3(t-6) with the average sensitivity of 0.59, 0.28, and 0.28, respectively, could have the highest effect on network performance. The findings based on network performance metrics indicated that the global indices with a time lag represented a better correlation with El Niño Southern Oscillation (ENSO). Uncertainty analysis of the model 4 demonstrated that 68 % of the observed data were bracketed by the 95PPU and D-Factor value (0.79) was also within a reasonable range. Therefore, the fourth model with a combination of the input variables NINO 1 + 2 (with 5 months of lag and without any lag), monthly rainfall, and NINO 3 (with 6 months of lag) and correlation coefficient of 0.903 (between observed and simulated SPI) was selected as the most accurate model for drought forecasting using CANFIS in the climatic region of Birjand.

  6. Using adaptive neuro-fuzzy inference system technique for crosstalk correction in simultaneous 99mTc/201Tl SPECT imaging: A Monte Carlo simulation study

    NASA Astrophysics Data System (ADS)

    Heidary, Saeed; Setayeshi, Saeed

    2015-01-01

    This work presents a simulation based study by Monte Carlo which uses two adaptive neuro-fuzzy inference systems (ANFIS) for cross talk compensation of simultaneous 99mTc/201Tl dual-radioisotope SPECT imaging. We have compared two neuro-fuzzy systems based on fuzzy c-means (FCM) and subtractive (SUB) clustering. Our approach incorporates eight energy-windows image acquisition from 28 keV to 156 keV and two main photo peaks of 201Tl (77±10% keV) and 99mTc (140±10% keV). The Geant4 application in emission tomography (GATE) is used as a Monte Carlo simulator for three cylindrical and a NURBS Based Cardiac Torso (NCAT) phantom study. Three separate acquisitions including two single-isotopes and one dual isotope were performed in this study. Cross talk and scatter corrected projections are reconstructed by an iterative ordered subsets expectation maximization (OSEM) algorithm which models the non-uniform attenuation in the projection/back-projection. ANFIS-FCM/SUB structures are tuned to create three to sixteen fuzzy rules for modeling the photon cross-talk of the two radioisotopes. Applying seven to nine fuzzy rules leads to a total improvement of the contrast and the bias comparatively. It is found that there is an out performance for the ANFIS-FCM due to its acceleration and accurate results.

  7. Usage of case-based reasoning, neural network and adaptive neuro-fuzzy inference system classification techniques in breast cancer dataset classification diagnosis.

    PubMed

    Huang, Mei-Ling; Hung, Yung-Hsiang; Lee, Wen-Ming; Li, R K; Wang, Tzu-Hao

    2012-04-01

    Breast cancer is a common to females worldwide. Today, technological advancements in cancer treatment innovations have increased the survival rates. Many theoretical and experimental studies have shown that a multiple classifier system is an effective technique for reducing prediction errors. This study compared the particle swarm optimizer (PSO) based artificial neural network (ANN), the adaptive neuro-fuzzy inference system (ANFIS), and a case-based reasoning (CBR) classifier with a logistic regression model and decision tree model. It also applied three classification techniques to the Mammographic Mass Data Set, and measured its improvements in accuracy and classification errors. The experimental results showed that, the best CBR-based classification accuracy is 83.60%, and the classification accuracies of the PSO-based ANN classifier and ANFIS are 91.10% and 92.80%, respectively. PMID:20703710

  8. An adaptive neuro fuzzy inference system controlled space cector pulse width modulation based HVDC light transmission system under AC fault conditions

    NASA Astrophysics Data System (ADS)

    Ajay Kumar, M.; Srikanth, N.

    2014-03-01

    In HVDC Light transmission systems, converter control is one of the major fields of present day research works. In this paper, fuzzy logic controller is utilized for controlling both the converters of the space vector pulse width modulation (SVPWM) based HVDC Light transmission systems. Due to its complexity in the rule base formation, an intelligent controller known as adaptive neuro fuzzy inference system (ANFIS) controller is also introduced in this paper. The proposed ANFIS controller changes the PI gains automatically for different operating conditions. A hybrid learning method which combines and exploits the best features of both the back propagation algorithm and least square estimation method is used to train the 5-layer ANFIS controller. The performance of the proposed ANFIS controller is compared and validated with the fuzzy logic controller and also with the fixed gain conventional PI controller. The simulations are carried out in the MATLAB/SIMULINK environment. The results reveal that the proposed ANFIS controller is reducing power fluctuations at both the converters. It also improves the dynamic performance of the test power system effectively when tested for various ac fault conditions.

  9. An exploratory investigation of an adaptive neuro fuzzy inference system (ANFIS) for estimating hydrometeors from TRMM/TMI in synergy with TRMM/PR

    NASA Astrophysics Data System (ADS)

    Islam, Tanvir; Srivastava, Prashant K.; Rico-Ramirez, Miguel A.; Dai, Qiang; Han, Dawei; Gupta, Manika

    2014-08-01

    The authors have investigated an adaptive neuro fuzzy inference system (ANFIS) for the estimation of hydrometeors from the TRMM microwave imager (TMI). The proposed algorithm, named as Hydro-Rain algorithm, is developed in synergy with the TRMM precipitation radar (PR) observed hydrometeor information. The method retrieves rain rates by exploiting the synergistic relations between the TMI and PR observations in twofold steps. First, the fundamental hydrometeor parameters, liquid water path (LWP) and ice water path (IWP), are estimated from the TMI brightness temperatures. Next, the rain rates are estimated from the retrieved hydrometeor parameters (LWP and IWP). A comparison of the hydrometeor retrievals by the Hydro-Rain algorithm is done with the TRMM PR 2A25 and GPROF 2A12 algorithms. The results reveal that the Hydro-Rain algorithm has good skills in estimating hydrometeor paths LWP and IWP, as well as surface rain rate. An examination of the Hydro-Rain algorithm is also conducted on a super typhoon case, in which the Hydro-Rain has shown very good performance in reproducing the typhoon field. Nevertheless, the passive microwave based estimate of hydrometeors appears to suffer in high rain rate regimes, and as the rain rate increases, the discrepancies with hydrometeor estimates tend to increase as well.

  10. Use of an adaptive neuro-fuzzy inference system to obtain the correspondence among balance, gait, and depression for Parkinson's disease

    NASA Astrophysics Data System (ADS)

    Woo, Youngkeun; Lee, Juwon; Hwang, Sujin; Hong, Cheol Pyo

    2013-03-01

    The purpose of this study was to investigate the associations between gait performance, postural stability, and depression in patients with Parkinson's disease (PD) by using an adaptive neuro-fuzzy inference system (ANFIS). Twenty-two idiopathic PD patients were assessed during outpatient physical therapy by using three clinical tests: the Berg balance scale (BBS), Dynamic gait index (DGI), and Geriatric depression scale (GDS). Scores were determined from clinical observation and patient interviews, and associations among gait performance, postural stability, and depression in this PD population were evaluated. The DGI showed significant positive correlation with the BBS scores, and negative correlation with the GDS score. We assessed the relationship between the BBS score and the DGI results by using a multiple regression analysis. In this case, the GDS score was not significantly associated with the DGI, but the BBS and DGI results were. Strikingly, the ANFIS-estimated value of the DGI, based on the BBS and the GDS scores, significantly correlated with the walking ability determined by using the DGI in patients with Parkinson's disease. These findings suggest that the ANFIS techniques effectively reflect and explain the multidirectional phenomena or conditions of gait performance in patients with PD.

  11. Design of an expert system based on neuro-fuzzy inference analyzer for on-line microstructural characterization using magnetic NDT method

    NASA Astrophysics Data System (ADS)

    Ghanei, S.; Vafaeenezhad, H.; Kashefi, M.; Eivani, A. R.; Mazinani, M.

    2015-04-01

    Tracing microstructural evolution has a significant importance and priority in manufacturing lines of dual-phase steels. In this paper, an artificial intelligence method is presented for on-line microstructural characterization of dual-phase steels. A new method for microstructure characterization based on the theory of magnetic Barkhausen noise nondestructive testing method is introduced using adaptive neuro-fuzzy inference system (ANFIS). In order to predict the accurate martensite volume fraction of dual-phase steels while eliminating the effect and interference of frequency on the magnetic Barkhausen noise outputs, the magnetic responses were fed into the ANFIS structure in terms of position, height and width of the Barkhausen profiles. The results showed that ANFIS approach has the potential to detect and characterize microstructural evolution while the considerable effect of the frequency on magnetic outputs is overlooked. In fact implementing multiple outputs simultaneously enables ANFIS to approach to the accurate results using only height, position and width of the magnetic Barkhausen noise peaks without knowing the value of the used frequency.

  12. Neuro-fuzzy control of vertical vibrations in railcars using magnetorheological dampers 

    E-print Network

    Atray, Vipul Sunil

    2002-01-01

    -fuzzy controller. A pair of magnetorheological (MR) dampers is designed and installed in a rail truck. Two neuro-fuzzy systems, Adaptive Neuro-Fuzzy Inference System (ANFIS) and Neuro Fuzzy Controller (NEFCON), are used to emulate behavior of the MR dampers...

  13. Expert system to predict effects of noise pollution on operators of power plant using neuro-fuzzy approach.

    PubMed

    Ahmed, Hameed Kaleel; Zulquernain, Mallick

    2009-01-01

    Ration power plants, to generate power, have become common worldwide. One such one is the steam power plant. In such plants, various moving parts of heavy machines generate a lot of noise. Operators are subjected to high levels of noise. High noise level exposure leads to psychological as well physiological problems; different kinds of ill effects. It results in deteriorated work efficiency, although the exact nature of work performance is still unknown. To predict work efficiency deterioration, neuro-fuzzy tools are being used in research. It has been established that a neuro-fuzzy computing system helps in identification and analysis of fuzzy models. The last decade has seen substantial growth in development of various neuro-fuzzy systems. Among them, adaptive neuro-fuzzy inference system provides a systematic and directed approach for model building and gives the best possible design parameters in minimum possible time. This study aims to develop a neuro-fuzzy model to predict the effects of noise pollution on human work efficiency as a function of noise level, exposure time, and age of the operators doing complex type of task. PMID:19805930

  14. Classification of diabetes maculopathy images using data-adaptive neuro-fuzzy inference classifier.

    PubMed

    Ibrahim, Sulaimon; Chowriappa, Pradeep; Dua, Sumeet; Acharya, U Rajendra; Noronha, Kevin; Bhandary, Sulatha; Mugasa, Hatwib

    2015-12-01

    Prolonged diabetes retinopathy leads to diabetes maculopathy, which causes gradual and irreversible loss of vision. It is important for physicians to have a decision system that detects the early symptoms of the disease. This can be achieved by building a classification model using machine learning algorithms. Fuzzy logic classifiers group data elements with a degree of membership in multiple classes by defining membership functions for each attribute. Various methods have been proposed to determine the partitioning of membership functions in a fuzzy logic inference system. A clustering method partitions the membership functions by grouping data that have high similarity into clusters, while an equalized universe method partitions data into predefined equal clusters. The distribution of each attribute determines its partitioning as fine or coarse. A simple grid partitioning partitions each attribute equally and is therefore not effective in handling varying distribution amongst the attributes. A data-adaptive method uses a data frequency-driven approach to partition each attribute based on the distribution of data in that attribute. A data-adaptive neuro-fuzzy inference system creates corresponding rules for both finely distributed and coarsely distributed attributes. This method produced more useful rules and a more effective classification system. We obtained an overall accuracy of 98.55 %. PMID:26109519

  15. System identification of smart structures using a wavelet neuro-fuzzy model

    NASA Astrophysics Data System (ADS)

    Mitchell, Ryan; Kim, Yeesock; El-Korchi, Tahar

    2012-11-01

    This paper proposes a complex model of smart structures equipped with magnetorheological (MR) dampers. Nonlinear behavior of the structure-MR damper systems is represented by the use of a wavelet-based adaptive neuro-fuzzy inference system (WANFIS). The WANFIS is developed through the integration of wavelet transforms, artificial neural networks, and fuzzy logic theory. To evaluate the effectiveness of the WANFIS model, a three-story building employing an MR damper under a variety of natural hazards is investigated. An artificial earthquake is used for training the input-output mapping of the WANFIS model. The artificial earthquake is generated such that the characteristics of a variety of real recorded earthquakes are included. It is demonstrated that this new WANFIS approach is effective in modeling nonlinear behavior of the structure-MR damper system subjected to a variety of disturbances while resulting in shorter training times in comparison with an adaptive neuro-fuzzy inference system (ANFIS) model. Comparison with high fidelity data proves the viability of the proposed approach in a structural health monitoring setting, and it is validated using known earthquake signals such as El-Centro, Kobe, Northridge, and Hachinohe.

  16. Adaptive Neuro-Fuzzy Inference System (ANFIS)-Based Models for Predicting the Weld Bead Width and Depth of Penetration from the Infrared Thermal Image of the Weld Pool

    NASA Astrophysics Data System (ADS)

    Subashini, L.; Vasudevan, M.

    2012-02-01

    Type 316 LN stainless steel is the major structural material used in the construction of nuclear reactors. Activated flux tungsten inert gas (A-TIG) welding has been developed to increase the depth of penetration because the depth of penetration achievable in single-pass TIG welding is limited. Real-time monitoring and control of weld processes is gaining importance because of the requirement of remoter welding process technologies. Hence, it is essential to develop computational methodologies based on an adaptive neuro fuzzy inference system (ANFIS) or artificial neural network (ANN) for predicting and controlling the depth of penetration and weld bead width during A-TIG welding of type 316 LN stainless steel. In the current work, A-TIG welding experiments have been carried out on 6-mm-thick plates of 316 LN stainless steel by varying the welding current. During welding, infrared (IR) thermal images of the weld pool have been acquired in real time, and the features have been extracted from the IR thermal images of the weld pool. The welding current values, along with the extracted features such as length, width of the hot spot, thermal area determined from the Gaussian fit, and thermal bead width computed from the first derivative curve were used as inputs, whereas the measured depth of penetration and weld bead width were used as output of the respective models. Accurate ANFIS models have been developed for predicting the depth of penetration and the weld bead width during TIG welding of 6-mm-thick 316 LN stainless steel plates. A good correlation between the measured and predicted values of weld bead width and depth of penetration were observed in the developed models. The performance of the ANFIS models are compared with that of the ANN models.

  17. 3D City Model Generator: The Application of Neuro-Fuzzy Systems in CAD

    E-print Network

    163 3D City Model Generator: The Application of Neuro-Fuzzy Systems in CAD Yoshihiro Kobayashi that generates 3D city models from satellite images is formulated, implemented, and tested. Techniques from operations. Therefore, it is expected to develop a system that will generate 3D city models more easily

  18. Adaptive neuro-fuzzy prediction of modulation transfer function of optical lens system

    NASA Astrophysics Data System (ADS)

    Petkovi?, Dalibor; Shamshirband, Shahaboddin; Anuar, Nor Badrul; Md Nasir, Mohd Hairul Nizam; Pavlovi?, Nenad T.; Akib, Shatirah

    2014-07-01

    The quantitative assessment of image quality is an important consideration in any type of imaging system. The modulation transfer function (MTF) is a graphical description of the sharpness and contrast of an imaging system or of its individual components. The MTF is also known and spatial frequency response. The MTF curve has different meanings according to the corresponding frequency. The MTF of an optical system specifies the contrast transmitted by the system as a function of image size, and is determined by the inherent optical properties of the system. In this study, the adaptive neuro-fuzzy (ANFIS) estimator is designed and adapted to predict MTF value of the actual optical system. Neural network in ANFIS adjusts parameters of membership function in the fuzzy logic of the fuzzy inference system. The back propagation learning algorithm is used for training this network. This intelligent estimator is implemented using MATLAB/Simulink and the performances are investigated. The simulation results presented in this paper show the effectiveness of the developed method.

  19. Modulation transfer function estimation of optical lens system by adaptive neuro-fuzzy methodology

    NASA Astrophysics Data System (ADS)

    Petkovi?, Dalibor; Shamshirband, Shahaboddin; Pavlovi?, Nenad T.; Anuar, Nor Badrul; Kiah, Miss Laiha Mat

    2014-07-01

    The quantitative assessment of image quality is an important consideration in any type of imaging system. The modulation transfer function (MTF) is a graphical description of the sharpness and contrast of an imaging system or of its individual components. The MTF is also known and spatial frequency response. The MTF curve has different meanings according to the corresponding frequency. The MTF of an optical system specifies the contrast transmitted by the system as a function of image size, and is determined by the inherent optical properties of the system. In this study, the adaptive neuro-fuzzy (ANFIS) estimator is designed and adapted to estimate MTF value of the actual optical system. Neural network in ANFIS adjusts parameters of membership function in the fuzzy logic of the fuzzy inference system. The back propagation learning algorithm is used for training this network. This intelligent estimator is implemented using Matlab/Simulink and the performances are investigated. The simulation results presented in this paper show the effectiveness of the developed method.

  20. Inference of S-wave velocities from well logs using a Neuro-Fuzzy Logic (NFL) approach

    NASA Astrophysics Data System (ADS)

    Aldana, Milagrosa; Coronado, Ronal; Hurtado, Nuri

    2010-05-01

    The knowledge of S-wave velocity values is important for a complete characterization and understanding of reservoir rock properties. It could help in determining fracture propagation and also to improve porosity prediction (Cuddy and Glover, 2002). Nevertheless the acquisition of S-wave velocity data is rather expensive; hence, for most reservoirs usually this information is not available. In the present work we applied a hybrid system, that combines Neural Networks and Fuzzy Logic, in order to infer S-wave velocities from porosity (?), water saturation (Sw) and shale content (Vsh) logs. The Neuro-Fuzzy Logic (NFL) technique was tested in two wells from the Guafita oil field, Apure Basin, Venezuela. We have trained the system using 50% of the data randomly taken from one of the wells, in order to obtain the inference equations (Takani-Sugeno-Kang (TSK) fuzzy model). Equations using just one of the parameters as input (i.e. ??, Sw or Vsh), combined by pairs and all together were obtained. These equations were tested in the whole well. The results indicate that the best inference (correlation between inferred and experimental data close to 80%) is obtained when all the parameters are considered as input data. An increase of the equation number of the TSK model, when one or just two parameters are used, does not improve the performance of the NFL. The best set of equations was tested in a nearby well. The results suggest that the large difference in the petrophysical and lithological characteristics between these two wells, avoid a good inference of S-wave velocities in the tested well and allowed us to analyze the limitations of the method.

  1. A Neuro-Fuzzy System for Extracting Environment Features Based on Ultrasonic Sensors

    PubMed Central

    Marichal, Graciliano Nicolás; Hernández, Angela; Acosta, Leopoldo; González, Evelio José

    2009-01-01

    In this paper, a method to extract features of the environment based on ultrasonic sensors is presented. A 3D model of a set of sonar systems and a workplace has been developed. The target of this approach is to extract in a short time, while the vehicle is moving, features of the environment. Particularly, the approach shown in this paper has been focused on determining walls and corners, which are very common environment features. In order to prove the viability of the devised approach, a 3D simulated environment has been built. A Neuro-Fuzzy strategy has been used in order to extract environment features from this simulated model. Several trials have been carried out, obtaining satisfactory results in this context. After that, some experimental tests have been conducted using a real vehicle with a set of sonar systems. The obtained results reveal the satisfactory generalization properties of the approach in this case. PMID:22303160

  2. A neuro-fuzzy system for extracting environment features based on ultrasonic sensors.

    PubMed

    Marichal, Graciliano Nicolás; Hernández, Angela; Acosta, Leopoldo; González, Evelio José

    2009-01-01

    In this paper, a method to extract features of the environment based on ultrasonic sensors is presented. A 3D model of a set of sonar systems and a workplace has been developed. The target of this approach is to extract in a short time, while the vehicle is moving, features of the environment. Particularly, the approach shown in this paper has been focused on determining walls and corners, which are very common environment features. In order to prove the viability of the devised approach, a 3D simulated environment has been built. A Neuro-Fuzzy strategy has been used in order to extract environment features from this simulated model. Several trials have been carried out, obtaining satisfactory results in this context. After that, some experimental tests have been conducted using a real vehicle with a set of sonar systems. The obtained results reveal the satisfactory generalization properties of the approach in this case. PMID:22303160

  3. Multi Groups Cooperation based Symbiotic Evolution for TSK-type Neuro-Fuzzy Systems Design

    PubMed Central

    Cheng, Yi-Chang; Hsu, Yung-Chi

    2010-01-01

    In this paper, a TSK-type neuro-fuzzy system with multi groups cooperation based symbiotic evolution method (TNFS-MGCSE) is proposed. The TNFS-MGCSE is developed from symbiotic evolution. The symbiotic evolution is different from traditional GAs (genetic algorithms) that each chromosome in symbiotic evolution represents a rule of fuzzy model. The MGCSE is different from the traditional symbiotic evolution; with a population in MGCSE is divided to several groups. Each group formed by a set of chromosomes represents a fuzzy rule and cooperate with other groups to generate the better chromosomes by using the proposed cooperation based crossover strategy (CCS). In this paper, the proposed TNFS-MGCSE is used to evaluate by numerical examples (Mackey-Glass chaotic time series and sunspot number forecasting). The performance of the TNFS-MGCSE achieves excellently with other existing models in the simulations. PMID:21709856

  4. Supervised and Dynamic Neuro-Fuzzy Systems to Classify Physiological Responses in Robot-Assisted Neurorehabilitation

    PubMed Central

    Almonacid, Miguel; Cano-Izquierdo, José M.; Sabater-Navarro, José M.; Fernández, Eduardo

    2015-01-01

    This paper presents the application of an Adaptive Resonance Theory (ART) based on neural networks combined with Fuzzy Logic systems to classify physiological reactions of subjects performing robot-assisted rehabilitation therapies. First, the theoretical background of a neuro-fuzzy classifier called S-dFasArt is presented. Then, the methodology and experimental protocols to perform a robot-assisted neurorehabilitation task are described. Our results show that the combination of the dynamic nature of S-dFasArt classifier with a supervisory module are very robust and suggest that this methodology could be very useful to take into account emotional states in robot-assisted environments and help to enhance and better understand human-robot interactions. PMID:26001214

  5. A novel multi-model neuro-fuzzy-based MPPT for three-phase grid-connected photovoltaic system

    SciTech Connect

    Chaouachi, Aymen; Kamel, Rashad M.; Nagasaka, Ken

    2010-12-15

    This paper presents a novel methodology for Maximum Power Point Tracking (MPPT) of a grid-connected 20 kW photovoltaic (PV) system using neuro-fuzzy network. The proposed method predicts the reference PV voltage guarantying optimal power transfer between the PV generator and the main utility grid. The neuro-fuzzy network is composed of a fuzzy rule-based classifier and three multi-layered feed forwarded Artificial Neural Networks (ANN). Inputs of the network (irradiance and temperature) are classified before they are fed into the appropriated ANN for either training or estimation process while the output is the reference voltage. The main advantage of the proposed methodology, comparing to a conventional single neural network-based approach, is the distinct generalization ability regarding to the nonlinear and dynamic behavior of a PV generator. In fact, the neuro-fuzzy network is a neural network based multi-model machine learning that defines a set of local models emulating the complex and nonlinear behavior of a PV generator under a wide range of operating conditions. Simulation results under several rapid irradiance variations proved that the proposed MPPT method fulfilled the highest efficiency comparing to a conventional single neural network and the Perturb and Observe (P and O) algorithm dispositive. (author)

  6. Prediction of Breeding Values for Dairy Cattle Using Artificial Neural Networks and Neuro-Fuzzy Systems

    PubMed Central

    Shahinfar, Saleh; Mehrabani-Yeganeh, Hassan; Lucas, Caro; Kalhor, Ahmad; Kazemian, Majid; Weigel, Kent A.

    2012-01-01

    Developing machine learning and soft computing techniques has provided many opportunities for researchers to establish new analytical methods in different areas of science. The objective of this study is to investigate the potential of two types of intelligent learning methods, artificial neural networks and neuro-fuzzy systems, in order to estimate breeding values (EBV) of Iranian dairy cattle. Initially, the breeding values of lactating Holstein cows for milk and fat yield were estimated using conventional best linear unbiased prediction (BLUP) with an animal model. Once that was established, a multilayer perceptron was used to build ANN to predict breeding values from the performance data of selection candidates. Subsequently, fuzzy logic was used to form an NFS, a hybrid intelligent system that was implemented via a local linear model tree algorithm. For milk yield the correlations between EBV and EBV predicted by the ANN and NFS were 0.92 and 0.93, respectively. Corresponding correlations for fat yield were 0.93 and 0.93, respectively. Correlations between multitrait predictions of EBVs for milk and fat yield when predicted simultaneously by ANN were 0.93 and 0.93, respectively, whereas corresponding correlations with reference EBV for multitrait NFS were 0.94 and 0.95, respectively, for milk and fat production. PMID:22991575

  7. Neuro-fuzzy controller to navigate an unmanned vehicle.

    PubMed

    Selma, Boumediene; Chouraqui, Samira

    2013-12-01

    A Neuro-fuzzy control method for an Unmanned Vehicle (UV) simulation is described. The objective is guiding an autonomous vehicle to a desired destination along a desired path in an environment characterized by a terrain and a set of distinct objects, such as obstacles like donkey traffic lights and cars circulating in the trajectory. The autonomous navigate ability and road following precision are mainly influenced by its control strategy and real-time control performance. Fuzzy Logic Controller can very well describe the desired system behavior with simple "if-then" relations owing the designer to derive "if-then" rules manually by trial and error. On the other hand, Neural Networks perform function approximation of a system but cannot interpret the solution obtained neither check if its solution is plausible. The two approaches are complementary. Combining them, Neural Networks will allow learning capability while Fuzzy-Logic will bring knowledge representation (Neuro-Fuzzy). In this paper, an artificial neural network fuzzy inference system (ANFIS) controller is described and implemented to navigate the autonomous vehicle. Results show several improvements in the control system adjusted by neuro-fuzzy techniques in comparison to the previous methods like Artificial Neural Network (ANN). PMID:23705105

  8. Adaptive neuro-fuzzy and fuzzy decision tree classifiers as applied to seafloor characterization

    NASA Astrophysics Data System (ADS)

    Stepnowski, A.; Moszy?ski, M.; van Dung, Tran

    2003-03-01

    This paper investigates the influence of various backscattered echo parameters collected at an echosounder frequency of 200 kHz on the performance of the neuro-fuzzy and fuzzy decision tree classifiers of a seabed. In particular, the wavelet coefficients of the bottom echo were investigated along with other echo parameters like energy, amplitude, slope of the falling part of the echo, etc. The data were processed in an Adaptive Neuro Fuzzy Inference System (ANFIS), which was implemented in two multistage structures, viz.; Incremental Fuzzy Neural Network (IFNN) and Aggregated Fuzzy Neural Network (AFNN). The number of input parameters for the networks was reduced by using the Principal Component Analysis (PCA). A fuzzy decision tree algorithm was developed and used directly (without PCA data reduction) in the classification procedure utilizing the same data. The performances of both approaches were analyzed and compared.

  9. Aalborg Universitet Methanol Reformer System Modeling and Control using an Adaptive Neuro-Fuzzy

    E-print Network

    Andreasen, Søren Juhl

    system implemented with the system of the electric vehicle. The presented method for controlling is to superimpose a cooling flow on the burner process air. Modeling A dynamic model is derived and implemented flow as inputs, are trained on data acquired from laboratory tests. The reformer temperature and fuel

  10. Neuro-Fuzzy Computational Technique to Control Load Frequency in Hydro-Thermal Interconnected Power System

    NASA Astrophysics Data System (ADS)

    Prakash, S.; Sinha, S. K.

    2015-09-01

    In this research work, two areas hydro-thermal power system connected through tie-lines is considered. The perturbation of frequencies at the areas and resulting tie line power flows arise due to unpredictable load variations that cause mismatch between the generated and demanded powers. Due to rising and falling power demand, the real and reactive power balance is harmed; hence frequency and voltage get deviated from nominal value. This necessitates designing of an accurate and fast controller to maintain the system parameters at nominal value. The main purpose of system generation control is to balance the system generation against the load and losses so that the desired frequency and power interchange between neighboring systems are maintained. The intelligent controllers like fuzzy logic, artificial neural network (ANN) and hybrid fuzzy neural network approaches are used for automatic generation control for the two area interconnected power systems. Area 1 consists of thermal reheat power plant whereas area 2 consists of hydro power plant with electric governor. Performance evaluation is carried out by using intelligent (ANFIS, ANN and fuzzy) control and conventional PI and PID control approaches. To enhance the performance of controller sliding surface i.e. variable structure control is included. The model of interconnected power system has been developed with all five types of said controllers and simulated using MATLAB/SIMULINK package. The performance of the intelligent controllers has been compared with the conventional PI and PID controllers for the interconnected power system. A comparison of ANFIS, ANN, Fuzzy and PI, PID based approaches shows the superiority of proposed ANFIS over ANN, fuzzy and PI, PID. Thus the hybrid fuzzy neural network controller has better dynamic response i.e., quick in operation, reduced error magnitude and minimized frequency transients.

  11. Use of an adaptive neuro-fuzzy system to characterize root distribution patterns

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Root-soil relationships are pivotal to understanding crop growth and function in a changing environmental. Plant root systems are difficult to measure and remain understudied relative to above ground responses. High variation among field samples often leads to non-significance when standard statist...

  12. Predictability in space launch vehicle anomaly detection using intelligent neuro-fuzzy systems

    NASA Technical Reports Server (NTRS)

    Gulati, Sandeep; Toomarian, Nikzad; Barhen, Jacob; Maccalla, Ayanna; Tawel, Raoul; Thakoor, Anil; Daud, Taher

    1994-01-01

    Included in this viewgraph presentation on intelligent neuroprocessors for launch vehicle health management systems (HMS) are the following: where the flight failures have been in launch vehicles; cumulative delay time; breakdown of operations hours; failure of Mars Probe; vehicle health management (VHM) cost optimizing curve; target HMS-STS auxiliary power unit location; APU monitoring and diagnosis; and integration of neural networks and fuzzy logic.

  13. Prediction of Conductivity by Adaptive Neuro-Fuzzy Model

    PubMed Central

    Akbarzadeh, S.; Arof, A. K.; Ramesh, S.; Khanmirzaei, M. H.; Nor, R. M.

    2014-01-01

    Electrochemical impedance spectroscopy (EIS) is a key method for the characterizing the ionic and electronic conductivity of materials. One of the requirements of this technique is a model to forecast conductivity in preliminary experiments. The aim of this paper is to examine the prediction of conductivity by neuro-fuzzy inference with basic experimental factors such as temperature, frequency, thickness of the film and weight percentage of salt. In order to provide the optimal sets of fuzzy logic rule bases, the grid partition fuzzy inference method was applied. The validation of the model was tested by four random data sets. To evaluate the validity of the model, eleven statistical features were examined. Statistical analysis of the results clearly shows that modeling with an adaptive neuro-fuzzy is powerful enough for the prediction of conductivity. PMID:24658582

  14. Hydrological time series modeling: A comparison between adaptive neuro-fuzzy, neural network and autoregressive techniques

    NASA Astrophysics Data System (ADS)

    Lohani, A. K.; Kumar, Rakesh; Singh, R. D.

    2012-06-01

    SummaryTime series modeling is necessary for the planning and management of reservoirs. More recently, the soft computing techniques have been used in hydrological modeling and forecasting. In this study, the potential of artificial neural networks and neuro-fuzzy system in monthly reservoir inflow forecasting are examined by developing and comparing monthly reservoir inflow prediction models, based on autoregressive (AR), artificial neural networks (ANNs) and adaptive neural-based fuzzy inference system (ANFIS). To take care the effect of monthly periodicity in the flow data, cyclic terms are also included in the ANN and ANFIS models. Working with time series flow data of the Sutlej River at Bhakra Dam, India, several ANN and adaptive neuro-fuzzy models are trained with different input vectors. To evaluate the performance of the selected ANN and adaptive neural fuzzy inference system (ANFIS) models, comparison is made with the autoregressive (AR) models. The ANFIS model trained with the input data vector including previous inflows and cyclic terms of monthly periodicity has shown a significant improvement in the forecast accuracy in comparison with the ANFIS models trained with the input vectors considering only previous inflows. In all cases ANFIS gives more accurate forecast than the AR and ANN models. The proposed ANFIS model coupled with the cyclic terms is shown to provide better representation of the monthly inflow forecasting for planning and operation of reservoir.

  15. Stock trading using RSPOP: a novel rough set-based neuro-fuzzy approach.

    PubMed

    Ang, Kai Keng; Quek, Chai

    2006-09-01

    This paper investigates the method of forecasting stock price difference on artificially generated price series data using neuro-fuzzy systems and neural networks. As trading profits is more important to an investor than statistical performance, this paper proposes a novel rough set-based neuro-fuzzy stock trading decision model called stock trading using rough set-based pseudo outer-product (RSPOP) which synergizes the price difference forecast method with a forecast bottleneck free trading decision model. The proposed stock trading with forecast model uses the pseudo outer-product based fuzzy neural network using the compositional rule of inference [POPFNN-CRI(S)] with fuzzy rules identified using the RSPOP algorithm as the underlying predictor model and simple moving average trading rules in the stock trading decision model. Experimental results using the proposed stock trading with RSPOP forecast model on real world stock market data are presented. Trading profits in terms of portfolio end values obtained are benchmarked against stock trading with dynamic evolving neural-fuzzy inference system (DENFIS) forecast model, the stock trading without forecast model and the stock trading with ideal forecast model. Experimental results showed that the proposed model identified rules with greater interpretability and yielded significantly higher profits than the stock trading with DENFIS forecast model and the stock trading without forecast model. PMID:17001989

  16. Daily soil temperature modeling using neuro-fuzzy approach

    NASA Astrophysics Data System (ADS)

    Hosseinzadeh Talaee, P.

    2014-11-01

    Soil temperature is an important meteorological parameter which influences a number of processes in agriculture, hydrology, and environment. However, soil temperature records are not routinely available from meteorological stations. This work aimed to estimate daily soil temperature using the coactive neuro-fuzzy inference system (CANFIS) in arid and semiarid regions. For this purpose, daily soil temperatures were recorded at six depths of 5, 10, 20, 30, 50, and 100 cm below the surface at two synoptic stations in Iran. According to correlation analysis, mean, maximum, and minimum air temperatures, relative humidity, sunshine hours, and solar radiation were selected as the inputs of the CANFIS models. It was concluded that, in most cases, the best soil temperature estimates with a CANFIS model can be provided with the Takagi-Sugeno-Kang (TSK) fuzzy model and the Gaussian membership function. Comparison of the models' performances at arid and semiarid locations showed that the CANFIS models' performances in arid site were slightly better than those in semiarid site. Overall, the obtained results indicated the capabilities of the CANFIS model in estimating soil temperature in arid and semiarid regions.

  17. Recognition of Handwritten Arabic words using a neuro-fuzzy network

    SciTech Connect

    Boukharouba, Abdelhak; Bennia, Abdelhak

    2008-06-12

    We present a new method for the recognition of handwritten Arabic words based on neuro-fuzzy hybrid network. As a first step, connected components (CCs) of black pixels are detected. Then the system determines which CCs are sub-words and which are stress marks. The stress marks are then isolated and identified separately and the sub-words are segmented into graphemes. Each grapheme is described by topological and statistical features. Fuzzy rules are extracted from training examples by a hybrid learning scheme comprised of two phases: rule generation phase from data using a fuzzy c-means, and rule parameter tuning phase using gradient descent learning. After learning, the network encodes in its topology the essential design parameters of a fuzzy inference system.The contribution of this technique is shown through the significant tests performed on a handwritten Arabic words database.

  18. Quantification of sand fraction from seismic attributes using Neuro-Fuzzy approach

    NASA Astrophysics Data System (ADS)

    Verma, Akhilesh K.; Chaki, Soumi; Routray, Aurobinda; Mohanty, William K.; Jenamani, Mamata

    2014-12-01

    In this paper, we illustrate the modeling of a reservoir property (sand fraction) from seismic attributes namely seismic impedance, seismic amplitude, and instantaneous frequency using Neuro-Fuzzy (NF) approach. Input dataset includes 3D post-stacked seismic attributes and six well logs acquired from a hydrocarbon field located in the western coast of India. Presence of thin sand and shale layers in the basin area makes the modeling of reservoir characteristic a challenging task. Though seismic data is helpful in extrapolation of reservoir properties away from boreholes; yet, it could be challenging to delineate thin sand and shale reservoirs using seismic data due to its limited resolvability. Therefore, it is important to develop state-of-art intelligent methods for calibrating a nonlinear mapping between seismic data and target reservoir variables. Neural networks have shown its potential to model such nonlinear mappings; however, uncertainties associated with the model and datasets are still a concern. Hence, introduction of Fuzzy Logic (FL) is beneficial for handling these uncertainties. More specifically, hybrid variants of Artificial Neural Network (ANN) and fuzzy logic, i.e., NF methods, are capable for the modeling reservoir characteristics by integrating the explicit knowledge representation power of FL with the learning ability of neural networks. In this paper, we opt for ANN and three different categories of Adaptive Neuro-Fuzzy Inference System (ANFIS) based on clustering of the available datasets. A comparative analysis of these three different NF models (i.e., Sugeno-type fuzzy inference systems using a grid partition on the data (Model 1), using subtractive clustering (Model 2), and using Fuzzy c-means (FCM) clustering (Model 3)) and ANN suggests that Model 3 has outperformed its counterparts in terms of performance evaluators on the present dataset. Performance of the selected algorithms is evaluated in terms of correlation coefficients (CC), root mean square error (RMSE), absolute error mean (AEM) and scatter index (SI) between target and predicted sand fraction values. The achieved estimation accuracy may diverge minutely depending on geological characteristics of a particular study area. The documented results in this study demonstrate acceptable resemblance between target and predicted variables, and hence, encourage the application of integrated machine learning approaches such as Neuro-Fuzzy in reservoir characterization domain. Furthermore, visualization of the variation of sand probability in the study area would assist in identifying placement of potential wells for future drilling operations.

  19. Neuro-Fuzzy Phasing of Segmented Mirrors

    NASA Technical Reports Server (NTRS)

    Olivier, Philip D.

    1999-01-01

    A new phasing algorithm for segmented mirrors based on neuro-fuzzy techniques is described. A unique feature of this algorithm is the introduction of an observer bank. Its effectiveness is tested in a very simple model with remarkable success. The new algorithm requires much less computational effort than existing algorithms and therefore promises to be quite useful when implemented on more complex models.

  20. Neuro-Fuzzy Control of a Robotic Manipulator

    NASA Astrophysics Data System (ADS)

    Gierlak, P.; Muszy?ska, M.; ?ylski, W.

    2014-08-01

    In this paper, to solve the problem of control of a robotic manipulator's movement with holonomical constraints, an intelligent control system was used. This system is understood as a hybrid controller, being a combination of fuzzy logic and an artificial neural network. The purpose of the neuro-fuzzy system is the approximation of the nonlinearity of the robotic manipulator's dynamic to generate a compensatory control. The control system is designed in such a way as to permit modification of its properties under different operating conditions of the two-link manipulator

  1. Potential of neuro-fuzzy methodology to estimate noise level of wind turbines

    NASA Astrophysics Data System (ADS)

    Nikoli?, Vlastimir; Petkovi?, Dalibor; Por, Lip Yee; Shamshirband, Shahaboddin; Zamani, Mazdak; ?ojbaši?, Žarko; Motamedi, Shervin

    2016-01-01

    Wind turbines noise effect became large problem because of increasing of wind farms numbers since renewable energy becomes the most influential energy sources. However, wind turbine noise generation and propagation is not understandable in all aspects. Mechanical noise of wind turbines can be ignored since aerodynamic noise of wind turbine blades is the main source of the noise generation. Numerical simulations of the noise effects of the wind turbine can be very challenging task. Therefore in this article soft computing method is used to evaluate noise level of wind turbines. The main goal of the study is to estimate wind turbine noise in regard of wind speed at different heights and for different sound frequency. Adaptive neuro-fuzzy inference system (ANFIS) is used to estimate the wind turbine noise levels.

  2. Prediction of contact forces of underactuated finger by adaptive neuro fuzzy approach

    NASA Astrophysics Data System (ADS)

    Petkovi?, Dalibor; Shamshirband, Shahaboddin; Abbasi, Almas; Kiani, Kourosh; Al-Shammari, Eiman Tamah

    2015-12-01

    To obtain adaptive finger passive underactuation can be used. Underactuation principle can be used to adapt shapes of the fingers for grasping objects. The fingers with underactuation do not require control algorithm. In this study a kinetostatic model of the underactuated finger mechanism was analyzed. The underactuation is achieved by adding the compliance in every finger joint. Since the contact forces of the finger depend on contact position of the finger and object, it is suitable to make a prediction model for the contact forces in function of contact positions of the finger and grasping objects. In this study prediction of the contact forces was established by a soft computing approach. Adaptive neuro-fuzzy inference system (ANFIS) was applied as the soft computing method to perform the prediction of the finger contact forces.

  3. The strategy of building a flood forecast model by neuro-fuzzy network

    NASA Astrophysics Data System (ADS)

    Chen, Shen-Hsien; Lin, Yong-Huang; Chang, Li-Chiu; Chang, Fi-John

    2006-04-01

    A methodology is proposed for constructing a flood forecast model using the adaptive neuro-fuzzy inference system (ANFIS). This is based on a self-organizing rule-base generator, a feedforward network, and fuzzy control arithmetic. Given the rainfall-runoff patterns, ANFIS could systematically and effectively construct flood forecast models. The precipitation and flow data sets of the Choshui River in central Taiwan are analysed to identify the useful input variables and then the forecasting model can be self-constructed through ANFIS. The analysis results suggest that the persistent effect and upstream flow information are the key effects for modelling the flood forecast, and the watershed's average rainfall provides further information and enhances the accuracy of the model performance. For the purpose of comparison, the commonly used back-propagation neural network (BPNN) is also examined. The forecast results demonstrate that ANFIS is superior to the BPNN, and ANFIS can effectively and reliably construct an accurate flood forecast model.

  4. Applicability of neuro-fuzzy techniques in predicting ground-water vulnerability: a GIS-based sensitivity analysis

    NASA Astrophysics Data System (ADS)

    Dixon, B.

    2005-07-01

    Modeling groundwater vulnerability reliably and cost effectively for non-point source (NPS) pollution at a regional scale remains a major challenge. In recent years, Geographic Information Systems (GIS), neural networks and fuzzy logic techniques have been used in several hydrological studies. However, few of these research studies have undertaken an extensive sensitivity analysis. The overall objective of this research is to examine the sensitivity of neuro-fuzzy models used to predict groundwater vulnerability in a spatial context by integrating GIS and neuro-fuzzy techniques. The specific objectives are to assess the sensitivity of neuro-fuzzy models in a spatial domain using GIS by varying (i) shape of the fuzzy sets, (ii) number of fuzzy sets, and (iii) learning and validation parameters (including rule weights). The neuro-fuzzy models were developed using NEFCLASS-J software on a JAVA platform and were loosely integrated with a GIS. Four plausible parameters which are critical in transporting contaminants through the soil profile to the groundwater, included soil hydrologic group, depth of the soil profile, soil structure (pedality points) of the A horizon, and landuse. In order to validate the model predictions, coincidence reports were generated among model inputs, model predictions, and well/spring contamination data for NO 3-N. A total of 16 neuro-fuzzy models were developed for selected sub-basins of Illinois River Watershed, AR. The sensitivity analysis showed that neuro-fuzzy models were sensitive to the shape of the fuzzy sets, number of fuzzy sets, nature of the rule weights, and validation techniques used during the learning processes. Compared to bell-shaped and triangular-shaped membership functions, the neuro-fuzzy models with a trapezoidal membership function were the least sensitive to the various permutations and combinations of the learning and validation parameters. Over all, Models 11 and 8 showed relatively higher coincidence with well contamination data than other models. The strength of this method is that it offers a means of dealing with imprecise data, therefore, is a viable option for regional and continental scale environmental modeling where imprecise data prevail. The neuro-fuzzy models, however, should only be used as a tool within a broader framework of GIS, remote sensing and solute transport modeling to assess groundwater vulnerability along with functional, mechanistic and stochastic models.

  5. Adaptive Neuro-Fuzzy Methodology for Noise Assessment of Wind Turbine

    PubMed Central

    Shamshirband, Shahaboddin; Petkovi?, Dalibor; Hashim, Roslan; Motamedi, Shervin

    2014-01-01

    Wind turbine noise is one of the major obstacles for the widespread use of wind energy. Noise tone can greatly increase the annoyance factor and the negative impact on human health. Noise annoyance caused by wind turbines has become an emerging problem in recent years, due to the rapid increase in number of wind turbines, triggered by sustainable energy goals set forward at the national and international level. Up to now, not all aspects of the generation, propagation and perception of wind turbine noise are well understood. For a modern large wind turbine, aerodynamic noise from the blades is generally considered to be the dominant noise source, provided that mechanical noise is adequately eliminated. The sources of aerodynamic noise can be divided into tonal noise, inflow turbulence noise, and airfoil self-noise. Many analytical and experimental acoustical studies performed the wind turbines. Since the wind turbine noise level analyzing by numerical methods or computational fluid dynamics (CFD) could be very challenging and time consuming, soft computing techniques are preferred. To estimate noise level of wind turbine, this paper constructed a process which simulates the wind turbine noise levels in regard to wind speed and sound frequency with adaptive neuro-fuzzy inference system (ANFIS). This intelligent estimator is implemented using Matlab/Simulink and the performances are investigated. The simulation results presented in this paper show the effectiveness of the developed method. PMID:25075621

  6. EEG-based motor imagery classification using neuro-fuzzy prediction and wavelet fractal features.

    PubMed

    Hsu, Wei-Yen

    2010-06-15

    In this paper, a feature extraction method through the time-series prediction based on the adaptive neuro-fuzzy inference system (ANFIS) is proposed for brain-computer interface (BCI) applications. The ANFIS time-series prediction together with multiresolution fractal feature vectors (MFFVs) is applied for feature extraction in motor imagery (MI) classification. The features are extracted from the electroencephalography (EEG) signals recorded from subjects performing left and right MI. Two ANFISs are trained to perform time-series predictions for respective left and right MI data. Features obtained from the difference of MFFVs between the predicted and actual signals are then calculated through a window of EEG signals. Finally, a simple linear classifier, namely linear discriminant analysis (LDA), is used for classification. The proposed method is estimated with classification accuracy and the area under the receiver operating characteristics curve (AUC) on six subjects from two data sets. I also assess the performance of proposed method by comparing it with well-known linear adaptive autoregressive (AAR) model, AAR time-series prediction, and neural network (NN) time-series prediction. The results indicate that ANFIS time-series prediction together with MFFV features is a promising method in MI classification. PMID:20381529

  7. Adaptive neuro-fuzzy methodology for noise assessment of wind turbine.

    PubMed

    Shamshirband, Shahaboddin; Petkovi?, Dalibor; Hashim, Roslan; Motamedi, Shervin

    2014-01-01

    Wind turbine noise is one of the major obstacles for the widespread use of wind energy. Noise tone can greatly increase the annoyance factor and the negative impact on human health. Noise annoyance caused by wind turbines has become an emerging problem in recent years, due to the rapid increase in number of wind turbines, triggered by sustainable energy goals set forward at the national and international level. Up to now, not all aspects of the generation, propagation and perception of wind turbine noise are well understood. For a modern large wind turbine, aerodynamic noise from the blades is generally considered to be the dominant noise source, provided that mechanical noise is adequately eliminated. The sources of aerodynamic noise can be divided into tonal noise, inflow turbulence noise, and airfoil self-noise. Many analytical and experimental acoustical studies performed the wind turbines. Since the wind turbine noise level analyzing by numerical methods or computational fluid dynamics (CFD) could be very challenging and time consuming, soft computing techniques are preferred. To estimate noise level of wind turbine, this paper constructed a process which simulates the wind turbine noise levels in regard to wind speed and sound frequency with adaptive neuro-fuzzy inference system (ANFIS). This intelligent estimator is implemented using Matlab/Simulink and the performances are investigated. The simulation results presented in this paper show the effectiveness of the developed method. PMID:25075621

  8. Data mining in forecasting PVT correlations of crude oil systems based on Type1 fuzzy logic inference systems

    NASA Astrophysics Data System (ADS)

    El-Sebakhy, Emad A.

    2009-09-01

    Pressure-volume-temperature properties are very important in the reservoir engineering computations. There are many empirical approaches for predicting various PVT properties based on empirical correlations and statistical regression models. Last decade, researchers utilized neural networks to develop more accurate PVT correlations. These achievements of neural networks open the door to data mining techniques to play a major role in oil and gas industry. Unfortunately, the developed neural networks correlations are often limited, and global correlations are usually less accurate compared to local correlations. Recently, adaptive neuro-fuzzy inference systems have been proposed as a new intelligence framework for both prediction and classification based on fuzzy clustering optimization criterion and ranking. This paper proposes neuro-fuzzy inference systems for estimating PVT properties of crude oil systems. This new framework is an efficient hybrid intelligence machine learning scheme for modeling the kind of uncertainty associated with vagueness and imprecision. We briefly describe the learning steps and the use of the Takagi Sugeno and Kang model and Gustafson-Kessel clustering algorithm with K-detected clusters from the given database. It has featured in a wide range of medical, power control system, and business journals, often with promising results. A comparative study will be carried out to compare their performance of this new framework with the most popular modeling techniques, such as neural networks, nonlinear regression, and the empirical correlations algorithms. The results show that the performance of neuro-fuzzy systems is accurate, reliable, and outperform most of the existing forecasting techniques. Future work can be achieved by using neuro-fuzzy systems for clustering the 3D seismic data, identification of lithofacies types, and other reservoir characterization.

  9. Vibration suppression control of smart piezoelectric rotating truss structure by parallel neuro-fuzzy control with genetic algorithm tuning

    NASA Astrophysics Data System (ADS)

    Lin, J.; Zheng, Y. B.

    2012-07-01

    The main goal of this paper is to develop a novel approach for vibration control on a piezoelectric rotating truss structure. This study will analyze the dynamics and control of a flexible structure system with multiple degrees of freedom, represented in this research as a clamped-free-free-free truss type plate rotated by motors. The controller has two separate feedback loops for tracking and damping, and the vibration suppression controller is independent of position tracking control. In addition to stabilizing the actual system, the proposed proportional-derivative (PD) control, based on genetic algorithm (GA) to seek the primary optimal control gain, must supplement a fuzzy control law to ensure a stable nonlinear system. This is done by using an intelligent fuzzy controller based on adaptive neuro-fuzzy inference system (ANFIS) with GA tuning to increase the efficiency of fuzzy control. The PD controller, in its assisting role, easily stabilized the linear system. The fuzzy controller rule base was then constructed based on PD performance-related knowledge. Experimental validation for such a structure demonstrates the effectiveness of the proposed controller. The broad range of problems discussed in this research will be found useful in civil, mechanical, and aerospace engineering, for flexible structures with multiple degree-of-freedom motion.

  10. Development of a neuro-fuzzy technique for automated parameter optimization of inverse treatment planning

    PubMed Central

    Stieler, Florian; Yan, Hui; Lohr, Frank; Wenz, Frederik; Yin, Fang-Fang

    2009-01-01

    Background Parameter optimization in the process of inverse treatment planning for intensity modulated radiation therapy (IMRT) is mainly conducted by human planners in order to create a plan with the desired dose distribution. To automate this tedious process, an artificial intelligence (AI) guided system was developed and examined. Methods The AI system can automatically accomplish the optimization process based on prior knowledge operated by several fuzzy inference systems (FIS). Prior knowledge, which was collected from human planners during their routine trial-and-error process of inverse planning, has first to be "translated" to a set of "if-then rules" for driving the FISs. To minimize subjective error which could be costly during this knowledge acquisition process, it is necessary to find a quantitative method to automatically accomplish this task. A well-developed machine learning technique, based on an adaptive neuro fuzzy inference system (ANFIS), was introduced in this study. Based on this approach, prior knowledge of a fuzzy inference system can be quickly collected from observation data (clinically used constraints). The learning capability and the accuracy of such a system were analyzed by generating multiple FIS from data collected from an AI system with known settings and rules. Results Multiple analyses showed good agreements of FIS and ANFIS according to rules (error of the output values of ANFIS based on the training data from FIS of 7.77 ± 0.02%) and membership functions (3.9%), thus suggesting that the "behavior" of an FIS can be propagated to another, based on this process. The initial experimental results on a clinical case showed that ANFIS is an effective way to build FIS from practical data, and analysis of ANFIS and FIS with clinical cases showed good planning results provided by ANFIS. OAR volumes encompassed by characteristic percentages of isodoses were reduced by a mean of between 0 and 28%. Conclusion The study demonstrated a feasible way to automatically perform parameter optimization of inverse treatment planning under guidance of prior knowledge without human intervention other than providing a set of constraints that have proven clinically useful in a given setting. PMID:19781059

  11. A Dynamic Neuro-Fuzzy Model Providing Bio-State Estimation and Prognosis Prediction for Wearable Intelligent Assistants

    PubMed Central

    Wang, Yu; Winters, Jack M

    2005-01-01

    Background Intelligent management of wearable applications in rehabilitation requires an understanding of the current context, which is constantly changing over the rehabilitation process because of changes in the person's status and environment. This paper presents a dynamic recurrent neuro-fuzzy system that implements expert-and evidence-based reasoning. It is intended to provide context-awareness for wearable intelligent agents/assistants (WIAs). Methods The model structure includes the following types of signals: inputs, states, outputs and outcomes. Inputs are facts or events which have effects on patients' physiological and rehabilitative states; different classes of inputs (e.g., facts, context, medication, therapy) have different nonlinear mappings to a fuzzy "effect." States are dimensionless linguistic fuzzy variables that change based on causal rules, as implemented by a fuzzy inference system (FIS). The FIS, with rules based on expertise and evidence, essentially defines the nonlinear state equations that are implemented by nuclei of dynamic neurons. Outputs, a function of weighing of states and effective inputs using conventional or fuzzy mapping, can perform actions, predict performance, or assist with decision-making. Outcomes are scalars to be extremized that are a function of outputs and states. Results The first example demonstrates setup and use for a large-scale stroke neurorehabilitation application (with 16 inputs, 12 states, 5 outputs and 3 outcomes), showing how this modelling tool can successfully capture causal dynamic change in context-relevant states (e.g., impairments, pain) as a function of input event patterns (e.g., medications). The second example demonstrates use of scientific evidence to develop rule-based dynamic models, here for predicting changes in muscle strength with short-term fatigue and long-term strength-training. Conclusion A neuro-fuzzy modelling framework is developed for estimating rehabilitative change that can be applied in any field of rehabilitation if sufficient evidence and/or expert knowledge are available. It is intended to provide context-awareness of changing status through state estimation, which is critical information for WIA's to be effective. PMID:15985181

  12. Machine remaining useful life prediction: An integrated adaptive neuro-fuzzy and high-order particle filtering approach

    NASA Astrophysics Data System (ADS)

    Chen, Chaochao; Vachtsevanos, George; Orchard, Marcos E.

    2012-04-01

    Machine prognosis can be considered as the generation of long-term predictions that describe the evolution in time of a fault indicator, with the purpose of estimating the remaining useful life (RUL) of a failing component/subsystem so that timely maintenance can be performed to avoid catastrophic failures. This paper proposes an integrated RUL prediction method using adaptive neuro-fuzzy inference systems (ANFIS) and high-order particle filtering, which forecasts the time evolution of the fault indicator and estimates the probability density function (pdf) of RUL. The ANFIS is trained and integrated in a high-order particle filter as a model describing the fault progression. The high-order particle filter is used to estimate the current state and carry out p-step-ahead predictions via a set of particles. These predictions are used to estimate the RUL pdf. The performance of the proposed method is evaluated via the real-world data from a seeded fault test for a UH-60 helicopter planetary gear plate. The results demonstrate that it outperforms both the conventional ANFIS predictor and the particle-filter-based predictor where the fault growth model is a first-order model that is trained via the ANFIS.

  13. Introducing an Evolving Local Neuro-Fuzzy Model - Application to modeling of car-following behavior.

    PubMed

    Kazemi, Reza; Abdollahzade, Majid

    2015-11-01

    This paper proposes an Evolving Local Linear Neuro-Fuzzy Model for modeling and identification of nonlinear time-variant systems which change their nature and character over time. The proposed approach evolves through time to follow the structural changes in the time-variant dynamic systems. The evolution process is managed by a distance-based extended hierarchical binary tree algorithm, which decides whether the proposed evolving model should be adapted to the system variations or evolution is necessary. To represent an interesting but challenging example of the systems with changing dynamics, the proposed evolving model is applied to model car-following process in a traffic flow, as an online identification problem. Results of simulations demonstrate effectiveness of the proposed approach in modeling of the time-variant systems. PMID:26410447

  14. Forecasting of the development of professional medical equipment engineering based on neuro-fuzzy algorithms

    NASA Astrophysics Data System (ADS)

    Vaganova, E. V.; Syryamkin, M. V.

    2015-11-01

    The purpose of the research is the development of evolutionary algorithms for assessments of promising scientific directions. The main attention of the present study is paid to the evaluation of the foresight possibilities for identification of technological peaks and emerging technologies in professional medical equipment engineering in Russia and worldwide on the basis of intellectual property items and neural network modeling. An automated information system consisting of modules implementing various classification methods for accuracy of the forecast improvement and the algorithm of construction of neuro-fuzzy decision tree have been developed. According to the study result, modern trends in this field will focus on personalized smart devices, telemedicine, bio monitoring, «e-Health» and «m-Health» technologies.

  15. A neuro-fuzzy scheme for simultaneous feature selection and fuzzy rule-based classification.

    PubMed

    Chakraborty, Debrup; Pal, Nikhil R

    2004-01-01

    Most methods of classification either ignore feature analysis or do it in a separate phase, offline prior to the main classification task. This paper proposes a neuro-fuzzy scheme for designing a classifier along with feature selection. It is a four-layered feed-forward network for realizing a fuzzy rule-based classifier. The network is trained by error backpropagation in three phases. In the first phase, the network learns the important features and the classification rules. In the subsequent phases, the network is pruned to an "optimal" architecture that represents an "optimal" set of rules. Pruning is found to drastically reduce the size of the network without degrading the performance. The pruned network is further tuned to improve performance. The rules learned by the network can be easily read from the network. The system is tested on both synthetic and real data sets and found to perform quite well. PMID:15387252

  16. Landslide susceptibility assessment by using a neuro-fuzzy model: a case study in the Rupestrian heritage rich area of Matera

    NASA Astrophysics Data System (ADS)

    Sdao, F.; Lioi, D. S.; Pascale, S.; Caniani, D.; Mancini, I. M.

    2013-02-01

    The complete assessment of landslide susceptibility needs uniformly distributed detailed information on the territory. This information, which is related to the temporal occurrence of landslide phenomena and their causes, is often fragmented and heterogeneous. The present study evaluates the landslide susceptibility map of the Natural Archaeological Park of Matera (Southern Italy) (Sassi and area Rupestrian Churches sites). The assessment of the degree of "spatial hazard" or "susceptibility" was carried out by the spatial prediction regardless of the return time of the events. The evaluation model for the susceptibility presented in this paper is very focused on the use of innovative techniques of artificial intelligence such as Neural Network, Fuzzy Logic and Neuro-fuzzy Network. The method described in this paper is a novel technique based on a neuro-fuzzy system. It is able to train data like neural network and it is able to shape and control uncertain and complex systems like a fuzzy system. This methodology allows us to derive susceptibility maps of the study area. These data are obtained from thematic maps representing the parameters responsible for the instability of the slopes. The parameters used in the analysis are: plan curvature, elevation (DEM), angle and aspect of the slope, lithology, fracture density, kinematic hazard index of planar and wedge sliding and toppling. Moreover, this method is characterized by the network training which uses a training matrix, consisting of input and output training data, which determine the landslide susceptibility. The neuro-fuzzy method was integrated to a sensitivity analysis in order to overcome the uncertainty linked to the used membership functions. The method was compared to the landslide inventory map and was validated by applying three methods: a ROC (Receiver Operating Characteristic) analysis, a confusion matrix and a SCAI method. The developed neuro-fuzzy method showed a good performance in the determination of the landslide susceptibility map.

  17. A neuro-fuzzy approach in the classification of students' academic performance.

    PubMed

    Do, Quang Hung; Chen, Jeng-Fung

    2013-01-01

    Classifying the student academic performance with high accuracy facilitates admission decisions and enhances educational services at educational institutions. The purpose of this paper is to present a neuro-fuzzy approach for classifying students into different groups. The neuro-fuzzy classifier used previous exam results and other related factors as input variables and labeled students based on their expected academic performance. The results showed that the proposed approach achieved a high accuracy. The results were also compared with those obtained from other well-known classification approaches, including support vector machine, Naive Bayes, neural network, and decision tree approaches. The comparative analysis indicated that the neuro-fuzzy approach performed better than the others. It is expected that this work may be used to support student admission procedures and to strengthen the services of educational institutions. PMID:24302928

  18. Adaptive Neuro-Fuzzy Modeling of UH-60A Pilot Vibration

    NASA Technical Reports Server (NTRS)

    Kottapalli, Sesi; Malki, Heidar A.; Langari, Reza

    2003-01-01

    Adaptive neuro-fuzzy relationships have been developed to model the UH-60A Black Hawk pilot floor vertical vibration. A 200 point database that approximates the entire UH-60A helicopter flight envelope is used for training and testing purposes. The NASA/Army Airloads Program flight test database was the source of the 200 point database. The present study is conducted in two parts. The first part involves level flight conditions and the second part involves the entire (200 point) database including maneuver conditions. The results show that a neuro-fuzzy model can successfully predict the pilot vibration. Also, it is found that the training phase of this neuro-fuzzy model takes only two or three iterations to converge for most cases. Thus, the proposed approach produces a potentially viable model for real-time implementation.

  19. Evolutionary Local Search of Fuzzy Rules through a novel Neuro-Fuzzy encoding method.

    PubMed

    Carrascal, A; Manrique, D; Ríos, J; Rossi, C

    2003-01-01

    This paper proposes a new approach for constructing fuzzy knowledge bases using evolutionary methods. We have designed a genetic algorithm that automatically builds neuro-fuzzy architectures based on a new indirect encoding method. The neuro-fuzzy architecture represents the fuzzy knowledge base that solves a given problem; the search for this architecture takes advantage of a local search procedure that improves the chromosomes at each generation. Experiments conducted both on artificially generated and real world problems confirm the effectiveness of the proposed approach. PMID:14629866

  20. Appraisal of adaptive neuro-fuzzy computing technique for estimating anti-obesity properties of a medicinal plant.

    PubMed

    Kazemipoor, Mahnaz; Hajifaraji, Majid; Radzi, Che Wan Jasimah Bt Wan Mohamed; Shamshirband, Shahaboddin; Petkovi?, Dalibor; Mat Kiah, Miss Laiha

    2015-01-01

    This research examines the precision of an adaptive neuro-fuzzy computing technique in estimating the anti-obesity property of a potent medicinal plant in a clinical dietary intervention. Even though a number of mathematical functions such as SPSS analysis have been proposed for modeling the anti-obesity properties estimation in terms of reduction in body mass index (BMI), body fat percentage, and body weight loss, there are still disadvantages of the models like very demanding in terms of calculation time. Since it is a very crucial problem, in this paper a process was constructed which simulates the anti-obesity activities of caraway (Carum carvi) a traditional medicine on obese women with adaptive neuro-fuzzy inference (ANFIS) method. The ANFIS results are compared with the support vector regression (SVR) results using root-mean-square error (RMSE) and coefficient of determination (R(2)). The experimental results show that an improvement in predictive accuracy and capability of generalization can be achieved by the ANFIS approach. The following statistical characteristics are obtained for BMI loss estimation: RMSE=0.032118 and R(2)=0.9964 in ANFIS testing and RMSE=0.47287 and R(2)=0.361 in SVR testing. For fat loss estimation: RMSE=0.23787 and R(2)=0.8599 in ANFIS testing and RMSE=0.32822 and R(2)=0.7814 in SVR testing. For weight loss estimation: RMSE=0.00000035601 and R(2)=1 in ANFIS testing and RMSE=0.17192 and R(2)=0.6607 in SVR testing. Because of that, it can be applied for practical purposes. PMID:25453384

  1. Trends and Issues in Fuzzy Control and Neuro-Fuzzy Modeling

    NASA Technical Reports Server (NTRS)

    Chiu, Stephen

    1996-01-01

    Everyday experience in building and repairing things around the home have taught us the importance of using the right tool for the right job. Although we tend to think of a 'job' in broad terms, such as 'build a bookcase,' we understand well that the 'right job' associated with each 'right tool' is typically a narrowly bounded subtask, such as 'tighten the screws.' Unfortunately, we often lose sight of this principle when solving engineering problems; we treat a broadly defined problem, such as controlling or modeling a system, as a narrow one that has a single 'right tool' (e.g., linear analysis, fuzzy logic, neural network). We need to recognize that a typical real-world problem contains a number of different sub-problems, and that a truly optimal solution (the best combination of cost, performance and feature) is obtained by applying the right tool to the right sub-problem. Here I share some of my perspectives on what constitutes the 'right job' for fuzzy control and describe recent advances in neuro-fuzzy modeling to illustrate and to motivate the synergistic use of different tools.

  2. Neuro-fuzzy models as an IVIVR tool and their applicability in generic drug development.

    PubMed

    Opara, Jerneja; Legen, Igor

    2014-03-01

    The usefulness of neuro-fuzzy (NF) models as an alternative in vitro-in vivo relationship (IVIVR) tool and as a support to quality by design (QbD) in generic drug development is presented. For drugs with complicated pharmacokinetics, immediate release drugs or nasal sprays, suggested level A correlations are not capable to satisfactorily describe the IVIVR. NF systems were recognized as a reasonable method in comparison to the published approaches for development of IVIVR. Consequently, NF models were built to predict 144 pharmacokinetic (PK) parameter ratios required for demonstration of bioequivalence (BE) for 88 pivotal BE studies. Input parameters of models included dissolution data and their combinations in different media, presence of food, formulation strength, technology type, particle size, and spray pattern for nasal sprays. Ratios of PK parameters Cmax or AUC were used as output variables. The prediction performance of models resulted in the following values: 79% of models have acceptable external prediction error (PE) below 10%, 13% of models have inconclusive PE between 10 and 20%, and remaining 8% of models show inadequate PE above 20%. Average internal predictability (LE) is 0.3%, and average external predictability of all models results in 7.7%. In average, models have acceptable internal and external predictabilities with PE lower than 10% and are therefore useful for IVIVR needs during formulation development, as a support to QbD and for the prediction of BE study outcome. PMID:24477942

  3. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.

    PubMed

    Barenboim, Maxim; Masso, Majid; Vaisman, Iosif I; Jamison, D Curtis

    2008-06-01

    There is substantial interest in methods designed to predict the effect of nonsynonymous single nucleotide polymorphisms (nsSNPs) on protein function, given their potential relationship to heritable diseases. Current state-of-the-art supervised machine learning algorithms, such as random forest (RF), train models that classify single amino acid mutations in proteins as either neutral or deleterious to function. However, it is frequently the case that the functional effect of a polymorphism on a protein resides between these two extremes. The utilization of classifiers that incorporate fuzzy logic provides a natural extension in order to account for the spectrum of possible functional consequences. We generated a dataset of single amino acid substitutions in human proteins having known three-dimensional structures. Each variant was uniquely represented as a feature vector that included computational geometry and knowledge-based statistical potential predictors obtained though application of Delaunay tessellation of protein structures. Additional attributes consisted of physicochemical properties of the native and replacement amino acids as well as topological location of the mutated residue position in the solved structure. Classification performance of the RF algorithm was evaluated on a training set consisting of the disease-associated and neutral nsSNPs taken from our dataset, and attributes were ranked according to their relative importance. Similarly, we evaluated the performance of adaptive neuro-fuzzy inference system (ANFIS). The utility of statistical geometry predictors was compared with that of traditional structural and evolutionary attributes employed by other researchers, revealing an equally effective yet complementary methodology. Among all attributes in our feature set, the statistical geometry predictors were found to be the most highly ranked. On the basis of the AUC (area under the ROC curve) measure of performance, the ANFIS and RF models were equally effective when only statistical geometry features were utilized. Tenfold cross-validation studies evaluating AUC, balanced error rate (BER), and Matthew's correlation coefficient (MCC) showed that our RF model was at least comparable with the well-established methods of SIFT and PolyPhen. The trained RF and ANFIS models were each subsequently used to predict the disease potential of human nsSNPs in our dataset that are currently unclassified (http://rna.gmu.edu/FuzzySnps/). PMID:18186470

  4. Combining classifiers of pesticides toxicity through a neuro-fuzzy approach

    E-print Network

    Gini, Giuseppina

    Combining classifiers of pesticides toxicity through a neuro-fuzzy approach Emilio Benfenati1 an improvement in combining the results of five classifiers applied in toxicity of pesticides. Nevertheless in toxicity of pesticides characterization, and knowledge discovery. 1 Introduction Quantitative structure

  5. Global cross-station assessment of neuro-fuzzy models for estimating daily reference evapotranspiration

    NASA Astrophysics Data System (ADS)

    Shiri, Jalal; Nazemi, Amir Hossein; Sadraddini, Ali Ashraf; Landeras, Gorka; Kisi, Ozgur; Fard, Ahmad Fakheri; Marti, Pau

    2013-02-01

    SummaryAccurate estimation of reference evapotranspiration is important for irrigation scheduling, water resources management and planning and other agricultural water management issues. In the present paper, the capabilities of generalized neuro-fuzzy models were evaluated for estimating reference evapotranspiration using two separate sets of weather data from humid and non-humid regions of Spain and Iran. In this way, the data from some weather stations in the Basque Country and Valencia region (Spain) were used for training the neuro-fuzzy models [in humid and non-humid regions, respectively] and subsequently, the data from these regions were pooled to evaluate the generalization capability of a general neuro-fuzzy model in humid and non-humid regions. The developed models were tested in stations of Iran, located in humid and non-humid regions. The obtained results showed the capabilities of generalized neuro-fuzzy model in estimating reference evapotranspiration in different climatic zones. Global GNF models calibrated using both non-humid and humid data were found to successfully estimate ET0 in both non-humid and humid regions of Iran (the lowest MAE values are about 0.23 mm for non-humid Iranian regions and 0.12 mm for humid regions). non-humid GNF models calibrated using non-humid data performed much better than the humid GNF models calibrated using humid data in non-humid region while the humid GNF model gave better estimates in humid region.

  6. Neuro-fuzzy control of a multi-degree of freedom structure with semi-active magnetorheological dampers 

    E-print Network

    Likhitruangsilp, Visit

    2002-01-01

    This research illustrates semi-active structural control of a three-story nonlinear building using magnetorheological dampers and a neuro-fuzzy algorithm. The structure being studied was developed for a third generation benchmark problem...

  7. Segmentation of radiographic cervical images with neuro-fuzzy classification of multiresolution wavelets

    NASA Astrophysics Data System (ADS)

    Pemmaraju, Suryalakshmi; Mitra, Sunanda; Shieh, Yao-Yang; Roberson, Glenn H.

    1995-05-01

    Segmentation of medical images poses a critical problem in image analysis. Segmenting a scene into different regions in the absence of sufficient apriori information is a challenging problem. A multiresolution image representation approach is presented here which makes use of a fuzzy neural network to segment a reconstructed image from wavelet decomposition into regions of interest. The multiresolution wavelets provide a basis for analyzing the information content of the image with global as well as local perspectives. The higher resolution levels contain information pertaining to the finer details while the lower resolutions capture the global features. A neuro-fuzzy algorithm facilitates the segmentation of the wavelet reconstructed image into different regions based on image intensity. The proposed algorithm has been applied to images of different kinds and has yielded promising results. The concept of using multiresolution wavelets and a neuro-fuzzy classification scheme has the added advantage of flexibility in the level of segmentation achieved.

  8. Fuzzy Hough Transform and an MLP with Fuzzy Input/Output for Character Recognition A neuro-fuzzy system for character recognition using a fuzzy Hough transform technique is

    E-print Network

    Sural, Shamik

    -fuzzy system for character recognition using a fuzzy Hough transform technique is presented in this paper #12;1 1. INTRODUCTION Recognition of characters from scanned documents is a key step in document image processing. Many methods have been suggested for solving the problem of optical character recognition (OCR

  9. Application of neuro-fuzzy methods to gamma spectroscopy

    NASA Astrophysics Data System (ADS)

    Grelle, Austin L.

    Nuclear non-proliferation activities are an essential part of national security activities both domestic and abroad. The safety of the public in densely populated environments such as urban areas or large events can be compromised if devices using special nuclear materials are present. Therefore, the prompt and accurate detection of these materials is an important topic of research, in which the identification of normal conditions is also of importance. With gamma-ray spectroscopy, these conditions are identified as the radiation background, which though being affected by a multitude of factors is ever present. Therefore, in nuclear non-proliferation activities the accurate identification of background is important. With this in mind, a method has been developed to utilize aggregate background data to predict the background of a location through the use of an Artificial Neural Network (ANN). After being trained on background data, the ANN is presented with nearby relevant gamma-ray spectroscopy data---as identified by a Fuzzy Inference System - to create a predicted background spectra to compare to a measured spectra. If a significant deviation exists between the predicted and measured data, the method alerts the user such that a more thorough investigation can take place. Research herein focused on data from an urban setting in which the number of false positives was observed to be 28 out of a total of 987, representing 2.94% error. The method therefore currently shows a high rate of false positives given the current configuration, however there are promising steps that can be taken to further minimize this error. With this in mind, the method stands as a potentially significant tool in urban nuclear nonproliferation activities.

  10. Reactive navigation for autonomous guided vehicle using neuro-fuzzy techniques

    NASA Astrophysics Data System (ADS)

    Cao, Jin; Liao, Xiaoqun; Hall, Ernest L.

    1999-08-01

    A Neuro-fuzzy control method for navigation of an Autonomous Guided Vehicle robot is described. Robot navigation is defined as the guiding of a mobile robot to a desired destination or along a desired path in an environment characterized by as terrain and a set of distinct objects, such as obstacles and landmarks. The autonomous navigate ability and road following precision are mainly influenced by its control strategy and real-time control performance. Neural network and fuzzy logic control techniques can improve real-time control performance for mobile robot due to its high robustness and error-tolerance ability. For a mobile robot to navigate automatically and rapidly, an important factor is to identify and classify mobile robots' currently perceptual environment. In this paper, a new approach of the current perceptual environment feature identification and classification, which are based on the analysis of the classifying neural network and the Neuro- fuzzy algorithm, is presented. The significance of this work lies in the development of a new method for mobile robot navigation.

  11. Experimental Validation of a Neuro-Fuzzy Approach to Phasing the SIBOA Segmented Mirror Testbed

    NASA Astrophysics Data System (ADS)

    Olivier, Philip D.

    2002-07-01

    NASA is preparing to launch the Next Generation Space Telescope (NGST). This telescope will be larger than the Hubble Space Telescope, be launched on an Atlas missile rather than the Space Shuttle, have a segmented primary mirror, and be placed in a higher orbit. All these differences pose significant challenges. This effort addresses the challenge of aligning the segments of the primary mirror during the initial deployment. The segments need to piston values aligned to within one tenth of a wavelength. The present study considers using a neuro-fuzzy model of the Fraunhofer diffraction theory. The intention of the current study was to experimentally verify the algorithm derived earlier. The experimental study was to be performed on the SIBOA (Systematic Image Based Optical Alignment) test bed. Unfortunately the hardware/software for SIBOA was not ready by the end of the study period. We did succeed in capturing several images of two stacked segments with various relative phases. These images can be used to calibrate the algorithm for future implementation. This effort is a continuation of prior work. The basic effort involves developing a closed loop control algorithm to phase a segmented mirror test bed (SIBOA). The control algorithm is based on a neuro-fuzzy model of SIBOA and incorporates nonlinear observers built from observer banks. This effort involves implementing the algorithm on the SIBOA test bed.

  12. Experimental Validation of a Neuro-Fuzzy Approach to Phasing the SIBOA Segmented Mirror Testbed

    NASA Technical Reports Server (NTRS)

    Olivier, Philip D.

    2002-01-01

    NASA is preparing to launch the Next Generation Space Telescope (NGST). This telescope will be larger than the Hubble Space Telescope, be launched on an Atlas missile rather than the Space Shuttle, have a segmented primary mirror, and be placed in a higher orbit. All these differences pose significant challenges. This effort addresses the challenge of aligning the segments of the primary mirror during the initial deployment. The segments need to piston values aligned to within one tenth of a wavelength. The present study considers using a neuro-fuzzy model of the Fraunhofer diffraction theory. The intention of the current study was to experimentally verify the algorithm derived earlier. The experimental study was to be performed on the SIBOA (Systematic Image Based Optical Alignment) test bed. Unfortunately the hardware/software for SIBOA was not ready by the end of the study period. We did succeed in capturing several images of two stacked segments with various relative phases. These images can be used to calibrate the algorithm for future implementation. This effort is a continuation of prior work. The basic effort involves developing a closed loop control algorithm to phase a segmented mirror test bed (SIBOA). The control algorithm is based on a neuro-fuzzy model of SIBOA and incorporates nonlinear observers built from observer banks. This effort involves implementing the algorithm on the SIBOA test bed.

  13. Assessment of arsenic concentration in stream water using neuro fuzzy networks with factor analysis.

    PubMed

    Chang, Fi-John; Chung, Chang-Han; Chen, Pin-An; Liu, Chen-Wuing; Coynel, Alexandra; Vachaud, Georges

    2014-10-01

    We propose a systematical approach to assessing arsenic concentration in a river through: important factor extraction by a nonlinear factor analysis; arsenic concentration estimation by the neuro-fuzzy network; and impact assessment of important factors on arsenic concentration by the membership degrees of the constructed neuro-fuzzy network. The arsenic-contaminated Huang Gang Creek in northern Taiwan is used as a study case. Results indicate that rainfall, nitrite nitrogen and temperature are important factors and the proposed estimation model (ANFIS(GT)) is superior to the two comparative models, in which 50% and 52% improvements in RMSE are made over ANFIS(CC) and ANFIS(all), respectively. Results reveal that arsenic concentration reaches the highest in an environment of lower temperature, higher nitrite nitrogen concentration and larger one-month antecedent rainfall; while it reaches the lowest in an environment of higher temperature, lower nitrite nitrogen concentration and smaller one-month antecedent rainfall. It is noted that these three selected factors are easy-to-collect. We demonstrate that the proposed methodology is a useful and effective methodology, which can be adapted to other similar settings to reliably model water quality based on parameters of interest and/or study areas of interest for universal usage. The proposed methodology gives a quick and reliable way to estimate arsenic concentration, which makes good contribution to water environment management. PMID:25046611

  14. Verifying Stability of Dynamic Soft-Computing Systems

    NASA Technical Reports Server (NTRS)

    Wen, Wu; Napolitano, Marcello; Callahan, John

    1997-01-01

    Soft computing is a general term for algorithms that learn from human knowledge and mimic human skills. Example of such algorithms are fuzzy inference systems and neural networks. Many applications, especially in control engineering, have demonstrated their appropriateness in building intelligent systems that are flexible and robust. Although recent research have shown that certain class of neuro-fuzzy controllers can be proven bounded and stable, they are implementation dependent and difficult to apply to the design and validation process. Many practitioners adopt the trial and error approach for system validation or resort to exhaustive testing using prototypes. In this paper, we describe our on-going research towards establishing necessary theoretic foundation as well as building practical tools for the verification and validation of soft-computing systems. A unified model for general neuro-fuzzy system is adopted. Classic non-linear system control theory and recent results of its applications to neuro-fuzzy systems are incorporated and applied to the unified model. It is hoped that general tools can be developed to help the designer to visualize and manipulate the regions of stability and boundedness, much the same way Bode plots and Root locus plots have helped conventional control design and validation.

  15. A hybrid clustering based fuzzy structure for vibration control - Part 2: An application to semi-active vehicle seat-suspension system

    NASA Astrophysics Data System (ADS)

    Nguyen, Sy Dzung; Nguyen, Quoc Hung; Choi, Seung-Bok

    2015-05-01

    This work presents a novel neuro-fuzzy controller (NFC) for car-driver's seat-suspension system featuring magnetorheological (MR) dampers. The NFC is built based on the algorithm for building adaptive neuro-fuzzy inference systems (ANFISs) named B-ANFIS, which has been developed in Part 1, and fuzzy logic inference systems (FISs). In order to create the NFC, the following steps are performed. Firstly, a control strategy based on a ride-comfort-oriented tendency (RCOT) is established. Subsequently, optimal FISs are built based on a genetic algorithm (GA) to estimate the desired damping force that satisfies the RCOT corresponding to the road status at each time. The B-ANFIS is then used to build ANFISs for inverse dynamic models of the suspension system (I-ANFIS). Based on the FISs, the desired force values are calculated according to the status of road at each time. The corresponding exciting current value to be applied to the MR damper is then determined by the I-ANFIS. In order to validate the effectiveness of the developed neuro-fuzzy controller, control performances of the seat-suspension systems featuring MR dampers are evaluated under different road conditions. In addition, a comparative work between conventional skyhook controller and the proposed NFC is undertaken in order to demonstrate superior control performances of the proposed methodology.

  16. Characterizing root distribution with adaptive neuro-fuzzy analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Root-soil relationships are pivotal to understanding crop growth and function in a changing environment. Plant root systems are difficult to measure and remain understudied relative to above ground responses. High variation among field samples often leads to non-significance when standard statistics...

  17. Physical activities recognition from ambulatory ECG signals using neuro-fuzzy classifiers and support vector machines.

    PubMed

    Kher, Rahul; Pawar, Tanmay; Thakar, Vishvjit; Shah, Hitesh

    2015-02-01

    The use of wearable recorders for long-term monitoring of physiological parameters has increased in the last few years. The ambulatory electrocardiogram (A-ECG) signals of five healthy subjects with four body movements or physical activities (PA)-left arm up down, right arm up down, waist twisting and walking-have been recorded using a wearable ECG recorder. The classification of these four PAs has been performed using neuro-fuzzy classifier (NFC) and support vector machines (SVM). The PA classification is based on the distinct, time-frequency features of the extracted motion artifacts contained in recorded A-ECG signals. The motion artifacts in A-ECG signals have been separated first by the discrete wavelet transform (DWT) and the time-frequency features of these motion artifacts have then been extracted using the Gabor transform. The Gabor energy feature vectors have been fed to the NFC and SVM classifiers. Both the classifiers have achieved a PA classification accuracy of over 95% for all subjects. PMID:25641014

  18. Brain tumour classification and abnormality detection using neuro-fuzzy technique and Otsu thresholding.

    PubMed

    Renjith, Arokia; Manjula, P; Mohan Kumar, P

    2015-11-01

    Brain tumour is one of the main causes for an increase in transience among children and adults. This paper proposes an improved method based on Magnetic Resonance Imaging (MRI) brain image classification and image segmentation approach. Automated classification is encouraged by the need of high accuracy when dealing with a human life. The detection of the brain tumour is a challenging problem, due to high diversity in tumour appearance and ambiguous tumour boundaries. MRI images are chosen for detection of brain tumours, as they are used in soft tissue determinations. First of all, image pre-processing is used to enhance the image quality. Second, dual-tree complex wavelet transform multi-scale decomposition is used to analyse texture of an image. Feature extraction extracts features from an image using gray-level co-occurrence matrix (GLCM). Then, the Neuro-Fuzzy technique is used to classify the stages of brain tumour as benign, malignant or normal based on texture features. Finally, tumour location is detected using Otsu thresholding. The classifier performance is evaluated based on classification accuracies. The simulated results show that the proposed classifier provides better accuracy than previous method. PMID:26493726

  19. Neuro-fuzzy decoding of sensory information from ensembles of simultaneously recorded dorsal root ganglion neurons for functional electrical stimulation applications.

    PubMed

    Rigosa, J; Weber, D J; Prochazka, A; Stein, R B; Micera, S

    2011-08-01

    Functional electrical stimulation (FES) is used to improve motor function after injury to the central nervous system. Some FES systems use artificial sensors to switch between finite control states. To optimize FES control of the complex behavior of the musculo-skeletal system in activities of daily life, it is highly desirable to implement feedback control. In theory, sensory neural signals could provide the required control signals. Recent studies have demonstrated the feasibility of deriving limb-state estimates from the firing rates of primary afferent neurons recorded in dorsal root ganglia (DRG). These studies used multiple linear regression (MLR) methods to generate estimates of limb position and velocity based on a weighted sum of firing rates in an ensemble of simultaneously recorded DRG neurons. The aim of this study was to test whether the use of a neuro-fuzzy (NF) algorithm (the generalized dynamic fuzzy neural networks (GD-FNN)) could improve the performance, robustness and ability to generalize from training to test sets compared to the MLR technique. NF and MLR decoding methods were applied to ensemble DRG recordings obtained during passive and active limb movements in anesthetized and freely moving cats. The GD-FNN model provided more accurate estimates of limb state and generalized better to novel movement patterns. Future efforts will focus on implementing these neural recording and decoding methods in real time to provide closed-loop control of FES using the information extracted from sensory neurons. PMID:21701057

  20. Developing a local least-squares support vector machines-based neuro-fuzzy model for nonlinear and chaotic time series prediction.

    PubMed

    Miranian, A; Abdollahzade, M

    2013-02-01

    Local modeling approaches, owing to their ability to model different operating regimes of nonlinear systems and processes by independent local models, seem appealing for modeling, identification, and prediction applications. In this paper, we propose a local neuro-fuzzy (LNF) approach based on the least-squares support vector machines (LSSVMs). The proposed LNF approach employs LSSVMs, which are powerful in modeling and predicting time series, as local models and uses hierarchical binary tree (HBT) learning algorithm for fast and efficient estimation of its parameters. The HBT algorithm heuristically partitions the input space into smaller subdomains by axis-orthogonal splits. In each partitioning, the validity functions automatically form a unity partition and therefore normalization side effects, e.g., reactivation, are prevented. Integration of LSSVMs into the LNF network as local models, along with the HBT learning algorithm, yield a high-performance approach for modeling and prediction of complex nonlinear time series. The proposed approach is applied to modeling and predictions of different nonlinear and chaotic real-world and hand-designed systems and time series. Analysis of the prediction results and comparisons with recent and old studies demonstrate the promising performance of the proposed LNF approach with the HBT learning algorithm for modeling and prediction of nonlinear and chaotic systems and time series. PMID:24808276

  1. Neuro-fuzzy control of an MDOF building with a magnetorheological damper using acceleration feedback 

    E-print Network

    Schurter, Kyle Christopher

    2000-01-01

    Parameter specification of a fuzzy inference system (HS) with the aid of artificial neural networks allows the creation of complex, multi-dimensional models that are computationally efficient and numerically robust. An ...

  2. Classification of Atrial Fibrillation prone Patients using Electrocardiographic Parameters in Neuro-Fuzzy Modeling

    E-print Network

    Simon, Dan

    postoperative AF often lead to longer hospital stays and higher heath care costs. The literature showed that AF was selected before the end of the registration and outcome was zero. A total of 2654 data pairs were used in the training step. The training model was based on a Sugeno inference system with five layers [3]. Membership

  3. An Ultrasonic Multi-Beam Concentration Meter with a Neuro-Fuzzy Algorithm for Water Treatment Plants.

    PubMed

    Lee, Ho-Hyun; Jang, Sang-Bok; Shin, Gang-Wook; Hong, Sung-Taek; Lee, Dae-Jong; Chun, Myung Geun

    2015-01-01

    Ultrasonic concentration meters have widely been used at water purification, sewage treatment and waste water treatment plants to sort and transfer high concentration sludges and to control the amount of chemical dosage. When an unusual substance is contained in the sludge, however, the attenuation of ultrasonic waves could be increased or not be transmitted to the receiver. In this case, the value measured by a concentration meter is higher than the actual density value or vibration. As well, it is difficult to automate the residuals treatment process according to the various problems such as sludge attachment or sensor failure. An ultrasonic multi-beam concentration sensor was considered to solve these problems, but an abnormal concentration value of a specific ultrasonic beam degrades the accuracy of the entire measurement in case of using a conventional arithmetic mean for all measurement values, so this paper proposes a method to improve the accuracy of the sludge concentration determination by choosing reliable sensor values and applying a neuro-fuzzy learning algorithm. The newly developed meter is proven to render useful results from a variety of experiments on a real water treatment plant. PMID:26512666

  4. An Ultrasonic Multi-Beam Concentration Meter with a Neuro-Fuzzy Algorithm for Water Treatment Plants

    PubMed Central

    Lee, Ho-Hyun; Jang, Sang-Bok; Shin, Gang-Wook; Hong, Sung-Taek; Lee, Dae-Jong; Chun, Myung Geun

    2015-01-01

    Ultrasonic concentration meters have widely been used at water purification, sewage treatment and waste water treatment plants to sort and transfer high concentration sludges and to control the amount of chemical dosage. When an unusual substance is contained in the sludge, however, the attenuation of ultrasonic waves could be increased or not be transmitted to the receiver. In this case, the value measured by a concentration meter is higher than the actual density value or vibration. As well, it is difficult to automate the residuals treatment process according to the various problems such as sludge attachment or sensor failure. An ultrasonic multi-beam concentration sensor was considered to solve these problems, but an abnormal concentration value of a specific ultrasonic beam degrades the accuracy of the entire measurement in case of using a conventional arithmetic mean for all measurement values, so this paper proposes a method to improve the accuracy of the sludge concentration determination by choosing reliable sensor values and applying a neuro-fuzzy learning algorithm. The newly developed meter is proven to render useful results from a variety of experiments on a real water treatment plant. PMID:26512666

  5. A Stable Neuro-Fuzzy Controller for Output Tracking in Composite Nonlinear Systems

    E-print Network

    Chen, Sheng-Wei

    -001-003. Parts of this work have been presented in 1996 IEEE Interna- tional Conference on Robotics is proposed for on-line implementing a decoupling control action for uncertain composite a ne nonlinear plants of SISO plant, an inverted pendulum, and MIMO plant, a two-link planar robot manipulator, are given

  6. A neuro-fuzzy system for tool condition monitoring in metal cutting 

    E-print Network

    Mesina, Omez Samoon

    1993-01-01

    mechanism are used to provide a linguistic model for the detection of tool wear. However the fuzzy membership functions need to be tuned so that they reflect the true meaning of the process variables. This is done by using an error-based, density...

  7. Biogeography-Based Optimization of Neuro-Fuzzy System Parameters for Diagnosis of Cardiac Disease

    E-print Network

    Simon, Dan

    investigation, which is a sonogram of the heart. But an electro- cardiographic (ECG) investigation is always part of a cardiologic work-up. The ECG represents the deflection of ionic current across myocardial

  8. Development of Hybrid Intelligent Systems and their Applications from Engineering Systems to Complex Systems

    E-print Network

    Owladeghaffari, Hamed

    2008-01-01

    In this study, we introduce general frame of MAny Connected Intelligent Particles Systems (MACIPS). Connections and interconnections between particles get a complex behavior of such merely simple system (system in system).Contribution of natural computing, under information granulation theory, are the main topic of this spacious skeleton. Upon this clue, we organize different algorithms involved a few prominent intelligent computing and approximate reasoning methods such as self organizing feature map (SOM)[9], Neuro- Fuzzy Inference System[10], Rough Set Theory (RST)[11], collaborative clustering, Genetic Algorithm and Ant Colony System. Upon this, we have employed our algorithms on the several engineering systems, especially emerged systems in Civil and Mineral processing. In other process, we investigated how our algorithms can be taken as a linkage of government-society interaction, where government catches various fashions of behavior: solid (absolute) or flexible. So, transition of such society, by chan...

  9. Neuro-fuzzy model of superelastic shape memory alloys with application to seismic engineering 

    E-print Network

    Ozbulut, Osman Eser

    2009-05-15

    Shape memory alloys (SMAs) have recently attracted much attention as a smart material that can be used in passive protection systems such as energy dissipating devices and base isolation systems. For the purpose of ...

  10. Inference Concerning Physical Systems

    NASA Astrophysics Data System (ADS)

    Wolpert, David H.

    The question of whether the universe "is" just an information- processing system has been extensively studied in physics. To address this issue, the canonical forms of information processing in physical systems - observation, prediction, control and memory - were analyzed in [24]. Those forms of information processing are all inherently epistemological; they transfer information concerning the universe as a whole into a scientist's mind. Accordingly, [24] formalized the logical relationship that must hold between the state of a scientist's mind and the state of the universe containing the scientist whenever one of those processes is successful. This formalization has close analogs in the analysis of Turing machines. In particular, it can be used to define an "informational analog" of algorithmic information complexity. In addition, this formalization allows us to establish existence and impossibility results concerning observation, prediction, control and memory. The impossibility results establish that Laplace was wrong to claim that even in a classical, non-chaotic universe the future can be unerringly predicted, given sufficient knowledge of the present. Alternatively, the impossibility results can be viewed as a non-quantum mechanical "uncertainty principle". Here I present a novel motivation of the formalization introduced in [24] and extend some of the associated impossibility results.

  11. Prediction of low back pain with two expert systems.

    PubMed

    Sari, Murat; Gulbandilar, Eyyup; Cimbiz, Ali

    2012-06-01

    Low back pain (LBP) is one of the common problems encountered in medical applications. This paper proposes two expert systems (artificial neural network and adaptive neuro-fuzzy inference system) for the assessment of the LBP level objectively. The skin resistance and visual analog scale (VAS) values have been accepted as the input variables for the developed systems. The results showed that the expert systems behave very similar to real data and that use of the expert systems can be used to successfully diagnose the back pain intensity. The suggested systems were found to be advantageous approaches in addition to existing unbiased approaches. So far as the authors are aware, this is the first attempt of using the two expert systems achieving very good performance in a real application. In light of some of the limitations of this study, we also identify and discuss several areas that need continued investigation. PMID:20978929

  12. Flood Forecasting in River System Using ANFIS

    NASA Astrophysics Data System (ADS)

    Ullah, Nazrin; Choudhury, P.

    2010-10-01

    The aim of the present study is to investigate applicability of artificial intelligence techniques such as ANFIS (Adaptive Neuro-Fuzzy Inference System) in forecasting flood flow in a river system. The proposed technique combines the learning ability of neural network with the transparent linguistic representation of fuzzy system. The technique is applied to forecast discharge at a downstream station using flow information at various upstream stations. A total of three years data has been selected for the implementation of this model. ANFIS models with various input structures and membership functions are constructed, trained and tested to evaluate efficiency of the models. Statistical indices such as Root Mean Square Error (RMSE), Correlation Coefficient (CORR) and Coefficient of Efficiency (CE) are used to evaluate performance of the ANFIS models in forecasting river flood. The values of the indices show that ANFIS model can accurately and reliably be used to forecast flood in a river system.

  13. Flood Forecasting in River System Using ANFIS

    SciTech Connect

    Ullah, Nazrin; Choudhury, P.

    2010-10-26

    The aim of the present study is to investigate applicability of artificial intelligence techniques such as ANFIS (Adaptive Neuro-Fuzzy Inference System) in forecasting flood flow in a river system. The proposed technique combines the learning ability of neural network with the transparent linguistic representation of fuzzy system. The technique is applied to forecast discharge at a downstream station using flow information at various upstream stations. A total of three years data has been selected for the implementation of this model. ANFIS models with various input structures and membership functions are constructed, trained and tested to evaluate efficiency of the models. Statistical indices such as Root Mean Square Error (RMSE), Correlation Coefficient (CORR) and Coefficient of Efficiency (CE) are used to evaluate performance of the ANFIS models in forecasting river flood. The values of the indices show that ANFIS model can accurately and reliably be used to forecast flood in a river system.

  14. Exploiting expert systems in cardiology: a comparative study.

    PubMed

    Economou, George-Peter K; Sourla, Efrosini; Stamatopoulou, Konstantina-Maria; Syrimpeis, Vasileios; Sioutas, Spyros; Tsakalidis, Athanasios; Tzimas, Giannis

    2015-01-01

    An improved Adaptive Neuro-Fuzzy Inference System (ANFIS) in the field of critical cardiovascular diseases is presented. The system stems from an earlier application based only on a Sugeno-type Fuzzy Expert System (FES) with the addition of an Artificial Neural Network (ANN) computational structure. Thus, inherent characteristics of ANNs, along with the human-like knowledge representation of fuzzy systems are integrated. The ANFIS has been utilized into building five different sub-systems, distinctly covering Coronary Disease, Hypertension, Atrial Fibrillation, Heart Failure, and Diabetes, hence aiding doctors of medicine (MDs), guide trainees, and encourage medical experts in their diagnoses centering a wide range of Cardiology. The Fuzzy Rules have been trimmed down and the ANNs have been optimized in order to focus into each particular disease and produce results ready-to-be applied to real-world patients. PMID:25417018

  15. An Adaptive Coordinated Control for an Offshore Wind Farm Connected VSC Based Multi-Terminal DC Transmission System

    NASA Astrophysics Data System (ADS)

    Kumar, M. Ajay; Srikanth, N. V.

    2014-11-01

    The voltage source converter (VSC) based multiterminal high voltage direct current (MTDC) transmission system is an interesting technical option to integrate offshore wind farms with the onshore grid due to its unique performance characteristics and reduced power loss via extruded DC cables. In order to enhance the reliability and stability of the MTDC system, an adaptive neuro fuzzy inference system (ANFIS) based coordinated control design has been addressed in this paper. A four terminal VSC-MTDC system which consists of an offshore wind farm and oil platform is implemented in MATLAB/ SimPowerSystems software. The proposed model is tested under different fault scenarios along with the converter outage and simulation results show that the novel coordinated control design has great dynamic stabilities and also the VSC-MTDC system can supply AC voltage of good quality to offshore loads during the disturbances.

  16. Auto-control of pumping operations in sewerage systems by rule-based fuzzy neural networks

    NASA Astrophysics Data System (ADS)

    Chiang, Y.-M.; Chang, L.-C.; Tsai, M.-J.; Wang, Y.-F.; Chang, F.-J.

    2011-01-01

    Pumping stations play an important role in flood mitigation in metropolitan areas. The existing sewerage systems, however, are facing a great challenge of fast rising peak flow resulting from urbanization and climate change. It is imperative to construct an efficient and accurate operating prediction model for pumping stations to simulate the drainage mechanism for discharging the rainwater in advance. In this study, we propose two rule-based fuzzy neural networks, adaptive neuro-fuzzy inference system (ANFIS) and counterpropagation fuzzy neural network for on-line predicting of the number of open and closed pumps of a pivotal pumping station in Taipei city up to a lead time of 20 min. The performance of ANFIS outperforms that of CFNN in terms of model efficiency, accuracy, and correctness. Furthermore, the results not only show the predictive water levels do contribute to the successfully operating pumping stations but also demonstrate the applicability and reliability of ANFIS in automatically controlling the urban sewerage systems.

  17. Auto-control of pumping operations in sewerage systems by rule-based fuzzy neural networks

    NASA Astrophysics Data System (ADS)

    Chiang, Y.-M.; Chang, L.-C.; Tsai, M.-J.; Wang, Y.-F.; Chang, F.-J.

    2010-09-01

    Pumping stations play an important role in flood mitigation in metropolitan areas. The existing sewerage systems, however, are facing a great challenge of fast rising peak flow resulting from urbanization and climate change. It is imperative to construct an efficient and accurate operating prediction model for pumping stations to simulate the drainage mechanism for discharging the rainwater in advance. In this study, we propose two rule-based fuzzy neural networks, adaptive neuro-fuzzy inference system (ANFIS) and counterpropagatiom fuzzy neural network (CFNN) for on-line predicting of the number of open and closed pumps of a pivotal pumping station in Taipei city up to a lead time of 20 min. The performance of ANFIS outperforms that of CFNN in terms of model efficiency, accuracy, and correctness. Furthermore, the results not only show the predictive water levels do contribute to the successfully operating pumping stations but also demonstrate the applicability and reliability of ANFIS in automatically controlling the urban sewerage systems.

  18. Inferring Regulatory Systems with Noisy Pathway Information

    E-print Network

    Zell, Andreas

    Inferring Regulatory Systems with Noisy Pathway Information C. Spieth, F. Streichert, N. Speer of inferring gene regulatory networks becomes more and more feasible. The major problem of most of these pathways is that they are very often faulty or describe only parts of a regulatory system due

  19. Single board system for fuzzy inference

    NASA Technical Reports Server (NTRS)

    Symon, James R.; Watanabe, Hiroyuki

    1991-01-01

    The very large scale integration (VLSI) implementation of a fuzzy logic inference mechanism allows the use of rule-based control and decision making in demanding real-time applications. Researchers designed a full custom VLSI inference engine. The chip was fabricated using CMOS technology. The chip consists of 688,000 transistors of which 476,000 are used for RAM memory. The fuzzy logic inference engine board system incorporates the custom designed integrated circuit into a standard VMEbus environment. The Fuzzy Logic system uses Transistor-Transistor Logic (TTL) parts to provide the interface between the Fuzzy chip and a standard, double height VMEbus backplane, allowing the chip to perform application process control through the VMEbus host. High level C language functions hide details of the hardware system interface from the applications level programmer. The first version of the board was installed on a robot at Oak Ridge National Laboratory in January of 1990.

  20. An Ada inference engine for expert systems

    NASA Technical Reports Server (NTRS)

    Lavallee, David B.

    1986-01-01

    The purpose is to investigate the feasibility of using Ada for rule-based expert systems with real-time performance requirements. This includes exploring the Ada features which give improved performance to expert systems as well as optimizing the tradeoffs or workarounds that the use of Ada may require. A prototype inference engine was built using Ada, and rule firing rates in excess of 500 per second were demonstrated on a single MC68000 processor. The knowledge base uses a directed acyclic graph to represent production lines. The graph allows the use of AND, OR, and NOT logical operators. The inference engine uses a combination of both forward and backward chaining in order to reach goals as quickly as possible. Future efforts will include additional investigation of multiprocessing to improve performance and creating a user interface allowing rule input in an Ada-like syntax. Investigation of multitasking and alternate knowledge base representations will help to analyze some of the performance issues as they relate to larger problems.

  1. Meta-learning framework applied in bioinformatics inference system design.

    PubMed

    Arredondo, Tomás; Ormazábal, Wladimir

    2015-01-01

    This paper describes a meta-learner inference system development framework which is applied and tested in the implementation of bioinformatic inference systems. These inference systems are used for the systematic classification of the best candidates for inclusion in bacterial metabolic pathway maps. This meta-learner-based approach utilises a workflow where the user provides feedback with final classification decisions which are stored in conjunction with analysed genetic sequences for periodic inference system training. The inference systems were trained and tested with three different data sets related to the bacterial degradation of aromatic compounds. The analysis of the meta-learner-based framework involved contrasting several different optimisation methods with various different parameters. The obtained inference systems were also contrasted with other standard classification methods with accurate prediction capabilities observed. PMID:26255380

  2. Inference by replication in densely connected systems.

    PubMed

    Neirotti, Juan P; Saad, David

    2007-10-01

    An efficient Bayesian inference method for problems that can be mapped onto dense graphs is presented. The approach is based on message passing where messages are averaged over a large number of replicated variable systems exposed to the same evidential nodes. An assumption about the symmetry of the solutions is required for carrying out the averages; here we extend the previous derivation based on a replica-symmetric- (RS)-like structure to include a more complex one-step replica-symmetry-breaking-like (1RSB-like) ansatz. To demonstrate the potential of the approach it is employed for studying critical properties of the Ising linear perceptron and for multiuser detection in code division multiple access (CDMA) under different noise models. Results obtained under the RS assumption in the noncritical regime give rise to a highly efficient signal detection algorithm in the context of CDMA; while in the critical regime one observes a first-order transition line that ends in a continuous phase transition point. Finite size effects are also observed. While the 1RSB ansatz is not required for the original problems, it was applied to the CDMA signal detection problem with a more complex noise model that exhibits RSB behavior, resulting in an improvement in performance. PMID:17995074

  3. Inferring internal structures of solar system bodies from electromagnetic induction

    E-print Network

    Strangeway, Robert J.

    Inferring internal structures of solar system bodies from electromagnetic induction Krishan Hood et al. 1999 #12;The principle behind electromagnetic induction B (t) Eddy currents BInducedCalculated from 3 D MHD simulations · Electromagnetic induction from a subsurface conductorconductor. ­ Obtained

  4. LOWER LEVEL INFERENCE CONTROL IN STATISTICAL DATABASE SYSTEMS

    SciTech Connect

    Lipton, D.L.; Wong, H.K.T.

    1984-02-01

    An inference is the process of transforming unclassified data values into confidential data values. Most previous research in inference control has studied the use of statistical aggregates to deduce individual records. However, several other types of inference are also possible. Unknown functional dependencies may be apparent to users who have 'expert' knowledge about the characteristics of a population. Some correlations between attributes may be concluded from 'commonly-known' facts about the world. To counter these threats, security managers should use random sampling of databases of similar populations, as well as expert systems. 'Expert' users of the DATABASE SYSTEM may form inferences from the variable performance of the user interface. Users may observe on-line turn-around time, accounting statistics. the error message received, and the point at which an interactive protocol sequence fails. One may obtain information about the frequency distributions of attribute values, and the validity of data object names from this information. At the back-end of a database system, improved software engineering practices will reduce opportunities to bypass functional units of the database system. The term 'DATA OBJECT' should be expanded to incorporate these data object types which generate new classes of threats. The security of DATABASES and DATABASE SySTEMS must be recognized as separate but related problems. Thus, by increased awareness of lower level inferences, system security managers may effectively nullify the threat posed by lower level inferences.

  5. An intelligent recovery progress evaluation system for ACL reconstructed subjects using integrated 3-D kinematics and EMG features.

    PubMed

    Malik, Owais A; Senanayake, S M N Arosha; Zaheer, Dansih

    2015-03-01

    An intelligent recovery evaluation system is presented for objective assessment and performance monitoring of anterior cruciate ligament reconstructed (ACL-R) subjects. The system acquires 3-D kinematics of tibiofemoral joint and electromyography (EMG) data from surrounding muscles during various ambulatory and balance testing activities through wireless body-mounted inertial and EMG sensors, respectively. An integrated feature set is generated based on different features extracted from data collected for each activity. The fuzzy clustering and adaptive neuro-fuzzy inference techniques are applied to these integrated feature sets in order to provide different recovery progress assessment indicators (e.g., current stage of recovery, percentage of recovery progress as compared to healthy group, etc.) for ACL-R subjects. The system was trained and tested on data collected from a group of healthy and ACL-R subjects. For recovery stage identification, the average testing accuracy of the system was found above 95% (95-99%) for ambulatory activities and above 80% (80-84%) for balance testing activities. The overall recovery evaluation performed by the proposed system was found consistent with the assessment made by the physiotherapists using standard subjective/objective scores. The validated system can potentially be used as a decision supporting tool by physiatrists, physiotherapists, and clinicians for quantitative rehabilitation analysis of ACL-R subjects in conjunction with the existing recovery monitoring systems. PMID:24801517

  6. Multi-objective Decision Based Available Transfer Capability in Deregulated Power System Using Heuristic Approaches

    NASA Astrophysics Data System (ADS)

    Pasam, Gopi Krishna; Manohar, T. Gowri

    2015-07-01

    Determination of available transfer capability (ATC) requires the use of experience, intuition and exact judgment in order to meet several significant aspects in the deregulated environment. Based on these points, this paper proposes two heuristic approaches to compute ATC. The first proposed heuristic algorithm integrates the five methods known as continuation repeated power flow, repeated optimal power flow, radial basis function neural network, back propagation neural network and adaptive neuro fuzzy inference system to obtain ATC. The second proposed heuristic model is used to obtain multiple ATC values. Out of these, a specific ATC value will be selected based on a number of social, economic, deregulated environmental constraints and related to specific applications like optimization, on-line monitoring, and ATC forecasting known as multi-objective decision based optimal ATC. The validity of results obtained through these proposed methods are scrupulously verified on various buses of the IEEE 24-bus reliable test system. The results presented and derived conclusions in this paper are very useful for planning, operation, maintaining of reliable power in any power system and its monitoring in an on-line environment of deregulated power system. In this way, the proposed heuristic methods would contribute the best possible approach to assess multiple objective ATC using integrated methods.

  7. Hybrid soft computing systems for reservoir PVT properties prediction

    NASA Astrophysics Data System (ADS)

    Khoukhi, Amar

    2012-07-01

    In reservoir engineering, the knowledge of Pressure-Volume-Temperature (PVT) properties is of great importance for many uses, such as well test analyses, reserve estimation, material balance calculations, inflow performance calculations, fluid flow in porous media and the evaluation of new formations for the potential development and enhancement oil recovery projects. The determination of these properties is a complex problem because laboratory-measured properties of rock samples ("cores") are only available from limited and isolated well locations and/or intervals. Several correlation models have been developed to relate these properties to other measures which are relatively abundant. These models include empirical correlations, statistical regression and artificial neural networks (ANNs). In this paper, a comprehensive study is conducted on the prediction of the bubble point pressure and oil formation volume factor using two hybrid of soft computing techniques; a genetically optimised neural network and a genetically enhanced subtractive clustering for the parameter identification of an adaptive neuro-fuzzy inference system. Simulation experiments are provided, showing the performance of the proposed techniques as compared with commonly used regression correlations, including standard artificial neural networks.

  8. FPGA Implementation of Fuzzy Inference System for Embedded Applications

    E-print Network

    -time systems, such as robotics and washing machines, are corrupted by unstructured, noisy changing, and unknown in a washing machine. The given results demonstrate the capability of such embedded controller in washing:- FPGA, Fuzzy logic, Fuzzy inference system, PM motor, Washing machine. INTRODUCTION The real world

  9. Modeling the Effects of Light and Sucrose on In Vitro Propagated Plants: A Multiscale System Analysis Using Artificial Intelligence Technology

    PubMed Central

    Gago, Jorge; Martínez-Núñez, Lourdes; Landín, Mariana; Flexas, Jaume; Gallego, Pedro P.

    2014-01-01

    Background Plant acclimation is a highly complex process, which cannot be fully understood by analysis at any one specific level (i.e. subcellular, cellular or whole plant scale). Various soft-computing techniques, such as neural networks or fuzzy logic, were designed to analyze complex multivariate data sets and might be used to model large such multiscale data sets in plant biology. Methodology and Principal Findings In this study we assessed the effectiveness of applying neuro-fuzzy logic to modeling the effects of light intensities and sucrose content/concentration in the in vitro culture of kiwifruit on plant acclimation, by modeling multivariate data from 14 parameters at different biological scales of organization. The model provides insights through application of 14 sets of straightforward rules and indicates that plants with lower stomatal aperture areas and higher photoinhibition and photoprotective status score best for acclimation. The model suggests the best condition for obtaining higher quality acclimatized plantlets is the combination of 2.3% sucrose and photonflux of 122–130 µmol m?2 s?1. Conclusions Our results demonstrate that artificial intelligence models are not only successful in identifying complex non-linear interactions among variables, by integrating large-scale data sets from different levels of biological organization in a holistic plant systems-biology approach, but can also be used successfully for inferring new results without further experimental work. PMID:24465829

  10. An expert system shell for inferring vegetation characteristics

    NASA Technical Reports Server (NTRS)

    Harrison, P. Ann; Harrison, Patrick R.

    1992-01-01

    The NASA VEGetation Workbench (VEG) is a knowledge based system that infers vegetation characteristics from reflectance data. The report describes the extensions that have been made to the first generation version of VEG. An interface to a file of unkown cover type data has been constructed. An interface that allows the results of VEG to be written to a file has been implemented. A learning system that learns class descriptions from a data base of historical cover type data and then uses the learned class descriptions to classify an unknown sample has been built. This system has an interface that integrates it into the rest of VEG. The VEG subgoal PROPORTION.GROUND.COVER has been completed and a number of additional techniques that infer the proportion ground cover of a sample have been implemented.

  11. Evaluation of fuzzy inference systems using fuzzy least squares

    NASA Technical Reports Server (NTRS)

    Barone, Joseph M.

    1992-01-01

    Efforts to develop evaluation methods for fuzzy inference systems which are not based on crisp, quantitative data or processes (i.e., where the phenomenon the system is built to describe or control is inherently fuzzy) are just beginning. This paper suggests that the method of fuzzy least squares can be used to perform such evaluations. Regressing the desired outputs onto the inferred outputs can provide both global and local measures of success. The global measures have some value in an absolute sense, but they are particularly useful when competing solutions (e.g., different numbers of rules, different fuzzy input partitions) are being compared. The local measure described here can be used to identify specific areas of poor fit where special measures (e.g., the use of emphatic or suppressive rules) can be applied. Several examples are discussed which illustrate the applicability of the method as an evaluation tool.

  12. Inference and learning in sparse systems with multiple states

    SciTech Connect

    Braunstein, A.; Ramezanpour, A.; Zhang, P.; Zecchina, R.

    2011-05-15

    We discuss how inference can be performed when data are sampled from the nonergodic phase of systems with multiple attractors. We take as a model system the finite connectivity Hopfield model in the memory phase and suggest a cavity method approach to reconstruct the couplings when the data are separately sampled from few attractor states. We also show how the inference results can be converted into a learning protocol for neural networks in which patterns are presented through weak external fields. The protocol is simple and fully local, and is able to store patterns with a finite overlap with the input patterns without ever reaching a spin-glass phase where all memories are lost.

  13. An expert system shell for inferring vegetation characteristics

    NASA Technical Reports Server (NTRS)

    Harrison, P. Ann; Harrison, Patrick R.

    1993-01-01

    The NASA VEGetation Workbench (VEG) is a knowledge based system that infers vegetation characteristics from reflectance data. VEG is described in detail in several references. The first generation version of VEG was extended. In the first year of this contract, an interface to a file of unknown cover type data was constructed. An interface that allowed the results of VEG to be written to a file was also implemented. A learning system that learned class descriptions from a data base of historical cover type data and then used the learned class descriptions to classify an unknown sample was built. This system had an interface that integrated it into the rest of VEG. The VEG subgoal PROPORTION.GROUND.COVER was completed and a number of additional techniques that inferred the proportion ground cover of a sample were implemented. This work was previously described. The work carried out in the second year of the contract is described. The historical cover type database was removed from VEG and stored as a series of flat files that are external to VEG. An interface to the files was provided. The framework and interface for two new VEG subgoals that estimate the atmospheric effect on reflectance data were built. A new interface that allows the scientist to add techniques to VEG without assistance from the developer was designed and implemented. A prototype Help System that allows the user to get more information about each screen in the VEG interface was also added to VEG.

  14. ANUBIS: artificial neuromodulation using a Bayesian inference system.

    PubMed

    Smith, Benjamin J H; Saaj, Chakravarthini M; Allouis, Elie

    2013-01-01

    Gain tuning is a crucial part of controller design and depends not only on an accurate understanding of the system in question, but also on the designer's ability to predict what disturbances and other perturbations the system will encounter throughout its operation. This letter presents ANUBIS (artificial neuromodulation using a Bayesian inference system), a novel biologically inspired technique for automatically tuning controller parameters in real time. ANUBIS is based on the Bayesian brain concept and modifies it by incorporating a model of the neuromodulatory system comprising four artificial neuromodulators. It has been applied to the controller of EchinoBot, a prototype walking rover for Martian exploration. ANUBIS has been implemented at three levels of the controller; gait generation, foot trajectory planning using Bézier curves, and foot trajectory tracking using a terminal sliding mode controller. We compare the results to a similar system that has been tuned using a multilayer perceptron. The use of Bayesian inference means that the system retains mathematical interpretability, unlike other intelligent tuning techniques, which use neural networks, fuzzy logic, or evolutionary algorithms. The simulation results show that ANUBIS provides significant improvements in efficiency and adaptability of the three controller components; it allows the robot to react to obstacles and uncertainties faster than the system tuned with the MLP, while maintaining stability and accuracy. As well as advancing rover autonomy, ANUBIS could also be applied to other situations where operating conditions are likely to change or cannot be accurately modeled in advance, such as process control. In addition, it demonstrates one way in which neuromodulation could fit into the Bayesian brain framework. PMID:22970879

  15. Computational Intelligence for Medical Knowledge Acquisition with Application to Glaucoma

    E-print Network

    Ulieru, Mihaela

    Computational Intelligence for Medical Knowledge Acquisition with Application to Glaucoma Nicolae of glaucoma. The knowledge acquired is embedded in a fuzzy logic inference system. The resulting Neuro-fuzzy Glaucoma Diagnosis and Prediction System is expected to lower the effort, difficulties and risk cost

  16. Erratum: Erratum to Central European Journal of Engineering, Volume 4, Issue 1

    NASA Astrophysics Data System (ADS)

    Kumar, M. Ajay; Srikanth, N. V.

    2014-06-01

    Paper by M. Ajay Kumar, N. V. Srikanth, et al. "An adaptive neuro fuzzy inference system controlled space cector pulse width modulation based HVDC light transmission system under AC fault conditions" in Volume 4, Issue 1, 27-38/March 2014 doi: 10.2478/s13531-013-0143-4 contains an error in the title. The correct title is presented below

  17. Erratum to Central European Journal of Engineering, Volume 4, Issue 1

    NASA Astrophysics Data System (ADS)

    Kumar, M.; Srikanth, N.

    2014-06-01

    Paper by M. Ajay Kumar, N. V. Srikanth, et al. "An adaptive neuro fuzzy inference system controlled space cector pulse width modulation based HVDC light transmission system under AC fault conditions" in Volume 4, Issue 1, 27-38/March 2014 doi: 10.2478/s13531-013-0143-4 contains an error in the title. The correct title is presented below

  18. A Self-Tuning Kalman Filter for Autonomous Navigation Using the Global Positioning System (GPS)

    NASA Technical Reports Server (NTRS)

    Truong, Son H.

    1999-01-01

    Most navigation systems currently operated by NASA are ground-based, and require extensive support to produce accurate results. Recently developed systems that use Kalman filter and GPS (Global Positioning Systems) data for orbit determination greatly reduce dependency on ground support, and have potential to provide significant economies for NASA spacecraft navigation. These systems, however, still rely on manual tuning from analysts. A sophisticated neuro-fuzzy component fully integrated with the flight navigation system can perform the self-tuning capability for the Kalman filter and help the navigation system recover from estimation errors in real time.

  19. A Self-Tuning Kalman Filter for Autonomous Navigation using the Global Positioning System (GPS)

    NASA Technical Reports Server (NTRS)

    Truong, S. H.

    1999-01-01

    Most navigation systems currently operated by NASA are ground-based, and require extensive support to produce accurate results. Recently developed systems that use Kalman filter and GPS data for orbit determination greatly reduce dependency on ground support, and have potential to provide significant economies for NASA spacecraft navigation. These systems, however, still rely on manual tuning from analysts. A sophisticated neuro-fuzzy component fully integrated with the flight navigation system can perform the self-tuning capability for the Kalman filter and help the navigation system recover from estimation errors in real time.

  20. Data Level Inference Detection in Database Systems Raymond W. Yip and Karl N. Levitt

    E-print Network

    Yoo, S. J. Ben

    Data Level Inference Detection in Database Systems Raymond W. Yip and Karl N. Levitt Department of Computer Science University of California, Davis One Shields Avenue, Davis CA 95616 Abstract Existing work on inference detection for database systems mainly employ functional dependencies in the database schema

  1. A primer on Bayesian inference for biophysical systems.

    PubMed

    Hines, Keegan E

    2015-05-01

    Bayesian inference is a powerful statistical paradigm that has gained popularity in many fields of science, but adoption has been somewhat slower in biophysics. Here, I provide an accessible tutorial on the use of Bayesian methods by focusing on example applications that will be familiar to biophysicists. I first discuss the goals of Bayesian inference and show simple examples of posterior inference using conjugate priors. I then describe Markov chain Monte Carlo sampling and, in particular, discuss Gibbs sampling and Metropolis random walk algorithms with reference to detailed examples. These Bayesian methods (with the aid of Markov chain Monte Carlo sampling) provide a generalizable way of rigorously addressing parameter inference and identifiability for arbitrarily complicated models. PMID:25954869

  2. A Modular Artificial Intelligence Inference Engine System (MAIS) for support of on orbit experiments

    NASA Technical Reports Server (NTRS)

    Hancock, Thomas M., III

    1994-01-01

    This paper describes a Modular Artificial Intelligence Inference Engine System (MAIS) support tool that would provide health and status monitoring, cognitive replanning, analysis and support of on-orbit Space Station, Spacelab experiments and systems.

  3. From free energy measurements to free energy inference in small systems Felix Ritort

    E-print Network

    Potsdam, Universität

    From free energy measurements to free energy inference in small systems the knowledge of the free energy of nucleic acid and protein structures the free energy of pure equilibrium states, FTs have been extended

  4. A comparison of various artificial intelligence approaches performance for estimating suspended sediment load of river systems: a case study in United States.

    PubMed

    Olyaie, Ehsan; Banejad, Hossein; Chau, Kwok-Wing; Melesse, Assefa M

    2015-04-01

    Accurate and reliable suspended sediment load (SSL) prediction models are necessary for planning and management of water resource structures. More recently, soft computing techniques have been used in hydrological and environmental modeling. The present paper compared the accuracy of three different soft computing methods, namely, artificial neural networks (ANNs), adaptive neuro-fuzzy inference system (ANFIS), coupled wavelet and neural network (WANN), and conventional sediment rating curve (SRC) approaches for estimating the daily SSL in two gauging stations in the USA. The performances of these models were measured by the coefficient of correlation (R), Nash-Sutcliffe efficiency coefficient (CE), root-mean-square error (RMSE), and mean absolute percentage error (MAPE) to choose the best fit model. Obtained results demonstrated that applied soft computing models were in good agreement with the observed SSL values, while they depicted better results than the conventional SRC method. The comparison of estimation accuracies of various models illustrated that the WANN was the most accurate model in SSL estimation in comparison to other models. For example, in Flathead River station, the determination coefficient was 0.91 for the best WANN model, while it was 0.65, 0.75, and 0.481 for the best ANN, ANFIS, and SRC models, and also in the Santa Clara River, amounts of this statistical criteria was 0.92 for the best WANN model, while it was 0.76, 0.78, and 0.39 for the best ANN, ANFIS, and SRC models, respectively. Also, the values of cumulative suspended sediment load computed by the best WANN model were closer to the observed data than the other models. In general, results indicated that the WANN model could satisfactorily mimic phenomenon, acceptably estimate cumulative SSL, and reasonably predict peak SSL values. PMID:25787167

  5. Artificial frame filling using adaptive neural fuzzy inference system for particle image velocimetry dataset

    NASA Astrophysics Data System (ADS)

    Akdemir, Bayram; Do?an, Sercan; Aksoy, Muharrem H.; Canli, Eyüp; Özgören, Muammer

    2015-03-01

    Liquid behaviors are very important for many areas especially for Mechanical Engineering. Fast camera is a way to observe and search the liquid behaviors. Camera traces the dust or colored markers travelling in the liquid and takes many pictures in a second as possible as. Every image has large data structure due to resolution. For fast liquid velocity, there is not easy to evaluate or make a fluent frame after the taken images. Artificial intelligence has much popularity in science to solve the nonlinear problems. Adaptive neural fuzzy inference system is a common artificial intelligence in literature. Any particle velocity in a liquid has two dimension speed and its derivatives. Adaptive Neural Fuzzy Inference System has been used to create an artificial frame between previous and post frames as offline. Adaptive neural fuzzy inference system uses velocities and vorticities to create a crossing point vector between previous and post points. In this study, Adaptive Neural Fuzzy Inference System has been used to fill virtual frames among the real frames in order to improve image continuity. So this evaluation makes the images much understandable at chaotic or vorticity points. After executed adaptive neural fuzzy inference system, the image dataset increase two times and has a sequence as virtual and real, respectively. The obtained success is evaluated using R2 testing and mean squared error. R2 testing has a statistical importance about similarity and 0.82, 0.81, 0.85 and 0.8 were obtained for velocities and derivatives, respectively.

  6. a Study of K-P Interaction at High Energy Using Adaptive Fuzzy Inference System Interactions

    NASA Astrophysics Data System (ADS)

    El-Bakry, M. Y.

    Adaptive Network Fuzzy Inference System (ANFIS) is an artificial intelligence (AI)-based technique that proved efficient in a variety of problems such as classification, recognition and modeling of complex systems. This paper utilizes the adaptive network fuzzy inference system to model the K-P interactions. The ANFIS-based K-P model simulates the multiplicity distribution of charged pions at different high energies. The results showed very accurate fitting to the experimental data recommending it to be a good alternative to other theoretical techniques.

  7. Prediction of Compressional, Shear, and Stoneley Wave Velocities from Conventional Well Log Data Using a Committee Machine with Intelligent Systems

    NASA Astrophysics Data System (ADS)

    Asoodeh, Mojtaba; Bagheripour, Parisa

    2012-01-01

    Measurement of compressional, shear, and Stoneley wave velocities, carried out by dipole sonic imager (DSI) logs, provides invaluable data in geophysical interpretation, geomechanical studies and hydrocarbon reservoir characterization. The presented study proposes an improved methodology for making a quantitative formulation between conventional well logs and sonic wave velocities. First, sonic wave velocities were predicted from conventional well logs using artificial neural network, fuzzy logic, and neuro-fuzzy algorithms. Subsequently, a committee machine with intelligent systems was constructed by virtue of hybrid genetic algorithm-pattern search technique while outputs of artificial neural network, fuzzy logic and neuro-fuzzy models were used as inputs of the committee machine. It is capable of improving the accuracy of final prediction through integrating the outputs of aforementioned intelligent systems. The hybrid genetic algorithm-pattern search tool, embodied in the structure of committee machine, assigns a weight factor to each individual intelligent system, indicating its involvement in overall prediction of DSI parameters. This methodology was implemented in Asmari formation, which is the major carbonate reservoir rock of Iranian oil field. A group of 1,640 data points was used to construct the intelligent model, and a group of 800 data points was employed to assess the reliability of the proposed model. The results showed that the committee machine with intelligent systems performed more effectively compared with individual intelligent systems performing alone.

  8. Efficient Inference of Parsimonious Phenomenological Models of Cellular Dynamics Using S-Systems and Alternating Regression

    PubMed Central

    Daniels, Bryan C.; Nemenman, Ilya

    2015-01-01

    The nonlinearity of dynamics in systems biology makes it hard to infer them from experimental data. Simple linear models are computationally efficient, but cannot incorporate these important nonlinearities. An adaptive method based on the S-system formalism, which is a sensible representation of nonlinear mass-action kinetics typically found in cellular dynamics, maintains the efficiency of linear regression. We combine this approach with adaptive model selection to obtain efficient and parsimonious representations of cellular dynamics. The approach is tested by inferring the dynamics of yeast glycolysis from simulated data. With little computing time, it produces dynamical models with high predictive power and with structural complexity adapted to the difficulty of the inference problem. PMID:25806510

  9. Parameter and Structure Inference for Nonlinear Dynamical Systems

    NASA Technical Reports Server (NTRS)

    Morris, Robin D.; Smelyanskiy, Vadim N.; Millonas, Mark

    2006-01-01

    A great many systems can be modeled in the non-linear dynamical systems framework, as x = f(x) + xi(t), where f() is the potential function for the system, and xi is the excitation noise. Modeling the potential using a set of basis functions, we derive the posterior for the basis coefficients. A more challenging problem is to determine the set of basis functions that are required to model a particular system. We show that using the Bayesian Information Criteria (BIC) to rank models, and the beam search technique, that we can accurately determine the structure of simple non-linear dynamical system models, and the structure of the coupling between non-linear dynamical systems where the individual systems are known. This last case has important ecological applications.

  10. TAS --A Generic Window Inference System Christoph Luth1

    E-print Network

    Lüth, Christoph - Deutschen Forschungszentrum für Künstliche Intelligenz & Fachbereich 3

    development. However, many of these systems such as CIP [3], KIDS [21] or PROSPECTRA [12] suffered from a lack to obtain a user-friendly tool implementing transformational reasoning, with an open system architecture an open architecture to build graphical user in- terfaces for theorem provers in a functional language

  11. FINDS: A fault inferring nonlinear detection system. User's guide

    NASA Technical Reports Server (NTRS)

    Lancraft, R. E.; Caglayan, A. K.

    1983-01-01

    The computer program FINDS is written in FORTRAN-77, and is intended for operation on a VAX 11-780 or 11-750 super minicomputer, using the VMS operating system. The program detects, isolates, and compensates for failures in navigation aid instruments and onboard flight control and navigation sensors of a Terminal Configured Vehicle aircraft in a Microwave Landing System environment. In addition, FINDS provides sensor fault tolerant estimates for the aircraft states which are then used by an automatic guidance and control system to land the aircraft along a prescribed path. FINDS monitors for failures by evaluating all sensor outputs simultaneously using the nonlinear analytic relationships between the various sensor outputs arising from the aircraft point mass equations of motion. Hence, FINDS is an integrated sensor failure detection and isolation system.

  12. Incorporating Spontaneous Reporting System Data to Aid Causal Inference in Longitudinal Healthcare

    E-print Network

    Aickelin, Uwe

    Incorporating Spontaneous Reporting System Data to Aid Causal Inference in Longitudinal Healthcare with big data. Unfortunately the false positive rate was still higher than desired, motivating further Data Jenna M. Reps and Uwe Aickelin School of Computer Science University of Nottingham Nottingham, NG8

  13. Explorations of electric current system in solar active regions. I - Empirical inferences of the current flows

    NASA Technical Reports Server (NTRS)

    Ding, Y. J.; Hong, Q. F.; Hagyard, M. J.; Deloach, A. C.; Liu, X. P.

    1987-01-01

    Techniques to identify sources of electric current systems and their channels of flow in solar active regions are explored. Measured photospheric vector magnetic fields together with high-resolution white-light and H-alpha filtergrams provide the data base to derive the current systems in the photosphere and chromosphere. As an example, the techniques are then applied to infer current systems in AR 2372 in early April 1980.

  14. Variational mean-field algorithm for efficient inference in large systems of stochastic differential equations

    NASA Astrophysics Data System (ADS)

    Vrettas, Michail D.; Opper, Manfred; Cornford, Dan

    2015-01-01

    This work introduces a Gaussian variational mean-field approximation for inference in dynamical systems which can be modeled by ordinary stochastic differential equations. This new approach allows one to express the variational free energy as a functional of the marginal moments of the approximating Gaussian process. A restriction of the moment equations to piecewise polynomial functions, over time, dramatically reduces the complexity of approximate inference for stochastic differential equation models and makes it comparable to that of discrete time hidden Markov models. The algorithm is demonstrated on state and parameter estimation for nonlinear problems with up to 1000 dimensional state vectors and compares the results empirically with various well-known inference methodologies.

  15. Earth system sensitivity inferred from Pliocene modelling and data

    USGS Publications Warehouse

    Lunt, D.J.; Haywood, A.M.; Schmidt, G.A.; Salzmann, U.; Valdes, P.J.; Dowsett, H.J.

    2010-01-01

    Quantifying the equilibrium response of global temperatures to an increase in atmospheric carbon dioxide concentrations is one of the cornerstones of climate research. Components of the Earths climate system that vary over long timescales, such as ice sheets and vegetation, could have an important effect on this temperature sensitivity, but have often been neglected. Here we use a coupled atmosphere-ocean general circulation model to simulate the climate of the mid-Pliocene warm period (about three million years ago), and analyse the forcings and feedbacks that contributed to the relatively warm temperatures. Furthermore, we compare our simulation with proxy records of mid-Pliocene sea surface temperature. Taking these lines of evidence together, we estimate that the response of the Earth system to elevated atmospheric carbon dioxide concentrations is 30-50% greater than the response based on those fast-adjusting components of the climate system that are used traditionally to estimate climate sensitivity. We conclude that targets for the long-term stabilization of atmospheric greenhouse-gas concentrations aimed at preventing a dangerous human interference with the climate system should take into account this higher sensitivity of the Earth system. ?? 2010 Macmillan Publishers Limited. All rights reserved.

  16. On Inferring Autonomous System Relationships in the Internet

    E-print Network

    Akella, Aditya

    allows each autonomous system (AS) to choose its own administrative policy in selecting routes and propagating reachability information to others. These routing policies are constrained by the contractual commercial agreements between administrative domains. For example, an AS sets its policy so that it does

  17. Artificial Intelligence Techniques for Steam Generator Modelling

    E-print Network

    Wright, Sarah

    2008-01-01

    This paper investigates the use of different Artificial Intelligence methods to predict the values of several continuous variables from a Steam Generator. The objective was to determine how the different artificial intelligence methods performed in making predictions on the given dataset. The artificial intelligence methods evaluated were Neural Networks, Support Vector Machines, and Adaptive Neuro-Fuzzy Inference Systems. The types of neural networks investigated were Multi-Layer Perceptions, and Radial Basis Function. Bayesian and committee techniques were applied to these neural networks. Each of the AI methods considered was simulated in Matlab. The results of the simulations showed that all the AI methods were capable of predicting the Steam Generator data reasonably accurately. However, the Adaptive Neuro-Fuzzy Inference system out performed the other methods in terms of accuracy and ease of implementation, while still achieving a fast execution time as well as a reasonable training time.

  18. Large-Scale Optimization for Bayesian Inference in Complex Systems

    SciTech Connect

    Willcox, Karen; Marzouk, Youssef

    2013-11-12

    The SAGUARO (Scalable Algorithms for Groundwater Uncertainty Analysis and Robust Optimization) Project focused on the development of scalable numerical algorithms for large-scale Bayesian inversion in complex systems that capitalize on advances in large-scale simulation-based optimization and inversion methods. The project was a collaborative effort among MIT, the University of Texas at Austin, Georgia Institute of Technology, and Sandia National Laboratories. The research was directed in three complementary areas: efficient approximations of the Hessian operator, reductions in complexity of forward simulations via stochastic spectral approximations and model reduction, and employing large-scale optimization concepts to accelerate sampling. The MIT--Sandia component of the SAGUARO Project addressed the intractability of conventional sampling methods for large-scale statistical inverse problems by devising reduced-order models that are faithful to the full-order model over a wide range of parameter values; sampling then employs the reduced model rather than the full model, resulting in very large computational savings. Results indicate little effect on the computed posterior distribution. On the other hand, in the Texas--Georgia Tech component of the project, we retain the full-order model, but exploit inverse problem structure (adjoint-based gradients and partial Hessian information of the parameter-to-observation map) to implicitly extract lower dimensional information on the posterior distribution; this greatly speeds up sampling methods, so that fewer sampling points are needed. We can think of these two approaches as ``reduce then sample'' and ``sample then reduce.'' In fact, these two approaches are complementary, and can be used in conjunction with each other. Moreover, they both exploit deterministic inverse problem structure, in the form of adjoint-based gradient and Hessian information of the underlying parameter-to-observation map, to achieve their speedups.

  19. Inference for ecological dynamical systems: a case study of two endemic diseases.

    PubMed

    Vasco, Daniel A

    2012-01-01

    A Bayesian Markov chain Monte Carlo method is used to infer parameters for an open stochastic epidemiological modEL: the Markovian susceptible-infected-recovered (SIR) model, which is suitable for modeling and simulating recurrent epidemics. This allows exploring two major problems of inference appearing in many mechanistic population models. First, trajectories of these processes are often only partly observed. For example, during an epidemic the transmission process is only partly observable: one cannot record infection times. Therefore, one only records cases (infections) as the observations. As a result some means of imputing or reconstructing individuals in the susceptible cases class must be accomplished. Second, the official reporting of observations (cases in epidemiology) is typically done not as they are actually recorded but at some temporal interval over which they have been aggregated. To address these issues, this paper investigates the following problems. Parameter inference for a perfectly sampled open Markovian SIR is first considered. Next inference for an imperfectly observed sample path of the system is studied. Although this second problem has been solved for the case of closed epidemics, it has proven quite difficult for the case of open recurrent epidemics. Lastly, application of the statistical theory is made to measles and pertussis epidemic time series data from 60 UK cities. PMID:22536295

  20. FINDS: A fault inferring nonlinear detection system programmers manual, version 3.0

    NASA Technical Reports Server (NTRS)

    Lancraft, R. E.

    1985-01-01

    Detailed software documentation of the digital computer program FINDS (Fault Inferring Nonlinear Detection System) Version 3.0 is provided. FINDS is a highly modular and extensible computer program designed to monitor and detect sensor failures, while at the same time providing reliable state estimates. In this version of the program the FINDS methodology is used to detect, isolate, and compensate for failures in simulated avionics sensors used by the Advanced Transport Operating Systems (ATOPS) Transport System Research Vehicle (TSRV) in a Microwave Landing System (MLS) environment. It is intended that this report serve as a programmers guide to aid in the maintenance, modification, and revision of the FINDS software.

  1. Application of ANFIS to Phase Estimation for Multiple Phase Shift Keying

    NASA Technical Reports Server (NTRS)

    Drake, Jeffrey T.; Prasad, Nadipuram R.

    2000-01-01

    The paper discusses a novel use of Adaptive Neuro-Fuzzy Inference Systems (ANFIS) for estimating phase in Multiple Phase Shift Keying (M-PSK) modulation. A brief overview of communications phase estimation is provided. The modeling of both general open-loop, and closed-loop phase estimation schemes for M-PSK symbols with unknown structure are discussed. Preliminary performance results from simulation of the above schemes are presented.

  2. Complexity Characterization in a Probabilistic Approach to Dynamical Systems Through Information Geometry and Inductive Inference

    E-print Network

    Ali, S A; Giffin, A; Kim, D -H

    2012-01-01

    Information geometric techniques and inductive inference methods hold great promise for solving computational problems of interest in classical and quantum physics, especially with regard to complexity characterization of dynamical systems in terms of their probabilistic description on curved statistical manifolds. In this article, we investigate the possibility of describing the macroscopic behavior of complex systems in terms of the underlying statistical structure of their microscopic degrees of freedom by use of statistical inductive inference and information geometry. We review the Maximum Relative Entropy (MrE) formalism and the theoretical structure of the information geometrodynamical approach to chaos (IGAC) on statistical manifolds. Special focus is devoted to the description of the roles played by the sectional curvature, the Jacobi field intensity and the information geometrodynamical entropy (IGE). These quantities serve as powerful information geometric complexity measures of information-constra...

  3. Extending the functional equivalence of radial basis function networks and fuzzy inference systems.

    PubMed

    Hunt, K J; Haas, R; Murray-Smith, R

    1996-01-01

    We establish the functional equivalence of a generalized class of Gaussian radial basis function (RBFs) networks and the full Takagi-Sugeno model (1983) of fuzzy inference. This generalizes an existing result which applies to the standard Gaussian RBF network and a restricted form of the Takagi-Sugeno fuzzy system. The more general framework allows the removal of some of the restrictive conditions of the previous result. PMID:18263474

  4. On the functional equivalence of fuzzy inference systems and spline-based networks.

    PubMed

    Hunt, K J; Haas, R; Brown, M

    1995-06-01

    The conditions under which spline-based networks are functionally equivalent to the Takagi-Sugeno-model of fuzzy inference are formally established. We consider a generalized form of basis function network whose basis functions are splines. The result admits a wide range of fuzzy membership functions which are commonly encountered in fuzzy systems design. We use the theoretical background of functional equivalence to develop a hybrid fuzzy-spline net for inverse dynamic modeling of a hydraulically driven robot manipulator. PMID:7496588

  5. A novel bridge scour monitoring and prediction system

    NASA Astrophysics Data System (ADS)

    Valyrakis, Manousos; Michalis, Panagiotis; Zhang, Hanqing

    2015-04-01

    Earth's surface is continuously shaped due to the action of geophysical flows. Erosion due to the flow of water in river systems has been identified as a key problem in preserving ecological health but also a threat to our built environment and critical infrastructure, worldwide. As an example, it has been estimated that a major reason for bridge failure is due to scour. Even though the flow past bridge piers has been investigated both experimentally and numerically, and the mechanisms of scouring are relatively understood, there still lacks a tool that can offer fast and reliable predictions. Most of the existing formulas for prediction of bridge pier scour depth are empirical in nature, based on a limited range of data or for piers of specific shape. In this work, the use of a novel methodology is proposed for the prediction of bridge scour. Specifically, the use of an Adaptive Neuro-Fuzzy Inference System (ANFIS) is proposed to estimate the scour depth around bridge piers. In particular, various complexity architectures are sequentially built, in order to identify the optimal for scour depth predictions, using appropriate training and validation subsets obtained from the USGS database (and pre-processed to remove incomplete records). The model has five variables, namely the effective pier width (b), the approach velocity (v), the approach depth (y), the mean grain diameter (D50) and the skew to flow. Simulations are conducted with data groups (bed material type, pier type and shape) and different number of input variables, to produce reduced complexity and easily interpretable models. Analysis and comparison of the results indicate that the developed ANFIS model has high accuracy and outstanding generalization ability for prediction of scour parameters. The effective pier width (as opposed to skew to flow) is amongst the most relevant input parameters for the estimation. Training of the system to new bridge geometries and flow conditions can be achieved by obtaining real time data, via novel electromagnetic sensors monitoring scour depth. Once the model is trained with data representative of the new system, bridge scour prediction can be performed for high/design flows or floods.

  6. Network inference of AP pattern formation system in D.melanogaster by structural equation modeling

    NASA Astrophysics Data System (ADS)

    Aburatani, S.; Toh, H.

    2014-03-01

    Within the field of systems biology, revealing the control systems functioning during embryogenesis is an important task. To clarify the mechanisms controlling sequential events, the relationships between various factors and the expression of specific genes should be determined. In this study, we applied a method based on Structural Equation Modeling (SEM), combined with factor analysis. SEM can include the latent variables within the constructed model and infer the relationships among the latent and observed variables, as a network model. We improved a method for the construction of initial models for the SEM calculation, and applied our approach to estimate the regulatory network for Antero-Posterior (AP) pattern formation in D. melanogaster embryogenesis. In this new approach, we combined cross-correlation and partial correlation to summarize the temporal information and to extract the direct interactions from the gene expression profiles. In the inferred model, 18 transcription factor genes were regulated by not only the expression of other genes, but also the estimated factors. Since each factor regulated the same type of genes, these factors were considered to be involved in maternal effects or spatial morphogen distributions. The interpretation of the inferred network model allowed us to reveal the regulatory mechanism for the patterning along the head to tail axis in D. melanogaster.

  7. Neuro-fuzzy TSK network for approximation Stanislaw Osowski

    E-print Network

    Osowski, Stanislaw

    of values of the variable x. To the most popular types of membership functions belong the triangle, trapezoidal, gaussian or bell functions. We will use here the generalized description of the bell function

  8. A new Multiple ANFIS model for classification of hemiplegic gait.

    PubMed

    Yardimci, A; Asilkan, O

    2014-01-01

    Neuro-fuzzy system is a combination of neural network and fuzzy system in such a way that neural network learning algorithms, is used to determine parameters of the fuzzy system. This paper describes the application of multiple adaptive neuro-fuzzy inference system (MANFIS) model which has hybrid learning algorithm for classification of hemiplegic gait acceleration (HGA) signals. Decision making was performed in two stages: feature extraction using the wavelet transforms (WT) and the ANFIS trained with the backpropagation gradient descent method in combination with the least squares method. The performance of the ANFIS model was evaluated in terms of training performance and classification accuracies and the results confirmed that the proposed ANFIS model has potential in classifying the HGA signals. PMID:25160151

  9. Application of Soft Computing in Coherent Communications Phase Synchronization

    NASA Technical Reports Server (NTRS)

    Drake, Jeffrey T.; Prasad, Nadipuram R.

    2000-01-01

    The use of soft computing techniques in coherent communications phase synchronization provides an alternative to analytical or hard computing methods. This paper discusses a novel use of Adaptive Neuro-Fuzzy Inference Systems (ANFIS) for phase synchronization in coherent communications systems utilizing Multiple Phase Shift Keying (MPSK) modulation. A brief overview of the M-PSK digital communications bandpass modulation technique is presented and it's requisite need for phase synchronization is discussed. We briefly describe the hybrid platform developed by Jang that incorporates fuzzy/neural structures namely the, Adaptive Neuro-Fuzzy Interference Systems (ANFIS). We then discuss application of ANFIS to phase estimation for M-PSK. The modeling of both explicit, and implicit phase estimation schemes for M-PSK symbols with unknown structure are discussed. Performance results from simulation of the above scheme is presented.

  10. Nested sampling for parameter inference in systems biology: application to an exemplar circadian model

    PubMed Central

    2013-01-01

    Background Model selection and parameter inference are complex problems that have yet to be fully addressed in systems biology. In contrast with parameter optimisation, parameter inference computes both the parameter means and their standard deviations (or full posterior distributions), thus yielding important information on the extent to which the data and the model topology constrain the inferred parameter values. Results We report on the application of nested sampling, a statistical approach to computing the Bayesian evidence Z, to the inference of parameters, and the estimation of log Z in an established model of circadian rhythms. A ten-fold difference in the coefficient of variation between degradation and transcription parameters is demonstrated. We further show that the uncertainty remaining in the parameter values is reduced by the analysis of increasing numbers of circadian cycles of data, up to 4 cycles, but is unaffected by sampling the data more frequently. Novel algorithms for calculating the likelihood of a model, and a characterisation of the performance of the nested sampling algorithm are also reported. The methods we develop considerably improve the computational efficiency of the likelihood calculation, and of the exploratory step within nested sampling. Conclusions We have demonstrated in an exemplar circadian model that the estimates of posterior parameter densities (as summarised by parameter means and standard deviations) are influenced predominately by the length of the time series, becoming more narrowly constrained as the number of circadian cycles considered increases. We have also shown the utility of the coefficient of variation for discriminating between highly-constrained and less-well constrained parameters. PMID:23899119

  11. Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure

    PubMed Central

    Hanemaaijer, Mark; Röling, Wilfred F. M.; Olivier, Brett G.; Khandelwal, Ruchir A.; Teusink, Bas; Bruggeman, Frank J.

    2015-01-01

    Microbial communities play important roles in health, industrial applications and earth's ecosystems. With current molecular techniques we can characterize these systems in unprecedented detail. However, such methods provide little mechanistic insight into how the genetic properties and the dynamic couplings between individual microorganisms give rise to their dynamic activities. Neither do they give insight into what we call “the community state”, that is the fluxes and concentrations of nutrients within the community. This knowledge is a prerequisite for rational control and intervention in microbial communities. Therefore, the inference of the community structure from experimental data is a major current challenge. We will argue that this inference problem requires mathematical models that can integrate heterogeneous experimental data with existing knowledge. We propose that two types of models are needed. Firstly, mathematical models that integrate existing genomic, physiological, and physicochemical information with metagenomics data so as to maximize information content and predictive power. This can be achieved with the use of constraint-based genome-scale stoichiometric modeling of community metabolism which is ideally suited for this purpose. Next, we propose a simpler coarse-grained model, which is tailored to solve the inference problem from the experimental data. This model unambiguously relate to the more detailed genome-scale stoichiometric models which act as heterogeneous data integrators. The simpler inference models are, in our opinion, key to understanding microbial ecosystems, yet until now, have received remarkably little attention. This has led to the situation where the modeling of microbial communities, using only genome-scale models is currently more a computational, theoretical exercise than a method useful to the experimentalist. PMID:25852671

  12. Evaluation of probabilistic and logical inference for a SNP annotation system Terry H. Shen a,*, Peter Tarczy-Hornoch a,b,c

    E-print Network

    Washington at Seattle, University of

    Evaluation of probabilistic and logical inference for a SNP annotation system Terry H. Shen a nucleotide polymorphisms (SNPs) Federated data integration SNP annotation system Logical inference Probabilistic inference SNP evaluation a b s t r a c t Genome wide association studies (GWAS) are an important

  13. Free-energy inference from partial work measurements in small systems

    PubMed Central

    Ribezzi-Crivellari, Marco; Ritort, Felix

    2014-01-01

    Fluctuation relations (FRs) are among the few existing general results in nonequilibrium systems. Their verification requires the measurement of the total work performed on a system. Nevertheless in many cases only a partial measurement of the work is possible. Here we consider FRs in dual-trap optical tweezers where two different forces (one per trap) are measured. With this setup we perform pulling experiments on single molecules by moving one trap relative to the other. We demonstrate that work should be measured using the force exerted by the trap that is moved. The force that is measured in the trap at rest fails to provide the full dissipation in the system, leading to a (incorrect) work definition that does not satisfy the FR. The implications to single-molecule experiments and free-energy measurements are discussed. In the case of symmetric setups a second work definition, based on differential force measurements, is introduced. This definition is best suited to measure free energies as it shows faster convergence of estimators. We discuss measurements using the (incorrect) work definition as an example of partial work measurement. We show how to infer the full work distribution from the partial one via the FR. The inference process does also yield quantitative information, e.g., the hydrodynamic drag on the dumbbell. Results are also obtained for asymmetric dual-trap setups. We suggest that this kind of inference could represent a previously unidentified and general application of FRs to extract information about irreversible processes in small systems. PMID:25099353

  14. A Weather Forecasting System using concept of Soft Computing: a new approach

    NASA Astrophysics Data System (ADS)

    Sharma, A.; Datta, U.

    2007-07-01

    Weather forecasting and warnings are the major services provided by the meteorological profession. Many government and private agencies are working on its behavior but still it is challenging and incomplete. We propose a new technique to construct the learning set of images, which represents the actual data. We relate this data to the forthcoming weather events based on their previous records and history or whatever recognized by our system. Our work presents a new approach where the data explanation is performed with soft computing technique i.e. a neuro-fuzzy system is used to predict meteorological position on the basis of measurements by a weather system designed by us. This model can help us in making forecast of different weather conditions like rain and thunderstorm, sunshine and dry day, and perhaps a cloudy weather i.e. purpose of this model is to represent a warning system for likely adverse conditions. Our model is designed with a concept of Adaptive Forecasting Model(AFD) in the mind. The simple meaning of this term is that our model has potential to capture the complex relationships between many factors that contribute to certain weather conditions. The results are compared with actual working of meteorological department and these results confirm that our model which is based on soft computing have the potential for successful application to weather forecasting. We considered atmospheric pressure a primary key parameter and atmospheric temperature and relative humidity secondary type. We will, however, examine temperature as signature of weather conditions in some typical cases where we could observe the effect of temperature. As an example, the estimations produced by the proposed methodology were applied on different weather forecasting data provided by the Gwalior meteorology center to make the result more practical and believable. The forecasts are always current are based on neuro-fuzzy systems that utilize the concept of soft computing. Real time processing of weather data indicate that the neuro-fuzzy based weather forecast have shown improvement not only over guidance forecasts from numerical models, but over official local weather service forecasts as well.

  15. The early solar system abundance of /sup 244/Pu as inferred from the St. Severin chondrite

    SciTech Connect

    Hudson, G.B.; Kennedy, B.M.; Podosek, F.A.; Hohenberg, C.M.

    1987-03-01

    We describe the analysis of Xe released in stepwise heating of neutron-irradiated samples of the St. Severin chondrite. This analysis indicates that at the time of formation of most chondritic meteorites, approximately 4.56 x 10/sup 9/ years ago, the atomic ratio of /sup 244/Pu//sup 238/U was 0.0068 +- 0.0010 in chondritic meteorites. We believe that this value is more reliable than that inferred from earlier analyses of St. Severin. We feel that this value is currently the best available estimate for the early solar system abundance of /sup 244/Pu. 42 refs., 2 tabs.

  16. High-resolution space-time rainfall analysis using integrated ANN inference systems

    NASA Astrophysics Data System (ADS)

    Langella, G.; Basile, A.; Bonfante, A.; Terribile, F.

    2010-06-01

    SummarySoil-vegetation-atmosphere transfer (SVAT) models require high-resolution precipitation data which often are not available at the landscape scale where spatial-sparse data are the usual setting. In such framework we compared various neural-based inference systems to recognize the most performing structures for gaining reliable rainfall predictions at high spatiotemporal resolution (20 × 20 m by 10 days). More technologies are combined with neurocomputing having as objective model comparison in case of limited data. The feasibility of modeling very small datasets by means of the bootstrap aggregating technique is explored. Furthermore two aggregation methods (i.e. average or principal component regression) and two methods for selecting the best artificial neural network components (based on genetic algorithms or on percentiles of mean square error) are investigated. The core architecture is a three-layer, feed-forward, fully interconnected artificial neural network (ANN) with topology 11:11:1 and Levenberg-Marquardt training algorithm. Three inference systems are developed using this type of ANN as a building block: (a) a single network (SN), (b) a large, bootstrapped ensemble of ANNs (BAGNET), and (c) a smaller ensemble of ANNs (sBN) selected for their strong performance. According to the structure of simulation signals, these frameworks make inferences in temporal domain (e.g. a 1 year series at an unknown location), in spatial domain (e.g. a 10-days map of spatial distribution of rainfall), or in between (e.g. a 1 year stack of rainfall maps). A method to improve the spatial maps is accomplished. It uses a geostatistical filter based on an indicator variable describing the distribution of non-rainy observations in space. A validation procedure is performed to pursue the best technology mix for addressing inferences in any case study setting. Results show that in case of very few data (Cilento region) mixed technologies (e.g. boostrap, principal component regression, and genetic algorithms) are required to keep the validation error comparable to that of the single networks calibrated on more data (Campania region).

  17. A polynomial chaos ensemble hydrologic prediction system for efficient parameter inference and robust uncertainty assessment

    NASA Astrophysics Data System (ADS)

    Wang, S.; Huang, G. H.; Baetz, B. W.; Huang, W.

    2015-11-01

    This paper presents a polynomial chaos ensemble hydrologic prediction system (PCEHPS) for an efficient and robust uncertainty assessment of model parameters and predictions, in which possibilistic reasoning is infused into probabilistic parameter inference with simultaneous consideration of randomness and fuzziness. The PCEHPS is developed through a two-stage factorial polynomial chaos expansion (PCE) framework, which consists of an ensemble of PCEs to approximate the behavior of the hydrologic model, significantly speeding up the exhaustive sampling of the parameter space. Multiple hypothesis testing is then conducted to construct an ensemble of reduced-dimensionality PCEs with only the most influential terms, which is meaningful for achieving uncertainty reduction and further acceleration of parameter inference. The PCEHPS is applied to the Xiangxi River watershed in China to demonstrate its validity and applicability. A detailed comparison between the HYMOD hydrologic model, the ensemble of PCEs, and the ensemble of reduced PCEs is performed in terms of accuracy and efficiency. Results reveal temporal and spatial variations in parameter sensitivities due to the dynamic behavior of hydrologic systems, and the effects (magnitude and direction) of parametric interactions depending on different hydrological metrics. The case study demonstrates that the PCEHPS is capable not only of capturing both expert knowledge and probabilistic information in the calibration process, but also of implementing an acceleration of more than 10 times faster than the hydrologic model without compromising the predictive accuracy.

  18. A Context-Aware Interactive Health Care System Based on Ontology and Fuzzy Inference.

    PubMed

    Chiang, Tzu-Chiang; Liang, Wen-Hua

    2015-09-01

    In the present society, most families are double-income families, and as the long-term care is seriously short of manpower, it contributes to the rapid development of tele-homecare equipment, and the smart home care system gradually emerges, which assists the elderly or patients with chronic diseases in daily life. This study aims at interaction between persons under care and the system in various living spaces, as based on motion-sensing interaction, and the context-aware smart home care system is proposed. The system stores the required contexts in knowledge ontology, including the physiological information and environmental information of the person under care, as the database of decision. The motion-sensing device enables the person under care to interact with the system through gestures. By the inference mechanism of fuzzy theory, the system can offer advice and rapidly execute service, thus, implementing the EHA. In addition, the system is integrated with the functions of smart phone, tablet PC, and PC, in order that users can implement remote operation and share information regarding the person under care. The health care system constructed in this study enables the decision making system to probe into the health risk of each person under care; then, from the view of preventive medicine, and through a composing system and simulation experimentation, tracks the physiological trend of the person under care, and provides early warning service, thus, promoting smart home care. PMID:26265236

  19. GenSo-EWS: a novel neural-fuzzy based early warning system for predicting bank failures.

    PubMed

    Tung, W L; Quek, C; Cheng, P

    2004-05-01

    Bank failure prediction is an important issue for the regulators of the banking industries. The collapse and failure of a bank could trigger an adverse financial repercussion and generate negative impacts such as a massive bail out cost for the failing bank and loss of confidence from the investors and depositors. Very often, bank failures are due to financial distress. Hence, it is desirable to have an early warning system (EWS) that identifies potential bank failure or high-risk banks through the traits of financial distress. Various traditional statistical models have been employed to study bank failures [J Finance 1 (1975) 21; J Banking Finance 1 (1977) 249; J Banking Finance 10 (1986) 511; J Banking Finance 19 (1995) 1073]. However, these models do not have the capability to identify the characteristics of financial distress and thus function as black boxes. This paper proposes the use of a new neural fuzzy system [Foundations of neuro-fuzzy systems, 1997], namely the Generic Self-organising Fuzzy Neural Network (GenSoFNN) [IEEE Trans Neural Networks 13 (2002c) 1075] based on the compositional rule of inference (CRI) [Commun ACM 37 (1975) 77], as an alternative to predict banking failure. The CRI based GenSoFNN neural fuzzy network, henceforth denoted as GenSoFNN-CRI(S), functions as an EWS and is able to identify the inherent traits of financial distress based on financial covariates (features) derived from publicly available financial statements. The interaction between the selected features is captured in the form of highly intuitive IF-THEN fuzzy rules. Such easily comprehensible rules provide insights into the possible characteristics of financial distress and form the knowledge base for a highly desired EWS that aids bank regulation. The performance of the GenSoFNN-CRI(S) network is subsequently benchmarked against that of the Cox's proportional hazards model [J Banking Finance 10 (1986) 511; J Banking Finance 19 (1995) 1073], the multi-layered perceptron (MLP) and the modified cerebellar model articulation controller (MCMAC) [IEEE Trans Syst Man Cybern: Part B 30 (2000) 491] in predicting bank failures based on a population of 3635 US banks observed over a 21 years period. Three sets of experiments are performed-bank failure classification based on the last available financial record and prediction using financial records one and two years prior to the last available financial statements. The performance of the GenSoFNN-CRI(S) network as a bank failure classification and EWS is encouraging. PMID:15109685

  20. Design considerations for flight test of a fault inferring nonlinear detection system algorithm for avionics sensors

    NASA Technical Reports Server (NTRS)

    Caglayan, A. K.; Godiwala, P. M.; Morrell, F. R.

    1986-01-01

    The modifications to the design of a fault inferring nonlinear detection system (FINDS) algorithm to accommodate flight computer constraints and the resulting impact on the algorithm performance are summarized. An overview of the flight data-driven FINDS algorithm is presented. This is followed by a brief analysis of the effects of modifications to the algorithm on program size and execution speed. Significant improvements in estimation performance for the aircraft states and normal operating sensor biases, which have resulted from improved noise design parameters and a new steady-state wind model, are documented. The aircraft state and sensor bias estimation performances of the algorithm's extended Kalman filter are presented as a function of update frequency of the piecewise constant filter gains. The results of a new detection system strategy and failure detection performance, as a function of gain update frequency, are also presented.

  1. Design considerations for flight test of a fault inferring nonlinear detection system algorithm for avionics sensors

    NASA Technical Reports Server (NTRS)

    Caglayan, A. K.; Godiwala, P. M.; Morrell, F. R.

    1986-01-01

    This paper summarizes the modifications made to the design of a fault inferring nonlinear detection system (FINDS) algorithm to accommodate flight computer constraints and the resulting impact on the algorithm performance. An overview of the flight data-driven FINDS algorithm is presented. This is followed by a brief analysis of the effects of modifications to the algorithm on program size and execution speed. Significant improvements in estimation performance for the aircraft states and normal operating sensor biases, which have resulted from improved noise design parameters and a new steady-state wind model, are documented. The aircraft state and sensor bias estimation performances of the algorithm's extended Kalman filter are presented as a function of update frequency of the piecewise constant filter gains. The results of a new detection system strategy and failure detection performance, as a function of an update frequency, are also presented.

  2. Inference of disease-related molecular logic from systems-based microarray analysis.

    PubMed

    Varadan, Vinay; Anastassiou, Dimitris

    2006-06-16

    Computational analysis of gene expression data from microarrays has been useful for medical diagnosis and prognosis. The ability to analyze such data at the level of biological modules, rather than individual genes, has been recognized as important for improving our understanding of disease-related pathways. It has proved difficult, however, to infer pathways from microarray data by deriving modules of multiple synergistically interrelated genes, rather than individual genes. Here we propose a systems-based approach called Entropy Minimization and Boolean Parsimony (EMBP) that identifies, directly from gene expression data, modules of genes that are jointly associated with disease. Furthermore, the technique provides insight into the underlying biomolecular logic by inferring a logic function connecting the joint expression levels in a gene module with the outcome of disease. Coupled with biological knowledge, this information can be useful for identifying disease-related pathways, suggesting potential therapeutic approaches for interfering with the functions of such pathways. We present an example providing such gene modules associated with prostate cancer from publicly available gene expression data, and we successfully validate the results on additional independently derived data. Our results indicate a link between prostate cancer and cellular damage from oxidative stress combined with inhibition of apoptotic mechanisms normally triggered by such damage. PMID:16789819

  3. Portable inference engine: An extended CLIPS for real-time production systems

    NASA Technical Reports Server (NTRS)

    Le, Thach; Homeier, Peter

    1988-01-01

    The present C-Language Integrated Production System (CLIPS) architecture has not been optimized to deal with the constraints of real-time production systems. Matching in CLIPS is based on the Rete Net algorithm, whose assumption of working memory stability might fail to be satisfied in a system subject to real-time dataflow. Further, the CLIPS forward-chaining control mechanism with a predefined conflict resultion strategy may not effectively focus the system's attention on situation-dependent current priorties, or appropriately address different kinds of knowledge which might appear in a given application. Portable Inference Engine (PIE) is a production system architecture based on CLIPS which attempts to create a more general tool while addressing the problems of real-time expert systems. Features of the PIE design include a modular knowledge base, a modified Rete Net algorithm, a bi-directional control strategy, and multiple user-defined conflict resolution strategies. Problems associated with real-time applications are analyzed and an explanation is given for how the PIE architecture addresses these problems.

  4. Grain Size Estimation of Superalloy Inconel 718 After Upset Forging by a Fuzzy Inference System

    NASA Astrophysics Data System (ADS)

    Toro, Luis; Cavazos, Alberto; Colás, Rafael

    2009-12-01

    A fuzzy logic inference system was designed to predict the grain size of Inconel 718 alloy after upset forging. The system takes as input the original grain size, temperature, and reduction rate at forging and predicts the final grain size at room temperature. It is assumed that the system takes into account the effects that the heterogeneity of deformation and grain growth exerts in this particular material. Experimental trials were conducted in a factory that relies on upset forging to produce preforms for ring rolling. The grain size was reported as ASTM number, as this value is used on site. A first attempt was carried out using a series of 15 empirically based set of rules; the estimation error with these was above two ASTM numbers; which is considered to be very high. The system was modified and expanded to take into account 28 rules; the estimation error of this new system resulted to be close to one ASTM number, which is considered to be adequate for the prediction.

  5. Int. J. Modelling, Identification and Control, Vol. 1, No. 2, 2006 Copyright 2006 Inderscience Enterprises Ltd.

    E-print Network

    Zhang, YuMing

    penetration control is needed to assure the weld quality (Pietrzak and Packer, 1994). To this end, sufficient Enterprises Ltd. 126 Vision-based neuro-fuzzy control of weld penetration in gas tungsten arc welding of thin a vision-based neuro-fuzzy system to control the weld joint penetration in Gas Tungsten Arc Welding (GTAW

  6. Bayesian inference of interaction properties of noisy dynamical systems with time-varying coupling: capabilities and limitations

    NASA Astrophysics Data System (ADS)

    Wilting, Jens; Lehnertz, Klaus

    2015-08-01

    We investigate a recently published analysis framework based on Bayesian inference for the time-resolved characterization of interaction properties of noisy, coupled dynamical systems. It promises wide applicability and a better time resolution than well-established methods. At the example of representative model systems, we show that the analysis framework has the same weaknesses as previous methods, particularly when investigating interacting, structurally different non-linear oscillators. We also inspect the tracking of time-varying interaction properties and propose a further modification of the algorithm, which improves the reliability of obtained results. We exemplarily investigate the suitability of this algorithm to infer strength and direction of interactions between various regions of the human brain during an epileptic seizure. Within the limitations of the applicability of this analysis tool, we show that the modified algorithm indeed allows a better time resolution through Bayesian inference when compared to previous methods based on least square fits.

  7. Inference in `poor` languages

    SciTech Connect

    Petrov, S.

    1996-10-01

    Languages with a solvable implication problem but without complete and consistent systems of inference rules (`poor` languages) are considered. The problem of existence of finite complete and consistent inference rule system for a ``poor`` language is stated independently of the language or rules syntax. Several properties of the problem arc proved. An application of results to the language of join dependencies is given.

  8. Bayesian Model Comparison and Parameter Inference in Systems Biology Using Nested Sampling

    PubMed Central

    Pullen, Nick; Morris, Richard J.

    2014-01-01

    Inferring parameters for models of biological processes is a current challenge in systems biology, as is the related problem of comparing competing models that explain the data. In this work we apply Skilling's nested sampling to address both of these problems. Nested sampling is a Bayesian method for exploring parameter space that transforms a multi-dimensional integral to a 1D integration over likelihood space. This approach focusses on the computation of the marginal likelihood or evidence. The ratio of evidences of different models leads to the Bayes factor, which can be used for model comparison. We demonstrate how nested sampling can be used to reverse-engineer a system's behaviour whilst accounting for the uncertainty in the results. The effect of missing initial conditions of the variables as well as unknown parameters is investigated. We show how the evidence and the model ranking can change as a function of the available data. Furthermore, the addition of data from extra variables of the system can deliver more information for model comparison than increasing the data from one variable, thus providing a basis for experimental design. PMID:24523891

  9. Performance evaluation of the machine learning algorithms used in inference mechanism of a medical decision support system.

    PubMed

    Bal, Mert; Amasyali, M Fatih; Sever, Hayri; Kose, Guven; Demirhan, Ayse

    2014-01-01

    The importance of the decision support systems is increasingly supporting the decision making process in cases of uncertainty and the lack of information and they are widely used in various fields like engineering, finance, medicine, and so forth, Medical decision support systems help the healthcare personnel to select optimal method during the treatment of the patients. Decision support systems are intelligent software systems that support decision makers on their decisions. The design of decision support systems consists of four main subjects called inference mechanism, knowledge-base, explanation module, and active memory. Inference mechanism constitutes the basis of decision support systems. There are various methods that can be used in these mechanisms approaches. Some of these methods are decision trees, artificial neural networks, statistical methods, rule-based methods, and so forth. In decision support systems, those methods can be used separately or a hybrid system, and also combination of those methods. In this study, synthetic data with 10, 100, 1000, and 2000 records have been produced to reflect the probabilities on the ALARM network. The accuracy of 11 machine learning methods for the inference mechanism of medical decision support system is compared on various data sets. PMID:25295291

  10. Adaptive network based on fuzzy inference system for equilibrated urea concentration prediction.

    PubMed

    Azar, Ahmad Taher

    2013-09-01

    Post-dialysis urea rebound (PDUR) has been attributed mostly to redistribution of urea from different compartments, which is determined by variations in regional blood flows and transcellular urea mass transfer coefficients. PDUR occurs after 30-90min of short or standard hemodialysis (HD) sessions and after 60min in long 8-h HD sessions, which is inconvenient. This paper presents adaptive network based on fuzzy inference system (ANFIS) for predicting intradialytic (Cint) and post-dialysis urea concentrations (Cpost) in order to predict the equilibrated (Ceq) urea concentrations without any blood sampling from dialysis patients. The accuracy of the developed system was prospectively compared with other traditional methods for predicting equilibrated urea (Ceq), post dialysis urea rebound (PDUR) and equilibrated dialysis dose (eKt/V). This comparison is done based on root mean squares error (RMSE), normalized mean square error (NRMSE), and mean absolute percentage error (MAPE). The ANFIS predictor for Ceq achieved mean RMSE values of 0.3654 and 0.4920 for training and testing, respectively. The statistical analysis demonstrated that there is no statistically significant difference found between the predicted and the measured values. The percentage of MAE and RMSE for testing phase is 0.63% and 0.96%, respectively. PMID:23806679

  11. Feedback control system based on a remote operated PID controller implemented using mbed NXP LPC1768 development board

    NASA Astrophysics Data System (ADS)

    Pricop, Emil; Zamfir, Florin; Paraschiv, Nicolae

    2015-11-01

    Process control is a challenging research topic for both academia and industry for a long time. Controllers evolved from the classical SISO approach to modern fuzzy or neuro-fuzzy embedded devices with networking capabilities, however PID algorithms are still used in the most industrial control loops. In this paper, we focus on the implementation of a PID controller using mbed NXP LPC1768 development board. This board integrates a powerful ARM Cortex- M3 core and has networking capabilities. The implemented controller can be remotely operated by using an Internet connection and a standard Web browser. The main advantages of the proposed embedded system are customizability, easy operation and very low power consumption. The experimental results obtained by using a simulated process are analysed and shows that the implementation can be done with success in industrial applications.

  12. A Fuzzy Inference System for Closed-Loop Deep Brain Stimulation in Parkinson's Disease.

    PubMed

    Camara, Carmen; Warwick, Kevin; Bruña, Ricardo; Aziz, Tipu; del Pozo, Francisco; Maestú, Fernando

    2015-11-01

    Parkinsons disease is a complex neurodegenerative disorder for which patients present many symptoms, tremor being the main one. In advanced stages of the disease, Deep Brain Stimulation is a generalized therapy which can significantly improve the motor symptoms. However despite its beneficial effects on treating the symptomatology, the technique can be improved. One of its main limitations is that the parameters are fixed, and the stimulation is provided uninterruptedly, not taking into account any fluctuation in the patients state. A closed-loop system which provides stimulation by demand would adjust the stimulation to the variations in the state of the patient, stimulating only when it is necessary. It would not only perform a more intelligent stimulation, capable of adapting to the changes in real time, but also extending the devices battery life, thereby avoiding surgical interventions. In this work we design a tool that learns to recognize the principal symptom of Parkinsons disease and particularly the tremor. The goal of the designed system is to detect the moments the patient is suffering from a tremor episode and consequently to decide whether stimulation is needed or not. For that, local field potentials were recorded in the subthalamic nucleus of ten Parkinsonian patients, who were diagnosed with tremor-dominant Parkinsons disease and who underwent surgery for the implantation of a neurostimulator. Electromyographic activity in the forearm was simultaneously recorded, and the relation between both signals was evaluated using two different synchronization measures. The results of evaluating the synchronization indexes on each moment represent the inputs to the designed system. Finally, a fuzzy inference system was applied with the goal of identifying tremor episodes. Results are favourable, reaching accuracies of higher 98.7% in 70% of the patients. PMID:26385550

  13. Inferring the Architectures of Planetary Systems from Kepler Results with SysSim

    NASA Astrophysics Data System (ADS)

    Ford, Eric

    NASA's Kepler Mission is designed to gather statistical information about planets around other stars (exoplanets). Due to its unprecedented precision, Kepler has revolutionized the exoplanet community providing by far the largest homogeneous exoplanet dataset, with over 2300 planet candidates already identified in the first 19 months of data (Batalha et al. 2012, hereafter B12). Even more exciting is Kepler's new discovery of "multi-transiting systems" or stars with more than one transiting planet. B12 identified over 350 multi-transiting systems containing nearly 900 high-probability candidate planets (Lissauer et al. 2012). These multi-transiting systems are the most information-rich planetary systems outside our own solar system because they offer both the detailed physical characterization uniquely available from transiting planets (Winn 2010) and the ability to apply the tools of multi- planetary orbital dynamics (Ragozzine & Holman 2010, Lissauer, Ragozzine et al. 2011, hereafter LR+11). Within the funding period, publicly-available Kepler observations will triple in duration, yielding hundreds of new planets in multi-transiting systems and providing first insights into the frequency of Earth-size planets and solar system analogs. As with all astronomical surveys, Kepler data must be debiased in order to understand the true properties of the underlying population. Several studies have addressed the geometrical and detection biases to perform statistical analyses of Kepler results on a planet-by-planet basis (e.g., Borucki et al. 2011, Howard et al. 2011, Youdin 2011, Catanzarite & Shao 2011, Traub 2011). Other authors have analyzed specific multi- transiting systems to measure physical and orbital properties that will inform planet formation theories (e.g., Lissauer et al. 2011a, Migaszewski et al. 2012). However, there is a critical gap between these two techniques: a method for debiasing the Kepler planet data while accounting for multi-planet systems. Without a method to interpret and debias the Kepler planet candidates on a system-by- system basis, it is not possible to rigorously address critical NASA-relevant science questions like: 1) What fraction of stars have planets? What fraction of stars have solar system analogs? 2) What is the planetary system environment of potentially habitable planets? 3) What is the expected yield of future NASA exoplanet missions? 4) Are there different populations of planetary systems? What are their architectures? and many other valuable questions that are critical for understanding the origins of solar systems. To fill this critical gap, we have developed the Planetary System Simulator or SysSim, which empirically determines the underlying debiased distribution of planetary properties (e.g., planet size, orbital period, etc.) and planetary system architecture (e.g., relative inclinations, number of planets per star) simultaneously. The earliest version of SysSim measured the exoplanetary inclination distribution for the first time, a finding of major consequence for planet formation theorists (LR+11). We propose to extend SysSim to include new planetary architecture parameters and new observational constraints from the growing Kepler dataset. We will produce rigorously-debiased exoplanetary populations that will improve the understanding of the frequency, architecture, and origins of planetary systems. Our team is uniquely qualified to fulfill these tasks based on our extensive experience with Kepler data, metadata, multi-transiting systems, statistical inference, and previous work (LR+11, B12, Ragozzine & Holman 2010).

  14. Regularized EM algorithm for sparse parameter estimation in nonlinear dynamic systems with application to gene regulatory network inference

    PubMed Central

    2014-01-01

    Parameter estimation in dynamic systems finds applications in various disciplines, including system biology. The well-known expectation-maximization (EM) algorithm is a popular method and has been widely used to solve system identification and parameter estimation problems. However, the conventional EM algorithm cannot exploit the sparsity. On the other hand, in gene regulatory network inference problems, the parameters to be estimated often exhibit sparse structure. In this paper, a regularized expectation-maximization (rEM) algorithm for sparse parameter estimation in nonlinear dynamic systems is proposed that is based on the maximum a posteriori (MAP) estimation and can incorporate the sparse prior. The expectation step involves the forward Gaussian approximation filtering and the backward Gaussian approximation smoothing. The maximization step employs a re-weighted iterative thresholding method. The proposed algorithm is then applied to gene regulatory network inference. Results based on both synthetic and real data show the effectiveness of the proposed algorithm. PMID:24708632

  15. Statistical inference on the reliability performance index for electric power generation systems

    SciTech Connect

    Sahinoglu, M.

    1981-01-01

    A primary objective of this research is to analytically develop a probability density function for the Loss of Load, a widely used index in power systems reliability evaluation. The equations to compute the parameters of this distribution for any given load cycle are derived. The forced outage rate (F.O.R.) for a generating unit is instrumental in the computation of reliability indices. This research also suggests a method for obtaining a statistically consistent estimator of F.O.R. using a decision theoretic approach. In order to develop the theoretical structure for the problem stated, classical and decision theoretic (Bayesian) statistical inferences are used as major tools along with the univariate and multivariate asymptotic theory. Consequently, an approximate numerical multiple integration scheme is employed to compute the parameters of the asymptotic probability density function. The author believes that this statistical approach offers a more realistic alternative to the conventional calculation of an averaged value for the Loss of Load index where deterministic outage data are used.

  16. Prediction of Missing Flow Records Using Multilayer Perceptron and Coactive Neurofuzzy Inference System

    PubMed Central

    Tfwala, Samkele S.; Wang, Yu-Min; Lin, Yu-Chieh

    2013-01-01

    Hydrological data are often missing due to natural disasters, improper operation, limited equipment life, and other factors, which limit hydrological analysis. Therefore, missing data recovery is an essential process in hydrology. This paper investigates the accuracy of artificial neural networks (ANN) in estimating missing flow records. The purpose is to develop and apply neural networks models to estimate missing flow records in a station when data from adjacent stations is available. Multilayer perceptron neural networks model (MLP) and coactive neurofuzzy inference system model (CANFISM) are used to estimate daily flow records for Li-Lin station using daily flow data for the period 1997 to 2009 from three adjacent stations (Nan-Feng, Lao-Nung and San-Lin) in southern Taiwan. The performance of MLP is slightly better than CANFISM, having R2 of 0.98 and 0.97, respectively. We conclude that accurate estimations of missing flow records under the complex hydrological conditions of Taiwan could be attained by intelligent methods such as MLP and CANFISM. PMID:24453876

  17. User's guide to the Fault Inferring Nonlinear Detection System (FINDS) computer program

    NASA Technical Reports Server (NTRS)

    Caglayan, A. K.; Godiwala, P. M.; Satz, H. S.

    1988-01-01

    Described are the operation and internal structure of the computer program FINDS (Fault Inferring Nonlinear Detection System). The FINDS algorithm is designed to provide reliable estimates for aircraft position, velocity, attitude, and horizontal winds to be used for guidance and control laws in the presence of possible failures in the avionics sensors. The FINDS algorithm was developed with the use of a digital simulation of a commercial transport aircraft and tested with flight recorded data. The algorithm was then modified to meet the size constraints and real-time execution requirements on a flight computer. For the real-time operation, a multi-rate implementation of the FINDS algorithm has been partitioned to execute on a dual parallel processor configuration: one based on the translational dynamics and the other on the rotational kinematics. The report presents an overview of the FINDS algorithm, the implemented equations, the flow charts for the key subprograms, the input and output files, program variable indexing convention, subprogram descriptions, and the common block descriptions used in the program.

  18. Application of Bayesian inference to the study of hierarchical organization in self-organized complex adaptive systems

    NASA Astrophysics Data System (ADS)

    Knuth, K. H.

    2001-05-01

    We consider the application of Bayesian inference to the study of self-organized structures in complex adaptive systems. In particular, we examine the distribution of elements, agents, or processes in systems dominated by hierarchical structure. We demonstrate that results obtained by Caianiello [1] on Hierarchical Modular Systems (HMS) can be found by applying Jaynes' Principle of Group Invariance [2] to a few key assumptions about our knowledge of hierarchical organization. Subsequent application of the Principle of Maximum Entropy allows inferences to be made about specific systems. The utility of the Bayesian method is considered by examining both successes and failures of the hierarchical model. We discuss how Caianiello's original statements suffer from the Mind Projection Fallacy [3] and we restate his assumptions thus widening the applicability of the HMS model. The relationship between inference and statistical physics, described by Jaynes [4], is reiterated with the expectation that this realization will aid the field of complex systems research by moving away from often inappropriate direct application of statistical mechanics to a more encompassing inferential methodology.

  19. Information Warfare-Worthy Jamming Attack Detection Mechanism for Wireless Sensor Networks Using a Fuzzy Inference System

    PubMed Central

    Misra, Sudip; Singh, Ranjit; Rohith Mohan, S. V.

    2010-01-01

    The proposed mechanism for jamming attack detection for wireless sensor networks is novel in three respects: firstly, it upgrades the jammer to include versatile military jammers; secondly, it graduates from the existing node-centric detection system to the network-centric system making it robust and economical at the nodes, and thirdly, it tackles the problem through fuzzy inference system, as the decision regarding intensity of jamming is seldom crisp. The system with its high robustness, ability to grade nodes with jamming indices, and its true-detection rate as high as 99.8%, is worthy of consideration for information warfare defense purposes. PMID:22319307

  20. Physical connectivity in the Mesoamerican Barrier Reef System inferred from 9 years of ocean color observations

    NASA Astrophysics Data System (ADS)

    Soto, I.; Andréfouët, S.; Hu, C.; Muller-Karger, F. E.; Wall, C. C.; Sheng, J.; Hatcher, B. G.

    2009-06-01

    Ocean color images acquired from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) from 1998 to 2006 were used to examine the patterns of physical connectivity between land and reefs, and among reefs in the Mesoamerican Barrier Reef System (MBRS) in the northwestern Caribbean Sea. Connectivity was inferred by tracking surface water features in weekly climatologies and a time series of weekly mean chlorophyll- a concentrations derived from satellite imagery. Frequency of spatial connections between 17 pre-defined, geomorphological domains that include the major reefs in the MBRS and river deltas in Honduras and Nicaragua were recorded and tabulated as percentage of connections. The 9-year time series of 466 weekly mean images portrays clearly the seasonal patterns of connectivity, including river plumes and transitions in the aftermath of perturbations such as hurricanes. River plumes extended offshore from the Honduras coast to the Bay Islands (Utila, Cayo Cochinos, Guanaja, and Roatán) in 70% of the weekly mean images. Belizean reefs, especially those in the southern section of the barrier reef and Glovers Atoll, were also affected by riverine discharges in every one of the 9 years. Glovers Atoll was exposed to river plumes originating in Honduras 104/466 times (22%) during this period. Plumes from eastern Honduras went as far as Banco Chinchorro and Cozumel in Mexico. Chinchorro appeared to be more frequently connected to Turneffe Atoll and Honduran rivers than with Glovers and Lighthouse Atolls, despite their geographic proximity. This new satellite data analysis provides long-term, quantitative assessments of the main pathways of connectivity in the region. The percentage of connections can be used to validate predictions made using other approaches such as numerical modeling, and provides valuable information to ecosystem-based management in coral reef provinces.

  1. Sibship reconstruction for inferring mating systems, dispersal and effective population size in headwater brook trout (Salvelinus fontinalis) populations

    USGS Publications Warehouse

    Kanno, Y.; Vokoun, J.C.; Letcher, B.H.

    2011-01-01

    Brook trout Salvelinus fontinalis populations have declined in much of the native range in eastern North America and populations are typically relegated to small headwater streams in Connecticut, USA. We used sibship reconstruction to infer mating systems, dispersal and effective population size of resident (non-anadromous) brook trout in two headwater stream channel networks in Connecticut. Brook trout were captured via backpack electrofishing using spatially continuous sampling in the two headwaters (channel network lengths of 4.4 and 7.7 km). Eight microsatellite loci were genotyped in a total of 740 individuals (80-140 mm) subsampled in a stratified random design from all 50 m-reaches in which trout were captured. Sibship reconstruction indicated that males and females were both mostly polygamous although single pair matings were also inferred. Breeder sex ratio was inferred to be nearly 1:1. Few large-sized fullsib families (>3 individuals) were inferred and the majority of individuals were inferred to have no fullsibs among those fish genotyped (family size = 1). The median stream channel distance between pairs of individuals belonging to the same large-sized fullsib families (>3 individuals) was 100 m (range: 0-1,850 m) and 250 m (range: 0-2,350 m) in the two study sites, indicating limited dispersal at least for the size class of individuals analyzed. Using a sibship assignment method, the effective population size for the two streams was estimated at 91 (95%CI: 67-123) and 210 (95%CI: 172-259), corresponding to the ratio of effective-to-census population size of 0.06 and 0.12, respectively. Both-sex polygamy, low variation in reproductive success, and a balanced sex ratio may help maintain genetic diversity of brook trout populations with small breeder sizes persisting in headwater channel networks. ?? 2010 Springer Science+Business Media B.V.

  2. Tasmeen Issue 3 

    E-print Network

    Mason, Simone; Mason, Alan; Smith, Ann

    1982-01-01

    ground source heat pump system based on ANN and ANFIS models Weijuan SUN a, Pingfang HUa,*, Fei Leia, Na Zhua, Jiangning Zhanga aHuazhong University of Science and Technology, Wuhan 430074, P. R. China Abstract: The aim of this work is to calculate... the heat pump coefficient of performance (COP) and the system COP of a ground source heat pump (GSHP) system based on an artificial neural network (ANN) model and (adaptive neuro-fuzzy inference system (ANFIS) model. In order to get the training and test...

  3. Fuzzy inference systems, ASKE, knowledge value added, and Monte Carlo risk simulation for evaluating intangible human capital investments

    NASA Astrophysics Data System (ADS)

    Mun, Johnathan; de Albuquerque, Nelson R.; Liong, Choong-Yeun; Salleh, Abdul Razak

    2013-04-01

    This paper presents the ASKE-Risk method, coupled with Fuzzy Inference Systems, and Monte Carlo Risk Simulation to measure and prioritize Individual Technical Competence of a value chain to assess changes in the human capital of a company. ASKE is an extension of the method Knowledge Value Added, which proposes the use of a proxy variable for measuring the flow of knowledge used in a key process, creating a relationship between the company's financial results and the resources used in each of the business processes.

  4. Measure of librarian pressure using fuzzy inference system: A case study in Longyan University

    NASA Astrophysics Data System (ADS)

    Huang, Jian-Jing

    2014-10-01

    As the hierarchy of middle managers in college's librarian. They may own much work pressure from their mind. How to adapt psychological problem, control the emotion and keep a good relationship in their work place, it becomes an important issue. Especially, they work in China mainland environment. How estimate the librarians work pressure and improve the quality of service in college libraries. Those are another serious issues. In this article, the authors would like discuss how can we use fuzzy inference to test librarian work pressure.

  5. Intelligent detection of hypoglycemic episodes in children with type 1 diabetes using adaptive neural-fuzzy inference system.

    PubMed

    San, Phyo Phyo; Ling, Sai Ho; Nguyen, Hung T

    2012-01-01

    Hypoglycemia, or low blood glucose, is the most common complication experienced by Type 1 diabetes mellitus (T1DM) patients. It is dangerous and can result in unconsciousness, seizures and even death. The most common physiological parameter to be effected from hypoglycemic reaction are heart rate (HR) and correct QT interval (QTc) of the electrocardiogram (ECG) signal. Based on physiological parameters, an intelligent diagnostics system, using the hybrid approach of adaptive neural fuzzy inference system (ANFIS), is developed to recognize the presence of hypoglycemia. The proposed ANFIS is characterized by adaptive neural network capabilities and the fuzzy inference system. To optimize the membership functions and adaptive network parameters, a global learning optimization algorithm called hybrid particle swarm optimization with wavelet mutation (HPSOWM) is used. For clinical study, 15 children with Type 1 diabetes volunteered for an overnight study. All the real data sets are collected from the Department of Health, Government of Western Australia. Several experiments were conducted with 5 patients each, for a training set (184 data points), a validation set (192 data points) and a testing set (153 data points), which are randomly selected. The effectiveness of the proposed detection method is found to be satisfactory by giving better sensitivity, 79.09% and acceptable specificity, 51.82%. PMID:23367375

  6. Inference, simulation, modeling, and analysis of complex networks, with special emphasis on complex networks in systems biology

    NASA Astrophysics Data System (ADS)

    Christensen, Claire Petra

    Across diverse fields ranging from physics to biology, sociology, and economics, the technological advances of the past decade have engendered an unprecedented explosion of data on highly complex systems with thousands, if not millions of interacting components. These systems exist at many scales of size and complexity, and it is becoming ever-more apparent that they are, in fact, universal, arising in every field of study. Moreover, they share fundamental properties---chief among these, that the individual interactions of their constituent parts may be well-understood, but the characteristic behaviour produced by the confluence of these interactions---by these complex networks---is unpredictable; in a nutshell, the whole is more than the sum of its parts. There is, perhaps, no better illustration of this concept than the discoveries being made regarding complex networks in the biological sciences. In particular, though the sequencing of the human genome in 2003 was a remarkable feat, scientists understand that the "cellular-level blueprints" for the human being are cellular-level parts lists, but they say nothing (explicitly) about cellular-level processes. The challenge of modern molecular biology is to understand these processes in terms of the networks of parts---in terms of the interactions among proteins, enzymes, genes, and metabolites---as it is these processes that ultimately differentiate animate from inanimate, giving rise to life! It is the goal of systems biology---an umbrella field encapsulating everything from molecular biology to epidemiology in social systems---to understand processes in terms of fundamental networks of core biological parts, be they proteins or people. By virtue of the fact that there are literally countless complex systems, not to mention tools and techniques used to infer, simulate, analyze, and model these systems, it is impossible to give a truly comprehensive account of the history and study of complex systems. The author's own publications have contributed network inference, simulation, modeling, and analysis methods to the much larger body of work in systems biology, and indeed, in network science. The aim of this thesis is therefore twofold: to present this original work in the historical context of network science, but also to provide sufficient review and reference regarding complex systems (with an emphasis on complex networks in systems biology) and tools and techniques for their inference, simulation, analysis, and modeling, such that the reader will be comfortable in seeking out further information on the subject. The review-like Chapters 1, 2, and 4 are intended to convey the co-evolution of network science and the slow but noticeable breakdown of boundaries between disciplines in academia as research and comparison of diverse systems has brought to light the shared properties of these systems. It is the author's hope that theses chapters impart some sense of the remarkable and rapid progress in complex systems research that has led to this unprecedented academic synergy. Chapters 3 and 5 detail the author's original work in the context of complex systems research. Chapter 3 presents the methods and results of a two-stage modeling process that generates candidate gene-regulatory networks of the bacterium B.subtilis from experimentally obtained, yet mathematically underdetermined microchip array data. These networks are then analyzed from a graph theoretical perspective, and their biological viability is critiqued by comparing the networks' graph theoretical properties to those of other biological systems. The results of topological perturbation analyses revealing commonalities in behavior at multiple levels of complexity are also presented, and are shown to be an invaluable means by which to ascertain the level of complexity to which the network inference process is robust to noise. Chapter 5 outlines a learning algorithm for the development of a realistic, evolving social network (a city) into which a disease is introduced. The results of simulations in populat

  7. Real-time estimation and detection of non-linearity in bio-signals using wireless brain-computer interface.

    PubMed

    Ganesan, S; Victoire, T Aruldoss Albert; Vijayalakshmy, G

    2014-01-01

    In this paper, the work is mainly concentrated on removing non-linear parameters to make the physiological signals more linear and reducing the complexity of the signals. This paper discusses three different types of techniques that can be successfully utilised to remove non-linear parameters in EEG and ECG. (i) Transformation technique using Discrete Walsh-Hadamard Transform (DWHT); (ii) application of fuzzy logic control and (iii) building the Adaptive Neuro-Fuzzy Inference System (ANFIS) model for fuzzy. This work has been inspired by the need to arrive at an efficient, simple, accurate and quicker method for analysis of bio-signal. PMID:24589837

  8. Artificial intelligence models for predicting iron deficiency anemia and iron serum level based on accessible laboratory data.

    PubMed

    Azarkhish, Iman; Raoufy, Mohammad Reza; Gharibzadeh, Shahriar

    2012-06-01

    Iron deficiency anemia (IDA) is the most common nutritional deficiency worldwide. Measuring serum iron is time consuming, expensive and not available in most hospitals. In this study, based on four accessible laboratory data (MCV, MCH, MCHC, Hb/RBC), we developed an artificial neural network (ANN) and an adaptive neuro-fuzzy inference system (ANFIS) to diagnose the IDA and to predict serum iron level. Our results represent that the neural network analysis is superior to ANFIS and logistic regression models in diagnosing IDA. Moreover, the results show that the ANN is likely to provide an accurate test for predicting serum iron levels with high accuracy and acceptable precision. PMID:21503744

  9. Hydrological connectivity inferred from diatom transport through the riparian-stream system

    NASA Astrophysics Data System (ADS)

    Martínez-Carreras, N.; Wetzel, C. E.; Frentress, J.; Ector, L.; McDonnell, J. J.; Hoffmann, L.; Pfister, L.

    2015-07-01

    Diatoms (Bacillariophyta) are one of the most common and diverse algal groups (ca. 200 000 species, ? 10-200 ?m, unicellular, eukaryotic). Here we investigate the potential of aerial diatoms (i.e. diatoms nearly exclusively occurring outside water bodies, in wet, moist or temporarily dry places) to infer surface hydrological connectivity between hillslope-riparian-stream (HRS) landscape units during storm runoff events. We present data from the Weierbach catchment (0.45 km2, northwestern Luxembourg) that quantify the relative abundance of aerial diatom species on hillslopes and in riparian zones (i.e. surface soils, litter, bryophytes and vegetation) and within streams (i.e. stream water, epilithon and epipelon). We tested the hypothesis that different diatom species assemblages inhabit specific moisture domains of the catchment (i.e. HRS units) and, consequently, the presence of certain species assemblages in the stream during runoff events offers the potential for recording whether there was hydrological connectivity between these domains or not. We found that a higher percentage of aerial diatom species was present in samples collected from the riparian and hillslope zones than inside the stream. However, diatoms were absent on hillslopes covered by dry litter and the quantities of diatoms (in absolute numbers) were small in the rest of hillslope samples. This limits their use for inferring hillslope-riparian zone connectivity. Our results also showed that aerial diatom abundance in the stream increased systematically during all sampled events (n = 11, 2011-2012) in response to incident precipitation and increasing discharge. This transport of aerial diatoms during events suggested a rapid connectivity between the soil surface and the stream. Diatom transport data were compared to two-component hydrograph separation, and end-member mixing analysis (EMMA) using stream water chemistry and stable isotope data. Hillslope overland flow was insignificant during most sampled events. This research suggests that diatoms were likely sourced exclusively from the riparian zone, since it was not only the largest aerial diatom reservoir, but also since soil water from the riparian zone was a major streamflow source during rainfall events under both wet and dry antecedent conditions. In comparison to other tracer methods, diatoms require taxonomy knowledge and a rather large processing time. However, they can provide unequivocal evidence of hydrological connectivity and potentially be used at larger catchment scales.

  10. RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

    SciTech Connect

    Novichkov, Pavel S.; Rodionov, Dmitry A.; Stavrovskaya, Elena D.; Novichkova, Elena S.; Kazakov, Alexey E.; Gelfand, Mikhail S.; Arkin, Adam P.; Mironov, Andrey A.; Dubchak, Inna

    2010-05-26

    RegPredict web server is designed to provide comparative genomics tools for reconstruction and analysis of microbial regulons using comparative genomics approach. The server allows the user to rapidly generate reference sets of regulons and regulatory motif profiles in a group of prokaryotic genomes. The new concept of a cluster of co-regulated orthologous operons allows the user to distribute the analysis of large regulons and to perform the comparative analysis of multiple clusters independently. Two major workflows currently implemented in RegPredict are: (i) regulon reconstruction for a known regulatory motif and (ii) ab initio inference of a novel regulon using several scenarios for the generation of starting gene sets. RegPredict provides a comprehensive collection of manually curated positional weight matrices of regulatory motifs. It is based on genomic sequences, ortholog and operon predictions from the MicrobesOnline. An interactive web interface of RegPredict integrates and presents diverse genomic and functional information about the candidate regulon members from several web resources. RegPredict is freely accessible at http://regpredict.lbl.gov.

  11. Type Inference with Bounded Quantification 

    E-print Network

    Sequeira, Dilip

    system which combines structural subtype polymorphism and predicative parametric polymorphism, and use this to extend with subtyping the type system of Laufer and Odersky for ML with type annotations. We define a complete algorithm which infers minimal...

  12. Adaptive fuzzy system for 3-D vision

    NASA Technical Reports Server (NTRS)

    Mitra, Sunanda

    1993-01-01

    An adaptive fuzzy system using the concept of the Adaptive Resonance Theory (ART) type neural network architecture and incorporating fuzzy c-means (FCM) system equations for reclassification of cluster centers was developed. The Adaptive Fuzzy Leader Clustering (AFLC) architecture is a hybrid neural-fuzzy system which learns on-line in a stable and efficient manner. The system uses a control structure similar to that found in the Adaptive Resonance Theory (ART-1) network to identify the cluster centers initially. The initial classification of an input takes place in a two stage process; a simple competitive stage and a distance metric comparison stage. The cluster prototypes are then incrementally updated by relocating the centroid positions from Fuzzy c-Means (FCM) system equations for the centroids and the membership values. The operational characteristics of AFLC and the critical parameters involved in its operation are discussed. The performance of the AFLC algorithm is presented through application of the algorithm to the Anderson Iris data, and laser-luminescent fingerprint image data. The AFLC algorithm successfully classifies features extracted from real data, discrete or continuous, indicating the potential strength of this new clustering algorithm in analyzing complex data sets. The hybrid neuro-fuzzy AFLC algorithm will enhance analysis of a number of difficult recognition and control problems involved with Tethered Satellite Systems and on-orbit space shuttle attitude controller.

  13. Coseismic and postseismic deformation due to the South Napa earthquake inferred from modeling of Global Positioning System data

    NASA Astrophysics Data System (ADS)

    Murray, J. R.; Svarc, J. L.; Pollitz, F. F.; Floyd, M.; Funning, G.; Johanson, I. A.

    2014-12-01

    Tectonic ground deformation due to the 24 August 2014 M6 South Napa earthquake was recorded by continuous GPS (CGPS) sites of the Plate Boundary Observatory, Bay Area Regional Deformation, and USGS networks. Additionally, survey-mode GPS (SGPS) measurements were carried out following the event to densify the spatial coverage and record postseismic deformation. We compare earthquake offsets estimated using two sets of time series for the same sites, one with position estimates at five minute intervals and the other at one day intervals. On average the offset magnitudes from the five-minute positions are ~70% those estimated from the daily data, demonstrating that substantial postseismic deformation occurred immediately following the coseismic slip. Fitting the daily position time series for sites within ~35 km of the epicenter with a combination of coseismic offset and a logarithmic decay that begins immediately following the event indicates that cumulative displacement from 25 August 2014 to 24 September 2014 is on average ~70% of the estimated displacement on 24 August at these sites. While earthquakes on creeping faults of the San Andreas system have often generated postseismic displacement of similar magnitude to the coseismic, the mapped trace associated with this earthquake was not known to creep. Using the coseismic offsets estimated from the five-minute solutions and a Bayesian inference approach, the most likely planar fault that passes through the epicenter and intersects the Earth's surface is vertical and strikes 155o, in good agreement with seismic moment tensor estimates. The peak GPS-inferred coseismic slip extends ~12 km northwest and up-dip of the hypocenter. Initial postseismic slip models derived from GPS data show shallow afterslip near and to the southeast of the inferred coseismic slip; the afterslip is generally shallower and southeast of the zone of aftershocks. However, the resulting GPS residuals exhibit more complex spatial patterns that are not well-fit with a simple planar geometry. Further collection and analysis of postseismic SGPS data, in combination with other geodetic observations, will help to characterize the postseismic deformation source process, its temporal evolution, and its relation to aftershocks.

  14. A hybrid conceptual-fuzzy inference streamflow modelling for the Letaba River system in South Africa

    NASA Astrophysics Data System (ADS)

    Katambara, Zacharia; Ndiritu, John G.

    There has been considerable water resources developments in South Africa and other regions in the world in order to meet the ever-increasing water demands. These developments have not been matched with a similar development of hydrological monitoring systems and hence there is inadequate data for managing the developed water resources systems. The Letaba River system ( Fig. 1) is a typical case of such a system in South Africa. The available water on this river is over-allocated and reliable daily streamflow modelling of the Letaba River that adequately incorporates the main components and processes would be an invaluable aid to optimal operation of the system. This study describes the development of a calibrated hybrid conceptual-fuzzy-logic model and explores its capability in reproducing the natural processes and human effects on the daily stream flow in the Letaba River. The model performance is considered satisfactory in view of the complexity of the system and inadequacy of relevant data. Performance in modelling streamflow improves towards the downstream and matches that of a stand-alone fuzzy-logic model. The hybrid model obtains realistic estimates of the major system components and processes including the capacities of the farm dams and storage weirs and their trajectories. This suggests that for complex data-scarce River systems, hybrid conceptual-fuzzy-logic modelling may be used for more detailed and dependable operational and planning analysis than stand-alone fuzzy modelling. Further work will include developing and testing other hybrid model configurations.

  15. TAS | A Generic Window Inference System Christoph Luth 1 and Burkhart Wol 2

    E-print Network

    Lüth, Christoph - Deutschen Forschungszentrum für Künstliche Intelligenz & Fachbereich 3

    transformational development. However, many of these systems such as CIP [3], KIDS [21] or PROSPECTRA [12] su#11, with an open system architecture capable of coping with the fast changes in technology in user interfaces groups. In [15], we have proposed an open architecture to build graphical user in- terfaces for theorem

  16. A neural network mode inference engine for the advisory system for training and safety 

    E-print Network

    Nguyen, Thinh Xuan

    1996-01-01

    To improve the safety record of the private general aviation sector, the Advisory System for Training and Safety (ASTRAS) was conceived. The ASTRAS software provides timely information to the pilot, assisting him in properly configuring the aircraft...

  17. Structures and evolution of the plumbing system of Piton de la Fournaise volcano inferred from clustering of 2007 eruptive cycle seismicity

    E-print Network

    Duputel, Zacharie

    2011 Available online 5 March 2011 Keywords: Piton de la Fournaise caldera CLVD sill volcano monitoring eruption at Miyakejima volcano, Japan (Geshi et al., 2002). On the other hand, caldera formation may alsoStructures and evolution of the plumbing system of Piton de la Fournaise volcano inferred from

  18. Magnetospheric current systems as inferred from SYM and ASY mid-latitude indices

    NASA Astrophysics Data System (ADS)

    Ganushkina, Natalia; Dubyagin, Stepan

    2015-04-01

    Separating the contributions from different current systems from point magnetic field measurements and interpreting them as belonging to one system or another is very difficult, and caution must be used when deciphering near-Earth currents from either data or modeling results. At the same time, there are other continuously measured quantities, which can provide, though indirectly, information about the dynamics of the magnetospheric current systems. The SYM-H and ASY-H indices, computed from the observations of magnetic field at low latitude ground-based stations, contain contributions from major magnetospheric current systems, such as the symmetric and asymmetric ring current, tail current, magnetopause currents and field-aligned currents. Highly distorted magnetospheric magnetic field during storm times due to disturbances in the current systems is reflected in the SYM-H and ASY-H observed variations. Using empirical magnetospheric models we study the relative contribution from different current systems to the SYM and ASY mid-latitude indices. It was found that the models can reproduce ground based mid-latitude indices rather well. The good agreement between the indices computed using magnetospheric models and real ones indicates that purely ionospheric current systems, on average, give modest contribution to these indices. The superposed epoch analysis of the indices computed using the models shows that the cross-tail current gives dominant contribution to SYM-H index during the main phase though this contribution can not be separated from FAC region 2 and partial ring current contributions since these systems are overlapped. The relative contribution from symmetric ring current to SYM-H starts to increase a bit prior or just after SYM-H minimum and attains its maximum during recovery phase. The ASY-H and ASY-D indices are controlled by interplay between three current systems which close via the ionosphere. The region 1 FAC gives the largest contribution to ASY-H and ASY-D indices during the main phase, though, region 2 FAC and partial ring current contributions are also prominent. The partial ring current is the main contributor to the ASY indices during the recovery phase. In addition, we discuss the application of these results to resolving the long-debated inconsistencies of the substorm-controlled geomagnetic storm scenario.

  19. Hydrothermal system of Central Tenerife Volcanic Complex, Canary Islands (Spain), inferred from self-potential measurements

    NASA Astrophysics Data System (ADS)

    Villasante-Marcos, Víctor; Finizola, Anthony; Barde-Cabusson, Stéphanie; López, Carmen; Di Gangi, Fabio; Levieux, Guillaume; Morin, Julie; Ricci, Tullio; Schütze, Claudia; Suski-Ricci, Barbara

    2014-05-01

    An extensive self-potential survey was carried out in the central volcanic complex of Tenerife Island (Canary Islands, Spain). A total amount of ~237 km of profiles with 20 m spacing between measurements was completed, including radial profiles extending from the summits of Teide and Pico Viejo, and circular profiles inside and around Las Cañadas caldera and the northern slopes of Teide and Pico Viejo. One of the main results of this mapping is the detection of well-developed hydrothermal systems within the edifices of Teide and Pico Viejo, and also associated with the flank satellite M. Blanca and M. Rajada volcanoes. A strong structural control of the surface manifestation of these hydrothermal systems is deduced from the data, pointing to the subdivision of Teide and Pico Viejo hydrothermal systems in three zones: summit crater, upper and lower hydrothermal systems. Self-potential maxima related to hydrothermal activity are absent from the proximal parts of the NE and NW rift zones as well as from at least two of the mafic historical eruptions (Chinyero and Siete Fuentes), indicating that long-lived hydrothermal systems have developed exclusively over relatively shallow felsic magma reservoirs. Towards Las Cañadas caldera floor and walls, the influence of the central hydrothermal systems disappears and the self-potential signal is controlled by the topography, the distance to the water table of Las Cañadas aquifer and its geometry. Nevertheless, fossil or remanent hydrothermal activity at some points along the Caldera wall, especially around the Roques de García area, is also suggested by the data. Self-potential data indicate the existence of independent groundwater systems in the three calderas of Ucanca, Guajara and Diego Hernández, with a funnel shaped negative anomaly in the Diego Hernández caldera floor related to the subsurface topography of the caldera bottom. Two other important self-potential features are detected: positive values towards the northwestern Santiago rift, possibly due to the relatively high altitude of the water-table in this area; and a linear set of minima to the west of Pico Viejo, aligned with the northwestern rift and related to meteoric water infiltration along its fracture system.

  20. Gradient Matching Methods for Computational Inference in Mechanistic Models for Systems Biology: A Review and Comparative Analysis.

    PubMed

    Macdonald, Benn; Husmeier, Dirk

    2015-01-01

    Parameter inference in mathematical models of biological pathways, expressed as coupled ordinary differential equations (ODEs), is a challenging problem in contemporary systems biology. Conventional methods involve repeatedly solving the ODEs by numerical integration, which is computationally onerous and does not scale up to complex systems. Aimed at reducing the computational costs, new concepts based on gradient matching have recently been proposed in the computational statistics and machine learning literature. In a preliminary smoothing step, the time series data are interpolated; then, in a second step, the parameters of the ODEs are optimized, so as to minimize some metric measuring the difference between the slopes of the tangents to the interpolants, and the time derivatives from the ODEs. In this way, the ODEs never have to be solved explicitly. This review provides a concise methodological overview of the current state-of-the-art methods for gradient matching in ODEs, followed by an empirical comparative evaluation based on a set of widely used and representative benchmark data. PMID:26636071

  1. Gradient Matching Methods for Computational Inference in Mechanistic Models for Systems Biology: A Review and Comparative Analysis

    PubMed Central

    Macdonald, Benn; Husmeier, Dirk

    2015-01-01

    Parameter inference in mathematical models of biological pathways, expressed as coupled ordinary differential equations (ODEs), is a challenging problem in contemporary systems biology. Conventional methods involve repeatedly solving the ODEs by numerical integration, which is computationally onerous and does not scale up to complex systems. Aimed at reducing the computational costs, new concepts based on gradient matching have recently been proposed in the computational statistics and machine learning literature. In a preliminary smoothing step, the time series data are interpolated; then, in a second step, the parameters of the ODEs are optimized, so as to minimize some metric measuring the difference between the slopes of the tangents to the interpolants, and the time derivatives from the ODEs. In this way, the ODEs never have to be solved explicitly. This review provides a concise methodological overview of the current state-of-the-art methods for gradient matching in ODEs, followed by an empirical comparative evaluation based on a set of widely used and representative benchmark data. PMID:26636071

  2. Inferring Class level Specifications for Distributed Systems Sandeep Kumar, Siau-Cheng Khoo, Abhik Roychoudhury

    E-print Network

    Roychoudhury, Abhik

    - the phone and switch objects could exhibit many snippets of behavior such as three way calling, call forwarding and call waiting. However, the exact identities of the phone/switch objects participating there have been techniques that mine specifications of such distributed systems from their execution traces

  3. Applying Logic Inference Techniques for Gaining Flexibility and Adaptivity in Tutoring Systems

    E-print Network

    Torino, Università di

    ", to the implementation of adaptive services in a web-based educational system. Our research was settled in an applicative In this article we present the most recent advancements of a research aimed at applying reasoning techniques actions techniques such as planning, temporal projection and temporal explanation. 1 Introduction

  4. FPGA-Based Fuzzy Inference System for Real-time Embedded Applications

    E-print Network

    mathematically. Real-time systems, such as robotics and washing machines, are corrupted by unstructured, noisy to control a PM motor in a washing machine. The given results demonstrate the capability of such embedded controller in washing machine applications where simplicity, reliability and stability are more important

  5. Inferring Likelihoods and Climate System Characteristics from Climate Models and Multiple

    E-print Network

    Haran, Murali

    systems. AMOC projections rely on simulations from complex climate models. One key source of uncertainty modeling, Gaussian process, computer experiments, multivariate spatial data, climate change. Short Title et al., 2005) as well as climate model simulations (Cubasch et al., 2001; Meehl et al., 2007

  6. RULE-BASED INFERENCE SYSTEM FOR PREDICTING LINER/WASTE COMPATIBILITY

    EPA Science Inventory

    Determining the chemical compatibility of a liner material for containment of wastes rests mainly on the application of expert opinion to interpret the results of short-term immersion tests. A methodology known as a production system is employed to encode such expert opinion into...

  7. Inferring population history from genealogies 

    E-print Network

    Lohse, Konrad R.

    2010-01-01

    This thesis investigates a range of genealogical approaches to making quantitative inferences about the spatial and demographic history of populations with application to two insect systems: A local radiation of high ...

  8. Inferring complex networks from time series of dynamical systems: Pitfalls, misinterpretations, and possible solutions

    NASA Astrophysics Data System (ADS)

    Bearden, Kathryn

    Interpenetrating polymer networks (IPNs), where polymer chains mechanically entangle during network formation, are of interest for their unique properties. The reaction sequence of a DGEBF epoxy/polybutadiene-dimethacrylate simultaneous IPN system was varied with differing catalysts to observe the correlation between reaction steps and physical properties. When the acrylate components were reacted first an IPN with two glass transitions and discrete phase separation was observed via scanning electron microscopy (SEM). When all components were reacted in parallel, two glass transitions were also observed but the morphology presented a single phase or a visible macro phase seperation. The IPN showed an increase in fracture toughness but a decrease in tensile strength compared to the single phase system and an epoxy control. Varying the amounts of polybutadiene-dimethacrylate in relation to the epoxy also showed a limit to the toughening effect.

  9. Phylogenetic relationships, chromosome and breeding system evolution in Turnera (Turneraceae): inferences from its sequence data.

    PubMed

    Truyens, Simon; Arbo, Maria M; Shore, Joel S

    2005-10-01

    Turnera provides a useful system for exploring two significant evolutionary phenomena-shifts in breeding system (distyly vs. homostyly) and the evolution of polyploids. To explore these, the first molecular phylogeny of Turnera was constructed using sequences of the internal transcribed spacer region (ITS) of nuclear ribosomal DNA for 37 taxa. We attempted to resolve the origins of allopolyploid species using single-strand conformation polymorphism and sequencing of homeologous copies of ITS. Two allohexaploid species possessed putative ITS homeologues (T. velutina and T. orientalis). A phylogenetic analysis to identify progenitors contributing to the origins of these polyploids was unsuccessful, possibly as a result of concerted evolution of ITS. Breeding system evolution was mapped onto the phylogeny assuming distyly to be ancestral in Turnera. Self-compatible homostyly appears to have arisen independently at least three times in Turnera; however, we were not able to determine whether there have been independent origins of homostyly among hexaploid species in series Turnera. Our phylogenetic analyses suggest that series Turnera is monophyletic. Neither series Microphyllae nor Anomalae, however, appear to be monophyletic. Future taxonomic revisions may require new circumscriptions of these latter series. PMID:21646092

  10. Taal volcanic hydrothermal system (Philippines) inferred by electromagnetic and other geophysical methods

    NASA Astrophysics Data System (ADS)

    Zlotnicki, Jacques; Toutain, Jean Paul; Sasai, Yoichi; Villacorte, Egardo; Bernard, Alain; Fauquet, Frederic; Nagao, Toshiyatsu

    2010-05-01

    On volcanoes which display hydrothermal/magmatic unrests, Electromagnetic (EM) methods can be combined with geochemical (GC) and thermal methods. The integration of these methods allows to image in detail hydrothermal systems, to find out possible scenarios of volcanic unrest, and to monitor the on-going activity with knowledge on the sources of heat, gas and fluid transfers. Since the 1990's the volcano shows recurrent periods of seismic activity, ground deformation, hydrothermal activity, and surface activity (geysers). Combined EM and GC methods noticeably contribute to map in detail the hydrothermal system and to analyse the sources of the activity: - Total magnetic field mapping evidences demagnetised zones over the two main areas forming the hydrothermal system (in the northern part of Main crater (MC)). These low magnetized areas are ascribed to thermal sources located at some hundreds metres of depth, - Self-potential surveys, delineate the contours of the fluids-heat transfer, and the northern and southern structural discontinuities enclosing the hydrothermal system, - Ground temperature gradient measurements evidence the distinctive heat transfer modes, from low fluxes related to soil temperature dominated by solar input to extremely high temperature gradients of 1200 °C m-1 or to more related to magmatic fluids. - Ground temperature and surface temperature of central acidic lake calculated by Thermal Aster imaging highlight the location of the most active ground fissures, outcrops and diffuse areas. Higher and larger anomalies are observed in the northern part of MC. A rough estimation of the thermal discharge in the northern part of the volcano gives 17 MW. - CO2 concentrations and fluxes from soil supply inform on fluids origin and on local processes operating along active fractures. Much higher carbon dioxide fluxes at MC sites confirm that the source of Taal activity is presently located in the northern part of the crater. - Heat and fluids release from the hydrothermal system delineate a general NW-SE ellipsoid in the northern part of MC and may be related to a suspected NW-SE fault along which seismicity takes place and dikes are believed to intrude triggering volcanic crises. The northern flank of the volcano is mechanically and hydro thermally reactivated during seismic crises and this sector could be subjected to a flank failure.

  11. Bayesian inference-based environmental decision support systems for oil spill response strategy selection.

    PubMed

    Davies, Andrew J; Hope, Max J

    2015-07-15

    Contingency plans are essential in guiding the response to marine oil spills. However, they are written before the pollution event occurs so must contain some degree of assumption and prediction and hence may be unsuitable for a real incident when it occurs. The use of Bayesian networks in ecology, environmental management, oil spill contingency planning and post-incident analysis is reviewed and analysed to establish their suitability for use as real-time environmental decision support systems during an oil spill response. It is demonstrated that Bayesian networks are appropriate for facilitating the re-assessment and re-validation of contingency plans following pollutant release, thus helping ensure that the optimum response strategy is adopted. This can minimise the possibility of sub-optimal response strategies causing additional environmental and socioeconomic damage beyond the original pollution event. PMID:26006775

  12. RSPOP: rough set-based pseudo outer-product fuzzy rule identification algorithm.

    PubMed

    Ang, Kai Keng; Quek, Chai

    2005-01-01

    System modeling with neuro-fuzzy systems involves two contradictory requirements: interpretability verses accuracy. The pseudo outer-product (POP) rule identification algorithm used in the family of pseudo outer-product-based fuzzy neural networks (POPFNN) suffered from an exponential increase in the number of identified fuzzy rules and computational complexity arising from high-dimensional data. This decreases the interpretability of the POPFNN in linguistic fuzzy modeling. This article proposes a novel rough set-based pseudo outer-product (RSPOP) algorithm that integrates the sound concept of knowledge reduction from rough set theory with the POP algorithm. The proposed algorithm not only performs feature selection through the reduction of attributes but also extends the reduction to rules without redundant attributes. As many possible reducts exist in a given rule set, an objective measure is developed for POPFNN to correctly identify the reducts that improve the inferred consequence. Experimental results are presented using published data sets and real-world application involving highway traffic flow prediction to evaluate the effectiveness of using the proposed algorithm to identify fuzzy rules in the POPFNN using compositional rule of inference and singleton fuzzifier (POPFNN-CRI(S)) architecture. Results showed that the proposed rough set-based pseudo outer-product algorithm reduces computational complexity, improves the interpretability of neuro-fuzzy systems by identifying significantly fewer fuzzy rules, and improves the accuracy of the POPFNN. PMID:15563753

  13. Comparative assessment of rule-based and Bayes' theorem as inference engines in diagnosing symptoms for Islamic medication expert system

    NASA Astrophysics Data System (ADS)

    Daud, H.; Razali, R.; Low, T. J.; Sabdin, M.; Zafrul, S. Z. Mohd

    2014-06-01

    An expert system for diagnosing sickness and suggesting treatment based on Islamic Medication (IM) was constructed using Rule Based (RB) and Bayes' theorem (BT) algorithms independently as its inference engine. Comparative assessment on the quality of diagnosing based on symptoms provided by users for certain type of sickness using RB and BT reasoning that lead to the suggested treatment (based on IM) are discussed. Both approaches are found to be useful, each has its own advantages and disadvantages. Major difference of the two algorithms is the selection of symptoms during the diagnosing process. For BT, likely combinations of symptoms need to be classified for each sickness before the diagnosing process. This eliminates any irrelevant sickness based on the combination of symptoms provided by user and combination of symptoms that is unlikely. This is not the case for RB, it will diagnose the sickness as long as one the symptoms is related to the sickness regardless of unlikely combination. Few tests have been carried out using combinations of symptoms for same sickness to investigate their diagnosing accuracy in percentage. BT gives more promising diagnosing results compared to RB for each sickness that comes with common symptoms.

  14. Crustal growth of oceanic island arc inferred from seismic structure of Mariana arc-backarc system

    NASA Astrophysics Data System (ADS)

    Takahashi, N.; Kodaira, S.; Ito, A.; Klemperer, S. L.; Kaneda, Y.; Suyehiro, K.

    2004-12-01

    The Izu-Ogasawara-Marina arc (IBM arc) is one of the typical oceanic island arcs and it has developed repeating magmatic arc volcanisms and backarc spreading since Eocene. Because tectonics of the IBM arc is relatively simple and does not include collisions between the arc and a continent, it is one of best targets to research crustal growth. In 2003, wide-angle seismic survey using 106 ocean bottom seismographs had been carried out as a part of Margin program in collaboration between US and Japan in Mariana region. The seismic line runs from a serpentine diaper near the trench to Parece Vela basin through the Mariana arc, the Marina trough and the West Mariana ridge. We present the characteristics of the seismic structure of the Mariana arc-backarc system and discuss the crustal growth process by comparison with a structure of the northern Izu-Ogasawara arc. Main structural characteristics of the Mariana arc-backarc system are (1) variation of the crustal thickness (Mariana arc: 20 km, West Mariana ridge: 17 km, Mariana trough and Parece Vela basin: 6 km), (2) distribution of an andesitic middle crust with about P-wave velocity of 6 km/s, (3) variation of P-wave velocity in the middle crust (4) velocity anomalies of the lower crust in transition area between the arc and the backarc, (5) thickening of the lower crust under the Mariana trough axis and (6) slow mantle velocities under the Mariana arc, Mariana trough axis and the West Mariana ridge. Above characteristics from (1) to (4) are common to the seismic structure of the northern Izu-Ogasawara arc. In particular, the vertical P-wave velocity gradients of the middle crust under the forearc in both regions tend to become large rather than those under the arc. Main differences of seismic structures between both regions are the velocity gradients and an existence of a thin transition layer between the middle and lower crust. These differences and similarities of the velocity gradient might originate the age and indicate a difference of a crustal differentiation relating each tectonic stage.

  15. Quantifying Modern Recharge to the Nubian Sandstone Aquifer System: Inferences from GRACE and Land Surface Models

    NASA Astrophysics Data System (ADS)

    Mohamed, A.; Sultan, M.; Ahmed, M.; Yan, E.

    2014-12-01

    The Nubian Sandstone Aquifer System (NSAS) is shared by Egypt, Libya, Chad and Sudanand is one of the largest (area: ~ 2 × 106 km2) groundwater systems in the world. Despite its importance to the population of these countries, major hydrological parameters such as modern recharge and extraction rates remain poorly investigated given: (1) the large extent of the NSAS, (2) the absence of comprehensive monitoring networks, (3) the general inaccessibility of many of the NSAS regions, (4) difficulties in collecting background information, largely included in unpublished governmental reports, and (5) limited local funding to support the construction of monitoring networks and/or collection of field and background datasets. Data from monthly Gravity Recovery and Climate Experiment (GRACE) gravity solutions were processed (Gaussian smoothed: 100 km; rescaled) and used to quantify the modern recharge to the NSAS during the period from January 2003 to December 2012. To isolate the groundwater component in GRACE data, the soil moisture and river channel storages were removed using the outputs from the most recent Community Land Model version 4.5 (CLM4.5). GRACE-derived recharge calculations were performed over the southern NSAS outcrops (area: 835 × 103 km2) in Sudan and Chad that receive average annual precipitation of 65 km3 (77.5 mm). GRACE-derived recharge rates were estimated at 2.79 ± 0.98 km3/yr (3.34 ± 1.17 mm/yr). If we take into account the total annual extraction rates (~ 0.4 km3; CEDARE, 2002) from Chad and Sudan the average annual recharge rate for the NSAS could reach up to ~ 3.20 ± 1.18 km3/yr (3.84 ± 1.42 mm/yr). Our recharge rates estimates are similar to those calculated using (1) groundwater flow modelling in the Central Sudan Rift Basins (4-8 mm/yr; Abdalla, 2008), (2) WaterGAP global scale groundwater recharge model (< 5 mm/yr, Döll and Fiedler, 2008), and (3) chloride tracer in Sudan (3.05 mm/yr; Edmunds et al. 1988). Given the available global coverage of the temporal GRACE solutions for the past twelve years and plans are underway for the deployment of a GRACE follow-On and GRACE-II missions, we suggest that within the next few years, GRACE will probably become the most practical, informative, and cost-effective tool for monitoring the recharge of large aquifers across the globe.

  16. Early accretion of protoplanets inferred from a reduced inner solar system 26Al inventory

    NASA Astrophysics Data System (ADS)

    Schiller, Martin; Connelly, James N.; Glad, Aslaug C.; Mikouchi, Takashi; Bizzarro, Martin

    2015-06-01

    The mechanisms and timescales of accretion of 10-1000 km sized planetesimals, the building blocks of planets, are not yet well understood. With planetesimal melting predominantly driven by the decay of the short-lived radionuclide 26Al (26Al?26Mg; t1/2 = 0.73 Ma), its initial abundance determines the permissible timeframe of planetesimal-scale melting and its subsequent cooling history. Currently, precise knowledge about the initial 26Al abundance [(26Al/27Al)0] exists only for the oldest known solids, calcium aluminum-rich inclusions (CAIs) - the so-called canonical value. We have determined the 26Al/27Al of three angrite meteorites, D'Orbigny, Sahara 99555 and NWA 1670, at their time of crystallization, which corresponds to (3.98 ± 0.15) ×10-7, (3.64 ± 0.18) ×10-7, and (5.92 ± 0.59) ×10-7, respectively. Combined with a newly determined absolute U-corrected Pb-Pb age for NWA 1670 of 4564.39 ± 0.24 Ma and published U-corrected Pb-Pb ages for the other two angrites, this allows us to calculate an initial (26Al/27Al)0 of (1.33-0.18+0.21) ×10-5 for the angrite parent body (APB) precursor material at the time of CAI formation, a value four times lower than the accepted canonical value of 5.25 ×10-5. Based on their similar 54Cr/52Cr ratios, most inner solar system materials likely accreted from material containing a similar 26Al/27Al ratio as the APB precursor at the time of CAI formation. To satisfy the abundant evidence for widespread planetesimal differentiation, the subcanonical 26Al budget requires that differentiated planetesimals, and hence protoplanets, accreted rapidly within 0.25 ± 0.15 Ma of the formation of canonical CAIs.

  17. Final Report: Large-Scale Optimization for Bayesian Inference in Complex Systems

    SciTech Connect

    Ghattas, Omar

    2013-10-15

    The SAGUARO (Scalable Algorithms for Groundwater Uncertainty Analysis and Robust Optimiza- tion) Project focuses on the development of scalable numerical algorithms for large-scale Bayesian inversion in complex systems that capitalize on advances in large-scale simulation-based optimiza- tion and inversion methods. Our research is directed in three complementary areas: efficient approximations of the Hessian operator, reductions in complexity of forward simulations via stochastic spectral approximations and model reduction, and employing large-scale optimization concepts to accelerate sampling. Our efforts are integrated in the context of a challenging testbed problem that considers subsurface reacting flow and transport. The MIT component of the SAGUARO Project addresses the intractability of conventional sampling methods for large-scale statistical inverse problems by devising reduced-order models that are faithful to the full-order model over a wide range of parameter values; sampling then employs the reduced model rather than the full model, resulting in very large computational savings. Results indicate little effect on the computed posterior distribution. On the other hand, in the Texas-Georgia Tech component of the project, we retain the full-order model, but exploit inverse problem structure (adjoint-based gradients and partial Hessian information of the parameter-to- observation map) to implicitly extract lower dimensional information on the posterior distribution; this greatly speeds up sampling methods, so that fewer sampling points are needed. We can think of these two approaches as "reduce then sample" and "sample then reduce." In fact, these two approaches are complementary, and can be used in conjunction with each other. Moreover, they both exploit deterministic inverse problem structure, in the form of adjoint-based gradient and Hessian information of the underlying parameter-to-observation map, to achieve their speedups.

  18. Daily water level forecasting using wavelet decomposition and artificial intelligence techniques

    NASA Astrophysics Data System (ADS)

    Seo, Youngmin; Kim, Sungwon; Kisi, Ozgur; Singh, Vijay P.

    2015-01-01

    Reliable water level forecasting for reservoir inflow is essential for reservoir operation. The objective of this paper is to develop and apply two hybrid models for daily water level forecasting and investigate their accuracy. These two hybrid models are wavelet-based artificial neural network (WANN) and wavelet-based adaptive neuro-fuzzy inference system (WANFIS). Wavelet decomposition is employed to decompose an input time series into approximation and detail components. The decomposed time series are used as inputs to artificial neural networks (ANN) and adaptive neuro-fuzzy inference system (ANFIS) for WANN and WANFIS models, respectively. Based on statistical performance indexes, the WANN and WANFIS models are found to produce better efficiency than the ANN and ANFIS models. WANFIS7-sym10 yields the best performance among all other models. It is found that wavelet decomposition improves the accuracy of ANN and ANFIS. This study evaluates the accuracy of the WANN and WANFIS models for different mother wavelets, including Daubechies, Symmlet and Coiflet wavelets. It is found that the model performance is dependent on input sets and mother wavelets, and the wavelet decomposition using mother wavelet, db10, can further improve the efficiency of ANN and ANFIS models. Results obtained from this study indicate that the conjunction of wavelet decomposition and artificial intelligence models can be a useful tool for accurate forecasting daily water level and can yield better efficiency than the conventional forecasting models.

  19. Artificial Intelligent Control for a Novel Advanced Microwave Biodiesel Reactor

    NASA Astrophysics Data System (ADS)

    Wali, W. A.; Hassan, K. H.; Cullen, J. D.; Al-Shamma'a, A. I.; Shaw, A.; Wylie, S. R.

    2011-08-01

    Biodiesel, an alternative diesel fuel made from a renewable source, is produced by the transesterification of vegetable oil or fat with methanol or ethanol. In order to control and monitor the progress of this chemical reaction with complex and highly nonlinear dynamics, the controller must be able to overcome the challenges due to the difficulty in obtaining a mathematical model, as there are many uncertain factors and disturbances during the actual operation of biodiesel reactors. Classical controllers show significant difficulties when trying to control the system automatically. In this paper we propose a comparison of artificial intelligent controllers, Fuzzy logic and Adaptive Neuro-Fuzzy Inference System(ANFIS) for real time control of a novel advanced biodiesel microwave reactor for biodiesel production from waste cooking oil. Fuzzy logic can incorporate expert human judgment to define the system variables and their relationships which cannot be defined by mathematical relationships. The Neuro-fuzzy system consists of components of a fuzzy system except that computations at each stage are performed by a layer of hidden neurons and the neural network's learning capability is provided to enhance the system knowledge. The controllers are used to automatically and continuously adjust the applied power supplied to the microwave reactor under different perturbations. A Labview based software tool will be presented that is used for measurement and control of the full system, with real time monitoring.

  20. Artificial Intelligence in Public Health Prevention of Legionelosis in Drinking Water Systems

    PubMed Central

    Sin?ak, Peter; Ondo, Jaroslav; Kaposztasova, Daniela; Vir?ikova, Maria; Vranayova, Zuzana; Sabol, Jakub

    2014-01-01

    Good quality water supplies and safe sanitation in urban areas are a big challenge for governments throughout the world. Providing adequate water quality is a basic requirement for our lives. The colony forming units of the bacterium Legionella pneumophila in potable water represent a big problem which cannot be overlooked for health protection reasons. We analysed several methods to program a virtual hot water tank with AI (artificial intelligence) tools including neuro-fuzzy systems as a precaution against legionelosis. The main goal of this paper is to present research which simulates the temperature profile in the water tank. This research presents a tool for a water management system to simulate conditions which are able to prevent legionelosis outbreaks in a water system. The challenge is to create a virtual water tank simulator including the water environment which can simulate a situation which is common in building water distribution systems. The key feature of the presented system is its adaptation to any hot water tank. While respecting the basic parameters of hot water, a water supplier and building maintainer are required to ensure the predefined quality and water temperature at each sampling site and avoid the growth of Legionella. The presented system is one small contribution how to overcome a situation when legionelosis could find good conditions to spread and jeopardize human lives. PMID:25153475

  1. Artificial intelligence in public health prevention of legionelosis in drinking water systems.

    PubMed

    Sin?ak, Peter; Ondo, Jaroslav; Kaposztasova, Daniela; Vir?ikova, Maria; Vranayova, Zuzana; Sabol, Jakub

    2014-08-01

    Good quality water supplies and safe sanitation in urban areas are a big challenge for governments throughout the world. Providing adequate water quality is a basic requirement for our lives. The colony forming units of the bacterium Legionella pneumophila in potable water represent a big problem which cannot be overlooked for health protection reasons. We analysed several methods to program a virtual hot water tank with AI (artificial intelligence) tools including neuro-fuzzy systems as a precaution against legionelosis. The main goal of this paper is to present research which simulates the temperature profile in the water tank. This research presents a tool for a water management system to simulate conditions which are able to prevent legionelosis outbreaks in a water system. The challenge is to create a virtual water tank simulator including the water environment which can simulate a situation which is common in building water distribution systems. The key feature of the presented system is its adaptation to any hot water tank. While respecting the basic parameters of hot water, a water supplier and building maintainer are required to ensure the predefined quality and water temperature at each sampling site and avoid the growth of Legionella. The presented system is one small contribution how to overcome a situation when legionelosis could find good conditions to spread and jeopardize human lives. PMID:25153475

  2. User/Tutor Optimal Learning Path in E-Learning Using Comprehensive Neuro-Fuzzy Approach

    ERIC Educational Resources Information Center

    Fazlollahtabar, Hamed; Mahdavi, Iraj

    2009-01-01

    Internet evolution has affected all industrial, commercial, and especially learning activities in the new context of e-learning. Due to cost, time, or flexibility e-learning has been adopted by participators as an alternative training method. By development of computer-based devices and new methods of teaching, e-learning has emerged. The…

  3. Neuro-Fuzzy Controller of a Sensorless PM Motor Drive For Washing Machines

    E-print Network

    of saving up to 60% of the energy being consumed by the older generation of appliances[1]. Two appliances algorithms to enable direct drive from permanent magnet (PM) synchronous motors[3]. #12;Among AC drives of motor poles to generate higher torque at lower speeds for the same power input. The ratio of the drum

  4. Digital modelling of landscape and soil in a mountainous region: A neuro-fuzzy approach

    NASA Astrophysics Data System (ADS)

    Viloria, Jesús A.; Viloria-Botello, Alvaro; Pineda, María Corina; Valera, Angel

    2016-01-01

    Research on genetic relationships between soil and landforms has largely improved soil mapping. Recent technological advances have created innovative methods for modelling the spatial soil variation from digital elevation models (DEMs) and remote sensors. This generates new opportunities for the application of geomorphology to soil mapping. This study applied a method based on artificial neural networks and fuzzy clustering to recognize digital classes of land surfaces in a mountainous area in north-central Venezuela. The spatial variation of the fuzzy memberships exposed the areas where each class predominates, while the class centres helped to recognize the topographic attributes and vegetation cover of each class. The obtained classes of terrain revealed the structure of the land surface, which showed regional differences in climate, vegetation, and topography and landscape stability. The land-surface classes were subdivided on the basis of the geological substratum to produce landscape classes that additionally considered the influence of soil parent material. These classes were used as a framework for soil sampling. A redundancy analysis confirmed that changes of landscape classes explained the variation in soil properties (p = 0.01), and a Kruskal-Wallis test showed significant differences (p = 0.01) in clay, hydraulic conductivity, soil organic carbon, base saturation, and exchangeable Ca and Mg between classes. Thus, the produced landscape classes correspond to three-dimensional bodies that differ in soil conditions. Some changes of land-surface classes coincide with abrupt boundaries in the landscape, such as ridges and thalwegs. However, as the model is continuous, it disclosed the remaining variation between those boundaries.

  5. Use seismic colored inversion and power law committee machine based on imperial competitive algorithm for improving porosity prediction in a heterogeneous reservoir

    NASA Astrophysics Data System (ADS)

    Ansari, Hamid Reza

    2014-09-01

    In this paper we propose a new method for predicting rock porosity based on a combination of several artificial intelligence systems. The method focuses on one of the Iranian carbonate fields in the Persian Gulf. Because there is strong heterogeneity in carbonate formations, estimation of rock properties experiences more challenge than sandstone. For this purpose, seismic colored inversion (SCI) and a new approach of committee machine are used in order to improve porosity estimation. The study comprises three major steps. First, a series of sample-based attributes is calculated from 3D seismic volume. Acoustic impedance is an important attribute that is obtained by the SCI method in this study. Second, porosity log is predicted from seismic attributes using common intelligent computation systems including: probabilistic neural network (PNN), radial basis function network (RBFN), multi-layer feed forward network (MLFN), ?-support vector regression (?-SVR) and adaptive neuro-fuzzy inference system (ANFIS). Finally, a power law committee machine (PLCM) is constructed based on imperial competitive algorithm (ICA) to combine the results of all previous predictions in a single solution. This technique is called PLCM-ICA in this paper. The results show that PLCM-ICA model improved the results of neural networks, support vector machine and neuro-fuzzy system.

  6. Seasonal rainfall forecasting by adaptive network-based fuzzy inference system (ANFIS) using large scale climate signals

    NASA Astrophysics Data System (ADS)

    Moron, Vincent; Barbero, Renaud; Robertson, Andrew W.

    2015-07-01

    Accurate seasonal rainfall forecasting is an important step in the development of reliable runoff forecast models. The large scale climate modes affecting rainfall in Australia have recently been proven useful in rainfall prediction problems. In this study, adaptive network-based fuzzy inference systems (ANFIS) models are developed for the first time for southeast Australia in order to forecast spring rainfall. The models are applied in east, center and west Victoria as case studies. Large scale climate signals comprising El Nino Southern Oscillation (ENSO), Indian Ocean Dipole (IOD) and Inter-decadal Pacific Ocean (IPO) are selected as rainfall predictors. Eight models are developed based on single climate modes (ENSO, IOD, and IPO) and combined climate modes (ENSO-IPO and ENSO-IOD). Root Mean Square Error (RMSE), Mean Absolute Error (MAE), Pearson correlation coefficient (r) and root mean square error in probability (RMSEP) skill score are used to evaluate the performance of the proposed models. The predictions demonstrate that ANFIS models based on individual IOD index perform superior in terms of RMSE, MAE and r to the models based on individual ENSO indices. It is further discovered that IPO is not an effective predictor for the region and the combined ENSO-IOD and ENSO-IPO predictors did not improve the predictions. In order to evaluate the effectiveness of the proposed models a comparison is conducted between ANFIS models and the conventional Artificial Neural Network (ANN), the Predictive Ocean Atmosphere Model for Australia (POAMA) and climatology forecasts. POAMA is the official dynamic model used by the Australian Bureau of Meteorology. The ANFIS predictions certify a superior performance for most of the region compared to ANN and climatology forecasts. POAMA performs better in regards to RMSE and MAE in east and part of central Victoria, however, compared to ANFIS it shows weaker results in west Victoria in terms of prediction errors and RMSEP skill score. In general, ANFIS models show superior results in terms of correlation coefficient for the overall case study. As a pioneer study, it is proposed that ANFIS is a promising tool for the purpose of seasonal predictions in Australia as they produce comparable accuracy using minimal inputs, require less development time and they are less complex compared to dynamic models.

  7. Physical limits of inference

    NASA Astrophysics Data System (ADS)

    Wolpert, David H.

    2008-07-01

    We show that physical devices that perform observation, prediction, or recollection share an underlying mathematical structure. We call devices with that structure “inference devices”. We present a set of existence and impossibility results concerning inference devices. These results hold independent of the precise physical laws governing our universe. In a limited sense, the impossibility results establish that Laplace was wrong to claim that even in a classical, non-chaotic universe the future can be unerringly predicted, given sufficient knowledge of the present. Alternatively, these impossibility results can be viewed as a non-quantum-mechanical “uncertainty principle”. The mathematics of inference devices has close connections to the mathematics of Turing Machines (TMs). In particular, the impossibility results for inference devices are similar to the Halting theorem for TMs. Furthermore, one can define an analog of Universal TMs (UTMs) for inference devices. We call those analogs “strong inference devices”. We use strong inference devices to define the “inference complexity” of an inference task, which is the analog of the Kolmogorov complexity of computing a string. A task-independent bound is derived on how much the inference complexity of an inference task can differ for two different inference devices. This is analogous to the “encoding” bound governing how much the Kolmogorov complexity of a string can differ between two UTMs used to compute that string. However no universe can contain more than one strong inference device. So whereas the Kolmogorov complexity of a string is arbitrary up to specification of the UTM, there is no such arbitrariness in the inference complexity of an inference task. We informally discuss the philosophical implications of these results, e.g., for whether the universe “is” a computer. We also derive some graph-theoretic properties governing any set of multiple inference devices. We also present an extension of the framework to address physical devices used for control. We end with an extension of the framework to address probabilistic inference.

  8. Estimation and optimization of thermal performance of evacuated tube solar collector system

    NASA Astrophysics Data System (ADS)

    Dikmen, Erkan; Ayaz, Mahir; Ezen, H. Hüseyin; Küçüksille, Ecir U.; ?ahin, Arzu ?encan

    2014-05-01

    In this study, artificial neural networks (ANNs) and adaptive neuro-fuzzy (ANFIS) in order to predict the thermal performance of evacuated tube solar collector system have been used. The experimental data for the training and testing of the networks were used. The results of ANN are compared with ANFIS in which the same data sets are used. The R2-value for the thermal performance values of collector is 0.811914 which can be considered as satisfactory. The results obtained when unknown data were presented to the networks are satisfactory and indicate that the proposed method can successfully be used for the prediction of the thermal performance of evacuated tube solar collectors. In addition, new formulations obtained from ANN are presented for the calculation of the thermal performance. The advantages of this approaches compared to the conventional methods are speed, simplicity, and the capacity of the network to learn from examples. In addition, genetic algorithm (GA) was used to maximize the thermal performance of the system. The optimum working conditions of the system were determined by the GA.

  9. Inference or Observation?

    ERIC Educational Resources Information Center

    Finson, Kevin D.

    2010-01-01

    Learning about what inferences are, and what a good inference is, will help students become more scientifically literate and better understand the nature of science in inquiry. Students in K-4 should be able to give explanations about what they investigate (NSTA 1997) and that includes doing so through inferring. This article provides some tips…

  10. A temperature- and strain-rate-dependent model of NiTi shape memory alloys for seismic control of bridges

    NASA Astrophysics Data System (ADS)

    Ozbulut, Osman E.; Hurlebaus, Stefan

    2009-03-01

    This paper proposes a neuro-fuzzy model of NiTi shape memory alloy (SMA) wires that is capable of capturing behavior of superelastic SMAs at different temperatures and at various loading rates while remaining simple enough to realize numerical simulations. First, in order to collect data, uniaxial tensile tests are conducted on superelastic wires in the temperature range of 0 ºC to 40 ºC, and at the loading frequencies of 0.05 Hz to 2 Hz that is the range of interest for seismic applications. Then, an adaptive neuro-fuzzy inference system (ANFIS) is employed to construct a model of SMAs based on experimental input-output data pairs. The fuzzy model obtained from ANFIS training is validated by using an experimental data set that is not used during training. Upon having a model that can represent behavior of superelastic SMAs at various ambient temperature and loading-rates, nonlinear simulation of a multi-span continuous bridge isolated by rubber bearings that is equipped with SMA dampers is carried out. Response of the bridge to a historical earthquake record is presented at different ambient temperatures in order to evaluate the effect of temperature on the performance of the structure. It is shown that SMA damping elements can effectively decrease peak deck displacement and the relative displacement between piers and superstructure in an isolated bridge while recovering all the deformations to their original position.

  11. A Semantics for Static Type Inference 

    E-print Network

    Plotkin, Gordon

    1991-01-01

    Curry’s system for F-deducibility is the basis for static type inference algorithms for programming languages such as ML. If a natural “preservation of types by conversion” rule is added to Curry’s system, it becomes ...

  12. Fuzzy Economizer control using a Prolog-C inference engine 

    E-print Network

    Belur, Raghuveer R.

    1993-01-01

    This research is in two parts: I. Develop a generic tool to perform fuzzy inference on a wide class of systems.Thisis done using Prolog and C. 2.Develop a hierarchical control scheme using this fuzzy inference mechanism ...

  13. Active inference and agency.

    PubMed

    Friston, Karl

    2014-01-01

    I greatly enjoyed Seth's compelling synthesis of sensorimotor contingencies and active inference. I would also like to thank Jim Hopkins for sending me the quote (below)-which speaks directly to the embodied nature of perceptual inference that underlies the perspectives reconciled in Seth (this issue). These perspectives include perception as hypothesis testing, affordance, and sensorimotor contingencies. This commentary briefly rehearses the fundaments of active inference and offers a formal basis for Seth's key argument. PMID:24702520

  14. Inference on Counterfactual Distributions

    E-print Network

    Chernozhukov, Victor V.

    Counterfactual distributions are important ingredients for policy analysis and decomposition analysis in empirical economics. In this article, we develop modeling and inference tools for counterfactual distributions based ...

  15. Inferring unknow boundary conditions of the Greenland Ice Sheet by assimilating ICESat-1 and IceBridge altimetry intothe Ice Sheet System Model.

    NASA Astrophysics Data System (ADS)

    Larour, E. Y.; Khazendar, A.; Seroussi, H. L.; Schlegel, N.; Csatho, B. M.; Schenk, A. F.; Rignot, E. J.; Morlighem, M.

    2014-12-01

    Altimetry signals from missions such as ICESat-1, CryoSat, EnviSat, as well as altimeters onboard Operation IceBridge provide vital insights into processes such as surface mass balance, mass transport and ice-flow dynamics. Historically however, ice-flow models have been focused on assimilating surface velocities from satellite-based radar observations, to infer properties such as basal friction or the position of the bedrock. Here, we leverage a new methodology based on automatic differentation of the Ice Sheet System Model to assimilate surface altimetry data into a reconstruction of the past decade of ice flow on the North Greenland area. We infer corrections to boundary conditions such as basal friction and surface mass balance, as well as corrections to the ice hardness, to best-match the observed altimetry record. We compare these corrections between glaciers such as Petermann Glacier, 79 North and Zacchariae Isstrom. The altimetry signals exhibit very different patterns between East and West, which translate into very different signatures for the inverted boundary conditions. This study gives us greater insights into what differentiates different basins, both in terms of mass transport and ice-flow dynamics, and what could bethe controlling mechanisms behind the very different evolutions of these basins.

  16. Bayesian Inference on Proportional Elections

    PubMed Central

    Brunello, Gabriel Hideki Vatanabe; Nakano, Eduardo Yoshio

    2015-01-01

    Polls for majoritarian voting systems usually show estimates of the percentage of votes for each candidate. However, proportional vote systems do not necessarily guarantee the candidate with the most percentage of votes will be elected. Thus, traditional methods used in majoritarian elections cannot be applied on proportional elections. In this context, the purpose of this paper was to perform a Bayesian inference on proportional elections considering the Brazilian system of seats distribution. More specifically, a methodology to answer the probability that a given party will have representation on the chamber of deputies was developed. Inferences were made on a Bayesian scenario using the Monte Carlo simulation technique, and the developed methodology was applied on data from the Brazilian elections for Members of the Legislative Assembly and Federal Chamber of Deputies in 2010. A performance rate was also presented to evaluate the efficiency of the methodology. Calculations and simulations were carried out using the free R statistical software. PMID:25786259

  17. From Deep Inference to Proof Nets via Cut Elimination

    E-print Network

    Strassburger, Lutz

    From Deep Inference to Proof Nets via Cut Elimination Lutz Straßburger INRIA Saclay in the deep inference system SKS for classical propositional logic can be translated into proof nets. Since the development of the two concepts of deep inference [Gug07] and proof nets [Gir87] the quest for the identity

  18. Distributed generation system using wind/photovoltaic/fuel cell

    NASA Astrophysics Data System (ADS)

    Buasri, Panhathai

    This dissertation investigates the performance and the operation of a distributed generation (DG) power system using wind/photovoltaic/fuel cell (W/PV/FC). The power system consists of a 2500 W photovoltaic array subsystem, a 500 W proton exchange membrane fuel cell (PEMFC) stack subsystem, 300 W wind turbine, 500 W wind turbine, and 1500 W wind energy conversion subsystems. To extract maximum power from the PV, a maximum power point tracker was designed and fabricated. A 4 kW single phase inverter was used to convert the DC voltage to AC voltage; also a 44 kWh battery bank was used to store energy and prevent fluctuation of the power output of the DG system. To connect the fuel cell to the batteries, a DC/DC controller was designed and fabricated. To monitor and study the performance of the DG system under variable conditions, a data acquisition system was designed and installed. The fuel cell subsystem performance was evaluated under standalone operation using a variable resistance and under interactive mode, connected to the batteries. The manufacturing data and the experimental data were used to develop an electrical circuit model to the fuel cell. Furthermore, harmonic analysis of the DG system was investigated. For an inverter, the AC voltage delivered to the grid changed depending on the time, load, and electronic equipment that was connected. The quality of the DG system was evaluated by investigating the harmonics generated by the power electronics converters. Finally, each individual subsystem of the DG system was modeled using the neuro-fuzzy approach. The model was used to predict the performance of the DG system under variable conditions, such as passing clouds and wind gust conditions. The steady-state behaviors of the model were validated by the experimental results under different operating conditions.

  19. Inferring Instantaneous, Multivariate and Nonlinear Sensitivities for the Analysis of Feedback Processes in a Dynamical System: Lorenz Model Case Study

    NASA Technical Reports Server (NTRS)

    Aires, Filipe; Rossow, William B.; Hansen, James E. (Technical Monitor)

    2001-01-01

    A new approach is presented for the analysis of feedback processes in a nonlinear dynamical system by observing its variations. The new methodology consists of statistical estimates of the sensitivities between all pairs of variables in the system based on a neural network modeling of the dynamical system. The model can then be used to estimate the instantaneous, multivariate and nonlinear sensitivities, which are shown to be essential for the analysis of the feedbacks processes involved in the dynamical system. The method is described and tested on synthetic data from the low-order Lorenz circulation model where the correct sensitivities can be evaluated analytically.

  20. Simulation Experiments on the Relative Accuracy of Inferred Atmospheric States from Idealized Wind and Temperature Profiling Systems

    NASA Technical Reports Server (NTRS)

    Halem, M.; Dlouhy, R.

    1984-01-01

    The First GARP Global Experiment (FGGE) led to the planning, design and implementation of a global observing system. Technologies as coherent CO2 LIDAR systems and highly sensitive IR detectors offer the potential of more accurate global spaceborne observation systems. The advent of super computers allows general circulation modeling and more sophisticated data analysis schemes. The consideration of advanced spaceborne systems better suited to meet the new emerging requirements are suggested. The Global Weather Experiment provides us with a new baseline to assess data accuracy and forecasting capabilities which is used for study of the incremental performance.

  1. Some More Curious Inferences 

    E-print Network

    Ketland, Jeffrey

    2005-01-01

    The following inference is valid: There are exactly 101 dalmatians, There are exactly 100 food bowls, Each dalmatian uses exactly one food bowl Hence, at least two dalmatians use the same food bowl. Here, ...

  2. PubMed

    Azamathulla, H Md; Ab Ghani, Aminuddin; Fei, Seow Yen

    2012-03-01

    The necessity of sewers to carry sediment has been recognized for many years. Typically, old sewage systems were designated based on self-cleansing concept where there is no deposition in sewer. These codes were applicable to non-cohesive sediments (typically storm sewers). This study presents adaptive neuro-fuzzy inference system (ANFIS), which is a combination of neural network and fuzzy logic, as an alternative approach to predict the functional relationships of sediment transport in sewer pipe systems. The proposed relationship can be applied to different boundaries with partially full flow. The present ANFIS approach gives satisfactory results (r(2) = 0.98 and RMSE = 0.002431) compared to the existing predictor. PMID:22389640

  3. Quantum inferring acausal structure

    E-print Network

    Adam Glos; Dariusz Kurzyk

    2015-11-17

    This paper presents a generalization of probability theory and inferring structures in a field of quantum information theory. First, the formalism of quantum information theory is introduced. Next, quantum theory is used to define a quantum conditional operators which are fundamental in describing quantum inferring structures. The result of reasoning performance over the structures was presented in a Monty Hall game. The experiment shows that entanglement of quantum states has influence on optimal behaviour of player in the game.

  4. Social Inference Through Technology

    NASA Astrophysics Data System (ADS)

    Oulasvirta, Antti

    Awareness cues are computer-mediated, real-time indicators of people’s undertakings, whereabouts, and intentions. Already in the mid-1970 s, UNIX users could use commands such as “finger” and “talk” to find out who was online and to chat. The small icons in instant messaging (IM) applications that indicate coconversants’ presence in the discussion space are the successors of “finger” output. Similar indicators can be found in online communities, media-sharing services, Internet relay chat (IRC), and location-based messaging applications. But presence and availability indicators are only the tip of the iceberg. Technological progress has enabled richer, more accurate, and more intimate indicators. For example, there are mobile services that allow friends to query and follow each other’s locations. Remote monitoring systems developed for health care allow relatives and doctors to assess the wellbeing of homebound patients (see, e.g., Tang and Venables 2000). But users also utilize cues that have not been deliberately designed for this purpose. For example, online gamers pay attention to other characters’ behavior to infer what the other players are like “in real life.” There is a common denominator underlying these examples: shared activities rely on the technology’s representation of the remote person. The other human being is not physically present but present only through a narrow technological channel.

  5. Slip rates and spatially variable creep on faults of the northern San Andreas system inferred through Bayesian inversion of Global Positioning System data

    NASA Astrophysics Data System (ADS)

    Murray, Jessica R.; Minson, Sarah E.; Svarc, Jerry L.

    2014-07-01

    Fault creep, depending on its rate and spatial extent, is thought to reduce earthquake hazard by releasing tectonic strain aseismically. We use Bayesian inversion and a newly expanded GPS data set to infer the deep slip rates below assigned locking depths on the San Andreas, Maacama, and Bartlett Springs Faults of Northern California and, for the latter two, the spatially variable interseismic creep rate above the locking depth. We estimate deep slip rates of 21.5 ± 0.5, 13.1 ± 0.8, and 7.5 ± 0.7 mm/yr below 16 km, 9 km, and 13 km on the San Andreas, Maacama, and Bartlett Springs Faults, respectively. We infer that on average the Bartlett Springs fault creeps from the Earth's surface to 13 km depth, and below 5 km the creep rate approaches the deep slip rate. This implies that microseismicity may extend below the locking depth; however, we cannot rule out the presence of locked patches in the seismogenic zone that could generate moderate earthquakes. Our estimated Maacama creep rate, while comparable to the inferred deep slip rate at the Earth's surface, decreases with depth, implying a slip deficit exists. The Maacama deep slip rate estimate, 13.1 mm/yr, exceeds long-term geologic slip rate estimates, perhaps due to distributed off-fault strain or the presence of multiple active fault strands. While our creep rate estimates are relatively insensitive to choice of model locking depth, insufficient independent information regarding locking depths is a source of epistemic uncertainty that impacts deep slip rate estimates.

  6. A wavelet transform based feature extraction and classification of cardiac disorder.

    PubMed

    Sumathi, S; Beaulah, H Lilly; Vanithamani, R

    2014-09-01

    This paper approaches an intellectual diagnosis system using hybrid approach of Adaptive Neuro-Fuzzy Inference System (ANFIS) model for classification of Electrocardiogram (ECG) signals. This method is based on using Symlet Wavelet Transform for analyzing the ECG signals and extracting the parameters related to dangerous cardiac arrhythmias. In these particular parameters were used as input of ANFIS classifier, five most important types of ECG signals they are Normal Sinus Rhythm (NSR), Atrial Fibrillation (AF), Pre-Ventricular Contraction (PVC), Ventricular Fibrillation (VF), and Ventricular Flutter (VFLU) Myocardial Ischemia. The inclusion of ANFIS in the complex investigating algorithms yields very interesting recognition and classification capabilities across a broad spectrum of biomedical engineering. The performance of the ANFIS model was evaluated in terms of training performance and classification accuracies. The results give importance to that the proposed ANFIS model illustrates potential advantage in classifying the ECG signals. The classification accuracy of 98.24 % is achieved. PMID:25023652

  7. Anfis Approach for Sssc Controller Design for the Improvement of Transient Stability Performance

    NASA Astrophysics Data System (ADS)

    Khuntia, Swasti R.; Panda, Sidhartha

    2011-06-01

    In this paper, Adaptive Neuro-Fuzzy Inference System (ANFIS) method based on the Artificial Neural Network (ANN) is applied to design a Static Synchronous Series Compensator (SSSC)-based controller for improvement of transient stability. The proposed ANFIS controller combines the advantages of fuzzy controller and quick response and adaptability nature of ANN. The ANFIS structures were trained using the generated database by fuzzy controller of SSSC. It is observed that the proposed SSSC controller improves greatly the voltage profile of the system under severe disturbances. The results prove that the proposed SSSC-based ANFIS controller is found to be robust to fault location and change in operating conditions. Further, the results obtained are compared with the conventional lead-lag controllers for SSSC.

  8. FUNCTIONAL OVERLAP OF ROOT SYSTEMS IN AN OLD-GROWTH FOREST INFERRED FROM TRACER 15N UPTAKE

    EPA Science Inventory

    Belowground competition for nutrients and water is considered a key factor affecting spatial organization and productivity of individual stems within forest stands, yet there are few data describing the lateral extent and overlap of competing root systems. We quantified the func...

  9. Stress Pattern of the Shanxi Rift System, North China, Inferred from the Inversion of New Focal Mechanisms

    NASA Astrophysics Data System (ADS)

    Li, Bin; Sørensen, Mathilde; Atakan, Kuvvet; Havskov, Jens

    2015-04-01

    The Shanxi rift system is one of the most outstanding intra-plate transtensional fault zones in the North China block. Earthquake focal mechanisms of the rift system are investigated for the time period 1965 - Apr. 2014. A total of 143 focal mechanisms of ML ? 3.0 earthquakes were compiled. Among them, 105 solutions are newly determined by combining the P-wave first motions and full waveform inversion, and 38 solutions are from available published data. Stress tensor inversion was then performed based on the new database. The results show that most solutions exhibit normal or strike-slip faulting, and the regional stress field is transtensional and dominated by NNW-SSE extension. This correlates well with results from GPS data, geological field observations and leveling measurements across the faults. Heterogeneity exists in the regional stress field, as indicated by individual stress tensor inversions conducted for five subzones. While the minimum stress axis (?3) appears to be consistent and stable, the orientations, especially the plunges, of the maximum and intermediate stresses (?1 and ?2) vary significantly among the different subzones. Based on our results and combining multidisciplinary observations from geological surveys, GPS and cross-fault monitoring, a kinematic model is proposed, in which the Shanxi rift system is situated between two opposite rotating blocks, exhibiting a transtensional stress regime. This model illustrates the present-day stress field and its correlation with the regional tectonics, as well as the current crustal deformation of the Shanxi rift system. Results obtained in this study, may help to understand the geodynamics, neotectonic activity, active seismicity and potential seismic hazard in this region of North China.

  10. A hybrid neural networks-fuzzy logic-genetic algorithm for grade estimation

    NASA Astrophysics Data System (ADS)

    Tahmasebi, Pejman; Hezarkhani, Ardeshir

    2012-05-01

    The grade estimation is a quite important and money/time-consuming stage in a mine project, which is considered as a challenge for the geologists and mining engineers due to the structural complexities in mineral ore deposits. To overcome this problem, several artificial intelligence techniques such as Artificial Neural Networks (ANN) and Fuzzy Logic (FL) have recently been employed with various architectures and properties. However, due to the constraints of both methods, they yield the desired results only under the specific circumstances. As an example, one major problem in FL is the difficulty of constructing the membership functions (MFs).Other problems such as architecture and local minima could also be located in ANN designing. Therefore, a new methodology is presented in this paper for grade estimation. This method which is based on ANN and FL is called “Coactive Neuro-Fuzzy Inference System” (CANFIS) which combines two approaches, ANN and FL. The combination of these two artificial intelligence approaches is achieved via the verbal and numerical power of intelligent systems. To improve the performance of this system, a Genetic Algorithm (GA) - as a well-known technique to solve the complex optimization problems - is also employed to optimize the network parameters including learning rate, momentum of the network and the number of MFs for each input. A comparison of these techniques (ANN, Adaptive Neuro-Fuzzy Inference System or ANFIS) with this new method (CANFIS-GA) is also carried out through a case study in Sungun copper deposit, located in East-Azerbaijan, Iran. The results show that CANFIS-GA could be a faster and more accurate alternative to the existing time-consuming methodologies for ore grade estimation and that is, therefore, suggested to be applied for grade estimation in similar problems.

  11. A hybrid neural networks-fuzzy logic-genetic algorithm for grade estimation

    PubMed Central

    Tahmasebi, Pejman; Hezarkhani, Ardeshir

    2012-01-01

    The grade estimation is a quite important and money/time-consuming stage in a mine project, which is considered as a challenge for the geologists and mining engineers due to the structural complexities in mineral ore deposits. To overcome this problem, several artificial intelligence techniques such as Artificial Neural Networks (ANN) and Fuzzy Logic (FL) have recently been employed with various architectures and properties. However, due to the constraints of both methods, they yield the desired results only under the specific circumstances. As an example, one major problem in FL is the difficulty of constructing the membership functions (MFs).Other problems such as architecture and local minima could also be located in ANN designing. Therefore, a new methodology is presented in this paper for grade estimation. This method which is based on ANN and FL is called “Coactive Neuro-Fuzzy Inference System” (CANFIS) which combines two approaches, ANN and FL. The combination of these two artificial intelligence approaches is achieved via the verbal and numerical power of intelligent systems. To improve the performance of this system, a Genetic Algorithm (GA) – as a well-known technique to solve the complex optimization problems – is also employed to optimize the network parameters including learning rate, momentum of the network and the number of MFs for each input. A comparison of these techniques (ANN, Adaptive Neuro-Fuzzy Inference System or ANFIS) with this new method (CANFIS–GA) is also carried out through a case study in Sungun copper deposit, located in East-Azerbaijan, Iran. The results show that CANFIS–GA could be a faster and more accurate alternative to the existing time-consuming methodologies for ore grade estimation and that is, therefore, suggested to be applied for grade estimation in similar problems. PMID:25540468

  12. Structure of a low-enthalpy geothermal system inferred from magnetotellurics - A case study from Sri Lanka

    NASA Astrophysics Data System (ADS)

    Nimalsiri, Thusitha Bandara; Suriyaarachchi, Nuwan Buddhika; Hobbs, Bruce; Manzella, Adele; Fonseka, Morrel; Dharmagunawardena, H. A.; Subasinghe, Nalaka Deepal

    2015-06-01

    First comprehensive geothermal exploration in Sri Lanka was conducted in 2010 encompassing seven thermal springs, of which Kapurella records the highest temperature. The study consisted of passive magnetotelluric (MT) soundings, in which static shifts were corrected using time domain electromagnetic method (TDEM). A frequency range of 12,500-0.001 Hz was used for MT acquisition and polar diagrams were employed for dimensionality determination. MT and TDEM data were jointly inverted and 2D models were created using both transverse electric and transverse magnetic modes. A conductive southeast dipping structure is revealed from both phase pseudosections and the preferred 2D inversion model. A conductive formation starting at a depth of 7.5 km shows a direct link with the dipping structure. We suggest that these conductive structures are accounted for deep circulation and accumulation of groundwater. Our results show the geothermal reservoir of Kapurella system with a lateral extension of around 2.5 km and a depth range of 3 km. It is further found that the associated dolerite dike is not the source of heat although it could be acting as an impermeable barrier to form the reservoir. The results have indicated the location of the deep reservoir and the possible fluid path of the Kapurella system, which could be utilized to direct future geothermal studies. This pioneering study makes suggestions to improve future MT data acquisition and to use boreholes and other geophysical methods to improve the investigation of structures at depth.

  13. "Groundwater ages" of the Lake Chad multi-layer aquifers system inferred from 14C and 36Cl data

    NASA Astrophysics Data System (ADS)

    Bouchez, Camille; Deschamps, Pierre; Goncalves, Julio; Hamelin, Bruno; Seidel, Jean-Luc; Doumnang, Jean-Claude

    2014-05-01

    Assessment of recharge, paleo-recharge and groundwater residence time of aquifer systems of the Sahel is pivotal for a sustainable management of this vulnerable resource. Due to its stratified aquifer system, the Lake Chad Basin (LCB) offers the opportunity to assess recharge processes over time and to link climate and hydrology in the Sahel. Located in north-central Africa at the fringe between the Sahel and the Sahara, the lake Chad basin (LCB) is an endorheic basin of 2,5.106 km2. With a monsoon climate, the majority of the rainfall occurs in the southern one third of the basin, the Chari/Logone River system transporting about 90% of the runoff generated within the drainage basin. A complex multi-layer aquifer system is located in the central part of the LCB. The Quaternary unconfined aquifer, covering 500 000 km2, is characterized by the occurrence of poorly understood piezometric depressions. Artesian groundwaters are found in the Plio-Pleistocene lacustrine and deltaic sedimentary aquifers (early Pliocene and Continental Terminal). The present-day lake is in hydraulic contact with the Quaternary Aquifer, but during past megalake phases, most of the Quaternary aquifer was submerged and may experience major recharge events. To identify active recharge area and assess groundwater dynamics, one hundred surface and groundwater samples of all layers have been collected over the southern part of the LCB. Major and trace elements have been analyzed. Measurements of 36Cl have been carried out at CEREGE, on the French 5 MV AMS National Facility ASTER and 14C activities have been analyzed for 17 samples on the French AMS ARTEMIS. Additionally, the stable isotopic composition was measured on the artesian aquifer samples. In the Quaternary aquifer, results show a large scatter with waters having very different isotopic and geochemical signature. In its southern part and in the vicinity of the surface waters, groundwaters are predominantly Ca-Mg-HCO3 type waters with very high 36Cl/Cl ratio (>1000.10-15 at/at) very likely linked to the bomb pulse. These high 36Cl/Cl ratios are in the same order than the 36Cl/Cl signature of surface waters active modern recharge in this area. In the other part of the Quaternary Aquifer, waters are Na-HCO3-SO4-Cl type and are characterized by lower 36Cl/Cl ratios (around 200.10-15 at/at), suggesting longer residence time of the groundwaters. The 14C contents of the unconfined aquifer waters are all above 50 pmc, suggesting recent or Holocene recharge of this system. In contrast, the confined aquifer has a more homogeneous geochemical signature. The 14C contents are below all 0.5 pmc and mainly below detection level. 36Cl/Cl ratios are

  14. 3D fluid-structure modelling and vibration analysis for fault diagnosis of Francis turbine using multiple ANN and multiple ANFIS

    NASA Astrophysics Data System (ADS)

    Saeed, R. A.; Galybin, A. N.; Popov, V.

    2013-01-01

    This paper discusses condition monitoring and fault diagnosis in Francis turbine based on integration of numerical modelling with several different artificial intelligence (AI) techniques. In this study, a numerical approach for fluid-structure (turbine runner) analysis is presented. The results of numerical analysis provide frequency response functions (FRFs) data sets along x-, y- and z-directions under different operating load and different position and size of faults in the structure. To extract features and reduce the dimensionality of the obtained FRF data, the principal component analysis (PCA) has been applied. Subsequently, the extracted features are formulated and fed into multiple artificial neural networks (ANN) and multiple adaptive neuro-fuzzy inference systems (ANFIS) in order to identify the size and position of the damage in the runner and estimate the turbine operating conditions. The results demonstrated the effectiveness of this approach and provide satisfactory accuracy even when the input data are corrupted with certain level of noise.

  15. Study relationship between inorganic and organic coal analysis with gross calorific value by multiple regression and ANFIS

    USGS Publications Warehouse

    Chelgani, S.C.; Hart, B.; Grady, W.C.; Hower, J.C.

    2011-01-01

    The relationship between maceral content plus mineral matter and gross calorific value (GCV) for a wide range of West Virginia coal samples (from 6518 to 15330 BTU/lb; 15.16 to 35.66MJ/kg) has been investigated by multivariable regression and adaptive neuro-fuzzy inference system (ANFIS). The stepwise least square mathematical method comparison between liptinite, vitrinite, plus mineral matter as input data sets with measured GCV reported a nonlinear correlation coefficient (R2) of 0.83. Using the same data set the correlation between the predicted GCV from the ANFIS model and the actual GCV reported a R2 value of 0.96. It was determined that the GCV-based prediction methods, as used in this article, can provide a reasonable estimation of GCV. Copyright ?? Taylor & Francis Group, LLC.

  16. Assessment of effective parameters on dilution using approximate reasoning methods in longwall mining method, Iran coal mines

    E-print Network

    Owladeghaffari, H; Saeedi, G H R

    2008-01-01

    Approximately more than 90% of all coal production in Iranian underground mines is derived directly longwall mining method. Out of seam dilution is one of the essential problems in these mines. Therefore the dilution can impose the additional cost of mining and milling. As a result, recognition of the effective parameters on the dilution has a remarkable role in industry. In this way, this paper has analyzed the influence of 13 parameters (attributed variables) versus the decision attribute (dilution value), so that using two approximate reasoning methods, namely Rough Set Theory (RST) and Self Organizing Neuro- Fuzzy Inference System (SONFIS) the best rules on our collected data sets has been extracted. The other benefit of later methods is to predict new unknown cases. So, the reduced sets (reducts) by RST have been obtained. Therefore the emerged results by utilizing mentioned methods shows that the high sensitive variables are thickness of layer, length of stope, rate of advance, number of miners, type of...

  17. Effective viscoplastic behavior of polycrystalline aggregates lacking four independent slip systems inferred from homogenization methods; application to olivine

    NASA Astrophysics Data System (ADS)

    Detrez, F.; Castelnau, O.; Cordier, P.; Merkel, S.; Raterron, P.

    2015-10-01

    Polycrystalline aggregates lacking four independent systems for the glide of dislocations can deform in a purely viscoplastic regime only if additional deformation mechanisms (such as grain boundary sliding and diffusion) are activated. We introduce an implementation of the self-consistent scheme in which this additional physical mechanism, considered as a stress relaxation mechanism, is represented by a nonlinear isotropic viscoplastic potential. Several nonlinear extensions of the self-consistent scheme, including the second-order method of Ponte-Castañeda, are used to provide an estimate of the effective viscoplastic behavior of such polycrystals. The implementation of the method includes an approximation of the isotropic potential to ensure convergence of the attractive fixed-point numerical algorithm. The method is then applied to olivine polycrystals, the main constituent of the Earth's upper mantle. Due to the extreme local anisotropy of the local constitutive behavior and the subsequent intraphase stress and strain-rate field heterogeneities, the second-order method is the only extension providing qualitative and quantitative accurate results. The effective viscosity is strongly dependent on the strength of the relaxation mechanism. For olivine, a linear viscous relaxation (e.g. diffusion) could be relevant; in that case, the polycrystal stress sensitivity is reduced compared to that of dislocation glide, and the most active slip system is not necessarily the one with the smallest reference stress due to stress concentrations. This study reveals the significant importance of the strength and stress sensitivity of the additional relaxation mechanism for the rheology and lattice preferred orientation in such highly anisotropic polycrystalline aggregates.

  18. The Bayes Inference Engine

    SciTech Connect

    Hanson, K.M.; Cunningham, G.S.

    1996-04-01

    The authors are developing a computer application, called the Bayes Inference Engine, to provide the means to make inferences about models of physical reality within a Bayesian framework. The construction of complex nonlinear models is achieved by a fully object-oriented design. The models are represented by a data-flow diagram that may be manipulated by the analyst through a graphical programming environment. Maximum a posteriori solutions are achieved using a general, gradient-based optimization algorithm. The application incorporates a new technique of estimating and visualizing the uncertainties in specific aspects of the model.

  19. Spatial and temporal geochemical trends in the hydrothermal system of Yellowstone National Park: Inferences from river solute fluxes

    USGS Publications Warehouse

    Hurwitz, S.; Lowenstern, J. B.; Heasler, H.

    2007-01-01

    We present and analyze a chemical dataset that includes the concentrations and fluxes of HCO3-, SO42-, Cl-, and F- in the major rivers draining Yellowstone National Park (YNP) for the 2002-2004 water years (1 October 2001 - 30 September 2004). The total (molar) flux in all rivers decreases in the following order, HCO3- > Cl- > SO42- > F-, but each river is characterized by a distinct chemical composition, implying large-scale spatial heterogeneity in the inputs of the various solutes. The data also display non-uniform temporal trends; whereas solute concentrations and fluxes are nearly constant during base-flow conditions, concentrations decrease, solute fluxes increase, and HCO3-/Cl-, and SO42-/Cl- increase during the late-spring high-flow period. HCO3-/SO42- decreases with increasing discharge in the Madison and Falls Rivers, but increases with discharge in the Yellowstone and Snake Rivers. The non-linear relations between solute concentrations and river discharge and the change in anion ratios associated with spring runoff are explained by mixing between two components: (1) a component that is discharged during base-flow conditions and (2) a component associated with snow-melt runoff characterized by higher HCO3-/Cl- and SO42-/Cl-. The fraction of the second component is greater in the Yellowstone and Snake Rivers, which host lakes in their drainage basins and where a large fraction of the solute flux follows thaw of ice cover in the spring months. Although the total river HCO3- flux is larger than the flux of other solutes (HCO3-/Cl- ??? 3), the CO2 equivalent flux is only ??? 1% of the estimated emission of magmatic CO2 soil emissions from Yellowstone. No anomalous solute flux in response to perturbations in the hydrothermal system was observed, possibly because gage locations are too distant from areas of disturbance, or because of the relatively low sampling frequency. In order to detect changes in river hydrothermal solute fluxes, sampling at higher frequencies with better spatial coverage would be required. Our analysis also suggests that it might be more feasible to detect large-scale heating or cooling of the hydrothermal system by tracking changes in gas and steam flux than by tracking changes in river solute flux.

  20. Does the South Atlantic Anomaly influence the ionospheric Sq current system? Inferences from analysis of ground-based magnetic data

    NASA Astrophysics Data System (ADS)

    Koch, Stephan; Kuvshinov, Alexey

    2015-12-01

    We study if and how the South Atlantic Anomaly influences the ionospheric solar quiet (Sq) current system. Geomagnetically quiet days are processed for the years 1990 and 2011, and the Sq foci tracks are analyzed. The two datasets allow to investigate the influence of the observatory network and the solar activity on the Sq source determination. The computed tracks result in pronounced bands in the northern and southern hemisphere, which seem to neither follow the geographic nor the geomagnetic or dip equator. Remarkably, we observe a distinct scattering of the tracks over the South Atlantic Anomaly. This systematic scattering is due to a larger shift of the southern hemisphere focus northwards during the northern summer solstice and southwards during the southern summer solstice. The physical mechanism of this systematic effect remains unclear. The longitudinal variations of the Sq foci are believed to have their origin from an influence of non-migrating tides as reported in recent studies and the anomalous weak amplitude of the geomagnetic main field over the South Atlantic Anomaly.

  1. Temporal evolution of a magmatic dike system inferred from the complex frequencies of very long period seismic signals

    NASA Astrophysics Data System (ADS)

    Kumagai, Hiroyuki

    2006-06-01

    I present a detailed description of temporal variations in the complex frequencies of very long period (VLP) events observed in association with an earthquake swarm that occurred beneath Hachijo Island, Japan. The individual VLP signals show simple, decaying, harmonic oscillations with periods near 10 s, and they last for about 300 s. The VLP activity began on 20 August 2002 and continued until 2 April 2003. Spectral analysis of the VLP waveforms identifies two spectral peaks, of which the complex frequencies show systematic temporal variations at the beginning of the VLP activity. The Q values of both the peaks show increasing trends from roughly 15 to 35 in the time period between 22 and 26 August. The frequency of one peak shows a decreasing trend from 0.1 to 0.09 Hz, while the frequency of the other peak shows an increasing trend from 0.128 to 0.136 Hz during this time. After these systematic variations, the frequencies and Q values of the two peaks remain roughly constant. Waveform simulations based on a fluid-filled crack model indicate that the observed systematic temporal variations can be reasonably explained by gradual expansion of a crack containing a basalt-gas mixture. The roughly constant frequencies and Q values of the two peaks after these systematic variations suggest that the magmatic dike persistently existed beneath Hachijo Island for more than 6 months. Mass and heat advection is required to sustain the dike system, implying magmatic flow and convection in the dike and magma chamber beneath this island.

  2. An expert system shell for inferring vegetation characteristics: Changes to the historical cover type database (Task F)

    NASA Technical Reports Server (NTRS)

    1993-01-01

    All the options in the NASA VEGetation Workbench (VEG) make use of a database of historical cover types. This database contains results from experiments by scientists on a wide variety of different cover types. The learning system uses the database to provide positive and negative training examples of classes that enable it to learn distinguishing features between classes of vegetation. All the other VEG options use the database to estimate the error bounds involved in the results obtained when various analysis techniques are applied to the sample of cover type data that is being studied. In the previous version of VEG, the historical cover type database was stored as part of the VEG knowledge base. This database was removed from the knowledge base. It is now stored as a series of flat files that are external to VEG. An interface between VEG and these files was provided. The interface allows the user to select which files of historical data to use. The files are then read, and the data are stored in Knowledge Engineering Environment (KEE) units using the same organization of units as in the previous version of VEG. The interface also allows the user to delete some or all of the historical database units from VEG and load new historical data from a file. This report summarizes the use of the historical cover type database in VEG. It then describes the new interface to the files containing the historical data. It describes minor changes that were made to VEG to enable the externally stored database to be used. Test runs to test the operation of the new interface and also to test the operation of VEG using historical data loaded from external files are described. Task F was completed. A Sun cartridge tape containing the KEE and Common Lisp code for the new interface and the modified version of the VEG knowledge base was delivered to the NASA GSFC technical representative.

  3. Real-Time Inference of Mental States from Facial Expressions and Upper Body Gestures

    E-print Network

    Baltrusaitis, Tadas

    We present a real-time system for detecting facial action units and inferring emotional states from head and shoulder gestures and facial expressions. The dynamic system uses three levels of inference on progressively ...

  4. Perception as Unconscious Inference

    E-print Network

    Hatfield, Gary

    5 Perception as Unconscious Inference GARY HATFIELD Department of Philosophy, University of Pennsylvania, USA Consider for a moment the spatial and chromatic dimensions of your visual expe- rience perception to which I've drawn your attention are objects of study in contemporary perceptual psychology

  5. Decision generation tools and Bayesian inference

    NASA Astrophysics Data System (ADS)

    Jannson, Tomasz; Wang, Wenjian; Forrester, Thomas; Kostrzewski, Andrew; Veeris, Christian; Nielsen, Thomas

    2014-05-01

    Digital Decision Generation (DDG) tools are important software sub-systems of Command and Control (C2) systems and technologies. In this paper, we present a special type of DDGs based on Bayesian Inference, related to adverse (hostile) networks, including such important applications as terrorism-related networks and organized crime ones.

  6. Modeling of stage-discharge relationship for Gharraf River, southern Iraq using backpropagation artificial neural networks, M5 decision trees, and Takagi-Sugeno inference system technique: a comparative study

    NASA Astrophysics Data System (ADS)

    Al-Abadi, Alaa M.

    2014-12-01

    The potential of using three different data-driven techniques namely, multilayer perceptron with backpropagation artificial neural network (MLP), M5 decision tree model, and Takagi-Sugeno (TS) inference system for mimic stage-discharge relationship at Gharraf River system, southern Iraq has been investigated and discussed in this study. The study used the available stage and discharge data for predicting discharge using different combinations of stage, antecedent stages, and antecedent discharge values. The models' results were compared using root mean squared error (RMSE) and coefficient of determination (R 2) error statistics. The results of the comparison in testing stage reveal that M5 and Takagi-Sugeno techniques have certain advantages for setting up stage-discharge than multilayer perceptron artificial neural network. Although the performance of TS inference system was very close to that for M5 model in terms of R 2, the M5 method has the lowest RMSE (8.10 m3/s). The study implies that both M5 and TS inference systems are promising tool for identifying stage-discharge relationship in the study area.

  7. Action understanding and active inference

    PubMed Central

    Mattout, Jérémie; Kilner, James

    2012-01-01

    We have suggested that the mirror-neuron system might be usefully understood as implementing Bayes-optimal perception of actions emitted by oneself or others. To substantiate this claim, we present neuronal simulations that show the same representations can prescribe motor behavior and encode motor intentions during action–observation. These simulations are based on the free-energy formulation of active inference, which is formally related to predictive coding. In this scheme, (generalised) states of the world are represented as trajectories. When these states include motor trajectories they implicitly entail intentions (future motor states). Optimizing the representation of these intentions enables predictive coding in a prospective sense. Crucially, the same generative models used to make predictions can be deployed to predict the actions of self or others by simply changing the bias or precision (i.e. attention) afforded to proprioceptive signals. We illustrate these points using simulations of handwriting to illustrate neuronally plausible generation and recognition of itinerant (wandering) motor trajectories. We then use the same simulations to produce synthetic electrophysiological responses to violations of intentional expectations. Our results affirm that a Bayes-optimal approach provides a principled framework, which accommodates current thinking about the mirror-neuron system. Furthermore, it endorses the general formulation of action as active inference. PMID:21327826

  8. Optimal inference of sameness

    PubMed Central

    van den Berg, Ronald; Vogel, Michael; Josi?, Krešimir; Ma, Wei Ji

    2012-01-01

    Deciding whether a set of objects are the same or different is a cornerstone of perception and cognition. Surprisingly, no principled quantitative model of sameness judgment exists. We tested whether human sameness judgment under sensory noise can be modeled as a form of probabilistically optimal inference. An optimal observer would compare the reliability-weighted variance of the sensory measurements with a set size-dependent criterion. We conducted two experiments, in which we varied set size and individual stimulus reliabilities. We found that the optimal-observer model accurately describes human behavior, outperforms plausible alternatives in a rigorous model comparison, and accounts for three key findings in the animal cognition literature. Our results provide a normative footing for the study of sameness judgment and indicate that the notion of perception as near-optimal inference extends to abstract relations. PMID:22315400

  9. Validate High Stakes Inferences by Designing Good Experiments, Not Audit Items: A Comment on "Self-Monitoring Assessments Educational Accountability Systems"

    ERIC Educational Resources Information Center

    Briggs, Derek C.

    2010-01-01

    The use of large-scale assessments for making high stakes inferences about students and the schools in which they are situated is premised on the assumption that tests are sensitive to good instruction. An increase in the quality of classroom instruction should cause, on the average, an increase in test scores. In work with a number of colleagues…

  10. 110 IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 15, NO. 1, JANUARY 2004 A Neuro-Fuzzy Scheme for Simultaneous Feature

    E-print Network

    Chakraborty, Debrup

    for Simultaneous Feature Selection and Fuzzy Rule-Based Classification Debrup Chakraborty and Nikhil R. Pal, Senior 700108, India (e-mail: debrup_r@isical.ac.in; nikhil@isical.ac.in). Digital Object Identifier 10.1109/TNN

  11. Database Inference Conceptual Graphs Using Conceptual Graphs

    E-print Network

    Delugach, Harry S.

    Database Inference ­ Conceptual Graphs Using Conceptual Graphs To Represent Database Inference on conceptual graphs. The database inference problem is briefly described. Previous approaches are summarized problems. The classification of inference target classes and the use of conceptual graphs for database

  12. Quantum Inference on Bayesian Networks

    NASA Astrophysics Data System (ADS)

    Yoder, Theodore; Low, Guang Hao; Chuang, Isaac

    2014-03-01

    Because quantum physics is naturally probabilistic, it seems reasonable to expect physical systems to describe probabilities and their evolution in a natural fashion. Here, we use quantum computation to speedup sampling from a graphical probability model, the Bayesian network. A specialization of this sampling problem is approximate Bayesian inference, where the distribution on query variables is sampled given the values e of evidence variables. Inference is a key part of modern machine learning and artificial intelligence tasks, but is known to be NP-hard. Classically, a single unbiased sample is obtained from a Bayesian network on n variables with at most m parents per node in time ?(nmP(e) - 1 / 2) , depending critically on P(e) , the probability the evidence might occur in the first place. However, by implementing a quantum version of rejection sampling, we obtain a square-root speedup, taking ?(n2m P(e) -1/2) time per sample. The speedup is the result of amplitude amplification, which is proving to be broadly applicable in sampling and machine learning tasks. In particular, we provide an explicit and efficient circuit construction that implements the algorithm without the need for oracle access.

  13. Reliability of the Granger causality inference

    NASA Astrophysics Data System (ADS)

    Zhou, Douglas; Zhang, Yaoyu; Xiao, Yanyang; Cai, David

    2014-04-01

    How to characterize information flows in physical, biological, and social systems remains a major theoretical challenge. Granger causality (GC) analysis has been widely used to investigate information flow through causal interactions. We address one of the central questions in GC analysis, that is, the reliability of the GC evaluation and its implications for the causal structures extracted by this analysis. Our work reveals that the manner in which a continuous dynamical process is projected or coarse-grained to a discrete process has a profound impact on the reliability of the GC inference, and different sampling may potentially yield completely opposite inferences. This inference hazard is present for both linear and nonlinear processes. We emphasize that there is a hazard of reaching incorrect conclusions about network topologies, even including statistical (such as small-world or scale-free) properties of the networks, when GC analysis is blindly applied to infer the network topology. We demonstrate this using a small-world network for which a drastic loss of small-world attributes occurs in the reconstructed network using the standard GC approach. We further show how to resolve the paradox that the GC analysis seemingly becomes less reliable when more information is incorporated using finer and finer sampling. Finally, we present strategies to overcome these inference artifacts in order to obtain a reliable GC result.

  14. Causal Inference in Statistics: A Gentle Introduction

    E-print Network

    California at Los Angeles, University of

    from a perspective that is relatively new to the statistical literature. It is based on structuralCausal Inference in Statistics: A Gentle Introduction Judea Pearl Cognitive Systems Laboratory to Computing Science and Statistics, Proceedings TECHNICAL REPORT of Interface '01, Volume 33, 2001. R-289

  15. Protocols for Efficient Inference Communication Carl Andersen and Prithwish Basu

    E-print Network

    Yener, Aylin

    , respectively; we represent the inference relationship as xi yj ck. Our communication scenario is a semanticProtocols for Efficient Inference Communication Carl Andersen and Prithwish Basu Raytheon BBN, we describe our ini- tial work on a system for compressed two-way communication of simplified logical

  16. Visual Inference Programming

    NASA Technical Reports Server (NTRS)

    Wheeler, Kevin; Timucin, Dogan; Rabbette, Maura; Curry, Charles; Allan, Mark; Lvov, Nikolay; Clanton, Sam; Pilewskie, Peter

    2002-01-01

    The goal of visual inference programming is to develop a software framework data analysis and to provide machine learning algorithms for inter-active data exploration and visualization. The topics include: 1) Intelligent Data Understanding (IDU) framework; 2) Challenge problems; 3) What's new here; 4) Framework features; 5) Wiring diagram; 6) Generated script; 7) Results of script; 8) Initial algorithms; 9) Independent Component Analysis for instrument diagnosis; 10) Output sensory mapping virtual joystick; 11) Output sensory mapping typing; 12) Closed-loop feedback mu-rhythm control; 13) Closed-loop training; 14) Data sources; and 15) Algorithms. This paper is in viewgraph form.

  17. Synthesis of capillary pressure curves from post-stack seismic data with the use of intelligent estimators: A case study from the Iranian part of the South Pars gas field, Persian Gulf Basin

    NASA Astrophysics Data System (ADS)

    Golsanami, Naser; Kadkhodaie-Ilkhchi, Ali; Erfani, Amir

    2015-01-01

    Capillary pressure curves are important data for reservoir rock typing, analyzing pore throat distribution, determining height above free water level, and reservoir simulation. Laboratory experiments provide accurate data, however they are expensive, time-consuming and discontinuous through the reservoir intervals. The current study focuses on synthesizing artificial capillary pressure (Pc) curves from seismic attributes with the use of artificial intelligent systems including Artificial Neural Networks (ANNs), Fuzzy logic (FL) and Adaptive Neuro-Fuzzy Inference Systems (ANFISs). The synthetic capillary pressure curves were achieved by estimating pressure values at six mercury saturation points. These points correspond to mercury filled pore volumes of core samples (Hg-saturation) at 5%, 20%, 35%, 65%, 80%, and 90% saturations. To predict the synthetic Pc curve at each saturation point, various FL, ANFIS and ANN models were constructed. The varying neural network models differ in their training algorithm. Based on the performance function, the most accurately functioning models were selected as the final solvers to do the prediction process at each of the above-mentioned mercury saturation points. The constructed models were then tested at six depth points of the studied well which were already unforeseen by the models. The results show that the Fuzzy logic and neuro-fuzzy models were not capable of making reliable estimations, while the predictions from the ANN models were satisfyingly trustworthy. The obtained results showed a good agreement between the laboratory derived and synthetic capillary pressure curves. Finally, a 3D seismic cube was captured for which the required attributes were extracted and the capillary pressure cube was estimated by using the developed models. In the next step, the synthesized Pc cube was compared with the seismic cube and an acceptable correspondence was observed.

  18. Inferring Horizontal Gene Transfer

    PubMed Central

    Lassalle, Florent; Dessimoz, Christophe

    2015-01-01

    Horizontal or Lateral Gene Transfer (HGT or LGT) is the transmission of portions of genomic DNA between organisms through a process decoupled from vertical inheritance. In the presence of HGT events, different fragments of the genome are the result of different evolutionary histories. This can therefore complicate the investigations of evolutionary relatedness of lineages and species. Also, as HGT can bring into genomes radically different genotypes from distant lineages, or even new genes bearing new functions, it is a major source of phenotypic innovation and a mechanism of niche adaptation. For example, of particular relevance to human health is the lateral transfer of antibiotic resistance and pathogenicity determinants, leading to the emergence of pathogenic lineages [1]. Computational identification of HGT events relies upon the investigation of sequence composition or evolutionary history of genes. Sequence composition-based ("parametric") methods search for deviations from the genomic average, whereas evolutionary history-based ("phylogenetic") approaches identify genes whose evolutionary history significantly differs from that of the host species. The evaluation and benchmarking of HGT inference methods typically rely upon simulated genomes, for which the true history is known. On real data, different methods tend to infer different HGT events, and as a result it can be difficult to ascertain all but simple and clear-cut HGT events. PMID:26020646

  19. Inferring fitness landscapes.

    PubMed

    Shaw, Ruth G; Geyer, Charles J

    2010-09-01

    Since 1983, study of natural selection has relied heavily on multiple regression of fitness on the values for a set of traits via ordinary least squares (OLSs), as proposed by Lande and Arnold, to obtain an estimate of the quadratic relationship between fitness and the traits, the fitness surface. However, well-known statistical problems with this approach can affect inferences about selection. One key concern is that measures of lifetime fitness do not conform to a normal or any other standard sampling distribution, as needed to justify the usual statistical tests. Another is that OLS may yield an estimate of the sign of the fitness function's curvature that is opposite to the truth. We here show that the recently developed aster modeling approach, which explicitly models the components of fitness as the basis for inferences about lifetime fitness, eliminates these problems. We illustrate selection analysis via aster using simulated datasets involving five fitness components expressed in each of four years. We demonstrate that aster analysis yields accurate estimates of the fitness function in cases in which OLS misleads, as well as accurate confidence regions for directional selection gradients. Further, to evaluate selection when many traits are under consideration, we recommend model selection by information criteria and frequentist model averaging. PMID:20456492

  20. Circular inferences in schizophrenia.

    PubMed

    Jardri, Renaud; Denève, Sophie

    2013-11-01

    A considerable number of recent experimental and computational studies suggest that subtle impairments of excitatory to inhibitory balance or regulation are involved in many neurological and psychiatric conditions. The current paper aims to relate, specifically and quantitatively, excitatory to inhibitory imbalance with psychotic symptoms in schizophrenia. Considering that the brain constructs hierarchical causal models of the external world, we show that the failure to maintain the excitatory to inhibitory balance results in hallucinations as well as in the formation and subsequent consolidation of delusional beliefs. Indeed, the consequence of excitatory to inhibitory imbalance in a hierarchical neural network is equated to a pathological form of causal inference called 'circular belief propagation'. In circular belief propagation, bottom-up sensory information and top-down predictions are reverberated, i.e. prior beliefs are misinterpreted as sensory observations and vice versa. As a result, these predictions are counted multiple times. Circular inference explains the emergence of erroneous percepts, the patient's overconfidence when facing probabilistic choices, the learning of 'unshakable' causal relationships between unrelated events and a paradoxical immunity to perceptual illusions, which are all known to be associated with schizophrenia. PMID:24065721

  1. Structural inference for uncertain networks

    E-print Network

    Martin, Travis; Newman, M E J

    2015-01-01

    In the study of networked systems such as biological, technological, and social networks the available data are often uncertain. Rather than knowing the structure of a network exactly, we know the connections between nodes only with a certain probability. In this paper we develop methods for the analysis of such uncertain data, focusing particularly on the problem of community detection. We give a principled maximum-likelihood method for inferring community structure and demonstrate how the results can be used to make improved estimates of the true structure of the network. Using computer-generated benchmark networks we demonstrate that our methods are able to reconstruct known communities more accurately than previous approaches based on data thresholding. We also give an example application to the detection of communities in a protein-protein interaction network.

  2. Bayes factors and multimodel inference

    USGS Publications Warehouse

    Link, W.A.; Barker, R.J.

    2009-01-01

    Multimodel inference has two main themes: model selection, and model averaging. Model averaging is a means of making inference conditional on a model set, rather than on a selected model, allowing formal recognition of the uncertainty associated with model choice. The Bayesian paradigm provides a natural framework for model averaging, and provides a context for evaluation of the commonly used AIC weights. We review Bayesian multimodel inference, noting the importance of Bayes factors. Noting the sensitivity of Bayes factors to the choice of priors on parameters, we define and propose nonpreferential priors as offering a reasonable standard for objective multimodel inference.

  3. Composable Probabilistic Inference with Blaise

    E-print Network

    Bonawitz, Keith A

    2008-07-23

    Probabilistic inference provides a unified, systematic framework for specifying and solving these problems. Recent work has demonstrated the great value of probabilistic models defined over complex, structured domains. ...

  4. A noninvasive method for coronary artery diseases diagnosis using a clinically-interpretable fuzzy rule-based system

    PubMed Central

    Marateb, Hamid Reza; Goudarzi, Sobhan

    2015-01-01

    Background: Coronary heart diseases/coronary artery diseases (CHDs/CAD), the most common form of cardiovascular disease (CVD), are a major cause for death and disability in developing/developed countries. CAD risk factors could be detected by physicians to prevent the CAD occurrence in the near future. Invasive coronary angiography, a current diagnosis method, is costly and associated with morbidity and mortality in CAD patients. The aim of this study was to design a computer-based noninvasive CAD diagnosis system with clinically interpretable rules. Materials and Methods: In this study, the Cleveland CAD dataset from the University of California UCI (Irvine) was used. The interval-scale variables were discretized, with cut points taken from the literature. A fuzzy rule-based system was then formulated based on a neuro-fuzzy classifier (NFC) whose learning procedure was speeded up by the scaled conjugate gradient algorithm. Two feature selection (FS) methods, multiple logistic regression (MLR) and sequential FS, were used to reduce the required attributes. The performance of the NFC (without/with FS) was then assessed in a hold-out validation framework. Further cross-validation was performed on the best classifier. Results: In this dataset, 16 complete attributes along with the binary CHD diagnosis (gold standard) for 272 subjects (68% male) were analyzed. MLR + NFC showed the best performance. Its overall sensitivity, specificity, accuracy, type I error (?) and statistical power were 79%, 89%, 84%, 0.1 and 79%, respectively. The selected features were “age and ST/heart rate slope categories,” “exercise-induced angina status,” fluoroscopy, and thallium-201 stress scintigraphy results. Conclusion: The proposed method showed “substantial agreement” with the gold standard. This algorithm is thus, a promising tool for screening CAD patients. PMID:26109965

  5. BIE: Bayesian Inference Engine

    NASA Astrophysics Data System (ADS)

    Weinberg, Martin D.

    2013-12-01

    The Bayesian Inference Engine (BIE) is an object-oriented library of tools written in C++ designed explicitly to enable Bayesian update and model comparison for astronomical problems. To facilitate "what if" exploration, BIE provides a command line interface (written with Bison and Flex) to run input scripts. The output of the code is a simulation of the Bayesian posterior distribution from which summary statistics e.g. by taking moments, or determine confidence intervals and so forth, can be determined. All of these quantities are fundamentally integrals and the Markov Chain approach produces variates heta distributed according to P( heta|D) so moments are trivially obtained by summing of the ensemble of variates.

  6. Training through European Research Training Networks -Analysis of IMAGETOX

    E-print Network

    Gini, Giuseppina

    substances. This Regulation consists of three main parts: data collection, priority setting and risk predictive methods for priority setting and, to a lesser extent, for risk assessment, within the framework laboratory" based on NIKE, a neuro-fuzzy hybrid system. II. THE RESEARCH THEME: QSAR AND ECOTOXICOLOGY We

  7. Improving Inferences from Multiple Methods.

    ERIC Educational Resources Information Center

    Shotland, R. Lance; Mark, Melvin M.

    1987-01-01

    Multiple evaluation methods (MEMs) can cause an inferential challenge, although there are strategies to strengthen inferences. Practical and theoretical issues involved in the use by social scientists of MEMs, three potential problems in drawing inferences from MEMs, and short- and long-term strategies for alleviating these problems are outlined.…

  8. Causal Inference in Retrospective Studies.

    ERIC Educational Resources Information Center

    Holland, Paul W.; Rubin, Donald B.

    1988-01-01

    The problem of drawing causal inferences from retrospective case-controlled studies is considered. A model for causal inference in prospective studies is applied to retrospective studies. Limitations of case-controlled studies are formulated concerning relevant parameters that can be estimated in such studies. A coffee-drinking/myocardial…

  9. Distributed Inference and Query Processing for RFID Tracking and Monitoring

    E-print Network

    Cao, Zhao; Diao, Yanlei; Shenoy, Prashant

    2011-01-01

    In this paper, we present the design of a scalable, distributed stream processing system for RFID tracking and monitoring. Since RFID data lacks containment and location information that is key to query processing, we propose to combine location and containment inference with stream query processing in a single architecture, with inference as an enabling mechanism for high-level query processing. We further consider challenges in instantiating such a system in large distributed settings and design techniques for distributed inference and query processing. Our experimental results, using both real-world data and large synthetic traces, demonstrate the accuracy, efficiency, and scalability of our proposed techniques.

  10. A Model for Multimodal Representation and Inference1 Luis Pineda and Gabriela Garza

    E-print Network

    Pineda, Luis

    A Model for Multimodal Representation and Inference1 Luis Pineda and Gabriela Garza Department applications of a theory for representation and inference in multimodal scenarios is presented. The theory a multimodal system of representation and inference based on this view of modality is described. First, a brief

  11. Quantum-Like Representation of Non-Bayesian Inference

    NASA Astrophysics Data System (ADS)

    Asano, M.; Basieva, I.; Khrennikov, A.; Ohya, M.; Tanaka, Y.

    2013-01-01

    This research is related to the problem of "irrational decision making or inference" that have been discussed in cognitive psychology. There are some experimental studies, and these statistical data cannot be described by classical probability theory. The process of decision making generating these data cannot be reduced to the classical Bayesian inference. For this problem, a number of quantum-like coginitive models of decision making was proposed. Our previous work represented in a natural way the classical Bayesian inference in the frame work of quantum mechanics. By using this representation, in this paper, we try to discuss the non-Bayesian (irrational) inference that is biased by effects like the quantum interference. Further, we describe "psychological factor" disturbing "rationality" as an "environment" correlating with the "main system" of usual Bayesian inference.

  12. Efficient Bayesian inference for ARFIMA processes

    NASA Astrophysics Data System (ADS)

    Graves, T.; Gramacy, R. B.; Franzke, C. L. E.; Watkins, N. W.

    2015-03-01

    Many geophysical quantities, like atmospheric temperature, water levels in rivers, and wind speeds, have shown evidence of long-range dependence (LRD). LRD means that these quantities experience non-trivial temporal memory, which potentially enhances their predictability, but also hampers the detection of externally forced trends. Thus, it is important to reliably identify whether or not a system exhibits LRD. In this paper we present a modern and systematic approach to the inference of LRD. Rather than Mandelbrot's fractional Gaussian noise, we use the more flexible Autoregressive Fractional Integrated Moving Average (ARFIMA) model which is widely used in time series analysis, and of increasing interest in climate science. Unlike most previous work on the inference of LRD, which is frequentist in nature, we provide a systematic treatment of Bayesian inference. In particular, we provide a new approximate likelihood for efficient parameter inference, and show how nuisance parameters (e.g. short memory effects) can be integrated over in order to focus on long memory parameters, and hypothesis testing more directly. We illustrate our new methodology on the Nile water level data, with favorable comparison to the standard estimators.

  13. Inference in {open_quotes}poor{close_quotes} languages

    SciTech Connect

    Petrov, S.

    1996-12-31

    Languages with a solvable implication problem but without complete and consistent systems of inference rules ({open_quote}poor{close_quote} languages) are considered. The problem of existence of a finite, complete, and consistent inference rule system for a {open_quotes}poor{close_quotes} language is stated independently of the language or the rule syntax. Several properties of the problem are proved. An application of the results to the language of join dependencies is given.

  14. INFERRING THE ECCENTRICITY DISTRIBUTION

    SciTech Connect

    Hogg, David W.; Bovy, Jo; Myers, Adam D.

    2010-12-20

    Standard maximum-likelihood estimators for binary-star and exoplanet eccentricities are biased high, in the sense that the estimated eccentricity tends to be larger than the true eccentricity. As with most non-trivial observables, a simple histogram of estimated eccentricities is not a good estimate of the true eccentricity distribution. Here, we develop and test a hierarchical probabilistic method for performing the relevant meta-analysis, that is, inferring the true eccentricity distribution, taking as input the likelihood functions for the individual star eccentricities, or samplings of the posterior probability distributions for the eccentricities (under a given, uninformative prior). The method is a simple implementation of a hierarchical Bayesian model; it can also be seen as a kind of heteroscedastic deconvolution. It can be applied to any quantity measured with finite precision-other orbital parameters, or indeed any astronomical measurements of any kind, including magnitudes, distances, or photometric redshifts-so long as the measurements have been communicated as a likelihood function or a posterior sampling.

  15. Declarative Modeling and Bayesian Inference of Dark Matter Halos

    E-print Network

    Kronberger, Gabriel

    2013-01-01

    Probabilistic programming allows specification of probabilistic models in a declarative manner. Recently, several new software systems and languages for probabilistic programming have been developed on the basis of newly developed and improved methods for approximate inference in probabilistic models. In this contribution a probabilistic model for an idealized dark matter localization problem is described. We first derive the probabilistic model for the inference of dark matter locations and masses, and then show how this model can be implemented using BUGS and Infer.NET, two software systems for probabilistic programming. Finally, the different capabilities of both systems are discussed. The presented dark matter model includes mainly non-conjugate factors, thus, it is difficult to implement this model with Infer.NET.

  16. Inferring Diversity: Life After Shannon

    E-print Network

    Giffin, Adom

    2007-01-01

    The diversity of a community that cannot be fully counted must be inferred. The two preeminent inference methods are the MaxEnt method, which uses information in the form of constraints and Bayes' rule which uses information in the form of data. It has been shown that these two methods are special cases of the method of Maximum (relative) Entropy (ME). We demonstrate how this method can be used as a measure of diversity that not only reproduces the features of Shannon's index but exceeds them by allowing more types of information to be included in the inference. A specific example is solved in detail.

  17. Inferring Task Structure From Data Paul E. Utgoff

    E-print Network

    Jensen, David

    to infer task structure for making coordina- tion decisions for multi-agent systems. The presence is to learn. One such modeling problem comes from the study of multi-agent systems. For a group of agents-existing system that is being incorporated into a new multi- agent system. Thus, learning is a valuable capability

  18. Bayesian Inference: with ecological applications

    USGS Publications Warehouse

    Link, William A.; Barker, Richard J.

    2010-01-01

    This text provides a mathematically rigorous yet accessible and engaging introduction to Bayesian inference with relevant examples that will be of interest to biologists working in the fields of ecology, wildlife management and environmental studies as well as students in advanced undergraduate statistics.. This text opens the door to Bayesian inference, taking advantage of modern computational efficiencies and easily accessible software to evaluate complex hierarchical models.

  19. Active inference, communication and hermeneutics?

    PubMed Central

    Friston, Karl J.; Frith, Christopher D.

    2015-01-01

    Hermeneutics refers to interpretation and translation of text (typically ancient scriptures) but also applies to verbal and non-verbal communication. In a psychological setting it nicely frames the problem of inferring the intended content of a communication. In this paper, we offer a solution to the problem of neural hermeneutics based upon active inference. In active inference, action fulfils predictions about how we will behave (e.g., predicting we will speak). Crucially, these predictions can be used to predict both self and others – during speaking and listening respectively. Active inference mandates the suppression of prediction errors by updating an internal model that generates predictions – both at fast timescales (through perceptual inference) and slower timescales (through perceptual learning). If two agents adopt the same model, then – in principle – they can predict each other and minimise their mutual prediction errors. Heuristically, this ensures they are singing from the same hymn sheet. This paper builds upon recent work on active inference and communication to illustrate perceptual learning using simulated birdsongs. Our focus here is the neural hermeneutics implicit in learning, where communication facilitates long-term changes in generative models that are trying to predict each other. In other words, communication induces perceptual learning and enables others to (literally) change our minds and vice versa. PMID:25957007

  20. Active inference, communication and hermeneutics.

    PubMed

    Friston, Karl J; Frith, Christopher D

    2015-07-01

    Hermeneutics refers to interpretation and translation of text (typically ancient scriptures) but also applies to verbal and non-verbal communication. In a psychological setting it nicely frames the problem of inferring the intended content of a communication. In this paper, we offer a solution to the problem of neural hermeneutics based upon active inference. In active inference, action fulfils predictions about how we will behave (e.g., predicting we will speak). Crucially, these predictions can be used to predict both self and others--during speaking and listening respectively. Active inference mandates the suppression of prediction errors by updating an internal model that generates predictions--both at fast timescales (through perceptual inference) and slower timescales (through perceptual learning). If two agents adopt the same model, then--in principle--they can predict each other and minimise their mutual prediction errors. Heuristically, this ensures they are singing from the same hymn sheet. This paper builds upon recent work on active inference and communication to illustrate perceptual learning using simulated birdsongs. Our focus here is the neural hermeneutics implicit in learning, where communication facilitates long-term changes in generative models that are trying to predict each other. In other words, communication induces perceptual learning and enables others to (literally) change our minds and vice versa. PMID:25957007

  1. Drug target inference through pathway analysis of genomics data

    PubMed Central

    Ma, Haisu; Zhao, Hongyu

    2013-01-01

    Statistical modeling coupled with bioinformatics is commonly used for drug discovery. Although there exist many approaches for single target based drug design and target inference, recent years have seen a paradigm shift to system-level pharmacological research. Pathway analysis of genomics data represents one promising direction for computational inference of drug targets. This article aims at providing a comprehensive review on the evolving issues is this field, covering methodological developments, their pros and cons, as well as future research directions. PMID:23369829

  2. Children's Category-Based Inferences Affect Classification

    ERIC Educational Resources Information Center

    Ross, Brian H.; Gelman, Susan A.; Rosengren, Karl S.

    2005-01-01

    Children learn many new categories and make inferences about these categories. Much work has examined how children make inferences on the basis of category knowledge. However, inferences may also affect what is learned about a category. Four experiments examine whether category-based inferences during category learning influence category knowledge…

  3. BAMBI: Blind Accelerated Multimodal Bayesian Inference

    NASA Astrophysics Data System (ADS)

    Graff, Philip; Feroz, Farhan

    2013-12-01

    BAMBI (Blind Accelerated Multimodal Bayesian Inference) is a Bayesian inference engine that combines the benefits of SkyNet with MultiNest. It operated by simultaneously performing Bayesian inference using MultiNest and learning the likelihood function using SkyNet. Once SkyNet has learnt the likelihood to sufficient accuracy, inference finishes almost instantaneously.

  4. Multistability and Perceptual Inference

    E-print Network

    Gershman, Samuel J.

    Ambiguous images present a challenge to the visual system: How can uncertainty about the causes of visual inputs be represented when there are multiple equally plausible causes? A Bayesian ideal observer should represent ...

  5. Statistical inference and string theory

    NASA Astrophysics Data System (ADS)

    Heckman, Jonathan J.

    2015-09-01

    In this paper, we expose some surprising connections between string theory and statistical inference. We consider a large collective of agents sweeping out a family of nearby statistical models for an M-dimensional manifold of statistical fitting parameters. When the agents making nearby inferences align along a d-dimensional grid, we find that the pooled probability that the collective reaches a correct inference is the partition function of a nonlinear sigma model in d dimensions. Stability under perturbations to the original inference scheme requires the agents of the collective to distribute along two dimensions. Conformal invariance of the sigma model corresponds to the condition of a stable inference scheme, directly leading to the Einstein field equations for classical gravity. By summing over all possible arrangements of the agents in the collective, we reach a string theory. We also use this perspective to quantify how much an observer can hope to learn about the internal geometry of a superstring compactification. Finally, we present some brief speculative remarks on applications to the AdS/CFT correspondence and Lorentzian signature space-times.

  6. Inferring Trust Based on Similarity with TILLIT

    NASA Astrophysics Data System (ADS)

    Tavakolifard, Mozhgan; Herrmann, Peter; Knapskog, Svein J.

    A network of people having established trust relations and a model for propagation of related trust scores are fundamental building blocks in many of today’s most successful e-commerce and recommendation systems. However, the web of trust is often too sparse to predict trust values between non-familiar people with high accuracy. Trust inferences are transitive associations among users in the context of an underlying social network and may provide additional information to alleviate the consequences of the sparsity and possible cold-start problems. Such approaches are helpful, provided that a complete trust path exists between the two users. An alternative approach to the problem is advocated in this paper. Based on collaborative filtering one can exploit the like-mindedness resp. similarity of individuals to infer trust to yet unknown parties which increases the trust relations in the web. For instance, if one knows that with respect to a specific property, two parties are trusted alike by a large number of different trusters, one can assume that they are similar. Thus, if one has a certain degree of trust to the one party, one can safely assume a very similar trustworthiness of the other one. In an attempt to provide high quality recommendations and proper initial trust values even when no complete trust propagation path or user profile exists, we propose TILLIT — a model based on combination of trust inferences and user similarity. The similarity is derived from the structure of the trust graph and users’ trust behavior as opposed to other collaborative-filtering based approaches which use ratings of items or user’s profile. We describe an algorithm realizing the approach based on a combination of trust inferences and user similarity, and validate the algorithm using a real large-scale data-set.

  7. Inferring biochemical reaction pathways: the case of the gemcitabine pharmacokinetics

    PubMed Central

    2012-01-01

    Background The representation of a biochemical system as a network is the precursor of any mathematical model of the processes driving the dynamics of that system. Pharmacokinetics uses mathematical models to describe the interactions between drug, and drug metabolites and targets and through the simulation of these models predicts drug levels and/or dynamic behaviors of drug entities in the body. Therefore, the development of computational techniques for inferring the interaction network of the drug entities and its kinetic parameters from observational data is raising great interest in the scientific community of pharmacologists. In fact, the network inference is a set of mathematical procedures deducing the structure of a model from the experimental data associated to the nodes of the network of interactions. In this paper, we deal with the inference of a pharmacokinetic network from the concentrations of the drug and its metabolites observed at discrete time points. Results The method of network inference presented in this paper is inspired by the theory of time-lagged correlation inference with regard to the deduction of the interaction network, and on a maximum likelihood approach with regard to the estimation of the kinetic parameters of the network. Both network inference and parameter estimation have been designed specifically to identify systems of biotransformations, at the biochemical level, from noisy time-resolved experimental data. We use our inference method to deduce the metabolic pathway of the gemcitabine. The inputs to our inference algorithm are the experimental time series of the concentration of gemcitabine and its metabolites. The output is the set of reactions of the metabolic network of the gemcitabine. Conclusions Time-lagged correlation based inference pairs up to a probabilistic model of parameter inference from metabolites time series allows the identification of the microscopic pharmacokinetics and pharmacodynamics of a drug with a minimal a priori knowledge. In fact, the inference model presented in this paper is completely unsupervised. It takes as input the time series of the concetrations of the parent drug and its metabolites. The method, applied to the case study of the gemcitabine pharmacokinetics, shows good accuracy and sensitivity. PMID:22640931

  8. Inferring Network Topology from Complex Dynamics

    E-print Network

    Srinivas Gorur Shandilya; Marc Timme

    2010-07-09

    Inferring network topology from dynamical observations is a fundamental problem pervading research on complex systems. Here, we present a simple, direct method to infer the structural connection topology of a network, given an observation of one collective dynamical trajectory. The general theoretical framework is applicable to arbitrary network dynamical systems described by ordinary differential equations. No interference (external driving) is required and the type of dynamics is not restricted in any way. In particular, the observed dynamics may be arbitrarily complex; stationary, invariant or transient; synchronous or asynchronous and chaotic or periodic. Presupposing a knowledge of the functional form of the dynamical units and of the coupling functions between them, we present an analytical solution to the inverse problem of finding the network topology. Robust reconstruction is achieved in any sufficiently long generic observation of the system. We extend our method to simultaneously reconstruct both the entire network topology and all parameters appearing linear in the system's equations of motion. Reconstruction of network topology and system parameters is viable even in the presence of substantial external noise.

  9. How forgetting aids heuristic inference.

    PubMed

    Schooler, Lael J; Hertwig, Ralph

    2005-07-01

    Some theorists, ranging from W. James (1890) to contemporary psychologists, have argued that forgetting is the key to proper functioning of memory. The authors elaborate on the notion of beneficial forgetting by proposing that loss of information aids inference heuristics that exploit mnemonic information. To this end, the authors bring together 2 research programs that take an ecological approach to studying cognition. Specifically, they implement fast and frugal heuristics within the ACT-R cognitive architecture. Simulations of the recognition heuristic, which relies on systematic failures of recognition to infer which of 2 objects scores higher on a criterion value, demonstrate that forgetting can boost accuracy by increasing the chances that only 1 object is recognized. Simulations of the fluency heuristic, which arrives at the same inference on the basis of the speed with which objects are recognized, indicate that forgetting aids the discrimination between the objects' recognition speeds. PMID:16060753

  10. Model Inference with Reference Priors

    E-print Network

    Maurizio Pierini; Harrison Prosper; Sezen Sekmen; Maria Spiropulu

    2011-07-14

    We describe the application of model inference based on reference priors to two concrete examples in high energy physics: the determination of the CKM matrix parameters rhobar and etabar and the determination of the parameters m_0 and m_1/2 in a simplified version of the CMSSM SUSY model. We show how a 1-dimensional reference posterior can be mapped to the n-dimensional (n-D) parameter space of the given class of models, under a minimal set of conditions on the n-D function. This reference-based function can be used as a prior for the next iteration of inference, using Bayes' theorem recursively.

  11. Inference for interacting linear waves in ordered and random media

    NASA Astrophysics Data System (ADS)

    Tyagi, P.; Pagnani, A.; Antenucci, F.; Ibánez Berganza, M.; Leuzzi, L.

    2015-05-01

    A statistical inference method is developed and tested for pairwise interacting systems whose degrees of freedom are continuous angular variables, such as planar spins in magnetic systems or wave phases in optics and acoustics. We investigate systems with both deterministic and quenched disordered couplings on two extreme topologies: complete and sparse graphs. To match further applications in optics also complex couplings and external fields are considered and general inference formulas are derived for real and imaginary parts of Hermitian coupling matrices from real and imaginary parts of complex correlation functions. The whole procedure is, eventually, tested on numerically generated correlation functions and local magnetizations by means of Monte Carlo simulations.

  12. The ventral pallidum and orbitofrontal cortex support food pleasantness inferences

    PubMed Central

    Simmons, W. Kyle; Rapuano, Kristina M.; Ingeholm, John E.; Avery, Jason; Kallman, Seth; Hall, Kevin D.; Martin, Alex

    2013-01-01

    Food advertisements often promote choices that are driven by inferences about the hedonic pleasures of eating a particular food. Given the individual and public health consequences of obesity, it is critical to address unanswered questions about the specific neural systems underlying these hedonic inferences. For example, although regions such as the orbitofrontal cortex (OFC) are frequently observed to respond more to pleasant food images than less hedonically pleasing stimuli, one important hedonic brain region in particular has largely remained conspicuously absent among human studies of hedonic response to food images. Based on rodent research demonstrating that activity in the ventral pallidum underlies the hedonic pleasures experienced upon eating food rewards, one might expect that activity in this important ‘hedonic hotspot’ might also track inferred food pleasantness. To date, however, no human studies have assessed this question. We thus asked human subjects to undergo fMRI and make item-by-item ratings of how pleasant it would be to eat particular visually perceived foods. Activity in the ventral pallidum was strongly modulated with pleasantness inferences. Additionally, activity within a region of the orbitofrontal cortex that tracks the pleasantness of tastes was also modulated with inferred pleasantness. Importantly, the reliability of these findings is demonstrated by their replication when we repeated the experiment at a new site with new subjects. These two experiments demonstrate that the ventral pallidum, in addition to the OFC, plays a central role in the moment-to-moment hedonic inferences that influence food-related decision-making. PMID:23397317

  13. Perceptual Inference and Autistic Traits

    ERIC Educational Resources Information Center

    Skewes, Joshua C; Jegindø, Else-Marie; Gebauer, Line

    2015-01-01

    Autistic people are better at perceiving details. Major theories explain this in terms of bottom-up sensory mechanisms or in terms of top-down cognitive biases. Recently, it has become possible to link these theories within a common framework. This framework assumes that perception is implicit neural inference, combining sensory evidence with…

  14. Science Shorts: Observation versus Inference

    ERIC Educational Resources Information Center

    Leager, Craig R.

    2008-01-01

    When you observe something, how do you know for sure what you are seeing, feeling, smelling, or hearing? Asking students to think critically about their encounters with the natural world will help to strengthen their understanding and application of the science-process skills of observation and inference. In the following lesson, students make…

  15. Approximate inference in graphical models

    E-print Network

    Hennig, Philipp

    2011-02-08

    of the Inference Group at the Cavendish Lab- oratory in Cambridge for their support during the preparation of this thesis. In particular, I am grateful to Carl Scheffler, Philip Sterne, Keith Vertanen, Emli- Mari Nel, Tamara Broderick, Oliver Stegle and Christian...

  16. How Forgetting Aids Heuristic Inference

    ERIC Educational Resources Information Center

    Schooler, Lael J.; Hertwig, Ralph

    2005-01-01

    Some theorists, ranging from W. James (1890) to contemporary psychologists, have argued that forgetting is the key to proper functioning of memory. The authors elaborate on the notion of beneficial forgetting by proposing that loss of information aids inference heuristics that exploit mnemonic information. To this end, the authors bring together 2…

  17. Sample Size and Correlational Inference

    ERIC Educational Resources Information Center

    Anderson, Richard B.; Doherty, Michael E.; Friedrich, Jeff C.

    2008-01-01

    In 4 studies, the authors examined the hypothesis that the structure of the informational environment makes small samples more informative than large ones for drawing inferences about population correlations. The specific purpose of the studies was to test predictions arising from the signal detection simulations of R. B. Anderson, M. E. Doherty,…

  18. The mechanisms of temporal inference

    NASA Technical Reports Server (NTRS)

    Fox, B. R.; Green, S. R.

    1987-01-01

    The properties of a temporal language are determined by its constituent elements: the temporal objects which it can represent, the attributes of those objects, the relationships between them, the axioms which define the default relationships, and the rules which define the statements that can be formulated. The methods of inference which can be applied to a temporal language are derived in part from a small number of axioms which define the meaning of equality and order and how those relationships can be propagated. More complex inferences involve detailed analysis of the stated relationships. Perhaps the most challenging area of temporal inference is reasoning over disjunctive temporal constraints. Simple forms of disjunction do not sufficiently increase the expressive power of a language while unrestricted use of disjunction makes the analysis NP-hard. In many cases a set of disjunctive constraints can be converted to disjunctive normal form and familiar methods of inference can be applied to the conjunctive sub-expressions. This process itself is NP-hard but it is made more tractable by careful expansion of a tree-structured search space.

  19. Degradation monitoring using probabilistic inference

    NASA Astrophysics Data System (ADS)

    Alpay, Bulent

    In order to increase safety and improve economy and performance in a nuclear power plant (NPP), the source and extent of component degradations should be identified before failures and breakdowns occur. It is also crucial for the next generation of NPPs, which are designed to have a long core life and high fuel burnup to have a degradation monitoring system in order to keep the reactor in a safe state, to meet the designed reactor core lifetime and to optimize the scheduled maintenance. Model-based methods are based on determining the inconsistencies between the actual and expected behavior of the plant, and use these inconsistencies for detection and diagnostics of degradations. By defining degradation as a random abrupt change from the nominal to a constant degraded state of a component, we employed nonlinear filtering techniques based on state/parameter estimation. We utilized a Bayesian recursive estimation formulation in the sequential probabilistic inference framework and constructed a hidden Markov model to represent a general physical system. By addressing the problem of a filter's inability to estimate an abrupt change, which is called the oblivious filter problem in nonlinear extensions of Kalman filtering, and the sample impoverishment problem in particle filtering, we developed techniques to modify filtering algorithms by utilizing additional data sources to improve the filter's response to this problem. We utilized a reliability degradation database that can be constructed from plant specific operational experience and test and maintenance reports to generate proposal densities for probable degradation modes. These are used in a multiple hypothesis testing algorithm. We then test samples drawn from these proposal densities with the particle filtering estimates based on the Bayesian recursive estimation formulation with the Metropolis Hastings algorithm, which is a well-known Markov chain Monte Carlo method (MCMC). This multiple hypothesis testing algorithm using MCMC in particle filtering helps the filter to explore the state space more effectively in the direction of the degradations. We extended this algorithm for degradation detection and isolation to complete the degradation monitoring framework. We successfully tested our algorithms in degradation monitoring of balance of plant of a boiling water reactor.

  20. An algebra-based method for inferring gene regulatory networks

    PubMed Central

    2014-01-01

    Background The inference of gene regulatory networks (GRNs) from experimental observations is at the heart of systems biology. This includes the inference of both the network topology and its dynamics. While there are many algorithms available to infer the network topology from experimental data, less emphasis has been placed on methods that infer network dynamics. Furthermore, since the network inference problem is typically underdetermined, it is essential to have the option of incorporating into the inference process, prior knowledge about the network, along with an effective description of the search space of dynamic models. Finally, it is also important to have an understanding of how a given inference method is affected by experimental and other noise in the data used. Results This paper contains a novel inference algorithm using the algebraic framework of Boolean polynomial dynamical systems (BPDS), meeting all these requirements. The algorithm takes as input time series data, including those from network perturbations, such as knock-out mutant strains and RNAi experiments. It allows for the incorporation of prior biological knowledge while being robust to significant levels of noise in the data used for inference. It uses an evolutionary algorithm for local optimization with an encoding of the mathematical models as BPDS. The BPDS framework allows an effective representation of the search space for algebraic dynamic models that improves computational performance. The algorithm is validated with both simulated and experimental microarray expression profile data. Robustness to noise is tested using a published mathematical model of the segment polarity gene network in Drosophila melanogaster. Benchmarking of the algorithm is done by comparison with a spectrum of state-of-the-art network inference methods on data from the synthetic IRMA network to demonstrate that our method has good precision and recall for the network reconstruction task, while also predicting several of the dynamic patterns present in the network. Conclusions Boolean polynomial dynamical systems provide a powerful modeling framework for the reverse engineering of gene regulatory networks, that enables a rich mathematical structure on the model search space. A C++ implementation of the method, distributed under LPGL license, is available, together with the source code, at http://www.paola-vera-licona.net/Software/EARevEng/REACT.html. PMID:24669835

  1. Inferring heuristic classification hierarchies from natural language input

    NASA Technical Reports Server (NTRS)

    Hull, Richard; Gomez, Fernando

    1993-01-01

    A methodology for inferring hierarchies representing heuristic knowledge about the check out, control, and monitoring sub-system (CCMS) of the space shuttle launch processing system from natural language input is explained. Our method identifies failures explicitly and implicitly described in natural language by domain experts and uses those descriptions to recommend classifications for inclusion in the experts' heuristic hierarchies.

  2. Visually Customizing Inference Rules About Apples and Oranges Margaret Burnett # and Martin Erwig

    E-print Network

    Erwig, Martin

    Visually Customizing Inference Rules About Apples and Oranges Margaret Burnett # and Martin Erwig, the system can guess that, for example, the entries of column B are apples. The system confirms its guesses infers that the unit for the cell B5 is apples since the formula adds two numbers which are of unit ap

  3. Inference and Uncertainty from Models and Multiple Observations (Invited)

    NASA Astrophysics Data System (ADS)

    Gattiker, J.

    2013-12-01

    Model-supported inference with uncertainty generally involves examples of observations from some system of interest and a model of that system, for example, Earth-system observations and climate models. Comparison between the model and the observations allow inferences to be made about various aspects of the model and system. Observation error is always a source of uncertainty, and additional uncertainty comes from two sources related to the model: unknown settings of parameters controlling the model behavior, and an unknown discrepancy between the model and the system. There are several sorts of inference that can be targeted in this framework, but from the viewpoint of uncertainty quantification they involve construction of a statistical model that relates these three sources of uncertainty to produce an estimate involving each. These can then be used directly, such as in examining the parameter uncertainty or model discrepancy, or employed in further inferences such as sensitivity analysis or analysis of uncertainty in model-based predictions of the system. This talk examines the combination of evidence in the common case that the system observations move beyond assumptions of simple error models. This is typically the case when comparing varied observations to domains of model response that have distinct structural error. The talk motivates a hierarchical model on parameter settings corresponding to observation domains, and the implications to projected uncertainty. This is discussed in two cases of model analysis: one in model parameter estimation, and another in the assessment of climate sensitivity.

  4. Migration of the Pee Dee River system inferred from ancestral paleochannels underlying the South Carolina Grand Strand and Long Bay inner shelf

    USGS Publications Warehouse

    Baldwin, W.E.; Morton, R.A.; Putney, T.R.; Katuna, M.P.; Harris, M.S.; Gayes, P.T.; Driscoll, N.W.; Denny, J.F.; Schwab, W.C.

    2006-01-01

    Several generations of the ancestral Pee Dee River system have been mapped beneath the South Carolina Grand Strand coastline and adjacent Long Bay inner shelf. Deep boreholes onshore and high-resolution seismic-reflection data offshore allow for reconstruction of these paleochannels, which formed during glacial lowstands, when the Pee Dee River system incised subaerially exposed coastal-plain and continental-shelf strata. Paleochannel groups, representing different generations of the system, decrease in age to the southwest, where the modern Pee Dee River merges with several coastal-plain tributaries at Winyah Bay, the southern terminus of Long Bay. Positions of the successive generational groups record a regional, southwestward migration of the river system that may have initiated during the late Pliocene. The migration was primarily driven by barrier-island deposition, resulting from the interaction of fluvial and shoreline processes during eustatic highstands. Structurally driven, subsurface paleotopography associated with the Mid-Carolina Platform High has also indirectly assisted in forcing this migration. These results provide a better understanding of the evolution of the region and help explain the lack of mobile sediment on the Long Bay inner shelf. Migration of the river system caused a profound change in sediment supply during the late Pleistocene. The abundant fluvial source that once fed sand-rich barrier islands was cut off and replaced with a limited source, supplied by erosion and reworking of former coastal deposits exposed at the shore and on the inner shelf.

  5. F-OWL: An Inference Engine for Semantic Web

    NASA Technical Reports Server (NTRS)

    Zou, Youyong; Finin, Tim; Chen, Harry

    2004-01-01

    Understanding and using the data and knowledge encoded in semantic web documents requires an inference engine. F-OWL is an inference engine for the semantic web language OWL language based on F-logic, an approach to defining frame-based systems in logic. F-OWL is implemented using XSB and Flora-2 and takes full advantage of their features. We describe how F-OWL computes ontology entailment and compare it with other description logic based approaches. We also describe TAGA, a trading agent environment that we have used as a test bed for F-OWL and to explore how multiagent systems can use semantic web concepts and technology.

  6. Bayesian time series models and scalable inference

    E-print Network

    Johnson, Matthew James, Ph. D. Massachusetts Institute of Technology

    2014-01-01

    With large and growing datasets and complex models, there is an increasing need for scalable Bayesian inference. We describe two lines of work to address this need. In the first part, we develop new algorithms for inference ...

  7. Thermal noise for quantum state inference

    E-print Network

    D. Mogilevtsev; V. S. Shchesnovich; N. Korolkova

    2013-02-15

    In this work we describe a simple and efficient scheme for inference of photon number distribution by adding variable thermal noise to the signal. The inference remains feasible even if the scheme parameters are subject to random dynamical change.

  8. Toddlers infer unobserved causes for spontaneous events

    E-print Network

    Muentener, Paul

    Previous research suggests that children infer the presence of unobserved causes when objects appear to move spontaneously. Are such inferences limited to motion events or do children assume that unexplained physical events ...

  9. Automated adaptive inference of phenomenological dynamical models.

    PubMed

    Daniels, Bryan C; Nemenman, Ilya

    2015-01-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved. PMID:26293508

  10. Automated adaptive inference of phenomenological dynamical models

    NASA Astrophysics Data System (ADS)

    Daniels, Bryan C.; Nemenman, Ilya

    2015-08-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved.

  11. Automated adaptive inference of phenomenological dynamical models

    PubMed Central

    Daniels, Bryan C.; Nemenman, Ilya

    2015-01-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved. PMID:26293508

  12. Inferring epigenetic dynamics from kin correlations.

    PubMed

    Hormoz, Sahand; Desprat, Nicolas; Shraiman, Boris I

    2015-05-01

    Populations of isogenic embryonic stem cells or clonal bacteria often exhibit extensive phenotypic heterogeneity that arises from intrinsic stochastic dynamics of cells. The phenotypic state of a cell can be transmitted epigenetically in cell division, leading to correlations in the states of cells related by descent. The extent of these correlations is determined by the rates of transitions between the phenotypic states. Therefore, a snapshot of the phenotypes of a collection of cells with known genealogical structure contains information on phenotypic dynamics. Here, we use a model of phenotypic dynamics on a genealogical tree to define an inference method that allows extraction of an approximate probabilistic description of the dynamics from observed phenotype correlations as a function of the degree of kinship. The approach is tested and validated on the example of Pyoverdine dynamics in Pseudomonas aeruginosa colonies. Interestingly, we find that correlations among pairs and triples of distant relatives have a simple but nontrivial structure indicating that observed phenotypic dynamics on the genealogical tree is approximately conformal--a symmetry characteristic of critical behavior in physical systems. The proposed inference method is sufficiently general to be applied in any system where lineage information is available. PMID:25902540

  13. Statistical learning and selective inference.

    PubMed

    Taylor, Jonathan; Tibshirani, Robert J

    2015-06-23

    We describe the problem of "selective inference." This addresses the following challenge: Having mined a set of data to find potential associations, how do we properly assess the strength of these associations? The fact that we have "cherry-picked"--searched for the strongest associations--means that we must set a higher bar for declaring significant the associations that we see. This challenge becomes more important in the era of big data and complex statistical modeling. The cherry tree (dataset) can be very large and the tools for cherry picking (statistical learning methods) are now very sophisticated. We describe some recent new developments in selective inference and illustrate their use in forward stepwise regression, the lasso, and principal components analysis. PMID:26100887

  14. Network Plasticity as Bayesian Inference

    PubMed Central

    Legenstein, Robert; Maass, Wolfgang

    2015-01-01

    General results from statistical learning theory suggest to understand not only brain computations, but also brain plasticity as probabilistic inference. But a model for that has been missing. We propose that inherently stochastic features of synaptic plasticity and spine motility enable cortical networks of neurons to carry out probabilistic inference by sampling from a posterior distribution of network configurations. This model provides a viable alternative to existing models that propose convergence of parameters to maximum likelihood values. It explains how priors on weight distributions and connection probabilities can be merged optimally with learned experience, how cortical networks can generalize learned information so well to novel experiences, and how they can compensate continuously for unforeseen disturbances of the network. The resulting new theory of network plasticity explains from a functional perspective a number of experimental data on stochastic aspects of synaptic plasticity that previously appeared to be quite puzzling. PMID:26545099

  15. Statistical learning and selective inference

    PubMed Central

    Taylor, Jonathan; Tibshirani, Robert J.

    2015-01-01

    We describe the problem of “selective inference.” This addresses the following challenge: Having mined a set of data to find potential associations, how do we properly assess the strength of these associations? The fact that we have “cherry-picked”—searched for the strongest associations—means that we must set a higher bar for declaring significant the associations that we see. This challenge becomes more important in the era of big data and complex statistical modeling. The cherry tree (dataset) can be very large and the tools for cherry picking (statistical learning methods) are now very sophisticated. We describe some recent new developments in selective inference and illustrate their use in forward stepwise regression, the lasso, and principal components analysis. PMID:26100887

  16. Bayesian Inference for Radio Observations

    E-print Network

    Lochner, Michelle; Zwart, Jonathan T L; Smirnov, Oleg; Bassett, Bruce A; Oozeer, Nadeem; Kunz, Martin

    2015-01-01

    (Abridged) New telescopes like the Square Kilometre Array (SKA) will push into a new sensitivity regime and expose systematics, such as direction-dependent effects, that could previously be ignored. Current methods for handling such systematics rely on alternating best estimates of instrumental calibration and models of the underlying sky, which can lead to inaccurate uncertainty estimates and biased results because such methods ignore any correlations between parameters. These deconvolution algorithms produce a single image that is assumed to be a true representation of the sky, when in fact it is just one realisation of an infinite ensemble of images compatible with the noise in the data. In contrast, here we report a Bayesian formalism that simultaneously infers both systematics and science. Our technique, Bayesian Inference for Radio Observations (BIRO), determines all parameters directly from the raw data, bypassing image-making entirely, by sampling from the joint posterior probability distribution. Thi...

  17. Quantum inference on Bayesian networks

    NASA Astrophysics Data System (ADS)

    Low, Guang Hao; Yoder, Theodore J.; Chuang, Isaac L.

    2014-06-01

    Performing exact inference on Bayesian networks is known to be #P-hard. Typically approximate inference techniques are used instead to sample from the distribution on query variables given the values e of evidence variables. Classically, a single unbiased sample is obtained from a Bayesian network on n variables with at most m parents per node in time O (nmP(e)-1), depending critically on P (e), the probability that the evidence might occur in the first place. By implementing a quantum version of rejection sampling, we obtain a square-root speedup, taking O (n2mP(e)-1/2) time per sample. We exploit the Bayesian network's graph structure to efficiently construct a quantum state, a q-sample, representing the intended classical distribution, and also to efficiently apply amplitude amplification, the source of our speedup. Thus, our speedup is notable as it is unrelativized—we count primitive operations and require no blackbox oracle queries.

  18. Network Plasticity as Bayesian Inference.

    PubMed

    Kappel, David; Habenschuss, Stefan; Legenstein, Robert; Maass, Wolfgang

    2015-11-01

    General results from statistical learning theory suggest to understand not only brain computations, but also brain plasticity as probabilistic inference. But a model for that has been missing. We propose that inherently stochastic features of synaptic plasticity and spine motility enable cortical networks of neurons to carry out probabilistic inference by sampling from a posterior distribution of network configurations. This model provides a viable alternative to existing models that propose convergence of parameters to maximum likelihood values. It explains how priors on weight distributions and connection probabilities can be merged optimally with learned experience, how cortical networks can generalize learned information so well to novel experiences, and how they can compensate continuously for unforeseen disturbances of the network. The resulting new theory of network plasticity explains from a functional perspective a number of experimental data on stochastic aspects of synaptic plasticity that previously appeared to be quite puzzling. PMID:26545099

  19. Inferences on mating and sexual systems of two Pacific Cinetorhynchus shrimps (Decapoda, Rhynchocinetidae) based on sexual dimorphism in body size and cheliped weaponry

    PubMed Central

    Bauer, Raymond T.; Okuno, Junji; Thiel, Martin

    2014-01-01

    Abstract Sexual dimorphism in body size and weaponry was examined in two Cinetorhynchus shrimp species in order to formulate hypotheses on their sexual and mating systems. Collections of Cinetorhynchus sp. A and Cinetorhynchus sp. B were made in March, 2011 on Coconut Island, Hawaii, by hand dipnetting and minnow traps in coral rubble bottom in shallow water. Although there is overlap in male and female size, some males are much larger than females. The major (pereopod 1) chelipeds of males are significantly larger and longer than those of females. In these two Cinetorhynchus species, males and females have third maxillipeds of similar relative size, i.e., those of males are not hypertrophied and probably not used as spear-like weapons as in some other rhynchocinetid (Rhynchocinetes) species. Major chelae of males vary with size, changing from typical female-like chelae tipped with black corneous stout setae to subchelate or prehensile appendages in larger males. Puncture wounds or regenerating major chelipeds were observed in 26.1 % of males examined (N = 38 including both species). We interpret this evidence on sexual dimorphism as an indication of a temporary male mate guarding or “neighborhoods of dominance” mating system, in which larger dominant robustus males defend females and have greater mating success than smaller males. Fecundity of females increased with female size, as in most caridean species (500–800 in Cinetorhynchus sp. A; 300–3800 in Cinetorhynchus sp. B). Based on the sample examined, we conclude that these two species have a gonochoric sexual system (separate sexes) like most but not all other rhynchocinetid species in which the sexual system has been investigated. PMID:25561837

  20. Inferences on mating and sexual systems of two Pacific Cinetorhynchus shrimps (Decapoda, Rhynchocinetidae) based on sexual dimorphism in body size and cheliped weaponry.

    PubMed

    Bauer, Raymond T; Okuno, Junji; Thiel, Martin

    2014-01-01

    Sexual dimorphism in body size and weaponry was examined in two Cinetorhynchus shrimp species in order to formulate hypotheses on their sexual and mating systems. Collections of Cinetorhynchus sp. A and Cinetorhynchus sp. B were made in March, 2011 on Coconut Island, Hawaii, by hand dipnetting and minnow traps in coral rubble bottom in shallow water. Although there is overlap in male and female size, some males are much larger than females. The major (pereopod 1) chelipeds of males are significantly larger and longer than those of females. In these two Cinetorhynchus species, males and females have third maxillipeds of similar relative size, i.e., those of males are not hypertrophied and probably not used as spear-like weapons as in some other rhynchocinetid (Rhynchocinetes) species. Major chelae of males vary with size, changing from typical female-like chelae tipped with black corneous stout setae to subchelate or prehensile appendages in larger males. Puncture wounds or regenerating major chelipeds were observed in 26.1 % of males examined (N = 38 including both species). We interpret this evidence on sexual dimorphism as an indication of a temporary male mate guarding or "neighborhoods of dominance" mating system, in which larger dominant robustus males defend females and have greater mating success than smaller males. Fecundity of females increased with female size, as in most caridean species (500-800 in Cinetorhynchus sp. A; 300-3800 in Cinetorhynchus sp. B). Based on the sample examined, we conclude that these two species have a gonochoric sexual system (separate sexes) like most but not all other rhynchocinetid species in which the sexual system has been investigated. PMID:25561837

  1. Temporal evolution of a hydrothermal system in Kusatsu-Shirane Volcano, Japan, inferred from the complex frequencies of long-period events

    USGS Publications Warehouse

    Kumagai, H.; Chouet, B.A.; Nakano, M.

    2002-01-01

    We present a detailed description of temporal variations in the complex frequencies of long-period (LP) events observed at Kusatsu-Shirane Volcano. Using the Sompi method, we analyze 35 LP events that occurred during the period from August 1992 through January 1993. The observed temporal variations in the complex frequencies can be divided into three periods. During the first period the dominant frequency rapidly decreases from 5 to 1 Hz, and Q of the dominant spectral peak remains roughly constant with an average value near 100. During the second period the dominant frequency gradually increases up to 3 Hz, and Q gradually decreases from 160 to 30. During the third period the dominant frequency increases more rapidly from 3 to 5 Hz, and Q shows an abrupt increase at the beginning of this period and then remains roughly constant with an average value near 100. Such temporal variations can be consistently explained by the dynamic response of a hydrothermal crack to a magmatic heat pulse. During the first period, crack growth occurs in response to the overall pressure increase in the hydrothermal system caused by the heat pulse. Once crack formation is complete, heat gradually changes the fluid in the crack from a wet misty gas to a dry gas during the second period. As heating of the hydrothermal system gradually subsides, the overall pressure in this system starts to decrease, causing the collapse of the crack during the third period.

  2. Inferring Land Surface Model Parameters for the Assimilation of Satellite-Based L-Band Brightness Temperature Observations into a Soil Moisture Analysis System

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf H.; De Lannoy, Gabrielle J. M.

    2012-01-01

    The Soil Moisture and Ocean Salinity (SMOS) satellite mission provides global measurements of L-band brightness temperatures at horizontal and vertical polarization and a variety of incidence angles that are sensitive to moisture and temperature conditions in the top few centimeters of the soil. These L-band observations can therefore be assimilated into a land surface model to obtain surface and root zone soil moisture estimates. As part of the observation operator, such an assimilation system requires a radiative transfer model (RTM) that converts geophysical fields (including soil moisture and soil temperature) into modeled L-band brightness temperatures. At the global scale, the RTM parameters and the climatological soil moisture conditions are still poorly known. Using look-up tables from the literature to estimate the RTM parameters usually results in modeled L-band brightness temperatures that are strongly biased against the SMOS observations, with biases varying regionally and seasonally. Such biases must be addressed within the land data assimilation system. In this presentation, the estimation of the RTM parameters is discussed for the NASA GEOS-5 land data assimilation system, which is based on the ensemble Kalman filter (EnKF) and the Catchment land surface model. In the GEOS-5 land data assimilation system, soil moisture and brightness temperature biases are addressed in three stages. First, the global soil properties and soil hydraulic parameters that are used in the Catchment model were revised to minimize the bias in the modeled soil moisture, as verified against available in situ soil moisture measurements. Second, key parameters of the "tau-omega" RTM were calibrated prior to data assimilation using an objective function that minimizes the climatological differences between the modeled L-band brightness temperatures and the corresponding SMOS observations. Calibrated parameters include soil roughness parameters, vegetation structure parameters, and the single scattering albedo. After this climatological calibration, the modeling system can provide L-band brightness temperatures with a global mean absolute bias of less than 10K against SMOS observations, across multiple incidence angles and for horizontal and vertical polarization. Third, seasonal and regional variations in the residual biases are addressed by estimating the vegetation optical depth through state augmentation during the assimilation of the L-band brightness temperatures. This strategy, tested here with SMOS data, is part of the baseline approach for the Level 4 Surface and Root Zone Soil Moisture data product from the planned Soil Moisture Active Passive (SMAP) satellite mission.

  3. An Introduction to Causal Inference*

    PubMed Central

    Pearl, Judea

    2010-01-01

    This paper summarizes recent advances in causal inference and underscores the paradigmatic shifts that must be undertaken in moving from traditional statistical analysis to causal analysis of multivariate data. Special emphasis is placed on the assumptions that underlie all causal inferences, the languages used in formulating those assumptions, the conditional nature of all causal and counterfactual claims, and the methods that have been developed for the assessment of such claims. These advances are illustrated using a general theory of causation based on the Structural Causal Model (SCM) described in Pearl (2000a), which subsumes and unifies other approaches to causation, and provides a coherent mathematical foundation for the analysis of causes and counterfactuals. In particular, the paper surveys the development of mathematical tools for inferring (from a combination of data and assumptions) answers to three types of causal queries: those about (1) the effects of potential interventions, (2) probabilities of counterfactuals, and (3) direct and indirect effects (also known as "mediation"). Finally, the paper defines the formal and conceptual relationships between the structural and potential-outcome frameworks and presents tools for a symbiotic analysis that uses the strong features of both. The tools are demonstrated in the analyses of mediation, causes of effects, and probabilities of causation. PMID:20305706

  4. Transient processes in Stromboli's shallow basaltic system inferred from dolerite and magmatic breccia blocks erupted during the 5 April 2003 paroxysm

    NASA Astrophysics Data System (ADS)

    Renzulli, Alberto; Del Moro, Stefano; Menna, Michele; Landi, Patrizia; Piermattei, Marco

    2009-09-01

    We describe the mineralogy, geochemistry, and mesomicrostructure of fresh subvolcanic blocks erupted during the 5 April 2003 paroxysm of Stromboli (Aeolian Islands, Italy). These blocks represent ˜50 vol.% of the total erupted ejecta and consist of fine- to medium-grained basaltic lithotypes ranging from relatively homogeneous dolerites to strongly or poorly welded magmatic breccias. The breccia components are represented by angular fragments of dolerites entrapped in a matrix of vesiculated (lava-like to scoriae) crystal-rich (CR) basalt. All of the studied blocks are cognates with the CR basalt of the normal Strombolian activity or lavas and they are often coated by a few-centimeter thick layer of crystal-poor (CP) basaltic pumice erupted during the paroxysm. We suggest that they result from the rapid increase of pressure and related subvolcanic rock failure that occurred shortly before the 5 April 2003 explosion, when the uppermost portion of the edifice inflated and suffered brecciation as the result of the sudden rise of the gas-rich CP basalt that triggered the eruption. Dolerites and magmatic matrix of the breccias show major and trace element compositions that match those of the CR basalts erupted during normal Strombolian activity and effusive events at Stromboli volcano. Dolerites consist of (a) phenocrysts normally found in the CR basalts and (b) late-stage magmatic minerals such as sanidine, An60-28 plagioclase, Fe-Mn-rich olivines (Fo68-48), phlogopite, apatite, and opaque mineral pairs (magnetite and ilmenite), most of which are never found both in lava flows and scoriae erupted during the persistent explosive activity that characterizes typical Strombolian behavior. Subvolcanic crystallization of the Stromboli CR magma, leading to slowly cooled equivalents of basalts, could result from transient drainage of the magma from the summit craters to lower levels. Fingering and engulfing of the material that collapsed from the summit crater floor into the shallow basaltic system during the late evening of 28 December 2002 coupled with the short break in the summit persistent explosions between December 2002 and March 2003 permitted the CR magma pockets to solidify as dolerites, which were confined to the uppermost portion of the system and thus not involved in the ongoing flank effusive activity. Crystal size distribution of the basaltic blocks and crystallization of the finer-grained (<0.1 mm) mafic minerals of the dolerites over a time interval of ˜100 days closely agrees with the above interpretation. Vesicle filling (miarolitic cavities) locally found in some dolerites, with minerals deposited as vapor-phase crystallization is a result of continuous gas percolation through the rocks of the uppermost portion of the volcanic system. Poorly welded magmatic breccias formed during syn-eruptive processes of 5 April 2003, when the paroxysm strongly shattered the shallow subvolcanic system and many dolerite fragments were entrapped in the CR magma. In contrast, the high degree of welding between the dolerite clasts and the CR basaltic matrix in the strongly welded magmatic breccias provides a snapshot of subvolcanic intrusions of the CR basalt into the dolerite when, after a 2-month break in activity, CR magmas started to rise again to the summit craters. Blocks similar to these subvolcanic ejecta of 5 April 2003 were also erupted during previous paroxysms (e.g., 1930) suggesting that changes in the usual Strombolian activity (e.g., short breaks in the persistent mild explosions and/or flank effusive activity) lead to transient crystallization of dolerites in the shallow plumbing system.

  5. Inferences on the hydrothermal system beneath the resurgent dome in Long Valley Caldera, east-central California, USA, from recent pumping tests and geochemical sampling

    USGS Publications Warehouse

    Farrar, C.D.; Sorey, M.L.; Roeloffs, E.; Galloway, D.L.; Howle, J.F.; Jacobson, R.

    2003-01-01

    Quaternary volcanic unrest has provided heat for episodic hydrothermal circulation in the Long Valley caldera, including the present-day hydrothermal system, which has been active over the past 40 kyr. The most recent period of crustal unrest in this region of east-central California began around 1980 and has included periods of intense seismicity and ground deformation. Uplift totaling more than 0.7 m has been centered on the caldera's resurgent dome, and is best modeled by a near-vertical ellipsoidal source centered at depths of 6-7 km. Modeling of both deformation and microgravity data now suggests that (1) there are two inflation sources beneath the caldera, a shallower source 7-10 km beneath the resurgent dome and a deeper source ???15 km beneath the caldera's south moat and (2) the shallower source may contain components of magmatic brine and gas. The Long Valley Exploration Well (LVEW), completed in 1998 on the resurgent dome, penetrates to a depth of 3 km directly above this shallower source, but bottoms in a zone of 100??C fluid with zero vertical thermal gradient. Although these results preclude extrapolations of temperatures at depths below 3 km, other information obtained from flow tests and fluid sampling at this well indicates the presence of magmatic volatiles and fault-related permeability within the metamorphic basement rocks underlying the volcanic fill. In this paper, we present recently acquired data from LVEW and compare them with information from other drill holes and thermal springs in Long Valley to delineate the likely flow paths and fluid system properties under the resurgent dome. Additional information from mineralogical assemblages in core obtained from fracture zones in LVEW documents a previous period of more vigorous and energetic fluid circulation beneath the resurgent dome. Although this system apparently died off as a result of mineral deposition and cooling (and/or deepening) of magmatic heat sources, flow testing and tidal analyses of LVEW water level data show that relatively high permeability and strain sensitivity still exist in the steeply dipping principal fracture zone penetrated at a depth of 2.6 km. The hydraulic properties of this zone would allow a pressure change induced at distances of several kilometers below the well to be observable within a matter of days. This indicates that continuous fluid pressure monitoring in the well could provide direct evidence of future intrusions of magma or high-temperature fluids at depths of 5-7 km. ?? 2003 Elsevier B.V. All rights reserved.

  6. Carbon Monitoring System Flux Estimation and Attribution: Impact of ACOS-GOSAT X(CO2) Sampling on the Inference of Terrestrial Biospheric Sources and Sinks

    NASA Technical Reports Server (NTRS)

    Liu, Junjie; Bowman, Kevin W.; Lee, Memong; Henze, David K.; Bousserez, Nicolas; Brix, Holger; Collatz, G. James; Menemenlis, Dimitris; Ott, Lesley; Pawson, Steven; Jones, Dylan; Nassar, Ray

    2014-01-01

    Using an Observing System Simulation Experiment (OSSE), we investigate the impact of JAXA Greenhouse gases Observing SATellite 'IBUKI' (GOSAT) sampling on the estimation of terrestrial biospheric flux with the NASA Carbon Monitoring System Flux (CMS-Flux) estimation and attribution strategy. The simulated observations in the OSSE use the actual column carbon dioxide (X(CO2)) b2.9 retrieval sensitivity and quality control for the year 2010 processed through the Atmospheric CO2 Observations from Space algorithm. CMS-Flux is a variational inversion system that uses the GEOS-Chem forward and adjoint model forced by a suite of observationally constrained fluxes from ocean, land and anthropogenic models. We investigate the impact of GOSAT sampling on flux estimation in two aspects: 1) random error uncertainty reduction and 2) the global and regional bias in posterior flux resulted from the spatiotemporally biased GOSAT sampling. Based on Monte Carlo calculations, we find that global average flux uncertainty reduction ranges from 25% in September to 60% in July. When aggregated to the 11 land regions designated by the phase 3 of the Atmospheric Tracer Transport Model Intercomparison Project, the annual mean uncertainty reduction ranges from 10% over North American boreal to 38% over South American temperate, which is driven by observational coverage and the magnitude of prior flux uncertainty. The uncertainty reduction over the South American tropical region is 30%, even with sparse observation coverage. We show that this reduction results from the large prior flux uncertainty and the impact of non-local observations. Given the assumed prior error statistics, the degree of freedom for signal is approx.1132 for 1-yr of the 74 055 GOSAT X(CO2) observations, which indicates that GOSAT provides approx.1132 independent pieces of information about surface fluxes. We quantify the impact of GOSAT's spatiotemporally sampling on the posterior flux, and find that a 0.7 gigatons of carbon bias in the global annual posterior flux resulted from the seasonally and diurnally biased sampling when using a diagonal prior flux error covariance.

  7. Enantiomer resolution by pressure increase: inferences from experimental and topological results for the binary enantiomer system (R)- and (S)-mandelic acid.

    PubMed

    Rietveld, Ivo B; Barrio, Maria; Tamarit, Josep-Lluis; Do, Bernard; Céolin, René

    2011-12-15

    In pharmacy, racemic compounds are often problematic, because generally only one of the enantiomers possesses therapeutic activity and it is often difficult to separate them. Even though this problem is likely as old as the pharmaceutical industry, one thermodynamically obvious way of separating racemic crystals has never been studied experimentally, which is by using pressure. Data have been obtained on the equilibria of the (R)- and (S)-mandelic acid system as a function of pressure and temperature. With the use of thermodynamic arguments including the Clapeyron, Schröder, and Prigogine-Defay equations, it has been demonstrated that the conglomerate (crystals of separated enantiomers) becomes more stable than the racemic compound at approximately 0.64 GPa and 460 K. Even though this pressure is still higher than at the bottom of the Mariana Trench, there are no technical obstacles to produce such conditions, making pressure a viable option for separating enantiomers. PMID:22047025

  8. Exploiting Human Resource Requirements to Infer Human Movement Patterns for Use in Modelling Disease Transmission Systems: An Example from Eastern Province, Zambia

    PubMed Central

    Alderton, Simon; Noble, Jason; Schaten, Kathrin; Welburn, Susan C.; Atkinson, Peter M.

    2015-01-01

    In this research, an agent-based model (ABM) was developed to generate human movement routes between homes and water resources in a rural setting, given commonly available geospatial datasets on population distribution, land cover and landscape resources. ABMs are an object-oriented computational approach to modelling a system, focusing on the interactions of autonomous agents, and aiming to assess the impact of these agents and their interactions on the system as a whole. An A* pathfinding algorithm was implemented to produce walking routes, given data on the terrain in the area. A* is an extension of Dijkstra’s algorithm with an enhanced time performance through the use of heuristics. In this example, it was possible to impute daily activity movement patterns to the water resource for all villages in a 75 km long study transect across the Luangwa Valley, Zambia, and the simulated human movements were statistically similar to empirical observations on travel times to the water resource (Chi-squared, 95% confidence interval). This indicates that it is possible to produce realistic data regarding human movements without costly measurement as is commonly achieved, for example, through GPS, or retrospective or real-time diaries. The approach is transferable between different geographical locations, and the product can be useful in providing an insight into human movement patterns, and therefore has use in many human exposure-related applications, specifically epidemiological research in rural areas, where spatial heterogeneity in the disease landscape, and space-time proximity of individuals, can play a crucial role in disease spread. PMID:26421926

  9. Investigating the usefulness of satellite-derived fluorescence data in inferring gross primary productivity within the carbon cycle data assimilation system

    NASA Astrophysics Data System (ADS)

    Koffi, E. N.; Rayner, P. J.; Norton, A. J.; Frankenberg, C.; Scholze, M.

    2015-07-01

    Simulations of carbon fluxes with terrestrial biosphere models still exhibit significant uncertainties, in part due to the uncertainty in model parameter values. With the advent of satellite measurements of solar induced chlorophyll fluorescence (SIF), there exists a novel pathway for constraining simulated carbon fluxes and parameter values. We investigate the utility of SIF in constraining gross primary productivity (GPP). As a first test we assess whether SIF simulations are sensitive to important parameters in a biosphere model. SIF measurements at the wavelength of 755 nm are simulated by the Carbon-Cycle Data Assimilation System (CCDAS) which has been augmented by the fluorescence component of the Soil Canopy Observation, Photochemistry and Energy fluxes (SCOPE) model. Idealized sensitivity tests of the SCOPE model stand-alone indicate strong sensitivity of GPP to the carboxylation capacity (Vcmax) and of SIF to the chlorophyll AB content (Cab) and incoming short wave radiation. Low sensitivity is found for SIF to Vcmax, however the relationship is subtle, with increased sensitivity under high radiation conditions and lower Vcmax ranges. CCDAS simulates well the patterns of satellite-measured SIF suggesting the combined model is capable of ingesting the data. CCDAS supports the idealized sensitivity tests of SCOPE, with SIF exhibiting sensitivity to Cab and incoming radiation, both of which are treated as perfectly known in previous CCDAS versions. These results demonstrate the need for careful consideration of Cab and incoming radiation when interpreting SIF and the limitations of utilizing SIF to constrain Vcmax in the present set-up in the CCDAS system.

  10. VARIABLE AND EXTREME IRRADIATION CONDITIONS IN THE EARLY SOLAR SYSTEM INFERRED FROM THE INITIAL ABUNDANCE OF {sup 10}Be IN ISHEYEVO CAIs

    SciTech Connect

    Gounelle, Matthieu; Chaussidon, Marc; Rollion-Bard, Claire

    2013-02-01

    A search for short-lived {sup 10}Be in 21 calcium-aluminum-rich inclusions (CAIs) from Isheyevo, a rare CB/CH chondrite, showed that only 5 CAIs had {sup 10}B/{sup 11}B ratios higher than chondritic correlating with the elemental ratio {sup 9}Be/{sup 11}B, suggestive of in situ decay of this key short-lived radionuclide. The initial ({sup 10}Be/{sup 9}Be){sub 0} ratios vary between {approx}10{sup -3} and {approx}10{sup -2} for CAI 411. The initial ratio of CAI 411 is one order of magnitude higher than the highest ratio found in CV3 CAIs, suggesting that the more likely origin of CAI 411 {sup 10}Be is early solar system irradiation. The low ({sup 26}Al/{sup 27}Al){sub 0} [{<=} 8.9 Multiplication-Sign 10{sup -7}] with which CAI 411 formed indicates that it was exposed to gradual flares with a proton fluence of a few 10{sup 19} protons cm{sup -2}, during the earliest phases of the solar system, possibly the infrared class 0. The irradiation conditions for other CAIs are less well constrained, with calculated fluences ranging between a few 10{sup 19} and 10{sup 20} protons cm{sup -2}. The variable and extreme value of the initial {sup 10}Be/{sup 9}Be ratios in carbonaceous chondrite CAIs is the reflection of the variable and extreme magnetic activity in young stars observed in the X-ray domain.

  11. Efficient inference for hybrid dynamic Bayesian networks

    NASA Astrophysics Data System (ADS)

    Chang, Kuo Chu; Chen, Hongda

    2005-07-01

    This paper is a revision of a paper presented at the SPIE conference on Signal Processing, Senior Fusion, and Target Recognition XII, Aug. 2004, Orlando, Florida. The paper presented there appears (unrefereed) in SPIE Proceedings Vol. 5429. Bayesian networks for static as well as for dynamic cases have been the subject of a great deal of theoretical analysis and practical inference-algorithm development in the research community of artificial intelligence, machine learning, and pattern recognition. After summarizing the well-known theory of discrete and continuous Bayesian networks, we introduce an efficient reasoning scheme into hybrid Bayesian networks. In addition to illustrating the similarities between the dynamic Bayesian networks and the Kalman filter, we present a computationally efficient approach for the inference problem of hybrid dynamic Bayesian networks (HDBNs). The proposed method is based on the separation of the dynamic and static nodes, and subsequent hypercubic partitions via the decision tree algorithm. Experiments show that with high statistical confidence the novel algorithm used in the HDBN performs favorably in the trade-offs of computational complexity and accuracy performance, compared to other exact and approximate methods for applications with uncertainty in a dynamic system.

  12. Information Theory, Inference and Learning Algorithms

    NASA Astrophysics Data System (ADS)

    Mackay, David J. C.

    2003-10-01

    Information theory and inference, often taught separately, are here united in one entertaining textbook. These topics lie at the heart of many exciting areas of contemporary science and engineering - communication, signal processing, data mining, machine learning, pattern recognition, computational neuroscience, bioinformatics, and cryptography. This textbook introduces theory in tandem with applications. Information theory is taught alongside practical communication systems, such as arithmetic coding for data compression and sparse-graph codes for error-correction. A toolbox of inference techniques, including message-passing algorithms, Monte Carlo methods, and variational approximations, are developed alongside applications of these tools to clustering, convolutional codes, independent component analysis, and neural networks. The final part of the book describes the state of the art in error-correcting codes, including low-density parity-check codes, turbo codes, and digital fountain codes -- the twenty-first century standards for satellite communications, disk drives, and data broadcast. Richly illustrated, filled with worked examples and over 400 exercises, some with detailed solutions, David MacKay's groundbreaking book is ideal for self-learning and for undergraduate or graduate courses. Interludes on crosswords, evolution, and sex provide entertainment along the way. In sum, this is a textbook on information, communication, and coding for a new generation of students, and an unparalleled entry point into these subjects for professionals in areas as diverse as computational biology, financial engineering, and machine learning.

  13. Inference for reaction networks using the linear noise approximation.

    PubMed

    Fearnhead, Paul; Giagos, Vasilieos; Sherlock, Chris

    2014-06-01

    We consider inference for the reaction rates in discretely observed networks such as those found in models for systems biology, population ecology, and epidemics. Most such networks are neither slow enough nor small enough for inference via the true state-dependent Markov jump process to be feasible. Typically, inference is conducted by approximating the dynamics through an ordinary differential equation (ODE) or a stochastic differential equation (SDE). The former ignores the stochasticity in the true model and can lead to inaccurate inferences. The latter is more accurate but is harder to implement as the transition density of the SDE model is generally unknown. The linear noise approximation (LNA) arises from a first-order Taylor expansion of the approximating SDE about a deterministic solution and can be viewed as a compromise between the ODE and SDE models. It is a stochastic model, but discrete time transition probabilities for the LNA are available through the solution of a series of ordinary differential equations. We describe how a restarting LNA can be efficiently used to perform inference for a general class of reaction networks; evaluate the accuracy of such an approach; and show how and when this approach is either statistically or computationally more efficient than ODE or SDE methods. We apply the LNA to analyze Google Flu Trends data from the North and South Islands of New Zealand, and are able to obtain more accurate short-term forecasts of new flu cases than another recently proposed method, although at a greater computational cost. PMID:24467590

  14. Inferring Music Selections for Casual Music Interaction Daniel Boland

    E-print Network

    Murray-Smith, Roderick

    such as Spotify are available but users often just want background music, not a specific song out of millionsInferring Music Selections for Casual Music Interaction Daniel Boland University of Glasgow United music interaction systems developed for casual exploratory search. In casual search scenarios, users

  15. Inferring Geographical Ontologies from Multiple Resources for Geographical Information Retrieval

    E-print Network

    Rosso, Paolo

    ) and the Geographic Names Information System5 (GNIS) are freely available and pro- vide plenty of geographicalInferring Geographical Ontologies from Multiple Resources for Geographical Information Retrieval task. In many cases, explicit geographical information is missing from the documents, for instance

  16. Inferring carbon monoxide pollution changes from space-based observations

    E-print Network

    ) instrument observed CO on Space Shuttle flights in 1984 and 1994. More recently, the MeasurementsInferring carbon monoxide pollution changes from space-based observations Drew T. Shindell NASA Goddard Institute for Space Studies, New York, New York, USA Center for Climate Systems Research, Columbia

  17. Privacy-Preserving Inference of Social Relationships from Location Data

    E-print Network

    Shahabi, Cyrus

    Privacy-Preserving Inference of Social Relationships from Location Data Cyrus Shahabi, Liyue Fan, Luciano Nocera Li Xiong Ming Li Integrated Media Systems Center Department of Math&CS Department, nocera@usc.edu lxiong@mathcs.emory.edu ming.li@usu.edu ABSTRACT Social relationships between people, e

  18. An Approximate Inference Approach to Temporal Optimization in Optimal Control

    E-print Network

    Toussaint, Marc

    An Approximate Inference Approach to Temporal Optimization in Optimal Control Konrad C. Rawlik on iterative local approximations present a practical approach to optimal control in robotic systems. However optimizing the temporal parameters in addition to the control command profiles. The presented approach

  19. Continuous Inference of Psychological Stress from Sensory Measurements

    E-print Network

    Kumar, Santosh

    Sense Wearable Sensor Suite Continuous Stress Inference, Kurt Plarre IPSN 2011 10 Android G1 Cell Phone wearable sensor system · Collect multiple sensor modalities · Provide scientifically valid data 2. Control a new wearable sensor suite Conducted scientific user study with validated stress protocol · 21

  20. Distributed Inference and Query Processing for RFID Tracking and Monitoring

    E-print Network

    Diao, Yanlei

    Distributed Inference and Query Processing for RFID Tracking and Monitoring Zhao Cao, Charles@inf.ed.ac.uk ABSTRACT In this paper, we present the design of a scalable, distributed stream processing system for RFID tracking and monitoring. Since RFID data lacks containment and location information that is key to query

  1. VALIDATION OF TERMINOLOGICAL INFERENCE IN AN INFORMATION EXTRACTION TASK

    E-print Network

    VALIDATION OF TERMINOLOGICAL INFERENCE IN AN INFORMATION EXTRACTION TASK Marc Vilain The MITRE with an inferential approach to information extraction, reporting in particular on the results of an empirical study for tractable terminological knowledge representation, and (2) the Alembic message understanding system

  2. Inferring the magmatic plumbing system and melt evolution from olivine-hosted melt inclusions at Cinder Cone, Lassen Volcanic National Park, California

    NASA Astrophysics Data System (ADS)

    Walowski, K. J.; Wallace, P. J.; Cashman, K. V.; Clynne, M. A.

    2011-12-01

    Monogenetic basaltic cinder cones are the most abundant volcanic landform on Earth. While typically short-lived, cinder cone eruptions often display a range of eruption styles, including Strombolian, violent Strombolian, and even sub-Plinian activity. However, the processes driving explosive cinder cone eruptions remain poorly understood. In this study we investigate the volatile (H2O, CO2), major, and trace element chemistry of olivine-hosted melt inclusions from the tephra of 'Cinder Cone,' Lassen Volcanic NP, to better understand basaltic cinder cone eruptions and their underlying plumbing systems. Erupted in 1666 C.E., Cinder Cone is a young, un-vegetated cinder cone with well-preserved lava flows and tephra deposits. We have divided the tephra sequence, previously described by Heiken (1978) as Units 1, 2 and 3, into nine fall samples (LCC-9 through LCC-1). From these nine, we have obtained data from four tephra samples that span the sequence, one each corresponding with Units 1 and 3, and two from Unit 2. Olivine-hosted melt inclusions from the tephra at Cinder Cone trapped some of the most volatile-rich (1.7-3.4 wt% H2O, 530-1375 ppm CO2) and primitive (8.4-9.7 wt% MgO; olivine hosts Fo88-90) melts yet measured in the Cascade Arc (Ruscitto et al., 2010, EPSL). The melt inclusions, however, do not show evidence of the temporal changes in composition seen in whole rock and bulk tephra data that result from crustal contamination. Nearly all of the analyzed melt inclusions have lower SiO2 (50.4 wt.%) and higher TiO2 contents (0.8-0.95 wt%) than the whole-rock compositions (53-60 wt% and 0.5-0.85 wt.%, respectively). The range in H2O and CO2 concentrations likewise remains remarkably constant throughout the tephra deposit, with only the basal-most unit having a few higher H2O values. The differences between the whole-rock and melt inclusion compositions suggest that olivine crystallized from a primitive parental magma as it was rising to the surface, prior to the crustal contamination experienced by the magma near the surface. Additionally, the contamination must have occurred with little cooling of the magma, because cooling would have caused more olivine to form, with melt inclusions showing the effects of contamination and likely lower pressures. At Cinder Cone, we do not see any evidence for formation of a shallow magma reservoir beneath the volcano later in the eruption, as has been found at Jorullo and Parícutin in Mexico. Further detailed investigation of the Cinder Cone tephra sequence will better constrain our understanding of the underlying plumbing system.

  3. Geometry and kinematic evolution of a long-living foreland structure inferred from field data and cross section balancing, the Sainte-Victoire System, Provence, France

    NASA Astrophysics Data System (ADS)

    Espurt, Nicolas; Hippolyte, Jean-Claude; Saillard, Marianne; Bellier, Olivier

    2012-08-01

    The Sainte-Victoire System (SVS) is a key area to understand how the shortening is accommodated in outer foreland of the Pyrenean-Provence orogen between Late Cretaceous and Eocene. Structural data, growth strata and fault slip analysis, and four balanced cross sections are used to decipher the along-strike geometry, deformational characteristics and kinematics of the SVS. The SVS is divided into two structural domains separated by a regional relay zone: the eastern domain is governed by a N-vergent thin-skinned tectonic style above Triassic series and the western domain, by a mixed S-vergent thick- and thin-skinned tectonic style with tectonic inversion of Late Paleozoic-Triassic half grabens. Growth strata indicate that the eastern SVS grew during Danian as a result of shortening transfer from the southern Arc Basin. In contrast, the western SVS is an independent structure which has recorded the early stage (˜83 Ma) of shortening and focused continuous deformation during ˜40 Myr. The shallow N-S shortening is ˜5 km (˜25%) and ˜8 km (˜34%) in the western and eastern SVS, respectively. At a regional scale, the tectonic inversion of the SVS and the Arc Basin recorded a deep shortening of the order of 15-18 km (˜34%). Although the shortening magnitude of the SVS remains small, other structures similar to the SVS were synchronously active across foreland basin, suggesting a significant amount of cumulated shortening. This outer foreland shortening may account for a non-negligible amount of deformation at the Pyrenean-Provence orogen scale.

  4. Response of a hydrothermal system to magmatic heat inferred from temporal variations in the complex frequencies of long-period events at Kusatsu-Shirane Volcano, Japan

    USGS Publications Warehouse

    Nakano, M.; Kumagai, H.

    2005-01-01

    We investigate temporal variations in the complex frequencies (frequency and quality factor Q) of long-period (LP) events that occurred at Kusatsu-Shirane Volcano, central Japan. We analyze LP waveforms observed at this volcano in the period between 1988 and 1995, which covers a seismically active period between 1989 and 1993. Systematic temporal variations in the complex frequencies are observed in October-November 1989, July-October 1991, and September 1992-January 1993. We use acoustic properties of a crack filled with hydrothermal fluids to interpret the observed temporal variations in the complex frequencies. The temporal variations in October-November 1989 can be divided into two periods, which are explained by a gradual decrease and increase of a gas-volume fraction in a water-steam mixture in a crack, respectively. The temporal variations in July-October 1991 can be also divided into two periods. These variations in the first and second periods are similar to those observed in November 1989 and in September-November 1992, respectively, and are interpreted as drying of a water-steam mixture and misty gas in a crack, respectively. The repeated nature of the temporal variations observed in similar seasons between July and November suggests the existence of seasonality in the occurrence of LP events. This may be caused by a seasonally variable meteoritic water supply to a hydrothermal system, which may have been heated by the flux of volcanic gases from magma beneath this volcano. ?? 2005 Elsevier B.V. All rights reserved.

  5. Bayesian multimodel inference for dose-response studies

    USGS Publications Warehouse

    Link, W.A.; Albers, P.H.

    2007-01-01

    Statistical inference in dose?response studies is model-based: The analyst posits a mathematical model of the relation between exposure and response, estimates parameters of the model, and reports conclusions conditional on the model. Such analyses rarely include any accounting for the uncertainties associated with model selection. The Bayesian inferential system provides a convenient framework for model selection and multimodel inference. In this paper we briefly describe the Bayesian paradigm and Bayesian multimodel inference. We then present a family of models for multinomial dose?response data and apply Bayesian multimodel inferential methods to the analysis of data on the reproductive success of American kestrels (Falco sparveriuss) exposed to various sublethal dietary concentrations of methylmercury.

  6. Inferring genetic values for quantitative traits non-parametrically.

    PubMed

    Gianola, Daniel; de los Campos, Gustavo

    2008-12-01

    Inferences about genetic values and prediction of phenotypes for a quantitative trait in the presence of complex forms of gene action, issues of importance in animal and plant breeding, and in evolutionary quantitative genetics, are discussed. Current methods for dealing with epistatic variability via variance component models are reviewed. Problems posed by cryptic, non-linear, forms of epistasis are identified and discussed. Alternative statistical procedures are suggested. Non-parametric definitions of additive effects (breeding values), with and without employing molecular information, are proposed, and it is shown how these can be inferred using reproducing kernel Hilbert spaces regression. Two stylized examples are presented to demonstrate the methods numerically. The first example falls in the domain of the infinitesimal model of quantitative genetics, with additive and dominance effects inferred both parametrically and non-parametrically. The second example tackles a non-linear genetic system with two loci, and the predictive ability of several models is evaluated. PMID:19123970

  7. Automated weighing by sequential inference in dynamic environments

    E-print Network

    Martin, A D

    2015-01-01

    We demonstrate sequential mass inference of a suspended bag of milk powder from simulated measurements of the vertical force component at the pivot while the bag is being filled. We compare the predictions of various sequential inference methods both with and without a physics model to capture the system dynamics. We find that non-augmented and augmented-state unscented Kalman filters (UKFs) in conjunction with a physics model of a pendulum of varying mass and length provide rapid and accurate predictions of the milk powder mass as a function of time. The UKFs outperform the other method tested - a particle filter. Moreover, inference methods which incorporate a physics model outperform equivalent algorithms which do not.

  8. Master Thesis proposal Inference of T cell gene regulatory networks and

    E-print Network

    Schön, Thomas

    Master Thesis proposal Inference of T cell gene regulatory networks and master regulators from gene expression variations in cancer patients and used these to infer differential activity This proposal is for a Master thesis in the field of Systems Biology. Background and aims: The group of Mika

  9. Diagnosing Client Faults Using SVM-based Intelligent Inference from TCP Packet Traces

    E-print Network

    Sekercioglu, Y. Ahmet

    Diagnosing Client Faults Using SVM-based Intelligent Inference from TCP Packet Traces Chathuranga the Intelligent Automated Client Di- agnostic (IACD) system, which only relies on inference from Transmission Control Protocol (TCP) packet traces for rapid diagnosis of client device problems that cause network per

  10. mConverse: Inferring Conversation Episodes from Respiratory Measurements Collected in the Field

    E-print Network

    Kumar, Santosh

    mConverse: Inferring Conversation Episodes from Respiratory Measurements Collected in the Field Md. In this paper, we present mConverse, a new mobile- based system to infer conversation episodes from respiration measurements collected in the field from an unobtrusively wearable respiratory inductive plethysmograph (RIP

  11. Dead Code Elimination Through Type Inference Ozan Hafizo~gullari Christoph Kreitz

    E-print Network

    Kreitz, Christoph

    Dead Code Elimination Through Type Inference Ozan Hafizo~gullari Christoph Kreitz Department introduce a method to detect and eliminate dead code in typed functional programming languages. Our approach relies on a type system with simple subtypes for specifying dead code and a type inference algorithm

  12. Behavioral Resource-Aware Model Inference Tony Ohmann Michael Herzberg Sebastian Fiss Armand Halbert

    E-print Network

    Brun, Yuriy

    and comprehension efforts. We describe Perfume, an automated approach for inferring behav- ioral, resource understanding of system behavior and resource use. Perfume improves on the state of the art in model inference by differentiating behaviorally similar executions that differ in resource consumption. For example, Perfume

  13. Bayesian inference and "truth": a comment on Hoffman, Singh, and Prakash.

    PubMed

    Feldman, Jacob

    2015-12-01

    Hoffman, Singh, and Prakash (in press) argue that veridicality is neither required nor achieved by the visual system, and propose a new framework in which the literal truth of perceptual inferences plays no role. In this brief comment, I concur with and advocate their basic position, though I go on to argue that Bayesian inference already embodies a similar epistemological stance. PMID:26384987

  14. Bayesian inference via rejection filtering

    E-print Network

    Nathan Wiebe; Christopher Granade; Ashish Kapoor; Krysta M Svore

    2015-12-03

    We provide a method for approximating Bayesian inference using rejection sampling. We not only make the process efficient, but also dramatically reduce the memory required relative to conventional methods by combining rejection sampling with particle filtering. We also provide an approximate form of rejection sampling that makes rejection filtering tractable in cases where exact rejection sampling is not efficient. Finally, we present several numerical examples of rejection filtering that show its ability to track time dependent parameters in online settings and also benchmark its performance on MNIST classification problems.

  15. Force control of a tri-layer conducting polymer actuator using optimized fuzzy logic control

    NASA Astrophysics Data System (ADS)

    Itik, Mehmet; Sabetghadam, Mohammadreza; Alici, Gursel

    2014-12-01

    Conducting polymers actuators (CPAs) are potential candidates for replacing conventional actuators in various fields, such as robotics and biomedical engineering, due to their advantageous properties, which includes their low cost, light weight, low actuation voltage and biocompatibility. As these actuators are very suitable for use in micro-nano manipulation and in injection devices in which the magnitude of the force applied to the target is of crucial importance, the force generated by CPAs needs to be accurately controlled. In this paper, a fuzzy logic (FL) controller with a Mamdani inference system is designed to control the blocking force of a trilayer CPA with polypyrrole electrodes, which operates in air. The particle swarm optimization (PSO) method is employed to optimize the controller’s membership function parameters and therefore enhance the performance of the FL controller. An adaptive neuro-fuzzy inference system model, which can capture the nonlinear dynamics of the actuator, is utilized in the optimization process. The optimized Mamdani FL controller is then implemented on the CPA experimentally, and its performance is compared with a non-optimized fuzzy controller as well as with those obtained from a conventional PID controller. The results presented indicate that the blocking force at the tip of the CPA can be effectively controlled by the optimized FL controller, which shows excellent transient and steady state characteristics but increases the control voltage compared to the non-optimized fuzzy controllers.

  16. Dopamine, Affordance and Active Inference

    PubMed Central

    Friston, Karl J.; Shiner, Tamara; FitzGerald, Thomas; Galea, Joseph M.; Adams, Rick; Brown, Harriet; Dolan, Raymond J.; Moran, Rosalyn; Stephan, Klaas Enno; Bestmann, Sven

    2012-01-01

    The role of dopamine in behaviour and decision-making is often cast in terms of reinforcement learning and optimal decision theory. Here, we present an alternative view that frames the physiology of dopamine in terms of Bayes-optimal behaviour. In this account, dopamine controls the precision or salience of (external or internal) cues that engender action. In other words, dopamine balances bottom-up sensory information and top-down prior beliefs when making hierarchical inferences (predictions) about cues that have affordance. In this paper, we focus on the consequences of changing tonic levels of dopamine firing using simulations of cued sequential movements. Crucially, the predictions driving movements are based upon a hierarchical generative model that infers the context in which movements are made. This means that we can confuse agents by changing the context (order) in which cues are presented. These simulations provide a (Bayes-optimal) model of contextual uncertainty and set switching that can be quantified in terms of behavioural and electrophysiological responses. Furthermore, one can simulate dopaminergic lesions (by changing the precision of prediction errors) to produce pathological behaviours that are reminiscent of those seen in neurological disorders such as Parkinson's disease. We use these simulations to demonstrate how a single functional role for dopamine at the synaptic level can manifest in different ways at the behavioural level. PMID:22241972

  17. Quantum Inference on Bayesian Networks

    E-print Network

    Guang Hao Low; Theodore J. Yoder; Isaac L. Chuang

    2014-02-28

    Performing exact inference on Bayesian networks is known to be #P-hard. Typically approximate inference techniques are used instead to sample from the distribution on query variables given the values $e$ of evidence variables. Classically, a single unbiased sample is obtained from a Bayesian network on $n$ variables with at most $m$ parents per node in time $\\mathcal{O}(nmP(e)^{-1})$, depending critically on $P(e)$, the probability the evidence might occur in the first place. By implementing a quantum version of rejection sampling, we obtain a square-root speedup, taking $\\mathcal{O}(n2^mP(e)^{-\\frac12})$ time per sample. We exploit the Bayesian network's graph structure to efficiently construct a quantum state, a q-sample, representing the intended classical distribution, and also to efficiently apply amplitude amplification, the source of our speedup. Thus, our speedup is notable as it is unrelativized -- we count primitive operations and require no blackbox oracle queries.

  18. SERIES - Satellite Emission Range Inferred Earth Surveying

    NASA Technical Reports Server (NTRS)

    Macdoran, P. F.; Spitzmesser, D. J.; Buennagel, L. A.

    1983-01-01

    The Satellite Emission Range Inferred Earth Surveying (SERIES) concept is based on the utilization of NAVSTAR Global Positioning System (GPS) radio transmissions without any satellite modifications and in a totally passive mode. The SERIES stations are equipped with lightweight 1.5 m diameter dish antennas mounted on trailers. A series baseline measurement accuracy demonstration is considered, taking into account a 100 meter baseline estimation from approximately one hour of differential Doppler data. It is planned to conduct the next phase of experiments on a 150 m baseline. Attention is given to details regarding future baseline measurement accuracy demonstrations, aspects of ionospheric calibration in connection with subdecimeter baseline accuracy requirements of geodesy, and advantages related to the use of the differential Doppler or pseudoranging mode.

  19. cosmoabc: Likelihood-free inference for cosmology

    NASA Astrophysics Data System (ADS)

    Ishida, Emille E. O.; Vitenti, Sandro D. P.; Penna-Lima, Mariana; Trindade, Arlindo M.; Cisewski, Jessi; M.; de Souza, Rafael; Cameron, Ewan; Busti, Vinicius C.

    2015-05-01

    Approximate Bayesian Computation (ABC) enables parameter inference for complex physical systems in cases where the true likelihood function is unknown, unavailable, or computationally too expensive. It relies on the forward simulation of mock data and comparison between observed and synthetic catalogs. cosmoabc is a Python Approximate Bayesian Computation (ABC) sampler featuring a Population Monte Carlo variation of the original ABC algorithm, which uses an adaptive importance sampling scheme. The code can be coupled to an external simulator to allow incorporation of arbitrary distance and prior functions. When coupled with the numcosmo library, it has been used to estimate posterior probability distributions over cosmological parameters based on measurements of galaxy clusters number counts without computing the likelihood function.

  20. Bayesian Nonparametric Inference - Why and How.

    PubMed

    Müller, Peter; Mitra, Riten

    2013-01-01

    We review inference under models with nonparametric Bayesian (BNP) priors. The discussion follows a set of examples for some common inference problems. The examples are chosen to highlight problems that are challenging for standard parametric inference. We discuss inference for density estimation, clustering, regression and for mixed effects models with random effects distributions. While we focus on arguing for the need for the flexibility of BNP models, we also review some of the more commonly used BNP models, thus hopefully answering a bit of both questions, why and how to use BNP. PMID:24368932

  1. 18.441 Statistical Inference, Spring 2002

    E-print Network

    Hardy, Michael

    Reviews probability and introduces statistical inference. Point and interval estimation. The maximum likelihood method. Hypothesis testing. Likelihood-ratio tests and Bayesian methods. Nonparametric methods. Analysis of ...

  2. Bayesian Inference of Tumor Hypoxia

    NASA Astrophysics Data System (ADS)

    Gunawan, R.; Tenti, G.; Sivaloganathan, S.

    2009-12-01

    Tumor hypoxia is a state of oxygen deprivation in tumors. It has been associated with aggressive tumor phenotypes and with increased resistance to conventional cancer therapies. In this study, we report on the application of Bayesian sequential analysis in estimating the most probable value of tumor hypoxia quantification based on immunohistochemical assays of a biomarker. The `gold standard' of tumor hypoxia assessment is a direct measurement of pO2 in vivo by the Eppendorf polarographic electrode, which is an invasive technique restricted to accessible sites and living tissues. An attractive alternative is immunohistochemical staining to detect proteins expressed by cells during hypoxia. Carbonic anhydrase IX (CAIX) is an enzyme expressed on the cell membrane during hypoxia to balance the immediate extracellular microenvironment. CAIX is widely regarded as a surrogate marker of chronic hypoxia in various cancers. The study was conducted with two different experimental procedures. The first data set was a group of three patients with invasive cervical carcinomas, from which five biopsies were obtained. Each of the biopsies was fully sectioned and from each section, the proportion of CAIX-positive cells was estimated. Measurements were made by image analysis of multiple deep sections cut through these biopsies, labeled for CAIX using both immunofluorescence and immunohistochemical techniques [1]. The second data set was a group of 24 patients, also with invasive cervical carcinomas, from which two biopsies were obtained. Bayesian parameter estimation was applied to obtain a reliable inference about the proportion of CAIX-positive cells within the carcinomas, based on the available biopsies. From the first data set, two to three biopsies were found to be sufficient to infer the overall CAIX percentage in the simple form: best estimate±uncertainty. The second data-set led to a similar result in 70% of the cases. In the remaining cases Bayes' theorem warned us automatically that the inference from the data could not be summarized by just two numbers, but the full posterior probability density function (pdf) had to be used.

  3. 210 ROBERT C. STALNAKER Reasonable inference. The inference from a sequence of sentences of L,

    E-print Network

    Fitelson, Branden

    210 ROBERT C. STALNAKER Reasonable inference. The inference from a sequence of sentences of L, IJ conditions for assertion types will be finer than those for propositions. The reason for this is that diffe

  4. Logic Machine Architecture: inference mechanisms

    SciTech Connect

    Lusk, E.L.; McCune, W.W.; Overbeek, R.A.

    1982-01-01

    Logic Machine Architecture (LMA) is a layered implementation of theorem-proving tools. The kernel of formula storage, retrieval, and manipulation primitives (layers 0 and 1) is described elsewhere. The layer described here (layer 2) contains resolution- and equality-based inference rules, subsumption, and demodulation. It is designed to provide all of the tools required to create a theorem-prover with minimal effort. Although LMA is currently implemented in Pascal, an interface to LISP will be included in the original release. This paper includes the design principles and techniques used in layer 2, as well as two simple theorem provers which illustrate the services of layer 2 - one written in LISP and the other in Pascal.

  5. Mod/Resc Parsimony Inference

    NASA Astrophysics Data System (ADS)

    Nor, Igor; Hermelin, Danny; Charlat, Sylvain; Engelstadter, Jan; Reuter, Max; Duron, Olivier; Sagot, Marie-France

    We address in this paper a new computational biology problem that aims at understanding a mechanism that could potentially be used to genetically manipulate natural insect populations infected by inherited, intra-cellular parasitic bacteria. In this problem, that we denote by Mod/Resc Parsimony Inference, we are given a boolean matrix and the goal is to find two other boolean matrices with a minimum number of columns such that an appropriately defined operation on these matrices gives back the input. We show that this is formally equivalent to the Bipartite Biclique Edge Cover problem and derive some complexity results for our problem using this equivalence. We provide a new, fixed-parameter tractability approach for solving both that slightly improves upon a previously published algorithm for the Bipartite Biclique Edge Cover. Finally, we present experimental results where we applied some of our techniques to a real-life data set.

  6. Population heterogeneity and causal inference

    PubMed Central

    Xie, Yu

    2013-01-01

    Population heterogeneity is ubiquitous in social science. The very objective of social science research is not to discover abstract and universal laws but to understand population heterogeneity. Due to population heterogeneity, causal inference with observational data in social science is impossible without strong assumptions. Researchers have long been concerned with two potential sources of bias. The first is bias in unobserved pretreatment factors affecting the outcome even in the absence of treatment. The second is bias due to heterogeneity in treatment effects. In this article, I show how “composition bias” due to population heterogeneity evolves over time when treatment propensity is systematically associated with heterogeneous treatment effects. A form of selection bias, composition bias, arises dynamically at the aggregate level even when the classic assumption of ignorability holds true at the microlevel. PMID:23530202

  7. Transdimensional inference in the geosciences.

    PubMed

    Sambridge, M; Bodin, T; Gallagher, K; Tkalcic, H

    2013-02-13

    Seismologists construct images of the Earth's interior structure using observations, derived from seismograms, collected at the surface. A common approach to such inverse problems is to build a single 'best' Earth model, in some sense. This is despite the fact that the observations by themselves often do not require, or even allow, a single best-fit Earth model to exist. Interpretation of optimal models can be fraught with difficulties, particularly when formal uncertainty estimates become heavily dependent on the regularization imposed. Similar issues occur across the physical sciences with model construction in ill-posed problems. An alternative approach is to embrace the non-uniqueness directly and employ an inference process based on parameter space sampling. Instead of seeking a best model within an optimization framework, one seeks an ensemble of solutions and derives properties of that ensemble for inspection. While this idea has itself been employed for more than 30 years, it is now receiving increasing attention in the geosciences. Recently, it has been shown that transdimensional and hierarchical sampling methods have some considerable benefits for problems involving multiple parameter types, uncertain data errors and/or uncertain model parametrizations, as are common in seismology. Rather than being forced to make decisions on parametrization, the level of data noise and the weights between data types in advance, as is often the case in an optimization framework, the choice can be informed by the data themselves. Despite the relatively high computational burden involved, the number of areas where sampling methods are now feasible is growing rapidly. The intention of this article is to introduce concepts of transdimensional inference to a general readership and illustrate with particular seismological examples. A growing body of references provide necessary detail. PMID:23277604

  8. Jordan and Weiss: Graphical Models: Probabilistic inference 1 Graphical models: Probabilistic inference

    E-print Network

    Jordan, Michael I.

    inference Michael I. Jordan jordan@cs.berkeley.edu Division of Computer Science and Department of StatisticsJordan and Weiss: Graphical Models: Probabilistic inference 1 Graphical models: Probabilistic Hebrew University RUNNING HEAD: Probabilistic inference in graphical models Correspondence: Michael I

  9. Network geometry inference using common neighbors.

    PubMed

    Papadopoulos, Fragkiskos; Aldecoa, Rodrigo; Krioukov, Dmitri

    2015-08-01

    We introduce and explore a method for inferring hidden geometric coordinates of nodes in complex networks based on the number of common neighbors between the nodes. We compare this approach to the HyperMap method, which is based only on the connections (and disconnections) between the nodes, i.e., on the links that the nodes have (or do not have). We find that for high degree nodes, the common-neighbors approach yields a more accurate inference than the link-based method, unless heuristic periodic adjustments (or "correction steps") are used in the latter. The common-neighbors approach is computationally intensive, requiring O(t4) running time to map a network of t nodes, versus O(t3) in the link-based method. But we also develop a hybrid method with O(t3) running time, which combines the common-neighbors and link-based approaches, and we explore a heuristic that reduces its running time further to O(t2), without significant reduction in the mapping accuracy. We apply this method to the autonomous systems (ASs) Internet, and we reveal how soft communities of ASs evolve over time in the similarity space. We further demonstrate the method's predictive power by forecasting future links between ASs. Taken altogether, our results advance our understanding of how to efficiently and accurately map real networks to their latent geometric spaces, which is an important necessary step toward understanding the laws that govern the dynamics of nodes in these spaces, and the fine-grained dynamics of network connections. PMID:26382454

  10. Network geometry inference using common neighbors

    NASA Astrophysics Data System (ADS)

    Papadopoulos, Fragkiskos; Aldecoa, Rodrigo; Krioukov, Dmitri

    2015-08-01

    We introduce and explore a method for inferring hidden geometric coordinates of nodes in complex networks based on the number of common neighbors between the nodes. We compare this approach to the HyperMap method, which is based only on the connections (and disconnections) between the nodes, i.e., on the links that the nodes have (or do not have). We find that for high degree nodes, the common-neighbors approach yields a more accurate inference than the link-based method, unless heuristic periodic adjustments (or "correction steps") are used in the latter. The common-neighbors approach is computationally intensive, requiring O (t4) running time to map a network of t nodes, versus O (t3) in the link-based method. But we also develop a hybrid method with O (t3) running time, which combines the common-neighbors and link-based approaches, and we explore a heuristic that reduces its running time further to O (t2) , without significant reduction in the mapping accuracy. We apply this method to the autonomous systems (ASs) Internet, and we reveal how soft communities of ASs evolve over time in the similarity space. We further demonstrate the method's predictive power by forecasting future links between ASs. Taken altogether, our results advance our understanding of how to efficiently and accurately map real networks to their latent geometric spaces, which is an important necessary step toward understanding the laws that govern the dynamics of nodes in these spaces, and the fine-grained dynamics of network connections.

  11. Synaptic and nonsynaptic plasticity approximating probabilistic inference.

    PubMed

    Tully, Philip J; Hennig, Matthias H; Lansner, Anders

    2014-01-01

    Learning and memory operations in neural circuits are believed to involve molecular cascades of synaptic and nonsynaptic changes that lead to a diverse repertoire of dynamical phenomena at higher levels of processing. Hebbian and homeostatic plasticity, neuromodulation, and intrinsic excitability all conspire to form and maintain memories. But it is still unclear how these seemingly redundant mechanisms could jointly orchestrate learning in a more unified system. To this end, a Hebbian learning rule for spiking neurons inspired by Bayesian statistics is proposed. In this model, synaptic weights and intrinsic currents are adapted on-line upon arrival of single spikes, which initiate a cascade of temporally interacting memory traces that locally estimate probabilities associated with relative neuronal activation levels. Trace dynamics enable synaptic learning to readily demonstrate a spike-timing dependence, stably return to a set-point over long time scales, and remain competitive despite this stability. Beyond unsupervised learning, linking the traces with an external plasticity-modulating signal enables spike-based reinforcement learning. At the postsynaptic neuron, the traces are represented by an activity-dependent ion channel that is shown to regulate the input received by a postsynaptic cell and generate intrinsic graded persistent firing levels. We show how spike-based Hebbian-Bayesian learning can be performed in a simulated inference task using integrate-and-fire (IAF) neurons that are Poisson-firing and background-driven, similar to the preferred regime of cortical neurons. Our results support the view that neurons can represent information in the form of probability distributions, and that probabilistic inference could be a functional by-product of coupled synaptic and nonsynaptic mechanisms operating over several timescales. The model provides a biophysical realization of Bayesian computation by reconciling several observed neural phenomena whose functional effects are only partially understood in concert. PMID:24782758

  12. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, VOL. XX, NO. X, MONTH 2013 1 A Neuro-Fuzzy Approach for Medical Image Fusion

    E-print Network

    Kundu, Malay Kumar

    , functional images such as position emission tomog- raphy (PET), single-photon emission computed tomography, useful for de- tecting cancer and related metabolic abnormalities. A single modality of medical image pro- cess, and hence often cause blocking effects [3], [4]. Most of the above mentioned schemes

  13. Artificial Intelligence Methods Applied to Parameter Detection of Atrial Fibrillation

    NASA Astrophysics Data System (ADS)

    Arotaritei, D.; Rotariu, C.

    2015-09-01

    In this paper we present a novel method to develop an atrial fibrillation (AF) based on statistical descriptors and hybrid neuro-fuzzy and crisp system. The inference of system produce rules of type if-then-else that care extracted to construct a binary decision system: normal of atrial fibrillation. We use TPR (Turning Point Ratio), SE (Shannon Entropy) and RMSSD (Root Mean Square of Successive Differences) along with a new descriptor, Teager- Kaiser energy, in order to improve the accuracy of detection. The descriptors are calculated over a sliding window that produce very large number of vectors (massive dataset) used by classifier. The length of window is a crisp descriptor meanwhile the rest of descriptors are interval-valued type. The parameters of hybrid system are adapted using Genetic Algorithm (GA) algorithm with fitness single objective target: highest values for sensibility and sensitivity. The rules are extracted and they are part of the decision system. The proposed method was tested using the Physionet MIT-BIH Atrial Fibrillation Database and the experimental results revealed a good accuracy of AF detection in terms of sensitivity and specificity (above 90%).

  14. Statistical Inference After Model Selection Richard Berk

    E-print Network

    Brown, Lawrence D.

    of this literature, we assume in this paper that the idea of a "correct model" makes sense and consider statisticalStatistical Inference After Model Selection Richard Berk Department of Statistics Department of Statistics University of Pennsylvania September 15, 2009 Abstract Conventional statistical inference requires

  15. Computational Vision: Principles of Perceptual Inference

    E-print Network

    Kersten, Dan

    the two together Limited to simple images, tasks #12;6 Ideal observer analysis Brief history in visual1 Computational Vision: Principles of Perceptual Inference Daniel Kersten Psychology, University of Computational Vision ¥ History: Perception as inference Theoretical framework ¥ Pattern theory ¥ Bayesian

  16. The Impact of Disablers on Predictive Inference

    ERIC Educational Resources Information Center

    Cummins, Denise Dellarosa

    2014-01-01

    People consider alternative causes when deciding whether a cause is responsible for an effect (diagnostic inference) but appear to neglect them when deciding whether an effect will occur (predictive inference). Five experiments were conducted to test a 2-part explanation of this phenomenon: namely, (a) that people interpret standard predictive…

  17. INFERENCE GENERATION DURING AUDITORY LANGUAGE COMPREHENSION

    E-print Network

    Osterhout, Lee

    INFERENCE GENERATION DURING AUDITORY LANGUAGE COMPREHENSION David A. Swinney Lee Osterhout I. Introduction It has become nearly axiomatic (and even likely true) to hold that inference generation during the literature rife with observations that while there is little evi- dence of "automatic" generation of certain

  18. The Reasoning behind Informal Statistical Inference

    ERIC Educational Resources Information Center

    Makar, Katie; Bakker, Arthur; Ben-Zvi, Dani

    2011-01-01

    Informal statistical inference (ISI) has been a frequent focus of recent research in statistics education. Considering the role that context plays in developing ISI calls into question the need to be more explicit about the reasoning that underpins ISI. This paper uses educational literature on informal statistical inference and philosophical…

  19. Inferring Learners' Knowledge from Their Actions

    ERIC Educational Resources Information Center

    Rafferty, Anna N.; LaMar, Michelle M.; Griffiths, Thomas L.

    2015-01-01

    Watching another person take actions to complete a goal and making inferences about that person's knowledge is a relatively natural task for people. This ability can be especially important in educational settings, where the inferences can be used for assessment, diagnosing misconceptions, and providing informative feedback. In this paper, we…

  20. Local and Global Thinking in Statistical Inference

    ERIC Educational Resources Information Center

    Pratt, Dave; Johnston-Wilder, Peter; Ainley, Janet; Mason, John

    2008-01-01

    In this reflective paper, we explore students' local and global thinking about informal statistical inference through our observations of 10- to 11-year-olds, challenged to infer the unknown configuration of a virtual die, but able to use the die to generate as much data as they felt necessary. We report how they tended to focus on local changes…

  1. Spatial Inference of Nitrate Concentrations in Groundwater

    E-print Network

    Woodard, Dawn B.

    measurements at a set of locations. We apply this method to obtain inferences for nitrates in groundwater overSpatial Inference of Nitrate Concentrations in Groundwater DAWN B. WOODARD, ROBERT L. WOLPERT in groundwater over the mid-Atlantic states, using measurements gathered during a pe- riod of ten years. A map

  2. Forward and Backward Inference in Spatial Cognition

    PubMed Central

    Penny, Will D.; Zeidman, Peter; Burgess, Neil

    2013-01-01

    This paper shows that the various computations underlying spatial cognition can be implemented using statistical inference in a single probabilistic model. Inference is implemented using a common set of ‘lower-level’ computations involving forward and backward inference over time. For example, to estimate where you are in a known environment, forward inference is used to optimally combine location estimates from path integration with those from sensory input. To decide which way to turn to reach a goal, forward inference is used to compute the likelihood of reaching that goal under each option. To work out which environment you are in, forward inference is used to compute the likelihood of sensory observations under the different hypotheses. For reaching sensory goals that require a chaining together of decisions, forward inference can be used to compute a state trajectory that will lead to that goal, and backward inference to refine the route and estimate control signals that produce the required trajectory. We propose that these computations are reflected in recent findings of pattern replay in the mammalian brain. Specifically, that theta sequences reflect decision making, theta flickering reflects model selection, and remote replay reflects route and motor planning. We also propose a mapping of the above computational processes onto lateral and medial entorhinal cortex and hippocampus. PMID:24348230

  3. Drawing Inferences from a Passage of Texts.

    ERIC Educational Resources Information Center

    Potts, George R.

    The present series of experiments was designed to examine the factors affecting the ability of people to draw inferences from a passage of text. It was found that, using a true-false recognition test, proportion correct was higher and reaction time shorter on inferred information than on information that was actually presented. This was the case…

  4. Investigating noise tolerance in an efficient engine for inferring biological regulatory networks.

    PubMed

    Komori, Asako; Maki, Yukihiro; Ono, Isao; Okamoto, Masahiro

    2015-06-01

    Biological systems are composed of biomolecules such as genes, proteins, metabolites, and signaling components, which interact in complex networks. To understand complex biological systems, it is important to be capable of inferring regulatory networks from experimental time series data. In previous studies, we developed efficient numerical optimization methods for inferring these networks, but we have yet to test the performance of our methods when considering the error (noise) that is inherent in experimental data. In this study, we investigated the noise tolerance of our proposed inferring engine. We prepared the noise data using the Langevin equation, and compared the performance of our method with that of alternative optimization methods. PMID:25790786

  5. Inference-based constraint satisfaction supports explanation

    SciTech Connect

    Sqalli, M.H.; Freuder, E.C.

    1996-12-31

    Constraint satisfaction problems are typically solved using search, augmented by general purpose consistency inference methods. This paper proposes a paradigm shift in which inference is used as the primary problem solving method, and attention is focused on special purpose, domain specific inference methods. While we expect this approach to have computational advantages, we emphasize here the advantages of a solution method that is more congenial to human thought processes. Specifically we use inference-based constraint satisfaction to support explanations of the problem solving behavior that are considerably more meaningful than a trace of a search process would be. Logic puzzles are used as a case study. Inference-based constraint satisfaction proves surprisingly powerful and easily extensible in this domain. Problems drawn from commercial logic puzzle booklets are used for evaluation. Explanations are produced that compare well with the explanations provided by these booklets.

  6. Lower Complexity Bounds for Lifted Inference

    E-print Network

    Jaeger, Manfred

    2012-01-01

    One of the big challenges in the development of probabilistic relational (or probabilistic logical) modeling and learning frameworks is the design of inference techniques that operate on the level of the abstract model representation language, rather than on the level of ground, propositional instances of the model. Numerous approaches for such "lifted inference" techniques have been proposed. While it has been demonstrated that these techniques will lead to significantly more efficient inference on some specific models, there are only very recent and still quite restricted results that show the feasibility of lifted inference on certain syntactically defined classes of models. Lower complexity bounds that imply some limitations for the feasibility of lifted inference on more expressive model classes were established early on in (Jaeger 2000). However, it is not immediate that these results also apply to the type of modeling languages that currently receive the most attention, i.e., weighted, quantifier-free ...

  7. Hierarchical Cosmic Shear Power Spectrum Inference

    E-print Network

    Alsing, Justin; Jaffe, Andrew H; Kiessling, Alina; Wandelt, Benjamin; Hoffmann, Till

    2015-01-01

    We develop a Bayesian hierarchical modelling approach for cosmic shear power spectrum inference, jointly sampling from the posterior distribution of the cosmic shear field and its (tomographic) power spectra. Inference of the shear power spectrum is a powerful intermediate product for a cosmic shear analysis, since it requires very few model assumptions and can be used to perform inference on a wide range of cosmological models \\emph{a posteriori} without loss of information. We show that joint posterior for the shear map and power spectrum can be sampled effectively by Gibbs sampling, iteratively drawing samples from the map and power spectrum, each conditional on the other. This approach neatly circumvents difficulties associated with complicated survey geometry and masks that plague frequentist power spectrum estimators, since the power spectrum inference provides prior information about the field in masked regions at every sampling step. We demonstrate this approach for inference of tomographic shear $E$-...

  8. Adaptive inference for distinguishing credible from incredible patterns in nature

    USGS Publications Warehouse

    Holling, C.S.; Allen, C.R.

    2002-01-01

    Strong inference is a powerful and rapid tool that can be used to identify and explain patterns in molecular biology, cell biology, and physiology. It is effective where causes are single and separable and where discrimination between pairwise alternative hypotheses can be determined experimentally by a simple yes or no answer. But causes in ecological systems are multiple and overlapping and are not entirely separable. Frequently, competing hypotheses cannot be distinguished by a single unambiguous test, but only by a suite of tests of different kinds, that produce a body of evidence to support one line of argument and not others. We call this process "adaptive inference". Instead of pitting each member of a pair of hypotheses against each other, adaptive inference relies on the exuberant invention of multiple, competing hypotheses, after which carefully structured comparative data are used to explore the logical consequences of each. Herein we present an example that demonstrates the attributes of adaptive inference that have developed out of a 30-year study of the resilience of ecosystems.

  9. Causal inference and the hierarchical structure of experience

    PubMed Central

    Johnson, Samuel G. B.; Keil, Frank C.

    2014-01-01

    Children and adults make rich causal inferences about the physical and social world, even in novel situations where they cannot rely on prior knowledge of causal mechanisms. We propose that this capacity is supported in part by constraints provided by event structure—the cognitive organization of experience into discrete events that are hierarchically organized. These event-structured causal inferences are guided by a level-matching principle, with events conceptualized at one level of an event hierarchy causally matched to other events at that same level, and a boundary-blocking principle, with events causally matched to other events that are parts of the same superordinate event. These principles are used to constrain inferences about plausible causal candidates in unfamiliar situations, both in diagnosing causes (Experiment 1) and predicting effects (Experiment 2). The results could not be explained by construal level (Experiment 3) or similarity-matching (Experiment 4), and were robust across a variety of physical and social causal systems. Taken together, these experiments demonstrate a novel way in which non-causal information we extract from the environment can help to constrain inferences about causal structure. PMID:25347533

  10. Efficient Bayesian inference for natural time series using ARFIMA processes

    NASA Astrophysics Data System (ADS)

    Graves, T.; Gramacy, R. B.; Franzke, C. L. E.; Watkins, N. W.

    2015-11-01

    Many geophysical quantities, such as atmospheric temperature, water levels in rivers, and wind speeds, have shown evidence of long memory (LM). LM implies that these quantities experience non-trivial temporal memory, which potentially not only enhances their predictability, but also hampers the detection of externally forced trends. Thus, it is important to reliably identify whether or not a system exhibits LM. In this paper we present a modern and systematic approach to the inference of LM. We use the flexible autoregressive fractional integrated moving average (ARFIMA) model, which is widely used in time series analysis, and of increasing interest in climate science. Unlike most previous work on the inference of LM, which is frequentist in nature, we provide a systematic treatment of Bayesian inference. In particular, we provide a new approximate likelihood for efficient parameter inference, and show how nuisance parameters (e.g., short-memory effects) can be integrated over in order to focus on long-memory parameters and hypothesis testing more directly. We illustrate our new methodology on the Nile water level data and the central England temperature (CET) time series, with favorable comparison to the standard estimators. For CET we also extend our method to seasonal long memory.

  11. A Network Inference Workflow Applied to Virulence-Related Processes in Salmonella typhimurium

    SciTech Connect

    Taylor, Ronald C.; Singhal, Mudita; Weller, Jennifer B.; Khoshnevis, Saeed; Shi, Liang; McDermott, Jason E.

    2009-04-20

    Inference of the structure of mRNA transcriptional regulatory networks, protein regulatory or interaction networks, and protein activation/inactivation-based signal transduction networks are critical tasks in systems biology. In this article we discuss a workflow for the reconstruction of parts of the transcriptional regulatory network of the pathogenic bacterium Salmonella typhimurium based on the information contained in sets of microarray gene expression data now available for that organism, and describe our results obtained by following this workflow. The primary tool is one of the network inference algorithms deployed in the Software Environment for BIological Network Inference (SEBINI). Specifically, we selected the algorithm called Context Likelihood of Relatedness (CLR), which uses the mutual information contained in the gene expression data to infer regulatory connections. The associated analysis pipeline automatically stores the inferred edges from the CLR runs within SEBINI and, upon request, transfers the inferred edges into either Cytoscape or the plug-in Collective Analysis of Biological of Biological Interaction Networks (CABIN) tool for further post-analysis of the inferred regulatory edges. The following article presents the outcome of this workflow, as well as the protocols followed for microarray data collection, data cleansing, and network inference. Our analysis revealed several interesting interactions, functional groups, metabolic pathways, and regulons in S. typhimurium.

  12. Robust semi-active control for uncertain structures and smart dampers

    NASA Astrophysics Data System (ADS)

    Yeganeh Fallah, Arash; Taghikhany, Touraj

    2014-09-01

    Recent developments in semi-active control technology have led to its application in civil infrastructures as an efficient strategy to protect susceptible structures against seismic and wind induced vibration. The reliable and robust performance of semi-active systems depends on the level of uncertainties in the structural parameters as well as on the sensors’ measurement and on smart mechanical dampers. A common source of uncertainties in semi-active control devices is related to the inherent nonlinear nature of these devices, thermal variation, or their malfunctioning. This study deals with the robust H? control problem and aims to model different sources of uncertainty. The uncertainty of the structural model and damper force are assumed to be norm bounded random variables. By using linear fractional transformation (LFT), the uncertain part of the system is decoupled from the nominal parameters of the system. The robust H? controller is designed to achieve consistent performance in structures including nominal and perturbed dynamics. Additionally, to reduce the uncertainty of the damper force, an inverse model of the magnetorheological (MR) damper is developed based on an adaptive neuro-fuzzy inference system (ANFIS). The robustness of the proposed algorithm is validated by numerical simulations.

  13. Causal Inference in Public Health

    PubMed Central

    Glass, Thomas A.; Goodman, Steven N.; Hernán, Miguel A.; Samet, Jonathan M.

    2014-01-01

    Causal inference has a central role in public health; the determination that an association is causal indicates the possibility for intervention. We review and comment on the long-used guidelines for interpreting evidence as supporting a causal association and contrast them with the potential outcomes framework that encourages thinking in terms of causes that are interventions. We argue that in public health this framework is more suitable, providing an estimate of an action’s consequences rather than the less precise notion of a risk factor’s causal effect. A variety of modern statistical methods adopt this approach. When an intervention cannot be specified, causal relations can still exist, but how to intervene to change the outcome will be unclear. In application, the often-complex structure of causal processes needs to be acknowledged and appropriate data collected to study them. These newer approaches need to be brought to bear on the increasingly complex public health challenges of our globalized world. PMID:23297653

  14. Saturn's ionosphere: Inferred electron densities

    NASA Technical Reports Server (NTRS)

    Kaiser, M. L.; Desch, M. D.; Connerney, J. E. P.

    1983-01-01

    During the two Voyager encounters with Saturn, radio bursts were detected which appear to have originated from atmospheric lightning storms. Although these bursts generally extended over frequencies from as low as 100 kHz to the upper detection limit of the instrument, 40 MHz, they often exhibited a sharp but variable low frequency cutoff below which bursts were not detected. We interpret the variable low-frequency extent of these bursts to be due to the reflection of the radio waves as they propagate through an ionosphere which varies with local time. We obtain estimates of electron densities at a variety of latitude and local time locations. These compare well with the dawn and dusk densitis measured by the Pioneer 11 Voyager Radio Science investigations, and with model predictions for dayside densities. However, we infer a two-order-of-magnitude diurnal variation of electron density, which had not been anticipated by theoretical models of Saturn's ionosphere, and an equally dramatic extinction of ionospheric electron density by Saturn's rings.

  15. Active inference and epistemic value.

    PubMed

    Friston, Karl; Rigoli, Francesco; Ognibene, Dimitri; Mathys, Christoph; Fitzgerald, Thomas; Pezzulo, Giovanni

    2015-12-01

    We offer a formal treatment of choice behavior based on the premise that agents minimize the expected free energy of future outcomes. Crucially, the negative free energy or quality of a policy can be decomposed into extrinsic and epistemic (or intrinsic) value. Minimizing expected free energy is therefore equivalent to maximizing extrinsic value or expected utility (defined in terms of prior preferences or goals), while maximizing information gain or intrinsic value (or reducing uncertainty about the causes of valuable outcomes). The resulting scheme resolves the exploration-exploitation dilemma: Epistemic value is maximized until there is no further information gain, after which exploitation is assured through maximization of extrinsic value. This is formally consistent with the Infomax principle, generalizing formulations of active vision based upon salience (Bayesian surprise) and optimal decisions based on expected utility and risk-sensitive (Kullback-Leibler) control. Furthermore, as with previous active inference formulations of discrete (Markovian) problems, ad hoc softmax parameters become the expected (Bayes-optimal) precision of beliefs about, or confidence in, policies. This article focuses on the basic theory, illustrating the ideas with simulations. A key aspect of these simulations is the similarity between precision updates and dopaminergic discharges observed in conditioning paradigms. PMID:25689102

  16. Redshift data and statistical inference

    NASA Technical Reports Server (NTRS)

    Newman, William I.; Haynes, Martha P.; Terzian, Yervant

    1994-01-01

    Frequency histograms and the 'power spectrum analysis' (PSA) method, the latter developed by Yu & Peebles (1969), have been widely employed as techniques for establishing the existence of periodicities. We provide a formal analysis of these two classes of methods, including controlled numerical experiments, to better understand their proper use and application. In particular, we note that typical published applications of frequency histograms commonly employ far greater numbers of class intervals or bins than is advisable by statistical theory sometimes giving rise to the appearance of spurious patterns. The PSA method generates a sequence of random numbers from observational data which, it is claimed, is exponentially distributed with unit mean and variance, essentially independent of the distribution of the original data. We show that the derived random processes is nonstationary and produces a small but systematic bias in the usual estimate of the mean and variance. Although the derived variable may be reasonably described by an exponential distribution, the tail of the distribution is far removed from that of an exponential, thereby rendering statistical inference and confidence testing based on the tail of the distribution completely unreliable. Finally, we examine a number of astronomical examples wherein these methods have been used giving rise to widespread acceptance of statistically unconfirmed conclusions.

  17. A method based on multi-sensor data fusion for fault detection of planetary gearboxes.

    PubMed

    Lei, Yaguo; Lin, Jing; He, Zhengjia; Kong, Detong

    2012-01-01

    Studies on fault detection and diagnosis of planetary gearboxes are quite limited compared with those of fixed-axis gearboxes. Different from fixed-axis gearboxes, planetary gearboxes exhibit unique behaviors, which invalidate fault diagnosis methods that work well for fixed-axis gearboxes. It is a fact that for systems as complex as planetary gearboxes, multiple sensors mounted on different locations provide complementary information on the health condition of the systems. On this basis, a fault detection method based on multi-sensor data fusion is introduced in this paper. In this method, two features developed for planetary gearboxes are used to characterize the gear health conditions, and an adaptive neuro-fuzzy inference system (ANFIS) is utilized to fuse all features from different sensors. In order to demonstrate the effectiveness of the proposed method, experiments are carried out on a planetary gearbox test rig, on which multiple accelerometers are mounted for data collection. The comparisons between the proposed method and the methods based on individual sensors show that the former achieves much higher accuracies in detecting planetary gearbox faults. PMID:22438750

  18. A Method Based on Multi-Sensor Data Fusion for Fault Detection of Planetary Gearboxes

    PubMed Central

    Lei, Yaguo; Lin, Jing; He, Zhengjia; Kong, Detong

    2012-01-01

    Studies on fault detection and diagnosis of planetary gearboxes are quite limited compared with those of fixed-axis gearboxes. Different from fixed-axis gearboxes, planetary gearboxes exhibit unique behaviors, which invalidate fault diagnosis methods that work well for fixed-axis gearboxes. It is a fact that for systems as complex as planetary gearboxes, multiple sensors mounted on different locations provide complementary information on the health condition of the systems. On this basis, a fault detection method based on multi-sensor data fusion is introduced in this paper. In this method, two features developed for planetary gearboxes are used to characterize the gear health conditions, and an adaptive neuro-fuzzy inference system (ANFIS) is utilized to fuse all features from different sensors. In order to demonstrate the effectiveness of the proposed method, experiments are carried out on a planetary gearbox test rig, on which multiple accelerometers are mounted for data collection. The comparisons between the proposed method and the methods based on individual sensors show that the former achieves much higher accuracies in detecting planetary gearbox faults. PMID:22438750

  19. Simultaneous Inference for Multiple Testing and Clustering via

    E-print Network

    Dahl, David B.

    Simultaneous Inference for Multiple Testing and Clustering via Dirichlet Process Mixture Models (200?), Simultaneous Inference for Multiple Testing and Clustering via a Dirichlet Process Mixture via a Dirichlet Process Mixture Model, in "Bayesian Inference for Gene Expression and Proteomics," Kim

  20. Motivation Beam sampling the iHMM Variational Inference for DP mixture models Collapsed Variational Inference for HDP Hybr Less inefficient inference in Nonparametric Bayesian

    E-print Network

    Pratt, Vaughan

    Motivation Beam sampling the iHMM Variational Inference for DP mixture models Collapsed Variational, 2009 #12;Motivation Beam sampling the iHMM Variational Inference for DP mixture models Collapsed Variational Inference for HDP Hybr Outline 1 Motivation 2 Beam sampling the iHMM 3 Variational Inference

  1. On Bayesian Inductive Inference & Predictive Estimation

    NASA Technical Reports Server (NTRS)

    Cheeseman, Peter; Stutz, John; Smelyanskiy, Vadim

    2004-01-01

    We investigate Bayesian inference and the Principle of Maximum Entropy (PME) as methods for doing inference under uncertainty. This investigation is primarily through concrete examples that have been previously investigated in the literature. We find that it is possible to do Bayesian inference and PME inference using the same information, despite claims to the contrary, but that the results are not directly comparable. This is because Bayesian inference yields a probability density function (pdf) over the unknown model parameters, whereas PME yields point estimates. If mean estimates are extracted from the Bayesian pdfs, the resulting parameter estimates can differ radically from the PME values and also from the Maximum Likelihood values. We conclude that these differences are due to the Bayesian inference not assuming anything beyond the given prior probabilities and the data, whereas PME implicitly assumes that the given constraints are the only constraints that are operating. Since this assumption can be wrong, PME values may have to be revised when subsequent data shows evidence for more constraints. The entropy concentration previously "proved" by E. T. Jaynes is shown to be in error. Further, we show that PME is a generalized form of independence assumption, and so can be a very powerful method of inference when the variables being investigated are largely independent of each other.

  2. Knowledge-based inference engine for online video dissemination

    NASA Astrophysics Data System (ADS)

    Zhou, Wensheng; Kuo, C.-C. Jay

    2000-10-01

    To facilitate easy access to rich information of multimedia over the Internet, we develop a knowledge-based classification system that supports automatic Indexing and filtering based on semantic concepts for the dissemination of on-line real-time media. Automatic segmentation, annotation and summarization of media for fast information browsing and updating are achieved in the same time. In the proposed system, a real-time scene-change detection proxy performs an initial video structuring process by splitting a video clip into scenes. Motional and visual features are extracted in real time for every detected scene by using online feature extraction proxies. Higher semantics are then derived through a joint use of low-level features along with inference rules in the knowledge base. Inference rules are derived through a supervised learning process based on representative samples. On-line media filtering based on semantic concepts becomes possible by using the proposed video inference engine. Video streams are either blocked or sent to certain channels depending on whether or not the video stream is matched with the user's profile. The proposed system is extensively evaluated by applying the engine to video of basketball games.

  3. A tutorial on time-evolving dynamical Bayesian inference

    NASA Astrophysics Data System (ADS)

    Stankovski, Tomislav; Duggento, Andrea; McClintock, Peter V. E.; Stefanovska, Aneta

    2014-12-01

    In view of the current availability and variety of measured data, there is an increasing demand for powerful signal processing tools that can cope successfully with the associated problems that often arise when data are being analysed. In practice many of the data-generating systems are not only time-variable, but also influenced by neighbouring systems and subject to random fluctuations (noise) from their environments. To encompass problems of this kind, we present a tutorial about the dynamical Bayesian inference of time-evolving coupled systems in the presence of noise. It includes the necessary theoretical description and the algorithms for its implementation. For general programming purposes, a pseudocode description is also given. Examples based on coupled phase and limit-cycle oscillators illustrate the salient features of phase dynamics inference. State domain inference is illustrated with an example of coupled chaotic oscillators. The applicability of the latter example to secure communications based on the modulation of coupling functions is outlined. MatLab codes for implementation of the method, as well as for the explicit examples, accompany the tutorial.

  4. Integration of ANFIS, NN and GA to determine core porosity and permeability from conventional well log data

    NASA Astrophysics Data System (ADS)

    Ja'fari, Ahmad; Hamidzadeh Moghadam, Rasoul

    2012-10-01

    Routine core analysis provides useful information for petrophysical study of the hydrocarbon reservoirs. Effective porosity and fluid conductivity (permeability) could be obtained from core analysis in laboratory. Coring hydrocarbon bearing intervals and analysis of obtained cores in laboratory is expensive and time consuming. In this study an improved method to make a quantitative correlation between porosity and permeability obtained from core and conventional well log data by integration of different artificial intelligent systems is proposed. The proposed method combines the results of adaptive neuro-fuzzy inference system (ANFIS) and neural network (NN) algorithms for overall estimation of core data from conventional well log data. These methods multiply the output of each algorithm with a weight factor. Simple averaging and weighted averaging were used for determining the weight factors. In the weighted averaging method the genetic algorithm (GA) is used to determine the weight factors. The overall algorithm was applied in one of SW Iran’s oil fields with two cored wells. One-third of all data were used as the test dataset and the rest of them were used for training the networks. Results show that the output of the GA averaging method provided the best mean square error and also the best correlation coefficient with real core data.

  5. Inference dynamics in transcriptional regulation 

    E-print Network

    Asif, Hafiz Muhammad Shahzad

    2012-06-25

    Computational systems biology is an emerging area of research that focuses on understanding the holistic view of complex biological systems with the help of statistical, mathematical and computational techniques. The ...

  6. Attention as a Bayesian inference process

    E-print Network

    Chikkerur, Sharat

    David Marr famously defined vision as "knowing what is where by seeing". In the framework described here, attention is the inference process that solves the visual recognition problem of what is where. The theory proposes ...

  7. Bayesian inference of stochastic dynamical models

    E-print Network

    Lu, Peter Guang Yi

    2013-01-01

    A new methodology for Bayesian inference of stochastic dynamical models is developed. The methodology leverages the dynamically orthogonal (DO) evolution equations for reduced-dimension uncertainty evolution and the Gaussian ...

  8. Early word learning through communicative inference

    E-print Network

    Frank, Michael C., Ph. D. Massachusetts Institute of Technology

    2010-01-01

    How do children learn their first words? Do they do it by gradually accumulating information about the co-occurrence of words and their referents over time, or are words learned via quick social inferences linking what ...

  9. Statistical inference in population genetics using microsatellites 

    E-print Network

    Csilléry, Katalin

    2009-01-01

    Statistical inference from molecular population genetic data is currently a very active area of research for two main reasons. First, in the past two decades an enormous amount of molecular genetic data have been produced ...

  10. Multisensory Causal Inference in the Brain

    PubMed Central

    Kayser, Christoph; Shams, Ladan

    2015-01-01

    At any given moment, our brain processes multiple inputs from its different sensory modalities (vision, hearing, touch, etc.). In deciphering this array of sensory information, the brain has to solve two problems: (1) which of the inputs originate from the same object and should be integrated and (2) for the sensations originating from the same object, how best to integrate them. Recent behavioural studies suggest that the human brain solves these problems using optimal probabilistic inference, known as Bayesian causal inference. However, how and where the underlying computations are carried out in the brain have remained unknown. By combining neuroimaging-based decoding techniques and computational modelling of behavioural data, a new study now sheds light on how multisensory causal inference maps onto specific brain areas. The results suggest that the complexity of neural computations increases along the visual hierarchy and link specific components of the causal inference process with specific visual and parietal regions. PMID:25710476

  11. Lifted Probabilistic Inference with Counting Formulas

    E-print Network

    Haimes, Michael M.

    Lifted inference algorithms exploit repeated structure in probabilistic models to answer queries efficiently. Previous work such as de Salvo Braz et al.'s first-order variable elimination (FOVE) has focused on the sharing ...

  12. Lifted Probabilistic Inference with Counting Formulas

    E-print Network

    Milch, Brian

    2008-01-01

    Lifted inference algorithms exploit repeated structure in probabilistic models to answer queries efficiently. Previous work such as de Salvo Braz et al.'s first-order variable elimination (FOVE) has focused on the sharing ...

  13. Approximate inference in Gaussian graphical models

    E-print Network

    Malioutov, Dmitry M., 1981-

    2008-01-01

    The focus of this thesis is approximate inference in Gaussian graphical models. A graphical model is a family of probability distributions in which the structure of interactions among the random variables is captured by a ...

  14. Latent source models for nonparametric inference

    E-print Network

    Chen, George H

    2015-01-01

    Nearest-neighbor inference methods have been widely and successfully used in numerous applications such as forecasting which news topics will go viral, recommending products to people in online stores, and delineating ...

  15. Southern flounder (Paralichthys lethostigma) stock structure inferred

    E-print Network

    326 Southern flounder (Paralichthys lethostigma) stock structure inferred from otolith shape Wilmington 601 South College Road Wilmington, North Carolina 28403 Present address for contact author for Marine Science and Technology University of Massachusetts Dartmouth 200 Mill Road, Suite 325 Fairhaven

  16. Inference and Visualization of Periodic Sequences 

    E-print Network

    Sun, Ying

    2011-10-21

    -Chairs of Committee, Jeffrey D. Hart Marc G. Genton Committee Members, Raymond J. Carroll Kenneth P. Bowman Head of Department, Simon J. Sheather August 2011 Major Subject: Statistics iii ABSTRACT Inference and Visualization of Periodic Sequences. (August 2011...) Ying Sun, M.S., Tsinghua University Co?Chairs of Advisory Committee: Dr. Jeffrey D. Hart Dr. Marc G. Genton This dissertation is composed of four articles describing inference and visualiza- tion of periodic sequences. In the first article, a...

  17. Inference of isoforms from short sequence reads.

    PubMed

    Feng, Jianxing; Li, Wei; Jiang, Tao

    2011-03-01

    Due to alternative splicing events in eukaryotic species, the identification of mRNA isoforms (or splicing variants) is a difficult problem. Traditional experimental methods for this purpose are time consuming and cost ineffective. The emerging RNA-Seq technology provides a possible effective method to address this problem. Although the advantages of RNA-Seq over traditional methods in transcriptome analysis have been confirmed by many studies, the inference of isoforms from millions of short sequence reads (e.g., Illumina/Solexa reads) has remained computationally challenging. In this work, we propose a method to calculate the expression levels of isoforms and infer isoforms from short RNA-Seq reads using exon-intron boundary, transcription start site (TSS) and poly-A site (PAS) information. We first formulate the relationship among exons, isoforms, and single-end reads as a convex quadratic program, and then use an efficient algorithm (called IsoInfer) to search for isoforms. IsoInfer can calculate the expression levels of isoforms accurately if all the isoforms are known and infer novel isoforms from scratch. Our experimental tests on known mouse isoforms with both simulated expression levels and reads demonstrate that IsoInfer is able to calculate the expression levels of isoforms with an accuracy comparable to the state-of-the-art statistical method and a 60 times faster speed. Moreover, our tests on both simulated and real reads show that it achieves a good precision and sensitivity in inferring isoforms when given accurate exon-intron boundary, TSS, and PAS information, especially for isoforms whose expression levels are significantly high. The software is publicly available for free at http://www.cs.ucr.edu/?jianxing/IsoInfer.html. PMID:21385036

  18. Inferring the Intrinsic Ellipticity Distribution of Galaxies

    NASA Astrophysics Data System (ADS)

    Schneider, Michael; Dawson, William; Hogg, David W.; Marshall, Philip J.; Meyers, Joshua; Bard, Deborah J.; Lang, Dustin

    2015-01-01

    The unknown distribution of intrinsic galaxy shapes is a primary source of systematic error in the measurement of the gravitational lensing distortion of galaxy images, or cosmic shear. By simultaneously inferring the distribution of galaxy morphologies disambiguated from lensing, we can achieve gains in gravitational lensing precision and learn about the evolution of galaxy morphologies over cosmic time. We present a flexible statistical model to perform this joint inference and demonstrate the implementation with simulated data.

  19. Inferring ethnicity from mitochondrial DNA sequence

    PubMed Central

    2011-01-01

    Background The assignment of DNA samples to coarse population groups can be a useful but difficult task. One such example is the inference of coarse ethnic groupings for forensic applications. Ethnicity plays an important role in forensic investigation and can be inferred with the help of genetic markers. Being maternally inherited, of high copy number, and robust persistence in degraded samples, mitochondrial DNA may be useful for inferring coarse ethnicity. In this study, we compare the performance of methods for inferring ethnicity from the sequence of the hypervariable region of the mitochondrial genome. Results We present the results of comprehensive experiments conducted on datasets extracted from the mtDNA population database, showing that ethnicity inference based on support vector machines (SVM) achieves an overall accuracy of 80-90%, consistently outperforming nearest neighbor and discriminant analysis methods previously proposed in the literature. We also evaluate methods of handling missing data and characterize the most informative segments of the hypervariable region of the mitochondrial genome. Conclusions Support vector machines can be used to infer coarse ethnicity from a small region of mitochondrial DNA sequence with surprisingly high accuracy. In the presence of missing data, utilizing only the regions common to the training sequences and a test sequence proves to be the best strategy. Given these results, SVM algorithms are likely to also be useful in other DNA sequence classification applications. PMID:21554759

  20. Quantitative Epistasis Analysis and Pathway Inference from Genetic Interaction Data

    PubMed Central

    Phenix, Hilary; Morin, Katy; Batenchuk, Cory; Parker, Jacob; Abedi, Vida; Yang, Liu; Tepliakova, Lioudmila; Perkins, Theodore J.; Kærn, Mads

    2011-01-01

    Inferring regulatory and metabolic network models from quantitative genetic interaction data remains a major challenge in systems biology. Here, we present a novel quantitative model for interpreting epistasis within pathways responding to an external signal. The model provides the basis of an experimental method to determine the architecture of such pathways, and establishes a new set of rules to infer the order of genes within them. The method also allows the extraction of quantitative parameters enabling a new level of information to be added to genetic network models. It is applicable to any system where the impact of combinatorial loss-of-function mutations can be quantified with sufficient accuracy. We test the method by conducting a systematic analysis of a thoroughly characterized eukaryotic gene network, the galactose utilization pathway in Saccharomyces cerevisiae. For this purpose, we quantify the effects of single and double gene deletions on two phenotypic traits, fitness and reporter gene expression. We show that applying our method to fitness traits reveals the order of metabolic enzymes and the effects of accumulating metabolic intermediates. Conversely, the analysis of expression traits reveals the order of transcriptional regulatory genes, secondary regulatory signals and their relative strength. Strikingly, when the analyses of the two traits are combined, the method correctly infers ?80% of the known relationships without any false positives. PMID:21589890

  1. Quantitative epistasis analysis and pathway inference from genetic interaction data.

    PubMed

    Phenix, Hilary; Morin, Katy; Batenchuk, Cory; Parker, Jacob; Abedi, Vida; Yang, Liu; Tepliakova, Lioudmila; Perkins, Theodore J; Kærn, Mads

    2011-05-01

    Inferring regulatory and metabolic network models from quantitative genetic interaction data remains a major challenge in systems biology. Here, we present a novel quantitative model for interpreting epistasis within pathways responding to an external signal. The model provides the basis of an experimental method to determine the architecture of such pathways, and establishes a new set of rules to infer the order of genes within them. The method also allows the extraction of quantitative parameters enabling a new level of information to be added to genetic network models. It is applicable to any system where the impact of combinatorial loss-of-function mutations can be quantified with sufficient accuracy. We test the method by conducting a systematic analysis of a thoroughly characterized eukaryotic gene network, the galactose utilization pathway in Saccharomyces cerevisiae. For this purpose, we quantify the effects of single and double gene deletions on two phenotypic traits, fitness and reporter gene expression. We show that applying our method to fitness traits reveals the order of metabolic enzymes and the effects of accumulating metabolic intermediates. Conversely, the analysis of expression traits reveals the order of transcriptional regulatory genes, secondary regulatory signals and their relative strength. Strikingly, when the analyses of the two traits are combined, the method correctly infers ~80% of the known relationships without any false positives. PMID:21589890

  2. The NIRS Analysis Package: noise reduction and statistical inference.

    PubMed

    Fekete, Tomer; Rubin, Denis; Carlson, Joshua M; Mujica-Parodi, Lilianne R

    2011-01-01

    Near infrared spectroscopy (NIRS) is a non-invasive optical imaging technique that can be used to measure cortical hemodynamic responses to specific stimuli or tasks. While analyses of NIRS data are normally adapted from established fMRI techniques, there are nevertheless substantial differences between the two modalities. Here, we investigate the impact of NIRS-specific noise; e.g., systemic (physiological), motion-related artifacts, and serial autocorrelations, upon the validity of statistical inference within the framework of the general linear model. We present a comprehensive framework for noise reduction and statistical inference, which is custom-tailored to the noise characteristics of NIRS. These methods have been implemented in a public domain Matlab toolbox, the NIRS Analysis Package (NAP). Finally, we validate NAP using both simulated and actual data, showing marked improvement in the detection power and reliability of NIRS. PMID:21912687

  3. Modeling Escherichia coli removal in constructed wetlands under pulse loading.

    PubMed

    Hamaamin, Yaseen A; Adhikari, Umesh; Nejadhashemi, A Pouyan; Harrigan, Timothy; Reinhold, Dawn M

    2014-03-01

    Manure-borne pathogens are a threat to water quality and have resulted in disease outbreaks globally. Land application of livestock manure to croplands may result in pathogen transport through surface runoff and tile drains, eventually entering water bodies such as rivers and wetlands. The goal of this study was to develop a robust model for estimating the pathogen removal in surface flow wetlands under pulse loading conditions. A new modeling approach was used to describe Escherichia coli removal in pulse-loaded constructed wetlands using adaptive neuro-fuzzy inference systems (ANFIS). Several ANFIS models were developed and validated using experimental data under pulse loading over two seasons (winter and summer). In addition to ANFIS, a mechanistic fecal coliform removal model was validated using the same sets of experimental data. The results showed that the ANFIS model significantly improved the ability to describe the dynamics of E. coli removal under pulse loading. The mechanistic model performed poorly as demonstrated by lower coefficient of determination and higher root mean squared error compared to the ANFIS models. The E. coli concentrations corresponding to the inflection points on the tracer study were keys to improving the predictability of the E. coli removal model. PMID:24231031

  4. Geospatial and machine learning techniques for wicked social science problems: analysis of crash severity on a regional highway corridor

    NASA Astrophysics Data System (ADS)

    Effati, Meysam; Thill, Jean-Claude; Shabani, Shahin

    2015-04-01

    The contention of this paper is that many social science research problems are too "wicked" to be suitably studied using conventional statistical and regression-based methods of data analysis. This paper argues that an integrated geospatial approach based on methods of machine learning is well suited to this purpose. Recognizing the intrinsic wickedness of traffic safety issues, such approach is used to unravel the complexity of traffic crash severity on highway corridors as an example of such problems. The support vector machine (SVM) and coactive neuro-fuzzy inference system (CANFIS) algorithms are tested as inferential engines to predict crash severity and uncover spatial and non-spatial factors that systematically relate to crash severity, while a sensitivity analysis is conducted to determine the relative influence of crash severity factors. Different specifications of the two methods are implemented, trained, and evaluated against crash events recorded over a 4-year period on a regional highway corridor in Northern Iran. Overall, the SVM model outperforms CANFIS by a notable margin. The combined use of spatial analysis and artificial intelligence is effective at identifying leading factors of crash severity, while explicitly accounting for spatial dependence and spatial heterogeneity effects. Thanks to the demonstrated effectiveness of a sensitivity analysis, this approach produces comprehensive results that are consistent with existing traffic safety theories and supports the prioritization of effective safety measures that are geographically targeted and behaviorally sound on regional highway corridors.

  5. Modeling of thermal expansion coefficient of perovskite oxide for solid oxide fuel cell cathode

    NASA Astrophysics Data System (ADS)

    Heydari, F.; Maghsoudipour, A.; Alizadeh, M.; Khakpour, Z.; Javaheri, M.

    2015-09-01

    Artificial intelligence models have the capacity to eliminate the need for expensive experimental investigation in various areas of manufacturing processes, including the material science. This study investigates the applicability of adaptive neuro-fuzzy inference system (ANFIS) approach for modeling the performance parameters of thermal expansion coefficient (TEC) of perovskite oxide for solid oxide fuel cell cathode. Oxides (Ln = La, Nd, Sm and M = Fe, Ni, Mn) have been prepared and characterized to study the influence of the different cations on TEC. Experimental results have shown TEC decreases favorably with substitution of Nd3+ and Mn3+ ions in the lattice. Structural parameters of compounds have been determined by X-ray diffraction, and field emission scanning electron microscopy has been used for the morphological study. Comparison results indicated that the ANFIS technique could be employed successfully in modeling thermal expansion coefficient of perovskite oxide for solid oxide fuel cell cathode, and considerable savings in terms of cost and time could be obtained by using ANFIS technique.

  6. Detection of bilayer lipid with graphene nanoribbon

    NASA Astrophysics Data System (ADS)

    Akbari, Elnaz; Buntat, Zolkafle; Afroozeh, Abdolkarim; Zeinalinezhad, Alireza; Nilashi, Mehrbakhsh

    2015-09-01

    Single-layer graphene consists of sp 2-bonded carbon atoms arranged in a two-dimensional (2D) hexagonal lattice comprising a thin layer of single carbon atoms. Owing to its special characteristics including electrical, physical, and optical properties, graphene is considered more suitable for sensor applications than other materials. Moreover, it is possible to produce biosensors using electrolyte-gated field-effect transistors based on graphene (GFETs) to identify the alterations in charged lipid membrane properties. This paper illustrates how membrane thickness and electrical charge can result in a monolayer GFET, with emphasis on conductance variation. It is proposed that the thickness and electrical charge of the lipid bilayer are functions of carrier density, and equations relating these suitable control parameters were derived. Adaptive neuro fuzzy inference system (ANFIS) has been incorporated to obtain other model for conductance characteristic. The comparison between the analytical models and ANFIS with the experimental data extracted from previous work show an acceptable agreement. [Figure not available: see fulltext.

  7. A modified dynamic evolving neural-fuzzy approach to modeling customer satisfaction for affective design.

    PubMed

    Kwong, C K; Fung, K Y; Jiang, Huimin; Chan, K Y; Siu, Kin Wai Michael

    2013-01-01

    Affective design is an important aspect of product development to achieve a competitive edge in the marketplace. A neural-fuzzy network approach has been attempted recently to model customer satisfaction for affective design and it has been proved to be an effective one to deal with the fuzziness and non-linearity of the modeling as well as generate explicit customer satisfaction models. However, such an approach to modeling customer satisfaction has two limitations. First, it is not suitable for the modeling problems which involve a large number of inputs. Second, it cannot adapt to new data sets, given that its structure is fixed once it has been developed. In this paper, a modified dynamic evolving neural-fuzzy approach is proposed to address the above mentioned limitations. A case study on the affective design of mobile phones was conducted to illustrate the effectiveness of the proposed methodology. Validation tests were conducted and the test results indicated that: (1) the conventional Adaptive Neuro-Fuzzy Inference System (ANFIS) failed to run due to a large number of inputs; (2) the proposed dynamic neural-fuzzy model outperforms the subtractive clustering-based ANFIS model and fuzzy c-means clustering-based ANFIS model in terms of their modeling accuracy and computational effort. PMID:24385884

  8. Structure-Activity Relationship for Fe(III)-Salen-Like Complexes as Potent Anticancer Agents

    PubMed Central

    Ghanbari, Zahra; Housaindokht, Mohammad R.; Izadyar, Mohammad; Bozorgmehr, Mohammad R.; Eshtiagh-Hosseini, Hossein; Bahrami, Ahmad R.; Matin, Maryam M.; Khoshkholgh, Maliheh Javan

    2014-01-01

    Quantitative structure activity relationship (QSAR) for the anticancer activity of Fe(III)-salen and salen-like complexes was studied. The methods of density function theory (B3LYP/LANL2DZ) were used to optimize the structures. A pool of descriptors was calculated: 1497 theoretical descriptors and quantum-chemical parameters, shielding NMR, and electronic descriptors. The study of structure and activity relationship was performed with multiple linear regression (MLR) and artificial neural network (ANN). In nonlinear method, the adaptive neuro-fuzzy inference system (ANFIS) was applied in order to choose the most effective descriptors. The ANN-ANFIS model with high statistical significance (R2train = 0.99, RMSE = 0.138, and Q2LOO = 0.82) has better capability to predict the anticancer activity of the new compounds series of this family. Based on this study, anticancer activity of this compound is mainly dependent on the geometrical parameters, position, and the nature of the substituent of salen ligand. PMID:24955417

  9. Process Control Strategies for Dual-Phase Steel Manufacturing Using ANN and ANFIS

    NASA Astrophysics Data System (ADS)

    Vafaeenezhad, H.; Ghanei, S.; Seyedein, S. H.; Beygi, H.; Mazinani, M.

    2014-11-01

    In this research, a comprehensive soft computational approach is presented for the analysis of the influencing parameters on manufacturing of dual-phase steels. A set of experimental data have been gathered to obtain the initial database used for the training and testing of both artificial neural networks (ANN) and adaptive neuro-fuzzy inference system (ANFIS). The parameters used in the strategy were intercritical annealing temperature, carbon content, and holding time which gives off martensite percentage as an output. A fraction of the data set was chosen to train both ANN and ANFIS, and the rest was put into practice to authenticate the act of the trained networks while seeing unseen data. To compare the obtained results, coefficient of determination and root mean squared error indexes were chosen. Using artificial intelligence methods, it is not necessary to consider and establish a preliminary mathematical model and formulate its affecting parameters on its definition. In conclusion, the martensite percentages corresponding to the manufacturing parameters can be determined prior to a production using these controlling algorithms. Although the results acquired from both ANN and ANFIS are very encouraging, the proposed ANFIS has enhanced performance over the ANN and takes better effect on cost-reduction profit.

  10. An adaptive fuzzy prediction model for real time tumor tracking in radiotherapy via external surrogates.

    PubMed

    Esmaili Torshabi, Ahmad; Riboldi, Marco; Imani Fooladi, Abbas Ali; Modarres Mosalla, Seyed Mehdi; Baroni, Guido

    2013-01-01

    In the radiation treatment of moving targets with external surrogates, information on tumor position in real time can be extracted by using accurate correlation models. A fuzzy environment is proposed here to correlate input surrogate data with tumor motion estimates in real time. In this study, two different data clustering approaches were analyzed due to their substantial effects on the fuzzy modeler performance. Moreover, a comparative investigation was performed on two fuzzy-based and one neuro-fuzzy-based inference systems with respect to state-of-the-art models. Finally, due to the intrinsic interpatient variability in fuzzy models' performance, a model selectivity algorithm was proposed to select an adaptive fuzzy modeler on a case-by-case basis. The performance of multiple and adaptive fuzzy logic models were retrospectively tested in 20 patients treated with CyberKnife real-time tumor tracking. Final results show that activating adequate model selection of our fuzzy-based modeler can significantly reduce tumor tracking errors. PMID:23318386

  11. A geomorphology-based ANFIS model for multi-station modeling of rainfall-runoff process

    NASA Astrophysics Data System (ADS)

    Nourani, Vahid; Komasi, Mehdi

    2013-05-01

    This paper demonstrates the potential use of Artificial Intelligence (AI) techniques for predicting daily runoff at multiple gauging stations. Uncertainty and complexity of the rainfall-runoff process due to its variability in space and time in one hand and lack of historical data on the other hand, cause difficulties in the spatiotemporal modeling of the process. In this paper, an Integrated Geomorphological Adaptive Neuro-Fuzzy Inference System (IGANFIS) model conjugated with C-means clustering algorithm was used for rainfall-runoff modeling at multiple stations of the Eel River watershed, California. The proposed model could be used for predicting runoff in the stations with lack of data or any sub-basin within the watershed because of employing the spatial and temporal variables of the sub-basins as the model inputs. This ability of the integrated model for spatiotemporal modeling of the process was examined through the cross validation technique for a station. In this way, different ANFIS structures were trained using Sugeno algorithm in order to estimate daily discharge values at different stations. In order to improve the model efficiency, the input data were then classified into some clusters by the means of fuzzy C-means (FCMs) method. The goodness-of-fit measures support the gainful use of the IGANFIS and FCM methods in spatiotemporal modeling of hydrological processes.

  12. Performance of ANFIS versus MLP-NN dissolved oxygen prediction models in water quality monitoring.

    PubMed

    Najah, A; El-Shafie, A; Karim, O A; El-Shafie, Amr H

    2014-02-01

    We discuss the accuracy and performance of the adaptive neuro-fuzzy inference system (ANFIS) in training and prediction of dissolved oxygen (DO) concentrations. The model was used to analyze historical data generated through continuous monitoring of water quality parameters at several stations on the Johor River to predict DO concentrations. Four water quality parameters were selected for ANFIS modeling, including temperature, pH, nitrate (NO3) concentration, and ammoniacal nitrogen concentration (NH3-NL). Sensitivity analysis was performed to evaluate the effects of the input parameters. The inputs with the greatest effect were those related to oxygen content (NO3) or oxygen demand (NH3-NL). Temperature was the parameter with the least effect, whereas pH provided the lowest contribution to the proposed model. To evaluate the performance of the model, three statistical indices were used: the coefficient of determination (R (2)), the mean absolute prediction error, and the correlation coefficient. The performance of the ANFIS model was compared with an artificial neural network model. The ANFIS model was capable of providing greater accuracy, particularly in the case of extreme events. PMID:23949111

  13. Application of non-linear models to predict inhibition effects of various plant hydrosols on Listeria monocytogenes inoculated on fresh-cut apples.

    PubMed

    Ozturk, Ismet; Tornuk, Fatih; Sagdic, Osman; Kisi, Ozgur

    2012-07-01

    In this study, we studied the effects of some plant hydrosols obtained from bay leaf, black cumin, rosemary, sage, and thyme in reducing Listeria monocytogenes on the surface of fresh-cut apple cubes. Adaptive neuro-fuzzy inference system (ANFIS), artificial neural network (ANN), and multiple linear regression (MLR) models were used for describing the behavior of L. monocytogenes against the hydrosol treatments. Approximately 1-1.5 log CFU/g decreases in L. monocytogenes counts were observed after individual hydrosol treatments for 20 min. By extending the treatment time to 60 min, thyme, sage, or rosemary hydrosols eliminated L. monocytogenes, whereas black cumin and bay leaf hydrosols did not lead to additional reductions. In addition to antibacterial measurements, the abilities of ANFIS, ANN, and MLR models were compared with respect to estimation of the survival of L. monocytogenes. The root mean square error, mean absolute error, and determination coefficient statistics were used as comparison criteria. The comparison results indicated that the ANFIS model performed the best for estimating the effects of the plant hydrosols on L. monocytogenes counts. The ANN model was also effective; the MLR model was found to be poor at estimating L. monocytogenes numbers. PMID:22690764

  14. Ecohydrological modeling for large-scale environmental impact assessment.

    PubMed

    Woznicki, Sean A; Nejadhashemi, A Pouyan; Abouali, Mohammad; Herman, Matthew R; Esfahanian, Elaheh; Hamaamin, Yaseen A; Zhang, Zhen

    2016-02-01

    Ecohydrological models are frequently used to assess the biological integrity of unsampled streams. These models vary in complexity and scale, and their utility depends on their final application. Tradeoffs are usually made in model scale, where large-scale models are useful for determining broad impacts of human activities on biological conditions, and regional-scale (e.g. watershed or ecoregion) models provide stakeholders greater detail at the individual stream reach level. Given these tradeoffs, the objective of this study was to develop large-scale stream health models with reach level accuracy similar to regional-scale models thereby allowing for impacts assessments and improved decision-making capabilities. To accomplish this, four measures of biological integrity (Ephemeroptera, Plecoptera, and Trichoptera taxa (EPT), Family Index of Biotic Integrity (FIBI), Hilsenhoff Biotic Index (HBI), and fish Index of Biotic Integrity (IBI)) were modeled based on four thermal classes (cold, cold-transitional, cool, and warm) of streams that broadly dictate the distribution of aquatic biota in Michigan. The Soil and Water Assessment Tool (SWAT) was used to simulate streamflow and water quality in seven watersheds and the Hydrologic Index Tool was used to calculate 171 ecologically relevant flow regime variables. Unique variables were selected for each thermal class using a Bayesian variable selection method. The variables were then used in development of adaptive neuro-fuzzy inference systems (ANFIS) models of EPT, FIBI, HBI, and IBI. ANFIS model accuracy improved when accounting for stream thermal class rather than developing a global model. PMID:26595397

  15. A multivariate conditional model for streamflow prediction and spatial precipitation refinement

    NASA Astrophysics Data System (ADS)

    Liu, Zhiyong; Zhou, Ping; Chen, Xiuzhi; Guan, Yinghui

    2015-10-01

    The effective prediction and estimation of hydrometeorological variables are important for water resources planning and management. In this study, we propose a multivariate conditional model for streamflow prediction and the refinement of spatial precipitation estimates. This model consists of high dimensional vine copulas, conditional bivariate copula simulations, and a quantile-copula function. The vine copula is employed because of its flexibility in modeling the high dimensional joint distribution of multivariate data by building a hierarchy of conditional bivariate copulas. We investigate two cases to evaluate the performance and applicability of the proposed approach. In the first case, we generate one month ahead streamflow forecasts that incorporate multiple predictors including antecedent precipitation and streamflow records in a basin located in South China. The prediction accuracy of the vine-based model is compared with that of traditional data-driven models such as the support vector regression (SVR) and the adaptive neuro-fuzzy inference system (ANFIS). The results indicate that the proposed model produces more skillful forecasts than SVR and ANFIS. Moreover, this probabilistic model yields additional information concerning the predictive uncertainty. The second case involves refining spatial precipitation estimates derived from the tropical rainfall measuring mission precipitationproduct for the Yangtze River basin by incorporating remotely sensed soil moisture data and the observed precipitation from meteorological gauges over the basin. The validation results indicate that the proposed model successfully refines the spatial precipitation estimates. Although this model is tested for specific cases, it can be extended to other hydrometeorological variables for predictions and spatial estimations.

  16. Hourly runoff forecasting for flood risk management: Application of various computational intelligence models

    NASA Astrophysics Data System (ADS)

    Badrzadeh, Honey; Sarukkalige, Ranjan; Jayawardena, A. W.

    2015-10-01

    Reliable river flow forecasts play a key role in flood risk mitigation. Among different approaches of river flow forecasting, data driven approaches have become increasingly popular in recent years due to their minimum information requirements and ability to simulate nonlinear and non-stationary characteristics of hydrological processes. In this study, attempts are made to apply four different types of data driven approaches, namely traditional artificial neural networks (ANN), adaptive neuro-fuzzy inference systems (ANFIS), wavelet neural networks (WNN), and, hybrid ANFIS with multi resolution analysis using wavelets (WNF). Developed models applied for real time flood forecasting at Casino station on Richmond River, Australia which is highly prone to flooding. Hourly rainfall and runoff data were used to drive the models which have been used for forecasting with 1, 6, 12, 24, 36 and 48 h lead-time. The performance of models further improved by adding an upstream river flow data (Wiangaree station), as another effective input. All models perform satisfactorily up to 12 h lead-time. However, the hybrid wavelet-based models significantly outperforming the ANFIS and ANN models in the longer lead-time forecasting. The results confirm the robustness of the proposed structure of the hybrid models for real time runoff forecasting in the study area.

  17. A Bayesian Framework That Integrates Heterogeneous Data for Inferring Gene Regulatory Networks

    PubMed Central

    Santra, Tapesh

    2014-01-01

    Reconstruction of gene regulatory networks (GRNs) from experimental data is a fundamental challenge in systems biology. A number of computational approaches have been developed to infer GRNs from mRNA expression profiles. However, expression profiles alone are proving to be insufficient for inferring GRN topologies with reasonable accuracy. Recently, it has been shown that integration of external data sources (such as gene and protein sequence information, gene ontology data, protein–protein interactions) with mRNA expression profiles may increase the reliability of the inference process. Here, I propose a new approach that incorporates transcription factor binding sites (TFBS) and physical protein interactions (PPI) among transcription factors (TFs) in a Bayesian variable selection (BVS) algorithm which can infer GRNs from mRNA expression profiles subjected to genetic perturbations. Using real experimental data, I show that the integration of TFBS and PPI data with mRNA expression profiles leads to significantly more accurate networks than those inferred from expression profiles alone. Additionally, the performance of the proposed algorithm is compared with a series of least absolute shrinkage and selection operator (LASSO) regression-based network inference methods that can also incorporate prior knowledge in the inference framework. The results of this comparison suggest that BVS can outperform LASSO regression-based method in some circumstances. PMID:25152886

  18. A Metamodel of Central Inferences in Empirical Research

    ERIC Educational Resources Information Center

    Lund, Thorleif

    2005-01-01

    The purpose of the present paper is to emphasise the importance of inferences in an empirical study and to demonstrate how the inferences depend on a wider context. For that purpose a metamodel of central inferences is proposed, where each inference is characterised according to three dimensions: relevance, legitimacy, and validity. The relevance…

  19. Inference of Isoforms from Short Sequence Reads

    NASA Astrophysics Data System (ADS)

    Feng, Jianxing; Li, Wei; Jiang, Tao

    Due to alternative splicing events in eukaryotic species, the identification of mRNA isoforms (or splicing variants) is a difficult problem. Traditional experimental methods for this purpose are time consuming and cost ineffective. The emerging RNA-Seq technology provides a possible effective method to address this problem. Although the advantages of RNA-Seq over traditional methods in transcriptome analysis have been confirmed by many studies, the inference of isoforms from millions of short sequence reads (e.g., Illumina/Solexa reads) has remained computationally challenging. In this work, we propose a method to calculate the expression levels of isoforms and infer isoforms from short RNA-Seq reads using exon-intron boundary, transcription start site (TSS) and poly-A site (PAS) information. We first formulate the relationship among exons, isoforms, and single-end reads as a convex quadratic program, and then use an efficient algorithm (called IsoInfer) to search for isoforms. IsoInfer can calculate the expression levels of isoforms accurately if all the isoforms are known and infer novel isoforms from scratch. Our experimental tests on known mouse isoforms with both simulated expression levels and reads demonstrate that IsoInfer is able to calculate the expression levels of isoforms with an accuracy comparable to the state-of-the-art statistical method and a 60 times faster speed. Moreover, our tests on both simulated and real reads show that it achieves a good precision and sensitivity in inferring isoforms when given accurate exon-intron boundary, TSS and PAS information, especially for isoforms whose expression levels are significantly high.

  20. Intelligent machines in the twenty-first century: foundations of inference and inquiry

    NASA Technical Reports Server (NTRS)

    Knuth, Kevin H.

    2003-01-01

    The last century saw the application of Boolean algebra to the construction of computing machines, which work by applying logical transformations to information contained in their memory. The development of information theory and the generalization of Boolean algebra to Bayesian inference have enabled these computing machines, in the last quarter of the twentieth century, to be endowed with the ability to learn by making inferences from data. This revolution is just beginning as new computational techniques continue to make difficult problems more accessible. Recent advances in our understanding of the foundations of probability theory have revealed implications for areas other than logic. Of relevance to intelligent machines, we recently identified the algebra of questions as the free distributive algebra, which will now allow us to work with questions in a way analogous to that which Boolean algebra enables us to work with logical statements. In this paper, we examine the foundations of inference and inquiry. We begin with a history of inferential reasoning, highlighting key concepts that have led to the automation of inference in modern machine-learning systems. We then discuss the foundations of inference in more detail using a modern viewpoint that relies on the mathematics of partially ordered sets and the scaffolding of lattice theory. This new viewpoint allows us to develop the logic of inquiry and introduce a measure describing the relevance of a proposed question to an unresolved issue. Last, we will demonstrate the automation of inference, and discuss how this new logic of inquiry will enable intelligent machines to ask questions. Automation of both inference and inquiry promises to allow robots to perform science in the far reaches of our solar system and in other star systems by enabling them not only to make inferences from data, but also to decide which question to ask, which experiment to perform, or which measurement to take given what they have learned and what they are designed to understand.

  1. Object Perception as Bayesian Inference 1 Object Perception as Bayesian Inference

    E-print Network

    Yuille, Alan L.

    KEYWORDS: shape, material, depth, perception, vision, neural, psychophysics, fMRI, com- puter visionObject Perception as Bayesian Inference 1 Object Perception as Bayesian Inference Daniel Kersten and surfaces. Recent work in Bayesian theories of visual perception has shown how complexity may be managed

  2. Vision as Bayesian Inference:Vision as Bayesian Inference: Analysis by Synthesis.Analysis by Synthesis.

    E-print Network

    Haykin, Simon

    Vision as Bayesian Inference:Vision as Bayesian Inference: Analysis by Synthesis. ·· Videos/Videos/PDFPDF''ss available for download.available for download. #12;Difficulty of VisionDifficulty of Vision ·· Vision is extremely difficult.Vision is extremely difficult. ·· 50% cortex involved in vision

  3. The Observation/Inference Chart: Improving Students' Abilities to Make Inferences while Reading Nontraditional Texts

    ERIC Educational Resources Information Center

    Nokes, Jeffery D.

    2008-01-01

    The Observation/Inference (OI) Chart is a strategy that can help students learn to make observations and inferences when reading nontraditional texts such as artifacts, paintings or movies. Nontraditional texts can be highly engaging and provide authentic thinking experiences for students, but they can also be difficult to comprehend. Teachers can…

  4. Signal inference with unknown response: calibration-uncertainty renormalized estimator.

    PubMed

    Dorn, Sebastian; Enßlin, Torsten A; Greiner, Maksim; Selig, Marco; Boehm, Vanessa

    2015-01-01

    The calibration of a measurement device is crucial for every scientific experiment, where a signal has to be inferred from data. We present CURE, the calibration-uncertainty renormalized estimator, to reconstruct a signal and simultaneously the instrument's calibration from the same data without knowing the exact calibration, but its covariance structure. The idea of the CURE method, developed in the framework of information field theory, is to start with an assumed calibration to successively include more and more portions of calibration uncertainty into the signal inference equations and to absorb the resulting corrections into renormalized signal (and calibration) solutions. Thereby, the signal inference and calibration problem turns into a problem of solving a single system of ordinary differential equations and can be identified with common resummation techniques used in field theories. We verify the CURE method by applying it to a simplistic toy example and compare it against existent self-calibration schemes, Wiener filter solutions, and Markov chain Monte Carlo sampling. We conclude that the method is able to keep up in accuracy with the best self-calibration methods and serves as a noniterative alternative to them. PMID:25679743

  5. Estimating uncertainty of inference for validation

    SciTech Connect

    Booker, Jane M; Langenbrunner, James R; Hemez, Francois M; Ross, Timothy J

    2010-09-30

    We present a validation process based upon the concept that validation is an inference-making activity. This has always been true, but the association has not been as important before as it is now. Previously, theory had been confirmed by more data, and predictions were possible based on data. The process today is to infer from theory to code and from code to prediction, making the role of prediction somewhat automatic, and a machine function. Validation is defined as determining the degree to which a model and code is an accurate representation of experimental test data. Imbedded in validation is the intention to use the computer code to predict. To predict is to accept the conclusion that an observable final state will manifest; therefore, prediction is an inference whose goodness relies on the validity of the code. Quantifying the uncertainty of a prediction amounts to quantifying the uncertainty of validation, and this involves the characterization of uncertainties inherent in theory/models/codes and the corresponding data. An introduction to inference making and its associated uncertainty is provided as a foundation for the validation problem. A mathematical construction for estimating the uncertainty in the validation inference is then presented, including a possibility distribution constructed to represent the inference uncertainty for validation under uncertainty. The estimation of inference uncertainty for validation is illustrated using data and calculations from Inertial Confinement Fusion (ICF). The ICF measurements of neutron yield and ion temperature were obtained for direct-drive inertial fusion capsules at the Omega laser facility. The glass capsules, containing the fusion gas, were systematically selected with the intent of establishing a reproducible baseline of high-yield 10{sup 13}-10{sup 14} neutron output. The deuterium-tritium ratio in these experiments was varied to study its influence upon yield. This paper on validation inference is the first in a series of inference uncertainty estimations. While the methods demonstrated are primarily statistical, these do not preclude the use of nonprobabilistic methods for uncertainty characterization. The methods presented permit accurate determinations for validation and eventual prediction. It is a goal that these methods establish a standard against which best practice may evolve for determining degree of validation.

  6. Computationally efficient Bayesian inference for inverse problems.

    SciTech Connect

    Marzouk, Youssef M.; Najm, Habib N.; Rahn, Larry A.

    2007-10-01

    Bayesian statistics provides a foundation for inference from noisy and incomplete data, a natural mechanism for regularization in the form of prior information, and a quantitative assessment of uncertainty in the inferred results. Inverse problems - representing indirect estimation of model parameters, inputs, or structural components - can be fruitfully cast in this framework. Complex and computationally intensive forward models arising in physical applications, however, can render a Bayesian approach prohibitive. This difficulty is compounded by high-dimensional model spaces, as when the unknown is a spatiotemporal field. We present new algorithmic developments for Bayesian inference in this context, showing strong connections with the forward propagation of uncertainty. In particular, we introduce a stochastic spectral formulation that dramatically accelerates the Bayesian solution of inverse problems via rapid evaluation of a surrogate posterior. We also explore dimensionality reduction for the inference of spatiotemporal fields, using truncated spectral representations of Gaussian process priors. These new approaches are demonstrated on scalar transport problems arising in contaminant source inversion and in the inference of inhomogeneous material or transport properties. We also present a Bayesian framework for parameter estimation in stochastic models, where intrinsic stochasticity may be intermingled with observational noise. Evaluation of a likelihood function may not be analytically tractable in these cases, and thus several alternative Markov chain Monte Carlo (MCMC) schemes, operating on the product space of the observations and the parameters, are introduced.

  7. Maximum likelihood inference of reticulate evolutionary histories

    PubMed Central

    Yu, Yun; Dong, Jianrong; Liu, Kevin J.; Nakhleh, Luay

    2014-01-01

    Hybridization plays an important role in the evolution of certain groups of organisms, adaptation to their environments, and diversification of their genomes. The evolutionary histories of such groups are reticulate, and methods for reconstructing them are still in their infancy and have limited applicability. We present a maximum likelihood method for inferring reticulate evolutionary histories while accounting simultaneously for incomplete lineage sorting. Additionally, we propose methods for assessing confidence in the amount of reticulation and the topology of the inferred evolutionary history. Our method obtains accurate estimates of reticulate evolutionary histories on simulated datasets. Furthermore, our method provides support for a hypothesis of a reticulate evolutionary history inferred from a set of house mouse (Mus musculus) genomes. As evidence of hybridization in eukaryotic groups accumulates, it is essential to have methods that infer reticulate evolutionary histories. The work we present here allows for such inference and provides a significant step toward putting phylogenetic networks on par with phylogenetic trees as a model of capturing evolutionary relationships. PMID:25368173

  8. Inferring learners' knowledge from their actions.

    PubMed

    Rafferty, Anna N; LaMar, Michelle M; Griffiths, Thomas L

    2015-04-01

    Watching another person take actions to complete a goal and making inferences about that person's knowledge is a relatively natural task for people. This ability can be especially important in educational settings, where the inferences can be used for assessment, diagnosing misconceptions, and providing informative feedback. In this paper, we develop a general framework for automatically making such inferences based on observed actions; this framework is particularly relevant for inferring student knowledge in educational games and other interactive virtual environments. Our approach relies on modeling action planning: We formalize the problem as a Markov decision process in which one must choose what actions to take to complete a goal, where choices will be dependent on one's beliefs about how actions affect the environment. We use a variation of inverse reinforcement learning to infer these beliefs. Through two lab experiments, we show that this model can recover people's beliefs in a simple environment, with accuracy comparable to that of human observers. We then demonstrate that the model can be used to provide real-time feedback and to model data from an existing educational game. PMID:25155381

  9. Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models

    PubMed Central

    Stein, Richard R.; Marks, Debora S.; Sander, Chris

    2015-01-01

    Maximum entropy-based inference methods have been successfully used to infer direct interactions from biological datasets such as gene expression data or sequence ensembles. Here, we review undirected pairwise maximum-entropy probability models in two categories of data types, those with continuous and categorical random variables. As a concrete example, we present recently developed inference methods from the field of protein contact prediction and show that a basic set of assumptions leads to similar solution strategies for inferring the model parameters in both variable types. These parameters reflect interactive couplings between observables, which can be used to predict global properties of the biological system. Such methods are applicable to the important problems of protein 3-D structure prediction and association of gene–gene networks, and they enable potential applications to the analysis of gene alteration patterns and to protein design. PMID:26225866

  10. Automatic transformations in the inference process

    SciTech Connect

    Veroff, R. L.

    1980-07-01

    A technique for incorporating automatic transformations into processes such as the application of inference rules, subsumption, and demodulation provides a mechanism for improving search strategies for theorem proving problems arising from the field of program verification. The incorporation of automatic transformations into the inference process can alter the search space for a given problem, and is particularly useful for problems having broad rather than deep proofs. The technique can also be used to permit the generation of inferences that might otherwise be blocked and to build some commutativity or associativity into the unification process. Appropriate choice of transformations, and new literal clashing and unification algorithms for applying them, showed significant improvement on several real problems according to several distinct criteria. 22 references, 1 figure.

  11. Inferring modules from human protein interactome classes

    PubMed Central

    2010-01-01

    Background The integration of protein-protein interaction networks derived from high-throughput screening approaches and complementary sources is a key topic in systems biology. Although integration of protein interaction data is conventionally performed, the effects of this procedure on the result of network analyses has not been examined yet. In particular, in order to optimize the fusion of heterogeneous interaction datasets, it is crucial to consider not only their degree of coverage and accuracy, but also their mutual dependencies and additional salient features. Results We examined this issue based on the analysis of modules detected by network clustering methods applied to both integrated and individual (disaggregated) data sources, which we call interactome classes. Due to class diversity, we deal with variable dependencies of data features arising from structural specificities and biases, but also from possible overlaps. Since highly connected regions of the human interactome may point to potential protein complexes, we have focused on the concept of modularity, and elucidated the detection power of module extraction algorithms by independent validations based on GO, MIPS and KEGG. From the combination of protein interactions with gene expressions, a confidence scoring scheme has been proposed before proceeding via GO with further classification in permanent and transient modules. Conclusions Disaggregated interactomes are shown to be informative for inferring modularity, thus contributing to perform an effective integrative analysis. Validation of the extracted modules by multiple annotation allows for the assessment of confidence measures assigned to the modules in a protein pathway context. Notably, the proposed multilayer confidence scheme can be used for network calibration by enabling a transition from unweighted to weighted interactomes based on biological evidence. PMID:20653930

  12. "Transitive inference" in multiple conditional discriminations.

    PubMed Central

    Higa, J J; Staddon, J E

    1993-01-01

    We used multiple conditional discriminations to study the inferential abilities of pigeons. Using a five-term stimulus series, pigeons were trained to respond differentially to four overlapping pairs of concurrently presented stimuli: A+ B-, B+ C-, C+ D-, and D+ E-, where plus and minus indicate the stimulus associated with reinforcement and extinction, respectively. Transitive inference in such situations has been defined as a preference for Stimulus B over Stimulus D in a transfer test. We measured this and other untrained preferences (A vs. C, A vs. D, B vs. E, etc.) during nonreinforced test trials. In three experiments using a novel, rapid training procedure (termed autorun), we attempted to identify the necessary and sufficient conditions for transitive inference. We used two versions of autorun: response-based, in which the subject was repeatedly presented with the least well-discriminated stimulus pair; and time-based, in which the subject was repeatedly presented with the least-experienced stimulus pair. In Experiment 1, using response-based autorun, we showed that subjects learned the four stimulus pairs faster than, but at a level comparable to, a previous study on transitive inference in pigeons (Fersen, Wynne, Delius, & Staddon, 1991), but our animals failed to show transitive inference. Experiments 2 and 3 compared time- and response-based autorun. Discrimination performance was maintained, but transitive inference was observed only on the second exposure to the response-based procedure. These results show that inferential behavior in pigeons is not a reliable concomitant of good performance on a series of overlapping discriminations. The necessary and sufficient conditions for transitive inference in pigeons remain to be fully defined. PMID:8454956

  13. Dynamical inference: Where phase synchronization and generalized synchronization meet

    NASA Astrophysics Data System (ADS)

    Stankovski, Tomislav; McClintock, Peter V. E.; Stefanovska, Aneta

    2014-06-01

    Synchronization is a widespread phenomenon that occurs among interacting oscillatory systems. It facilitates their temporal coordination and can lead to the emergence of spontaneous order. The detection of synchronization from the time series of such systems is of great importance for the understanding and prediction of their dynamics, and several methods for doing so have been introduced. However, the common case where the interacting systems have time-variable characteristic frequencies and coupling parameters, and may also be subject to continuous external perturbation and noise, still presents a major challenge. Here we apply recent developments in dynamical Bayesian inference to tackle these problems. In particular, we discuss how to detect phase slips and the existence of deterministic coupling from measured data, and we unify the concepts of phase synchronization and general synchronization. Starting from phase or state observables, we present methods for the detection of both phase and generalized synchronization. The consistency and equivalence of phase and generalized synchronization are further demonstrated, by the analysis of time series from analog electronic simulations of coupled nonautonomous van der Pol oscillators. We demonstrate that the detection methods work equally well on numerically simulated chaotic systems. In all the cases considered, we show that dynamical Bayesian inference can clearly identify noise-induced phase slips and distinguish coherence from intrinsic coupling-induced synchronization.

  14. Dynamical inference: where phase synchronization and generalized synchronization meet.

    PubMed

    Stankovski, Tomislav; McClintock, Peter V E; Stefanovska, Aneta

    2014-06-01

    Synchronization is a widespread phenomenon that occurs among interacting oscillatory systems. It facilitates their temporal coordination and can lead to the emergence of spontaneous order. The detection of synchronization from the time series of such systems is of great importance for the understanding and prediction of their dynamics, and several methods for doing so have been introduced. However, the common case where the interacting systems have time-variable characteristic frequencies and coupling parameters, and may also be subject to continuous external perturbation and noise, still presents a major challenge. Here we apply recent developments in dynamical Bayesian inference to tackle these problems. In particular, we discuss how to detect phase slips and the existence of deterministic coupling from measured data, and we unify the concepts of phase synchronization and general synchronization. Starting from phase or state observables, we present methods for the detection of both phase and generalized synchronization. The consistency and equivalence of phase and generalized synchronization are further demonstrated, by the analysis of time series from analog electronic simulations of coupled nonautonomous van der Pol oscillators. We demonstrate that the detection methods work equally well on numerically simulated chaotic systems. In all the cases considered, we show that dynamical Bayesian inference can clearly identify noise-induced phase slips and distinguish coherence from intrinsic coupling-induced synchronization. PMID:25019853

  15. Maximum Entropy and the Inference of Patterns in Nature

    NASA Astrophysics Data System (ADS)

    Harte, J.

    2012-12-01

    Constrained maximization of information entropy yields least biased probability distributions. In statistical physics, this powerful inference method yields classical thermodynamics under the constraints implied by conservation laws. Here we apply this method to ecology, starting with logically necessary constraints formed from ratios of ecological state variables, and derive realistic abundance distributions, species-area relationships, spatial aggregation patterns, body-size distributions, and metrics of network structure over a wide range of taxonomic groups, habitats and spatial scales. Extension of the theory to higher taxonomic levels and to systems undergoing rapid change will be discussed.

  16. Statistical Inference for Big Data Problems in Molecular Biophysics

    SciTech Connect

    Ramanathan, Arvind; Savol, Andrej; Burger, Virginia; Quinn, Shannon; Agarwal, Pratul K; Chennubhotla, Chakra

    2012-01-01

    We highlight the role of statistical inference techniques in providing biological insights from analyzing long time-scale molecular simulation data. Technologi- cal and algorithmic improvements in computation have brought molecular simu- lations to the forefront of techniques applied to investigating the basis of living systems. While these longer simulations, increasingly complex reaching petabyte scales presently, promise a detailed view into microscopic behavior, teasing out the important information has now become a true challenge on its own. Mining this data for important patterns is critical to automating therapeutic intervention discovery, improving protein design, and fundamentally understanding the mech- anistic basis of cellular homeostasis.

  17. Regulon inference without arbitrary thresholds: three levels of sensitivity

    SciTech Connect

    Dubchak, Pavel Novichkov, Elena Stavrovskaya, Dmitry Rodionov, Andrey Mironov, Inna; Rodionov, Dmitry; Mironov, Andrey; Dubchak, Inna; Novichkov, P.S.

    2010-11-15

    Reconstruction of transcriptional regulatory networks is one of the major challenges facing the bioinformatics community in view of constantly growing number of complete genomes. The comparative genomics approach has been successfully used for the analysis of the transcriptional regulation of many metabolic systems in various bacteria taxa. The key step in this approach is given a position weight matrix, find an optimal threshold for the search of potential binding sites in genomes. In our previous work we proposed an approach for automatic selection of TFBS score threshold coupled with inference of regulon content. In this study we developed two modifications of this approach providing two additional levels of sensitivity.

  18. Comparative study of non-invasive force and stress inference methods in tissue

    E-print Network

    S. Ishihara; K. Sugimura; S. J. Cox; I. Bonnet; Y. Bellaiche; F. Graner

    2013-01-18

    In the course of animal development, the shape of tissue emerges in part from mechanical and biochemical interactions between cells. Measuring stress in tissue is essential for studying morphogenesis and its physical constraints. Experimental measurements of stress reported thus far have been invasive, indirect, or local. One theoretical approach is force inference from cell shapes and connectivity, which is non-invasive, can provide a space-time map of stress and relies on prefactors. Here, to validate force- inference methods, we performed a comparative study of them. Three force-inference methods, which differ in their approach of treating indefiniteness in an inverse problem between cell shapes and forces, were tested by using two artificial and two experimental data sets. Our results using different datasets consistently indicate that our Bayesian force inference, by which cell-junction tensions and cell pressures are simultaneously estimated, performs best in terms of accuracy and robustness. Moreover, by measuring the stress anisotropy and relaxation, we cross-validated the force inference and the global annular ablation of tissue, each of which relies on different prefactors. A practical choice of force-inference methods in distinct systems of interest is discussed.

  19. Phylogeny and the inference of evolutionary trajectories

    PubMed Central

    Hancock, Lillian; Edwards, Erika J.

    2014-01-01

    Most important organismal adaptations are not actually single traits, but complex trait syndromes that are evolutionarily integrated into a single emergent phenotype. Two alternative photosynthetic pathways, C4 photosynthesis and crassulacean acid metabolism (CAM), are primary plant adaptations of this sort, each requiring multiple biochemical and anatomical modifications. Phylogenetic methods are a promising approach for teasing apart the order of character acquisition during the evolution of complex traits, and the phylogenetic placement of intermediate phenotypes as sister taxa to fully optimized syndromes has been taken as good evidence of an ‘ordered’ evolutionary trajectory. But how much power does the phylogenetic approach have to detect ordered evolution? This study simulated ordered and unordered character evolution across a diverse set of phylogenetic trees to understand how tree size, models of evolution, and sampling efforts influence the ability to detect an evolutionary trajectory. The simulations show that small trees (15 taxa) do not contain enough information to correctly infer either an ordered or unordered trajectory, although inference improves as tree size and sampling increases. However, even when working with a 1000-taxon tree, the possibility of inferring the incorrect evolutionary model (type I/type II error) remains. Caution is needed when interpreting the phylogenetic placement of intermediate phenotypes, especially in small lineages. Such phylogenetic patterns can provide a line of evidence for the existence of a particular evolutionary trajectory, but they should be coupled with other types of data to infer the stepwise evolution of a complex character trait. PMID:24755279

  20. Pediatric Pain, Predictive Inference, and Sensitivity Analysis.

    ERIC Educational Resources Information Center

    Weiss, Robert

    1994-01-01

    Coping style and effects of counseling intervention on pain tolerance was studied for 61 elementary school students through immersion of hands in cold water. Bayesian predictive inference tools are able to distinguish between subject characteristics and manipulable treatments. Sensitivity analysis strengthens the certainty of conclusions about…