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Sample records for nonlinear poisson-boltzmann equation

  1. Solution of the nonlinear Poisson-Boltzmann equation: Application to ionic diffusion in cementitious materials

    SciTech Connect

    Arnold, J.; Kosson, D.S.; Garrabrants, A.; Meeussen, J.C.L.; Sloot, H.A. van der

    2013-02-15

    A robust numerical solution of the nonlinear Poisson-Boltzmann equation for asymmetric polyelectrolyte solutions in discrete pore geometries is presented. Comparisons to the linearized approximation of the Poisson-Boltzmann equation reveal that the assumptions leading to linearization may not be appropriate for the electrochemical regime in many cementitious materials. Implications of the electric double layer on both partitioning of species and on diffusive release are discussed. The influence of the electric double layer on anion diffusion relative to cation diffusion is examined.

  2. Multigrid solution of the nonlinear Poisson-Boltzmann equation and calculation of titration curves.

    PubMed Central

    Oberoi, H; Allewell, N M

    1993-01-01

    Although knowledge of the pKa values and charge states of individual residues is critical to understanding the role of electrostatic effects in protein structure and function, calculating these quantities is challenging because of the sensitivity of these parameters to the position and distribution of charges. Values for many different proteins which agree well with experimental results have been obtained with modified Tanford-Kirkwood theory in which the protein is modeled as a sphere (reviewed in Ref. 1); however, convergence is more difficult to achieve with finite difference methods, in which the protein is mapped onto a grid and derivatives of the potential function are calculated as differences between the values of the function at grid points (reviewed in Ref. 6). Multigrid methods, in which the size of the grid is varied from fine to coarse in several cycles, decrease computational time, increase rates of convergence, and improve agreement with experiment. Both the accuracy and computational advantage of the multigrid approach increase with grid size, because the time required to achieve a solution increases slowly with grid size. We have implemented a multigrid procedure for solving the nonlinear Poisson-Boltzmann equation, and, using lysozyme as a test case, compared calculations for several crystal forms, different refinement procedures, and different charge assignment schemes. The root mean square difference between calculated and experimental pKa values for the crystal structure which yields best agreement with experiment (1LZT) is 1.1 pH units, with the differences in calculated and experimental pK values being less than 0.6 pH units for 16 out of 21 residues. The calculated titration curves of several residues are biphasic. Images FIGURE 8 PMID:8369451

  3. A Combined MPI-CUDA Parallel Solution of Linear and Nonlinear Poisson-Boltzmann Equation

    PubMed Central

    Colmenares, José; Galizia, Antonella; Ortiz, Jesús; Clematis, Andrea; Rocchia, Walter

    2014-01-01

    The Poisson-Boltzmann equation models the electrostatic potential generated by fixed charges on a polarizable solute immersed in an ionic solution. This approach is often used in computational structural biology to estimate the electrostatic energetic component of the assembly of molecular biological systems. In the last decades, the amount of data concerning proteins and other biological macromolecules has remarkably increased. To fruitfully exploit these data, a huge computational power is needed as well as software tools capable of exploiting it. It is therefore necessary to move towards high performance computing and to develop proper parallel implementations of already existing and of novel algorithms. Nowadays, workstations can provide an amazing computational power: up to 10 TFLOPS on a single machine equipped with multiple CPUs and accelerators such as Intel Xeon Phi or GPU devices. The actual obstacle to the full exploitation of modern heterogeneous resources is efficient parallel coding and porting of software on such architectures. In this paper, we propose the implementation of a full Poisson-Boltzmann solver based on a finite-difference scheme using different and combined parallel schemes and in particular a mixed MPI-CUDA implementation. Results show great speedups when using the two schemes, achieving an 18.9x speedup using three GPUs. PMID:25013789

  4. A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation.

    PubMed

    Colmenares, José; Galizia, Antonella; Ortiz, Jesús; Clematis, Andrea; Rocchia, Walter

    2014-01-01

    The Poisson-Boltzmann equation models the electrostatic potential generated by fixed charges on a polarizable solute immersed in an ionic solution. This approach is often used in computational structural biology to estimate the electrostatic energetic component of the assembly of molecular biological systems. In the last decades, the amount of data concerning proteins and other biological macromolecules has remarkably increased. To fruitfully exploit these data, a huge computational power is needed as well as software tools capable of exploiting it. It is therefore necessary to move towards high performance computing and to develop proper parallel implementations of already existing and of novel algorithms. Nowadays, workstations can provide an amazing computational power: up to 10 TFLOPS on a single machine equipped with multiple CPUs and accelerators such as Intel Xeon Phi or GPU devices. The actual obstacle to the full exploitation of modern heterogeneous resources is efficient parallel coding and porting of software on such architectures. In this paper, we propose the implementation of a full Poisson-Boltzmann solver based on a finite-difference scheme using different and combined parallel schemes and in particular a mixed MPI-CUDA implementation. Results show great speedups when using the two schemes, achieving an 18.9x speedup using three GPUs. PMID:25013789

  5. Solution of the nonlinear Poisson-Boltzmann equation using pseudo-transient continuation and the finite element method.

    PubMed

    Shestakov, A I; Milovich, J L; Noy, A

    2002-03-01

    The nonlinear Poisson-Boltzmann (PB) equation is solved using Newton-Krylov iterations coupled with pseudo-transient continuation. The PB potential is used to compute the electrostatic energy and evaluate the force on a user-specified contour. The PB solver is embedded in a existing, 3D, massively parallel, unstructured-grid, finite element code. Either Dirichlet or mixed boundary conditions are allowed. The latter specifies surface charges, approximates far-field conditions, or linearizes conditions "regulating" the surface charge. Stability and robustness are proved using results for backward Euler differencing of diffusion equations. Potentials and energies of charged spheres and plates are computed and results compared to analysis. An approximation to the potential of the nonlinear, spherical charge is derived by combining two analytic formulae. The potential and force due to a conical probe interacting with a flat plate are computed for two types of boundary conditions: constant potential and constant charge. The second case is compared with direct force measurements by chemical force microscopy. The problem is highly nonlinear-surface potentials of the linear and nonlinear PB equations differ by over an order of magnitude. Comparison of the simulated and experimentally measured forces shows that approximately half of the surface carboxylic acid groups, of density 1/(0.2 nm2), ionize in the electrolyte implying surface charges of 0.4 C/m2, surface potentials of 0.27 V, and a force of 0.6 nN when the probe and plate are 8.7 nm apart. PMID:16290441

  6. Performance of Nonlinear Finite-Difference Poisson-Boltzmann Solvers.

    PubMed

    Cai, Qin; Hsieh, Meng-Juei; Wang, Jun; Luo, Ray

    2010-01-12

    We implemented and optimized seven finite-difference solvers for the full nonlinear Poisson-Boltzmann equation in biomolecular applications, including four relaxation methods, one conjugate gradient method, and two inexact Newton methods. The performance of the seven solvers was extensively evaluated with a large number of nucleic acids and proteins. Worth noting is the inexact Newton method in our analysis. We investigated the role of linear solvers in its performance by incorporating the incomplete Cholesky conjugate gradient and the geometric multigrid into its inner linear loop. We tailored and optimized both linear solvers for faster convergence rate. In addition, we explored strategies to optimize the successive over-relaxation method to reduce its convergence failures without too much sacrifice in its convergence rate. Specifically we attempted to adaptively change the relaxation parameter and to utilize the damping strategy from the inexact Newton method to improve the successive over-relaxation method. Our analysis shows that the nonlinear methods accompanied with a functional-assisted strategy, such as the conjugate gradient method and the inexact Newton method, can guarantee convergence in the tested molecules. Especially the inexact Newton method exhibits impressive performance when it is combined with highly efficient linear solvers that are tailored for its special requirement. PMID:24723843

  7. Multilevel Methods for the Poisson-Boltzmann Equation

    NASA Astrophysics Data System (ADS)

    Holst, Michael Jay

    We consider the numerical solution of the Poisson -Boltzmann equation (PBE), a three-dimensional second order nonlinear elliptic partial differential equation arising in biophysics. This problem has several interesting features impacting numerical algorithms, including discontinuous coefficients representing material interfaces, rapid nonlinearities, and three spatial dimensions. Similar equations occur in various applications, including nuclear physics, semiconductor physics, population genetics, astrophysics, and combustion. In this thesis, we study the PBE, discretizations, and develop multilevel-based methods for approximating the solutions of these types of equations. We first outline the physical model and derive the PBE, which describes the electrostatic potential of a large complex biomolecule lying in a solvent. We next study the theoretical properties of the linearized and nonlinear PBE using standard function space methods; since this equation has not been previously studied theoretically, we provide existence and uniqueness proofs in both the linearized and nonlinear cases. We also analyze box-method discretizations of the PBE, establishing several properties of the discrete equations which are produced. In particular, we show that the discrete nonlinear problem is well-posed. We study and develop linear multilevel methods for interface problems, based on algebraic enforcement of Galerkin or variational conditions, and on coefficient averaging procedures. Using a stencil calculus, we show that in certain simplified cases the two approaches are equivalent, with different averaging procedures corresponding to different prolongation operators. We also develop methods for nonlinear problems based on a nonlinear multilevel method, and on linear multilevel methods combined with a globally convergent damped-inexact-Newton method. We derive a necessary and sufficient descent condition for the inexact-Newton direction, enabling the development of extremely

  8. Sensitivities to parameterization in the size-modified Poisson-Boltzmann equation

    NASA Astrophysics Data System (ADS)

    Harris, Robert C.; Boschitsch, Alexander H.; Fenley, Marcia O.

    2014-02-01

    Experimental results have demonstrated that the numbers of counterions surrounding nucleic acids differ from those predicted by the nonlinear Poisson-Boltzmann equation, NLPBE. Some studies have fit these data against the ion size in the size-modified Poisson-Boltzmann equation, SMPBE, but the present study demonstrates that other parameters, such as the Stern layer thickness and the molecular surface definition, can change the number of bound ions by amounts comparable to varying the ion size. These parameters will therefore have to be fit simultaneously against experimental data. In addition, the data presented here demonstrate that the derivative, SK, of the electrostatic binding free energy, ΔGel, with respect to the logarithm of the salt concentration is sensitive to these parameters, and experimental measurements of SK could be used to parameterize the model. However, although better values for the Stern layer thickness and ion size and better molecular surface definitions could improve the model's predictions of the numbers of ions around biomolecules and SK, ΔGel itself is more sensitive to parameters, such as the interior dielectric constant, which in turn do not significantly affect the distributions of ions around biomolecules. Therefore, improved estimates of the ion size and Stern layer thickness to use in the SMPBE will not necessarily improve the model's predictions of ΔGel.

  9. Sensitivities to parameterization in the size-modified Poisson-Boltzmann equation.

    PubMed

    Harris, Robert C; Boschitsch, Alexander H; Fenley, Marcia O

    2014-02-21

    Experimental results have demonstrated that the numbers of counterions surrounding nucleic acids differ from those predicted by the nonlinear Poisson-Boltzmann equation, NLPBE. Some studies have fit these data against the ion size in the size-modified Poisson-Boltzmann equation, SMPBE, but the present study demonstrates that other parameters, such as the Stern layer thickness and the molecular surface definition, can change the number of bound ions by amounts comparable to varying the ion size. These parameters will therefore have to be fit simultaneously against experimental data. In addition, the data presented here demonstrate that the derivative, SK, of the electrostatic binding free energy, ΔGel, with respect to the logarithm of the salt concentration is sensitive to these parameters, and experimental measurements of SK could be used to parameterize the model. However, although better values for the Stern layer thickness and ion size and better molecular surface definitions could improve the model's predictions of the numbers of ions around biomolecules and SK, ΔGel itself is more sensitive to parameters, such as the interior dielectric constant, which in turn do not significantly affect the distributions of ions around biomolecules. Therefore, improved estimates of the ion size and Stern layer thickness to use in the SMPBE will not necessarily improve the model's predictions of ΔGel. PMID:24559370

  10. Incorporation of solvation effects into the fragment molecular orbital calculations with the Poisson-Boltzmann equation

    NASA Astrophysics Data System (ADS)

    Watanabe, Hirofumi; Okiyama, Yoshio; Nakano, Tatsuya; Tanaka, Shigenori

    2010-11-01

    We developed FMO-PB method, which incorporates solvation effects into the Fragment Molecular Orbital calculation with the Poisson-Boltzmann equation. This method retains good accuracy in energy calculations with reduced computational time. We calculated the solvation free energies for polyalanines, Alpha-1 peptide, tryptophan cage, and complex of estrogen receptor and 17 β-estradiol to show the applicability of this method for practical systems. From the calculated results, it has been confirmed that the FMO-PB method is useful for large biomolecules in solution. We also discussed the electric charges which are used in solving the Poisson-Boltzmann equation.

  11. A new Green's function Monte Carlo algorithm for the solution of the two-dimensional nonlinear Poisson-Boltzmann equation: Application to the modeling of the communication breakdown problem in space vehicles during re-entry

    NASA Astrophysics Data System (ADS)

    Chatterjee, Kausik; Roadcap, John R.; Singh, Surendra

    2014-11-01

    The objective of this paper is the exposition of a recently-developed, novel Green's function Monte Carlo (GFMC) algorithm for the solution of nonlinear partial differential equations and its application to the modeling of the plasma sheath region around a cylindrical conducting object, carrying a potential and moving at low speeds through an otherwise neutral medium. The plasma sheath is modeled in equilibrium through the GFMC solution of the nonlinear Poisson-Boltzmann (NPB) equation. The traditional Monte Carlo based approaches for the solution of nonlinear equations are iterative in nature, involving branching stochastic processes which are used to calculate linear functionals of the solution of nonlinear integral equations. Over the last several years, one of the authors of this paper, K. Chatterjee has been developing a philosophically-different approach, where the linearization of the equation of interest is not required and hence there is no need for iteration and the simulation of branching processes. Instead, an approximate expression for the Green's function is obtained using perturbation theory, which is used to formulate the random walk equations within the problem sub-domains where the random walker makes its walks. However, as a trade-off, the dimensions of these sub-domains have to be restricted by the limitations imposed by perturbation theory. The greatest advantage of this approach is the ease and simplicity of parallelization stemming from the lack of the need for iteration, as a result of which the parallelization procedure is identical to the parallelization procedure for the GFMC solution of a linear problem. The application area of interest is in the modeling of the communication breakdown problem during a space vehicle's re-entry into the atmosphere. However, additional application areas are being explored in the modeling of electromagnetic propagation through the atmosphere/ionosphere in UHF/GPS applications.

  12. AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation.

    PubMed

    Koehl, Patrice; Delarue, Marc

    2010-02-14

    The Poisson-Boltzmann (PB) formalism is among the most popular approaches to modeling the solvation of molecules. It assumes a continuum model for water, leading to a dielectric permittivity that only depends on position in space. In contrast, the dipolar Poisson-Boltzmann-Langevin (DPBL) formalism represents the solvent as a collection of orientable dipoles with nonuniform concentration; this leads to a nonlinear permittivity function that depends both on the position and on the local electric field at that position. The differences in the assumptions underlying these two models lead to significant differences in the equations they generate. The PB equation is a second order, elliptic, nonlinear partial differential equation (PDE). Its response coefficients correspond to the dielectric permittivity and are therefore constant within each subdomain of the system considered (i.e., inside and outside of the molecules considered). While the DPBL equation is also a second order, elliptic, nonlinear PDE, its response coefficients are nonlinear functions of the electrostatic potential. Many solvers have been developed for the PB equation; to our knowledge, none of these can be directly applied to the DPBL equation. The methods they use may adapt to the difference; their implementations however are PBE specific. We adapted the PBE solver originally developed by Holst and Saied [J. Comput. Chem. 16, 337 (1995)] to the problem of solving the DPBL equation. This solver uses a truncated Newton method with a multigrid preconditioner. Numerical evidences suggest that it converges for the DPBL equation and that the convergence is superlinear. It is found however to be slow and greedy in memory requirement for problems commonly encountered in computational biology and computational chemistry. To circumvent these problems, we propose two variants, a quasi-Newton solver based on a simplified, inexact Jacobian and an iterative self-consistent solver that is based directly on the PBE

  13. The charge conserving Poisson-Boltzmann equations: Existence, uniqueness, and maximum principle

    SciTech Connect

    Lee, Chiun-Chang

    2014-05-15

    The present article is concerned with the charge conserving Poisson-Boltzmann (CCPB) equation in high-dimensional bounded smooth domains. The CCPB equation is a Poisson-Boltzmann type of equation with nonlocal coefficients. First, under the Robin boundary condition, we get the existence of weak solutions to this equation. The main approach is variational, based on minimization of a logarithm-type energy functional. To deal with the regularity of weak solutions, we establish a maximum modulus estimate for the standard Poisson-Boltzmann (PB) equation to show that weak solutions of the CCPB equation are essentially bounded. Then the classical solutions follow from the elliptic regularity theorem. Second, a maximum principle for the CCPB equation is established. In particular, we show that in the case of global electroneutrality, the solution achieves both its maximum and minimum values at the boundary. However, in the case of global non-electroneutrality, the solution may attain its maximum value at an interior point. In addition, under certain conditions on the boundary, we show that the global non-electroneutrality implies pointwise non-electroneutrality.

  14. ADAPTIVE FINITE ELEMENT MODELING TECHNIQUES FOR THE POISSON-BOLTZMANN EQUATION

    PubMed Central

    HOLST, MICHAEL; MCCAMMON, JAMES ANDREW; YU, ZEYUN; ZHOU, YOUNGCHENG; ZHU, YUNRONG

    2011-01-01

    We consider the design of an effective and reliable adaptive finite element method (AFEM) for the nonlinear Poisson-Boltzmann equation (PBE). We first examine the two-term regularization technique for the continuous problem recently proposed by Chen, Holst, and Xu based on the removal of the singular electrostatic potential inside biomolecules; this technique made possible the development of the first complete solution and approximation theory for the Poisson-Boltzmann equation, the first provably convergent discretization, and also allowed for the development of a provably convergent AFEM. However, in practical implementation, this two-term regularization exhibits numerical instability. Therefore, we examine a variation of this regularization technique which can be shown to be less susceptible to such instability. We establish a priori estimates and other basic results for the continuous regularized problem, as well as for Galerkin finite element approximations. We show that the new approach produces regularized continuous and discrete problems with the same mathematical advantages of the original regularization. We then design an AFEM scheme for the new regularized problem, and show that the resulting AFEM scheme is accurate and reliable, by proving a contraction result for the error. This result, which is one of the first results of this type for nonlinear elliptic problems, is based on using continuous and discrete a priori L∞ estimates to establish quasi-orthogonality. To provide a high-quality geometric model as input to the AFEM algorithm, we also describe a class of feature-preserving adaptive mesh generation algorithms designed specifically for constructing meshes of biomolecular structures, based on the intrinsic local structure tensor of the molecular surface. All of the algorithms described in the article are implemented in the Finite Element Toolkit (FETK), developed and maintained at UCSD. The stability advantages of the new regularization scheme

  15. Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation

    PubMed Central

    Botello-Smith, Wesley M.; Luo, Ray

    2016-01-01

    Continuum solvent models have been widely used in biomolecular modeling applications. Recently much attention has been given to inclusion of implicit membrane into existing continuum Poisson-Boltzmann solvent models to extend their applications to membrane systems. Inclusion of an implicit membrane complicates numerical solutions of the underlining Poisson-Boltzmann equation due to the dielectric inhomogeneity on the boundary surfaces of a computation grid. This can be alleviated by the use of the periodic boundary condition, a common practice in electrostatic computations in particle simulations. The conjugate gradient and successive over-relaxation methods are relatively straightforward to be adapted to periodic calculations, but their convergence rates are quite low, limiting their applications to free energy simulations that require a large number of conformations to be processed. To accelerate convergence, the Incomplete Cholesky preconditioning and the geometric multi-grid methods have been extended to incorporate periodicity for biomolecular applications. Impressive convergence behaviors were found as in the previous applications of these numerical methods to tested biomolecules and MMPBSA calculations. PMID:26389966

  16. Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation.

    PubMed

    Botello-Smith, Wesley M; Luo, Ray

    2015-10-26

    Continuum solvent models have been widely used in biomolecular modeling applications. Recently much attention has been given to inclusion of implicit membranes into existing continuum Poisson-Boltzmann solvent models to extend their applications to membrane systems. Inclusion of an implicit membrane complicates numerical solutions of the underlining Poisson-Boltzmann equation due to the dielectric inhomogeneity on the boundary surfaces of a computation grid. This can be alleviated by the use of the periodic boundary condition, a common practice in electrostatic computations in particle simulations. The conjugate gradient and successive over-relaxation methods are relatively straightforward to be adapted to periodic calculations, but their convergence rates are quite low, limiting their applications to free energy simulations that require a large number of conformations to be processed. To accelerate convergence, the Incomplete Cholesky preconditioning and the geometric multigrid methods have been extended to incorporate periodicity for biomolecular applications. Impressive convergence behaviors were found as in the previous applications of these numerical methods to tested biomolecules and MMPBSA calculations. PMID:26389966

  17. Membrane potential and ion partitioning in an erythrocyte using the Poisson-Boltzmann equation.

    PubMed

    Barbosa, Nathalia S V; Lima, Eduardo R A; Boström, Mathias; Tavares, Frederico W

    2015-05-28

    In virtually all mammal cells, we can observe a much higher concentration of potassium ions inside the cell and vice versa for sodium ions. Classical theories ignore the specific ion effects and the difference in the thermodynamic reference states between intracellular and extracellular environments. Usually, this differential ion partitioning across a cell membrane is attributed exclusively to the active ion transport. Our aim is to investigate how much the dispersion forces contribute to active ion pumps in an erythrocyte (red blood cell) as well as the correction of chemical potential reference states between intracellular and extracellular environments. The ionic partition and the membrane potential in an erythrocyte are analyzed by the modified Poisson-Boltzmann equation, considering nonelectrostatic interactions between ions and macromolecules. Results show that the nonelectrostatic potential calculated by Lifshitz theory has only a small influence with respect to the high concentration of K(+) in the intracellular environment in comparison with Na(+). PMID:25941952

  18. Exact solution of the unidimensional Poisson-Boltzmann equation for a 1:2 (2:1) electrolyte.

    PubMed Central

    Andrietti, F; Peres, A; Pezzotta, R

    1976-01-01

    The unidimensional Poisson-Boltzmann equation for a 1:2 (2:1) electrolyte has been solved analytically. The results have been compared with those obtained from the linearized equation. It is shown that in physiological conditions the difference may be greater than 10%. The value of the derivative of the potential in x=0, (dpsi/dx)x=0, has been used by many authors in the evaluation of the superficial charges of biological membranes. The value of (dpsi/dx)x-0 have also been compared with the ones derived from the linearized equation. The difference may be greater than 25%. Our results suggest that the linearization of the Poisson-Boltzmann equation for a 1:2(2:1) electrolyte may be greatly misleading. PMID:963209

  19. Influence of Grid Spacing in Poisson-Boltzmann Equation Binding Energy Estimation.

    PubMed

    Harris, Robert C; Boschitsch, Alexander H; Fenley, Marcia O

    2013-08-13

    Grid-based solvers of the Poisson-Boltzmann, PB, equation are routinely used to estimate electrostatic binding, ΔΔGel, and solvation, ΔGel, free energies. The accuracies of such estimates are subject to grid discretization errors from the finite difference approximation to the PB equation. Here, we show that the grid discretization errors in ΔΔGel are more significant than those in ΔGel, and can be divided into two parts: (i) errors associated with the relative positioning of the grid and (ii) systematic errors associated with grid spacing. The systematic error in particular is significant for methods, such as the molecular mechanics PB surface area, MM-PBSA, approach that predict electrostatic binding free energies by averaging over an ensemble of molecular conformations. Although averaging over multiple conformations can control for the error associated with grid placement, it will not eliminate the systematic error, which can only be controlled by reducing grid spacing. The present study indicates that the widely-used grid spacing of 0.5 Å produces unacceptable errors in ΔΔGel, even though its predictions of ΔGel are adequate for the cases considered here. Although both grid discretization errors generally increase with grid spacing, the relative sizes of these errors differ according to the solute-solvent dielectric boundary definition. The grid discretization errors are generally smaller on the Gaussian surface used in the present study than on either the solvent-excluded or van der Waals surfaces, which both contain more surface discontinuities (e.g., sharp edges and cusps). Additionally, all three molecular surfaces converge to very different estimates of ΔΔGel. PMID:23997692

  20. Efficient quantum mechanical calculation of solvation free energies based on density functional theory, numerical atomic orbitals and Poisson Boltzmann equation

    NASA Astrophysics Data System (ADS)

    Wang, Mingliang; Wong, Chung F.; Liu, Jianhong; Zhang, Peixin

    2007-07-01

    We have successfully coupled the Kohn-Sham with Poisson-Boltzmann equations to predict the solvation free energy, where the Kohn-Sham equations were solved by implementing the flexible pseudo atomic orbitals as in S IESTA package. It was found that the calculated solvation free energy is in good agreement with experimental results for small neutral molecules, and its standard error is 1.33 kcal/mol, the correlation coefficient is 0.97. Due to its high efficiency and accuracy, the proposed model can be a promising tool for computing solvation free energies in computer aided drug design in future.

  1. Electrostatic forces in the Poisson-Boltzmann systems

    PubMed Central

    Xiao, Li; Cai, Qin; Ye, Xiang; Wang, Jun; Luo, Ray

    2013-01-01

    Continuum modeling of electrostatic interactions based upon numerical solutions of the Poisson-Boltzmann equation has been widely used in structural and functional analyses of biomolecules. A limitation of the numerical strategies is that it is conceptually difficult to incorporate these types of models into molecular mechanics simulations, mainly because of the issue in assigning atomic forces. In this theoretical study, we first derived the Maxwell stress tensor for molecular systems obeying the full nonlinear Poisson-Boltzmann equation. We further derived formulations of analytical electrostatic forces given the Maxwell stress tensor and discussed the relations of the formulations with those published in the literature. We showed that the formulations derived from the Maxwell stress tensor require a weaker condition for its validity, applicable to nonlinear Poisson-Boltzmann systems with a finite number of singularities such as atomic point charges and the existence of discontinuous dielectric as in the widely used classical piece-wise constant dielectric models. PMID:24028101

  2. Langevin Poisson-Boltzmann equation: point-like ions and water dipoles near a charged surface.

    PubMed

    Gongadze, Ekaterina; van Rienen, Ursula; Kralj-Iglič, Veronika; Iglič, Aleš

    2011-06-01

    Water ordering near a charged membrane surface is important for many biological processes such as binding of ligands to a membrane or transport of ions across it. In this work, the mean-field Poisson-Boltzmann theory for point-like ions, describing an electrolyte solution in contact with a planar charged surface, is modified by including the orientational ordering of water. Water molecules are considered as Langevin dipoles, while the number density of water is assumed to be constant everywhere in the electrolyte solution. It is shown that the dielectric permittivity of an electrolyte close to a charged surface is decreased due to the increased orientational ordering of water dipoles. The dielectric permittivity close to the charged surface is additionally decreased due to the finite size of ions and dipoles. PMID:21613667

  3. The Poisson-Boltzmann model for tRNA

    PubMed Central

    Gruziel, Magdalena; Grochowski, Pawel; Trylska, Joanna

    2008-01-01

    Using tRNA molecule as an example, we evaluate the applicability of the Poisson-Boltzmann model to highly charged systems such as nucleic acids. Particularly, we describe the effect of explicit crystallographic divalent ions and water molecules, ionic strength of the solvent, and the linear approximation to the Poisson-Boltzmann equation on the electrostatic potential and electrostatic free energy. We calculate and compare typical similarity indices and measures, such as Hodgkin index and root mean square deviation. Finally, we introduce a modification to the nonlinear Poisson-Boltzmann equation, which accounts in a simple way for the finite size of mobile ions, by applying a cutoff in the concentration formula for ionic distribution at regions of high electrostatic potentials. We test the influence of this ionic concentration cutoff on the electrostatic properties of tRNA. PMID:18432617

  4. Function-Space-Based Solution Scheme for the Size-Modified Poisson-Boltzmann Equation in Full-Potential DFT.

    PubMed

    Ringe, Stefan; Oberhofer, Harald; Hille, Christoph; Matera, Sebastian; Reuter, Karsten

    2016-08-01

    The size-modified Poisson-Boltzmann (MPB) equation is an efficient implicit solvation model which also captures electrolytic solvent effects. It combines an account of the dielectric solvent response with a mean-field description of solvated finite-sized ions. We present a general solution scheme for the MPB equation based on a fast function-space-oriented Newton method and a Green's function preconditioned iterative linear solver. In contrast to popular multigrid solvers, this approach allows us to fully exploit specialized integration grids and optimized integration schemes. We describe a corresponding numerically efficient implementation for the full-potential density-functional theory (DFT) code FHI-aims. We show that together with an additional Stern layer correction the DFT+MPB approach can describe the mean activity coefficient of a KCl aqueous solution over a wide range of concentrations. The high sensitivity of the calculated activity coefficient on the employed ionic parameters thereby suggests to use extensively tabulated experimental activity coefficients of salt solutions for a systematic parametrization protocol. PMID:27323006

  5. Polyelectrolyte Microcapsules: Ion Distributions from a Poisson-Boltzmann Model

    NASA Astrophysics Data System (ADS)

    Tang, Qiyun; Denton, Alan R.; Rozairo, Damith; Croll, Andrew B.

    2014-03-01

    Recent experiments have shown that polystyrene-polyacrylic-acid-polystyrene (PS-PAA-PS) triblock copolymers in a solvent mixture of water and toluene can self-assemble into spherical microcapsules. Suspended in water, the microcapsules have a toluene core surrounded by an elastomer triblock shell. The longer, hydrophilic PAA blocks remain near the outer surface of the shell, becoming charged through dissociation of OH functional groups in water, while the shorter, hydrophobic PS blocks form a networked (glass or gel) structure. Within a mean-field Poisson-Boltzmann theory, we model these polyelectrolyte microcapsules as spherical charged shells, assuming different dielectric constants inside and outside the capsule. By numerically solving the nonlinear Poisson-Boltzmann equation, we calculate the radial distribution of anions and cations and the osmotic pressure within the shell as a function of salt concentration. Our predictions, which can be tested by comparison with experiments, may guide the design of microcapsules for practical applications, such as drug delivery. This work was supported by the National Science Foundation under Grant No. DMR-1106331.

  6. Beyond Poisson-Boltzmann: fluctuations and fluid structure in a self-consistent theory.

    PubMed

    Buyukdagli, S; Blossey, R

    2016-09-01

    Poisson-Boltzmann (PB) theory is the classic approach to soft matter electrostatics and has been applied to numerous physical chemistry and biophysics problems. Its essential limitations are in its neglect of correlation effects and fluid structure. Recently, several theoretical insights have allowed the formulation of approaches that go beyond PB theory in a systematic way. In this topical review, we provide an update on the developments achieved in the self-consistent formulations of correlation-corrected Poisson-Boltzmann theory. We introduce a corresponding system of coupled non-linear equations for both continuum electrostatics with a uniform dielectric constant, and a structured solvent-a dipolar Coulomb fluid-including non-local effects. While the approach is only approximate and also limited to corrections in the so-called weak fluctuation regime, it allows us to include physically relevant effects, as we show for a range of applications of these equations. PMID:27357125

  7. A generalized Poisson and Poisson-Boltzmann solver for electrostatic environments.

    PubMed

    Fisicaro, G; Genovese, L; Andreussi, O; Marzari, N; Goedecker, S

    2016-01-01

    The computational study of chemical reactions in complex, wet environments is critical for applications in many fields. It is often essential to study chemical reactions in the presence of applied electrochemical potentials, taking into account the non-trivial electrostatic screening coming from the solvent and the electrolytes. As a consequence, the electrostatic potential has to be found by solving the generalized Poisson and the Poisson-Boltzmann equations for neutral and ionic solutions, respectively. In the present work, solvers for both problems have been developed. A preconditioned conjugate gradient method has been implemented for the solution of the generalized Poisson equation and the linear regime of the Poisson-Boltzmann, allowing to solve iteratively the minimization problem with some ten iterations of the ordinary Poisson equation solver. In addition, a self-consistent procedure enables us to solve the non-linear Poisson-Boltzmann problem. Both solvers exhibit very high accuracy and parallel efficiency and allow for the treatment of periodic, free, and slab boundary conditions. The solver has been integrated into the BigDFT and Quantum-ESPRESSO electronic-structure packages and will be released as an independent program, suitable for integration in other codes. PMID:26747797

  8. Numerical Considerations in the Computation of the Electrostatic Free Energy of Interaction within the Poisson-Boltzmann Theory

    NASA Astrophysics Data System (ADS)

    Micu, Alexandru M.; Bagheri, Babak; Ilin, Andrew V.; Scott, Ridgway; Pettitt, B. Montgomery

    1997-09-01

    We evaluate two different ways of calculating the contribution of the electrostatic stress to the free energy integral based on Sharp and Hönig's method within the finite difference nonlinear Poisson-Boltzmann equation method with the University of Houston Brownian Dynamics program. We show that only one of these approaches gives consistent results in the limit of zero ionic concentration for interactions of the order of magnitude of the hydrogen bond. The results are compared with results from both the linear Poisson-Boltzmann equation and the Debye-Hückel theory, for ion concentrations within the limits of validity of these approximate methods. We demonstrate this by application to DNA molecules.

  9. Assessment of Linear Finite-Difference Poisson-Boltzmann Solvers

    PubMed Central

    Wang, Jun; Luo, Ray

    2009-01-01

    CPU time and memory usage are two vital issues that any numerical solvers for the Poisson-Boltzmann equation have to face in biomolecular applications. In this study we systematically analyzed the CPU time and memory usage of five commonly used finite-difference solvers with a large and diversified set of biomolecular structures. Our comparative analysis shows that modified incomplete Cholesky conjugate gradient and geometric multigrid are the most efficient in the diversified test set. For the two efficient solvers, our test shows that their CPU times increase approximately linearly with the numbers of grids. Their CPU times also increase almost linearly with the negative logarithm of the convergence criterion at very similar rate. Our comparison further shows that geometric multigrid performs better in the large set of tested biomolecules. However, modified incomplete Cholesky conjugate gradient is superior to geometric multigrid in molecular dynamics simulations of tested molecules. We also investigated other significant components in numerical solutions of the Poisson-Boltzmann equation. It turns out that the time-limiting step is the free boundary condition setup for the linear systems for the selected proteins if the electrostatic focusing is not used. Thus, development of future numerical solvers for the Poisson-Boltzmann equation should balance all aspects of the numerical procedures in realistic biomolecular applications. PMID:20063271

  10. Assessment of linear finite-difference Poisson-Boltzmann solvers.

    PubMed

    Wang, Jun; Luo, Ray

    2010-06-01

    CPU time and memory usage are two vital issues that any numerical solvers for the Poisson-Boltzmann equation have to face in biomolecular applications. In this study, we systematically analyzed the CPU time and memory usage of five commonly used finite-difference solvers with a large and diversified set of biomolecular structures. Our comparative analysis shows that modified incomplete Cholesky conjugate gradient and geometric multigrid are the most efficient in the diversified test set. For the two efficient solvers, our test shows that their CPU times increase approximately linearly with the numbers of grids. Their CPU times also increase almost linearly with the negative logarithm of the convergence criterion at very similar rate. Our comparison further shows that geometric multigrid performs better in the large set of tested biomolecules. However, modified incomplete Cholesky conjugate gradient is superior to geometric multigrid in molecular dynamics simulations of tested molecules. We also investigated other significant components in numerical solutions of the Poisson-Boltzmann equation. It turns out that the time-limiting step is the free boundary condition setup for the linear systems for the selected proteins if the electrostatic focusing is not used. Thus, development of future numerical solvers for the Poisson-Boltzmann equation should balance all aspects of the numerical procedures in realistic biomolecular applications. PMID:20063271

  11. A comparison between simulation and poisson-boltzmann fields

    NASA Astrophysics Data System (ADS)

    Pettitt, B. Montgomery; Valdeavella, C. V.

    1999-11-01

    The electrostatic potentials from molecular dynamics (MD) trajectories and Poisson-Boltzmann calculations on a tetra peptide are compared to understand the validity of the resulting free energy surface. The Tuftsin peptide with sequence, Thr-Lys-Pro-Arg, in water is used for the comparison. The results obtained from the analysis of the MD trajectories for the total electrostatic potential at points on a grid using the Ewald technique are compared with the solution to the Poisson-Boltzmann (PB) equation averaged over the same set of configurations. The latter was solved using an optimal set of dielectric constant parameters. Structural averaging of the field over the MD simulation was examined in the context of the PB results. The detailed spatial variation of the electrostatic potential on the molecular surface are not qualitatively reproducible from MD to PB. Implications of using such field calculations and the implied free energies are discussed.

  12. Poisson-Boltzmann thermodynamics of counterions confined by curved hard walls

    NASA Astrophysics Data System (ADS)

    Šamaj, Ladislav; Trizac, Emmanuel

    2016-01-01

    We consider a set of identical mobile pointlike charges (counterions) confined to a domain with curved hard walls carrying a uniform fixed surface charge density, the system as a whole being electroneutral. Three domain geometries are considered: a pair of parallel plates, the cylinder, and the sphere. The particle system in thermal equilibrium is assumed to be described by the nonlinear Poisson-Boltzmann theory. While the effectively one-dimensional plates and the two-dimensional cylinder have already been solved, the three-dimensional sphere problem is not integrable. It is shown that the contact density of particles at the charged surface is determined by a first-order Abel differential equation of the second kind which is a counterpart of Enig's equation in the critical theory of gravitation and combustion or explosion. This equation enables us to construct the exact series solutions of the contact density in the regions of small and large surface charge densities. The formalism provides, within the mean-field Poisson-Boltzmann framework, the complete thermodynamics of counterions inside a charged sphere (salt-free system).

  13. Poisson-Boltzmann thermodynamics of counterions confined by curved hard walls.

    PubMed

    Šamaj, Ladislav; Trizac, Emmanuel

    2016-01-01

    We consider a set of identical mobile pointlike charges (counterions) confined to a domain with curved hard walls carrying a uniform fixed surface charge density, the system as a whole being electroneutral. Three domain geometries are considered: a pair of parallel plates, the cylinder, and the sphere. The particle system in thermal equilibrium is assumed to be described by the nonlinear Poisson-Boltzmann theory. While the effectively one-dimensional plates and the two-dimensional cylinder have already been solved, the three-dimensional sphere problem is not integrable. It is shown that the contact density of particles at the charged surface is determined by a first-order Abel differential equation of the second kind which is a counterpart of Enig's equation in the critical theory of gravitation and combustion or explosion. This equation enables us to construct the exact series solutions of the contact density in the regions of small and large surface charge densities. The formalism provides, within the mean-field Poisson-Boltzmann framework, the complete thermodynamics of counterions inside a charged sphere (salt-free system). PMID:26871116

  14. Poisson-Boltzmann-Nernst-Planck model

    NASA Astrophysics Data System (ADS)

    Zheng, Qiong; Wei, Guo-Wei

    2011-05-01

    The Poisson-Nernst-Planck (PNP) model is based on a mean-field approximation of ion interactions and continuum descriptions of concentration and electrostatic potential. It provides qualitative explanation and increasingly quantitative predictions of experimental measurements for the ion transport problems in many areas such as semiconductor devices, nanofluidic systems, and biological systems, despite many limitations. While the PNP model gives a good prediction of the ion transport phenomenon for chemical, physical, and biological systems, the number of equations to be solved and the number of diffusion coefficient profiles to be determined for the calculation directly depend on the number of ion species in the system, since each ion species corresponds to one Nernst-Planck equation and one position-dependent diffusion coefficient profile. In a complex system with multiple ion species, the PNP can be computationally expensive and parameter demanding, as experimental measurements of diffusion coefficient profiles are generally quite limited for most confined regions such as ion channels, nanostructures and nanopores. We propose an alternative model to reduce number of Nernst-Planck equations to be solved in complex chemical and biological systems with multiple ion species by substituting Nernst-Planck equations with Boltzmann distributions of ion concentrations. As such, we solve the coupled Poisson-Boltzmann and Nernst-Planck (PBNP) equations, instead of the PNP equations. The proposed PBNP equations are derived from a total energy functional by using the variational principle. We design a number of computational techniques, including the Dirichlet to Neumann mapping, the matched interface and boundary, and relaxation based iterative procedure, to ensure efficient solution of the proposed PBNP equations. Two protein molecules, cytochrome c551 and Gramicidin A, are employed to validate the proposed model under a wide range of bulk ion concentrations and external

  15. Poisson-Boltzmann-Nernst-Planck model.

    PubMed

    Zheng, Qiong; Wei, Guo-Wei

    2011-05-21

    The Poisson-Nernst-Planck (PNP) model is based on a mean-field approximation of ion interactions and continuum descriptions of concentration and electrostatic potential. It provides qualitative explanation and increasingly quantitative predictions of experimental measurements for the ion transport problems in many areas such as semiconductor devices, nanofluidic systems, and biological systems, despite many limitations. While the PNP model gives a good prediction of the ion transport phenomenon for chemical, physical, and biological systems, the number of equations to be solved and the number of diffusion coefficient profiles to be determined for the calculation directly depend on the number of ion species in the system, since each ion species corresponds to one Nernst-Planck equation and one position-dependent diffusion coefficient profile. In a complex system with multiple ion species, the PNP can be computationally expensive and parameter demanding, as experimental measurements of diffusion coefficient profiles are generally quite limited for most confined regions such as ion channels, nanostructures and nanopores. We propose an alternative model to reduce number of Nernst-Planck equations to be solved in complex chemical and biological systems with multiple ion species by substituting Nernst-Planck equations with Boltzmann distributions of ion concentrations. As such, we solve the coupled Poisson-Boltzmann and Nernst-Planck (PBNP) equations, instead of the PNP equations. The proposed PBNP equations are derived from a total energy functional by using the variational principle. We design a number of computational techniques, including the Dirichlet to Neumann mapping, the matched interface and boundary, and relaxation based iterative procedure, to ensure efficient solution of the proposed PBNP equations. Two protein molecules, cytochrome c551 and Gramicidin A, are employed to validate the proposed model under a wide range of bulk ion concentrations and external

  16. Poisson-Boltzmann-Nernst-Planck model

    SciTech Connect

    Zheng Qiong; Wei Guowei

    2011-05-21

    The Poisson-Nernst-Planck (PNP) model is based on a mean-field approximation of ion interactions and continuum descriptions of concentration and electrostatic potential. It provides qualitative explanation and increasingly quantitative predictions of experimental measurements for the ion transport problems in many areas such as semiconductor devices, nanofluidic systems, and biological systems, despite many limitations. While the PNP model gives a good prediction of the ion transport phenomenon for chemical, physical, and biological systems, the number of equations to be solved and the number of diffusion coefficient profiles to be determined for the calculation directly depend on the number of ion species in the system, since each ion species corresponds to one Nernst-Planck equation and one position-dependent diffusion coefficient profile. In a complex system with multiple ion species, the PNP can be computationally expensive and parameter demanding, as experimental measurements of diffusion coefficient profiles are generally quite limited for most confined regions such as ion channels, nanostructures and nanopores. We propose an alternative model to reduce number of Nernst-Planck equations to be solved in complex chemical and biological systems with multiple ion species by substituting Nernst-Planck equations with Boltzmann distributions of ion concentrations. As such, we solve the coupled Poisson-Boltzmann and Nernst-Planck (PBNP) equations, instead of the PNP equations. The proposed PBNP equations are derived from a total energy functional by using the variational principle. We design a number of computational techniques, including the Dirichlet to Neumann mapping, the matched interface and boundary, and relaxation based iterative procedure, to ensure efficient solution of the proposed PBNP equations. Two protein molecules, cytochrome c551 and Gramicidin A, are employed to validate the proposed model under a wide range of bulk ion concentrations and external

  17. Understanding of the Effects of Ionic Strength on the Bimolecular Rate Constant between Structurally Identified Redox Enzymes and Charged Substrates Using Numerical Simulations on the Basis of the Poisson-Boltzmann Equation.

    PubMed

    Sugimoto, Yu; Kitazumi, Yuki; Shirai, Osamu; Yamamoto, Masahiro; Kano, Kenji

    2016-03-31

    To understand electrostatic interactions in biomolecules, the bimolecular rate constants (k) between redox enzymes and charged substrates (in this study, redox mediators in the electrode reaction) were evaluated at various ionic strengths (I) for the mediated bioelectrocatalytic reaction. The k value between bilirubin oxidase (BOD) and positively charged mediators increased with I, while that between BOD and negatively charged mediators decreased with I. The opposite trend was observed for the reaction of glucose oxidase (GOD). In the case of noncharged mediators, the k value was independent of I for both BOD and GOD. These results reflect the electrostatic interactions between the enzymes and the mediators. Furthermore, we estimated k/k° (k° being the thermodynamic rate constant) by numerical simulation (finite element method) based on the Poisson-Boltzmann (PB) equation. By considering the charges of individual atoms involved in the amino acids around the substrate binding sites in the enzymes, the simulated k/k° values well reproduced the experimental data. In conclusion, k/k° can be predicted by PB-based simulation as long as the crystal structure of the enzyme and the substrate binding site are known. PMID:26956542

  18. Dielectric Boundary Forces in Numerical Poisson-Boltzmann Methods: Theory and Numerical Strategies.

    PubMed

    Cai, Qin; Ye, Xiang; Wang, Jun; Luo, Ray

    2011-10-01

    Continuum modeling of electrostatic interactions based upon the numerical solutions of the Poisson-Boltzmann equation has been widely adopted in biomolecular applications. To extend their applications to molecular dynamics and energy minimization, robust and efficient methodologies to compute solvation forces must be developed. In this study, we have first reviewed the theory for the computation of dielectric boundary forces based on the definition of the Maxwell stress tensor. This is followed by a new formulation of the dielectric boundary force suitable for the finite-difference Poisson-Boltzmann methods. We have validated the new formulation with idealized analytical systems and realistic molecular systems. PMID:22125339

  19. Dielectric boundary force in numerical Poisson-Boltzmann methods: Theory and numerical strategies

    NASA Astrophysics Data System (ADS)

    Cai, Qin; Ye, Xiang; Wang, Jun; Luo, Ray

    2011-10-01

    Continuum modeling of electrostatic interactions based upon the numerical solutions of the Poisson-Boltzmann equation has been widely adopted in biomolecular applications. To extend their applications to molecular dynamics and energy minimization, robust and efficient methodologies to compute solvation forces must be developed. In this study, we have first reviewed the theory for the computation of dielectric boundary force based on the definition of the Maxwell stress tensor. This is followed by a new formulation of the dielectric boundary force suitable for the finite-difference Poisson-Boltzmann methods. We have validated the new formulation with idealized analytical systems and realistic molecular systems.

  20. Beyond Poisson-Boltzmann: Numerical Sampling of Charge Density Fluctuations.

    PubMed

    Poitevin, Frédéric; Delarue, Marc; Orland, Henri

    2016-07-01

    We present a method aimed at sampling charge density fluctuations in Coulomb systems. The derivation follows from a functional integral representation of the partition function in terms of charge density fluctuations. Starting from the mean-field solution given by the Poisson-Boltzmann equation, an original approach is proposed to numerically sample fluctuations around it, through the propagation of a Langevin-like stochastic partial differential equation (SPDE). The diffusion tensor of the SPDE can be chosen so as to avoid the numerical complexity linked to long-range Coulomb interactions, effectively rendering the theory completely local. A finite-volume implementation of the SPDE is described, and the approach is illustrated with preliminary results on the study of a system made of two like-charge ions immersed in a bath of counterions. PMID:27075231

  1. Polarizable Atomic Multipole Solutes in a Poisson-Boltzmann Continuum

    PubMed Central

    Schnieders, Michael J.; Baker, Nathan A.; Ren, Pengyu; Ponder, Jay W.

    2008-01-01

    Modeling the change in the electrostatics of organic molecules upon moving from vacuum into solvent, due to polarization, has long been an interesting problem. In vacuum, experimental values for the dipole moments and polarizabilities of small, rigid molecules are known to high accuracy; however, it has generally been difficult to determine these quantities for a polar molecule in water. A theoretical approach introduced by Onsager used vacuum properties of small molecules, including polarizability, dipole moment and size, to predict experimentally known permittivities of neat liquids via the Poisson equation. Since this important advance in understanding the condensed phase, a large number of computational methods have been developed to study solutes embedded in a continuum via numerical solutions to the Poisson-Boltzmann equation (PBE). Only recently have the classical force fields used for studying biomolecules begun to include explicit polarization in their functional forms. Here we describe the theory underlying a newly developed Polarizable Multipole Poisson-Boltzmann (PMPB) continuum electrostatics model, which builds on the Atomic Multipole Optimized Energetics for Biomolecular Applications (AMOEBA) force field. As an application of the PMPB methodology, results are presented for several small folded proteins studied by molecular dynamics in explicit water as well as embedded in the PMPB continuum. The dipole moment of each protein increased on average by a factor of 1.27 in explicit water and 1.26 in continuum solvent. The essentially identical electrostatic response in both models suggests that PMPB electrostatics offers an efficient alternative to sampling explicit solvent molecules for a variety of interesting applications, including binding energies, conformational analysis, and pKa prediction. Introduction of 150 mM salt lowered the electrostatic solvation energy between 2–13 kcal/mole, depending on the formal charge of the protein, but had only a

  2. Unsteady electroosmosis in a microchannel with Poisson-Boltzmann charge distribution.

    PubMed

    Chang, Chien C; Kuo, Chih-Yu; Wang, Chang-Yi

    2011-11-01

    The present study is concerned with unsteady electroosmotic flow (EOF) in a microchannel with the electric charge distribution described by the Poisson-Boltzmann (PB) equation. The nonlinear PB equation is solved by a systematic perturbation with respect to the parameter λ which measures the strength of the wall zeta potential relative to the thermal potential. In the small λ limits (λ<1), we recover the linearized PB equation - the Debye-Hückel approximation. The solutions obtained by using only three terms in the perturbation series are shown to be accurate with errors <1% for λ up to 2. The accurate solution to the PB equation is then used to solve the electrokinetic fluid transport equation for two types of unsteady flow: transient flow driven by a suddenly applied voltage and oscillatory flow driven by a time-harmonic voltage. The solution for the transient flow has important implications on EOF as an effective means for transporting electrolytes in microchannels with various electrokinetic widths. On the other hand, the solution for the oscillatory flow is shown to have important physical implications on EOF in mixing electrolytes in terms of the amplitude and phase of the resulting time-harmonic EOF rate, which depends on the applied frequency and the electrokinetic width of the microchannel as well as on the parameter λ. PMID:22072500

  3. A Fast and Robust Poisson-Boltzmann Solver Based on Adaptive Cartesian Grids.

    PubMed

    Boschitsch, Alexander H; Fenley, Marcia O

    2011-05-10

    An adaptive Cartesian grid (ACG) concept is presented for the fast and robust numerical solution of the 3D Poisson-Boltzmann Equation (PBE) governing the electrostatic interactions of large-scale biomolecules and highly charged multi-biomolecular assemblies such as ribosomes and viruses. The ACG offers numerous advantages over competing grid topologies such as regular 3D lattices and unstructured grids. For very large biological molecules and multi-biomolecule assemblies, the total number of grid-points is several orders of magnitude less than that required in a conventional lattice grid used in the current PBE solvers thus allowing the end user to obtain accurate and stable nonlinear PBE solutions on a desktop computer. Compared to tetrahedral-based unstructured grids, ACG offers a simpler hierarchical grid structure, which is naturally suited to multigrid, relieves indirect addressing requirements and uses fewer neighboring nodes in the finite difference stencils. Construction of the ACG and determination of the dielectric/ionic maps are straightforward, fast and require minimal user intervention. Charge singularities are eliminated by reformulating the problem to produce the reaction field potential in the molecular interior and the total electrostatic potential in the exterior ionic solvent region. This approach minimizes grid-dependency and alleviates the need for fine grid spacing near atomic charge sites. The technical portion of this paper contains three parts. First, the ACG and its construction for general biomolecular geometries are described. Next, a discrete approximation to the PBE upon this mesh is derived. Finally, the overall solution procedure and multigrid implementation are summarized. Results obtained with the ACG-based PBE solver are presented for: (i) a low dielectric spherical cavity, containing interior point charges, embedded in a high dielectric ionic solvent - analytical solutions are available for this case, thus allowing rigorous

  4. Calculation of electron transfer reorganization energies using the finite difference Poisson-Boltzmann model.

    PubMed Central

    Sharp, K A

    1998-01-01

    A description is given of a method to calculate the electron transfer reorganization energy (lambda) in proteins using the linear or nonlinear Poisson-Boltzmann (PB) equation. Finite difference solutions to the linear PB equation are then used to calculate lambda for intramolecular electron transfer reactions in the photosynthetic reaction center from Rhodopseudomonas viridis and the ruthenated heme proteins cytochrome c, myoglobin, and cytochrome b and for intermolecular electron transfer between two cytochrome c molecules. The overall agreement with experiment is good considering both the experimental and computational difficulties in estimating lambda. The calculations show that acceptor/donor separation and position of the cofactors with respect to the protein/solvent boundary are equally important and, along with the overall polarizability of the protein, are the major determinants of lambda. In agreement with previous studies, the calculations show that the protein provides a low reorganization environment for electron transfer. Agreement with experiment is best if the protein polarizability is modeled with a low (<8) average effective dielectric constant. The effect of buried waters on the reorganization energy of the photosynthetic reaction center was examined and found to make a contribution ranging from 0.05 eV to 0.27 eV, depending on the donor/acceptor pair. PMID:9512022

  5. Ionic screening of charged impurities in electrolytically gated graphene: A partially linearized Poisson-Boltzmann model.

    PubMed

    Sharma, P; Mišković, Z L

    2015-10-01

    We present a model describing the electrostatic interactions across a structure that consists of a single layer of graphene with large area, lying above an oxide substrate of finite thickness, with its surface exposed to a thick layer of liquid electrolyte containing salt ions. Our goal is to analyze the co-operative screening of the potential fluctuation in a doped graphene due to randomness in the positions of fixed charged impurities in the oxide by the charge carriers in graphene and by the mobile ions in the diffuse layer of the electrolyte. In order to account for a possibly large potential drop in the diffuse later that may arise in an electrolytically gated graphene, we use a partially linearized Poisson-Boltzmann (PB) model of the electrolyte, in which we solve a fully nonlinear PB equation for the surface average of the potential in one dimension, whereas the lateral fluctuations of the potential in graphene are tackled by linearizing the PB equation about the average potential. In this way, we are able to describe the regime of equilibrium doping of graphene to large densities for arbitrary values of the ion concentration without restrictions to the potential drop in the electrolyte. We evaluate the electrostatic Green's function for the partially linearized PB model, which is used to express the screening contributions of the graphene layer and the nearby electrolyte by means of an effective dielectric function. We find that, while the screened potential of a single charged impurity at large in-graphene distances exhibits a strong dependence on the ion concentration in the electrolyte and on the doping density in graphene, in the case of a spatially correlated two-dimensional ensemble of impurities, this dependence is largely suppressed in the autocovariance of the fluctuating potential. PMID:26450303

  6. A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules

    NASA Astrophysics Data System (ADS)

    Geng, Weihua; Krasny, Robert

    2013-08-01

    We present a treecode-accelerated boundary integral (TABI) solver for electrostatics of solvated biomolecules described by the linear Poisson-Boltzmann equation. The method employs a well-conditioned boundary integral formulation for the electrostatic potential and its normal derivative on the molecular surface. The surface is triangulated and the integral equations are discretized by centroid collocation. The linear system is solved by GMRES iteration and the matrix-vector product is carried out by a Cartesian treecode which reduces the cost from O(N2) to O(NlogN), where N is the number of faces in the triangulation. The TABI solver is applied to compute the electrostatic solvation energy in two cases, the Kirkwood sphere and a solvated protein. We present the error, CPU time, and memory usage, and compare results for the Poisson-Boltzmann and Poisson equations. We show that the treecode approximation error can be made smaller than the discretization error, and we compare two versions of the treecode, one with uniform clusters and one with non-uniform clusters adapted to the molecular surface. For the protein test case, we compare TABI results with those obtained using the grid-based APBS code, and we also present parallel TABI simulations using up to eight processors. We find that the TABI solver exhibits good serial and parallel performance combined with relatively simple implementation, efficient memory usage, and geometric adaptability.

  7. Features of CPB: a Poisson-Boltzmann solver that uses an adaptive Cartesian grid.

    PubMed

    Fenley, Marcia O; Harris, Robert C; Mackoy, Travis; Boschitsch, Alexander H

    2015-02-01

    The capabilities of an adaptive Cartesian grid (ACG)-based Poisson-Boltzmann (PB) solver (CPB) are demonstrated. CPB solves various PB equations with an ACG, built from a hierarchical octree decomposition of the computational domain. This procedure decreases the number of points required, thereby reducing computational demands. Inside the molecule, CPB solves for the reaction-field component (ϕrf ) of the electrostatic potential (ϕ), eliminating the charge-induced singularities in ϕ. CPB can also use a least-squares reconstruction method to improve estimates of ϕ at the molecular surface. All surfaces, which include solvent excluded, Gaussians, and others, are created analytically, eliminating errors associated with triangulated surfaces. These features allow CPB to produce detailed surface maps of ϕ and compute polar solvation and binding free energies for large biomolecular assemblies, such as ribosomes and viruses, with reduced computational demands compared to other Poisson-Boltzmann equation solvers. The reader is referred to http://www.continuum-dynamics.com/solution-mm.html for how to obtain the CPB software. PMID:25430617

  8. Numerical Poisson-Boltzmann Model for Continuum Membrane Systems.

    PubMed

    Botello-Smith, Wesley M; Liu, Xingping; Cai, Qin; Li, Zhilin; Zhao, Hongkai; Luo, Ray

    2013-01-01

    Membrane protein systems are important computational research topics due to their roles in rational drug design. In this study, we developed a continuum membrane model utilizing a level set formulation under the numerical Poisson-Boltzmann framework within the AMBER molecular mechanics suite for applications such as protein-ligand binding affinity and docking pose predictions. Two numerical solvers were adapted for periodic systems to alleviate possible edge effects. Validation on systems ranging from organic molecules to membrane proteins up to 200 residues, demonstrated good numerical properties. This lays foundations for sophisticated models with variable dielectric treatments and second-order accurate modeling of solvation interactions. PMID:23439886

  9. Poisson-Boltzmann study of the effective electrostatic interaction between colloids at an electrolyte interface

    NASA Astrophysics Data System (ADS)

    Majee, Arghya; Bier, Markus; Dietrich, S.

    2016-08-01

    The effective electrostatic interaction between a pair of colloids, both of them located close to each other at an electrolyte interface, is studied by employing the full, nonlinear Poisson-Boltzmann (PB) theory within classical density functional theory. Using a simplified yet appropriate model, all contributions to the effective interaction are obtained exactly, albeit numerically. The comparison between our results and those obtained within linearized PB theory reveals that the latter overestimates these contributions significantly at short inter-particle separations. Whereas the surface contributions to the linear and the nonlinear PB results differ only quantitatively, the line contributions show qualitative differences at short separations. Moreover, a dependence of the line contribution on the solvation properties of the two adjacent fluids is found, which is absent within the linear theory. Our results are expected to enrich the understanding of effective interfacial interactions between colloids.

  10. Electrostatic interactions in protein solution--a comparison between Poisson-Boltzmann and Monte Carlo calculations.

    PubMed

    Fushiki, M; Svensson, B; Jönsson, B; Woodward, C E

    1991-09-01

    The accuracy of the Poisson-Boltzmann (PB) approximation and its linearized version is investigated by comparison to results obtained from Monte Carlo simulations. The dependence of the calcium binding constant of the protein calbindin as a function of salt concentration and mutation is used as a test case. The protein is modeled as a collection of charged and neutral spheres immersed in the electrolyte solution. The PB equation is solved using a finite difference technique on a grid in a spherical polar coordinate system, which is the preferred choice for a globular protein like calbindin. Both MC and PB give quantitative agreement with experimental results. The linearized PB equation is almost as accurate, but it becomes less reliable in systems with divalent ions. However, the linearized PB equation fails to describe the concentration profiles for cations and anions outside the protein even in a 1:1 salt solution. PMID:1790295

  11. AFMPB: An adaptive fast multipole Poisson Boltzmann solver for calculating electrostatics in biomolecular systems

    SciTech Connect

    Lu, Benzhuo; Cheng, Xiaolin; Huang, Jingfang; McCammon, Jonathan

    2010-01-01

    A Fortran program package is introduced for rapid evaluation of the electrostatic potentials and forces in biomolecular systems modeled by the linearized Poisson-Boltzmann equation. The numerical solver utilizes a well-conditioned boundary integral equation (BIE) formulation, a node-patch discretization scheme, a Krylov subspace iterative solver package with reverse communication protocols, and an adaptive new version of fast multipole method in which the exponential expansions are used to diagonalize the multipole-to-local translations. The program and its full description, as well as several closely related libraries and utility tools are available at http://mccammon.ucsd.edu/. This paper is a brief summary of the program: the algorithms, the implementation and the usage.

  12. Analytic Thermodynamic Calculations for an Immobilized Molecule under Poisson-Boltzmann Interactions using a Spheroidal Geometry

    NASA Astrophysics Data System (ADS)

    Ambia-Garrido, Joaquin; Pettitt, Montgomery

    2008-03-01

    The change in some thermodynamic quantities such as Gibbs' free energy, entropy and enthalpy of the binding of a particle tethered to a surface or particle are analytically calculated. These particles are considered ellipsoids and submerged in a liquid. The ionic strength of the media allows the linearized version of the Poisson-Boltzmann equation (from the theory of the double layer interaction) to properly describe the interactions between an ion penetrable spheroid and a hard plate. We believe that this is an adequate model for a DNA chip and the predicted electrostatic effects suggest the feasibility of electronic control and detection of DNA hybridization and design of chips underline avoiding the DNA folding problem.

  13. Electro-osmosis of non-Newtonian fluids in porous media using lattice Poisson-Boltzmann method.

    PubMed

    Chen, Simeng; He, Xinting; Bertola, Volfango; Wang, Moran

    2014-12-15

    Electro-osmosis in porous media has many important applications in various areas such as oil and gas exploitation and biomedical detection. Very often, fluids relevant to these applications are non-Newtonian because of the shear-rate dependent viscosity. The purpose of this study was to investigate the behaviors and physical mechanism of electro-osmosis of non-Newtonian fluids in porous media. Model porous microstructures (granular, fibrous, and network) were created by a random generation-growth method. The nonlinear governing equations of electro-kinetic transport for a power-law fluid were solved by the lattice Poisson-Boltzmann method (LPBM). The model results indicate that: (i) the electro-osmosis of non-Newtonian fluids exhibits distinct nonlinear behaviors compared to that of Newtonian fluids; (ii) when the bulk ion concentration or zeta potential is high enough, shear-thinning fluids exhibit higher electro-osmotic permeability, while shear-thickening fluids lead to the higher electro-osmotic permeability for very low bulk ion concentration or zeta potential; (iii) the effect of the porous medium structure depends significantly on the constitutive parameters: for fluids with large constitutive coefficients strongly dependent on the power-law index, the network structure shows the highest electro-osmotic permeability while the granular structure exhibits the lowest permeability on the entire range of power law indices considered; when the dependence of the constitutive coefficient on the power law index is weaker, different behaviors can be observed especially in case of strong shear thinning. PMID:25278358

  14. Progress in developing Poisson-Boltzmann equation solvers

    PubMed Central

    Li, Chuan; Li, Lin; Petukh, Marharyta; Alexov, Emil

    2013-01-01

    This review outlines the recent progress made in developing more accurate and efficient solutions to model electrostatics in systems comprised of bio-macromolecules and nano-objects, the last one referring to objects that do not have biological function themselves but nowadays are frequently used in biophysical and medical approaches in conjunction with bio-macromolecules. The problem of modeling macromolecular electrostatics is reviewed from two different angles: as a mathematical task provided the specific definition of the system to be modeled and as a physical problem aiming to better capture the phenomena occurring in the real experiments. In addition, specific attention is paid to methods to extend the capabilities of the existing solvers to model large systems toward applications of calculations of the electrostatic potential and energies in molecular motors, mitochondria complex, photosynthetic machinery and systems involving large nano-objects. PMID:24199185

  15. Progress in developing Poisson-Boltzmann equation solvers.

    PubMed

    Li, Chuan; Li, Lin; Petukh, Marharyta; Alexov, Emil

    2013-03-01

    This review outlines the recent progress made in developing more accurate and efficient solutions to model electrostatics in systems comprised of bio-macromolecules and nano-objects, the last one referring to objects that do not have biological function themselves but nowadays are frequently used in biophysical and medical approaches in conjunction with bio-macromolecules. The problem of modeling macromolecular electrostatics is reviewed from two different angles: as a mathematical task provided the specific definition of the system to be modeled and as a physical problem aiming to better capture the phenomena occurring in the real experiments. In addition, specific attention is paid to methods to extend the capabilities of the existing solvers to model large systems toward applications of calculations of the electrostatic potential and energies in molecular motors, mitochondria complex, photosynthetic machinery and systems involving large nano-objects. PMID:24199185

  16. An Adaptive Fast Multipole Boundary Element Method for Poisson-Boltzmann Electrostatics

    SciTech Connect

    Lu, Benzhuo; Cheng, Xiaolin; Huang, Jingfang; McCammon, Jonathan

    2009-01-01

    The numerical solution of the Poisson Boltzmann (PB) equation is a useful but a computationally demanding tool for studying electrostatic solvation effects in chemical and biomolecular systems. Recently, we have described a boundary integral equation-based PB solver accelerated by a new version of the fast multipole method (FMM). The overall algorithm shows an order N complexity in both the computational cost and memory usage. Here, we present an updated version of the solver by using an adaptive FMM for accelerating the convolution type matrix-vector multiplications. The adaptive algorithm, when compared to our previous nonadaptive one, not only significantly improves the performance of the overall memory usage but also remarkably speeds the calculation because of an improved load balancing between the local- and far-field calculations. We have also implemented a node-patch discretization scheme that leads to a reduction of unknowns by a factor of 2 relative to the constant element method without sacrificing accuracy. As a result of these improvements, the new solver makes the PB calculation truly feasible for large-scale biomolecular systems such as a 30S ribosome molecule even on a typical 2008 desktop computer.

  17. A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver

    NASA Astrophysics Data System (ADS)

    Geng, Weihua; Jacob, Ferosh

    2013-06-01

    In this paper, we present a GPU-accelerated direct-sum boundary integral method to solve the linear Poisson-Boltzmann (PB) equation. In our method, a well-posed boundary integral formulation is used to ensure the fast convergence of Krylov subspace based linear algebraic solver such as the GMRES. The molecular surfaces are discretized with flat triangles and centroid collocation. To speed up our method, we take advantage of the parallel nature of the boundary integral formulation and parallelize the schemes within CUDA shared memory architecture on GPU. The schemes use only 11N+6Nc size-of-double device memory for a biomolecule with N triangular surface elements and Nc partial charges. Numerical tests of these schemes show well-maintained accuracy and fast convergence. The GPU implementation using one GPU card (Nvidia Tesla M2070) achieves 120-150X speed-up to the implementation using one CPU (Intel L5640 2.27 GHz). With our approach, solving PB equations on well-discretized molecular surfaces with up to 300,000 boundary elements will take less than about 10 min, hence our approach is particularly suitable for fast electrostatics computations on small to medium biomolecules.

  18. AFMPB: An adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems

    NASA Astrophysics Data System (ADS)

    Lu, Benzhuo; Cheng, Xiaolin; Huang, Jingfang; McCammon, J. Andrew

    2013-11-01

    A Fortran program package is introduced for rapid evaluation of the electrostatic potentials and forces in biomolecular systems modeled by the linearized Poisson-Boltzmann equation. The numerical solver utilizes a well-conditioned boundary integral equation (BIE) formulation, a node-patch discretization scheme, a Krylov subspace iterative solver package with reverse communication protocols, and an adaptive new version of the fast multipole method in which the exponential expansions are used to diagonalize the multipole-to-local translations. The program and its full description, as well as several closely related libraries and utility tools are available at http://lsec.cc.ac.cn/~lubz/afmpb.html and a mirror site at http://mccammon.ucsd.edu/. This paper is a brief summary of the program: the algorithms, the implementation and the usage. Restrictions: Only three or six significant digits options are provided in this version. Unusual features: Most of the codes are in Fortran77 style. Memory allocation functions from Fortran90 and above are used in a few subroutines. Additional comments: The current version of the codes is designed and written for single core/processor desktop machines. Check http://lsec.cc.ac.cn/lubz/afmpb.html for updates and changes. Running time: The running time varies with the number of discretized elements (N) in the system and their distributions. In most cases, it scales linearly as a function of N.

  19. Binding of phosphorus-containing inhibitors to thermolysin studied by the Poisson-Boltzmann method.

    PubMed Central

    Shen, J.; Wendoloski, J.

    1995-01-01

    Zinc endopeptidase thermolysin can be inhibited by a series of phosphorus-containing peptide analogues, Cbz-Gly-psi (PO2)-X-Leu-Y-R (ZGp(X)L(y)R), where X = NH, O, or CH2; Y = NH or O; R = Leu, Ala, Gly, Phe, H, or CH3. The affinity correlation as well as an X-ray crystallography study suggest that these inhibitors bind to thermolysin in an identical mode. In this work, we calculate the electrostatic binding free energies for a series of 13 phosphorus-containing inhibitors with modifications at X, Y, and R moieties using finite difference solution to the Poisson-Boltzmann equation. A method has been developed to include the solvation entropy changes due to binding different ligands to a macromolecule. We demonstrate that the electrostatic energy and empirically derived solvation entropy can account for most of the binding energy differences in this series. By analyzing the binding contribution from individual residues, we show that the energy of a hydrogen bond is not confined to the donor and acceptor. In particular, the positive charges on Zn and Arg 203, which are not the acceptors, contribute significantly to the hydrogen bonds between two amides of ZGpLL and the thermolysin. PMID:7795520

  20. Features of CPB: A Poisson-Boltzmann Solver that Uses an Adaptive Cartesian Grid

    PubMed Central

    Harris, Robert C.; Mackoy, Travis

    2014-01-01

    The capabilities of an adaptive Cartesian grid (ACG)-based Poisson-Boltzmann (PB) solver (CPB) are demonstrated. CPB solves various PB equations with an ACG, built from a hierarchical octree decomposition of the computational domain. This procedure decreases the number of points required, thereby reducing computational demands. Inside the molecule, CPB solves for the reaction-field component (ϕrf) of the electrostatic potential (ϕ), eliminating the charge-induced singularities in ϕ. CPB can also use a least-squares reconstruction method to improve estimates of ϕ at the molecular surface. All surfaces, which include solvent excluded, Gaussians and others, are created analytically, eliminating errors associated with triangulated surfaces. These features allow CPB to produce detailed surface maps of ϕ and compute polar solvation and binding free energies for large biomolecular assemblies, such as ribosomes and viruses, with reduced computational demands compared to other PBE solvers. The reader is referred to http://www.continuum-dynamics.com/solution-mm.html for how to obtain the CPB software. PMID:25430617

  1. iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver (APBS).

    PubMed

    Konecny, Robert; Baker, Nathan A; McCammon, J Andrew

    2012-07-26

    The Adaptive Poisson-Boltzmann Solver (APBS) is a state-of-the-art suite for performing Poisson-Boltzmann electrostatic calculations on biomolecules. The iAPBS package provides a modular programmatic interface to the APBS library of electrostatic calculation routines. The iAPBS interface library can be linked with a FORTRAN or C/C++ program thus making all of the APBS functionality available from within the application. Several application modules for popular molecular dynamics simulation packages - Amber, NAMD and CHARMM are distributed with iAPBS allowing users of these packages to perform implicit solvent electrostatic calculations with APBS. PMID:22905037

  2. iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver

    SciTech Connect

    Konecny, Robert; Baker, Nathan A.; McCammon, J. A.

    2012-07-26

    The Adaptive Poisson-Boltzmann Solver (APBS) is a state-of-the-art suite for performing Poisson-Boltzmann electrostatic calculations on biomolecules. The iAPBS package provides a modular programmatic interface to the APBS library of electrostatic calculation routines. The iAPBS interface library can be linked with a Fortran or C/C++ program thus making all of the APBS functionality available from within the application. Several application modules for popular molecular dynamics simulation packages -- Amber, NAMD and CHARMM are distributed with iAPBS allowing users of these packages to perform implicit solvent electrostatic calculations with APBS.

  3. Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamics simulation and a Poisson-Boltzmann approach

    PubMed Central

    Robbins, Timothy J.; Ziebarth, Jesse D.; Wang, Yongmei

    2014-01-01

    The ion atmosphere created by monovalent (Na+) or divalent (Mg2+) cations surrounding a B-form DNA duplex were examined using atomistic molecular dynamics (MD) simulations and the nonlinear Poisson-Boltzmann (PB) equation. The ion distributions predicted by the two methods were compared using plots of radial and two-dimensional cation concentrations and by calculating the total number of cations and net solution charge surrounding the DNA. Na+ ion distributions near the DNA were more diffuse in PB calculations than in corresponding MD simulations, with PB calculations predicting lower concentrations near DNA groove sites and phosphate groups and a higher concentration in the region between these locations. Other than this difference, the Na+ distributions generated by the two methods largely agreed, as both predicted similar locations of high Na+ concentration and nearly identical values of the number of cations and the net solution charge at all distances from the DNA. In contrast, there was greater disagreement between the two methods for Mg2+ cation concentration profiles, as both the locations and magnitudes of peaks in Mg2+ concentration were different. Despite experimental and simulation observations that Mg2+ typically maintains its first solvation shell when interacting with nucleic acids, modeling Mg2+ as an unsolvated ion during PB calculations improved the agreement of the Mg2+ ion atmosphere predicted by the two methods and allowed for values of the number of bound ions and net solution charge surrounding the DNA from PB calculations that approached the values observed in MD simulations. PMID:24443090

  4. Incorporating Dipolar Solvents with Variable Density in Poisson-Boltzmann Electrostatics

    PubMed Central

    Azuara, Cyril; Orland, Henri; Bon, Michael; Koehl, Patrice; Delarue, Marc

    2008-01-01

    We describe a new way to calculate the electrostatic properties of macromolecules that goes beyond the classical Poisson-Boltzmann treatment with only a small extra CPU cost. The solvent region is no longer modeled as a homogeneous dielectric media but rather as an assembly of self-orienting interacting dipoles of variable density. The method effectively unifies both the Poisson-centric view and the Langevin Dipole model. The model results in a variable dielectric constant \\documentclass[10pt]{article} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{pmc} \\usepackage[Euler]{upgreek} \\pagestyle{empty} \\oddsidemargin -1.0in \\begin{document} \\begin{equation*}{\\epsilon}({\\vec{r}})\\end{equation*}\\end{document} in the solvent region and also in a variable solvent density \\documentclass[10pt]{article} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{pmc} \\usepackage[Euler]{upgreek} \\pagestyle{empty} \\oddsidemargin -1.0in \\begin{document} \\begin{equation*}{\\rho}({\\vec{r}})\\end{equation*}\\end{document} that depends on the nature of the closest exposed solute atoms. The model was calibrated using small molecules and ions solvation data with only two adjustable parameters, namely the size and dipolar moment of the solvent. Hydrophobicity scales derived from the solvent density profiles agree very well with independently derived hydrophobicity scales, both at the atomic or residue level. Dimerization interfaces in homodimeric proteins or lipid-binding regions in membrane proteins clearly appear as poorly solvated patches on the solute accessible surface. Comparison of the thermally averaged solvent density of this model with the one derived from molecular dynamics simulations shows qualitative agreement on a coarse-grained level. Because this calculation is much more

  5. PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.

    PubMed

    Azuara, Cyril; Lindahl, Erik; Koehl, Patrice; Orland, Henri; Delarue, Marc

    2006-07-01

    We describe a new way to calculate the electrostatic properties of macromolecules which eliminates the assumption of a constant dielectric value in the solvent region, resulting in a Generalized Poisson-Boltzmann-Langevin equation (GPBLE). We have implemented a web server (http://lorentz.immstr.pasteur.fr/pdb_hydro.php) that both numerically solves this equation and uses the resulting water density profiles to place water molecules at preferred sites of hydration. Surface atoms with high or low hydration preference can be easily displayed using a simple PyMol script, allowing for the tentative prediction of the dimerization interface in homodimeric proteins, or lipid binding regions in membrane proteins. The web site includes options that permit mutations in the sequence as well as reconstruction of missing side chain and/or main chain atoms. These tools are accessible independently from the electrostatics calculation, and can be used for other modeling purposes. We expect this web server to be useful to structural biologists, as the knowledge of solvent density should prove useful to get better fits at low resolution for X-ray diffraction data and to computational biologists, for whom these profiles could improve the calculation of interaction energies in water between ligands and receptors in docking simulations. PMID:16845031

  6. Nonlinear ordinary difference equations

    NASA Technical Reports Server (NTRS)

    Caughey, T. K.

    1979-01-01

    Future space vehicles will be relatively large and flexible, and active control will be necessary to maintain geometrical configuration. While the stresses and strains in these space vehicles are not expected to be excessively large, their cumulative effects will cause significant geometrical nonlinearities to appear in the equations of motion, in addition to the nonlinearities caused by material properties. Since the only effective tool for the analysis of such large complex structures is the digital computer, it will be necessary to gain a better understanding of the nonlinear ordinary difference equations which result from the time discretization of the semidiscrete equations of motion for such structures.

  7. Nonlinear gyrokinetic equations

    SciTech Connect

    Dubin, D.H.E.; Krommes, J.A.; Oberman, C.; Lee, W.W.

    1983-03-01

    Nonlinear gyrokinetic equations are derived from a systematic Hamiltonian theory. The derivation employs Lie transforms and a noncanonical perturbation theory first used by Littlejohn for the simpler problem of asymptotically small gyroradius. For definiteness, we emphasize the limit of electrostatic fluctuations in slab geometry; however, there is a straight-forward generalization to arbitrary field geometry and electromagnetic perturbations. An energy invariant for the nonlinear system is derived, and various of its limits are considered. The weak turbulence theory of the equations is examined. In particular, the wave kinetic equation of Galeev and Sagdeev is derived from an asystematic truncation of the equations, implying that this equation fails to consider all gyrokinetic effects. The equations are simplified for the case of small but finite gyroradius and put in a form suitable for efficient computer simulation. Although it is possible to derive the Terry-Horton and Hasegawa-Mima equations as limiting cases of our theory, several new nonlinear terms absent from conventional theories appear and are discussed.

  8. Adapting Poisson-Boltzmann to the self-consistent mean field theory: Application to protein side-chain modeling

    NASA Astrophysics Data System (ADS)

    Koehl, Patrice; Orland, Henri; Delarue, Marc

    2011-08-01

    We present an extension of the self-consistent mean field theory for protein side-chain modeling in which solvation effects are included based on the Poisson-Boltzmann (PB) theory. In this approach, the protein is represented with multiple copies of its side chains. Each copy is assigned a weight that is refined iteratively based on the mean field energy generated by the rest of the protein, until self-consistency is reached. At each cycle, the variational free energy of the multi-copy system is computed; this free energy includes the internal energy of the protein that accounts for vdW and electrostatics interactions and a solvation free energy term that is computed using the PB equation. The method converges in only a few cycles and takes only minutes of central processing unit time on a commodity personal computer. The predicted conformation of each residue is then set to be its copy with the highest weight after convergence. We have tested this method on a database of hundred highly refined NMR structures to circumvent the problems of crystal packing inherent to x-ray structures. The use of the PB-derived solvation free energy significantly improves prediction accuracy for surface side chains. For example, the prediction accuracies for χ1 for surface cysteine, serine, and threonine residues improve from 68%, 35%, and 43% to 80%, 53%, and 57%, respectively. A comparison with other side-chain prediction algorithms demonstrates that our approach is consistently better in predicting the conformations of exposed side chains.

  9. Nonlinear differential equations

    SciTech Connect

    Dresner, L.

    1988-01-01

    This report is the text of a graduate course on nonlinear differential equations given by the author at the University of Wisconsin-Madison during the summer of 1987. The topics covered are: direction fields of first-order differential equations; the Lie (group) theory of ordinary differential equations; similarity solutions of second-order partial differential equations; maximum principles and differential inequalities; monotone operators and iteration; complementary variational principles; and stability of numerical methods. The report should be of interest to graduate students, faculty, and practicing scientists and engineers. No prior knowledge is required beyond a good working knowledge of the calculus. The emphasis is on practical results. Most of the illustrative examples are taken from the fields of nonlinear diffusion, heat and mass transfer, applied superconductivity, and helium cryogenics.

  10. Optimizing electrostatic field calculations with the adaptive Poisson-Boltzmann Solver to predict electric fields at protein-protein interfaces. I. Sampling and focusing.

    PubMed

    Ritchie, Andrew W; Webb, Lauren J

    2013-10-01

    Continuum electrostatics methods are commonly used to calculate electrostatic potentials in proteins and at protein-protein interfaces to aid many types of biophysical studies. Despite their ubiquity throughout the biophysical literature, these calculations are difficult to test against experimental data to determine their accuracy and validity. To address this, we have calculated the Boltzmann-weighted electrostatic field at the midpoint of a nitrile bond placed at a variety of locations on the surface of the protein RalGDS, both in its monomeric form as well as when docked to four different constructs of the protein Rap, and compared the computation results to vibrational absorption energy measurements of the nitrile oscillator. This was done by generating a statistical ensemble of protein structures using enhanced molecular dynamics sampling with the Amber03 force field, followed by solving the linear Poisson-Boltzmann equation for each structure using the Applied Poisson-Boltzmann Solver (APBS) software package. Using a two-stage focusing strategy, we examined numerous second stage box dimensions, grid point densities, box locations, and compared the numerical result to the result obtained from the sum of the numeric reaction field and the analytic Coulomb field. It was found that the reaction field method yielded higher correlation with experiment for the absolute calculation of fields, while the numeric solutions yielded higher correlation with experiment for the relative field calculations. Finer grid spacing typically improved the calculation, although this effect was less pronounced in the reaction field method. These sorts of calculations were also very sensitive to the box location, particularly for the numeric calculations of absolute fields using a 10(3) Å(3) box. PMID:24041016

  11. Charge Central Interpretation of the Full Nonlinear PB Equation: Implications for Accurate and Scalable Modeling of Solvation Interactions.

    PubMed

    Xiao, Li; Wang, Changhao; Ye, Xiang; Luo, Ray

    2016-08-25

    Continuum solvation modeling based upon the Poisson-Boltzmann equation (PBE) is widely used in structural and functional analysis of biomolecules. In this work, we propose a charge-central interpretation of the full nonlinear PBE electrostatic interactions. The validity of the charge-central view or simply charge view, as formulated as a vacuum Poisson equation with effective charges, was first demonstrated by reproducing both electrostatic potentials and energies from the original solvated full nonlinear PBE. There are at least two benefits when the charge-central framework is applied. First the convergence analyses show that the use of polarization charges allows a much faster converging numerical procedure for electrostatic energy and forces calculation for the full nonlinear PBE. Second, the formulation of the solvated electrostatic interactions as effective charges in vacuum allows scalable algorithms to be deployed for large biomolecular systems. Here, we exploited the charge-view interpretation and developed a particle-particle particle-mesh (P3M) strategy for the full nonlinear PBE systems. We also studied the accuracy and convergence of solvation forces with the charge-view and the P3M methods. It is interesting to note that the convergence of both the charge-view and the P3M methods is more rapid than the original full nonlinear PBE method. Given the developments and validations documented here, we are working to adapt the P3M treatment of the full nonlinear PBE model to molecular dynamics simulations. PMID:27146097

  12. Solving Nonlinear Coupled Differential Equations

    NASA Technical Reports Server (NTRS)

    Mitchell, L.; David, J.

    1986-01-01

    Harmonic balance method developed to obtain approximate steady-state solutions for nonlinear coupled ordinary differential equations. Method usable with transfer matrices commonly used to analyze shaft systems. Solution to nonlinear equation, with periodic forcing function represented as sum of series similar to Fourier series but with form of terms suggested by equation itself.

  13. Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

    NASA Astrophysics Data System (ADS)

    Cooper, Christopher D.; Barba, Lorena A.

    2016-05-01

    Interactions between surfaces and proteins occur in many vital processes and are crucial in biotechnology: the ability to control specific interactions is essential in fields like biomaterials, biomedical implants and biosensors. In the latter case, biosensor sensitivity hinges on ligand proteins adsorbing on bioactive surfaces with a favorable orientation, exposing reaction sites to target molecules. Protein adsorption, being a free-energy-driven process, is difficult to study experimentally. This paper develops and evaluates a computational model to study electrostatic interactions of proteins and charged nanosurfaces, via the Poisson-Boltzmann equation. We extended the implicit-solvent model used in the open-source code PyGBe to include surfaces of imposed charge or potential. This code solves the boundary integral formulation of the Poisson-Boltzmann equation, discretized with surface elements. PyGBe has at its core a treecode-accelerated Krylov iterative solver, resulting in O(N log N) scaling, with further acceleration on hardware via multi-threaded execution on GPUs. It computes solvation and surface free energies, providing a framework for studying the effect of electrostatics on adsorption. We derived an analytical solution for a spherical charged surface interacting with a spherical dielectric cavity, and used it in a grid-convergence study to build evidence on the correctness of our approach. The study showed the error decaying with the average area of the boundary elements, i.e., the method is O(1 / N) , which is consistent with our previous verification studies using PyGBe. We also studied grid-convergence using a real molecular geometry (protein G B1 D4‧), in this case using Richardson extrapolation (in the absence of an analytical solution) and confirmed the O(1 / N) scaling. With this work, we can now access a completely new family of problems, which no other major bioelectrostatics solver, e.g. APBS, is capable of dealing with. PyGBe is open

  14. Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

    NASA Astrophysics Data System (ADS)

    Cooper, Christopher D.; Barba, Lorena A.

    2016-05-01

    Interactions between surfaces and proteins occur in many vital processes and are crucial in biotechnology: the ability to control specific interactions is essential in fields like biomaterials, biomedical implants and biosensors. In the latter case, biosensor sensitivity hinges on ligand proteins adsorbing on bioactive surfaces with a favorable orientation, exposing reaction sites to target molecules. Protein adsorption, being a free-energy-driven process, is difficult to study experimentally. This paper develops and evaluates a computational model to study electrostatic interactions of proteins and charged nanosurfaces, via the Poisson-Boltzmann equation. We extended the implicit-solvent model used in the open-source code PyGBe to include surfaces of imposed charge or potential. This code solves the boundary integral formulation of the Poisson-Boltzmann equation, discretized with surface elements. PyGBe has at its core a treecode-accelerated Krylov iterative solver, resulting in O(N log N) scaling, with further acceleration on hardware via multi-threaded execution on GPUs. It computes solvation and surface free energies, providing a framework for studying the effect of electrostatics on adsorption. We derived an analytical solution for a spherical charged surface interacting with a spherical dielectric cavity, and used it in a grid-convergence study to build evidence on the correctness of our approach. The study showed the error decaying with the average area of the boundary elements, i.e., the method is O(1 / N) , which is consistent with our previous verification studies using PyGBe. We also studied grid-convergence using a real molecular geometry (protein G B1 D4‧), in this case using Richardson extrapolation (in the absence of an analytical solution) and confirmed the O(1 / N) scaling. With this work, we can now access a completely new family of problems, which no other major bioelectrostatics solver, e.g. APBS, is capable of dealing with. PyGBe is open

  15. Solitons and nonlinear wave equations

    SciTech Connect

    Dodd, Roger K.; Eilbeck, J. Chris; Gibbon, John D.; Morris, Hedley C.

    1982-01-01

    A discussion of the theory and applications of classical solitons is presented with a brief treatment of quantum mechanical effects which occur in particle physics and quantum field theory. The subjects addressed include: solitary waves and solitons, scattering transforms, the Schroedinger equation and the Korteweg-de Vries equation, and the inverse method for the isospectral Schroedinger equation and the general solution of the solvable nonlinear equations. Also considered are: isolation of the Korteweg-de Vries equation in some physical examples, the Zakharov-Shabat/AKNS inverse method, kinks and the sine-Gordon equation, the nonlinear Schroedinger equation and wave resonance interactions, amplitude equations in unstable systems, and numerical studies of solitons. 45 references.

  16. Optimizing electrostatic field calculations with the Adaptive Poisson-Boltzmann Solver to predict electric fields at protein-protein interfaces II: explicit near-probe and hydrogen-bonding water molecules.

    PubMed

    Ritchie, Andrew W; Webb, Lauren J

    2014-07-17

    We have examined the effects of including explicit, near-probe solvent molecules in a continuum electrostatics strategy using the linear Poisson-Boltzmann equation with the Adaptive Poisson-Boltzmann Solver (APBS) to calculate electric fields at the midpoint of a nitrile bond both at the surface of a monomeric protein and when docked at a protein-protein interface. Results were compared to experimental vibrational absorption energy measurements of the nitrile oscillator. We examined three methods for selecting explicit water molecules: (1) all water molecules within 5 Å of the nitrile nitrogen; (2) the water molecule closest to the nitrile nitrogen; and (3) any single water molecule hydrogen-bonding to the nitrile. The correlation between absolute field strengths with experimental absorption energies were calculated and it was observed that method 1 was only an improvement for the monomer calculations, while methods 2 and 3 were not significantly different from the purely implicit solvent calculations for all protein systems examined. Upon taking the difference in calculated electrostatic fields and comparing to the difference in absorption frequencies, we typically observed an increase in experimental correlation for all methods, with method 1 showing the largest gain, likely due to the improved absolute monomer correlations using that method. These results suggest that, unlike with quantum mechanical methods, when calculating absolute fields using entirely classical models, implicit solvent is typically sufficient and additional work to identify hydrogen-bonding or nearest waters does not significantly impact the results. Although we observed that a sphere of solvent near the field of interest improved results for relative field calculations, it should not be consider a panacea for all situations. PMID:24446740

  17. Duffing's Equation and Nonlinear Resonance

    ERIC Educational Resources Information Center

    Fay, Temple H.

    2003-01-01

    The phenomenon of nonlinear resonance (sometimes called the "jump phenomenon") is examined and second-order van der Pol plane analysis is employed to indicate that this phenomenon is not a feature of the equation, but rather the result of accumulated round-off error, truncation error and algorithm error that distorts the true bounded solution onto…

  18. Between algorithm and model: different Molecular Surface definitions for the Poisson-Boltzmann based electrostatic characterization of biomolecules in solution.

    PubMed

    Decherchi, Sergio; Colmenares, José; Catalano, Chiara Eva; Spagnuolo, Michela; Alexov, Emil; Rocchia, Walter

    2013-01-01

    The definition of a molecular surface which is physically sound and computationally efficient is a very interesting and long standing problem in the implicit solvent continuum modeling of biomolecular systems as well as in the molecular graphics field. In this work, two molecular surfaces are evaluated with respect to their suitability for electrostatic computation as alternatives to the widely used Connolly-Richards surface: the blobby surface, an implicit Gaussian atom centered surface, and the skin surface. As figures of merit, we considered surface differentiability and surface area continuity with respect to atom positions, and the agreement with explicit solvent simulations. Geometric analysis seems to privilege the skin to the blobby surface, and points to an unexpected relationship between the non connectedness of the surface, caused by interstices in the solute volume, and the surface area dependence on atomic centers. In order to assess the ability to reproduce explicit solvent results, specific software tools have been developed to enable the use of the skin surface in Poisson-Boltzmann calculations with the DelPhi solver. Results indicate that the skin and Connolly surfaces have a comparable performance from this last point of view. PMID:23519863

  19. Linear superposition in nonlinear equations.

    PubMed

    Khare, Avinash; Sukhatme, Uday

    2002-06-17

    Several nonlinear systems such as the Korteweg-de Vries (KdV) and modified KdV equations and lambda phi(4) theory possess periodic traveling wave solutions involving Jacobi elliptic functions. We show that suitable linear combinations of these known periodic solutions yield many additional solutions with different periods and velocities. This linear superposition procedure works by virtue of some remarkable new identities involving elliptic functions. PMID:12059300

  20. Nonlinear SCHRÖDINGER-PAULI Equations

    NASA Astrophysics Data System (ADS)

    Ng, Wei Khim; Parwani, Rajesh R.

    2011-11-01

    We obtain novel nonlinear Schrüdinger-Pauli equations through a formal non-relativistic limit of appropriately constructed nonlinear Dirac equations. This procedure automatically provides a physical regularisation of potential singularities brought forward by the nonlinear terms and suggests how to regularise previous equations studied in the literature. The enhancement of contributions coming from the regularised singularities suggests that the obtained equations might be useful for future precision tests of quantum nonlinearity.

  1. A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics

    NASA Astrophysics Data System (ADS)

    Sun, Hui; Wen, Jiayi; Zhao, Yanxiang; Li, Bo; McCammon, J. Andrew

    2015-12-01

    Dielectric boundary based implicit-solvent models provide efficient descriptions of coarse-grained effects, particularly the electrostatic effect, of aqueous solvent. Recent years have seen the initial success of a new such model, variational implicit-solvent model (VISM) [Dzubiella, Swanson, and McCammon Phys. Rev. Lett. 96, 087802 (2006) and J. Chem. Phys. 124, 084905 (2006)], in capturing multiple dry and wet hydration states, describing the subtle electrostatic effect in hydrophobic interactions, and providing qualitatively good estimates of solvation free energies. Here, we develop a phase-field VISM to the solvation of charged molecules in aqueous solvent to include more flexibility. In this approach, a stable equilibrium molecular system is described by a phase field that takes one constant value in the solute region and a different constant value in the solvent region, and smoothly changes its value on a thin transition layer representing a smeared solute-solvent interface or dielectric boundary. Such a phase field minimizes an effective solvation free-energy functional that consists of the solute-solvent interfacial energy, solute-solvent van der Waals interaction energy, and electrostatic free energy described by the Poisson-Boltzmann theory. We apply our model and methods to the solvation of single ions, two parallel plates, and protein complexes BphC and p53/MDM2 to demonstrate the capability and efficiency of our approach at different levels. With a diffuse dielectric boundary, our new approach can describe the dielectric asymmetry in the solute-solvent interfacial region. Our theory is developed based on rigorous mathematical studies and is also connected to the Lum-Chandler-Weeks theory (1999). We discuss these connections and possible extensions of our theory and methods.

  2. A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.

    PubMed

    Sun, Hui; Wen, Jiayi; Zhao, Yanxiang; Li, Bo; McCammon, J Andrew

    2015-12-28

    Dielectric boundary based implicit-solvent models provide efficient descriptions of coarse-grained effects, particularly the electrostatic effect, of aqueous solvent. Recent years have seen the initial success of a new such model, variational implicit-solvent model (VISM) [Dzubiella, Swanson, and McCammon Phys. Rev. Lett. 96, 087802 (2006) and J. Chem. Phys. 124, 084905 (2006)], in capturing multiple dry and wet hydration states, describing the subtle electrostatic effect in hydrophobic interactions, and providing qualitatively good estimates of solvation free energies. Here, we develop a phase-field VISM to the solvation of charged molecules in aqueous solvent to include more flexibility. In this approach, a stable equilibrium molecular system is described by a phase field that takes one constant value in the solute region and a different constant value in the solvent region, and smoothly changes its value on a thin transition layer representing a smeared solute-solvent interface or dielectric boundary. Such a phase field minimizes an effective solvation free-energy functional that consists of the solute-solvent interfacial energy, solute-solvent van der Waals interaction energy, and electrostatic free energy described by the Poisson-Boltzmann theory. We apply our model and methods to the solvation of single ions, two parallel plates, and protein complexes BphC and p53/MDM2 to demonstrate the capability and efficiency of our approach at different levels. With a diffuse dielectric boundary, our new approach can describe the dielectric asymmetry in the solute-solvent interfacial region. Our theory is developed based on rigorous mathematical studies and is also connected to the Lum-Chandler-Weeks theory (1999). We discuss these connections and possible extensions of our theory and methods. PMID:26723595

  3. Engineering integrable nonautonomous nonlinear Schroedinger equations

    SciTech Connect

    He Xugang; Zhao Dun; Li Lin; Luo Honggang

    2009-05-15

    We investigate Painleve integrability of a generalized nonautonomous one-dimensional nonlinear Schroedinger (NLS) equation with time- and space-dependent dispersion, nonlinearity, and external potentials. Through the Painleve analysis some explicit requirements on the dispersion, nonlinearity, dissipation/gain, and the external potential as well as the constraint conditions are identified. It provides an explicit way to engineer integrable nonautonomous NLS equations at least in the sense of Painleve integrability. Furthermore analytical solutions of this class of integrable nonautonomous NLS equations can be obtained explicitly from the solutions of the standard NLS equation by a general transformation. The result provides a significant way to control coherently the soliton dynamics in the corresponding nonlinear systems, as that in Bose-Einstein condensate experiments. We analyze explicitly the soliton dynamics under the nonlinearity management and the external potentials and discuss its application in the matter-wave dynamics. Some comparisons with the previous works have also been discussed.

  4. A differential equation for the Generalized Born radii.

    PubMed

    Fogolari, Federico; Corazza, Alessandra; Esposito, Gennaro

    2013-06-28

    The Generalized Born (GB) model offers a convenient way of representing electrostatics in complex macromolecules like proteins or nucleic acids. The computation of atomic GB radii is currently performed by different non-local approaches involving volume or surface integrals. Here we obtain a non-linear second-order partial differential equation for the Generalized Born radius, which may be solved using local iterative algorithms. The equation is derived under the assumption that the usual GB approximation to the reaction field obeys Laplace's equation. The equation admits as particular solutions the correct GB radii for the sphere and the plane. The tests performed on a set of 55 different proteins show an overall agreement with other reference GB models and "perfect" Poisson-Boltzmann based values. PMID:23676843

  5. Spurious Solutions Of Nonlinear Differential Equations

    NASA Technical Reports Server (NTRS)

    Yee, H. C.; Sweby, P. K.; Griffiths, D. F.

    1992-01-01

    Report utilizes nonlinear-dynamics approach to investigate possible sources of errors and slow convergence and non-convergence of steady-state numerical solutions when using time-dependent approach for problems containing nonlinear source terms. Emphasizes implications for development of algorithms in CFD and computational sciences in general. Main fundamental conclusion of study is that qualitative features of nonlinear differential equations cannot be adequately represented by finite-difference method and vice versa.

  6. Nonlinear quantum equations: Classical field theory

    SciTech Connect

    Rego-Monteiro, M. A.; Nobre, F. D.

    2013-10-15

    An exact classical field theory for nonlinear quantum equations is presented herein. It has been applied recently to a nonlinear Schrödinger equation, and it is shown herein to hold also for a nonlinear generalization of the Klein-Gordon equation. These generalizations were carried by introducing nonlinear terms, characterized by exponents depending on an index q, in such a way that the standard, linear equations, are recovered in the limit q→ 1. The main characteristic of this field theory consists on the fact that besides the usual Ψ(x(vector sign),t), a new field Φ(x(vector sign),t) needs to be introduced in the Lagrangian, as well. The field Φ(x(vector sign),t), which is defined by means of an additional equation, becomes Ψ{sup *}(x(vector sign),t) only when q→ 1. The solutions for the fields Ψ(x(vector sign),t) and Φ(x(vector sign),t) are found herein, being expressed in terms of a q-plane wave; moreover, both field equations lead to the relation E{sup 2}=p{sup 2}c{sup 2}+m{sup 2}c{sup 4}, for all values of q. The fact that such a classical field theory works well for two very distinct nonlinear quantum equations, namely, the Schrödinger and Klein-Gordon ones, suggests that this procedure should be appropriate for a wider class nonlinear equations. It is shown that the standard global gauge invariance is broken as a consequence of the nonlinearity.

  7. Extended Trial Equation Method for Nonlinear Partial Differential Equations

    NASA Astrophysics Data System (ADS)

    Gepreel, Khaled A.; Nofal, Taher A.

    2015-04-01

    The main objective of this paper is to use the extended trial equation method to construct a series of some new solutions for some nonlinear partial differential equations (PDEs) in mathematical physics. We will construct the solutions in many different functions such as hyperbolic function solutions, trigonometric function solutions, Jacobi elliptic function solutions, and rational functional solutions for the nonlinear PDEs when the balance number is a real number via the Zhiber-Shabat nonlinear differential equation. The balance number of this method is not constant as we shown in other methods, but it is changed by changing the trial equation derivative definition. This method allowed us to construct many new types of solutions. It is shown by using the Maple software package that all obtained solutions satisfy the original PDEs.

  8. Markovian master equation for nonlinear systems

    NASA Astrophysics Data System (ADS)

    de los Santos-Sánchez, O.; Récamier, J.; Jáuregui, R.

    2015-06-01

    Within the f-deformed oscillator formalism, we derive a Markovian master equation for the description of the damped dynamics of nonlinear systems that interact with their environment. The applicability of this treatment to the particular case of a Morse-like oscillator interacting with a thermal field is illustrated, and the decay of quantum coherence in such a system is analyzed in terms of the evolution on phase space of its nonlinear coherent states via the Wigner function.

  9. Algorithms For Integrating Nonlinear Differential Equations

    NASA Technical Reports Server (NTRS)

    Freed, A. D.; Walker, K. P.

    1994-01-01

    Improved algorithms developed for use in numerical integration of systems of nonhomogenous, nonlinear, first-order, ordinary differential equations. In comparison with integration algorithms, these algorithms offer greater stability and accuracy. Several asymptotically correct, thereby enabling retention of stability and accuracy when large increments of independent variable used. Accuracies attainable demonstrated by applying them to systems of nonlinear, first-order, differential equations that arise in study of viscoplastic behavior, spread of acquired immune-deficiency syndrome (AIDS) virus and predator/prey populations.

  10. Quantum nonlinear Schrodinger equation on a lattice

    SciTech Connect

    Bogolyubov, N.M.; Korepin, V.E.

    1986-09-01

    A local Hamiltonian is constructed for the nonlinear Schrodinger equation on a lattice in both the classical and the quantum variants. This Hamiltonian is an explicit elementary function of the local Bose fields. The lattice model possesses the same structure of the action-angle variables as the continuous model.

  11. The non-linear MSW equation

    NASA Astrophysics Data System (ADS)

    Thomson, Mark J.; McKellar, Bruce H. J.

    1991-04-01

    A simple, non-linear generalization of the MSW equation is presented and its analytic solution is outlined. The orbits of the polarization vector are shown to be periodic, and to lie on a sphere. Their non-trivial flow patterns fall into two topological categories, the more complex of which can become chaotic if perturbed.

  12. Solitary waves in the nonlinear Dirac equation with arbitrary nonlinearity.

    PubMed

    Cooper, Fred; Khare, Avinash; Mihaila, Bogdan; Saxena, Avadh

    2010-09-01

    We consider the nonlinear Dirac equations (NLDE's) in 1+1 dimension with scalar-scalar self interaction g{2}/k+1(ΨΨ){k+1} , as well as a vector-vector self interaction g{2}/k+1(Ψγ{μ}ΨΨγ{μ}Ψ){1/2(k+1)} . We find the exact analytic form for solitary waves for arbitrary k and find that they are a generalization of the exact solutions for the nonlinear Schrödinger equation (NLSE) and reduce to these solutions in a well defined nonrelativistic limit. We perform the nonrelativistic reduction and find the 1/2m correction to the NLSE, valid when |ω-m|<2m , where ω is the frequency of the solitary wave in the rest frame. We discuss the stability and blowup of solitary waves assuming the modified NLSE is valid and find that they should be stable for k<2 . PMID:21230200

  13. Taming the nonlinearity of the Einstein equation.

    PubMed

    Harte, Abraham I

    2014-12-31

    Many of the technical complications associated with the general theory of relativity ultimately stem from the nonlinearity of Einstein's equation. It is shown here that an appropriate choice of dynamical variables may be used to eliminate all such nonlinearities beyond a particular order: Both Landau-Lifshitz and tetrad formulations of Einstein's equation are obtained that involve only finite products of the unknowns and their derivatives. Considerable additional simplifications arise in physically interesting cases where metrics become approximately Kerr or, e.g., plane waves, suggesting that the variables described here can be used to efficiently reformulate perturbation theory in a variety of contexts. In all cases, these variables are shown to have simple geometrical interpretations that directly relate the local causal structure associated with the metric of interest to the causal structure associated with a prescribed background. A new method to search for exact solutions is outlined as well. PMID:25615299

  14. Explicit integration of Friedmann's equation with nonlinear equations of state

    NASA Astrophysics Data System (ADS)

    Chen, Shouxin; Gibbons, Gary W.; Yang, Yisong

    2015-05-01

    In this paper we study the integrability of the Friedmann equations, when the equation of state for the perfect-fluid universe is nonlinear, in the light of the Chebyshev theorem. A series of important, yet not previously touched, problems will be worked out which include the generalized Chaplygin gas, two-term energy density, trinomial Friedmann, Born-Infeld, two-fluid models, and Chern-Simons modified gravity theory models. With the explicit integration, we are able to understand exactly the roles of the physical parameters in various models play in the cosmological evolution which may also offer clues to a profound understanding of the problems in general settings. For example, in the Chaplygin gas universe, a few integrable cases lead us to derive a universal formula for the asymptotic exponential growth rate of the scale factor, of an explicit form, whether the Friedmann equation is integrable or not, which reveals the coupled roles played by various physical sectors and it is seen that, as far as there is a tiny presence of nonlinear matter, conventional linear matter makes contribution to the dark matter, which becomes significant near the phantom divide line. The Friedmann equations also arise in areas of physics not directly related to cosmology. We provide some examples ranging from geometric optics and central orbits to soap films and the shape of glaciated valleys to which our results may be applied.

  15. Solving Nonlinear Euler Equations with Arbitrary Accuracy

    NASA Technical Reports Server (NTRS)

    Dyson, Rodger W.

    2005-01-01

    A computer program that efficiently solves the time-dependent, nonlinear Euler equations in two dimensions to an arbitrarily high order of accuracy has been developed. The program implements a modified form of a prior arbitrary- accuracy simulation algorithm that is a member of the class of algorithms known in the art as modified expansion solution approximation (MESA) schemes. Whereas millions of lines of code were needed to implement the prior MESA algorithm, it is possible to implement the present MESA algorithm by use of one or a few pages of Fortran code, the exact amount depending on the specific application. The ability to solve the Euler equations to arbitrarily high accuracy is especially beneficial in simulations of aeroacoustic effects in settings in which fully nonlinear behavior is expected - for example, at stagnation points of fan blades, where linearizing assumptions break down. At these locations, it is necessary to solve the full nonlinear Euler equations, and inasmuch as the acoustical energy is of the order of 4 to 5 orders of magnitude below that of the mean flow, it is necessary to achieve an overall fractional error of less than 10-6 in order to faithfully simulate entropy, vortical, and acoustical waves.

  16. Forces Associated with Nonlinear Nonholonomic Constraint Equations

    NASA Technical Reports Server (NTRS)

    Roithmayr, Carlos M.; Hodges, Dewey H.

    2010-01-01

    A concise method has been formulated for identifying a set of forces needed to constrain the behavior of a mechanical system, modeled as a set of particles and rigid bodies, when it is subject to motion constraints described by nonholonomic equations that are inherently nonlinear in velocity. An expression in vector form is obtained for each force; a direction is determined, together with the point of application. This result is a consequence of expressing constraint equations in terms of dot products of vectors rather than in the usual way, which is entirely in terms of scalars and matrices. The constraint forces in vector form are used together with two new analytical approaches for deriving equations governing motion of a system subject to such constraints. If constraint forces are of interest they can be brought into evidence in explicit dynamical equations by employing the well-known nonholonomic partial velocities associated with Kane's method; if they are not of interest, equations can be formed instead with the aid of vectors introduced here as nonholonomic partial accelerations. When the analyst requires only the latter, smaller set of equations, they can be formed directly; it is not necessary to expend the labor to form the former, larger set first and subsequently perform matrix multiplications.

  17. Dark soliton solutions of (N+1)-dimensional nonlinear evolution equations

    NASA Astrophysics Data System (ADS)

    Demiray, Seyma Tuluce; Bulut, Hasan

    2016-06-01

    In this study, we investigate exact solutions of (N+1)-dimensional double sinh-Gordon equation and (N+1)-dimensional generalized Boussinesq equation by using generalized Kudryashov method. (N+1)-dimensional double sinh-Gordon equation and (N+1)-dimensional generalized Boussinesq equation can be returned to nonlinear ordinary differential equation by suitable transformation. Then, generalized Kudryashov method has been used to seek exact solutions of the (N+1)-dimensional double sinh-Gordon equation and (N+1)-dimensional generalized Boussinesq equation. Also, we obtain dark soliton solutions for these (N+1)-dimensional nonlinear evolution equations. Finally, we denote that this method can be applied to solve other nonlinear evolution equations.

  18. Using the scalable nonlinear equations solvers package

    SciTech Connect

    Gropp, W.D.; McInnes, L.C.; Smith, B.F.

    1995-02-01

    SNES (Scalable Nonlinear Equations Solvers) is a software package for the numerical solution of large-scale systems of nonlinear equations on both uniprocessors and parallel architectures. SNES also contains a component for the solution of unconstrained minimization problems, called SUMS (Scalable Unconstrained Minimization Solvers). Newton-like methods, which are known for their efficiency and robustness, constitute the core of the package. As part of the multilevel PETSc library, SNES incorporates many features and options from other parts of PETSc. In keeping with the spirit of the PETSc library, the nonlinear solution routines are data-structure-neutral, making them flexible and easily extensible. This users guide contains a detailed description of uniprocessor usage of SNES, with some added comments regarding multiprocessor usage. At this time the parallel version is undergoing refinement and extension, as we work toward a common interface for the uniprocessor and parallel cases. Thus, forthcoming versions of the software will contain additional features, and changes to parallel interface may result at any time. The new parallel version will employ the MPI (Message Passing Interface) standard for interprocessor communication. Since most of these details will be hidden, users will need to perform only minimal message-passing programming.

  19. The beam equation with nonlinear memory

    NASA Astrophysics Data System (ADS)

    D'Abbicco, Marcello; Lucente, Sandra

    2016-06-01

    In this paper, we study the critical exponent for the beam equation with nonlinear memory, i.e., {u_{tt}+Δ^2u = F(t, u)}, where F = intlimits0tf(t - s)N(u)(s, x) {d}s, quad N(u)≈ |u|^p. For suitable f and p, we prove the existence of local-in-time solutions and small data global solutions to the Cauchy problem, in homogeneous and nonhomogeneous Sobolev spaces. In some cases, we prove that the local solution cannot be extended to a global one. We also consider the limit case of power nonlinearity, i.e., {F = N(u)}.

  20. Exact and explicit solitary wave solutions to some nonlinear equations

    SciTech Connect

    Jiefang Zhang

    1996-08-01

    Exact and explicit solitary wave solutions are obtained for some physically interesting nonlinear evolutions and wave equations in physics and other fields by using a special transformation. These equations include the KdV-Burgers equation, the MKdV-Burgers equation, the combined KdV-MKdV equation, the Newell-Whitehead equation, the dissipative {Phi}{sup 4}-model equation, the generalized Fisher equation, and the elastic-medium wave equation.

  1. FAST TRACK COMMUNICATION Quasi self-adjoint nonlinear wave equations

    NASA Astrophysics Data System (ADS)

    Ibragimov, N. H.; Torrisi, M.; Tracinà, R.

    2010-11-01

    In this paper we generalize the classification of self-adjoint second-order linear partial differential equation to a family of nonlinear wave equations with two independent variables. We find a class of quasi self-adjoint nonlinear equations which includes the self-adjoint linear equations as a particular case. The property of a differential equation to be quasi self-adjoint is important, e.g. for constructing conservation laws associated with symmetries of the differential equation.

  2. Solution spectrum of nonlinear diffusion equations

    SciTech Connect

    Ulmer, W.

    1992-08-01

    The stationary version of the nonlinear diffusion equation -{partial_derivative}c/{partial_derivative}t+D{Delta}c=A{sub 1}c-A{sub 2}c{sup 2} can be solved with the ansatz c={summation}{sub p=1}{sup {infinity}} A{sub p}(cosh kx){sup -p}, inducing a band structure with regard to the ratio {lambda}{sub 1}/{lambda}{sub 2}. The resulting solution manifold can be related to an equilibrium of fluxes of nonequilibrium thermodynamics. The modification of this ansatz yielding the expansion c={summation}{sub p,q=1}{sup infinity}A{sub pa}(cosh kx){sup -p}[(cosh {alpha}t){sup -q-1} sinh {alpha}t+b(cosh {alpha}t){sup -q}] represents a solution spectrum of the time-dependent nonlinear equations, and the stationary version can be found from the asymptotic behaviour of the expansion. The solutions can be associated with reactive processes such as active transport phenomena and control circuit problems is discussed. There are also applications to cellular kinetics of clonogenic cell assays and spheriods. 33 refs., 1 tab.

  3. Nonlinear scattering term in the gyrokinetic Vlasov equation

    SciTech Connect

    Wang, Shaojie

    2013-08-15

    Nonlinear scattering term is found from the nonlinear gyrokinetic equation by decoupling the perturbed gyrocenter motion from the unperturbed motion. The gyro-center distribution function is determined by the well-understood unperturbed motion, with the effects of fields perturbation included in the nonlinear scattering term, which explicitly reveals the nonlinear stochastic dissipation on the time scale longer than the wave correlation time.

  4. Asymptotic behaviour of the Boltzmann equation as a cosmological model

    NASA Astrophysics Data System (ADS)

    Lee, Ho

    2016-08-01

    As a Newtonian cosmological model the Vlasov-Poisson-Boltzmann system is considered, and a slightly modified Boltzmann equation, which describes the stability of an expanding universe, is derived. Asymptotic behaviour of solutions turns out to depend on the expansion of the universe, and in this paper we consider the soft potential case and will obtain asymptotic behaviour.

  5. Role of non-ideality for the ion transport in porous media: Derivation of the macroscopic equations using upscaling

    NASA Astrophysics Data System (ADS)

    Allaire, Grégoire; Brizzi, Robert; Dufrêche, Jean-François; Mikelić, Andro; Piatnitski, Andrey

    2014-07-01

    This paper is devoted to the homogenization (or upscaling) of a system of partial differential equations describing the non-ideal transport of a N-component electrolyte in a dilute Newtonian solvent through a rigid porous medium. Realistic non-ideal effects are taken into account by an approach based on the mean spherical approximation (MSA) model which takes into account finite size ions and screening effects. We first consider equilibrium solutions in the absence of external forces. In such a case, the velocity and diffusive fluxes vanish and the equilibrium electrostatic potential is the solution of a variant of the Poisson-Boltzmann equation coupled with algebraic equations. Contrary to the ideal case, this nonlinear equation has no monotone structure. However, based on invariant region estimates for the Poisson-Boltzmann equation and for small characteristic value of the solute packing fraction, we prove existence of at least one solution. To our knowledge this existence result is new at this level of generality. When the motion is governed by a small static electric field and a small hydrodynamic force, we generalize O'Brien's argument to deduce a linearized model. Our second main result is the rigorous homogenization of these linearized equations and the proof that the effective tensor satisfies Onsager properties, namely is symmetric positive definite. We eventually make numerical comparisons with the ideal case. Our numerical results show that the MSA model confirms qualitatively the conclusions obtained using the ideal model but there are quantitative differences arising that can be important at high charge or high concentrations.

  6. Complex PT-symmetric nonlinear Schrödinger equation and Burgers equation.

    PubMed

    Yan, Zhenya

    2013-04-28

    The complex -symmetric nonlinear wave models have drawn much attention in recent years since the complex -symmetric extensions of the Korteweg-de Vries (KdV) equation were presented in 2007. In this review, we focus on the study of the complex -symmetric nonlinear Schrödinger equation and Burgers equation. First of all, we briefly introduce the basic property of complex symmetry. We then report on exact solutions of one- and two-dimensional nonlinear Schrödinger equations (known as the Gross-Pitaevskii equation in Bose-Einstein condensates) with several complex -symmetric potentials. Finally, some complex -symmetric extension principles are used to generate some complex -symmetric nonlinear wave equations starting from both -symmetric (e.g. the KdV equation) and non- -symmetric (e.g. the Burgers equation) nonlinear wave equations. In particular, we discuss exact solutions of some representative ones of the complex -symmetric Burgers equation in detail. PMID:23509385

  7. Forced nonlinear Schrödinger equation with arbitrary nonlinearity

    NASA Astrophysics Data System (ADS)

    Cooper, Fred; Khare, Avinash; Quintero, Niurka R.; Mertens, Franz G.; Saxena, Avadh

    2012-04-01

    We consider the nonlinear Schrödinger equation (NLSE) in 1+1 dimension with scalar-scalar self-interaction (g2)/(κ+1)(ψψ)κ+1 in the presence of the external forcing terms of the form re-i(kx+θ)-δψ. We find new exact solutions for this problem and show that the solitary wave momentum is conserved in a moving frame where vk=2k. These new exact solutions reduce to the constant phase solutions of the unforced problem when r→0. In particular we study the behavior of solitary wave solutions in the presence of these external forces in a variational approximation which allows the position, momentum, width, and phase of these waves to vary in time. We show that the stationary solutions of the variational equations include a solution close to the exact one and we study small oscillations around all the stationary solutions. We postulate that the dynamical condition for instability is that dp(t)/dq˙(t)<0, where p(t) is the normalized canonical momentum p(t)=(1)/(M(t))(∂L)/(∂q˙), and q˙(t) is the solitary wave velocity. Here M(t)=∫dxψ(x,t)ψ(x,t). Stability is also studied using a “phase portrait” of the soliton, where its dynamics is represented by two-dimensional projections of its trajectory in the four-dimensional space of collective coordinates. The criterion for stability of a soliton is that its trajectory is a closed single curve with a positive sense of rotation around a fixed point. We investigate the accuracy of our variational approximation and these criteria using numerical simulations of the NLSE. We find that our criteria work quite well when the magnitude of the forcing term is small compared to the amplitude of the unforced solitary wave. In this regime the variational approximation captures quite well the behavior of the solitary wave.

  8. Capillary waves in the subcritical nonlinear Schroedinger equation

    SciTech Connect

    Kozyreff, G.

    2010-01-15

    We expand recent results on the nonlinear Schroedinger equation with cubic-quintic nonlinearity to show that some solutions are described by the Bernoulli equation in the presence of surface tension. As a consequence, capillary waves are predicted and found numerically at the interface between regions of large and low amplitude.

  9. Forced nonlinear Schrödinger equation with arbitrary nonlinearity.

    PubMed

    Cooper, Fred; Khare, Avinash; Quintero, Niurka R; Mertens, Franz G; Saxena, Avadh

    2012-04-01

    We consider the nonlinear Schrödinger equation (NLSE) in 1+1 dimension with scalar-scalar self-interaction g(2)/κ+1(ψ*ψ)(κ+1) in the presence of the external forcing terms of the form re(-i(kx+θ))-δψ. We find new exact solutions for this problem and show that the solitary wave momentum is conserved in a moving frame where v(k)=2k. These new exact solutions reduce to the constant phase solutions of the unforced problem when r→0. In particular we study the behavior of solitary wave solutions in the presence of these external forces in a variational approximation which allows the position, momentum, width, and phase of these waves to vary in time. We show that the stationary solutions of the variational equations include a solution close to the exact one and we study small oscillations around all the stationary solutions. We postulate that the dynamical condition for instability is that dp(t)/dq ̇(t)<0, where p(t) is the normalized canonical momentum p(t)=1/M(t)∂L/∂q ̇, and q ̇(t) is the solitary wave velocity. Here M(t)=∫dxψ*(x,t)ψ(x,t). Stability is also studied using a "phase portrait" of the soliton, where its dynamics is represented by two-dimensional projections of its trajectory in the four-dimensional space of collective coordinates. The criterion for stability of a soliton is that its trajectory is a closed single curve with a positive sense of rotation around a fixed point. We investigate the accuracy of our variational approximation and these criteria using numerical simulations of the NLSE. We find that our criteria work quite well when the magnitude of the forcing term is small compared to the amplitude of the unforced solitary wave. In this regime the variational approximation captures quite well the behavior of the solitary wave. PMID:22680598

  10. Exact Travelling Wave Solutions of the Nonlinear Evolution Equations by Auxiliary Equation Method

    NASA Astrophysics Data System (ADS)

    Kaplan, Melike; Akbulut, Arzu; Bekir, Ahmet

    2015-10-01

    The auxiliary equation method presents wide applicability to handling nonlinear wave equations. In this article, we establish new exact travelling wave solutions of the nonlinear Zoomeron equation, coupled Higgs equation, and equal width wave equation. The travelling wave solutions are expressed by the hyperbolic functions, trigonometric functions, and rational functions. It is shown that the proposed method provides a powerful mathematical tool for solving nonlinear wave equations in mathematical physics and engineering. Throughout the article, all calculations are made with the aid of the Maple packet program.

  11. Exact traveling wave solutions for system of nonlinear evolution equations.

    PubMed

    Khan, Kamruzzaman; Akbar, M Ali; Arnous, Ahmed H

    2016-01-01

    In this work, recently deduced generalized Kudryashov method is applied to the variant Boussinesq equations, and the (2 + 1)-dimensional breaking soliton equations. As a result a range of qualitative explicit exact traveling wave solutions are deduced for these equations, which motivates us to develop, in the near future, a new approach to obtain unsteady solutions of autonomous nonlinear evolution equations those arise in mathematical physics and engineering fields. It is uncomplicated to extend this method to higher-order nonlinear evolution equations in mathematical physics. And it should be possible to apply the same method to nonlinear evolution equations having more general forms of nonlinearities by utilizing the traveling wave hypothesis. PMID:27347461

  12. Stochastic differential equations for non-linear hydrodynamics

    NASA Astrophysics Data System (ADS)

    Español, Pep

    1998-02-01

    We formulate the stochastic differential equations for non-linear hydrodynamic fluctuations. The equations incorporate the random forces through a random stres tensor and random heat flux as in the Landau and Lifshitz theory. However, the equations are non-linear and the random forces are non-Gaussian. We provide explicit expressions for these random quantities in terms of the well-defined increments of the Wienner process.

  13. Collocation Method for Numerical Solution of Coupled Nonlinear Schroedinger Equation

    SciTech Connect

    Ismail, M. S.

    2010-09-30

    The coupled nonlinear Schroedinger equation models several interesting physical phenomena presents a model equation for optical fiber with linear birefringence. In this paper we use collocation method to solve this equation, we test this method for stability and accuracy. Numerical tests using single soliton and interaction of three solitons are used to test the resulting scheme.

  14. Analytic solutions of a general nonlinear functional equations near resonance

    NASA Astrophysics Data System (ADS)

    Xu, Bing; Zhang, Weinian

    2006-05-01

    Existence of analytic solutions of a general class of nonlinear functional equations is discussed. This general class includes some specific functional equations studied recently. Moreover, we can generalize this problem to finding analytic solutions of a general class of iterative equations.

  15. The zero dispersion limits of nonlinear wave equations

    SciTech Connect

    Tso, T.

    1992-01-01

    In chapter 2 the author uses functional analytic methods and conservation laws to solve the initial-value problem for the Korteweg-de Vries equation, the Benjamin-Bona-Mahony equation, and the nonlinear Schroedinger equation for initial data that satisfy some suitable conditions. In chapter 3 the energy estimates are used to show that the strong convergence of the family of the solutions of the KdV equation obtained in chapter 2 in H[sup 3](R) as [epsilon] [yields] 0; also, it is shown that the strong L[sup 2](R)-limit of the solutions of the BBM equation as [epsilon] [yields] 0 before a critical time. In chapter 4 the author uses the Whitham modulation theory and averaging method to find the 2[pi]-periodic solutions and the modulation equations of the KdV equation, the BBM equation, the Klein-Gordon equation, the NLS equation, the mKdV equation, and the P-system. It is shown that the modulation equations of the KdV equation, the K-G equation, the NLS equation, and the mKdV equation are hyperbolic but those of the BBM equation and the P-system are not hyperbolic. Also, the relations are studied of the KdV equation and the mKdV equation. Finally, the author studies the complex mKdV equation to compare with the NLS equation, and then study the complex gKdV equation.

  16. NA Nonlinear Equation-of-state Inversion

    NASA Astrophysics Data System (ADS)

    Jackson, I.; Kennett, B. L.

    2008-12-01

    A fully non-linear inversion scheme is introduced for the determination of the parameters controlling the equation-of-state and elasticity of mineral phases using the thermodynamically consistent finite-strain formulation introduced by Stixrude & Lithgow-Bertelloni (2005). This inversion exploits a directed search in an eight-dimensional parameter space using the Neighbourhood Algorithm (NA) of Sambridge (1999) to search for the minimum of an objective function representing the misfit to multiple data sets that constrain different aspects of the mineral behaviour. No derivatives are employed and the progress towards the minimum builds on the accumulated information on the character of the parameter space acquired as the inversion progresses. When only a limited range of experimental information is available there is a strong possibility of multiple minima in the objective function, which can pose problems for conventional iterative least-squares or other gradient methods. The addition of many different styles of data tends to produce a better defined minimum. The influence of different data types can be readily assessed by allowing differential weighting. The new procedure is illustrated by application to MgO, for which extensive experimental data are available. These include the variation of relative volume V with temperature T and pressure P from both static and shock-compression experiments, acoustic measurements of compressional and shear (and hence bulk) moduli, and calorimetric determinations of entropy as a function of temperature at atmospheric pressure. Preliminary NA modeling highlighted tensions between marginally incompatible subsets of data. We therefore excluded one-atmosphere V(T) data for T ≥ 1800 K for which the quasi-harmonic approximation is inadequate (Wu et al., 2008) along with elastic moduli derived from Brillouin spectroscopy under conditions (P ≥ 14 GPa) where significant departures from hydrostatic conditions are expected. With these

  17. Nonlinear modes of the tensor Dirac equation and CPT violation

    NASA Technical Reports Server (NTRS)

    Reifler, Frank J.; Morris, Randall D.

    1993-01-01

    Recently, it has been shown that Dirac's bispinor equation can be expressed, in an equivalent tensor form, as a constrained Yang-Mills equation in the limit of an infinitely large coupling constant. It was also shown that the free tensor Dirac equation is a completely integrable Hamiltonian system with Lie algebra type Poisson brackets, from which Fermi quantization can be derived directly without using bispinors. The Yang-Mills equation for a finite coupling constant is investigated. It is shown that the nonlinear Yang-Mills equation has exact plane wave solutions in one-to-one correspondence with the plane wave solutions of Dirac's bispinor equation. The theory of nonlinear dispersive waves is applied to establish the existence of wave packets. The CPT violation of these nonlinear wave packets, which could lead to new observable effects consistent with current experimental bounds, is investigated.

  18. Painlevé equations--nonlinear special functions

    NASA Astrophysics Data System (ADS)

    Clarkson, Peter A.

    2003-04-01

    The six Painlevé equations (PI-PVI) were first discovered about a hundred years ago by Painlevé and his colleagues in an investigation of nonlinear second-order ordinary differential equations. Recently, there has been considerable interest in the Painlevé equations primarily due to the fact that they arise as reductions of the soliton equations which are solvable by inverse scattering. Consequently, the Painlevé equations can be regarded as completely integrable equations and possess solutions which can be expressed in terms of solutions of linear integral equations, despite being nonlinear equations. Although first discovered from strictly mathematical considerations, the Painlevé equations have arisen in a variety of important physical applications including statistical mechanics, plasma physics, nonlinear waves, quantum gravity, quantum field theory, general relativity, nonlinear optics and fibre optics. The Painlevé equations may be thought of a nonlinear analogues of the classical special functions. They possess hierarchies of rational solutions and one-parameter families of solutions expressible in terms of the classical special functions, for special values of the parameters. Further the Painlevé equations admit symmetries under affine Weyl groups which are related to the associated Bäcklund transformations. In this paper, I discuss some of the remarkable properties which the Painlevé equations possess including connection formulae, Bäcklund transformations associated discrete equations, and hierarchies of exact solutions. In particular, the second Painlevé equation PII is used to illustrate these properties and some of the applications of PII are also discussed.

  19. An integrable shallow water equation with linear and nonlinear dispersion.

    PubMed

    Dullin, H R; Gottwald, G A; Holm, D D

    2001-11-01

    We use asymptotic analysis and a near-identity normal form transformation from water wave theory to derive a 1+1 unidirectional nonlinear wave equation that combines the linear dispersion of the Korteweg-deVries (KdV) equation with the nonlinear/nonlocal dispersion of the Camassa-Holm (CH) equation. This equation is one order more accurate in asymptotic approximation beyond KdV, yet it still preserves complete integrability via the inverse scattering transform method. Its traveling wave solutions contain both the KdV solitons and the CH peakons as limiting cases. PMID:11690414

  20. Oscillation theorems for second order nonlinear forced differential equations.

    PubMed

    Salhin, Ambarka A; Din, Ummul Khair Salma; Ahmad, Rokiah Rozita; Noorani, Mohd Salmi Md

    2014-01-01

    In this paper, a class of second order forced nonlinear differential equation is considered and several new oscillation theorems are obtained. Our results generalize and improve those known ones in the literature. PMID:25077054

  1. Multivariate Padé Approximations For Solving Nonlinear Diffusion Equations

    NASA Astrophysics Data System (ADS)

    Turut, V.

    2015-11-01

    In this paper, multivariate Padé approximation is applied to power series solutions of nonlinear diffusion equations. As it is seen from tables, multivariate Padé approximation (MPA) gives reliable solutions and numerical results.

  2. Late-time attractor for the cubic nonlinear wave equation

    SciTech Connect

    Szpak, Nikodem

    2010-08-15

    We apply our recently developed scaling technique for obtaining late-time asymptotics to the cubic nonlinear wave equation and explain the appearance and approach to the two-parameter attractor found recently by Bizon and Zenginoglu.

  3. Nonlinear ordinary differential equations: A discussion on symmetries and singularities

    NASA Astrophysics Data System (ADS)

    Paliathanasis, Andronikos; Leach, P. G. L.

    2016-06-01

    Two essential methods, the symmetry analysis and the singularity analysis, for the study of the integrability of nonlinear ordinary differential equations is the purpose of this work. The main similarities and the differences of these two different methods are discussed.

  4. Numerical methods for the Poisson-Fermi equation in electrolytes

    NASA Astrophysics Data System (ADS)

    Liu, Jinn-Liang

    2013-08-01

    The Poisson-Fermi equation proposed by Bazant, Storey, and Kornyshev [Phys. Rev. Lett. 106 (2011) 046102] for ionic liquids is applied to and numerically studied for electrolytes and biological ion channels in three-dimensional space. This is a fourth-order nonlinear PDE that deals with both steric and correlation effects of all ions and solvent molecules involved in a model system. The Fermi distribution follows from classical lattice models of configurational entropy of finite size ions and solvent molecules and hence prevents the long and outstanding problem of unphysical divergence predicted by the Gouy-Chapman model at large potentials due to the Boltzmann distribution of point charges. The equation reduces to Poisson-Boltzmann if the correlation length vanishes. A simplified matched interface and boundary method exhibiting optimal convergence is first developed for this equation by using a gramicidin A channel model that illustrates challenging issues associated with the geometric singularities of molecular surfaces of channel proteins in realistic 3D simulations. Various numerical methods then follow to tackle a range of numerical problems concerning the fourth-order term, nonlinearity, stability, efficiency, and effectiveness. The most significant feature of the Poisson-Fermi equation, namely, its inclusion of steric and correlation effects, is demonstrated by showing good agreement with Monte Carlo simulation data for a charged wall model and an L type calcium channel model.

  5. Kinetic effects on Alfven wave nonlinearity. II - The modified nonlinear wave equation

    NASA Technical Reports Server (NTRS)

    Spangler, Steven R.

    1990-01-01

    A previously developed Vlasov theory is used here to study the role of resonant particle and other kinetic effects on Alfven wave nonlinearity. A hybrid fluid-Vlasov equation approach is used to obtain a modified version of the derivative nonlinear Schroedinger equation. The differences between a scalar model for the plasma pressure and a tensor model are discussed. The susceptibilty of the modified nonlinear wave equation to modulational instability is studied. The modulational instability normally associated with the derivative nonlinear Schroedinger equation will, under most circumstances, be restricted to left circularly polarized waves. The nonlocal term in the modified nonlinear wave equation engenders a new modulational instability that is independent of beta and the sense of circular polarization. This new instability may explain the occurrence of wave packet steepening for all values of the plasma beta in the vicinity of the earth's bow shock.

  6. Invariant tori for a class of nonlinear evolution equations

    SciTech Connect

    Kolesov, A Yu; Rozov, N Kh

    2013-06-30

    The paper looks at quite a wide class of nonlinear evolution equations in a Banach space, including the typical boundary value problems for the main wave equations in mathematical physics (the telegraph equation, the equation of a vibrating beam, various equations from the elastic stability and so on). For this class of equations a unified approach to the bifurcation of invariant tori of arbitrary finite dimension is put forward. Namely, the problem of the birth of such tori from the zero equilibrium is investigated under the assumption that in the stability problem for this equilibrium the situation arises close to an infinite-dimensional degeneracy. Bibliography: 28 titles.

  7. Nonlinear Kramers equation associated with nonextensive statistical mechanics.

    PubMed

    Mendes, G A; Ribeiro, M S; Mendes, R S; Lenzi, E K; Nobre, F D

    2015-05-01

    Stationary and time-dependent solutions of a nonlinear Kramers equation, as well as its associated nonlinear Fokker-Planck equations, are investigated within the context of Tsallis nonextensive statistical mechanics. Since no general analytical time-dependent solutions are found for such a nonlinear Kramers equation, an ansatz is considered and the corresponding asymptotic behavior is studied and compared with those known for the standard linear Kramers equation. The H-theorem is analyzed for this equation and its connection with Tsallis entropy is investigated. An application is discussed, namely the motion of Hydra cells in two-dimensional cellular aggregates, for which previous measurements have verified q-Gaussian distributions for velocity components and superdiffusion. The present analysis is in quantitative agreement with these experimental results. PMID:26066118

  8. Lattice Boltzmann model for generalized nonlinear wave equations

    NASA Astrophysics Data System (ADS)

    Lai, Huilin; Ma, Changfeng

    2011-10-01

    In this paper, a lattice Boltzmann model is developed to solve a class of the nonlinear wave equations. Through selecting equilibrium distribution function and an amending function properly, the governing evolution equation can be recovered correctly according to our proposed scheme, in which the Chapman-Enskog expansion is employed. We validate the algorithm on some problems where analytic solutions are available, including the second-order telegraph equation, the nonlinear Klein-Gordon equation, and the damped, driven sine-Gordon equation. It is found that the numerical results agree well with the analytic solutions, which indicates that the present algorithm is very effective and can be used to solve more general nonlinear problems.

  9. Solutions to Class of Linear and Nonlinear Fractional Differential Equations

    NASA Astrophysics Data System (ADS)

    Abdel-Salam, Emad A.-B.; Hassan, Gamal F.

    2016-02-01

    In this paper, the fractional auxiliary sub-equation expansion method is proposed to solve nonlinear fractional differential equations. To illustrate the effectiveness of the method, we discuss the space-time fractional KdV equation, the space-time fractional RLW equation, the space-time fractional Boussinesq equation, and the (3+1)-space-time fractional ZK equation. The solutions are expressed in terms of fractional hyperbolic and fractional trigonometric functions. These solutions are useful to understand the mechanisms of the complicated nonlinear physical phenomena and fractional differential equations. Among these solutions, some are found for the first time. The analytical solution of homogenous linear FDEs with constant coefficients are obtained by using the series and the Mittag–Leffler function methods. The obtained results recover the well-know solutions when α = 1.

  10. Solutions to Class of Linear and Nonlinear Fractional Differential Equations

    NASA Astrophysics Data System (ADS)

    Emad A-B., Abdel-Salam; Gamal, F. Hassan

    2016-02-01

    In this paper, the fractional auxiliary sub-equation expansion method is proposed to solve nonlinear fractional differential equations. To illustrate the effectiveness of the method, we discuss the space-time fractional KdV equation, the space-time fractional RLW equation, the space-time fractional Boussinesq equation, and the (3+1)-space-time fractional ZK equation. The solutions are expressed in terms of fractional hyperbolic and fractional trigonometric functions. These solutions are useful to understand the mechanisms of the complicated nonlinear physical phenomena and fractional differential equations. Among these solutions, some are found for the first time. The analytical solution of homogenous linear FDEs with constant coefficients are obtained by using the series and the Mittag-Leffler function methods. The obtained results recover the well-know solutions when α = 1.

  11. Derivation of an Applied Nonlinear Schroedinger Equation.

    SciTech Connect

    Pitts, Todd Alan; Laine, Mark Richard; Schwarz, Jens; Rambo, Patrick K.; Karelitz, David B.

    2015-01-01

    We derive from first principles a mathematical physics model useful for understanding nonlinear optical propagation (including filamentation). All assumptions necessary for the development are clearly explained. We include the Kerr effect, Raman scattering, and ionization (as well as linear and nonlinear shock, diffraction and dispersion). We explain the phenomenological sub-models and each assumption required to arrive at a complete and consistent theoretical description. The development includes the relationship between shock and ionization and demonstrates why inclusion of Drude model impedance effects alters the nature of the shock operator. Unclassified Unlimited Release

  12. Nonlinear flap-lag axial equations of a rotating beam

    NASA Technical Reports Server (NTRS)

    Kaza, K. R. V.; Kvaternik, R. G.

    1977-01-01

    It is possible to identify essentially four approaches by which analysts have established either the linear or nonlinear governing equations of motion for a particular problem related to the dynamics of rotating elastic bodies. The approaches include the effective applied load artifice in combination with a variational principle and the use of Newton's second law, written as D'Alembert's principle, applied to the deformed configuration. A third approach is a variational method in which nonlinear strain-displacement relations and a first-degree displacement field are used. The method introduced by Vigneron (1975) for deriving the linear flap-lag equations of a rotating beam constitutes the fourth approach. The reported investigation shows that all four approaches make use of the geometric nonlinear theory of elasticity. An alternative method for deriving the nonlinear coupled flap-lag-axial equations of motion is also discussed.

  13. Entropy and convexity for nonlinear partial differential equations

    PubMed Central

    Ball, John M.; Chen, Gui-Qiang G.

    2013-01-01

    Partial differential equations are ubiquitous in almost all applications of mathematics, where they provide a natural mathematical description of many phenomena involving change in physical, chemical, biological and social processes. The concept of entropy originated in thermodynamics and statistical physics during the nineteenth century to describe the heat exchanges that occur in the thermal processes in a thermodynamic system, while the original notion of convexity is for sets and functions in mathematics. Since then, entropy and convexity have become two of the most important concepts in mathematics. In particular, nonlinear methods via entropy and convexity have been playing an increasingly important role in the analysis of nonlinear partial differential equations in recent decades. This opening article of the Theme Issue is intended to provide an introduction to entropy, convexity and related nonlinear methods for the analysis of nonlinear partial differential equations. We also provide a brief discussion about the content and contributions of the papers that make up this Theme Issue. PMID:24249768

  14. The numerical dynamic for highly nonlinear partial differential equations

    NASA Technical Reports Server (NTRS)

    Lafon, A.; Yee, H. C.

    1992-01-01

    Problems associated with the numerical computation of highly nonlinear equations in computational fluid dynamics are set forth and analyzed in terms of the potential ranges of spurious behaviors. A reaction-convection equation with a nonlinear source term is employed to evaluate the effects related to spatial and temporal discretizations. The discretization of the source term is described according to several methods, and the various techniques are shown to have a significant effect on the stability of the spurious solutions. Traditional linearized stability analyses cannot provide the level of confidence required for accurate fluid dynamics computations, and the incorporation of nonlinear analysis is proposed. Nonlinear analysis based on nonlinear dynamical systems complements the conventional linear approach and is valuable in the analysis of hypersonic aerodynamics and combustion phenomena.

  15. The Jeffcott equations in nonlinear rotordynamics

    NASA Technical Reports Server (NTRS)

    Zalik, R. A.

    1987-01-01

    The Jeffcott equations are a system of coupled differential equations representing the behavior of a rotating shaft. This is a simple model which allows investigation of the basic dynamic behavior of rotating machinery. Nolinearities can be introduced by taking into consideration deadband, side force, and rubbing, among others. The properties of the solutions of the Jeffcott equations with deadband are studied. In particular, it is shown how bounds for the solution of these equations can be obtained from bounds for the solutions of the linearized equations. By studying the behavior of the Fourier transforms of the solutions, we are also able to predict the onset of destructive vibrations. These conclusions are verified by means of numerical solutions of the equations, and of power spectrum density (PSD) plots. This study offers insight into a possible detection method to determine pump stability margins during flight and hot fire tests, and was motivated by the need to explain a phenomenon observed in the development phase of the cryogenic pumps of the Space Shuttle, during hot fire ground testing; namely, the appearance of vibrations at frequencies that could not be accounted for by means of linear models.

  16. Relations between nonlinear Riccati equations and other equations in fundamental physics

    NASA Astrophysics Data System (ADS)

    Schuch, Dieter

    2014-10-01

    Many phenomena in the observable macroscopic world obey nonlinear evolution equations while the microscopic world is governed by quantum mechanics, a fundamental theory that is supposedly linear. In order to combine these two worlds in a common formalism, at least one of them must sacrifice one of its dogmas. Linearizing nonlinear dynamics would destroy the fundamental property of this theory, however, it can be shown that quantum mechanics can be reformulated in terms of nonlinear Riccati equations. In a first step, it will be shown that the information about the dynamics of quantum systems with analytical solutions can not only be obtainable from the time-dependent Schrödinger equation but equally-well from a complex Riccati equation. Comparison with supersymmetric quantum mechanics shows that even additional information can be obtained from the nonlinear formulation. Furthermore, the time-independent Schrödinger equation can also be rewritten as a complex Riccati equation for any potential. Extension of the Riccati formulation to include irreversible dissipative effects is straightforward. Via (real and complex) Riccati equations, other fields of physics can also be treated within the same formalism, e.g., statistical thermodynamics, nonlinear dynamical systems like those obeying a logistic equation as well as wave equations in classical optics, Bose- Einstein condensates and cosmological models. Finally, the link to abstract "quantizations" such as the Pythagorean triples and Riccati equations connected with trigonometric and hyperbolic functions will be shown.

  17. Generalized nonlinear Proca equation and its free-particle solutions

    NASA Astrophysics Data System (ADS)

    Nobre, F. D.; Plastino, A. R.

    2016-06-01

    We introduce a nonlinear extension of Proca's field theory for massive vector (spin 1) bosons. The associated relativistic nonlinear wave equation is related to recently advanced nonlinear extensions of the Schrödinger, Dirac, and Klein-Gordon equations inspired on the non-extensive generalized thermostatistics. This is a theoretical framework that has been applied in recent years to several problems in nuclear and particle physics, gravitational physics, and quantum field theory. The nonlinear Proca equation investigated here has a power-law nonlinearity characterized by a real parameter q (formally corresponding to the Tsallis entropic parameter) in such a way that the standard linear Proca wave equation is recovered in the limit q → 1. We derive the nonlinear Proca equation from a Lagrangian, which, besides the usual vectorial field Ψ ^{μ }(ěc {x},t), involves an additional field Φ ^{μ }(ěc {x},t). We obtain exact time-dependent soliton-like solutions for these fields having the form of a q-plane wave, and we show that both field equations lead to the relativistic energy-momentum relation E2 = p2c2 + m2c4 for all values of q. This suggests that the present nonlinear theory constitutes a new field theoretical representation of particle dynamics. In the limit of massless particles the present q-generalized Proca theory reduces to Maxwell electromagnetism, and the q-plane waves yield localized, transverse solutions of Maxwell equations. Physical consequences and possible applications are discussed.

  18. Optimal Variational Asymptotic Method for Nonlinear Fractional Partial Differential Equations

    PubMed Central

    Baranwal, Vipul K.; Pandey, Ram K.

    2014-01-01

    We propose optimal variational asymptotic method to solve time fractional nonlinear partial differential equations. In the proposed method, an arbitrary number of auxiliary parameters γ0, γ1, γ2,… and auxiliary functions H0(x), H1(x), H2(x),… are introduced in the correction functional of the standard variational iteration method. The optimal values of these parameters are obtained by minimizing the square residual error. To test the method, we apply it to solve two important classes of nonlinear partial differential equations: (1) the fractional advection-diffusion equation with nonlinear source term and (2) the fractional Swift-Hohenberg equation. Only few iterations are required to achieve fairly accurate solutions of both the first and second problems.

  19. An iterative method for systems of nonlinear hyperbolic equations

    NASA Technical Reports Server (NTRS)

    Scroggs, Jeffrey S.

    1989-01-01

    An iterative algorithm for the efficient solution of systems of nonlinear hyperbolic equations is presented. Parallelism is evident at several levels. In the formation of the iteration, the equations are decoupled, thereby providing large grain parallelism. Parallelism may also be exploited within the solves for each equation. Convergence of the interation is established via a bounding function argument. Experimental results in two-dimensions are presented.

  20. Liapunov functions for non-linear difference equation stability analysis.

    NASA Technical Reports Server (NTRS)

    Park, K. E.; Kinnen, E.

    1972-01-01

    Liapunov functions to determine the stability of non-linear autonomous difference equations can be developed through the use of auxiliary exact difference equations. For this purpose definitions are introduced for the gradient of an implicit function of a discrete variable, a principal sum, a definite sum and an exact difference equation, and a theorem for exactness of a difference form is proved. Examples illustrate the procedure.

  1. Nonlinear Resonance and Duffing's Spring Equation

    ERIC Educational Resources Information Center

    Fay, Temple H.

    2006-01-01

    This note discusses the boundary in the frequency--amplitude plane for boundedness of solutions to the forced spring Duffing type equation. For fixed initial conditions and fixed parameter [epsilon] results are reported of a systematic numerical investigation on the global stability of solutions to the initial value problem as the parameters F and…

  2. Nonlinear Resonance and Duffing's Spring Equation II

    ERIC Educational Resources Information Center

    Fay, T. H.; Joubert, Stephan V.

    2007-01-01

    The paper discusses the boundary in the frequency-amplitude plane for boundedness of solutions to the forced spring Duffing type equation x[umlaut] + x + [epsilon]x[cubed] = F cos[omega]t. For fixed initial conditions and for representative fixed values of the parameter [epsilon], the results are reported of a systematic numerical investigation…

  3. Non-Linear Spring Equations and Stability

    ERIC Educational Resources Information Center

    Fay, Temple H.; Joubert, Stephan V.

    2009-01-01

    We discuss the boundary in the Poincare phase plane for boundedness of solutions to spring model equations of the form [second derivative of]x + x + epsilonx[superscript 2] = Fcoswt and the [second derivative of]x + x + epsilonx[superscript 3] = Fcoswt and report the results of a systematic numerical investigation on the global stability of…

  4. A Procedure to Construct Conservation Laws of Nonlinear Evolution Equations

    NASA Astrophysics Data System (ADS)

    Yaşar, Emrullah; San, Sait

    2016-05-01

    In this article, we established abundant local conservation laws to some nonlinear evolution equations by a new combined approach, which is a union of multiplier and Ibragimov's new conservation theorem method. One can conclude that the solutions of the adjoint equations corresponding to the new conservation theorem can be obtained via multiplier functions. Many new families of conservation laws of the Pochammer-Chree (PC) equation and the Kaup-Boussinesq type of coupled KdV system are successfully obtained. The combined method presents a wider applicability for handling the conservation laws of nonlinear wave equations. The conserved vectors obtained here can be important for the explanation of some practical physical problems, reductions, and solutions of the underlying equations.

  5. An Effective Schema for Solving Some Nonlinear Partial Differential Equation Arising In Nonlinear Physics

    NASA Astrophysics Data System (ADS)

    Baskonus, Haci Mehmet; Bulut, Hasan

    2015-10-01

    In this paper, a new computational algorithm called the "Improved Bernoulli sub-equation function method" has been proposed. This algorithm is based on the Bernoulli Sub-ODE method. Firstly, the nonlinear evaluation equations used for representing various physical phenomena are converted into ordinary differential equations by using various wave transformations. In this way, nonlinearity is preserved and represent nonlinear physical problems. The nonlinearity of physical problems together with the derivations is seen as the secret key to solve the general structure of problems. The proposed analytical schema, which is newly submitted to the literature, has been expressed comprehensively in this paper. The analytical solutions, application results, and comparisons are presented by plotting the two and three dimensional surfaces of analytical solutions obtained by using the methods proposed for some important nonlinear physical problems. Finally, a conclusion has been presented by mentioning the important discoveries in this study.

  6. Evolution equation for non-linear cosmological perturbations

    SciTech Connect

    Brustein, Ram; Riotto, Antonio E-mail: Antonio.Riotto@cern.ch

    2011-11-01

    We present a novel approach, based entirely on the gravitational potential, for studying the evolution of non-linear cosmological matter perturbations. Starting from the perturbed Einstein equations, we integrate out the non-relativistic degrees of freedom of the cosmic fluid and obtain a single closed equation for the gravitational potential. We then verify the validity of the new equation by comparing its approximate solutions to known results in the theory of non-linear cosmological perturbations. First, we show explicitly that the perturbative solution of our equation matches the standard perturbative solutions. Next, using the mean field approximation to the equation, we show that its solution reproduces in a simple way the exponential suppression of the non-linear propagator on small scales due to the velocity dispersion. Our approach can therefore reproduce the main features of the renormalized perturbation theory and (time)-renormalization group approaches to the study of non-linear cosmological perturbations, with some possibly important differences. We conclude by a preliminary discussion of the nature of the full solutions of the equation and their significance.

  7. Algebraic calculation of stroboscopic maps of ordinary, nonlinear differential equations

    SciTech Connect

    Wackerbauer, R. ); Huebler, A. . Center for Complex Systems Research); Mayer-Kress, G. California Univ., Santa Cruz, CA . Dept. of Mathematics)

    1991-07-25

    The relation between the parameters of a differential equation and corresponding discrete maps are becoming increasingly important in the study of nonlinear dynamical systems. Maps are well adopted for numerical computation and several universal properties of them are known. Therefore some perturbation methods have been proposed to deduce them for physical systems, which can be modeled by an ordinary differential equation (ODE) with a small nonlinearity. A new iterative, rigorous algebraic method for the calculation of the coefficients of a Taylor expansion of a stroboscopic map from ODE's with not necessarily small nonlinearities is presented. It is shown analytically that most of the coefficients are small for a small integration time and grow slowly in the course of time if the flow vector field of the ODE is polynomial and if the ODE has fixed point in the origin. Approximations of different orders respectively of the rest term are investigated for several nonlinear systems. 31 refs., 16 figs.

  8. A Jacobi collocation approximation for nonlinear coupled viscous Burgers' equation

    NASA Astrophysics Data System (ADS)

    Doha, Eid; Bhrawy, Ali; Abdelkawy, Mohamed; Hafez, Ramy

    2014-02-01

    This article presents a numerical approximation of the initial-boundary nonlinear coupled viscous Burgers' equation based on spectral methods. A Jacobi-Gauss-Lobatto collocation (J-GL-C) scheme in combination with the implicit Runge-Kutta-Nyström (IRKN) scheme are employed to obtain highly accurate approximations to the mentioned problem. This J-GL-C method, based on Jacobi polynomials and Gauss-Lobatto quadrature integration, reduces solving the nonlinear coupled viscous Burgers' equation to a system of nonlinear ordinary differential equation which is far easier to solve. The given examples show, by selecting relatively few J-GL-C points, the accuracy of the approximations and the utility of the approach over other analytical or numerical methods. The illustrative examples demonstrate the accuracy, efficiency, and versatility of the proposed algorithm.

  9. Biological multi-rogue waves in discrete nonlinear Schrödinger equation with saturable nonlinearities

    NASA Astrophysics Data System (ADS)

    Tchinang Tchameu, J. D.; Togueu Motcheyo, A. B.; Tchawoua, C.

    2016-09-01

    The discrete multi-rogue waves (DMRW) as solution of the discrete nonlinear Schrödinger (DNLS) equation with saturable nonlinearities is studied numerically. These biological rogue waves represent the complex probability amplitude of finding an amide-I vibrational quantum at a site. We observe that the growth in the higher order saturable nonlinearity implies the formation of DMRW including an increase in the short-living DMRW and a decrease in amplitude of the long-living DMRW.

  10. Stochasticity in numerical solutions of the nonlinear Schroedinger equation

    NASA Technical Reports Server (NTRS)

    Shen, Mei-Mei; Nicholson, D. R.

    1987-01-01

    The cubically nonlinear Schroedinger equation is an important model of nonlinear phenomena in fluids and plasmas. Numerical solutions in a spatially periodic system commonly involve truncation to a finite number of Fourier modes. These solutions are found to be stochastic in the sense that the largest Liapunov exponent is positive. As the number of modes is increased, the size of this exponent appears to converge to zero, in agreement with the recent demonstration of the integrability of the spatially periodic case.

  11. The Buoyancy Budget With a Nonlinear Equation of State

    NASA Astrophysics Data System (ADS)

    Hieronymus, M. H.; Nycander, J.

    2012-12-01

    There has been a number of studies focusing on different aspects of having a nonlinear equation of state for seawater. Amongst other things it has been shown that the nonlinear equation of state has implications for the oceanic energy budget and that nonlinear processes can be a significant source of dense water production. This presentation will focus on the oceanic buoyancy budget. The nonlinear equation of state of seawater can introduce a sink or source of buoyancy when water parcels of unequal salinities and temperatures are mixed. A common example is the process known as cabbeling, which is responsible for forming a water mass that is denser than the original constituents in a mixture of two water masses with equal densities but different salinities and temperatures. This presentation will contain quantitative estimates of these nonlinear effects on the buoyancy budget of the global ocean. Because of these nonlinear effects there is a net sink of buoyancy in the oceans interior and the size of this sink can be determined from the buoyancy fluxes at the ocean boundaries. These boundary buoyancy fluxes are calculated using two surface heat flux climatologies one based on in situ measurements, the other on a reanalysis and in both cases using a nonlinear equation of state. The presentation also treats the buoyancy budget in the State of the art ocean model Nucleus for European Modelling of the Ocean (NEMO) and the results from NEMO are seen to be in good agreement with the buoyancy budgets based on the heat flux climatologies. Using the ocean model is a good complement to the surface flux climatologies, because in NEMO the buoyancy fluxes can be evaluated at all vertical model levels. This means that the vertical distribution of the buoyancy sink can be looked into. The results from NEMO shows that in large parts of the ocean the nonlinear buoyancy sink is the largest contribution to the buoyancy budget.

  12. Nonlinear generalized master equations and accounting for initial correlations

    NASA Astrophysics Data System (ADS)

    Los, V. F.

    2009-08-01

    We develop a new method based on using a time-dependent operator (generally not a projection operator) converting a distribution function (statistical operator) of a total system into the relevant form that allows deriving new exact nonlinear generalized master equations (GMEs). The derived inhomogeneous nonlinear GME is a generalization of the linear Nakajima-Zwanzig GME and can be viewed as an alternative to the BBGKY chain. It is suitable for obtaining both nonlinear and linear evolution equations. As in the conventional linear GME, there is an inhomogeneous term comprising all multiparticle initial correlations. To include the initial correlations into consideration, we convert the obtained inhomogeneous nonlinear GME into the homogenous form by the previously suggested method. We use no conventional approximation like the random phase approximation (RPA) or the Bogoliubov principle of weakening of initial correlations. The obtained exact homogeneous nonlinear GME describes all evolution stages of the (sub)system of interest and treats initial correlations on an equal footing with collisions via the modified memory kernel. As an application, we obtain a new homogeneous nonlinear equation retaining initial correlations for a one-particle distribution function of the spatially inhomogeneous nonideal gas of classical particles. In contrast to existing approaches, this equation holds for all time scales and takes the influence of pair collisions and initial correlations on the dissipative and nondissipative characteristics of the system into account consistently with the adopted approximation (linear in the gas density). We show that on the kinetic time scale, the time-reversible terms resulting from the initial correlations vanish (if the particle dynamics are endowed with the mixing property) and this equation can be converted into the Vlasov-Landau and Boltzmann equations without any additional commonly used approximations. The entire process of transition can

  13. Decay and stability for nonlinear hyperbolic equations

    NASA Astrophysics Data System (ADS)

    Marcati, Pierangelo

    This paper deals with the asymptotic stability of the null solution of a semilinear partial differential equation. The La Salle Invariance Principle has been used to obtain the stability results. The first result is given under quite general hypotheses assuming only the precompactness of the orbits and the local existence. In the second part, under some restrictions, sufficient conditions for precompactness of the orbits and decay of solutions are given. An existence and uniqueness theorem is proved in the Appendix. Some examples are given.

  14. Cylindrical nonlinear Schroedinger equation versus cylindrical Korteweg-de Vries equation

    SciTech Connect

    Fedele, Renato; De Nicola, Sergio; Grecu, Dan; Visinescu, Anca; Shukla, Padma K.

    2008-10-15

    A correspondence between the family of cylindrical nonlinear Schroedinger (cNLS) equations and the one of cylindrical Korteweg-de Vries (cKdV) equations is constructed. It associates non stationary solutions of the first family with the ones of the second family. This is done by using a correspondence, recently found, between the families of generalized NLS equation and generalized KdV equation, and their solutions in the form of travelling waves, respectively. In particular, non-stationary soliton-like solutions of the cNLS equation can be associated with non-stationary soliton-like solutions of cKdV equation.

  15. From nonlinear Schroedinger hierarchy to some (2+1)-dimensional nonlinear pseudodifferential equations

    SciTech Connect

    Yang Xiao; Du Dianlou

    2010-08-15

    The Poisson structure on C{sup N}xR{sup N} is introduced to give the Hamiltonian system associated with a spectral problem which yields the nonlinear Schroedinger (NLS) hierarchy. The Hamiltonian system is proven to be Liouville integrable. Some (2+1)-dimensional equations including NLS equation, Kadomtesev-Petviashvili I (KPI) equation, coupled KPI equation, and modified Kadomtesev-Petviashvili (mKP) equation, are decomposed into Hamilton flows via the NLS hierarchy. The algebraic curve, Abel-Jacobi coordinates, and Riemann-Jacobi inversion are used to obtain the algebrogeometric solutions of these equations.

  16. From nonlinear Schrödinger hierarchy to some (2+1)-dimensional nonlinear pseudodifferential equations

    NASA Astrophysics Data System (ADS)

    Yang, Xiao; Du, Dianlou

    2010-08-01

    The Poisson structure on CN×RN is introduced to give the Hamiltonian system associated with a spectral problem which yields the nonlinear Schrödinger (NLS) hierarchy. The Hamiltonian system is proven to be Liouville integrable. Some (2+1)-dimensional equations including NLS equation, Kadomtesev-Petviashvili I (KPI) equation, coupled KPI equation, and modified Kadomtesev-Petviashvili (mKP) equation, are decomposed into Hamilton flows via the NLS hierarchy. The algebraic curve, Abel-Jacobi coordinates, and Riemann-Jacobi inversion are used to obtain the algebrogeometric solutions of these equations.

  17. Convergence of Galerkin approximations for operator Riccati equations: A nonlinear evolution equation approach

    NASA Technical Reports Server (NTRS)

    Rosen, I. G.

    1988-01-01

    An approximation and convergence theory was developed for Galerkin approximations to infinite dimensional operator Riccati differential equations formulated in the space of Hilbert-Schmidt operators on a separable Hilbert space. The Riccati equation was treated as a nonlinear evolution equation with dynamics described by a nonlinear monotone perturbation of a strongly coercive linear operator. A generic approximation result was proven for quasi-autonomous nonlinear evolution system involving accretive operators which was then used to demonstrate the Hilbert-Schmidt norm convergence of Galerkin approximations to the solution of the Riccati equation. The application of the results was illustrated in the context of a linear quadratic optimal control problem for a one dimensional heat equation.

  18. On the Dirichlet problem for a nonlinear elliptic equation

    NASA Astrophysics Data System (ADS)

    Egorov, Yu V.

    2015-04-01

    We prove the existence of an infinite set of solutions to the Dirichlet problem for a nonlinear elliptic equation of the second order. Such a problem for a nonlinear elliptic equation with Laplace operator was studied earlier by Krasnosel'skii, Bahri, Berestycki, Lions, Rabinowitz, Struwe and others. We study the spectrum of this problem and prove the weak convergence to 0 of the sequence of normed eigenfunctions. Moreover, we obtain some estimates for the 'Fourier coefficients' of functions in W^1p,0(Ω). This allows us to improve the preceding results. Bibliography: 8 titles.

  19. Multiply scaled constrained nonlinear equation solvers. [for nonlinear heat conduction problems

    NASA Technical Reports Server (NTRS)

    Padovan, Joe; Krishna, Lala

    1986-01-01

    To improve the numerical stability of nonlinear equation solvers, a partitioned multiply scaled constraint scheme is developed. This scheme enables hierarchical levels of control for nonlinear equation solvers. To complement the procedure, partitioned convergence checks are established along with self-adaptive partitioning schemes. Overall, such procedures greatly enhance the numerical stability of the original solvers. To demonstrate and motivate the development of the scheme, the problem of nonlinear heat conduction is considered. In this context the main emphasis is given to successive substitution-type schemes. To verify the improved numerical characteristics associated with partitioned multiply scaled solvers, results are presented for several benchmark examples.

  20. Intermittency and solitons in the driven dissipative nonlinear Schroedinger equation

    NASA Technical Reports Server (NTRS)

    Moon, H. T.; Goldman, M. V.

    1984-01-01

    The cubic nonlinear Schroedinger equation, in the presence of driving and Landau damping, is studied numerically. As the pump intensity is increased, the system exhibits a transition from intermittency to a two-torus to chaos. The laminar phase of the intermittency is also a two-torus motion which corresponds in physical space to two identical solitons of amplitude determined by a power-balance equation.

  1. Conservation laws of inviscid Burgers equation with nonlinear damping

    NASA Astrophysics Data System (ADS)

    Abdulwahhab, Muhammad Alim

    2014-06-01

    In this paper, the new conservation theorem presented in Ibragimov (2007) [14] is used to find conservation laws of the inviscid Burgers equation with nonlinear damping ut+g(u)ux+λh(u)=0. We show that this equation is both quasi self-adjoint and self-adjoint, and use these concepts to simplify conserved quantities for various choices of g(u) and h(u).

  2. Optimization of a finite difference method for nonlinear wave equations

    NASA Astrophysics Data System (ADS)

    Chen, Miaochao

    2013-07-01

    Wave equations have important fluid dynamics background, which are extensively used in many fields, such as aviation, meteorology, maritime, water conservancy, etc. This paper is devoted to the explicit difference method for nonlinear wave equations. Firstly, a three-level and explicit difference scheme is derived. It is shown that the explicit difference scheme is uniquely solvable and convergent. Moreover, a numerical experiment is conducted to illustrate the theoretical results of the presented method.

  3. Topological horseshoes in travelling waves of discretized nonlinear wave equations

    SciTech Connect

    Chen, Yi-Chiuan; Chen, Shyan-Shiou; Yuan, Juan-Ming

    2014-04-15

    Applying the concept of anti-integrable limit to coupled map lattices originated from space-time discretized nonlinear wave equations, we show that there exist topological horseshoes in the phase space formed by the initial states of travelling wave solutions. In particular, the coupled map lattices display spatio-temporal chaos on the horseshoes.

  4. Tensor methods for large sparse systems of nonlinear equations

    SciTech Connect

    Bouaricha, A.; Schnabel, R.B.

    1996-12-31

    This paper introduces censor methods for solving, large sparse systems of nonlinear equations. Tensor methods for nonlinear equations were developed in the context of solving small to medium- sized dense problems. They base each iteration on a quadratic model of the nonlinear equations. where the second-order term is selected so that the model requires no more derivative or function information per iteration than standard linear model-based methods, and hardly more storage or arithmetic operations per iteration. Computational experiments on small to medium-sized problems have shown censor methods to be considerably more efficient than standard Newton-based methods, with a particularly large advantage on singular problems. This paper considers the extension of this approach to solve large sparse problems. The key issue that must be considered is how to make efficient use of sparsity in forming and solving the censor model problem at each iteration. Accomplishing this turns out to require an entirely new way of solving the tensor model that successfully exploits the sparsity of the Jacobian, whether the Jacobian is nonsingular or singular. We develop such an approach and, based upon it, an efficient tensor method for solving large sparse systems of nonlinear equations. Test results indicate that this tensor method is significantly more efficient and robust than an efficient sparse Newton-based method. in terms of iterations, function evaluations. and execution time.

  5. Bounded and periodic solutions of nonlinear functional differential equations

    SciTech Connect

    Slyusarchuk, Vasilii E

    2012-05-31

    Conditions for the existence of bounded and periodic solutions of the nonlinear functional differential equation d{sup m}x(t)/dt{sup m} + (Fx)(t) = h(t), t element of R, are presented, involving local linear approximations to the operator F. Bibliography: 23 titles.

  6. Maximum Likelihood Estimation of Nonlinear Structural Equation Models.

    ERIC Educational Resources Information Center

    Lee, Sik-Yum; Zhu, Hong-Tu

    2002-01-01

    Developed an EM type algorithm for maximum likelihood estimation of a general nonlinear structural equation model in which the E-step is completed by a Metropolis-Hastings algorithm. Illustrated the methodology with results from a simulation study and two real examples using data from previous studies. (SLD)

  7. Model Comparison of Nonlinear Structural Equation Models with Fixed Covariates.

    ERIC Educational Resources Information Center

    Lee, Sik-Yum; Song, Xin-Yuan

    2003-01-01

    Proposed a new nonlinear structural equation model with fixed covariates to deal with some complicated substantive theory and developed a Bayesian path sampling procedure for model comparison. Illustrated the approach with an illustrative example using data from an international study. (SLD)

  8. Local Influence Analysis of Nonlinear Structural Equation Models

    ERIC Educational Resources Information Center

    Lee, Sik-Yum; Tang, Nian-Sheng

    2004-01-01

    By regarding the latent random vectors as hypothetical missing data and based on the conditional expectation of the complete-data log-likelihood function in the EM algorithm, we investigate assessment of local influence of various perturbation schemes in a nonlinear structural equation model. The basic building blocks of local influence analysis…

  9. Painleve analysis for a nonlinear Schroedinger equation in three dimensions

    SciTech Connect

    Chowdhury, A.R.; Chanda, P.K.

    1987-09-01

    A Painleve analysis is performed for the nonlinear Schroedinger equation in (2 + 1) dimensions following the methodology of Weiss et al. simplified in the sense of Kruskal. At least for one branch it is found that the required number of arbitrary functions (as demanded by the Cauchy-Kovalevskaya theorem) exists, signalling complete integrability.

  10. An Efficient Numerical Approach for Nonlinear Fokker-Planck equations

    NASA Astrophysics Data System (ADS)

    Otten, Dustin; Vedula, Prakash

    2009-03-01

    Fokker-Planck equations which are nonlinear with respect to their probability densities that occur in many nonequilibrium systems relevant to mean field interaction models, plasmas, classical fermions and bosons can be challenging to solve numerically. To address some underlying challenges in obtaining numerical solutions, we propose a quadrature based moment method for efficient and accurate determination of transient (and stationary) solutions of nonlinear Fokker-Planck equations. In this approach the distribution function is represented as a collection of Dirac delta functions with corresponding quadrature weights and locations, that are in turn determined from constraints based on evolution of generalized moments. Properties of the distribution function can be obtained by solution of transport equations for quadrature weights and locations. We will apply this computational approach to study a wide range of problems, including the Desai-Zwanzig Model (for nonlinear muscular contraction) and multivariate nonlinear Fokker-Planck equations describing classical fermions and bosons, and will also demonstrate good agreement with results obtained from Monte Carlo and other standard numerical methods.

  11. Forced oscillations of nonlinear damped equation of suspended string

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Masaru; Nagai, Tohru; Matsukane, Katsuya

    2008-06-01

    We shall study the existence of time-periodic solutions of nonlinear damped equation of suspended string to which a periodic nonlinear force works. We shall be conterned with weak, strong and classical time-periodic solutions and also the regularity of the solutions. To formulate our results, we shall take suitable weighted Sobolev-type spaces introduced by [M. Yamaguchi, Almost periodic oscillations of suspended string under quasiperiodic linear force, J. Math. Anal. Appl. 303 (2) (2005) 643-660; M. Yamaguchi, Infinitely many time-periodic solutions of nonlinear equation of suspended string, Funkcial. Ekvac., in press]. We shall study properties of the function spaces and show inequalities on the function spaces. To show our results we shall apply the Schauder fixed point theorem and the fixed point continuation theorem in the function spaces.

  12. Predicting stabilizing mutations in proteins using Poisson-Boltzmann based models: study of unfolded state ensemble models and development of a successful binary classifier based on residue interaction energies.

    PubMed

    Estrada, Jorge; Echenique, Pablo; Sancho, Javier

    2015-12-14

    In many cases the stability of a protein has to be increased to permit its biotechnological use. Rational methods of protein stabilization based on optimizing electrostatic interactions have provided some fine successful predictions. However, the precise calculation of stabilization energies remains challenging, one reason being that the electrostatic effects on the unfolded state are often neglected. We have explored here the feasibility of incorporating Poisson-Boltzmann model electrostatic calculations performed on representations of the unfolded state as large ensembles of geometrically optimized conformations calculated using the ProtSA server. Using a data set of 80 electrostatic mutations experimentally tested in two-state proteins, the predictive performance of several such models has been compared to that of a simple one that considers an unfolded structure of non-interacting residues. The unfolded ensemble models, while showing correlation between the predicted stabilization values and the experimental ones, are worse than the simple model, suggesting that the ensembles do not capture well the energetics of the unfolded state. A more attainable goal is classifying potential mutations as either stabilizing or non-stabilizing, rather than accurately calculating their stabilization energies. To implement a fast classification method that can assist in selecting stabilizing mutations, we have used a much simpler electrostatic model based only on the native structure and have determined its precision using different stabilizing energy thresholds. The binary classifier developed finds 7 true stabilizing mutants out of every 10 proposed candidates and can be used as a robust tool to propose stabilizing mutations. PMID:26530878

  13. Optimal analytic method for the nonlinear Hasegawa-Mima equation

    NASA Astrophysics Data System (ADS)

    Baxter, Mathew; Van Gorder, Robert A.; Vajravelu, Kuppalapalle

    2014-05-01

    The Hasegawa-Mima equation is a nonlinear partial differential equation that describes the electric potential due to a drift wave in a plasma. In the present paper, we apply the method of homotopy analysis to a slightly more general Hasegawa-Mima equation, which accounts for hyper-viscous damping or viscous dissipation. First, we outline the method for the general initial/boundary value problem over a compact rectangular spatial domain. We use a two-stage method, where both the convergence control parameter and the auxiliary linear operator are optimally selected to minimize the residual error due to the approximation. To do the latter, we consider a family of operators parameterized by a constant which gives the decay rate of the solutions. After outlining the general method, we consider a number of concrete examples in order to demonstrate the utility of this approach. The results enable us to study properties of the initial/boundary value problem for the generalized Hasegawa-Mima equation. In several cases considered, we are able to obtain solutions with extremely small residual errors after relatively few iterations are computed (residual errors on the order of 10-15 are found in multiple cases after only three iterations). The results demonstrate that selecting a parameterized auxiliary linear operator can be extremely useful for minimizing residual errors when used concurrently with the optimal homotopy analysis method, suggesting that this approach can prove useful for a number of nonlinear partial differential equations arising in physics and nonlinear mechanics.

  14. Some mathematical aspects of the correspondence between the generalized nonlinear Schroedinger equation and the generalized Korteweg-de Vries equation

    SciTech Connect

    Fedele, Renato; De Nicola, Sergio; Grecu, Dan; Visinescu, Anca; Shukla, Padma K.

    2009-11-10

    A review of the recent studies on the correspondence between a wide family of the generalized nonlinear Schroedinger equations and a wide family of the generalized Korteweg-de Vries equations is presented. It was constructed some years ago within the framework of a recently-developed approach based on the Madelung's fluid representation of the generalized nonlinear Schroedinger equation. The present analysis extends the former approach, developed for nonlinear Schroedinger equation with a nonlinear term proportional to a multiplicative operator, to the cases of derivative operators and the ones corresponding to cylindrical nonlinear Schroedinger equations.

  15. Shock-wave structure using nonlinear model Boltzmann equations.

    NASA Technical Reports Server (NTRS)

    Segal, B. M.; Ferziger, J. H.

    1972-01-01

    The structure of strong plane shock waves in a perfect monatomic gas was studied using four nonlinear models of the Boltzmann equation. The models involved the use of a simplified collision operator with velocity-independent collision frequency, in place of the complicated Boltzmann collision operator. The models employed were the BGK and ellipsoidal models developed by earlier authors, and the polynomial and trimodal gain function models developed during the work. An exact set of moment equations was derived for the density, velocity, temperature, viscous stress, and heat flux within the shock. This set was reduced to a pair of coupled nonlinear integral equations and solved using specially adapted numerical techniques. A new and simple Gauss-Seidel iteration was developed during the work and found to be as efficient as the best earlier iteration methods.

  16. Transformation matrices between non-linear and linear differential equations

    NASA Technical Reports Server (NTRS)

    Sartain, R. L.

    1983-01-01

    In the linearization of systems of non-linear differential equations, those systems which can be exactly transformed into the second order linear differential equation Y"-AY'-BY=0 where Y, Y', and Y" are n x 1 vectors and A and B are constant n x n matrices of real numbers were considered. The 2n x 2n matrix was used to transform the above matrix equation into the first order matrix equation X' = MX. Specially the matrix M and the conditions which will diagonalize or triangularize M were studied. Transformation matrices P and P sub -1 were used to accomplish this diagonalization or triangularization to return to the solution of the second order matrix differential equation system from the first order system.

  17. Phase space lattices and integrable nonlinear wave equations

    NASA Astrophysics Data System (ADS)

    Tracy, Eugene; Zobin, Nahum

    2003-10-01

    Nonlinear wave equations in fluids and plasmas that are integrable by Inverse Scattering Theory (IST), such as the Korteweg-deVries and nonlinear Schrodinger equations, are known to be infinite-dimensional Hamiltonian systems [1]. These are of interest physically because they predict new phenomena not present in linear wave theories, such as solitons and rogue waves. The IST method provides solutions of these equations in terms of a special class of functions called Riemann theta functions. The usual approach to the theory of theta functions tends to obscure the underlying phase space structure. A theory due to Mumford and Igusa [2], however shows that the theta functions arise naturally in the study of phase space lattices. We will describe this theory, as well as potential applications to nonlinear signal processing and the statistical theory of nonlinear waves. 1] , S. Novikov, S. V. Manakov, L. P. Pitaevskii and V. E. Zakharov, Theory of solitons: the inverse scattering method (Consultants Bureau, New York, 1984). 2] D. Mumford, Tata lectures on theta, Vols. I-III (Birkhauser); J. Igusa, Theta functions (Springer-Verlag, New York, 1972).

  18. An adaptive grid algorithm for one-dimensional nonlinear equations

    NASA Technical Reports Server (NTRS)

    Gutierrez, William E.; Hills, Richard G.

    1990-01-01

    Richards' equation, which models the flow of liquid through unsaturated porous media, is highly nonlinear and difficult to solve. Step gradients in the field variables require the use of fine grids and small time step sizes. The numerical instabilities caused by the nonlinearities often require the use of iterative methods such as Picard or Newton interation. These difficulties result in large CPU requirements in solving Richards equation. With this in mind, adaptive and multigrid methods are investigated for use with nonlinear equations such as Richards' equation. Attention is focused on one-dimensional transient problems. To investigate the use of multigrid and adaptive grid methods, a series of problems are studied. First, a multigrid program is developed and used to solve an ordinary differential equation, demonstrating the efficiency with which low and high frequency errors are smoothed out. The multigrid algorithm and an adaptive grid algorithm is used to solve one-dimensional transient partial differential equations, such as the diffusive and convective-diffusion equations. The performance of these programs are compared to that of the Gauss-Seidel and tridiagonal methods. The adaptive and multigrid schemes outperformed the Gauss-Seidel algorithm, but were not as fast as the tridiagonal method. The adaptive grid scheme solved the problems slightly faster than the multigrid method. To solve nonlinear problems, Picard iterations are introduced into the adaptive grid and tridiagonal methods. Burgers' equation is used as a test problem for the two algorithms. Both methods obtain solutions of comparable accuracy for similar time increments. For the Burgers' equation, the adaptive grid method finds the solution approximately three times faster than the tridiagonal method. Finally, both schemes are used to solve the water content formulation of the Richards' equation. For this problem, the adaptive grid method obtains a more accurate solution in fewer work units and

  19. Travelling Waves for the Nonlinear Schrödinger Equation with General Nonlinearity in Dimension Two

    NASA Astrophysics Data System (ADS)

    Chiron, David; Scheid, Claire

    2016-02-01

    We investigate numerically the two-dimensional travelling waves of the nonlinear Schrödinger equation for a general nonlinearity and with nonzero condition at infinity. In particular, we are interested in the energy-momentum diagrams. We propose a numerical strategy based on the variational structure of the equation. The key point is to characterize the saddle points of the action as minimizers of another functional that allows us to use a gradient flow. We combine this approach with a continuation method in speed in order to obtain the full range of velocities. Through various examples, we show that even though the nonlinearity has the same behaviour as the well-known Gross-Pitaevskii nonlinearity, the qualitative properties of the travelling waves may be extremely different. For instance, we observe cusps, a modified KP-I asymptotic in the transonic limit, various multiplicity results and "one-dimensional spreading" phenomena.

  20. Dielectric Decrement Effects on Nonlinear Electrophoresis of Ideally Polarizable Particles

    NASA Astrophysics Data System (ADS)

    Moran, Jeffrey L.; Chan, Wai Hong Ronald; Buie, Cullen R.; Figliuzzi, Bruno

    2014-11-01

    We present numerical simulations of nonlinear electrophoresis of ideally polarizable particles that specifically include the effects of a spatially non-uniform dielectric permittivity near the particle surface. Models for this dielectric decrement phenomenon have been developed by several authors, including Ben-Yaakov et al. [J. Phys.: Condens. Matter 2009] Hatlo et al. [EPL 2012], and Zhao & Zhai [JFM 2013]. We extend this work to ideally polarizable particles and include the effects of surface conduction and advective transport in the electric double layer. By numerically solving for the coupled velocity field, electric potential, and ionic concentration distributions in the bulk solution surrounding the particle, we demonstrate that the dielectric decrement model predicts ionic saturation around the particle and thus physical implications that resemble those resulting from the steric model developed by Kilic et al. [PRE 2007], albeit with differences that reflect the nonlinearity of the modified Poisson-Boltzmann equation. In addition, we develop a generalized condensed layer model that approximates both the steric and dielectric decrement models in the limits of strong electric fields and negligible surface conduction to obtain more physical insights into these models. We demonstrate that the mobility in both models asymptotically scales as the square root of the electric field at high fields, recovering the result of Bazant et al. [Adv. Colloid Interface Sci. 2009].

  1. Recent extensions to the OMNI language to allow nonlinear equation and an interface to a nonlinear solver

    SciTech Connect

    Golush, W.G.

    1994-12-31

    Nonlinear equations are expressed using a new OMNI statement FORM NLE. This allows OMNI Constructs, Classes, Tables, and New Variables to be used in nonlinear equations. The interface passes the nonlinear equations and symbolic derivatives to a general nonlinear solver. After optimization, the row and column activities of the solution are written to an OMNI Standard Solution File. Reports are written from this file using the OMNI FORM LINE report writer. The interface will be illustrated with an example of a nonlinear model written in OMNI and solved using the MINOS nonlinear solver.

  2. Multi-soliton rational solutions for some nonlinear evolution equations

    NASA Astrophysics Data System (ADS)

    Osman, Mohamed S.

    2016-01-01

    The Korteweg-de Vries equation (KdV) and the (2+ 1)-dimensional Nizhnik-Novikov-Veselov system (NNV) are presented. Multi-soliton rational solutions of these equations are obtained via the generalized unified method. The analysis emphasizes the power of this method and its capability of handling completely (or partially) integrable equations. Compared with Hirota's method and the inverse scattering method, the proposed method gives more general exact multi-wave solutions without much additional effort. The results show that, by virtue of symbolic computation, the generalized unified method may provide us with a straightforward and effective mathematical tool for seeking multi-soliton rational solutions for solving many nonlinear evolution equations arising in different branches of sciences.

  3. Numerical solution of control problems governed by nonlinear differential equations

    SciTech Connect

    Heinkenschloss, M.

    1994-12-31

    In this presentation the author investigates an iterative method for the solution of optimal control problems. These problems are formulated as constrained optimization problems with constraints arising from the state equation and in the form of bound constraints on the control. The method for the solution of these problems uses the special structure of the problem arising from the bound constraint and the state equation. It is derived from SQP methods and projected Newton methods and combines the advantages of both methods. The bound constraint is satisfied by all iterates using a projection, the nonlinear state equation is satisfied in the limit. Only a linearized state equation has to be solved in every iteration. The solution of the linearized problems are done using multilevel methods and GMRES.

  4. Modified non-linear Burgers' equations and cosmic ray shocks

    NASA Technical Reports Server (NTRS)

    Zank, G. P.; Webb, G. M.; Mckenzie, J. F.

    1988-01-01

    A reductive perturbation scheme is used to derive a generalized non-linear Burgers' equation, which includes the effects of dispersion, in the long wavelength regime for the two-fluid hydrodynamical model used to describe cosmic ray acceleration by the first-order Fermi process in astrophysical shocks. The generalized Burger's equation is derived for both relativistic and non-relativistic cosmic ray shocks, and describes the time evolution of weak shocks in the theory of diffusive shock acceleration. The inclusion of dispersive effects modifies the phase velocity of the shock obtained from the lower order non-linear Burger's equation through the introduction of higher order terms from the long wavelength dispersion equation. The travelling wave solution of the generalized Burgers' equation for a single shock shows that larger cosmic ray pressures result in broader shock transitions. The results for relativistic shocks show a steepening of the shock as the shock speed approaches the relativistic cosmic ray sound speed. The dependence of the shock speed on the cosmic ray pressure is also discussed.

  5. Solving nonlinear evolution equation system using two different methods

    NASA Astrophysics Data System (ADS)

    Kaplan, Melike; Bekir, Ahmet; Ozer, Mehmet N.

    2015-12-01

    This paper deals with constructing more general exact solutions of the coupled Higgs equation by using the (G0/G, 1/G)-expansion and (1/G0)-expansion methods. The obtained solutions are expressed by three types of functions: hyperbolic, trigonometric and rational functions with free parameters. It has been shown that the suggested methods are productive and will be used to solve nonlinear partial differential equations in applied mathematics and engineering. Throughout the paper, all the calculations are made with the aid of the Maple software.

  6. Quadratic nonlinear Klein-Gordon equation in one dimension

    NASA Astrophysics Data System (ADS)

    Hayashi, Nakao; Naumkin, Pavel I.

    2012-10-01

    We study the initial value problem for the quadratic nonlinear Klein-Gordon equation vtt + v - vxx = λv2, t ∈ R, x ∈ R, with initial conditions v(0, x) = v0(x), vt(0, x) = v1(x), x ∈ R, where v0 and v1 are real-valued functions, λ ∈ R. Using the method of normal forms of Shatah ["Normal forms and quadratic nonlinear Klein-Gordon equations," Commun. Pure Appl. Math. 38, 685-696 (1985)], we obtain a sharp asymptotic behavior of small solutions without the condition of a compact support on the initial data, which was assumed in the previous work of J.-M. Delort ["Existence globale et comportement asymptotique pour l'équation de Klein-Gordon quasi-linéaire á données petites en dimension 1," Ann. Sci. Ec. Normale Super. 34(4), 1-61 (2001)].

  7. Numerical study of fractional nonlinear Schrödinger equations

    PubMed Central

    Klein, Christian; Sparber, Christof; Markowich, Peter

    2014-01-01

    Using a Fourier spectral method, we provide a detailed numerical investigation of dispersive Schrödinger-type equations involving a fractional Laplacian in an one-dimensional case. By an appropriate choice of the dispersive exponent, both mass and energy sub- and supercritical regimes can be identified. This allows us to study the possibility of finite time blow-up versus global existence, the nature of the blow-up, the stability and instability of nonlinear ground states and the long-time dynamics of solutions. The latter is also studied in a semiclassical setting. Moreover, we numerically construct ground state solutions of the fractional nonlinear Schrödinger equation. PMID:25484604

  8. Unitary qubit extremely parallelized algorithms for coupled nonlinear Schrodinger equations

    NASA Astrophysics Data System (ADS)

    Oganesov, Armen; Flint, Chris; Vahala, George; Vahala, Linda; Yepez, Jeffrey; Soe, Min

    2015-11-01

    The nonlinear Schrodinger equation (NLS) is a ubiquitous equation occurring in plasma physics, nonlinear optics and in Bose Einstein condensates. Viewed from the BEC standpoint of phase transitions, the wave function is the order parameter and topological defects in that manifold are simply the vortices, which for a scalar NLS have quantized circulation. In multi-species NLS the topological nature of the vortices are radically different with some classes of vortices no longer having quantized circulation as in classical turbulence. Moreover, some of the vortex equivalence classes need no longer be Abelian. This strongly effects the permitted vortex reconnections. The effect of these structures on the spectral properties of the ensuing turbulence will be investigated. Our 3D algorithm is based on a novel unitary qubit lattice scheme that is ideally parallelized - tested up to 780 000 cores on Mira. This scheme is mesoscopic (like lattice Boltzmann), but fully unitary (unlike LB). Supported by NSF, DoD.

  9. Numerical study of fractional nonlinear Schrödinger equations.

    PubMed

    Klein, Christian; Sparber, Christof; Markowich, Peter

    2014-12-01

    Using a Fourier spectral method, we provide a detailed numerical investigation of dispersive Schrödinger-type equations involving a fractional Laplacian in an one-dimensional case. By an appropriate choice of the dispersive exponent, both mass and energy sub- and supercritical regimes can be identified. This allows us to study the possibility of finite time blow-up versus global existence, the nature of the blow-up, the stability and instability of nonlinear ground states and the long-time dynamics of solutions. The latter is also studied in a semiclassical setting. Moreover, we numerically construct ground state solutions of the fractional nonlinear Schrödinger equation. PMID:25484604

  10. Nonlinear Generalized Hydrodynamic Wave Equations in Strongly Coupled Dusty Plasmas

    SciTech Connect

    Veeresha, B. M.; Sen, A.; Kaw, P. K.

    2008-09-07

    A set of nonlinear equations for the study of low frequency waves in a strongly coupled dusty plasma medium is derived using the phenomenological generalized hydrodynamic (GH) model and is used to study the modulational stability of dust acoustic waves to parallel perturbations. Dust compressibility contributions arising from strong Coulomb coupling effects are found to introduce significant modifications in the threshold and range of the instability domain.

  11. Fast neural solution of a nonlinear wave equation

    NASA Technical Reports Server (NTRS)

    Toomarian, Nikzad; Barhen, Jacob

    1992-01-01

    A neural algorithm for rapidly simulating a certain class of nonlinear wave phenomena using analog VLSI neural hardware is presented and applied to the Korteweg-de Vries partial differential equation. The corresponding neural architecture is obtained from a pseudospectral representation of the spatial dependence, along with a leap-frog scheme for the temporal evolution. Numerical simulations demonstrated the robustness of the proposed approach.

  12. Approximate solutions for non-linear iterative fractional differential equations

    NASA Astrophysics Data System (ADS)

    Damag, Faten H.; Kiliçman, Adem; Ibrahim, Rabha W.

    2016-06-01

    This paper establishes approximate solution for non-linear iterative fractional differential equations: d/γv (s ) d sγ =ℵ (s ,v ,v (v )), where γ ∈ (0, 1], s ∈ I := [0, 1]. Our method is based on some convergence tools for analytic solution in a connected region. We show that the suggested solution is unique and convergent by some well known geometric functions.

  13. Inhomogeneous critical nonlinear Schroedinger equations with a harmonic potential

    SciTech Connect

    Cao Daomin; Han Pigong

    2010-04-15

    In this paper, we study the Cauchy problem of the inhomogeneous nonlinear Schroedinger equation with a harmonic potential: i{partial_derivative}{sub t}u=-div(f(x){nabla}u)+|x|{sup 2}u-k(x)|u|{sup 4/N}u, x is an element of R{sup N}, N{>=}1, which models the remarkable Bose-Einstein condensation. We discuss the existence and nonexistence results and investigate the limiting profile of blow-up solutions with critical mass.

  14. Parallel iterative methods for sparse linear and nonlinear equations

    NASA Technical Reports Server (NTRS)

    Saad, Youcef

    1989-01-01

    As three-dimensional models are gaining importance, iterative methods will become almost mandatory. Among these, preconditioned Krylov subspace methods have been viewed as the most efficient and reliable, when solving linear as well as nonlinear systems of equations. There has been several different approaches taken to adapt iterative methods for supercomputers. Some of these approaches are discussed and the methods that deal more specifically with general unstructured sparse matrices, such as those arising from finite element methods, are emphasized.

  15. Symmetries and reductions of order for certain nonlinear third- and second-order differential equations with arbitrary nonlinearity

    NASA Astrophysics Data System (ADS)

    Tamizhmani, K. M.; Krishnakumar, K.; Leach, P. G. L.

    2015-11-01

    We examine the reductions of the order of certain third- and second-order nonlinear equations with arbitrary nonlinearity through their symmetries and some appropriate transformations. We use the folding transformation which enables one to change from a nonlinearity with an arbitrary exponent to a nonlinearity with a specific numerical exponent.

  16. Improved algorithm for solving nonlinear parabolized stability equations

    NASA Astrophysics Data System (ADS)

    Zhao, Lei; Zhang, Cun-bo; Liu, Jian-xin; Luo, Ji-sheng

    2016-08-01

    Due to its high computational efficiency and ability to consider nonparallel and nonlinear effects, nonlinear parabolized stability equations (NPSE) approach has been widely used to study the stability and transition mechanisms. However, it often diverges in hypersonic boundary layers when the amplitude of disturbance reaches a certain level. In this study, an improved algorithm for solving NPSE is developed. In this algorithm, the mean flow distortion is included into the linear operator instead of into the nonlinear forcing terms in NPSE. An under-relaxation factor for computing the nonlinear terms is introduced during the iteration process to guarantee the robustness of the algorithm. Two case studies, the nonlinear development of stationary crossflow vortices and the fundamental resonance of the second mode disturbance in hypersonic boundary layers, are presented to validate the proposed algorithm for NPSE. Results from direct numerical simulation (DNS) are regarded as the baseline for comparison. Good agreement can be found between the proposed algorithm and DNS, which indicates the great potential of the proposed method on studying the crossflow and streamwise instability in hypersonic boundary layers. Project supported by the National Natural Science Foundation of China (Grant Nos. 11332007 and 11402167).

  17. Rogue wave solutions for a generalized nonautonomous nonlinear equation in a nonlinear inhomogeneous fiber

    NASA Astrophysics Data System (ADS)

    Xie, Xi-Yang; Tian, Bo; Wang, Yu-Feng; Sun, Ya; Jiang, Yan

    2015-11-01

    In this paper, we investigate a generalized nonautonomous nonlinear equation which describes the ultrashort optical pulse propagating in a nonlinear inhomogeneous fiber. By virtue of the generalized Darboux transformation, the first- and second-order rogue-wave solutions for the generalized nonautonomous nonlinear equation are obtained, under some variable-coefficient constraints. Properties of the first- and second-order rogue waves are graphically presented and analyzed: When the coefficients are all chosen as the constants, we can observe the some functions, the shapes of wave crests and troughs for the first- and second-order rogue waves change. Oscillating behaviors of the first- and second-order rogue waves are observed when the coefficients are the trigonometric functions.

  18. Equations for Nonlinear MHD Convection in Shearless Magnetic Systems

    SciTech Connect

    Pastukhov, V.P.

    2005-07-15

    A closed set of reduced dynamic equations is derived that describe nonlinear low-frequency flute MHD convection and resulting nondiffusive transport processes in weakly dissipative plasmas with closed or open magnetic field lines. The equations obtained make it possible to self-consistently simulate transport processes and the establishment of the self-consistent plasma temperature and density profiles for a large class of axisymmetric nonparaxial shearless magnetic devices: levitated dipole configurations, mirror systems, compact tori, etc. Reduced equations that are suitable for modeling the long-term evolution of the plasma on time scales comparable to the plasma lifetime are derived by the method of the adiabatic separation of fast and slow motions.

  19. Nonlinear electromagnetic gyrokinetic equations for rotating axisymmetric plasmas

    SciTech Connect

    Artun, M.; Tang, W.M.

    1994-03-01

    The influence of sheared equilibrium flows on the confinement properties of tokamak plasmas is a topic of much current interest. A proper theoretical foundation for the systematic kinetic analysis of this important problem has been provided here by presented the derivation of a set of nonlinear electromagnetic gyrokinetic equations applicable to low frequency microinstabilities in a rotating axisymmetric plasma. The subsonic rotation velocity considered is in the direction of symmetry with the angular rotation frequency being a function of the equilibrium magnetic flux surface. In accordance with experimental observations, the rotation profile is chosen to scale with the ion temperature. The results obtained represent the shear flow generalization of the earlier analysis by Frieman and Chen where such flows were not taken into account. In order to make it readily applicable to gyrokinetic particle simulations, this set of equations is cast in a phase-space-conserving continuity equation form.

  20. Multipulses of Nonlinearly Coupled Schrödinger Equations

    NASA Astrophysics Data System (ADS)

    Yew, Alice C.

    2001-06-01

    The capacity of coupled nonlinear Schrödinger (NLS) equations to support multipulse solutions (multibump solitary-waves) is investigated. A detailed analysis is undertaken for a system of quadratically coupled equations that describe the phenomena of second harmonic generation and parametric wave interaction in non-centrosymmetric optical materials. Utilising the framework of homoclinic bifurcation theory, and employing a Lyapunov-Schmidt reduction method developed by Hale, Lin, and Sandstede, a novel mechanism for the generation of multipulses is identified, which arises from a resonant semi-simple eigenvalue configuration of the linearised steady-state equations. Conditions for the existence of multipulses, as well as a description of their geometry, are derived from the analysis.

  1. Simulation of nonlinear Westervelt equation for the investigation of acoustic streaming and nonlinear propagation effects.

    PubMed

    Solovchuk, Maxim; Sheu, Tony W H; Thiriet, Marc

    2013-11-01

    This study investigates the influence of blood flow on temperature distribution during high-intensity focused ultrasound (HIFU) ablation of liver tumors. A three-dimensional acoustic-thermal-hydrodynamic coupling model is developed to compute the temperature field in the hepatic cancerous region. The model is based on the nonlinear Westervelt equation, bioheat equations for the perfused tissue and blood flow domains. The nonlinear Navier-Stokes equations are employed to describe the flow in large blood vessels. The effect of acoustic streaming is also taken into account in the present HIFU simulation study. A simulation of the Westervelt equation requires a prohibitively large amount of computer resources. Therefore a sixth-order accurate acoustic scheme in three-point stencil was developed for effectively solving the nonlinear wave equation. Results show that focused ultrasound beam with the peak intensity 2470 W/cm(2) can induce acoustic streaming velocities up to 75 cm/s in the vessel with a diameter of 3 mm. The predicted temperature difference for the cases considered with and without acoustic streaming effect is 13.5 °C or 81% on the blood vessel wall for the vein. Tumor necrosis was studied in a region close to major vessels. The theoretical feasibility to safely necrotize the tumors close to major hepatic arteries and veins was shown. PMID:24180802

  2. The method of patches for solving stiff nonlinear differential equations

    NASA Astrophysics Data System (ADS)

    Brydon, David Van George, Jr.

    1998-12-01

    This dissertation describes a new method for solving very stiff sets of ordinary differential equations. The basic idea is to replace the original nonlinear equations with a set of equally stiff equations that are piecewise linear, and therefore can be solved exactly. We demonstrate the value of the method on small systems of equations for which some other methods are inefficient or produce spurious solutions, estimate error bounds, and discuss extensions of the method to larger systems of equations and to partial differential equations. Putzer's method is developed in a novel way for efficient and accurate solution of dx/dt = Ax+b. The physical problem of interest is spatial pattern formation in open reaction-diffusion chemical systems, as studied in the experiments of Kyoung Lee, Harry Swinney, et al. I develop a new experiment model that agrees reasonably well with experimental results. I solve the model, applying the new method to the two-variable Gaspar- Showalter chemical kinetics in two space dimensions. Because of time and computer limitations, only preliminary pattern-formation results are achieved and reported.

  3. The truncation model of the derivative nonlinear Schroedinger equation

    SciTech Connect

    Sanchez-Arriaga, G.; Hada, T.; Nariyuki, Y.

    2009-04-15

    The derivative nonlinear Schroedinger (DNLS) equation is explored using a truncation model with three resonant traveling waves. In the conservative case, the system derives from a time-independent Hamiltonian function with only one degree of freedom and the solutions can be written using elliptic functions. In spite of its low dimensional order, the truncation model preserves some features from the DNLS equation. In particular, the modulational instability criterion fits with the existence of two hyperbolic fixed points joined by a heteroclinic orbit that forces the exchange of energy between the three waves. On the other hand, numerical integrations of the DNLS equation show that the truncation model fails when wave energy is increased or left-hand polarized modulational unstable modes are present. When dissipative and growth terms are added the system exhibits a very complex dynamics including appearance of several attractors, period doubling bifurcations leading to chaos as well as other nonlinear phenomenon. In this case, the validity of the truncation model depends on the strength of the dissipation and the kind of attractor investigated.

  4. Theoretical and numerical studies of nonlinear shell equations

    NASA Astrophysics Data System (ADS)

    Hermann, M.; Kaiser, D.; Schröder, M.

    1999-07-01

    We study the solution field M of a parameter dependent nonlinear two-point boundary value problem presented by Troger and Steindl [H. Troger, A. Steindl, Nonlinear Stability and Bifurcation Theory, Springer, Wien, New York, 1991]. This problem models the buckling of a thin-walled spherical shell under a uniform external static pressure. The boundary value problem is formulated as an abstract operator equation T( x, λ)=0 in appropriate Banach spaces. By exploiting the equivariance of T, we obtain detailed informations about the structure of M. These theoretical results are used to compute efficiently interesting parts of M with numerical standard techniques. Bifurcation diagrams, a stability diagram and pictures of deformed shells are presented.

  5. On the nonlinear Schrodinger equation with nonzero boundary conditions

    NASA Astrophysics Data System (ADS)

    Fagerstrom, Emily

    This thesis is concerned with the study of the nonlinear Schrodinger (NLS) equation, which is important both from a physical and a mathematical point of view. In physics, it is a universal model for the evolutions of weakly nonlinear dispersive wave trains. As such it appears in many physical contexts, such as optics, acoustics, plasmas, biology, etc. Mathematically, it is a completely integrable, infinite-dimensional Hamiltonian system, and possesses a surprisingly rich structure. This equation has been extensively studied in the last 50 years, but many important questions are still open. In particular, this thesis contains the following original contributions: NLS with real spectral singularities. First, the focusing NLS equation is considered with decaying initial conditions. This situation has been studied extensively before, but the assumption is almost always made that the scattering coefficients have no real zeros, and thus the scattering data had no poles on the real axis. However, it is easy to produce example potentials with this behavior. For example, by modifying parameters in Satsuma-Yajima's sech potential, or by choosing a "box" potential with a particular area, one can obtain corresponding scattering entries with real zeros. The inverse scattering transform can be implemented by formulating the modified Jost eigenfunctions and the scattering data as a Riemann Hilbert problem. But it can also be formulated by using integral kernels. Doing so produces the Gelf'and-Levitan-Marchenko (GLM) equations. Solving these integral equations requires integrating an expression containing the reflection coefficient over the real axis. Under the usual assumption, the reflection coefficient has no poles on the real axis. In general, the integration contour cannot be deformed to avoid poles, because the reflection coefficient may not admit analytic extension off the real axis. Here it is shown that the GLM equations may be (uniquely) solved using a principal value

  6. Vortex Solutions of the Defocusing Discrete Nonlinear Schroedinger Equation

    SciTech Connect

    Cuevas, J.; Kevrekidis, P. G.; Law, K. J. H.

    2009-09-09

    We consider the existence, stability and dynamical evolution of dark vortex states in the two-dimensional defocusing DNLS equation, a model of interest both to atomic physics and to nonlinear optics. Our considerations are chiefly based on initializing such vortex configurations at the anti-continuum limit of zero coupling between adjacent sites, and continuing them to finite values of the coupling. Discrete defocusing vortices become unstable past a critical coupling strength and, subsequently feature a cascade of alternating stabilization-destabilization windows for any finite lattice.

  7. Pseudorecurrence and chaos of cubic-quintic nonlinear Schroedinger equation

    SciTech Connect

    Zhou, C.; Lai, C.H.

    1996-12-01

    Recurrence, pseudorecurrence, and chaotic solutions for a continuum Hamiltonian system in which there exist spatial patterns of solitary wave structures are investigated using the nonlinear Schrodinger equation (NSE) with cubic and quintic terms. The theoretical analyses indicate that there may exist Birkhoff`s recurrence for the arbitrary parameter values. The numerical experiments show that there may be Fermi-Pasta-Ulam (FPU) recurrence, pseudorecurrence, and chaos when different initial conditions are chosen. The fact that the system energy is effectively shared by finite Fourier modes suggests that it may be possible to describe the continuum system in terms of some effective degrees of freedom.

  8. Superposition of elliptic functions as solutions for a large number of nonlinear equations

    SciTech Connect

    Khare, Avinash; Saxena, Avadh

    2014-03-15

    For a large number of nonlinear equations, both discrete and continuum, we demonstrate a kind of linear superposition. We show that whenever a nonlinear equation admits solutions in terms of both Jacobi elliptic functions cn(x, m) and dn(x, m) with modulus m, then it also admits solutions in terms of their sum as well as difference. We have checked this in the case of several nonlinear equations such as the nonlinear Schrödinger equation, MKdV, a mixed KdV-MKdV system, a mixed quadratic-cubic nonlinear Schrödinger equation, the Ablowitz-Ladik equation, the saturable nonlinear Schrödinger equation, λϕ{sup 4}, the discrete MKdV as well as for several coupled field equations. Further, for a large number of nonlinear equations, we show that whenever a nonlinear equation admits a periodic solution in terms of dn{sup 2}(x, m), it also admits solutions in terms of dn {sup 2}(x,m)±√(m) cn (x,m) dn (x,m), even though cn(x, m)dn(x, m) is not a solution of these nonlinear equations. Finally, we also obtain superposed solutions of various forms for several coupled nonlinear equations.

  9. Difference equation state approximations for nonlinear hereditary control problems

    NASA Technical Reports Server (NTRS)

    Rosen, I. G.

    1984-01-01

    Discrete approximation schemes for the solution of nonlinear hereditary control problems are constructed. The methods involve approximation by a sequence of optimal control problems in which the original infinite dimensional state equation has been approximated by a finite dimensional discrete difference equation. Convergence of the state approximations is argued using linear semigroup theory and is then used to demonstrate that solutions to the approximating optimal control problems in some sense approximate solutions to the original control problem. Two schemes, one based upon piecewise constant approximation, and the other involving spline functions are discussed. Numerical results are presented, analyzed and used to compare the schemes to other available approximation methods for the solution of hereditary control problems. Previously announced in STAR as N83-33589

  10. Difference equation state approximations for nonlinear hereditary control problems

    NASA Technical Reports Server (NTRS)

    Rosen, I. G.

    1982-01-01

    Discrete approximation schemes for the solution of nonlinear hereditary control problems are constructed. The methods involve approximation by a sequence of optimal control problems in which the original infinite dimensional state equation has been approximated by a finite dimensional discrete difference equation. Convergence of the state approximations is argued using linear semigroup theory and is then used to demonstrate that solutions to the approximating optimal control problems in some sense approximate solutions to the original control problem. Two schemes, one based upon piecewise constant approximation, and the other involving spline functions are discussed. Numerical results are presented, analyzed and used to compare the schemes to other available approximation methods for the solution of hereditary control problems.

  11. Stochastic Computational Approach for Complex Nonlinear Ordinary Differential Equations

    NASA Astrophysics Data System (ADS)

    Junaid, Ali Khan; Muhammad, Asif Zahoor Raja; Ijaz Mansoor, Qureshi

    2011-02-01

    We present an evolutionary computational approach for the solution of nonlinear ordinary differential equations (NLODEs). The mathematical modeling is performed by a feed-forward artificial neural network that defines an unsupervised error. The training of these networks is achieved by a hybrid intelligent algorithm, a combination of global search with genetic algorithm and local search by pattern search technique. The applicability of this approach ranges from single order NLODEs, to systems of coupled differential equations. We illustrate the method by solving a variety of model problems and present comparisons with solutions obtained by exact methods and classical numerical methods. The solution is provided on a continuous finite time interval unlike the other numerical techniques with comparable accuracy. With the advent of neuroprocessors and digital signal processors the method becomes particularly interesting due to the expected essential gains in the execution speed.

  12. New variable separation solutions for the generalized nonlinear diffusion equations

    NASA Astrophysics Data System (ADS)

    Fei-Yu, Ji; Shun-Li, Zhang

    2016-03-01

    The functionally generalized variable separation of the generalized nonlinear diffusion equations ut = A(u,ux)uxx + B(u,ux) is studied by using the conditional Lie-Bäcklund symmetry method. The variant forms of the considered equations, which admit the corresponding conditional Lie-Bäcklund symmetries, are characterized. To construct functionally generalized separable solutions, several concrete examples defined on the exponential and trigonometric invariant subspaces are provided. Project supported by the National Natural Science Foundation of China (Grant Nos. 11371293, 11401458, and 11501438), the National Natural Science Foundation of China, Tian Yuan Special Foundation (Grant No. 11426169), and the Natural Science Basic Research Plan in Shaanxi Province of China (Grant No. 2015JQ1014).

  13. Nonlinear stability of oscillatory pulses in the parametric nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Chang, Paul A. C.; Promislow, Keith

    2007-03-01

    We extend the renormalization group method, developed for the study of pulse interaction in damped wave equations, to the study of oscillatory motion of supercritical pulses in the parametrically forced nonlinear Schrödinger equation (PNLS). We construct a global manifold which asymptotically attracts the flow into an {\\cal O}(r^4) neighbourhood in the H1 norm, where r is the amplitude of the internal oscillations. The oscillatory and translational dynamics of the pulses are rigorously recovered as a finite-dimensional flow on the manifold. The normal form for the projected dynamics of the oscillatory pulse shows that it is created in a supercritical Poincaré-Hopf bifurcation.

  14. A Procedure to Construct Exact Solutions of Nonlinear Fractional Differential Equations

    PubMed Central

    Güner, Özkan; Cevikel, Adem C.

    2014-01-01

    We use the fractional transformation to convert the nonlinear partial fractional differential equations with the nonlinear ordinary differential equations. The Exp-function method is extended to solve fractional partial differential equations in the sense of the modified Riemann-Liouville derivative. We apply the Exp-function method to the time fractional Sharma-Tasso-Olver equation, the space fractional Burgers equation, and the time fractional fmKdV equation. As a result, we obtain some new exact solutions. PMID:24737972

  15. Nonlinear periodic waves solutions of the nonlinear self-dual network equations

    SciTech Connect

    Laptev, Denis V. Bogdan, Mikhail M.

    2014-04-15

    The new classes of periodic solutions of nonlinear self-dual network equations describing the breather and soliton lattices, expressed in terms of the Jacobi elliptic functions have been obtained. The dependences of the frequencies on energy have been found. Numerical simulations of soliton lattice demonstrate their stability in the ideal lattice and the breather lattice instability in the dissipative lattice. However, the lifetime of such structures in the dissipative lattice can be extended through the application of ac driving terms.

  16. Charged anisotropic matter with linear or nonlinear equation of state

    SciTech Connect

    Varela, Victor; Rahaman, Farook; Ray, Saibal; Chakraborty, Koushik; Kalam, Mehedi

    2010-08-15

    Ivanov pointed out substantial analytical difficulties associated with self-gravitating, static, isotropic fluid spheres when pressure explicitly depends on matter density. Simplifications achieved with the introduction of electric charge were noticed as well. We deal with self-gravitating, charged, anisotropic fluids and get even more flexibility in solving the Einstein-Maxwell equations. In order to discuss analytical solutions we extend Krori and Barua's method to include pressure anisotropy and linear or nonlinear equations of state. The field equations are reduced to a system of three algebraic equations for the anisotropic pressures as well as matter and electrostatic energy densities. Attention is paid to compact sources characterized by positive matter density and positive radial pressure. Arising solutions satisfy the energy conditions of general relativity. Spheres with vanishing net charge contain fluid elements with unbounded proper charge density located at the fluid-vacuum interface. Notably the electric force acting on these fluid elements is finite, although the acting electric field is zero. Net charges can be huge (10{sup 19}C) and maximum electric field intensities are very large (10{sup 23}-10{sup 24} statvolt/cm) even in the case of zero net charge. Inward-directed fluid forces caused by pressure anisotropy may allow equilibrium configurations with larger net charges and electric field intensities than those found in studies of charged isotropic fluids. Links of these results with charged strange quark stars as well as models of dark matter including massive charged particles are highlighted. The van der Waals equation of state leading to matter densities constrained by cubic polynomial equations is briefly considered. The fundamental question of stability is left open.

  17. New Solutions of Three Nonlinear Space- and Time-Fractional Partial Differential Equations in Mathematical Physics

    NASA Astrophysics Data System (ADS)

    Yao, Ruo-Xia; Wang, Wei; Chen, Ting-Hua

    2014-11-01

    Motivated by the widely used ansätz method and starting from the modified Riemann—Liouville derivative together with a fractional complex transformation that can be utilized to transform nonlinear fractional partial differential equations to nonlinear ordinary differential equations, new types of exact traveling wave solutions to three important nonlinear space- and time-fractional partial differential equations are obtained simultaneously in terms of solutions of a Riccati equation. The results are new and first reported in this paper.

  18. Existence of dark solitons in a class of stationary nonlinear Schroedinger equations with periodically modulated nonlinearity and periodic asymptotics

    SciTech Connect

    Belmonte-Beitia, J.; Cuevas, J.

    2011-03-15

    In this paper, we give a proof of the existence of stationary dark soliton solutions or heteroclinic orbits of nonlinear equations of Schroedinger type with periodic inhomogeneous nonlinearity. The result is illustrated with examples of dark solitons for cubic and photorefractive nonlinearities.

  19. Numerical solution of the nonlinear Helmholtz equation using nonorthogonal expansions

    SciTech Connect

    Fibich, G. . E-mail: fibich@math.tau.ac.il; Tsynkov, S. . E-mail: tsynkov@math.ncsu.edu

    2005-11-20

    In [J. Comput. Phys. 171 (2001) 632-677] we developed a fourth-order numerical method for solving the nonlinear Helmholtz equation which governs the propagation of time-harmonic laser beams in media with a Kerr-type nonlinearity. A key element of the algorithm was a new nonlocal two-way artificial boundary condition (ABC), set in the direction of beam propagation. This two-way ABC provided for reflectionless propagation of the outgoing waves while also fully transmitting the given incoming beam at the boundaries of the computational domain. Altogether, the algorithm of [J. Comput. Phys. 171 (2001) 632-677] has allowed for a direct simulation of nonlinear self-focusing without neglecting nonparaxial effects and backscattering. To the best of our knowledge, this capacity has never been achieved previously in nonlinear optics. In the current paper, we propose an improved version of the algorithm. The principal innovation is that instead of using the Dirichlet boundary conditions in the direction orthogonal to that of the laser beam propagation, we now introduce Sommerfeld-type local radiation boundary conditions, which are constructed directly in the discrete framework. Numerically, implementation of the Sommerfeld conditions requires evaluation of eigenvalues and eigenvectors for a non-Hermitian matrix. Subsequently, the separation of variables, which is a key building block of the aforementioned nonlocal ABC, is implemented through an expansion with respect to the nonorthogonal basis of the eigenvectors. Numerical simulations show that the new algorithm offers a considerable improvement in its numerical performance, as well as in the range of physical phenomena that it is capable of simulating.

  20. Nonlinear Dirac equation in two-spinor form: Separation in static RW space-time. Nonlinear Dirac equation in RW space-time

    NASA Astrophysics Data System (ADS)

    Zecca, Antonio

    2016-02-01

    The Dirac equation with nonlinear terms induced by torsion is studied in Robertson-Walker (RW) space-time. An extension of a separation method of the equation, based on the Newman-Penrose formalism and previously applied to the nonlinear case, is considered. Accordingly the angular dependence of the Dirac spinor solution is separated, under a special assumption, in the general time-dependent RW metric. In the case of static RW metric the time dependence of the Dirac spinor factors out and one is left with a pair of two coupled nonlinear radial equations. The radial equations are disentangled by a suitable substitution of the spinor solution. The problem amounts then to the solution of a single second-order highly nonlinear differential equation. Some elementary considerations are done on the asymptotic behavior of the solution of the equation.

  1. Numerical solution of the nonlinear Schrödinger equation with wave operator on unbounded domains.

    PubMed

    Li, Hongwei; Wu, Xiaonan; Zhang, Jiwei

    2014-09-01

    In this paper, we generalize the unified approach proposed in Zhang et al. [J. Zhang, Z. Xu, and X. Wu, Phys. Rev. E 78, 026709 (2008)] to design the nonlinear local absorbing boundary conditions (LABCs) for the nonlinear Schrödinger equation with wave operator on unbounded domains. In fact, based on the methodology underlying the unified approach, we first split the original equation into two parts-the linear equation and the nonlinear equation-then achieve a one-way operator to approximate the linear equation to make the wave outgoing, and finally combine the one-way operator with the nonlinear equation to achieve the nonlinear LABCs. The stability of the equation with the nonlinear LABCs is also analyzed by introducing some auxiliary variables, and some numerical examples are presented to verify the accuracy and effectiveness of our proposed method. PMID:25314566

  2. On the dynamics of approximating schemes for dissipative nonlinear equations

    NASA Technical Reports Server (NTRS)

    Jones, Donald A.

    1993-01-01

    Since one can rarely write down the analytical solutions to nonlinear dissipative partial differential equations (PDE's), it is important to understand whether, and in what sense, the behavior of approximating schemes to these equations reflects the true dynamics of the original equations. Further, because standard error estimates between approximations of the true solutions coming from spectral methods - finite difference or finite element schemes, for example - and the exact solutions grow exponentially in time, this analysis provides little value in understanding the infinite time behavior of a given approximating scheme. The notion of the global attractor has been useful in quantifying the infinite time behavior of dissipative PDEs, such as the Navier-Stokes equations. Loosely speaking, the global attractor is all that remains of a sufficiently large bounded set in phase space mapped infinitely forward in time under the evolution of the PDE. Though the attractor has been shown to have some nice properties - it is compact, connected, and finite dimensional, for example - it is in general quite complicated. Nevertheless, the global attractor gives a way to understand how the infinite time behavior of approximating schemes such as the ones coming from a finite difference, finite element, or spectral method relates to that of the original PDE. Indeed, one can often show that such approximations also have a global attractor. We therefore only need to understand how the structure of the attractor for the PDE behaves under approximation. This is by no means a trivial task. Several interesting results have been obtained in this direction. However, we will not go into the details. We mention here that approximations generally lose information about the system no matter how accurate they are. There are examples that show certain parts of the attractor may be lost by arbitrary small perturbations of the original equations.

  3. Symmetry analysis and exact solutions for nonlinear equations in mathematical physics

    NASA Astrophysics Data System (ADS)

    Fushchich, Vil'gel'm. I.; Shtelen', Vladimir M.; Serov, Nikolai I.

    The book provides an overview of the current status of theoretical-algebraic methods in relation to linear and nonlinear multidimensional equations in mathematical and theoretical physics that are invariant with respect to the Poincare and Galilean groups and the wider Lie groups. Particular attention is given to the construction, in explicit form, of wide classes of accurate solutions to specific nonlinear partial differential equations, such as nonlinear wave equations for scalar, spinor, and vector fields, Young-Mills equations, and nonlinear quantum electrodynamic equations. A group-theory approach is used to analyze the classical three-body problem.

  4. A new method for parameter estimation in nonlinear dynamical equations

    NASA Astrophysics Data System (ADS)

    Wang, Liu; He, Wen-Ping; Liao, Le-Jian; Wan, Shi-Quan; He, Tao

    2015-01-01

    Parameter estimation is an important scientific problem in various fields such as chaos control, chaos synchronization and other mathematical models. In this paper, a new method for parameter estimation in nonlinear dynamical equations is proposed based on evolutionary modelling (EM). This will be achieved by utilizing the following characteristics of EM which includes self-organizing, adaptive and self-learning features which are inspired by biological natural selection, and mutation and genetic inheritance. The performance of the new method is demonstrated by using various numerical tests on the classic chaos model—Lorenz equation (Lorenz 1963). The results indicate that the new method can be used for fast and effective parameter estimation irrespective of whether partial parameters or all parameters are unknown in the Lorenz equation. Moreover, the new method has a good convergence rate. Noises are inevitable in observational data. The influence of observational noises on the performance of the presented method has been investigated. The results indicate that the strong noises, such as signal noise ratio (SNR) of 10 dB, have a larger influence on parameter estimation than the relatively weak noises. However, it is found that the precision of the parameter estimation remains acceptable for the relatively weak noises, e.g. SNR is 20 or 30 dB. It indicates that the presented method also has some anti-noise performance.

  5. Fully Electromagnetic Nonlinear Gyrokinetic Equations for Tokamak Edge Turbulence

    SciTech Connect

    Hahm, T. S.; Wang, Lu; Madsen, J.

    2008-08-01

    An energy conserving set of the fully electromagnetic nonlinear gyrokinetic Vlasov equation and Maxwell's equations, which is applicable to both L-mode turbulence with large amplitude and H-mode turbulence in the presence of high E Χ B shear has been derived. The phase-space action variational Lie perturbation method ensures the preservation of the conservation laws of the underlying Vlasov-Maxwell system. Our generalized ordering takes ρi<< ρθ¡ ~ LE ~ Lp << R (here ρi is the thermal ion Larmor radius and ρθ¡ = B/Bθ] ρi), as typically observed in the tokamak H-mode edge, with LE and Lp being the radial electric field and pressure gradient lengths. We take κ perpendicular to ρi ~ 1 for generality, and keep the relative fluctuation amplitudes eδφ /Τi ~ δΒ / Β up to the second order. Extending the electrostatic theory in the presence of high E Χ B shear [Hahm, Phys. Plasmas 3, 4658 (1996)], contributions of electromagnetic fluctuations to the particle charge density and current are explicitly evaluated via pull-back transformation from the gyrocenter distribution function in the gyrokinetic Maxwell's equation.

  6. Bayesian Analysis of Structural Equation Models with Nonlinear Covariates and Latent Variables

    ERIC Educational Resources Information Center

    Song, Xin-Yuan; Lee, Sik-Yum

    2006-01-01

    In this article, we formulate a nonlinear structural equation model (SEM) that can accommodate covariates in the measurement equation and nonlinear terms of covariates and exogenous latent variables in the structural equation. The covariates can come from continuous or discrete distributions. A Bayesian approach is developed to analyze the…

  7. Exact Multisoliton Solutions of General Nonlinear Schrödinger Equation with Derivative

    PubMed Central

    Li, Qi; Duan, Qiu-yuan; Zhang, Jian-bing

    2014-01-01

    Multisoliton solutions are derived for a general nonlinear Schrödinger equation with derivative by using Hirota's approach. The dynamics of one-soliton solution and two-soliton interactions are also illustrated. The considered equation can reduce to nonlinear Schrödinger equation with derivative as well as the solutions. PMID:25013858

  8. Stability of solitary waves in the nonlinear Dirac equation with arbitrary nonlinearity.

    PubMed

    Shao, Sihong; Quintero, Niurka R; Mertens, Franz G; Cooper, Fred; Khare, Avinash; Saxena, Avadh

    2014-09-01

    We consider the nonlinear Dirac equation in 1 + 1 dimension with scalar-scalar self interaction g(2)/κ+1(̅ΨΨ)(κ+1) and with mass m. Using the exact analytic form for rest frame solitary waves of the form Ψ(x,t)=ψ(x)e(-iωt) for arbitrary κ, we discuss the validity of various approaches to understanding stability that were successful for the nonlinear Schrödinger equation. In particular we study the validity of a version of Derrick's theorem and the criterion of Bogolubsky as well as the Vakhitov-Kolokolov criterion, and find that these criteria yield inconsistent results. Therefore, we study the stability by numerical simulations using a recently developed fourth-order operator splitting integration method. For different ranges of κ we map out the stability regimes in ω. We find that all stable nonlinear Dirac solitary waves have a one-hump profile, but not all one-hump waves are stable, while all waves with two humps are unstable. We also find that the time t(c), it takes for the instability to set in, is an exponentially increasing function of ω and t(c) decreases monotonically with increasing κ. PMID:25314512

  9. Code System for Solving Nonlinear Systems of Equations via the Gauss-Newton Method.

    Energy Science and Technology Software Center (ESTSC)

    1981-08-31

    Version 00 REGN solves nonlinear systems of numerical equations in difficult cases: high nonlinearity, poor initial approximations, a large number of unknowns, ill condition or degeneracy of a problem.

  10. Numerical Simulations of Light Bullets, Using The Full Vector, Time Dependent, Nonlinear Maxwell Equations

    NASA Technical Reports Server (NTRS)

    Goorjian, Peter M.; Silberberg, Yaron; Kwak, Dochan (Technical Monitor)

    1995-01-01

    This paper will present results in computational nonlinear optics. An algorithm will be described that solves the full vector nonlinear Maxwell's equations exactly without the approximations that we currently made. Present methods solve a reduced scalar wave equation, namely the nonlinear Schrodinger equation, and neglect the optical carrier. Also, results will be shown of calculations of 2-D electromagnetic nonlinear waves computed by directly integrating in time the nonlinear vector Maxwell's equations. The results will include simulations of 'light bullet' like pulses. Here diffraction and dispersion will be counteracted by nonlinear effects. The time integration efficiently implements linear and nonlinear convolutions for the electric polarization, and can take into account such quantum effects as Karr and Raman interactions. The present approach is robust and should permit modeling 2-D and 3-D optical soliton propagation, scattering, and switching directly from the full-vector Maxwell's equations.

  11. Numerical Simulations of Light Bullets, Using the Full Vector, Time Dependent, Nonlinear Maxwell Equations

    NASA Technical Reports Server (NTRS)

    Goorjian, Peter M.; Silberberg, Yaron; Kwak, Dochan (Technical Monitor)

    1994-01-01

    This paper will present results in computational nonlinear optics. An algorithm will be described that solves the full vector nonlinear Maxwell's equations exactly without the approximations that are currently made. Present methods solve a reduced scalar wave equation, namely the nonlinear Schrodinger equation, and neglect the optical carrier. Also, results will be shown of calculations of 2-D electromagnetic nonlinear waves computed by directly integrating in time the nonlinear vector Maxwell's equations. The results will include simulations of 'light bullet' like pulses. Here diffraction and dispersion will be counteracted by nonlinear effects. The time integration efficiently implements linear and nonlinear convolutions for the electric polarization, and can take into account such quantum effects as Kerr and Raman interactions. The present approach is robust and should permit modeling 2-D and 3-D optical soliton propagation, scattering, and switching directly from the full-vector Maxwell's equations.

  12. Numerical Simulations of Light Bullets, Using The Full Vector, Time Dependent, Nonlinear Maxwell Equations

    NASA Technical Reports Server (NTRS)

    Goorjian, Peter M.; Silberberg, Yaron; Kwak, Dochan (Technical Monitor)

    1994-01-01

    This paper will present results in computational nonlinear optics. An algorithm will be described that solves the full vector nonlinear Maxwell's equations exactly without the approximations that are currently made. Present methods solve a reduced scalar wave equation, namely the nonlinear Schrodinger equation, and neglect the optical carrier. Also, results will be shown of calculations of 2-D electromagnetic nonlinear waves computed by directly integrating in time the nonlinear vector Maxwell's equations. The results will include simulations of 'light bullet' like pulses. Here diffraction and dispersion will be counteracted by nonlinear effects. The time integration efficiently implements linear and nonlinear convolutions for the electric polarization, and can take into account such quantum effects as Kerr and Raman interactions. The present approach is robust and should permit modeling 2-D and 3-D optical soliton propagation, scattering, and switching directly from the full-vector Maxwell's equations.

  13. Nongauge bright soliton of the nonlinear Schrödinger (NLS) equation and a family of generalized NLS equations

    NASA Astrophysics Data System (ADS)

    Reyes, M. A.; Gutiérrez-Ruiz, D.; Mancas, S. C.; Rosu, H. C.

    2016-01-01

    We present an approach to the bright soliton solution of the nonlinear Schrödinger (NLS) equation from the standpoint of introducing a constant potential term in the equation. We discuss a “nongauge” bright soliton for which both the envelope and the phase depend only on the traveling variable. We also construct a family of generalized NLS equations with solitonic sechp solutions in the traveling variable and find an exact equivalence with other nonlinear equations, such as the Korteveg-de Vries (KdV) and Benjamin-Bona-Mahony (BBM) equations when p = 2.

  14. A note on improved F-expansion method combined with Riccati equation applied to nonlinear evolution equations

    PubMed Central

    Islam, Md. Shafiqul; Khan, Kamruzzaman; Akbar, M. Ali; Mastroberardino, Antonio

    2014-01-01

    The purpose of this article is to present an analytical method, namely the improved F-expansion method combined with the Riccati equation, for finding exact solutions of nonlinear evolution equations. The present method is capable of calculating all branches of solutions simultaneously, even if multiple solutions are very close and thus difficult to distinguish with numerical techniques. To verify the computational efficiency, we consider the modified Benjamin–Bona–Mahony equation and the modified Korteweg-de Vries equation. Our results reveal that the method is a very effective and straightforward way of formulating the exact travelling wave solutions of nonlinear wave equations arising in mathematical physics and engineering. PMID:26064530

  15. A globalization procedure for solving nonlinear systems of equations

    NASA Astrophysics Data System (ADS)

    Shi, Yixun

    1996-09-01

    A new globalization procedure for solving a nonlinear system of equationsF(x)D0 is proposed based on the idea of combining Newton step and the steepest descent step WITHIN each iteration. Starting with an arbitrary initial point, the procedure converges either to a solution of the system or to a local minimizer off(x)D1/2F(x)TF(x). Each iteration is chosen to be as close to a Newton step as possible and could be the Newton step itself. Asymptotically the Newton step will be taken in each iteration and thus the convergence is quadratic. Numerical experiments yield positive results. Further generalizations of this procedure are also discussed in this paper.

  16. Canonical equations of Hamilton for the nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Liang, Guo; Guo, Qi; Ren, Zhanmei

    2015-09-01

    We define two different systems of mathematical physics: the second order differential system (SODS) and the first order differential system (FODS). The Newton's second law of motion and the nonlinear Schrödinger equation (NLSE) are the exemplary SODS and FODS, respectively. We obtain a new kind of canonical equations of Hamilton (CEH), which exhibit some kind of symmetry in form and are formally different from the conventional CEH without symmetry [H. Goldstein, C. Poole, J. Safko, Classical Mechanics, third ed., Addison- Wesley, 2001]. We also prove that the number of the CEHs is equal to the number of the generalized coordinates for the FODS, but twice the number of the generalized coordinates for the SODS. We show that the FODS can only be expressed by the new CEH, but not introduced by the conventional CEH, while the SODS can be done by both the new and the conventional CEHs. As an example, we prove that the nonlinear Schrödinger equation can be expressed with the new CEH in a consistent way.

  17. Green functions and Langevin equations for nonlinear diffusion equations: A comment on ‘Markov processes, Hurst exponents, and nonlinear diffusion equations’ by Bassler et al.

    NASA Astrophysics Data System (ADS)

    Frank, T. D.

    2008-02-01

    We discuss two central claims made in the study by Bassler et al. [K.E. Bassler, G.H. Gunaratne, J.L. McCauley, Physica A 369 (2006) 343]. Bassler et al. claimed that Green functions and Langevin equations cannot be defined for nonlinear diffusion equations. In addition, they claimed that nonlinear diffusion equations are linear partial differential equations disguised as nonlinear ones. We review bottom-up and top-down approaches that have been used in the literature to derive Green functions for nonlinear diffusion equations and, in doing so, show that the first claim needs to be revised. We show that the second claim as well needs to be revised. To this end, we point out similarities and differences between non-autonomous linear Fokker-Planck equations and autonomous nonlinear Fokker-Planck equations. In this context, we raise the question whether Bassler et al.’s approach to financial markets is physically plausible because it necessitates the introduction of external traders and causes. Such external entities can easily be eliminated when taking self-organization principles and concepts of nonextensive thermostatistics into account and modeling financial processes by means of nonlinear Fokker-Planck equations.

  18. Hyperbolicity of the Nonlinear Models of Maxwell's Equations

    NASA Astrophysics Data System (ADS)

    Serre, Denis

    . We consider the class of nonlinear models of electromagnetism that has been described by Coleman & Dill [7]. A model is completely determined by its energy density W(B,D). Viewing the electromagnetic field (B,D) as a 3×2 matrix, we show that polyconvexity of W implies the local well-posedness of the Cauchy problem within smooth functions of class Hs with s>1+d/2. The method follows that designed by Dafermos in his book [9] in the context of nonlinear elasticity. We use the fact that B×D is a (vectorial, non-convex) entropy, and we enlarge the system from 6 to 9 equations. The resulting system admits an entropy (actually the energy) that is convex. Since the energy conservation law does not derive from the system of conservation laws itself (Faraday's and Ampère's laws), but also needs the compatibility relations divB=divD=0 (the latter may be relaxed in order to take into account electric charges), the energy density is not an entropy in the classical sense. Thus the system cannot be symmetrized, strictly speaking. However, we show that the structure is close enough to symmetrizability, so that the standard estimates still hold true.

  19. Controlled Nonlinear Stochastic Delay Equations: Part I: Modeling and Approximations

    SciTech Connect

    Kushner, Harold J.

    2012-08-15

    This two-part paper deals with 'foundational' issues that have not been previously considered in the modeling and numerical optimization of nonlinear stochastic delay systems. There are new classes of models, such as those with nonlinear functions of several controls (such as products), each with is own delay, controlled random Poisson measure driving terms, admissions control with delayed retrials, and others. There are two basic and interconnected themes for these models. The first, dealt with in this part, concerns the definition of admissible control. The classical definition of an admissible control as a nonanticipative relaxed control is inadequate for these models and needs to be extended. This is needed for the convergence proofs of numerical approximations for optimal controls as well as to have a well-defined model. It is shown that the new classes of admissible controls do not enlarge the range of the value functions, is closed (together with the associated paths) under weak convergence, and is approximatable by ordinary controls. The second theme, dealt with in Part II, concerns transportation equation representations, and their role in the development of numerical algorithms with much reduced memory and computational requirements.

  20. Statistical mechanics of the nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Lebowitz, Joel L.; Rose, Harvey A.; Speer, Eugene R.

    1988-02-01

    We investigate the statistical mechanics of a complex field ø whose dynamics is governed by the nonlinear Schrödinger equation. Such fields describe, in suitable idealizations, Langmuir waves in a plasma, a propagating laser field in a nonlinear medium, and other phenomena. Their Hamiltonian H(φ ) = int_Ω {[1/2|nabla φ |^2 - (1/p) |φ |^p ] dx} is unbounded below and the system will, under certain conditions, develop (self-focusing) singularities in a finite time. We show that, when Ω is the circle and the L 2 norm of the field (which is conserved by the dynamics) is bounded by N, the Gibbs measure υ obtained is absolutely continuous with respect to Wiener measure and normalizable if and only if p and N are such that classical solutions exist for all time—no collapse of the solitons. This measure is essentially the same as that of a one-dimensional version of the more realisitc Zakharov model of coupled Langmuir and ion acoustic waves in a plasma. We also obtain some properties of the Gibbs state, by both analytic and numerical methods, as N and the temperature are varied.

  1. Local error estimates for discontinuous solutions of nonlinear hyperbolic equations

    NASA Technical Reports Server (NTRS)

    Tadmor, Eitan

    1989-01-01

    Let u(x,t) be the possibly discontinuous entropy solution of a nonlinear scalar conservation law with smooth initial data. Suppose u sub epsilon(x,t) is the solution of an approximate viscosity regularization, where epsilon greater than 0 is the small viscosity amplitude. It is shown that by post-processing the small viscosity approximation u sub epsilon, pointwise values of u and its derivatives can be recovered with an error as close to epsilon as desired. The analysis relies on the adjoint problem of the forward error equation, which in this case amounts to a backward linear transport with discontinuous coefficients. The novelty of this approach is to use a (generalized) E-condition of the forward problem in order to deduce a W(exp 1,infinity) energy estimate for the discontinuous backward transport equation; this, in turn, leads one to an epsilon-uniform estimate on moments of the error u(sub epsilon) - u. This approach does not follow the characteristics and, therefore, applies mutatis mutandis to other approximate solutions such as E-difference schemes.

  2. Nonlinear Dirac equation solitary waves in external fields.

    PubMed

    Mertens, Franz G; Quintero, Niurka R; Cooper, Fred; Khare, Avinash; Saxena, Avadh

    2012-10-01

    We consider nonlinear Dirac equations (NLDE's) in the 1+1 dimension with scalar-scalar self-interaction g2/κ+1(Ψ[over ¯]Ψ)κ+1 in the presence of various external electromagnetic fields. We find exact solutions for special external fields and we study the behavior of solitary-wave solutions to the NLDE in the presence of a wide variety of fields in a variational approximation depending on collective coordinates which allows the position, width, and phase of these waves to vary in time. We find that in this approximation the position q(t) of the center of the solitary wave obeys the usual behavior of a relativistic point particle in an external field. For time-independent external fields, we find that the energy of the solitary wave is conserved but not the momentum, which becomes a function of time. We postulate that, similarly to the nonlinear Schrödinger equation (NLSE), a sufficient dynamical condition for instability to arise is that dP(t)/dq[over ̇](t)<0. Here P(t) is the momentum of the solitary wave, and q[over ̇] is the velocity of the center of the wave in the collective coordinate approximation. We found for our choices of external potentials that we always have dP(t)/dq[over ̇](t)>0, so, when instabilities do occur, they are due to a different source. We investigate the accuracy of our variational approximation using numerical simulations of the NLDE and find that, when the forcing term is small and we are in a regime where the solitary wave is stable, that the behavior of the solutions of the collective coordinate equations agrees very well with the numerical simulations. We found that the time evolution of the collective coordinates of the solitary wave in our numerical simulations, namely the position of the average charge density and the momentum of the solitary wave, provide good indicators for when the solitary wave first becomes unstable. When these variables stop being smooth functions of time (t), then the solitary wave starts to distort

  3. Nonlinear response of the surface electrostatic potential formed at metal oxide/electrolyte interfaces. A Monte Carlo simulation study

    SciTech Connect

    Zarzycki, Piotr P.; Rosso, Kevin M.

    2010-01-01

    An analysis of surface potential nonlinearity at metal oxide/electrolyte interfaces is presented. By using Grand Canonical Monte Carlo simulations of a simple lattice model of an interface, we show a correlation exists between ionic strength as well as surface site densities and the non-Nernstian response of a metal oxide electrode. We propose two approaches to deal with the 0-nonlinearity: one based on perturbative expansion of the Gibbs free energy and another based on assumption of the pH-dependence of surface potential slope. The theoretical anal ysis based on our new potential form gives excellent performance at extreme pH regions, where classical formulae based on the Poisson-Boltzmann equation fail. The new formula is general and independent of any underlying assumptions. For this reason, it can be directly applied to experimental surface potential measurements, including those for individual surfaces of single crystals, as we present for data reported by Kallay and Preocanin [Kallay, Preocanin J. Colloid and Interface20 Sci. 318 (2008) 290].

  4. Finite time blowup of solutions to the nonlinear Schrödinger equation without gauge invariance

    NASA Astrophysics Data System (ADS)

    Fujiwara, Kazumasa; Ozawa, Tohru

    2016-08-01

    A lifespan estimate and a condition of the initial data for finite time blowup for the nonlinear Schrödinger equation are presented from a view point of ordinary differential equation (ODE) mechanism.

  5. Hazardous Continuation Backward in Time in Nonlinear Parabolic Equations, and an Experiment in Deblurring Nonlinearly Blurred Imagery

    PubMed Central

    Carasso, Alfred S

    2013-01-01

    Identifying sources of ground water pollution, and deblurring nanoscale imagery as well as astronomical galaxy images, are two important applications involving numerical computation of parabolic equations backward in time. Surprisingly, very little is known about backward continuation in nonlinear parabolic equations. In this paper, an iterative procedure originating in spectroscopy in the 1930’s, is adapted into a useful tool for solving a wide class of 2D nonlinear backward parabolic equations. In addition, previously unsuspected difficulties are uncovered that may preclude useful backward continuation in parabolic equations deviating too strongly from the linear, autonomous, self adjoint, canonical model. This paper explores backward continuation in selected 2D nonlinear equations, by creating fictitious blurred images obtained by using several sharp images as initial data in these equations, and capturing the corresponding solutions at some positive time T. Successful backward continuation from t=T to t = 0, would recover the original sharp image. Visual recognition provides meaningful evaluation of the degree of success or failure in the reconstructed solutions. Instructive examples are developed, illustrating the unexpected influence of certain types of nonlinearities. Visually and statistically indistinguishable blurred images are presented, with vastly different deblurring results. These examples indicate that how an image is nonlinearly blurred is critical, in addition to the amount of blur. The equations studied represent nonlinear generalizations of Brownian motion, and the blurred images may be interpreted as visually expressing the results of novel stochastic processes. PMID:26401430

  6. Nonlinear diffusion equations as asymptotic limits of Cahn-Hilliard systems

    NASA Astrophysics Data System (ADS)

    Colli, Pierluigi; Fukao, Takeshi

    2016-05-01

    An asymptotic limit of a class of Cahn-Hilliard systems is investigated to obtain a general nonlinear diffusion equation. The target diffusion equation may reproduce a number of well-known model equations: Stefan problem, porous media equation, Hele-Shaw profile, nonlinear diffusion of singular logarithmic type, nonlinear diffusion of Penrose-Fife type, fast diffusion equation and so on. Namely, by setting the suitable potential of the Cahn-Hilliard systems, all these problems can be obtained as limits of the Cahn-Hilliard related problems. Convergence results and error estimates are proved.

  7. Exact solutions to a class of nonlinear Schrödinger-type equations

    NASA Astrophysics Data System (ADS)

    Zhang, Jin-Liang; Wang, Ming-Liang

    2006-12-01

    A class of nonlinear Schrödinger-type equations, including the Rangwal--Rao equation, the Gerdjikov--Ivanov equation, the Chen--Lee--Lin equation and the Ablowitz--Ramani--Segur equation are investigated, and the exact solutions are derived with the aid of the homogeneous balance principle, and a set of subsidiary higher order ordinary differential equations (sub-ODEs for short).

  8. Analytical Solution of the Space-Time Fractional Nonlinear Schrödinger Equation

    NASA Astrophysics Data System (ADS)

    Abdel-Salam, Emad A.-B.; Yousif, Eltayeb A.; El-Aasser, Mostafa A.

    2016-02-01

    The space-time fractional nonlinear Schrödinger equation is solved by mean of on the fractional Riccati expansion method. These solutions include generalized trigonometric and hyperbolic functions which could be useful for further understanding of mechanisms of the complicated nonlinear physical phenomena and fractional differential equations. Among these solutions, some are found for the first time.

  9. Soliton Theory of Two-Dimensional Lattices: The Discrete Nonlinear Schroedinger Equation

    SciTech Connect

    Arevalo, Edward

    2009-06-05

    We theoretically investigate the motion of collective excitations in the two-dimensional nonlinear Schroedinger equation with cubic nonlinearity. The form of these excitations for a broad range of parameters is derived. Their evolution and interaction is numerically studied and the modulation instability is discussed. The case of saturable nonlinearity is revisited.

  10. Functional constraints method for constructing exact solutions to delay reaction-diffusion equations and more complex nonlinear equations

    NASA Astrophysics Data System (ADS)

    Polyanin, Andrei D.; Zhurov, Alexei I.

    2014-03-01

    We propose a new method for constructing exact solutions to nonlinear delay reaction-diffusion equations of the form ut=kuxx+F(u,w), where u=u(x,t),w=u(x,t-τ), and τ is the delay time. The method is based on searching for solutions in the form u=∑n=1Nξn(x)ηn(t), where the functions ξn(x) and ηn(t) are determined from additional functional constraints (which are difference or functional equations) and the original delay partial differential equation. All of the equations considered contain one or two arbitrary functions of a single argument. We describe a considerable number of new exact generalized separable solutions and a few more complex solutions representing a nonlinear superposition of generalized separable and traveling wave solutions. All solutions involve free parameters (in some cases, infinitely many parameters) and so can be suitable for solving certain problems and testing approximate analytical and numerical methods for nonlinear delay PDEs. The results are extended to a wide class of nonlinear partial differential-difference equations involving arbitrary linear differential operators of any order with respect to the independent variables x and t (in particular, this class includes the nonlinear delay Klein-Gordon equation) as well as to some partial functional differential equations with time-varying delay.

  11. A bivariate Chebyshev spectral collocation quasilinearization method for nonlinear evolution parabolic equations.

    PubMed

    Motsa, S S; Magagula, V M; Sibanda, P

    2014-01-01

    This paper presents a new method for solving higher order nonlinear evolution partial differential equations (NPDEs). The method combines quasilinearisation, the Chebyshev spectral collocation method, and bivariate Lagrange interpolation. In this paper, we use the method to solve several nonlinear evolution equations, such as the modified KdV-Burgers equation, highly nonlinear modified KdV equation, Fisher's equation, Burgers-Fisher equation, Burgers-Huxley equation, and the Fitzhugh-Nagumo equation. The results are compared with known exact analytical solutions from literature to confirm accuracy, convergence, and effectiveness of the method. There is congruence between the numerical results and the exact solutions to a high order of accuracy. Tables were generated to present the order of accuracy of the method; convergence graphs to verify convergence of the method and error graphs are presented to show the excellent agreement between the results from this study and the known results from literature. PMID:25254252

  12. A Bivariate Chebyshev Spectral Collocation Quasilinearization Method for Nonlinear Evolution Parabolic Equations

    PubMed Central

    Motsa, S. S.; Magagula, V. M.; Sibanda, P.

    2014-01-01

    This paper presents a new method for solving higher order nonlinear evolution partial differential equations (NPDEs). The method combines quasilinearisation, the Chebyshev spectral collocation method, and bivariate Lagrange interpolation. In this paper, we use the method to solve several nonlinear evolution equations, such as the modified KdV-Burgers equation, highly nonlinear modified KdV equation, Fisher's equation, Burgers-Fisher equation, Burgers-Huxley equation, and the Fitzhugh-Nagumo equation. The results are compared with known exact analytical solutions from literature to confirm accuracy, convergence, and effectiveness of the method. There is congruence between the numerical results and the exact solutions to a high order of accuracy. Tables were generated to present the order of accuracy of the method; convergence graphs to verify convergence of the method and error graphs are presented to show the excellent agreement between the results from this study and the known results from literature. PMID:25254252

  13. A simple and direct method for generating travelling wave solutions for nonlinear equations

    SciTech Connect

    Bazeia, D. Das, Ashok; Silva, A.

    2008-05-15

    We propose a simple and direct method for generating travelling wave solutions for nonlinear integrable equations. We illustrate how nontrivial solutions for the KdV, the mKdV and the Boussinesq equations can be obtained from simple solutions of linear equations. We describe how using this method, a soliton solution of the KdV equation can yield soliton solutions for the mKdV as well as the Boussinesq equations. Similarly, starting with cnoidal solutions of the KdV equation, we can obtain the corresponding solutions for the mKdV as well as the Boussinesq equations. Simple solutions of linear equations can also lead to cnoidal solutions of nonlinear systems. Finally, we propose and solve some new families of KdV equations and show how soliton solutions are also obtained for the higher order equations of the KdV hierarchy using this method.

  14. On the Stability of Self-Similar Solutions to Nonlinear Wave Equations

    NASA Astrophysics Data System (ADS)

    Costin, Ovidiu; Donninger, Roland; Glogić, Irfan; Huang, Min

    2016-04-01

    We consider an explicit self-similar solution to an energy-supercritical Yang-Mills equation and prove its mode stability. Based on earlier work by one of the authors, we obtain a fully rigorous proof of the nonlinear stability of the self-similar blowup profile. This is a large-data result for a supercritical wave equation. Our method is broadly applicable and provides a general approach to stability problems related to self-similar solutions of nonlinear wave equations.

  15. Exact finite difference schemes for the non-linear unidirectional wave equation

    NASA Technical Reports Server (NTRS)

    Mickens, R. E.

    1985-01-01

    Attention is given to the construction of exact finite difference schemes for the nonlinear unidirectional wave equation that describes the nonlinear propagation of a wave motion in the positive x-direction. The schemes constructed for these equations are compared with those obtained by using the usual procedures of numerical analysis. It is noted that the order of the exact finite difference models is equal to the order of the differential equation.

  16. Nonlinear self adjointness, conservation laws and exact solutions of ill-posed Boussinesq equation

    NASA Astrophysics Data System (ADS)

    Yaşar, Emrullah; San, Sait; Özkan, Yeşim Sağlam

    2016-01-01

    In this work, we consider the ill-posed Boussinesq equation which arises in shallow water waves and non-linear lattices. We prove that the ill-posed Boussinesq equation is nonlinearly self-adjoint. Using this property and Lie point symmetries, we construct conservation laws for the underlying equation. In addition, the generalized solitonary, periodic and compact-like solutions are constructed by the exp-function method.

  17. Damping models in the truncated derivative nonlinear Schroedinger equation

    SciTech Connect

    Sanchez-Arriaga, G.; Sanmartin, J. R.; Elaskar, S. A.

    2007-08-15

    Four-dimensional flow in the phase space of three amplitudes of circularly polarized Alfven waves and one relative phase, resulting from a resonant three-wave truncation of the derivative nonlinear Schroedinger equation, has been analyzed; wave 1 is linearly unstable with growth rate {gamma}, and waves 2 and 3 are stable with damping {gamma}{sub 2} and {gamma}{sub 3}, respectively. The dependence of gross dynamical features on the damping model (as characterized by the relation between damping and wave-vector ratios, {gamma}{sub 2}/{gamma}{sub 3}, k{sub 2}/k{sub 3}), and the polarization of the waves, is discussed; two damping models, Landau ({gamma}{proportional_to}k) and resistive ({gamma}{proportional_to}k{sup 2}), are studied in depth. Very complex dynamics, such as multiple blue sky catastrophes and chaotic attractors arising from Feigenbaum sequences, and explosive bifurcations involving Intermittency-I chaos, are shown to be associated with the existence and loss of stability of certain fixed point P of the flow. Independently of the damping model, P may only exist for {gamma}<2({gamma}{sub 2}+{gamma}{sub 3})/3, as against flow contraction just requiring {gamma}<{gamma}{sub 2}+{gamma}{sub 3}. In the case of right-hand (RH) polarization, point P may exist for all models other than Landau damping; for the resistive model, P may exist for RH polarization only if {gamma}<({gamma}{sub 2}+{gamma}{sub 3})/2.

  18. Hierarchies of nonlinear integrable equations and their symmetries in 2 + 1 dimensions

    NASA Astrophysics Data System (ADS)

    Cheng, Yi

    1990-11-01

    For a given nonlinear integrable equation in 2 + 1 dimensions, an approach is described to construct the hierarchies of equations and relevant Lie algebraic properties. The commutability and noncommutability of equations of the flow, their symmetries and mastersymmetries are then derived as direct results of these algebraic properties. The details for the modified Kadomtsev-Petviashvilli equation are shown as an example and the main results for the (2 + 1)-dimensional Caudrey-Dodd-Gibbon-Katera-Sawada equation are given.

  19. Soliton solutions to a few fractional nonlinear evolution equations in shallow water wave dynamics

    NASA Astrophysics Data System (ADS)

    Mirzazadeh, Mohammad; Ekici, Mehmet; Sonmezoglu, Abdullah; Ortakaya, Sami; Eslami, Mostafa; Biswas, Anjan

    2016-05-01

    This paper studies a few nonlinear evolution equations that appear with fractional temporal evolution and fractional spatial derivatives. These are Benjamin-Bona-Mahoney equation, dispersive long wave equation and Nizhnik-Novikov-Veselov equation. The extended Jacobi's elliptic function expansion method is implemented to obtain soliton and other periodic singular solutions to these equations. In the limiting case, when the modulus of ellipticity approaches zero or unity, these doubly periodic functions approach solitary waves or shock waves or periodic singular solutions emerge.

  20. Deriving the New Traveling Wave Solutions for the Nonlinear Dispersive Equation, KdV-ZK Equation and Complex Coupled KdV System Using Extended Simplest Equation Method

    NASA Astrophysics Data System (ADS)

    Mohammed, K. Elboree

    2015-10-01

    In this paper, we investigate the traveling wave solutions for the nonlinear dispersive equation, Korteweg-de Vries Zakharov-Kuznetsov (KdV-ZK) equation and complex coupled KdV system by using extended simplest equation method, and then derive the hyperbolic function solutions include soliton solutions, trigonometric function solutions include periodic solutions with special values for double parameters and rational solutions. The properties of such solutions are shown by figures. The results show that this method is an effective and a powerful tool for handling the solutions of nonlinear partial differential equations (NLEEs) in mathematical physics.

  1. A more general model equation of nonlinear Rayleigh waves and their quasilinear solutions

    NASA Astrophysics Data System (ADS)

    Zhang, Shuzeng; Li, Xiongbing; Jeong, Hyunjo

    2016-03-01

    A more general two-dimensional wave motion equation with consideration of attenuation and nonlinearity is proposed to describe propagating nonlinear Rayleigh waves of finite amplitude. Based on the quasilinear theory, the numerical solutions for the sound beams of fundamental and second harmonic waves are constructed with Green’s function method. Compared with solutions from the parabolic approximate equation, results from the general equation have more accuracy in both the near distance of the propagation direction and the far distance of the transverse direction, as quasiplane waves are used and non-paraxial Green’s functions are obtained. It is more effective to obtain the nonlinear Rayleigh sound beam distributions accurately with the proposed general equation and solutions. Brief consideration is given to the measurement of nonlinear parameter using nonlinear Rayleigh waves.

  2. Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes II: size effects on ionic distributions and diffusion-reaction rates.

    PubMed

    Lu, Benzhuo; Zhou, Y C

    2011-05-18

    The effects of finite particle size on electrostatics, density profiles, and diffusion have been a long existing topic in the study of ionic solution. The previous size-modified Poisson-Boltzmann and Poisson-Nernst-Planck models are revisited in this article. In contrast to many previous works that can only treat particle species with a single uniform size or two sizes, we generalize the Borukhov model to obtain a size-modified Poisson-Nernst-Planck (SMPNP) model that is able to treat nonuniform particle sizes. The numerical tractability of the model is demonstrated as well. The main contributions of this study are as follows. 1), We show that an (arbitrarily) size-modified PB model is indeed implied by the SMPNP equations under certain boundary/interface conditions, and can be reproduced through numerical solutions of the SMPNP. 2), The size effects in the SMPNP effectively reduce the densities of highly concentrated counterions around the biomolecule. 3), The SMPNP is applied to the diffusion-reaction process for the first time, to our knowledge. In the case of low substrate density near the enzyme reactive site, it is observed that the rate coefficients predicted by SMPNP model are considerably larger than those by the PNP model, suggesting both ions and substrates are subject to finite size effects. 4), An accurate finite element method and a convergent Gummel iteration are developed for the numerical solution of the completely coupled nonlinear system of SMPNP equations. PMID:21575582

  3. On a hierarchy of nonlinearly dispersive generalized Korteweg - de Vries evolution equations

    SciTech Connect

    Christov, Ivan C.

    2015-08-20

    We propose a hierarchy of nonlinearly dispersive generalized Korteweg–de Vries (KdV) evolution equations based on a modification of the Lagrangian density whose induced action functional the KdV equation extremizes. Two recent nonlinear evolution equations describing wave propagation in certain generalized continua with an inherent material length scale are members of the proposed hierarchy. Like KdV, the equations from the proposed hierarchy possess Hamiltonian structure. Unlike KdV, the solutions to these equations can be compact (i.e., they vanish outside of some open interval) and, in addition, peaked. Implicit solutions for these peaked, compact traveling waves (“peakompactons”) are presented.

  4. Integrable pair-transition-coupled nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Ling, Liming; Zhao, Li-Chen

    2015-08-01

    We study integrable coupled nonlinear Schrödinger equations with pair particle transition between components. Based on exact solutions of the coupled model with attractive or repulsive interaction, we predict that some new dynamics of nonlinear excitations can exist, such as the striking transition dynamics of breathers, new excitation patterns for rogue waves, topological kink excitations, and other new stable excitation structures. In particular, we find that nonlinear wave solutions of this coupled system can be written as a linear superposition of solutions for the simplest scalar nonlinear Schrödinger equation. Possibilities to observe them are discussed in a cigar-shaped Bose-Einstein condensate with two hyperfine states. The results would enrich our knowledge on nonlinear excitations in many coupled nonlinear systems with transition coupling effects, such as multimode nonlinear fibers, coupled waveguides, and a multicomponent Bose-Einstein condensate system.

  5. Integrable pair-transition-coupled nonlinear Schrödinger equations.

    PubMed

    Ling, Liming; Zhao, Li-Chen

    2015-08-01

    We study integrable coupled nonlinear Schrödinger equations with pair particle transition between components. Based on exact solutions of the coupled model with attractive or repulsive interaction, we predict that some new dynamics of nonlinear excitations can exist, such as the striking transition dynamics of breathers, new excitation patterns for rogue waves, topological kink excitations, and other new stable excitation structures. In particular, we find that nonlinear wave solutions of this coupled system can be written as a linear superposition of solutions for the simplest scalar nonlinear Schrödinger equation. Possibilities to observe them are discussed in a cigar-shaped Bose-Einstein condensate with two hyperfine states. The results would enrich our knowledge on nonlinear excitations in many coupled nonlinear systems with transition coupling effects, such as multimode nonlinear fibers, coupled waveguides, and a multicomponent Bose-Einstein condensate system. PMID:26382492

  6. Global solutions to two nonlinear perturbed equations by renormalization group method

    NASA Astrophysics Data System (ADS)

    Kai, Yue

    2016-02-01

    In this paper, according to the theory of envelope, the renormalization group (RG) method is applied to obtain the global approximate solutions to perturbed Burger's equation and perturbed KdV equation. The results show that the RG method is simple and powerful for finding global approximate solutions to nonlinear perturbed partial differential equations arising in mathematical physics.

  7. A note on the generation of phase plane plots on a digital computer. [for solution of nonlinear differential equations

    NASA Technical Reports Server (NTRS)

    Simon, M. K.

    1980-01-01

    A technique is presented for generating phase plane plots on a digital computer which circumvents the difficulties associated with more traditional methods of numerical solving nonlinear differential equations. In particular, the nonlinear differential equation of operation is formulated.

  8. Projection methods for solving nonlinear systems of equations

    SciTech Connect

    Brown, P.N. ); Saad, Y. . Ames Research Center)

    1990-04-01

    This paper describes several nonlinear projection methods based on Krylov subspaces and analyzes their convergence. The prototype of these methods is a technique that generalizes the conjugate direction method by minimizing the norm of the function F over some subspace. The emphasis of this paper is on nonlinear least squares problems which can also be handled by this general approach.

  9. Lump solitons in a higher-order nonlinear equation in 2 +1 dimensions

    NASA Astrophysics Data System (ADS)

    Estévez, P. G.; Díaz, E.; Domínguez-Adame, F.; Cerveró, Jose M.; Diez, E.

    2016-06-01

    We propose and examine an integrable system of nonlinear equations that generalizes the nonlinear Schrödinger equation to 2 +1 dimensions. This integrable system of equations is a promising starting point to elaborate more accurate models in nonlinear optics and molecular systems within the continuum limit. The Lax pair for the system is derived after applying the singular manifold method. We also present an iterative procedure to construct the solutions from a seed solution. Solutions with one-, two-, and three-lump solitons are thoroughly discussed.

  10. Lump solitons in a higher-order nonlinear equation in 2+1 dimensions.

    PubMed

    Estévez, P G; Díaz, E; Domínguez-Adame, F; Cerveró, Jose M; Diez, E

    2016-06-01

    We propose and examine an integrable system of nonlinear equations that generalizes the nonlinear Schrödinger equation to 2+1 dimensions. This integrable system of equations is a promising starting point to elaborate more accurate models in nonlinear optics and molecular systems within the continuum limit. The Lax pair for the system is derived after applying the singular manifold method. We also present an iterative procedure to construct the solutions from a seed solution. Solutions with one-, two-, and three-lump solitons are thoroughly discussed. PMID:27415266

  11. Numerical Simulations of Self-Focused Pulses Using the Nonlinear Maxwell Equations

    NASA Technical Reports Server (NTRS)

    Goorjian, Peter M.; Silberberg, Yaron; Kwak, Dochan (Technical Monitor)

    1994-01-01

    This paper will present results in computational nonlinear optics. An algorithm will be described that solves the full vector nonlinear Maxwell's equations exactly without the approximations that are currently made. Present methods solve a reduced scalar wave equation, namely the nonlinear Schrodinger equation, and neglect the optical carrier. Also, results will be shown of calculations of 2-D electromagnetic nonlinear waves computed by directly integrating in time the nonlinear vector Maxwell's equations. The results will include simulations of 'light bullet' like pulses. Here diffraction and dispersion will be counteracted by nonlinear effects. The time integration efficiently implements linear and nonlinear convolutions for the electric polarization, and can take into account such quantum effects as Kerr and Raman interactions. The present approach is robust and should permit modeling 2-D and 3-D optical soliton propagation, scattering, and switching directly from the full-vector Maxwell's equations. Abstract of a proposed paper for presentation at the meeting NONLINEAR OPTICS: Materials, Fundamentals, and Applications, Hyatt Regency Waikaloa, Waikaloa, Hawaii, July 24-29, 1994, Cosponsored by IEEE/Lasers and Electro-Optics Society and Optical Society of America

  12. Symmetry analysis for a class of nonlinear dispersive equations

    NASA Astrophysics Data System (ADS)

    Charalambous, K.; Sophocleous, C.

    2015-05-01

    A class of dispersive equations is studied within the framework of group analysis of differential equations. The enhanced Lie group classification is achieved. The complete list of equivalence transformations is presented. It is shown that certain equations from the class admit nonclassical reductions. Potential and potential nonclassical symmetries are also considered.

  13. The study of nonlinear almost periodic differential equations without recourse to the H-classes of these equations

    SciTech Connect

    Slyusarchuk, V. E. E-mail: V.Ye.Slyusarchuk@NUWM.rv.ua

    2014-06-01

    The well-known theorems of Favard and Amerio on the existence of almost periodic solutions to linear and nonlinear almost periodic differential equations depend to a large extent on the H-classes and the requirement that the bounded solutions of these equations be separated. The present paper provides different conditions for the existence of almost periodic solutions. These conditions, which do not depend on the H-classes of the equations, are formulated in terms of a special functional on the set of bounded solutions of the equations under consideration. This functional is used, in particular, to test whether solutions are separated. Bibliography: 24 titles. (paper)

  14. New analytical method for solving Burgers' and nonlinear heat transfer equations and comparison with HAM

    NASA Astrophysics Data System (ADS)

    Rashidi, M. M.; Erfani, E.

    2009-09-01

    In this study, we present a numerical comparison between the differential transform method (DTM) and the homotopy analysis method (HAM) for solving Burgers' and nonlinear heat transfer problems. The first differential equation is the Burgers' equation serves as a useful model for many interesting problems in applied mathematics. The second one is the modeling equation of a straight fin with a temperature dependent thermal conductivity. In order to show the effectiveness of the DTM, the results obtained from the DTM is compared with available solutions obtained using the HAM [M.M. Rashidi, G. Domairry, S. Dinarvand, Commun. Nonlinear Sci. Numer. Simul. 14 (2009) 708-717; G. Domairry, M. Fazeli, Commun. Nonlinear Sci. Numer. Simul. 14 (2009) 489-499] and whit exact solutions. The method can easily be applied to many linear and nonlinear problems. It illustrates the validity and the great potential of the differential transform method in solving nonlinear partial differential equations. The obtained results reveal that the technique introduced here is very effective and convenient for solving nonlinear partial differential equations and nonlinear ordinary differential equations that we are found to be in good agreement with the exact solutions.

  15. Stationary states of extended nonlinear Schrödinger equation with a source

    NASA Astrophysics Data System (ADS)

    Borich, M. A.; Smagin, V. V.; Tankeev, A. P.

    2007-02-01

    Structure of nonlinear stationary states of the extended nonlinear Schrödinger equation (ENSE) with a source has been analyzed with allowance for both third-order and nonlinearity dispersion. A new class of particular solutions (solitary waves) of the ENSe has been obtained. The scenario of the destruction of these states under the effect of an external perturbation has been investigated analytically and numerically. The results obtained can be used to interpret experimental data on the weakly nonlinear dynamics of the magnetostatic envelope in heterophase ferromagnet-insulator-metal, metal-insulator-ferromagnet-insulator-metal, and other similar structures and upon the simulation of nonlinear processes in optical systems.

  16. Chirped femtosecond pulses in the higher-order nonlinear Schrödinger equation with non-Kerr nonlinear terms and cubic-quintic-septic nonlinearities

    NASA Astrophysics Data System (ADS)

    Triki, Houria; Biswas, Anjan; Milović, Daniela; Belić, Milivoj

    2016-05-01

    We consider a high-order nonlinear Schrödinger equation with competing cubic-quintic-septic nonlinearities, non-Kerr quintic nonlinearity, self-steepening, and self-frequency shift. The model describes the propagation of ultrashort (femtosecond) optical pulses in highly nonlinear optical fibers. A new ansatz is adopted to obtain nonlinear chirp associated with the propagating femtosecond soliton pulses. It is shown that the resultant elliptic equation of the problem is of high order, contains several new terms and is more general than the earlier reported results, thus providing a systematic way to find exact chirped soliton solutions of the septic model. Novel soliton solutions, including chirped bright, dark, kink and fractional-transform soliton solutions are obtained for special choices of parameters. Furthermore, we present the parameter domains in which these optical solitons exist. The nonlinear chirp associated with each of the solitonic solutions is also determined. It is shown that the chirping is proportional to the intensity of the wave and depends on higher-order nonlinearities. Of special interest is the soliton solution of the bright and dark type, determined for the general case when all coefficients in the equation have nonzero values. These results can be useful for possible chirped-soliton-based applications of highly nonlinear optical fiber systems.

  17. The theory of semipermeable vesicles and membranes: An integral-equation approach. II. Donnan equilibrium

    NASA Astrophysics Data System (ADS)

    Zhou, Yaoqi; Stell, George

    1988-12-01

    Integral equations that yield the charge and density profiles are derived for a Donnan system, in which an ionic solution is separated into two regions by a semipermeable membrane (SPM) or a spherical semipermeable vesicle (SPV). These equations are obtained from the Ornstein-Zernike (OZ) equation. We show how quantitative results can be obtained from either the mean spherical approximation (MSA) closure or the hypernetted-chain (HNC) closure for profiles. Use is made of bulk-correlation input obtained by means of the Debye-Hückel approximation, the MSA approximation, or the HNC approximation. The resulting approximations will be referred as MSA/DH, HNC/DH, MSA/MSA, etc. The system on which we focus contains three charged hard-sphere species: cation, anion, and a large ion (a protein or polymer ion) separated by a plane SPM, through which the large ion cannot pass, and to one side of which all large ions are confined, or a spherical SPV, outside of which the large ions are confined. Analytical expressions for the bulk density ratio between the two sides of a plane membrane as well as the membrane potential in various approximations are obtained. Results obtained from these expresssions are compared with the results obtained by equating electrochemical potentials. A new contact-value theorem is provided for the plane SPM system. Analytical solutions for the charge profile and the potential profile in the MSA/DH approximation are obtained. It turns out that results obtained in the HNC/DH approximation are exactly the same as those obtained by using 1D nonlinear Poisson-Boltzmann equations if the repulsive cores of the macroions are neglected.

  18. Some exact solutions of a system of nonlinear Schroedinger equations in three-dimensional space

    SciTech Connect

    Moskalyuk, S.S.

    1988-02-01

    Interactions that break the symmetry of systems of nonrelativistic Schroedinger equations but preserve their symmetry with respect to one-parameter subgroups of the Schroedinger group are described. Ansatzes for invariant solutions and the corresponding systems of reduced equations in invariant variables for Galileo-invariant Schroedinger equations are found. Exact solutions for the system of nonlinear Schroedinger equations in three-dimensional space for the generalized Hubbard model are obtained.

  19. Construction of rogue wave and lump solutions for nonlinear evolution equations

    NASA Astrophysics Data System (ADS)

    Lü, Zhuosheng; Chen, Yinnan

    2015-07-01

    Based on symbolic computation and an ansatz, we present a constructive algorithm to seek rogue wave and lump solutions for nonlinear evolution equations. As illustrative examples, we consider the potential-YTSF equation and a variable coefficient KP equation, and obtain nonsingular rational solutions of the two equations. The solutions can be rogue wave or lump solutions under different parameter conditions. We also present graphic illustration of some special solutions which would help better understand the evolution of solution waves.

  20. Modulation of breathers in the three-dimensional nonlinear Gross-Pitaevskii equation

    SciTech Connect

    Avelar, A. T.; Cardoso, W. B.; Bazeia, D.

    2010-11-15

    In this paper we present analytical breather solutions of the three-dimensional nonlinear generalized Gross-Pitaevskii equation. We use an Ansatz to reduce the three-dimensional equation with space- and time-dependent coefficients into a one-dimensional equation with constant coefficients. The key point is to show that both the space- and time-dependent coefficients of the nonlinear equation can contribute to modulate the breather excitations. We briefly discuss the experimental feasibility of the results in Bose-Einstein condensates.

  1. Evolution of higher order nonlinear equation for the dust ion-acoustic waves in nonextensive plasma

    SciTech Connect

    Yasmin, S.; Asaduzzaman, M.; Mamun, A. A.

    2012-10-15

    There are three different types of nonlinear equations, namely, Korteweg-de Vries (K-dV), modified K-dV (mK-dV), and mixed modified K-dV (mixed mK-dV) equations, for the nonlinear propagation of the dust ion-acoustic (DIA) waves. The effects of electron nonextensivity on DIA solitary waves propagating in a dusty plasma (containing negatively charged stationary dust, inertial ions, and nonextensive q distributed electrons) are examined by solving these nonlinear equations. The basic features of mixed mK-dV (higher order nonlinear equation) solitons are found to exist beyond the K-dV limit. The properties of mK-dV solitons are compared with those of mixed mK-dV solitons. It is found that both positive and negative solitons are obtained depending on the q (nonextensive parameter).

  2. Generalized mean-field or master equation for nonlinear cavities with transverse effects.

    PubMed

    Dunlop, A M; Firth, W J; Heatley, D R; Wright, E M

    1996-06-01

    We present a general form of master equation for nonlinear-optical cavities that can be described by an ABCD matrix. It includes as special cases some previous models of spatiotemporal effects in lasers. PMID:19876153

  3. Analytical-numerical solution of a nonlinear integrodifferential equation in econometrics

    NASA Astrophysics Data System (ADS)

    Kakhktsyan, V. M.; Khachatryan, A. Kh.

    2013-07-01

    A mixed problem for a nonlinear integrodifferential equation arising in econometrics is considered. An analytical-numerical method is proposed for solving the problem. Some numerical results are presented.

  4. On the structure of nonlinear constitutive equations for fiber reinforced composites

    NASA Technical Reports Server (NTRS)

    Jansson, Stefan

    1992-01-01

    The structure of constitutive equations for nonlinear multiaxial behavior of transversely isotropic fiber reinforced metal matrix composites subject to proportional loading was investigated. Results from an experimental program were combined with numerical simulations of the composite behavior for complex stress to reveal the full structure of the equations. It was found that the nonlinear response can be described by a quadratic flow-potential, based on the polynomial stress invariants, together with a hardening rule that is dominated by two different hardening mechanisms.

  5. Sharp rates of decay of solutions to the nonlinear fast diffusion equation via functional inequalities

    PubMed Central

    Vázquez, J. L.

    2010-01-01

    The goal of this paper is to state the optimal decay rate for solutions of the nonlinear fast diffusion equation and, in self-similar variables, the optimal convergence rates to Barenblatt self-similar profiles and their generalizations. It relies on the identification of the optimal constants in some related Hardy–Poincaré inequalities and concludes a long series of papers devoted to generalized entropies, functional inequalities, and rates for nonlinear diffusion equations. PMID:20823259

  6. Solution of Chemical Master Equations for Nonlinear Stochastic Reaction Networks

    PubMed Central

    Smadbeck, Patrick; Kaznessis, Yiannis N.

    2014-01-01

    Stochasticity in the dynamics of small reacting systems requires discrete-probabilistic models of reaction kinetics instead of traditional continuous-deterministic ones. The master probability equation is a complete model of randomly evolving molecular populations. Because of its ambitious character, the master equation remained unsolved for all but the simplest of molecular interaction networks. With the first solution of chemical master equations, a wide range of experimental observations of small-system interactions may be mathematically conceptualized. PMID:25215268

  7. Nonplanar traveling fronts in reaction-diffusion equations with combustion and degenerate Fisher-KPP nonlinearities

    NASA Astrophysics Data System (ADS)

    Wang, Zhi-Cheng; Bu, Zhen-Hui

    2016-04-01

    This paper is concerned with nonplanar traveling fronts in reaction-diffusion equations with combustion nonlinearity and degenerate Fisher-KPP nonlinearity. Our study contains two parts: in the first part we establish the existence of traveling fronts of pyramidal shape in R3, and in the second part we establish the existence and stability of V-shaped traveling fronts in R2.

  8. Implementation guide for MINPACK-1. [Package of Fortran subprograms for solution of systems of nonlinear equations

    SciTech Connect

    Garbow, B.S.; Hillstrom, K.E.; More, J.J.

    1980-07-01

    MINPACK-1 is a package of Fortran subprograms for the numerical solution of systems of nonlinear equations and nonlinear least-squares problems. This report describes how to implement the package from the tape on which it is transmitted. 3 tables.

  9. Infinite hierarchy of nonlinear Schrödinger equations and their solutions

    NASA Astrophysics Data System (ADS)

    Ankiewicz, A.; Kedziora, D. J.; Chowdury, A.; Bandelow, U.; Akhmediev, N.

    2016-01-01

    We study the infinite integrable nonlinear Schrödinger equation hierarchy beyond the Lakshmanan-Porsezian-Daniel equation which is a particular (fourth-order) case of the hierarchy. In particular, we present the generalized Lax pair and generalized soliton solutions, plane wave solutions, Akhmediev breathers, Kuznetsov-Ma breathers, periodic solutions, and rogue wave solutions for this infinite-order hierarchy. We find that "even- order" equations in the set affect phase and "stretching factors" in the solutions, while "odd-order" equations affect the velocities. Hence odd-order equation solutions can be real functions, while even-order equation solutions are always complex.

  10. Infinite hierarchy of nonlinear Schrödinger equations and their solutions.

    PubMed

    Ankiewicz, A; Kedziora, D J; Chowdury, A; Bandelow, U; Akhmediev, N

    2016-01-01

    We study the infinite integrable nonlinear Schrödinger equation hierarchy beyond the Lakshmanan-Porsezian-Daniel equation which is a particular (fourth-order) case of the hierarchy. In particular, we present the generalized Lax pair and generalized soliton solutions, plane wave solutions, Akhmediev breathers, Kuznetsov-Ma breathers, periodic solutions, and rogue wave solutions for this infinite-order hierarchy. We find that "even- order" equations in the set affect phase and "stretching factors" in the solutions, while "odd-order" equations affect the velocities. Hence odd-order equation solutions can be real functions, while even-order equation solutions are always complex. PMID:26871072

  11. Nonlinear equations of motion for the elastic bending and torsion of twisted nonuniform rotor blades

    NASA Technical Reports Server (NTRS)

    Hodges, D. H.; Dowell, E. H.

    1974-01-01

    The equations of motion are developed by two complementary methods, Hamilton's principle and the Newtonian method. The resulting equations are valid to second order for long, straight, slender, homogeneous, isotropic beams undergoing moderate displacements. The ordering scheme is based on the restriction that squares of the bending slopes, the torsion deformation, and the chord/radius and thickness/radius ratios are negligible with respect to unity. All remaining nonlinear terms are retained. The equations are valid for beams with mass centroid axis and area centroid (tension) axis offsets from the elastic axis, nonuniform mass and stiffness section properties, variable pretwist, and a small precone angle. The strain-displacement relations are developed from an exact transformation between the deformed and undeformed coordinate systems. These nonlinear relations form an important contribution to the final equations. Several nonlinear structural and inertial terms in the final equations are identified that can substantially influence the aeroelastic stability and response of hingeless helicopter rotor blades.

  12. Nonlinear Solver Approaches for the Diffusive Wave Approximation to the Shallow Water Equations

    NASA Astrophysics Data System (ADS)

    Collier, N.; Knepley, M.

    2015-12-01

    The diffusive wave approximation to the shallow water equations (DSW) is a doubly-degenerate, nonlinear, parabolic partial differential equation used to model overland flows. Despite its challenges, the DSW equation has been extensively used to model the overland flow component of various integrated surface/subsurface models. The equation's complications become increasingly problematic when ponding occurs, a feature which becomes pervasive when solving on large domains with realistic terrain. In this talk I discuss the various forms and regularizations of the DSW equation and highlight their effect on the solvability of the nonlinear system. In addition to this analysis, I present results of a numerical study which tests the applicability of a class of composable nonlinear algebraic solvers recently added to the Portable, Extensible, Toolkit for Scientific Computation (PETSc).

  13. Differential geometry techniques for sets of nonlinear partial differential equations

    NASA Technical Reports Server (NTRS)

    Estabrook, Frank B.

    1990-01-01

    An attempt is made to show that the Cartan theory of partial differential equations can be a useful technique for applied mathematics. Techniques for finding consistent subfamilies of solutions that are generically rich and well-posed and for introducing potentials or other usefully consistent auxiliary fields are introduced. An extended sample calculation involving the Korteweg-de Vries equation is given.

  14. Solving nonlinear differential equation governing on the rigid beams on viscoelastic foundation by AGM

    NASA Astrophysics Data System (ADS)

    Akbari, M. R.; Ganji, D. D.; Rostami, A. K.; Nimafar, M.

    2015-03-01

    In the present paper a vibrational differential equation governing on a rigid beam on viscoelastic foundation has been investigated. The nonlinear differential equation governing on this vibrating system is solved by a simple and innovative approach, which has been called Akbari-Ganji's method (AGM). AGM is a very suitable computational process and is usable for solving various nonlinear differential equations. Moreover, using AGM which solving a set of algebraic equations, complicated nonlinear equations can easily be solved without any mathematical operations. Also, the damping ratio and energy lost per cycle for three cycles have been investigated. Furthermore, comparisons have been made between the obtained results by numerical method (Runk45) and AGM. Results showed the high accuracy of AGM. The results also showed that by increasing the amount of initial amplitude of vibration ( A), the value of damping ratio will be increased, and the energy lost per cycle decreases by increasing the number of cycle. It is concluded that AGM is a reliable and precise approach for solving differential equations. On the other hand, it is better to say that AGM is able to solve linear and nonlinear differential equations directly in most of the situations. This means that the final solution can be obtained without any dimensionless procedure. Therefore, AGM can be considered as a significant progress in nonlinear sciences.

  15. Existence of global decaying solutions to the exterior problem for the Klein-Gordon equation with a nonlinear localized dissipation and a derivative nonlinearity

    NASA Astrophysics Data System (ADS)

    Nakao, Mitsuhiro

    We prove the existence of global decaying solutions to the exterior problem for the Klein-Gordon equation with a nonlinear localized dissipation and a derivative nonlinearity. To derive the required estimates of solutions we employ a 'loan' method.

  16. New exact solutions to the perturbed nonlinear Schrödinger’s equation with Kerr law nonlinearity via modified trigonometric function series method

    NASA Astrophysics Data System (ADS)

    Zhang, Zai-yun; Li, Yun-xiang; Liu, Zhen-hai; Miao, Xiu-jin

    2011-08-01

    In this paper, the modified trigonometric function series method is employed to solve the perturbed nonlinear Schrödinger's equation (NLSE) with Kerr law nonlinearity. Exact traveling wave solutions are obtained.

  17. Electrokinetic and electrostatic properties of bilayers containing gangliosides GM1, GD1a, or GT1. Comparison with a nonlinear theory.

    PubMed Central

    McDaniel, R V; Sharp, K; Brooks, D; McLaughlin, A C; Winiski, A P; Cafiso, D; McLaughlin, S

    1986-01-01

    We formed vesicles from mixtures of egg phosphatidylcholine (PC) and the gangliosides GM1, GD1a, or GT1 to model the electrokinetic properties of biological membranes. The electrophoretic mobilities of the vesicles are similar in NaCl, CsCl, and TMACl solutions, suggesting that monovalent cations do not bind significantly to these gangliosides. If we assume the sialic acid groups on the gangliosides are located some distance from the surface of the vesicle and the sugar moieties exert hydrodynamic drag, we can describe the mobility data in 1, 10, and 100 mM monovalent salt solutions with a combination of the Navier-Stokes and nonlinear Poisson-Boltzmann equations. The values we assume for the thickness of the ganglioside head group and the location of the charge affect the theoretical predictions markedly, but the Stokes radius of each sugar and the location of the hydrodynamic shear plane do not. We obtain a reasonable fit to the mobility data by assuming that all ganglioside head groups project 2.5 nm from the bilayer and all fixed charges are in a plane 1 nm from the bilayer surface. We tested the latter assumption by estimating the surface potentials of PC/ganglioside bilayers using four techniques: we made 31P nuclear magnetic resonance, fluorescence, electron spin resonance, and conductance measurements. The results are qualitatively consistent with our assumption. PMID:3697476

  18. On the numerical treatment of nonlinear source terms in reaction-convection equations

    NASA Technical Reports Server (NTRS)

    Lafon, A.; Yee, H. C.

    1992-01-01

    The objectives of this paper are to investigate how various numerical treatments of the nonlinear source term in a model reaction-convection equation can affect the stability of steady-state numerical solutions and to show under what conditions the conventional linearized analysis breaks down. The underlying goal is to provide part of the basic building blocks toward the ultimate goal of constructing suitable numerical schemes for hypersonic reacting flows, combustions and certain turbulence models in compressible Navier-Stokes computations. It can be shown that nonlinear analysis uncovers much of the nonlinear phenomena which linearized analysis is not capable of predicting in a model reaction-convection equation.

  19. Choas and instabilities in finite difference approximations to nonlinear differential equations

    SciTech Connect

    Cloutman, L. D., LLNL

    1998-07-01

    The numerical solution of time-dependent ordinary and partial differential equations by finite difference techniques is a common task in computational physics and engineering The rate equations for chemical kinetics in combustion modeling are an important example. They not only are nonlinear, but they tend to be stiff, which makes their solution a challenge for transient problems. We show that one must be very careful how such equations are solved In addition to the danger of large time-marching errors, there can be unphysical chaotic solutions that remain numerically stable for a range of time steps that depends on the particular finite difference method used We point out that the solutions of the finite difference equations converge to those of the differential equations only in the limit as the time step approaches zero for stable and consistent finite difference approximations The chaotic behavior observed for finite time steps in some nonlinear difference equations is unrelated to solutions of the differential equations, but is connected with the onset of numerical instabilities of the finite difference equations This behavior suggests that the use of the theory of chaos in nonlinear iterated maps may be useful in stability anlaysis of finite difference approximations to nonlinear differential equations, providing more stringent time step limits than the formal linear stability analysis that tests only for unbounded solutions This observation implies that apparently stable numerical solutions of nonlinear differential equations by finite difference techniques may in fact be contaminated (if not dominated) by nonphysical chaotic parasitic solutions that degrade the accuracy of the numerical solution We demonstrate this phenomenon with some solutions of the logistic equation and a simple two-dimensional computational fluid dynamics example

  20. Using Numerical Solutions in the Fourier Method for the Fokker-Planck-Kolmogorov Equation in the Analysis of First-Order Stochastic Nonlinear Systems for Nonlinear Detectors

    NASA Astrophysics Data System (ADS)

    Nevolin, V. I.

    2003-04-01

    We present a method for analyzing the characteristics of nonlinear detectors using the algorithms of first-order nonlinear differential equations. This method is based on numerical solutions of the Fokker-Planck-Kolmogorov (FPK) equations in the form of series of functions over Hermite-Chebyshev polynomials for both nonlinear systems and their linear counterparts. The results of the solutions for the linear case are extended to nonlinear systems in a recurrent way.

  1. Exact Solutions for N-Coupled Nonlinear Schrödinger Equations With Variable Coefficients

    NASA Astrophysics Data System (ADS)

    Tang, Bo; Fan, Yingzhe; Wang, Jixiu; Chen, Shijun

    2016-07-01

    In this paper, based on similarity transformation and auxiliary equation method, we construct many exact solutions of N-coupled nonlinear Schrödinger equations with variable coefficients, which include soliton solutions, combined soliton solutions, triangular periodic solutions, Jacobi elliptic function solutions and combined Jacobi elliptic function solutions. These solutions may give insight into many considerable physical processes.

  2. Nonlinear Drift-Kinetic Equation in the Presence of a Circularly Polarized Wave

    NASA Technical Reports Server (NTRS)

    Khazanov, G. V.; Krivorutsky, E. N.; Whitaker, Ann F. (Technical Monitor)

    2001-01-01

    Equations of the single particle motion and nonlinear kinetic equation for plasma in the presence of a circularly polarized wave of arbitrary frequency in the drift approximation are presented. The nonstationarity and inhomogeneity of the plasma-wave system are taken into account.

  3. Nonlinear Drift-Kinetic Equation in the Presence of a Circularly Polarized Wave

    NASA Technical Reports Server (NTRS)

    Khazanov, G. V.; Krivorutsky, E. N.; Six, N. Frank (Technical Monitor)

    2002-01-01

    Equations of the single particle motion and nonlinear kinetic equation for plasma in the presence of a circularly polarized wave of arbitrary frequency in the drift approximation are presented. The nonstationarity and inhomogeneity of the plasma-wave system are taken into account. The time dependent part of the ponderomotive force is discussed.

  4. Boundedness of solutions for non-linear quasi-periodic differential equations with Liouvillean frequency

    NASA Astrophysics Data System (ADS)

    Wang, Jing; You, Jiangong

    2016-07-01

    We study the boundedness of solutions for non-linear quasi-periodic differential equations with Liouvillean frequencies. We proved that if the forcing is quasi-periodic in time with two frequencies which is not super-Liouvillean, then all solutions of the equation are bounded. The proof is based on action-angle variables and modified KAM theory.

  5. New solutions for two integrable cases of a generalized fifth-order nonlinear equation

    NASA Astrophysics Data System (ADS)

    Wazwaz, Abdul-Majid

    2015-05-01

    Multiple-complexiton solutions for a new generalized fifth-order nonlinear integrable equation are constructed with the help of the Hirota's method and the simplified Hirota's method. By extending the real parameters into complex parameters, nonsingular complexiton solutions are obtained for two specific coefficients of the new generalized equation.

  6. State-Dependent Riccati Equation Regulation of Systems with State and Control Nonlinearities

    NASA Technical Reports Server (NTRS)

    Beeler, Scott C.; Cox, David E. (Technical Monitor)

    2004-01-01

    The state-dependent Riccati equations (SDRE) is the basis of a technique for suboptimal feedback control of a nonlinear quadratic regulator (NQR) problem. It is an extension of the Riccati equation used for feedback control of linear problems, with the addition of nonlinearities in the state dynamics of the system resulting in a state-dependent gain matrix as the solution of the equation. In this paper several variations on the SDRE-based method will be considered for the feedback control problem with control nonlinearities. The control nonlinearities may result in complications in the numerical implementation of the control, which the different versions of the SDRE method must try to overcome. The control methods will be applied to three test problems and their resulting performance analyzed.

  7. Nonlinear tunneling of optical soliton in 3 coupled NLS equation with symbolic computation

    NASA Astrophysics Data System (ADS)

    Mani Rajan, M. S.; Mahalingam, A.; Uthayakumar, A.

    2014-07-01

    We investigated the soliton solution for N coupled nonlinear Schrödinger (CNLS) equations. These equations are coupled due to the cross-phase-modulation (CPM). Lax pair of this system is obtained via the Ablowitz-Kaup-Newell-Segur (AKNS) scheme and the corresponding Darboux transformation is constructed to derive the soliton solution. One and two soliton solutions are generated. Using two soliton solutions of 3 CNLS equation, nonlinear tunneling of soliton for both with and without exponential background has been discussed. Finally cascade compression of optical soliton through multi-nonlinear barrier has been discussed. The obtained results may have promising applications in all-optical devices based on optical solitons, study of soliton propagation in birefringence fiber systems and optical soliton with distributed dispersion and nonlinearity management.

  8. Construction of the wave operator for non-linear dispersive equations

    NASA Astrophysics Data System (ADS)

    Tsuruta, Kai Erik

    In this thesis, we will study non-linear dispersive equations. The primary focus will be on the construction of the positive-time wave operator for such equations. The positive-time wave operator problem arises in the study of the asymptotics of a partial differential equation. It is a map from a space of initial data X into itself, and is loosely defined as follows: Suppose that for a solution ψlin to the dispersive equation with no non-linearity and initial data ψ +, there exists a unique solution ψ to the non-linear equation with initial data ψ0 such that ψ behaves as ψ lin as t → infinity. Then the wave operator is the map W+ that takes ψ + to ψ0. By its definition, W+ is injective. An important additional question is whether or not the map is also surjective. If so, then every non-linear solution emanating from X behaves, in some sense, linearly as it evolves (this is known as asymptotic completeness). Thus, there is some justification for treating these solutions as their much simpler linear counterparts. The main results presented in this thesis revolve around the construction of the wave operator(s) at critical non-linearities. We will study the "semi-relativistic" Schrodinger equation as well as the Klein-Gordon-Schrodinger system on R2 . In both cases, we will impose fairly general quadratic non-linearities for which conservation laws cannot be relied upon. These non-linearities fall below the scaling required to employ such tools as the Strichartz estimates. We instead adapt the "first iteration method" of Jang, Li, and Zhang to our setting which depends crucially on the critical decay of the non-linear interaction of the linear evolution. To see the critical decay in our problem, careful analysis is needed to treat the regime where one has spatial and/or time resonance.

  9. Traveling Wave Solutions for Nonlinear Differential-Difference Equations of Rational Types

    NASA Astrophysics Data System (ADS)

    İsmail, Aslan

    2016-01-01

    Differential-difference equations are considered to be hybrid systems because the spatial variable n is discrete while the time t is usually kept continuous. Although a considerable amount of research has been carried out in the field of nonlinear differential-difference equations, the majority of the results deal with polynomial types. Limited research has been reported regarding such equations of rational type. In this paper we present an adaptation of the (G‧/G)-expansion method to solve nonlinear rational differential-difference equations. The procedure is demonstrated using two distinct equations. Our approach allows one to construct three types of exact traveling wave solutions (hyperbolic, trigonometric, and rational) by means of the simplified form of the auxiliary equation method with reduced parameters. Our analysis leads to analytic solutions in terms of topological solitons and singular periodic functions as well.

  10. A second order operator splitting method for Allen-Cahn type equations with nonlinear source terms

    NASA Astrophysics Data System (ADS)

    Lee, Hyun Geun; Lee, June-Yub

    2015-08-01

    Allen-Cahn (AC) type equations with nonlinear source terms have been applied to a wide range of problems, for example, the vector-valued AC equation for phase separation and the phase-field equation for dendritic crystal growth. In contrast to the well developed first and second order methods for the AC equation, not many second order methods are suggested for the AC type equations with nonlinear source terms due to the difficulties in dealing with the nonlinear source term numerically. In this paper, we propose a simple and stable second order operator splitting method. A core idea of the method is to decompose the original equation into three subequations with the free-energy evolution term, the heat evolution term, and a nonlinear source term, respectively. It is important to combine these three subequations in proper order to achieve the second order accuracy and stability. We propose a method with a half-time free-energy evolution solver, a half-time heat evolution solver, a full-time midpoint solver for the nonlinear source term, and a half-time heat evolution solver followed by a final half-time free-energy evolution solver. We numerically demonstrate the second order accuracy of the new numerical method through the simulations of the phase separation and the dendritic crystal growth.

  11. Integrability of an inhomogeneous nonlinear Schroedinger equation in Bose-Einstein condensates and fiber optics

    SciTech Connect

    Brugarino, Tommaso; Sciacca, Michele

    2010-09-15

    In this paper, we investigate the integrability of an inhomogeneous nonlinear Schroedinger equation, which has several applications in many branches of physics, as in Bose-Einstein condensates and fiber optics. The main issue deals with Painleve property (PP) and Liouville integrability for a nonlinear Schroedinger-type equation. Solutions of the integrable equation are obtained by means of the Darboux transformation. Finally, some applications on fiber optics and Bose-Einstein condensates are proposed (including Bose-Einstein condensates in three-dimensional in cylindrical symmetry).

  12. A lattice Boltzmann model with an amending function for simulating nonlinear partial differential equations

    NASA Astrophysics Data System (ADS)

    Chen, Lin-Jie; Ma, Chang-Feng

    2010-01-01

    This paper proposes a lattice Boltzmann model with an amending function for one-dimensional nonlinear partial differential equations (NPDEs) in the form ut + αuux + βunux + γuxx + δuxxx + ζuxxxx = 0. This model is different from existing models because it lets the time step be equivalent to the square of the space step and derives higher accuracy and nonlinear terms in NPDEs. With the Chapman-Enskog expansion, the governing evolution equation is recovered correctly from the continuous Boltzmann equation. The numerical results agree well with the analytical solutions.

  13. Equations of nonlinear dynamics of elastic shells in cylindrical Eulerian coordinates

    NASA Astrophysics Data System (ADS)

    Zubov, L. M.

    2016-05-01

    The equations of dynamics of elastic shells subjected to large deformations are formulated. The Eulerian coordinates on a circular cylinder and time are accepted as independent variables, and one of the unknown functions is the distance from a point of the shell surface to the cylinder axis. The equations of dynamics of nonlinearly elastic shells in the Eulerian coordinates are convenient for exact formulation of the problem on the interaction of strongly deformable shells with moving fluids and gases. The equations obtained can be used for dynamic calculations of fluids and gases flowings in pipelines, blood vessels, hoses, and other nonlinearly deformable thin-walled tubular elements of constructions.

  14. Strategies on improving the micro-fluidic devices using the nonlinear electro- and thermo-kinetic phenomena.

    PubMed

    Sugioka, Hideyuki

    2015-12-01

    Surface science is key to innovations on microfluidics, smart materials, and future non-equilibrium systems. However, challenging issues still exist in this field. In this article, from the viewpoint of the fundamental design, we will briefly review our strategies on improving the micro-fluidic devices using the nonlinear electro- and thermo-kinetic phenomena. In particular, we will review the microfluidic applications using ICEO, the correction based on the ion-conserving Poisson-Boltzmann theory, the direct simulation on ICEO, and the new horizon such as nonlinear thermo-kinetic phenomena and the artificial cilia. PMID:26482087

  15. Describing function method applied to solution of nonlinear heat conduction equation

    SciTech Connect

    Nassersharif, B. )

    1989-08-01

    Describing functions have traditionally been used to obtain the solutions of systems of ordinary differential equations. The describing function concept has been extended to include the non-linear, distributed parameter solid heat conduction equation. A four-step solution algorithm is presented that may be applicable to many classes of nonlinear partial differential equations. As a specific application of the solution technique, the one-dimensional nonlinear transient heat conduction equation in an annular fuel pin is considered. A computer program was written to calculate one-dimensional transient heat conduction in annular cylindrical geometry. It is found that the quasi-linearization used in the describing function method is as accurate as and faster than true linearization methods.

  16. Numerical solutions of Maxwell's equations for nonlinear-optical pulse propagation

    NASA Astrophysics Data System (ADS)

    Hile, Cheryl V.; Kath, William L.

    1996-06-01

    A model and numerical solutions of Maxwell's equations describing the propagation of short, solitonlike pulses in nonlinear dispersive optical media are presented. The model includes linear dispersion expressed in the time domain, a Kerr nonlinearity, and a coordinate system moving with the group velocity of the pulse. Numerical solutions of Maxwell's equations are presented for circularly polarized and linearly polarized electromagnetic fields. When the electromagnetic fields are assumed to be circularly polarized, numerical solutions are compared directly with solutions of the nonlinear Schrodinger (NLS) equation. These comparisons show good agreement and indicate that the NLS equation provides an excellent model for short-pulse propagation. When the electromagnetic fields are assumed to be linearly polarized, the propagation of daughter pulses, small-amplitude pulses at three times the frequency of the solitonlike pulse, are observed in the numerical solution. These daughter pulses are shown to be the direct result of third harmonics generated by the main, solitonlike, pulse.

  17. Study of coupled nonlinear partial differential equations for finding exact analytical solutions

    PubMed Central

    Khan, Kamruzzaman; Akbar, M. Ali; Koppelaar, H.

    2015-01-01

    Exact solutions of nonlinear partial differential equations (NPDEs) are obtained via the enhanced (G′/G)-expansion method. The method is subsequently applied to find exact solutions of the Drinfel'd–Sokolov–Wilson (DSW) equation and the (2+1)-dimensional Painlevé integrable Burgers (PIB) equation. The efficiency of this method for finding these exact solutions is demonstrated. The method is effective and applicable for many other NPDEs in mathematical physics. PMID:26587256

  18. Application of variational and Galerkin equations to linear and nonlinear finite element analysis

    NASA Technical Reports Server (NTRS)

    Yu, Y.-Y.

    1974-01-01

    The paper discusses the application of the variational equation to nonlinear finite element analysis. The problem of beam vibration with large deflection is considered. The variational equation is shown to be flexible in both the solution of a general problem and in the finite element formulation. Difficulties are shown to arise when Galerkin's equations are used in the consideration of the finite element formulation of two-dimensional linear elasticity and of the linear classical beam.

  19. Nonlinear Schroedinger equation and the Bogolyubov-Whitham method of averaging

    SciTech Connect

    Pavlov, M.V.

    1987-12-01

    An averaging is investigated for the nonlinear Schroedinger equation using the technique of finite-gap averaging. For the single-gap case, the results are given explicitly. Some characteristics of the original equation needed for applied calculations are averaged. Finally, recursion and functional formulas connecting the densities of the integrals of the motion of the Schroedinger equation, the fluxes, and the variational derivatives are given.

  20. New compacton soliton solutions and solitary patterns solutions of nonlinearly dispersive Boussinesq equations

    NASA Astrophysics Data System (ADS)

    Yan, Zhenya; Bluman, George

    2002-11-01

    The special exact solutions of nonlinearly dispersive Boussinesq equations (called B( m, n) equations), utt- uxx- a( un) xx+ b( um) xxxx=0, is investigated by using four direct ansatze. As a result, abundant new compactons: solitons with the absence of infinite wings, solitary patterns solutions having infinite slopes or cups, solitary waves and singular periodic wave solutions of these two equations are obtained. The variant is extended to include linear dispersion to support compactons and solitary patterns in the linearly dispersive Boussinesq equations with m=1. Moreover, another new compacton solution of the special case, B(2,2) equation, is also found.

  1. Numerical solution of nonlinear partial differential equations of mixed type. [finite difference approximation

    NASA Technical Reports Server (NTRS)

    Jameson, A.

    1976-01-01

    A review is presented of some recently developed numerical methods for the solution of nonlinear equations of mixed type. The methods considered use finite difference approximations to the differential equation. Central difference formulas are employed in the subsonic zone and upwind difference formulas are used in the supersonic zone. The relaxation method for the small disturbance equation is discussed and a description is given of difference schemes for the potential flow equation in quasi-linear form. Attention is also given to difference schemes for the potential flow equation in conservation form, the analysis of relaxation schemes by the time dependent analogy, the accelerated iterative method, and three-dimensional calculations.

  2. Nonlinear static and dynamic analysis of beam structures using fully intrinsic equations

    NASA Astrophysics Data System (ADS)

    Sotoudeh, Zahra

    2011-07-01

    Beams are structural members with one dimension much larger than the other two. Examples of beams include propeller blades, helicopter rotor blades, and high aspect-ratio aircraft wings in aerospace engineering; shafts and wind turbine blades in mechanical engineering; towers, highways and bridges in civil engineering; and DNA modeling in biomedical engineering. Beam analysis includes two sets of equations: a generally linear two-dimensional problem over the cross-sectional plane and a nonlinear, global one-dimensional analysis. This research work deals with a relatively new set of equations for one-dimensional beam analysis, namely the so-called fully intrinsic equations. Fully intrinsic equations comprise a set of geometrically exact, nonlinear, first-order partial differential equations that is suitable for analyzing initially curved and twisted anisotropic beams. A fully intrinsic formulation is devoid of displacement and rotation variables, making it especially attractive because of the absence of singularities, infinite-degree nonlinearities, and other undesirable features associated with finite rotation variables. In spite of the advantages of these equations, using them with certain boundary conditions presents significant challenges. This research work will take a broad look at these challenges of modeling various boundary conditions when using the fully intrinsic equations. Hopefully it will clear the path for wider and easier use of the fully intrinsic equations in future research. This work also includes application of fully intrinsic equations in structural analysis of joined-wing aircraft, different rotor blade configuration and LCO analysis of HALE aircraft.

  3. Global well-posedness and scattering for nonlinear Schrödinger equations with combined nonlinearities in the radial case

    NASA Astrophysics Data System (ADS)

    Cheng, Xing; Miao, Changxing; Zhao, Lifeng

    2016-09-01

    We consider the Cauchy problem for the nonlinear Schrödinger equation with combined nonlinearities, one of which is defocusing mass-critical and the other is focusing energy-critical or energy-subcritical. The threshold is given by means of variational argument. We establish the profile decomposition in H1 (Rd) and then utilize the concentration-compactness method to show the global wellposedness and scattering versus blowup in H1 (Rd) below the threshold for radial data when d ≤ 4.

  4. Study of nonlinear waves described by the cubic Schroedinger equation

    SciTech Connect

    Walstead, A.E.

    1980-03-12

    The cubic Schroedinger equation (CSE) is ubiquitous as a model equation for the long-time evolution of finite-amplitude near-monochromatic dispersive waves. It incorporates the effects of the radiation field pressure on the constitutive properties of the supporting medium in a self-consistent manner. The properties of the uniformly transiating periodic wave solutions of the one-dimensional CSE are studied here. These (so-called cnoidal) waves are characterized by the values of four parameters. Whitham's averaged variational principle is used to derive a system of quasilinear evolution equations (the modulational equations) for the values of these parameters when they are slowly varying in space and time. Explicit expressions for the characteristic velocities of the modulational equations are obtained for the full set of cnoidal waves. Riemann invariants are obtained for several limits for the stable case, and growth rates are obtained for several limits, including the solitary wave chain, for the unstable case. The results for several nontrivial limiting cases agree with those obtained by independent methods by others. The dynamics of the CSE generalized to two spatial dimensions are studied for the unstable case. A large class of similarity solutions with cylindrical symmetry are obtained systematically using infinitesimal transformation group techniques. The methods are adapted to obtain the symmetries of the action functional of the CSE and to deduce nine integral invariants. A numerical study of the self-similar solutions reveals that they are modulationally unstable and that singularities dominate the dynamics of the CSE in two dimensions. The CSE is derived using perturbation theory for a specific problem in plasma physics: the evolution of the envelope of a near-monochromatic electromagnetic wave in a cold magnetized plasma. 13 figures, 2 tables.

  5. Polynomial elimination theory and non-linear stability analysis for the Euler equations

    NASA Technical Reports Server (NTRS)

    Kennon, S. R.; Dulikravich, G. S.; Jespersen, D. C.

    1986-01-01

    Numerical methods are presented that exploit the polynomial properties of discretizations of the Euler equations. It is noted that most finite difference or finite volume discretizations of the steady-state Euler equations produce a polynomial system of equations to be solved. These equations are solved using classical polynomial elimination theory, with some innovative modifications. This paper also presents some preliminary results of a new non-linear stability analysis technique. This technique is applicable to determining the stability of polynomial iterative schemes. Results are presented for applying the elimination technique to a one-dimensional test case. For this test case, the exact solution is computed in three iterations. The non-linear stability analysis is applied to determine the optimal time step for solving Burgers' equation using the MacCormack scheme. The estimated optimal time step is very close to the time step that arises from a linear stability analysis.

  6. Entropy Solutions to a Genuinely Nonlinear Ultraparabolic Kolmogorov-Type Equation

    NASA Astrophysics Data System (ADS)

    Sazhenkov, S. A.

    2007-04-01

    We consider a non-isotropic convection-diffusion-reaction equation of a very general form, in which the diffusion matrix is nonnegative and may change its rank depending on temporal and spatial variables, and convection and reaction terms may be discontinuous. This equation arises in astrophysics and plasma physics, in fluid dynamics, mathematical biology and financial mathematics. We assume that the equation a priori admits the maximum principle and is genuinely nonlinear, and we prove that there exists at least one entropy solution and that the genuinely nonlinear structure of the equation rules out fine oscillatory regimes in entropy solutions. The proofs rely on the method of kinetic equation and on theory of H-measures.

  7. Nondimensional Parameters and Equations for Nonlinear and Bifurcation Analyses of Thin Anisotropic Quasi-Shallow Shells

    NASA Technical Reports Server (NTRS)

    Nemeth, Michael P.

    2010-01-01

    A comprehensive development of nondimensional parameters and equations for nonlinear and bifurcations analyses of quasi-shallow shells, based on the Donnell-Mushtari-Vlasov theory for thin anisotropic shells, is presented. A complete set of field equations for geometrically imperfect shells is presented in terms general of lines-of-curvature coordinates. A systematic nondimensionalization of these equations is developed, several new nondimensional parameters are defined, and a comprehensive stress-function formulation is presented that includes variational principles for equilibrium and compatibility. Bifurcation analysis is applied to the nondimensional nonlinear field equations and a comprehensive set of bifurcation equations are presented. An extensive collection of tables and figures are presented that show the effects of lamina material properties and stacking sequence on the nondimensional parameters.

  8. Dromion interactions of (2+1)-dimensional nonlinear evolution equations

    PubMed

    Ruan; Chen

    2000-10-01

    Starting from two line solitons, the solution of integrable (2+1)-dimensional mKdV system and KdV system in bilinear form yields a dromion solution or a "Solitoff" solution. Such a dromion solution is localized in all directions and the Solitoff solution decays exponentially in all directions except a preferred one for the physical field or a suitable potential. The interactions between two dromions and between the dromion and Solitoff are studied by the method of figure analysis for a (2+1)-dimensional modified KdV equation and a (2+1)-dimensional KdV type equation. Our analysis shows that the interactions between two dromions may be elastic or inelastic for different forms of solutions. PMID:11089133

  9. Solutions of perturbed p-Laplacian equations with critical nonlinearity

    NASA Astrophysics Data System (ADS)

    Wang, Chunhua; Wang, Jiangtao

    2013-01-01

    In this paper, we study a perturbed p-Laplacian equation. Under some given conditions on V(x), we prove that the equation has at least one positive solution provided that ɛ le E; for any n^{*}in {N}, it has at least n* pairs solutions if ɛ le E_{n^{*}}; and suppose there exists an orthogonal involution T:{R}NrArr {R}N such that V(x), P(x), and K(x) are T-invariant, then it has at least one pair of solutions, which change sign exactly once provided that ɛ le E, where E and E_{n^{*}} are sufficiently small positive numbers. Moreover, these solutions uɛ → 0 in W^{1,p}({R}N) as ɛ → 0.

  10. Dynamics of cubic–quintic nonlinear Schrödinger equation with different parameters

    NASA Astrophysics Data System (ADS)

    Wei, Hua; Xue-Shen, Liu; Shi-Xing, Liu

    2016-05-01

    We study the dynamics of the cubic–quintic nonlinear Schrödinger equation by the symplectic method. The behaviors of the equation are discussed with harmonically modulated initial conditions, and the contributions from the quintic term are discussed. We observe the elliptic orbit, homoclinic orbit crossing, quasirecurrence, and stochastic motion with different nonlinear parameters in this system. Numerical simulations show that the changing processes of the motion of the system and the trajectories in the phase space are various for different cubic nonlinear parameters with the increase of the quintic nonlinear parameter. Project supported by the National Natural Science Foundation of China (Grant Nos. 11301350, 11472124, and 11271158) and the Doctor Start-up Fund in Liaoning Province, China (Grant No. 20141050).

  11. Higher-order semirational solutions and nonlinear wave interactions for a derivative nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Wang, Lei; Zhu, Yu-Jie; Wang, Zi-Zhe; Qi, Feng-Hua; Guo, Rui

    2016-04-01

    We present the semirational solution in terms of the determinant form for the derivative nonlinear Schrödinger equation. It describes the nonlinear combinations of breathers and rogue waves (RWs). We show here that the solution appears as a mixture of polynomials with exponential functions. The k-order semirational solution includes k - 1 types of nonlinear superpositions, i.e., the l-order RW and (k-l)-order breather for l = 1 , 2 , … , k - 1 . By adjusting the shift and spectral parameters, we display various patterns of the semirational solutions for describing the interactions among the RWs and breathers. We find that k-order RW can be derived from a l-order RW interacting with 1/2(k - l) (k + l + 1) neighboring elements of a (k - l)-order breather for l = 1 , 2 , … , k - 1 .

  12. Initial Value Problem Solution of Nonlinear Shallow Water-Wave Equations

    SciTech Connect

    Kanoglu, Utku; Synolakis, Costas

    2006-10-06

    The initial value problem solution of the nonlinear shallow water-wave equations is developed under initial waveforms with and without velocity. We present a solution method based on a hodograph-type transformation to reduce the nonlinear shallow water-wave equations into a second-order linear partial differential equation and we solve its initial value problem. The proposed solution method overcomes earlier limitation of small waveheights when the initial velocity is nonzero, and the definition of the initial conditions in the physical and transform spaces is consistent. Our solution not only allows for evaluation of differences in predictions when specifying an exact initial velocity based on nonlinear theory and its linear approximation, which has been controversial in geophysical practice, but also helps clarify the differences in runup observed during the 2004 and 2005 Sumatran tsunamigenic earthquakes.

  13. An ansatz for solving nonlinear partial differential equations in mathematical physics.

    PubMed

    Akbar, M Ali; Ali, Norhashidah Hj Mohd

    2016-01-01

    In this article, we introduce an ansatz involving exact traveling wave solutions to nonlinear partial differential equations. To obtain wave solutions using direct method, the choice of an appropriate ansatz is of great importance. We apply this ansatz to examine new and further general traveling wave solutions to the (1+1)-dimensional modified Benjamin-Bona-Mahony equation. Abundant traveling wave solutions are derived including solitons, singular solitons, periodic solutions and general solitary wave solutions. The solutions emphasize the nobility of this ansatz in providing distinct solutions to various tangible phenomena in nonlinear science and engineering. The ansatz could be more efficient tool to deal with higher dimensional nonlinear evolution equations which frequently arise in many real world physical problems. PMID:26783508

  14. Coding of Nonlinear States for NLS-Type Equations with Periodic Potential

    NASA Astrophysics Data System (ADS)

    Alfimov, G. L.; Avramenko, A. I.

    The problem of complete description of nonlinear states for NLS-type equations with periodic potential is considered. We show that in some cases all nonlinear states for equations of such kind can be coded by bi-infinite sequences of symbols of N-symbol alphabet (words). Sufficient conditions for one-to-one correspondence between the set of nonlinear states and the set of these bi-infinite words are given in the form convenient for numerical verification (Hypotheses 1-3). We report on numerical check of these hypotheses for the case of Gross-Pitaevskii equation with cosine potential and indicate regions in the space of governing parameters where this coding is possible.

  15. Analytical solutions and rogue waves in (3+1)-dimensional nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Ma, Zheng-Yi; Ma, Song-Hua

    2012-03-01

    Analytical solutions in terms of rational-like functions are presented for a (3+1)-dimensional nonlinear Schrödinger equation with time-varying coefficients and a harmonica potential using the similarity transformation and a direct ansatz. Several free functions of time t are involved to generate abundant wave structures. Three types of elementary functions are chosen to exhibit the corresponding nonlinear rogue wave propagations.

  16. Bistability and instability of dark-antidark solitons in the cubic-quintic nonlinear Schroedinger equation

    SciTech Connect

    Crosta, M.; Fratalocchi, A.; Trillo, S.

    2011-12-15

    We characterize the full family of soliton solutions sitting over a background plane wave and ruled by the cubic-quintic nonlinear Schroedinger equation in the regime where a quintic focusing term represents a saturation of the cubic defocusing nonlinearity. We discuss the existence and properties of solitons in terms of catastrophe theory and fully characterize bistability and instabilities of the dark-antidark pairs, revealing mechanisms of decay of antidark solitons into dispersive shock waves.

  17. Nonlinear Equations of Equilibrium for Elastic Helicopter or Wind Turbine Blades Undergoing Moderate Deformation

    NASA Technical Reports Server (NTRS)

    Rosen, A.; Friedmann, P. P.

    1978-01-01

    A set of nonlinear equations of equilibrium for an elastic wind turbine or helicopter blades are presented. These equations are derived for the case of small strains and moderate rotations (slopes). The derivation includes several assumptions which are carefully stated. For the convenience of potential users the equations are developed with respect to two different systems of coordinates, the undeformed and the deformed coordinates of the blade. Furthermore, the loads acting on the blade are given in a general form so as to make them suitable for a variety of applications. The equations obtained in the study are compared with those obtained in previous studies.

  18. A class of nonlinear differential equations with fractional integrable impulses

    NASA Astrophysics Data System (ADS)

    Wang, JinRong; Zhang, Yuruo

    2014-09-01

    In this paper, we introduce a new class of impulsive differential equations, which is more suitable to characterize memory processes of the drugs in the bloodstream and the consequent absorption for the body. This fact offers many difficulties in applying the usual methods to analysis and novel techniques in Bielecki's normed Banach spaces and thus makes the study of existence and uniqueness theorems interesting. Meanwhile, new concepts of Bielecki-Ulam's type stability are introduced and generalized Ulam-Hyers-Rassias stability results on a compact interval are established. This is another novelty of this paper. Finally, an interesting example is given to illustrate our theory results.

  19. Modeling taper charge with a non-linear equation

    NASA Technical Reports Server (NTRS)

    Mcdermott, P. P.

    1985-01-01

    Work aimed at modeling the charge voltage and current characteristics of nickel-cadmium cells subject to taper charge is presented. Work reported at previous NASA Battery Workshops has shown that the voltage of cells subject to constant current charge and discharge can be modeled very accurately with the equation: voltage = A + (B/(C-X)) + De to the -Ex where A, B, D, and E are fit parameters and x is amp-hr of charge removed during discharge or returned during charge. In a constant current regime, x is also equivalent to time on charge or discharge.

  20. Method of Multiple Scales and Travelling Wave Solutions for (2+1)-Dimensional KdV Type Nonlinear Evolution Equations

    NASA Astrophysics Data System (ADS)

    Ayhan, Burcu; Özer, M. Naci; Bekir, Ahmet

    2016-08-01

    In this article, we applied the method of multiple scales for Korteweg-de Vries (KdV) type equations and we derived nonlinear Schrödinger (NLS) type equations. So we get a relation between KdV type equations and NLS type equations. In addition, exact solutions were found for KdV type equations. The ( G'} over G )-expansion methods and the ( {G'} over G, {1 over G}} )-expansion methods were proposed to establish new exact solutions for KdV type differential equations. We obtained periodic and hyperbolic function solutions for these equations. These methods are very effective for getting travelling wave solutions of nonlinear evolution equations (NEEs).

  1. Nonlinear tunneling of optical soliton in 3 coupled NLS equation with symbolic computation

    SciTech Connect

    Mani Rajan, M.S.; Mahalingam, A.; Uthayakumar, A.

    2014-07-15

    We investigated the soliton solution for N coupled nonlinear Schrödinger (CNLS) equations. These equations are coupled due to the cross-phase-modulation (CPM). Lax pair of this system is obtained via the Ablowitz–Kaup–Newell–Segur (AKNS) scheme and the corresponding Darboux transformation is constructed to derive the soliton solution. One and two soliton solutions are generated. Using two soliton solutions of 3 CNLS equation, nonlinear tunneling of soliton for both with and without exponential background has been discussed. Finally cascade compression of optical soliton through multi-nonlinear barrier has been discussed. The obtained results may have promising applications in all-optical devices based on optical solitons, study of soliton propagation in birefringence fiber systems and optical soliton with distributed dispersion and nonlinearity management. -- Highlights: •We consider the nonlinear tunneling of soliton in birefringence fiber. •3-coupled NLS (CNLS) equation with variable coefficients is considered. •Two soliton solutions are obtained via Darboux transformation using constructed Lax pair. •Soliton tunneling through dispersion barrier and well are investigated. •Finally, cascade compression of soliton has been achieved.

  2. Green's function-stochastic methods framework for probing nonlinear evolution problems: Burger's equation, the nonlinear Schroedinger's equation, and hydrodynamic organization of near-molecular-scale vorticity

    SciTech Connect

    Keanini, R.G.

    2011-04-15

    Research Highlights: > Systematic approach for physically probing nonlinear and random evolution problems. > Evolution of vortex sheets corresponds to evolution of an Ornstein-Uhlenbeck process. > Organization of near-molecular scale vorticity mediated by hydrodynamic modes. > Framework allows calculation of vorticity evolution within random strain fields. - Abstract: A framework which combines Green's function (GF) methods and techniques from the theory of stochastic processes is proposed for tackling nonlinear evolution problems. The framework, established by a series of easy-to-derive equivalences between Green's function and stochastic representative solutions of linear drift-diffusion problems, provides a flexible structure within which nonlinear evolution problems can be analyzed and physically probed. As a preliminary test bed, two canonical, nonlinear evolution problems - Burgers' equation and the nonlinear Schroedinger's equation - are first treated. In the first case, the framework provides a rigorous, probabilistic derivation of the well known Cole-Hopf ansatz. Likewise, in the second, the machinery allows systematic recovery of a known soliton solution. The framework is then applied to a fairly extensive exploration of physical features underlying evolution of randomly stretched and advected Burger's vortex sheets. Here, the governing vorticity equation corresponds to the Fokker-Planck equation of an Ornstein-Uhlenbeck process, a correspondence that motivates an investigation of sub-sheet vorticity evolution and organization. Under the assumption that weak hydrodynamic fluctuations organize disordered, near-molecular-scale, sub-sheet vorticity, it is shown that these modes consist of two weakly damped counter-propagating cross-sheet acoustic modes, a diffusive cross-sheet shear mode, and a diffusive cross-sheet entropy mode. Once a consistent picture of in-sheet vorticity evolution is established, a number of analytical results, describing the motion

  3. Determining mixed linear-nonlinear coupled differential equations from multivariate discrete time series sequences

    NASA Astrophysics Data System (ADS)

    Irving, A. D.; Dewson, T.

    1997-02-01

    A new method is described for extracting mixed linear-nonlinear coupled differential equations from multivariate discrete time series data. It is assumed in the present work that the solution of the coupled ordinary differential equations can be represented as a multivariate Volterra functional expansion. A tractable hierarchy of moment equations is generated by operating on a suitably truncated Volterra functional expansion. The hierarchy facilitates the calculation of the coefficients of the coupled differential equations. In order to demonstrate the method's ability to accurately estimate the coefficients of the governing differential equations, it is applied to data derived from the numerical solution of the Lorenz equations with additive noise. The method is then used to construct a dynamic global mid- and high-magnetic latitude ionospheric model where nonlinear phenomena such as period doubling and quenching occur. It is shown that the estimated inhomogeneous coupled second-order differential equation model for the ionospheric foF2 peak plasma density can accurately forecast the future behaviour of a set of ionosonde stations which encompass the earth. Finally, the method is used to forecast the future behaviour of a portfolio of Japanese common stock prices. The hierarchy method can be used to characterise the observed behaviour of a wide class of coupled linear and mixed linear-nonlinear phenomena.

  4. Exact multiplicity of positive solutions for a p-Laplacian equation with positive convex nonlinearity

    NASA Astrophysics Data System (ADS)

    An, Yulian; Kim, Chan-Gyun; Shi, Junping

    2016-02-01

    A p-Laplacian nonlinear elliptic equation with positive and p-superlinear nonlinearity and Dirichlet boundary condition is considered. We first prove the existence of two positive solutions when the spatial domain is symmetric or strictly convex by using a priori estimates and topological degree theory. For the ball domain in RN with N ≥ 4 and the case that 1 < p < 2, we prove that the equation has exactly two positive solutions when a parameter is less than a critical value. Bifurcation theory and linearization techniques are used in the proof of the second result.

  5. Combined solitons in generalized coupled mode equations of a nonlinear optical Bragg grating

    SciTech Connect

    Alatas, Husin

    2007-08-15

    We discuss the existence of combined dark and antidark soliton forms or combined solitons in the generalized coupled mode equations of a nonlinear optical Bragg grating. These solitons are not allowed in the conventional coupled mode equations with uniform nonlinearity and exist outside the linear grating band gap. Their related Hamiltonian phase portrait was briefly reported by de Sterke et al. [Phys. Rev. E 54, 1969 (1996)]. The explicit expressions for the corresponding solitons are presented, as well as their bifurcation process. We demonstrate the unstable propagation of perturbed combined solitons with zero velocity by means of direct numerical integration.

  6. Relativistic superfluidity and vorticity from the nonlinear Klein-Gordon equation

    NASA Astrophysics Data System (ADS)

    Xiong, Chi; Good, Michael R. R.; Guo, Yulong; Liu, Xiaopei; Huang, Kerson

    2014-12-01

    We investigate superfluidity, and the mechanism for creation of quantized vortices, in the relativistic regime. The general framework is a nonlinear Klein-Gordon equation in curved spacetime for a complex scalar field, whose phase dynamics gives rise to superfluidity. The mechanisms discussed are local inertial forces (Coriolis and centrifugal), and current-current interaction with an external source. The primary application is to cosmology, but we also discuss the reduction to the nonrelativistic nonlinear Schrödinger equation, which is widely used in describing superfluidity and vorticity in liquid helium and cold-trapped atomic gases.

  7. Nonlinear Schrödinger equation in foundations: summary of 4 catches

    NASA Astrophysics Data System (ADS)

    Diósi, Lajos

    2016-03-01

    Fundamental modifications of the standard Schrödinger equation by additional nonlinear terms have been considered for various purposes over the recent decades. It came as a surprise when, inverting Abner Shimonyi's observation of “peaceful coexistence” between standard quantum mechanics and relativity, N. Gisin proved in 1990 that any (deterministic) nonlinear Schrödinger equation would allow for superluminal communication. This is by now the most spectacular and best known anomaly. We discuss further anomalies, simple but foundational, less spectacular but not less dramatic.

  8. Second order non-linear equations of motion for spinning highly flexible line elements

    NASA Technical Reports Server (NTRS)

    Salama, M.; Trubert, M.; Essawi, M.; Utku, S.

    1982-01-01

    The second order nonlinear equations of motion are formulated for spinning line elements having little or no intrinsic structural stiffness. The derivation is based on the extended Hamilton's principle and includes the effect of initial geometric imperfections (axial, curvature, and twist) on the line element dynamics. For comparison with previous work, the nonlinear equations are reduced to a linearized form frequently found in the literature. The comparison revealed several new spin-stiffening terms that have not been previously identified and/or retained. They combine geometric imperfections, rotary inertia, Coriolis, and gyroscopic terms.

  9. Pair-tunneling induced localized waves in a vector nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Zhao, Li-Chen; Ling, Liming; Yang, Zhan-Ying; Liu, Jie

    2015-06-01

    We investigate localized waves of coupled two-mode nonlinear Schrödinger equations with a pair-tunneling term representing strongly interacting particles can tunnel between the modes as a fragmented pair. Facilitated by Darboux transformation, we have derived exact solution of nonlinear vector waves such as bright solitons, Kuznetsov-Ma soliton, Akhmediev breathers and rogue waves and demonstrated their interesting temporal-spatial structures. A phase diagram that demarcates the parameter ranges of the nonlinear waves is obtained. Possibilities to observe these localized waves are discussed in a two species Bose-Einstein condensate.

  10. Use of Picard and Newton iteration for solving nonlinear ground water flow equations

    USGS Publications Warehouse

    Mehl, S.

    2006-01-01

    This study examines the use of Picard and Newton iteration to solve the nonlinear, saturated ground water flow equation. Here, a simple three-node problem is used to demonstrate the convergence difficulties that can arise when solving the nonlinear, saturated ground water flow equation in both homogeneous and heterogeneous systems with and without nonlinear boundary conditions. For these cases, the characteristic types of convergence patterns are examined. Viewing these convergence patterns as orbits of an attractor in a dynamical system provides further insight. It is shown that the nonlinearity that arises from nonlinear head-dependent boundary conditions can cause more convergence difficulties than the nonlinearity that arises from flow in an unconfined aquifer. Furthermore, the effects of damping on both convergence and convergence rate are investigated. It is shown that no single strategy is effective for all problems and how understanding pitfalls and merits of several methods can be helpful in overcoming convergence difficulties. Results show that Picard iterations can be a simple and effective method for the solution of nonlinear, saturated ground water flow problems.

  11. Stable dipole solitons and soliton complexes in the nonlinear Schrödinger equation with periodically modulated nonlinearity.

    PubMed

    Lebedev, M E; Alfimov, G L; Malomed, Boris A

    2016-07-01

    We develop a general classification of the infinite number of families of solitons and soliton complexes in the one-dimensional Gross-Pitaevskii/nonlinear Schrödinger equation with a nonlinear lattice pseudopotential, i.e., periodically modulated coefficient in front of the cubic term, which takes both positive and negative local values. This model finds direct implementations in atomic Bose-Einstein condensates and nonlinear optics. The most essential finding is the existence of two branches of dipole solitons (DSs), which feature an antisymmetric shape, being essentially squeezed into a single cell of the nonlinear lattice. This soliton species was not previously considered in nonlinear lattices. We demonstrate that one branch of the DS family (namely, which obeys the Vakhitov-Kolokolov criterion) is stable, while unstable DSs spontaneously transform into stable fundamental solitons (FSs). The results are obtained in numerical and approximate analytical forms, the latter based on the variational approximation. Some stable bound states of FSs are found too. PMID:27475070

  12. Direct test of a nonlinear constitutive equation for simple turbulent shear flows using DNS data

    NASA Astrophysics Data System (ADS)

    Schmitt, François G.

    2007-10-01

    Several nonlinear constitutive equations have been proposed to overcome the limitations of the linear eddy-viscosity models to describe complex turbulent flows. These nonlinear equations have often been compared to experimental data through the outputs of numerical models. Here we perform a priori analysis of nonlinear eddy-viscosity models using direct numerical simulation (DNS) of simple shear flows. In this paper, the constitutive equation is directly checked using a tensor projection which involves several invariants of the flow. This provides a 3 terms development which is exact for 2D flows, and a best approximation for 3D flows. We provide the quadratic nonlinear constitutive equation for the near-wall region of simple shear flows using DNS data, and estimate their coefficients. We show that these coefficients have several common properties for the different simple shear flow databases considered. We also show that in the central region of pipe flows, where the shear rate is very small, the coefficients of the constitutive equation diverge, indicating the failure of this representation for vanishing shears.

  13. Solving nonlinear differential equations of Vanderpol, Rayleigh and Duffing by AGM

    NASA Astrophysics Data System (ADS)

    Akbari, M. R.; Ganji, D. D.; Majidian, A.; Ahmadi, A. R.

    2014-06-01

    In the present paper, three complicated nonlinear differential equations in the field of vibration, which are Vanderpol, Rayleigh and Duffing equations, have been analyzed and solved completely by Algebraic Method (AGM). Investigating this kind of equations is a very hard task to do and the obtained solution is not accurate and reliable. This issue will be emerged after comparing the achieved solutions by numerical method (Runge-Kutte 4th). Based on the comparisons which have been made between the gained solutions by AGM and numerical method, it is possible to indicate that AGM can be successfully applied for various differential equations particularly for difficult ones. The results reveal that this method is not only very effective and simple, but also reliable, and can be applied for other complicated nonlinear problems.

  14. Homotopy Perturbation Transform Method with He's Polynomial for Solution of Coupled Nonlinear Partial Differential Equations

    NASA Astrophysics Data System (ADS)

    Sharma, Dinkar; Singh, Prince; Chauhan, Shubha

    2016-01-01

    In this paper, a combined form of the Laplace transform method with the homotopy perturbation method (HPTM) is applied to solve nonlinear systems of partial differential equations viz. the system of third order KdV Equations and the systems of coupled Burgers' equations in one- and two- dimensions. The nonlinear terms can be easily handled by the use of He's polynomials. The results shows that the HPTM is very efficient, simple and avoids the round-off errors. Four test examples are considered to illustrate the present scheme. Further the results are compared with Homotopy perturbation method (HPM) which shows that this method is a suitable method for solving systems of partial differential equations.

  15. Analytical solutions for non-linear differential equations with the help of a digital computer

    NASA Technical Reports Server (NTRS)

    Cromwell, P. C.

    1964-01-01

    A technique was developed with the help of a digital computer for analytic (algebraic) solutions of autonomous and nonautonomous equations. Two operational transform techniques have been programmed for the solution of these equations. Only relatively simple nonlinear differential equations have been considered. In the cases considered it has been possible to assimilate the secular terms into the solutions. For cases where f(t) is not a bounded function, a direct series solution is developed which can be shown to be an analytic function. All solutions have been checked against results obtained by numerical integration for given initial conditions and constants. It is evident that certain nonlinear differential equations can be solved with the help of a digital computer.

  16. Solution to the nonlinear field equations of ten dimensional supersymmetric Yang-Mills theory

    NASA Astrophysics Data System (ADS)

    Mafra, Carlos R.; Schlotterer, Oliver

    2015-09-01

    In this paper, we present a formal solution to the nonlinear field equations of ten-dimensional super Yang-Mills theory. It is assembled from products of linearized superfields which have been introduced as multiparticle superfields in the context of superstring perturbation theory. Their explicit form follows recursively from the conformal field theory description of the gluon multiplet in the pure spinor superstring. Furthermore, superfields of higher-mass dimensions are defined and their equations of motion are spelled out.

  17. Quasi-periodic solutions in a nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Geng, Jiansheng; Yi, Yingfei

    In this paper, one-dimensional (1D) nonlinear Schrödinger equation iu-u+mu+|u=0 with the periodic boundary condition is considered. It is proved that for each given constant potential m and each prescribed integer N>1, the equation admits a Whitney smooth family of small amplitude, time quasi-periodic solutions with N Diophantine frequencies. The proof is based on a partial Birkhoff normal form reduction and an improved KAM method.

  18. Quasi-periodic solutions of nonlinear beam equation with prescribed frequencies

    NASA Astrophysics Data System (ADS)

    Chang, Jing; Gao, Yixian; Li, Yong

    2015-05-01

    Consider the one dimensional nonlinear beam equation utt + uxxxx + mu + u3 = 0 under Dirichlet boundary conditions. We show that for any m > 0 but a set of small Lebesgue measure, the above equation admits a family of small-amplitude quasi-periodic solutions with n-dimensional Diophantine frequencies. These Diophantine frequencies are the small dilation of a prescribed Diophantine vector. The proofs are based on an infinite dimensional Kolmogorov-Arnold-Moser iteration procedure and a partial Birkhoff normal form.

  19. Hot atom populations in the terrestrial atmosphere. A comparison of the nonlinear and linearized Boltzmann equations

    NASA Astrophysics Data System (ADS)

    Sospedra-Alfonso, Reinel; Shizgal, Bernie D.

    2012-11-01

    We use a finite difference discretization method to solve the space homogeneous, isotropic nonlinear Boltzmann equation. We study the time evolution of the distribution function in relation to the solution of the linearized Boltzmann equation for three different initial conditions. The relaxation process is described in terms of the Laguerre moments and the spectral properties of the linearized collision operator. The motivation is the need to include self-collisions in the study of suprathermal oxygen atoms in the terrestrial exosphere.

  20. Towards a gauge-equivalent magnetic structure of the nonlocal nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Gadzhimuradov, T. A.; Agalarov, A. M.

    2016-06-01

    It is shown that the nonlocal nonlinear Schrödinger equation recently proposed by Ablowitz and Musslimani [Phys. Rev. Lett. 110, 064105 (2013), 10.1103/PhysRevLett.110.064105] is gauge equivalent to the unconventional system of coupled Landau-Lifshitz equations. The first integrals of motion and one-soliton solution of an obtained model are given. The physical and geometrical aspects of model and their effect on expected metamagnetic structures are studied.

  1. Kinetic equations for a density matrix describing nonlinear effects in spectral line wings

    SciTech Connect

    Parkhomenko, A. I. Shalagin, A. M.

    2011-11-15

    Kinetic quantum equations are derived for a density matrix with collision integrals describing nonlinear effects in spectra line wings. These equations take into account the earlier established inequality of the spectral densities of Einstein coefficients for absorption and stimulated radiation emission by a two-level quantum system in the far wing of a spectral line in the case of frequent collisions. The relationship of the absorption and stimulated emission probabilities with the characteristics of radiation and an elementary scattering event is found.

  2. Symmetry Group Analysis of Self-focusing in a Nonlinear Schrodinger Equation in Cylindrical Geometry With Saturating Nonlinearity of a Plasma

    NASA Astrophysics Data System (ADS)

    Dantu, Subbarao; Ramanathan, Uma

    2000-04-01

    The nonlinear Schrodinger equation with saturating nonlinearity like the ponderomotive nonlinearity in a plasma is analysed with the help of Symmetry Group Analysis. The symmetry group of the equation is deduced and a fiber-preserving subgroup of linear transformations are identified that leave such a nonlinear Schrodinger equation invariant. The MACSYMA-based Lie algebra of the symmetry group is realized to the extent possible. The theory results in an ordinary differential equation apart from a dictated beam profile. The resulting ordinary differential equation for self-focusing is compared with similar equations obtained from other existing theories of self-focusing in cylindrical geometry like the moments theory, the variational theory and the modified paraxial theory based on harmonic-oscillator modes. New types of solutions are identified and the limitations of the different methods are indicated.Acknowledgements: Financial assistance of CSIR(India)(Research Project,03(0815)/97/ EMR-II) for this work is acknowledged.

  3. The non-linear coupled spin 2-spin 3 Cotton equation in three dimensions

    NASA Astrophysics Data System (ADS)

    Linander, Hampus; Nilsson, Bengt E. W.

    2016-07-01

    In the context of three-dimensional conformal higher spin theory we derive, in the frame field formulation, the full non-linear spin 3 Cotton equation coupled to spin 2. This is done by solving the corresponding Chern-Simons gauge theory system of equations, that is, using F = 0 to eliminate all auxiliary fields and thus expressing the Cotton equation in terms of just the spin 3 frame field and spin 2 covariant derivatives and tensors (Schouten). In this derivation we neglect the spin 4 and higher spin sectors and approximate the star product commutator by a Poisson bracket. The resulting spin 3 Cotton equation is complicated but can be related to linearized versions in the metric formulation obtained previously by other authors. The expected symmetry (spin 3 "translation", "Lorentz" and "dilatation") properties are verified for Cotton and other relevant tensors but some perhaps unexpected features emerge in the process, in particular in relation to the non-linear equations. We discuss the structure of this non-linear spin 3 Cotton equation but its explicit form is only presented here, in an exact but not completely refined version, in appended files obtained by computer algebra methods. Both the frame field and metric formulations are provided.

  4. On a method for constructing the Lax pairs for nonlinear integrable equations

    NASA Astrophysics Data System (ADS)

    Habibullin, I. T.; Khakimova, A. R.; Poptsova, M. N.

    2016-01-01

    We suggest a direct algorithm for searching the Lax pairs for nonlinear integrable equations. It is effective for both continuous and discrete models. The first operator of the Lax pair corresponding to a given nonlinear equation is found immediately, coinciding with the linearization of the considered nonlinear equation. The second one is obtained as an invariant manifold to the linearized equation. A surprisingly simple relation between the second operator of the Lax pair and the recursion operator is discussed: the recursion operator can immediately be found from the Lax pair. Examples considered in the article are convincing evidence that the found Lax pairs differ from the classical ones. The examples also show that the suggested objects are true Lax pairs which allow the construction of infinite series of conservation laws and hierarchies of higher symmetries. In the case of the hyperbolic type partial differential equation our algorithm is slightly modified; in order to construct the Lax pairs from the invariant manifolds we use the cutting off conditions for the corresponding infinite Laplace sequence. The efficiency of the method is illustrated by application to some equations given in the Svinolupov-Sokolov classification list for which the Lax pairs and the recursion operators have not been found earlier.

  5. Rogue waves for a system of coupled derivative nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Chan, Hiu Ning; Malomed, Boris; Chow, Kwok Wing

    2015-11-01

    Previous works in the literature on water waves have demonstrated that the fourth-order evolution of gravity waves in deep water will be governed by a higher order nonlinear Schrödinger equation. In the presence of two wave trains, the system is described by a higher order coupled nonlinear Schrödinger system. Through a gauge transformation, these evolution equations are reduced to a coupled derivative nonlinear Schrödinger system. The goal here is to study rogue waves, unexpectedly large displacements from an equilibrium position, through the Hirota bilinear transformation theoretically. The connections between the onset of rogue waves and modulation instability are investigated. The range of cubic nonlinearity allowing rogue wave formation is elucidated. Under a finite group velocity mismatch between the two components, the existence regime for rogue waves is extended as compared to the case with a single wave train. The amplification ratio of the amplitude can be higher than that of the single component nonlinear Schrödinger equation. Partial financial support has been provided by the Research Grants Council through contracts HKU711713E and HKU17200815.

  6. The abundant symmetry structure of hierarchies of nonlinear equations obtained by reciprocal links

    NASA Astrophysics Data System (ADS)

    Carillo, Sandra; Fuchssteiner, Benno

    1989-07-01

    Explicit computation for a Kawamoto-type equation shows that there is a rich associated symmetry structure for four separate hierarchies of nonlinear integrodifferential equations. Contrary to the general belief that symmetry groups for nonlinear evolution equations in 1+1 dimensions have to be Abelian, it is shown that, in this case, the symmetry group is noncommutative. Its semisimple part is isomorphic to the affine Lie algebra A(1)1 associated to sl(2,C). In two of the additional hierarchies that were found, an explicit dependence of the independent variable occurs. Surprisingly, the generic invariance for the Kawamoto-type equation obtained in Rogers and Carillo [Phys. Scr. 36, 865 (1987)] via a reciprocal link to the Möbius invariance of the singularity equation of the Kaup-Kupershmidt (KK) equation only holds for one of the additional hierarchies of symmetry groups. Thus the generic invariance is not a universal property for the complete symmetry group of equations obtained by reciprocal links. In addition to these results, the bi-Hamiltonian formulation of the hierarchy is given. A direct Bäcklund transformation between the (KK) hierarchy and the hierarchy of singularity equation for the Caudrey-Dodd-Gibbon-Sawada-Kotera equation is exhibited: This shows that the abundant symmetry structure found for the Kawamoto equation must exist for all fifth-order equations, which are known to be completely integrable since these equations are connected either by Bäcklund transformations or reciprocal links. It is shown that similar results must hold for all hierarchies emerging out of singularity hierarchies via reciprocal links. Furthermore, general aspects of the results are discussed.

  7. Shock wave structure using nonlinear model Boltzmann equations

    NASA Technical Reports Server (NTRS)

    Segal, Ben Maurice

    1971-01-01

    The structure of a strong plane shock wave in a monatomic rarefied perfect gas is one of the simplest problems able to be posed in kinetic theory, and one of the hardest to solve. Its simplicity lies in the absence of solid boundaries, geometrical complications, or internal molecular energy. Its difficulty arises from the great departure of the gas from equilibrium within the shock, which invalidates many of the techniques used successfully elsewhere in kinetic theory. In addition to this theoretical challenge, the modern development of ballistics and hypersonic flight has helped to stimulate extensive theoretical and experimental interest in the shock problem. The experimenters in turn have encountered great difficulties on account of the very small physical dimensions of shocks. In fact, until very recently indeed, any close comparisons of theoretical and experimental shock structure results have been rather unprofitable due to the inadequacies of both theory and experiment. During the last few years this situation has been appreciably improved by development of the Monte Carlo method. This allows idealized 'experiments' to be performed on large computers instead of in wind tunnels, using a known intermolecular force law. The most developed of these methods has been shown to be equivalent theoretically to the Boltzmann equation and to give results which agree extremely closely with measurements of high accuracy. Thus Monte Carlo results not only form the soundest basis for our present theoretical knowledge of shock wave structure, but, for purposes of developing other theories, can also be considered a very valuable experimental resource. However, such results remain very expensive to obtain. In this thesis we develop more economical kinetic theory methods for the approximate prediction of shock structure, and compare our results with those of the Monte Carlo method.

  8. Real analytic quasi-periodic solutions for the derivative nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Geng, Jiansheng; Wu, Jian

    2012-10-01

    In this paper, we show that one dimension derivative nonlinear Schrödinger equation admits a whitney smooth family of small amplitude, real analytic quasi-periodic solutions with two Diophantine frequencies. The proof is based on a partial Birkhoff normal form reduction and an abstract infinite dimensional Kolmogorov-Arnold-Moser (KAM) theorem.

  9. Dynamics of a nonautonomous soliton in a generalized nonlinear Schroedinger equation

    SciTech Connect

    Yang Zhanying; Zhang Tao; Zhao Lichen; Feng Xiaoqiang; Yue Ruihong

    2011-06-15

    We solve a generalized nonautonomous nonlinear Schroedinger equation analytically by performing the Darboux transformation. The precise expressions of the soliton's width, peak, and the trajectory of its wave center are investigated analytically, which symbolize the dynamic behavior of a nonautonomous soliton. These expressions can be conveniently and effectively applied to the management of soliton in many fields.

  10. The method of local linear approximation in the theory of nonlinear functional-differential equations

    SciTech Connect

    Slyusarchuk, Vasilii E

    2010-10-06

    Conditions for the existence of solutions to the nonlinear functional-differential equation (d{sup m}x(t))/dt{sup m} + (fx)(t)=h(t), t element of R in the space of functions bounded on the axes are obtained by using local linear approximation to the operator F. Bibliography: 21 items.

  11. A Bayesian Approach for Nonlinear Structural Equation Models with Dichotomous Variables Using Logit and Probit Links

    ERIC Educational Resources Information Center

    Lee, Sik-Yum; Song, Xin-Yuan; Cai, Jing-Heng

    2010-01-01

    Analysis of ordered binary and unordered binary data has received considerable attention in social and psychological research. This article introduces a Bayesian approach, which has several nice features in practical applications, for analyzing nonlinear structural equation models with dichotomous data. We demonstrate how to use the software…

  12. Bayesian Analysis of Nonlinear Structural Equation Models with Nonignorable Missing Data

    ERIC Educational Resources Information Center

    Lee, Sik-Yum

    2006-01-01

    A Bayesian approach is developed for analyzing nonlinear structural equation models with nonignorable missing data. The nonignorable missingness mechanism is specified by a logistic regression model. A hybrid algorithm that combines the Gibbs sampler and the Metropolis-Hastings algorithm is used to produce the joint Bayesian estimates of…

  13. Generalized mean-field or master equation for nonlinear cavities with transverse effects

    SciTech Connect

    Dunlop, A.M.; Firth, W.J.; Heatley, D.R.; Wright, E.

    1996-06-01

    We present a general form of master equation for nonlinear-optical cavities that can be described by an {ital ABCD}matrix. It includes as special cases some previous models of spatiotemporal effects in lasers. {copyright} {ital 1996 Optical Society of America.}

  14. Periodic boundary value problems for nonlinear impulsive evolution equations on Banach spaces

    NASA Astrophysics Data System (ADS)

    Yu, Xiulan; Wang, JinRong

    2015-05-01

    In this paper, we consider periodic boundary value problems for two new type nonlinear impulsive evolution equations on Banach spaces. By using the theory of semigroup, a mixed type Gronwall inequality and fixed point methods, we establish several sufficient conditions on the existence of mild solutions for such problems. Finally, examples are given to illustrate our main results.

  15. On Insensitivity of the Chi-Square Model Test to Nonlinear Misspecification in Structural Equation Models

    ERIC Educational Resources Information Center

    Mooijaart, Ab; Satorra, Albert

    2009-01-01

    In this paper, we show that for some structural equation models (SEM), the classical chi-square goodness-of-fit test is unable to detect the presence of nonlinear terms in the model. As an example, we consider a regression model with latent variables and interactions terms. Not only the model test has zero power against that type of…

  16. Bounds on the Fourier coefficients for the periodic solutions of non-linear oscillator equations

    NASA Technical Reports Server (NTRS)

    Mickens, R. E.

    1988-01-01

    The differential equations describing nonlinear oscillations (as seen in mechanical vibrations, electronic oscillators, chemical and biochemical reactions, acoustic systems, stellar pulsations, etc.) are investigated analytically. The boundedness of the Fourier coefficients for periodic solutions is demonstrated for two special cases, and the extrapolation of the results to higher-dimensionsal systems is briefly considered.

  17. Stabilization of high-order solutions of the cubic nonlinear Schroedinger equation

    SciTech Connect

    Alexandrescu, Adrian; Montesinos, Gaspar D.; Perez-Garcia, Victor M.

    2007-04-15

    In this paper we consider the stabilization of nonfundamental unstable stationary solutions of the cubic nonlinear Schroedinger equation. Specifically, we study the stabilization of radially symmetric solutions with nodes and asymmetric complex stationary solutions. For the first ones, we find partial stabilization similar to that recently found for vortex solutions while for the later ones stabilization does not seem possible.

  18. Tensor-GMRES method for large sparse systems of nonlinear equations

    NASA Technical Reports Server (NTRS)

    Feng, Dan; Pulliam, Thomas H.

    1994-01-01

    This paper introduces a tensor-Krylov method, the tensor-GMRES method, for large sparse systems of nonlinear equations. This method is a coupling of tensor model formation and solution techniques for nonlinear equations with Krylov subspace projection techniques for unsymmetric systems of linear equations. Traditional tensor methods for nonlinear equations are based on a quadratic model of the nonlinear function, a standard linear model augmented by a simple second order term. These methods are shown to be significantly more efficient than standard methods both on nonsingular problems and on problems where the Jacobian matrix at the solution is singular. A major disadvantage of the traditional tensor methods is that the solution of the tensor model requires the factorization of the Jacobian matrix, which may not be suitable for problems where the Jacobian matrix is large and has a 'bad' sparsity structure for an efficient factorization. We overcome this difficulty by forming and solving the tensor model using an extension of a Newton-GMRES scheme. Like traditional tensor methods, we show that the new tensor method has significant computational advantages over the analogous Newton counterpart. Consistent with Krylov subspace based methods, the new tensor method does not depend on the factorization of the Jacobian matrix. As a matter of fact, the Jacobian matrix is never needed explicitly.

  19. An approximation theory for nonlinear partial differential equations with applications to identification and control

    NASA Technical Reports Server (NTRS)

    Banks, H. T.; Kunisch, K.

    1982-01-01

    Approximation results from linear semigroup theory are used to develop a general framework for convergence of approximation schemes in parameter estimation and optimal control problems for nonlinear partial differential equations. These ideas are used to establish theoretical convergence results for parameter identification using modal (eigenfunction) approximation techniques. Results from numerical investigations of these schemes for both hyperbolic and parabolic systems are given.

  20. A quadrature based method of moments for nonlinear Fokker-Planck equations

    NASA Astrophysics Data System (ADS)

    Otten, Dustin L.; Vedula, Prakash

    2011-09-01

    Fokker-Planck equations which are nonlinear with respect to their probability densities and occur in many nonequilibrium systems relevant to mean field interaction models, plasmas, fermions and bosons can be challenging to solve numerically. To address some underlying challenges, we propose the application of the direct quadrature based method of moments (DQMOM) for efficient and accurate determination of transient (and stationary) solutions of nonlinear Fokker-Planck equations (NLFPEs). In DQMOM, probability density (or other distribution) functions are represented using a finite collection of Dirac delta functions, characterized by quadrature weights and locations (or abscissas) that are determined based on constraints due to evolution of generalized moments. Three particular examples of nonlinear Fokker-Planck equations considered in this paper include descriptions of: (i) the Shimizu-Yamada model, (ii) the Desai-Zwanzig model (both of which have been developed as models of muscular contraction) and (iii) fermions and bosons. Results based on DQMOM, for the transient and stationary solutions of the nonlinear Fokker-Planck equations, have been found to be in good agreement with other available analytical and numerical approaches. It is also shown that approximate reconstruction of the underlying probability density function from moments obtained from DQMOM can be satisfactorily achieved using a maximum entropy method.

  1. Stochastic nonlinear wave equation with memory driven by compensated Poisson random measures

    SciTech Connect

    Liang, Fei; Department of Mathematics, Xi An University of Science and Technology, Xi An 710054 ; Gao, Hongjun

    2014-03-15

    In this paper, we study a class of stochastic nonlinear wave equation with memory driven by Lévy noise. We first show the existence and uniqueness of global mild solutions using a suitable energy function. Second, under some additional assumptions we prove the exponential stability of the solutions.

  2. New solutions of the Zakharov's equation system for quantum plasmas in form of nonlinear bursts lattice

    SciTech Connect

    Dubinov, Alexander E.; Kitayev, Ilya N.

    2014-02-15

    New multiplicative solutions of the Zakharov's quantum system of equations using the separation of variables method are found. The found solutions are interpreted as spatial-periodical lattices of non-linear plasma bursts. It is shown that the bursts could be both symmetrical and asymmetrical by an electric field.

  3. Generalization of the relaxation method for the inverse solution of nonlinear and linear transfer equations

    NASA Technical Reports Server (NTRS)

    Chahine, M. T.

    1977-01-01

    A mapping transformation is derived for the inverse solution of nonlinear and linear integral equations of the types encountered in remote sounding studies. The method is applied to the solution of specific problems for the determination of the thermal and composition structure of planetary atmospheres from a knowledge of their upwelling radiance.

  4. Nonrelativistic limit of standing waves for pseudo-relativistic nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Choi, Woocheol; Seok, Jinmyoung

    2016-02-01

    In this paper, we study standing waves for pseudo-relativistic nonlinear Schrödinger equations. In the first part, we find ground state solutions. We also prove that they have one sign and are radially symmetric. The second part is devoted to take nonrelativistic limit of the ground state solutions in H1(ℝn) space.

  5. Impulsive two-point boundary value problems for nonlinear qk-difference equations

    NASA Astrophysics Data System (ADS)

    Mardanov, Misir J.; Sharifov, Yagub A.

    2016-08-01

    In this study, impulsive two-point boundary value problems for nonlinear qk -difference equations is considered. Note that this problem contains the similar problem with antiperiodic boundary conditions as a partial case. The theorems on existence and uniqueness of the solution of the considered problem are proved. Obtained here results not only enlarges the class of considered boundary problems and also strengthens them.

  6. An approach to accelerate iterative methods for solving nonlinear operator equations

    NASA Astrophysics Data System (ADS)

    Nedzhibov, Gyurhan H.

    2011-12-01

    We propose and analyze a generalization of a Steffensen type acceleration method in case of extracting a locally unique solution of a nonlinear operator equation on a Banach space. In order, we use a special choice of a divided difference for operators. Convergence analysis and some applications of the obtained results are provided.

  7. Collapse, decay, and single-|k| turbulence from a generalized nonlinear Schrödinger equation.

    PubMed

    Cui, Shaoyan; Yu, M Y; Zhao, Dian

    2013-05-01

    Turbulence governed by a generalized nonlinear Schrödinger equation (GNSE) including viscous heating and nonlinear damping is numerically investigated. It is found that a large localized pulse can suffer modulational instability and then collapse into the shortest-wavelength modes, as for the classical nonlinear Schrödinger equation. However, the total energy of the nonconservative GNSE can also become constant during the collapse via local balance of energy gain and loss in the phase space. After the collapse, instead of inverse cascading into a state of strong turbulence with broad spectrum, a single-step cascade, or condensation, into modes of one predominant wavelength can occur. In fact, after attaining total energy balance the turbulent system as a whole evolves like a closed adiabatic system. PMID:23767640

  8. Study of Bunch Instabilities By the Nonlinear Vlasov-Fokker-Planck Equation

    SciTech Connect

    Warnock, Robert L.; /SLAC

    2006-07-11

    Instabilities of the bunch form in storage rings may be induced through the wake field arising from corrugations in the vacuum chamber, or from the wake and precursor fields due to coherent synchrotron radiation (CSR). For over forty years the linearized Vlasov equation has been applied to calculate the threshold in current for an instability, and the initial growth rate. Increasing interest in nonlinear aspects of the motion has led to numerical solutions of the nonlinear Vlasov equation, augmented with Fokker-Planck terms to describe incoherent synchrotron radiation in the case of electron storage rings. This opens the door to much deeper studies of coherent instabilities, revealing a rich variety of nonlinear phenomena. Recent work on this topic by the author and collaborators is reviewed.

  9. On the ill/well-posedness and nonlinear instability of the magneto-geostrophic equations

    NASA Astrophysics Data System (ADS)

    Friedlander, Susan; Vicol, Vlad

    2011-11-01

    We consider an active scalar equation that is motivated by a model for magneto-geostrophic dynamics and the geodynamo. We prove that the non-diffusive equation is ill-posed in the sense of Hadamard in Sobolev spaces. In contrast, the critically diffusive equation is globally well-posed (cf Friedlander and Vicol (2011 Ann. Inst. Henri Poincaré Anal. Non Linéaire 28 283-301)). In this case we give an example of a steady state that is nonlinearly unstable, and hence produces a dynamo effect in the sense of an exponentially growing magnetic field.

  10. A family of solution algorithms for nonlinear structural analysis based on relaxation equations

    NASA Technical Reports Server (NTRS)

    Park, K. C.

    1981-01-01

    A family of hierarchical algorithms for nonlinear structural equations are presented. The algorithms are based on the Davidenko-Branin type homotopy and shown to yield consistent hierarchical perturbation equations. The algorithms appear to be particularly suitable to problems involving bifurcation and limit point calculations. An important by-product of the algorithms is that it provides a systematic and economical means for computing the stepsize at each iteration stage when a Newton-like method is employed to solve the systems of equations. Some sample problems are provided to illustrate the characteristics of the algorithms.

  11. A procedure on the first integrals of second-order nonlinear ordinary differential equations

    NASA Astrophysics Data System (ADS)

    Yasar, Emrullah; Yıldırım, Yakup

    2015-12-01

    In this article, we demonstrate the applicability of the integrating factor method to path equation describing minimum drag work, and a special Hamiltonian equation corresponding Riemann zeros for obtaining the first integrals. The effectiveness and powerfullness of this method is verified by applying it for two selected second-order nonlinear ordinary differential equations (NLODEs). As a result integrating factors and first integrals for them are succesfully established. The obtained results show that the integrating factor approach can also be applied to other NLODEs.

  12. Symmetries of the TDNLS equations for weakly nonlinear dispersive MHD waves

    NASA Technical Reports Server (NTRS)

    Webb, G. M.; Brio, M.; Zank, G. P.

    1995-01-01

    In this paper we consider the symmetries and conservation laws for the TDNLS equations derived by Hada (1993) and Brio, Hunter and Johnson, to describe the propagation of weakly nonlinear dispersive MHD waves in beta approximately 1 plasmas. The equations describe the interaction of the Alfven and magnetoacoustic modes near the triple umbilic, where the fast magnetosonic, slow magnetosonic and Alfven speeds coincide and a(g)(exp 2) = V(A)(exp 2) where a(g) is the gas sound speed and V(A) is the Alfven speed. We discuss Lagrangian and Hamiltonian formulations, and similarity solutions for the equations.

  13. Boussinesq equations and other systems for small-amplitude long waves in nonlinear dispersive media: II. The nonlinear theory

    NASA Astrophysics Data System (ADS)

    Bona, J. L.; Chen, M.; Saut, J.-C.

    2004-05-01

    In part I of this work (Bona J L, Chen M and Saut J-C 2002 Boussinesq equations and other systems for small-amplitude long waves in nonlinear dispersive media I: Derivation and the linear theory J. Nonlinear Sci. 12 283-318), a four-parameter family of Boussinesq systems was derived to describe the propagation of surface water waves. Similar systems are expected to arise in other physical settings where the dominant aspects of propagation are a balance between the nonlinear effects of convection and the linear effects of frequency dispersion. In addition to deriving these systems, we determined in part I exactly which of them are linearly well posed in various natural function classes. It was argued that linear well-posedness is a natural necessary requirement for the possible physical relevance of the model in question. In this paper, it is shown that the first-order correct models that are linearly well posed are in fact locally nonlinearly well posed. Moreover, in certain specific cases, global well-posedness is established for physically relevant initial data. In part I, higher-order correct models were also derived. A preliminary analysis of a promising subclass of these models shows them to be well posed.

  14. Alpha models for rotating Navier-Stokes equations in geophysics with nonlinear dispersive regularization

    NASA Astrophysics Data System (ADS)

    Kim, Bong-Sik

    Three dimensional (3D) Navier-Stokes-alpha equations are considered for uniformly rotating geophysical fluid flows (large Coriolis parameter f = 2O). The Navier-Stokes-alpha equations are a nonlinear dispersive regularization of usual Navier-Stokes equations obtained by Lagrangian averaging. The focus is on the existence and global regularity of solutions of the 3D rotating Navier-Stokes-alpha equations and the uniform convergence of these solutions to those of the original 3D rotating Navier-Stokes equations for large Coriolis parameters f as alpha → 0. Methods are based on fast singular oscillating limits and results are obtained for periodic boundary conditions for all domain aspect ratios, including the case of three wave resonances which yields nonlinear "2½-dimensional" limit resonant equations for f → 0. The existence and global regularity of solutions of limit resonant equations is established, uniformly in alpha. Bootstrapping from global regularity of the limit equations, the existence of a regular solution of the full 3D rotating Navier-Stokes-alpha equations for large f for an infinite time is established. Then, the uniform convergence of a regular solution of the 3D rotating Navier-Stokes-alpha equations (alpha ≠ 0) to the one of the original 3D rotating NavierStokes equations (alpha = 0) for f large but fixed as alpha → 0 follows; this implies "shadowing" of trajectories of the limit dynamical systems by those of the perturbed alpha-dynamical systems. All the estimates are uniform in alpha, in contrast with previous estimates in the literature which blow up as alpha → 0. Finally, the existence of global attractors as well as exponential attractors is established for large f and the estimates are uniform in alpha.

  15. Rogue waves for a system of coupled derivative nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Chan, H. N.; Malomed, B. A.; Chow, K. W.; Ding, E.

    2016-01-01

    Rogue waves (RWs) are unexpectedly strong excitations emerging from an otherwise tranquil background. The nonlinear Schrödinger equation (NLSE), a ubiquitous model with wide applications to fluid mechanics, optics, plasmas, etc., exhibits RWs only in the regime of modulation instability (MI) of the background. For a system of multiple waveguides, the governing coupled NLSEs can produce regimes of MI and RWs, even if each component has dispersion and cubic nonlinearity of opposite signs. A similar effect is demonstrated here for a system of coupled derivative NLSEs (DNLSEs) where the special feature is the nonlinear self-steepening of narrow pulses. More precisely, these additional regimes of MI and RWs for coupled DNLSEs depend on the mismatch in group velocities between the components, and the parameters for cubic nonlinearity and self-steepening. RWs considered in this paper differ from those of the NLSEs in terms of the amplification ratio and criteria of existence. Applications to optics and plasma physics are discussed.

  16. Nonlinear vibration of functionally graded circular cylindrical shells based on improved Donnell equations

    NASA Astrophysics Data System (ADS)

    Bich, Dao Huy; Xuan Nguyen, Nguyen

    2012-12-01

    In the present work, the study of the nonlinear vibration of a functionally graded cylindrical shell subjected to axial and transverse mechanical loads is presented. Material properties are graded in the thickness direction of the shell according to a simple power law distribution in terms of volume fractions of the material constituents. Governing equations are derived using improved Donnell shell theory ignoring the shallowness of cylindrical shells and kinematic nonlinearity is taken into consideration. One-term approximate solution is assumed to satisfy simply supported boundary conditions. The Galerkin method, the Volmir's assumption and fourth-order Runge-Kutta method are used for dynamical analysis of shells to give explicit expressions of natural frequencies, nonlinear frequency-amplitude relation and nonlinear dynamic responses. Numerical results show the effects of characteristics of functionally graded materials, pre-loaded axial compression and dimensional ratios on the dynamical behavior of shells. The proposed results are validated by comparing with those in the literature.

  17. Evidence for self-refraction in a convergence zone: NPE (Nonlinear progressive wave equation) model results

    NASA Technical Reports Server (NTRS)

    Mcdonald, B. Edward; Plante, Daniel R.

    1989-01-01

    The nonlinear progressive wave equation (NPE) model was developed by the Naval Ocean Research and Development Activity during 1982 to 1987 to study nonlinear effects in long range oceanic propagation of finite amplitude acoustic waves, including weak shocks. The NPE model was applied to propagation of a generic shock wave (initial condition provided by Sandia Division 1533) in a few illustrative environments. The following consequences of nonlinearity are seen by comparing linear and nonlinear NPE results: (1) a decrease in shock strength versus range (a well-known result of entropy increases at the shock front); (2) an increase in the convergence zone range; and (3) a vertical meandering of the energy path about the corresponding linear ray path. Items (2) and (3) are manifestations of self-refraction.

  18. The nonlinear equation of state of sea water and the global water mass distribution

    NASA Astrophysics Data System (ADS)

    Nycander, Jonas; Hieronymus, Magnus; Roquet, Fabien

    2015-09-01

    The role of nonlinearities of the equation of state (EOS) of seawater for the distribution of water masses in the global ocean is examined through simulations with an ocean general circulation model with various manipulated versions of the EOS. A simulation with a strongly simplified EOS, which contains only two nonlinear terms, still produces a realistic water mass distribution, demonstrating that these two nonlinearities are indeed the essential ones. Further simulations show that each of these two nonlinear terms affects a specific aspect of the water mass distribution: the cabbeling term is crucial for the formation of Antarctic Intermediate Water and the thermobaric term for the layering of North Atlantic Deep Water and Antarctic Bottom Water.

  19. Nonlinear Riccati equations as a unifying link between linear quantum mechanics and other fields of physics

    NASA Astrophysics Data System (ADS)

    Schuch, Dieter

    2014-04-01

    Theoretical physics seems to be in a kind of schizophrenic state. Many phenomena in the observable macroscopic world obey nonlinear evolution equations, whereas the microscopic world is governed by quantum mechanics, a fundamental theory that is supposedly linear. In order to combine these two worlds in a common formalism, at least one of them must sacrifice one of its dogmas. I claim that linearity in quantum mechanics is not as essential as it apparently seems since quantum mechanics can be reformulated in terms of nonlinear Riccati equations. In a first step, it will be shown where complex Riccati equations appear in time-dependent quantum mechanics and how they can be treated and compared with similar space-dependent Riccati equations in supersymmetric quantum mechanics. Furthermore, the time-independent Schrödinger equation can also be rewritten as a complex Riccati equation. Finally, it will be shown that (real and complex) Riccati equations also appear in many other fields of physics, like statistical thermodynamics and cosmology.

  20. AKNS hierarchy, Darboux transformation and conservation laws of the 1D nonautonomous nonlinear Schroedinger equations

    SciTech Connect

    Zhao Dun; Zhang Yujuan; Lou Weiwei; Luo Honggang

    2011-04-15

    By constructing nonisospectral Ablowitz-Kaup-Newell-Segur (AKNS) hierarchy, we investigate the nonautonomous nonlinear Schroedinger (NLS) equations which have been used to describe the Feshbach resonance management in matter-wave solitons in Bose-Einstein condensate and the dispersion and nonlinearity managements for optical solitons. It is found that these equations are some special cases of a new integrable model of nonlocal nonautonomous NLS equations. Based on the Lax pairs, the Darboux transformation and conservation laws are explored. It is shown that the local external potentials would break down the classical infinite number of conservation laws. The result indicates that the integrability of the nonautonomous NLS systems may be nontrivial in comparison to the conventional concept of integrability in the canonical case.

  1. Nonlinear diffusion-wave equation for a gas in a regenerator subject to temperature gradient

    NASA Astrophysics Data System (ADS)

    Sugimoto, N.

    2015-10-01

    This paper derives an approximate equation for propagation of nonlinear thermoacoustic waves in a gas-filled, circular pore subject to temperature gradient. The pore radius is assumed to be much smaller than a thickness of thermoviscous diffusion layer, and the narrow-tube approximation is used in the sense that a typical axial length associated with temperature gradient is much longer than the radius. Introducing three small parameters, one being the ratio of the pore radius to the thickness of thermoviscous diffusion layer, another the ratio of a typical speed of thermoacoustic waves to an adiabatic sound speed and the other the ratio of a typical magnitude of pressure disturbance to a uniform pressure in a quiescent state, a system of fluid dynamical equations for an ideal gas is reduced asymptotically to a nonlinear diffusion-wave equation by using boundary conditions on a pore wall. Discussion on a temporal mean of an excess pressure due to periodic oscillations is included.

  2. Nonlinear Aeroelastic Equations of Motion of Twisted, Nonuniform, Flexible Horizontal-Axis Wind Turbine Blades

    NASA Technical Reports Server (NTRS)

    Kaza, K. R. V.

    1980-01-01

    The second-degree nonlinear equations of motion for a flexible, twisted, nonuniform, horizontal axis wind turbine blade were developed using Hamilton's principle. A mathematical ordering scheme which was consistent with the assumption of a slender beam was used to discard some higher-order elastic and inertial terms in the second-degree nonlinear equations. The blade aerodynamic loading which was employed accounted for both wind shear and tower shadow and was obtained from strip theory based on a quasi-steady approximation of two-dimensional, incompressible, unsteady, airfoil theory. The resulting equations had periodic coefficients and were suitable for determining the aeroelastic stability and response of large horizontal-axis wind turbine blades.

  3. On the compatibility equations of nonlinear and linear elasticity in the presence of boundary conditions

    NASA Astrophysics Data System (ADS)

    Angoshtari, Arzhang; Yavari, Arash

    2015-12-01

    We use Hodge-type orthogonal decompositions for studying the compatibility equations of the displacement gradient and the linear strain with prescribed boundary displacements. We show that the displacement gradient is compatible if and only if for any equilibrated virtual first Piola-Kirchhoff stress tensor field, the virtual work done by the displacement gradient is equal to the virtual work done by the prescribed boundary displacements. This condition is very similar to the classical compatibility equations for the linear strain. Since these compatibility equations for linear and nonlinear strains involve infinite-dimensional spaces and consequently are not easy to use in practice, we derive alternative compatibility equations, which are written in terms of some finite-dimensional spaces and are more useful in practice. Using these new compatibility equations, we present some non-trivial examples that show that compatible strains may become incompatible in the presence of prescribed boundary displacements.

  4. The new integrable symplectic map and the symmetry of integrable nonlinear lattice equation

    NASA Astrophysics Data System (ADS)

    Dong, Huanhe; Zhang, Yong; Zhang, Xiaoen

    2016-07-01

    A discrete matrix spectral problem is presented and the hierarchy of discrete integrable systems is derived. Their Hamiltonian structures are established. As to the discrete integrable system, nonlinearization of the spatial parts of the Lax pairs and the adjoint Lax pairs generate a new integrable symplectic map. Based on the theory, a new integrable symplectic map and a family of finite-dimension completely integrable systems are given. Especially, two explicit equations are obtained under the Bargmann constraint. Finally, the symmetry of the discrete equation is provided according to the recursion operator and the seed symmetry. Although the solutions of the discrete equations have been gained by many methods, there are few articles that solving the discrete equation via the symmetry. So the solution of the discrete lattice equation is obtained through the symmetry theory.

  5. Asymptotics for inhomogeneous Dirichlet initial-boundary value problem for the nonlinear Schrödinger equation

    SciTech Connect

    Kaikina, Elena I.

    2013-11-15

    We consider the inhomogeneous Dirichlet initial-boundary value problem for the nonlinear Schrödinger equation, formulated on a half-line. We study traditionally important problems of the theory of nonlinear partial differential equations, such as global in time existence of solutions to the initial-boundary value problem and the asymptotic behavior of solutions for large time.

  6. New Rational Homoclinic Solution and Rogue Wave Solution for the Coupled Nonlinear Schrödinger Equation

    NASA Astrophysics Data System (ADS)

    Li, Long-Xing; Liu, Jun; Dai, Zheng-De; Liu, Ren-Lang

    2014-09-01

    In this work, the rational homoclinic solution (rogue wave solution) can be obtained via the classical homoclinic solution for the nonlinear Schrödinger (NLS) equation and the coupled nonlinear Schrödinger (CNLS) equation, respectively. This is a new way for generating rogue wave comparing with direct constructing method and Darboux dressing technique

  7. Nonlinear Dynamics of Layered Structures and the Generalized Sine-Lattice Equations

    NASA Astrophysics Data System (ADS)

    Soboleva, Tatyana; Zeltser, Alexander; Kivshar, Yuri; Turitsyn, Sergei

    1995-07-01

    We analyze nonlinear waves in layered (anisotropic) structures with strong interlayer interaction. One of the important physical examples of nonlinear modes in such structures is the so-called supersolitons, localized excitations of the density of a vortex lattice propagating in a system of interacting (parallel) long Josephson junctions. We show that the dynamics of these structures may be described by the so-called sine-lattice (SL) equation first introduced by S. Takeno and S. Homma [J. Phys. Soc. Jpn. 55 (1986) 65] and its various generalizations, e.g. those which include a transverse degree of freedom or more general types of the interlayer (nonlinear) interactions described by periodic Jacobi elliptic functions. We analyze nonlinear localized waves in such generalized SL equations analytically and numerically, and show that, in general, density waves may be of three types, namely kinks, dynamical solitons, and envelope solitons. We investigate also the transverse stability of quasi-one-dimensional solitons in the framework of the effective modified Boussinesq equation valid for both small amplitudes and continuous approximation, as well as investigate numerically the effects of perturbations (dissipation or point-like impurities) on the dynamics of π -kinks.

  8. Oscillation criteria for second order forced ordinary differential equations with mixed nonlinearities

    NASA Astrophysics Data System (ADS)

    Sun, Yuan Gong; Wong, James S. W.

    2007-10-01

    We present new oscillation criteria for the second order forced ordinary differential equation with mixed nonlinearities: where , p(t) is positive and differentiable, [alpha]1>...>[alpha]m>1>[alpha]m+1>...>[alpha]n. No restriction is imposed on the forcing term e(t) to be the second derivative of an oscillatory function. When n=1, our results reduce to those of El-Sayed [M.A. El-Sayed, An oscillation criterion for a forced second order linear differential equation, Proc. Amer. Math. Soc. 118 (1993) 813-817], Wong [J.S.W. Wong, Oscillation criteria for a forced second linear differential equations, J. Math. Anal. Appl. 231 (1999) 235-240], Sun, Ou and Wong [Y.G. Sun, C.H. Ou, J.S.W. Wong, Interval oscillation theorems for a linear second order differential equation, Comput. Math. Appl. 48 (2004) 1693-1699] for the linear equation, Nazr [A.H. Nazr, Sufficient conditions for the oscillation of forced super-linear second order differential equations with oscillatory potential, Proc. Amer. Math. Soc. 126 (1998) 123-125] for the superlinear equation, and Sun and Wong [Y.G. Sun, J.S.W. Wong, Note on forced oscillation of nth-order sublinear differential equations, JE Math. Anal. Appl. 298 (2004) 114-119] for the sublinear equation.

  9. Lie symmetry properties of nonlinear reaction-diffusion equations with gradient-dependent diffusivity

    NASA Astrophysics Data System (ADS)

    Cherniha, Roman; King, John R.; Kovalenko, Sergii

    2016-07-01

    Complete descriptions of the Lie symmetries of a class of nonlinear reaction-diffusion equations with gradient-dependent diffusivity in one and two space dimensions are obtained. A surprisingly rich set of Lie symmetry algebras depending on the form of diffusivity and source (sink) in the equations is derived. It is established that there exists a subclass in 1-D space admitting an infinite-dimensional Lie algebra of invariance so that it is linearisable. A special power-law diffusivity with a fixed exponent, which leads to wider Lie invariance of the equations in question in 2-D space, is also derived. However, it is shown that the diffusion equation without a source term (which often arises in applications and is sometimes called the Perona-Malik equation) possesses no rich variety of Lie symmetries depending on the form of gradient-dependent diffusivity. The results of the Lie symmetry classification for the reduction to lower dimensionality, and a search for exact solutions of the nonlinear 2-D equation with power-law diffusivity, also are included.

  10. Heteroclinic Structure of Parametric Resonance in the Nonlinear Schrödinger Equation

    NASA Astrophysics Data System (ADS)

    Conforti, M.; Mussot, A.; Kudlinski, A.; Rota Nodari, S.; Dujardin, G.; De Biévre, S.; Armaroli, A.; Trillo, S.

    2016-07-01

    We show that the nonlinear stage of modulational instability induced by parametric driving in the defocusing nonlinear Schrödinger equation can be accurately described by combining mode truncation and averaging methods, valid in the strong driving regime. The resulting integrable oscillator reveals a complex hidden heteroclinic structure of the instability. A remarkable consequence, validated by the numerical integration of the original model, is the existence of breather solutions separating different Fermi-Pasta-Ulam recurrent regimes. Our theory also shows that optimal parametric amplification unexpectedly occurs outside the bandwidth of the resonance (or Arnold tongues) arising from the linearized Floquet analysis.

  11. Constrained hierarchical least square nonlinear equation solvers. [for indefinite stiffness and large structural deformations

    NASA Technical Reports Server (NTRS)

    Padovan, J.; Lackney, J.

    1986-01-01

    The current paper develops a constrained hierarchical least square nonlinear equation solver. The procedure can handle the response behavior of systems which possess indefinite tangent stiffness characteristics. Due to the generality of the scheme, this can be achieved at various hierarchical application levels. For instance, in the case of finite element simulations, various combinations of either degree of freedom, nodal, elemental, substructural, and global level iterations are possible. Overall, this enables a solution methodology which is highly stable and storage efficient. To demonstrate the capability of the constrained hierarchical least square methodology, benchmarking examples are presented which treat structure exhibiting highly nonlinear pre- and postbuckling behavior wherein several indefinite stiffness transitions occur.

  12. Modulational instability of a modified Gross-Pitaevskii equation with higher-order nonlinearity.

    PubMed

    Qi, Xiu-Ying; Xue, Ju-Kui

    2012-07-01

    We consider the modulational instability (MI) of Bose-Einstein condensate (BEC) described by a modified Gross-Pitaevskii (GP) equation with higher-order nonlinearity both analytically and numerically. A new explicit time-dependent criterion for exciting the MI is obtained. It is shown that the higher-order term can either suppress or enhance the MI, which is interesting for control of the system instability. Importantly, we predict that with the help of the higher-order nonlinearity, the MI can also take place in a BEC with repulsively contact interactions. The analytical results are confirmed by direct numerical simulations. PMID:23005569

  13. Power-series expansion of the Boltzmann equation and reciprocal relations for nonlinear irreversible phenomena

    NASA Astrophysics Data System (ADS)

    Sharipov, Felix

    2011-12-01

    The Boltzmann equation subject to a general boundary condition is expanded in a power series with respect to a thermodynamic force disturbing a gaseous system. Recurrence relations between the terms of the expansion are obtained using the main properties of the collision integral and of the gas-surface interaction kernel. The reciprocal relation for nonlinear irreversible phenomena, i.e., a relation between the terms of different orders, is obtained. The relations can be used to estimate the range of applicability of linearized solutions and to predict nonlinear phenomena in gaseous systems.

  14. High-order rogue waves in vector nonlinear Schrödinger equations.

    PubMed

    Ling, Liming; Guo, Boling; Zhao, Li-Chen

    2014-04-01

    We study the dynamics of high-order rogue waves (RWs) in two-component coupled nonlinear Schrödinger equations. We find that four fundamental rogue waves can emerge from second-order vector RWs in the coupled system, in contrast to the high-order ones in single-component systems. The distribution shape can be quadrilateral, triangle, and line structures by varying the proper initial excitations given by the exact analytical solutions. The distribution pattern for vector RWs is more abundant than that for scalar rogue waves. Possibilities to observe these new patterns for rogue waves are discussed for a nonlinear fiber. PMID:24827185

  15. A nonlinear time-lag differential equation model for predicting monthly precipitation

    NASA Astrophysics Data System (ADS)

    Peng, Yongqing; Yan, Shaojin; Wang, Tongmei

    1995-08-01

    This paper investigates the nonlinear prediction of monthly rainfall time series which consists of phase space continuation of one-dimensional sequence, followed by least-square determination of the coefficients for the terms of the time-lag differential equation model and then fitting of the prognostic expression is made to 1951 1980 monthly rainfall datasets from Changsha station. Results show that the model is likely to describe the nonlinearity of the annual cycle of precipitation on a monthly basis and to provide a basis for flood prevention and drought combating for the wet season.

  16. A new nonlinear finite volume scheme preserving positivity for diffusion equations

    NASA Astrophysics Data System (ADS)

    Sheng, Zhiqiang; Yuan, Guangwei

    2016-06-01

    In this paper we present a new nonlinear finite volume scheme preserving positivity for diffusion equations. The main feature of the scheme is the assumption that the values of auxiliary unknowns are nonnegative is avoided. Two nonnegative parameters are introduced to define a new nonlinear two-point flux, in which one point is the cell-center and the other is the midpoint of cell-edge. The final flux on the edge is obtained by the continuity of normal flux. Numerical results show that the accuracy of both solution and flux for our new scheme is superior to that of some existing monotone schemes.

  17. Dynamics of excited instantons in the system of forced Gursey nonlinear differential equations

    NASA Astrophysics Data System (ADS)

    Aydogmus, F.

    2015-02-01

    The Gursey model is a 4D conformally invariant pure fermionic model with a nonlinear spinor self-coupled term. Gursey proposed his model as a possible basis for a unitary description of elementary particles following the "Heisenberg dream." In this paper, we consider the system of Gursey nonlinear differential equations (GNDEs) formed by using the Heisenberg ansatz. We use it to understand how the behavior of spinor-type Gursey instantons can be affected by excitations. For this, the regular and chaotic numerical solutions of forced GNDEs are investigated by constructing their Poincaré sections in phase space. A hierarchical cluster analysis method for investigating the forced GNDEs is also presented.

  18. Global Existence and Energy Decay Rates for a Kirchhoff-Type Wave Equation with Nonlinear Dissipation

    PubMed Central

    Kim, Dojin; Hong, Keum-Shik; Jung, Il Hyo

    2014-01-01

    The first objective of this paper is to prove the existence and uniqueness of global solutions for a Kirchhoff-type wave equation with nonlinear dissipation of the form Ku′′ + M(|A1/2u|2)Au + g(u′) = 0 under suitable assumptions on K, A, M(·), and g(·). Next, we derive decay estimates of the energy under some growth conditions on the nonlinear dissipation g. Lastly, numerical simulations in order to verify the analytical results are given. PMID:24977217

  19. A method for exponential propagation of large systems of stiff nonlinear differential equations

    NASA Technical Reports Server (NTRS)

    Friesner, Richard A.; Tuckerman, Laurette S.; Dornblaser, Bright C.; Russo, Thomas V.

    1989-01-01

    A new time integrator for large, stiff systems of linear and nonlinear coupled differential equations is described. For linear systems, the method consists of forming a small (5-15-term) Krylov space using the Jacobian of the system and carrying out exact exponential propagation within this space. Nonlinear corrections are incorporated via a convolution integral formalism; the integral is evaluated via approximate Krylov methods as well. Gains in efficiency ranging from factors of 2 to 30 are demonstrated for several test problems as compared to a forward Euler scheme and to the integration package LSODE.

  20. About simple nonlinear and linear superpositions of special exact solutions of Veselov-Novikov equation

    SciTech Connect

    Dubrovsky, V. G.; Topovsky, A. V.

    2013-03-15

    New exact solutions, nonstationary and stationary, of Veselov-Novikov (VN) equation in the forms of simple nonlinear and linear superpositions of arbitrary number N of exact special solutions u{sup (n)}, n= 1, Horizontal-Ellipsis , N are constructed via Zakharov and Manakov {partial_derivative}-dressing method. Simple nonlinear superpositions are represented up to a constant by the sums of solutions u{sup (n)} and calculated by {partial_derivative}-dressing on nonzero energy level of the first auxiliary linear problem, i.e., 2D stationary Schroedinger equation. It is remarkable that in the zero energy limit simple nonlinear superpositions convert to linear ones in the form of the sums of special solutions u{sup (n)}. It is shown that the sums u=u{sup (k{sub 1})}+...+u{sup (k{sub m})}, 1 Less-Than-Or-Slanted-Equal-To k{sub 1} < k{sub 2} < Horizontal-Ellipsis < k{sub m} Less-Than-Or-Slanted-Equal-To N of arbitrary subsets of these solutions are also exact solutions of VN equation. The presented exact solutions include as superpositions of special line solitons and also superpositions of plane wave type singular periodic solutions. By construction these exact solutions represent also new exact transparent potentials of 2D stationary Schroedinger equation and can serve as model potentials for electrons in planar structures of modern electronics.

  1. Fokker-Planck equation analysis of randomly excited nonlinear energy harvester

    NASA Astrophysics Data System (ADS)

    Kumar, P.; Narayanan, S.; Adhikari, S.; Friswell, M. I.

    2014-03-01

    The probability structure of the response and energy harvested from a nonlinear oscillator subjected to white noise excitation is investigated by solution of the corresponding Fokker-Planck (FP) equation. The nonlinear oscillator is the classical double well potential Duffing oscillator corresponding to the first mode vibration of a cantilever beam suspended between permanent magnets and with bonded piezoelectric patches for purposes of energy harvesting. The FP equation of the coupled electromechanical system of equations is derived. The finite element method is used to solve the FP equation giving the joint probability density functions of the response as well as the voltage generated from the piezoelectric patches. The FE method is also applied to the nonlinear inductive energy harvester of Daqaq and the results are compared. The mean square response and voltage are obtained for different white noise intensities. The effects of the system parameters on the mean square voltage are studied. It is observed that the energy harvested can be enhanced by suitable choice of the excitation intensity and the parameters. The results of the FP approach agree very well with Monte Carlo Simulation (MCS) results.

  2. About simple nonlinear and linear superpositions of special exact solutions of Veselov-Novikov equation

    NASA Astrophysics Data System (ADS)

    Dubrovsky, V. G.; Topovsky, A. V.

    2013-03-01

    New exact solutions, nonstationary and stationary, of Veselov-Novikov (VN) equation in the forms of simple nonlinear and linear superpositions of arbitrary number N of exact special solutions u(n), n = 1, …, N are constructed via Zakharov and Manakov overline{partial }-dressing method. Simple nonlinear superpositions are represented up to a constant by the sums of solutions u(n) and calculated by overline{partial }-dressing on nonzero energy level of the first auxiliary linear problem, i.e., 2D stationary Schrödinger equation. It is remarkable that in the zero energy limit simple nonlinear superpositions convert to linear ones in the form of the sums of special solutions u(n). It is shown that the sums u= u^{(k_1)}+ldots + u^{(k_m)}, 1 ⩽ k1 < k2 < … < km ⩽ N of arbitrary subsets of these solutions are also exact solutions of VN equation. The presented exact solutions include as superpositions of special line solitons and also superpositions of plane wave type singular periodic solutions. By construction these exact solutions represent also new exact transparent potentials of 2D stationary Schrödinger equation and can serve as model potentials for electrons in planar structures of modern electronics.

  3. Nonlinear quantum-mechanical system associated with Sine-Gordon equation in (1 + 2) dimensions

    SciTech Connect

    Zarmi, Yair

    2014-10-15

    Despite the fact that it is not integrable, the (1 + 2)-dimensional Sine-Gordon equation has N-soliton solutions, whose velocities are lower than the speed of light (c = 1), for all N ≥ 1. Based on these solutions, a quantum-mechanical system is constructed over a Fock space of particles. The coordinate of each particle is an angle around the unit circle. U, a nonlinear functional of the particle number-operators, which obeys the Sine-Gordon equation in (1 + 2) dimensions, is constructed. Its eigenvalues on N-particle states in the Fock space are the slower-than-light, N-soliton solutions of the equation. A projection operator (a nonlinear functional of U), which vanishes on the single-particle subspace, is a mass-density generator. Its eigenvalues on multi-particle states play the role of the mass density of structures that emulate free, spatially extended, relativistic particles. The simplicity of the quantum-mechanical system allows for the incorporation of perturbations with particle interactions, which have the capacity to “annihilate” and “create” solitons – an effect that does not have an analog in perturbed classical nonlinear evolution equations.

  4. Asymptotic integration algorithms for nonhomogeneous, nonlinear, first order, ordinary differential equations

    NASA Technical Reports Server (NTRS)

    Walker, K. P.; Freed, A. D.

    1991-01-01

    New methods for integrating systems of stiff, nonlinear, first order, ordinary differential equations are developed by casting the differential equations into integral form. Nonlinear recursive relations are obtained that allow the solution to a system of equations at time t plus delta t to be obtained in terms of the solution at time t in explicit and implicit forms. Examples of accuracy obtained with the new technique are given by considering systems of nonlinear, first order equations which arise in the study of unified models of viscoplastic behaviors, the spread of the AIDS virus, and predator-prey populations. In general, the new implicit algorithm is unconditionally stable, and has a Jacobian of smaller dimension than that which is acquired by current implicit methods, such as the Euler backward difference algorithm; yet, it gives superior accuracy. The asymptotic explicit and implicit algorithms are suitable for solutions that are of the growing and decaying exponential kinds, respectively, whilst the implicit Euler-Maclaurin algorithm is superior when the solution oscillates, i.e., when there are regions in which both growing and decaying exponential solutions exist.

  5. TENSOLVE: A software package for solving systems of nonlinear equations and nonlinear least squares problems using tensor methods

    SciTech Connect

    Bouaricha, A.; Schnabel, R.B.

    1996-12-31

    This paper describes a modular software package for solving systems of nonlinear equations and nonlinear least squares problems, using a new class of methods called tensor methods. It is intended for small to medium-sized problems, say with up to 100 equations and unknowns, in cases where it is reasonable to calculate the Jacobian matrix or approximate it by finite differences at each iteration. The software allows the user to select between a tensor method and a standard method based upon a linear model. The tensor method models F({ital x}) by a quadratic model, where the second-order term is chosen so that the model is hardly more expensive to form, store, or solve than the standard linear model. Moreover, the software provides two different global strategies, a line search and a two- dimensional trust region approach. Test results indicate that, in general, tensor methods are significantly more efficient and robust than standard methods on small and medium-sized problems in iterations and function evaluations.

  6. New extended (G'/G)-expansion method to solve nonlinear evolution equation: the (3 + 1)-dimensional potential-YTSF equation.

    PubMed

    Roshid, Harun-Or-; Akbar, M Ali; Alam, Md Nur; Hoque, Md Fazlul; Rahman, Nizhum

    2014-01-01

    In this article, a new extended (G'/G) -expansion method has been proposed for constructing more general exact traveling wave solutions of nonlinear evolution equations with the aid of symbolic computation. In order to illustrate the validity and effectiveness of the method, we pick the (3 + 1)-dimensional potential-YTSF equation. As a result, abundant new and more general exact solutions have been achieved of this equation. It has been shown that the proposed method provides a powerful mathematical tool for solving nonlinear wave equations in applied mathematics, engineering and mathematical physics. PMID:25674431

  7. Global Stability Analysis of Some Nonlinear Delay Differential Equations in Population Dynamics

    NASA Astrophysics Data System (ADS)

    Huang, Gang; Liu, Anping; Foryś, Urszula

    2016-02-01

    By using the direct Lyapunov method and constructing appropriate Lyapunov functionals, we investigate the global stability for the following scalar delay differential equation with nonlinear term y'(t)=f(1-y(t), y(t-τ ))-cy(t), where c is a positive constant and f: {R}^2 → R is of class C^1 and satisfies some additional requirements. This equation is a generalization of the SIS model proposed by Cooke (Rocky Mt J Math 7: 253-263, 1979). Criterions of global stability for the trivial and the positive equilibria of this delay equation are given. A special case of the function f depending only on the variable y(t-τ ) is also considered. Both general and special cases of this equation are often used in biomathematical modelling.

  8. Breather management in the derivative nonlinear Schrödinger equation with variable coefficients

    SciTech Connect

    Zhong, Wei-Ping; Belić, Milivoj; Malomed, Boris A.; Huang, Tingwen

    2015-04-15

    We investigate breather solutions of the generalized derivative nonlinear Schrödinger (DNLS) equation with variable coefficients, which is used in the description of femtosecond optical pulses in inhomogeneous media. The solutions are constructed by means of the similarity transformation, which reduces a particular form of the generalized DNLS equation into the standard one, with constant coefficients. Examples of bright and dark breathers of different orders, that ride on finite backgrounds and may be related to rogue waves, are presented. - Highlights: • Exact solutions of a generalized derivative NLS equation are obtained. • The solutions are produced by means of a transformation to the usual integrable equation. • The validity of the solutions is verified by comparing them to numerical counterparts. • Stability of the solutions is checked by means of direct simulations. • The model applies to the propagation of ultrashort pulses in optical media.

  9. Random Search Algorithm for Solving the Nonlinear Fredholm Integral Equations of the Second Kind

    PubMed Central

    Hong, Zhimin; Yan, Zaizai; Yan, Jiao

    2014-01-01

    In this paper, a randomized numerical approach is used to obtain approximate solutions for a class of nonlinear Fredholm integral equations of the second kind. The proposed approach contains two steps: at first, we define a discretized form of the integral equation by quadrature formula methods and solution of this discretized form converges to the exact solution of the integral equation by considering some conditions on the kernel of the integral equation. And then we convert the problem to an optimal control problem by introducing an artificial control function. Following that, in the next step, solution of the discretized form is approximated by a kind of Monte Carlo (MC) random search algorithm. Finally, some examples are given to show the efficiency of the proposed approach. PMID:25072373

  10. On splitting methods for Schroedinger-Poisson and cubic nonlinear Schroedinger equations

    NASA Astrophysics Data System (ADS)

    Lubich, Christian

    2008-12-01

    We give an error analysis of Strang-type splitting integrators for nonlinear Schroedinger equations. For Schroedinger-Poisson equations with an H^4 -regular solution, a first-order error bound in the H^1 norm is shown and used to derive a second-order error bound in the L_2 norm. For the cubic Schroedinger equation with an H^4 -regular solution, first-order convergence in the H^2 norm is used to obtain second-order convergence in the L_2 norm. Basic tools in the error analysis are Lie-commutator bounds for estimating the local error and H^m -conditional stability for error propagation, where mD1 for the Schroedinger-Poisson system and mD2 for the cubic Schroedinger equation.

  11. Analytical solutions of linear and nonlinear Klein-Fock-Gordon equation

    NASA Astrophysics Data System (ADS)

    Khan, Najeeb Alam; Rasheed, Sajida

    2015-03-01

    In this paper, we deal with some linear and nonlinear Klein-Fock-Gordon (KFG) equations, which is a relativistic version of the Schrödinger equation. The approximate analytical solutions are obtained by using the homotopy analysis method (HAM). The efficiency of the HAM is that it provides a practical way to control the convergence region of series solutions by introducing an auxiliary parameter }. Analytical results presented are in agreement with the existing results in open literature, which confirm the effectiveness of this method.

  12. Lower dimensional invariant tori with prescribed frequency for nonlinear wave equation

    NASA Astrophysics Data System (ADS)

    Geng, Jiansheng; Ren, Xiufang

    In this paper, one-dimensional (1D) nonlinear wave equation u-u+mu+u=0, subject to Dirichlet boundary conditions is considered. We show that for each given m>0, and each prescribed integer b>1, the above equation admits a Whitney smooth family of small-amplitude quasi-periodic solutions with b-dimensional Diophantine frequencies, which correspond to b-dimensional invariant tori of an associated infinite-dimensional dynamical system. In particular, these Diophantine frequencies are the small dilation of a prescribed Diophantine vector. The proof is based on a partial Birkhoff normal form reduction and an improved KAM method.

  13. On the effects of nonlinear boundary conditions in diffusive logistic equations on bounded domains

    NASA Astrophysics Data System (ADS)

    Cantrell, Robert Stephen; Cosner, Chris

    We study a diffusive logistic equation with nonlinear boundary conditions. The equation arises as a model for a population that grows logistically inside a patch and crosses the patch boundary at a rate that depends on the population density. Specifically, the rate at which the population crosses the boundary is assumed to decrease as the density of the population increases. The model is motivated by empirical work on the Glanville fritillary butterfly. We derive local and global bifurcation results which show that the model can have multiple equilibria and in some parameter ranges can support Allee effects. The analysis leads to eigenvalue problems with nonstandard boundary conditions.

  14. Search for a nonlinear variant of the Schroedinger equation by neutron interferometry

    SciTech Connect

    Shull, C.G.; Atwood, D.K.; Arthur, J.; Horne, M.A.

    1980-03-24

    A slow-neutron interferometer system has been used to test a nonlinear variant of the Schroedinger equation ih partialpsi(r,t)/partialt=(-h/sup 2//2m)del/sup 2/+U(r,t))psi -b ln(a/sup 3/vertical-barpsivertical-bar/sup 2/)psi. If this equation were correct, then, as Shimony has suggested, repositioning an attenuating plate downstream in a neutron beam would produce a phase modification. No measurable phase shift beyond experimental uncertainty was found and an upper limit of 3.4 x 10/sup -13/ eV for the energy constant b was established.

  15. Sqeezing generated by a nonlinear master equation and by amplifying-dissipative Hamiltonians

    NASA Technical Reports Server (NTRS)

    Dodonov, V. V.; Marchiolli, M. A.; Mizrahi, Solomon S.; Moussa, M. H. Y.

    1994-01-01

    In the first part of this contribution we show that the master equation derived from the generalized version of the nonlinear Doebner-Goldin equation leads to the squeezing of one of the quadratures. In the second part we consider two familiar Hamiltonians, the Bateman- Caldirola-Kanai and the optical parametric oscillator; going back to their classical Lagrangian form we introduce a stochastic force and a dissipative factor. From this new Lagrangian we obtain a modified Hamiltonian that treats adequately the simultaneous amplification and dissipation phenomena, presenting squeezing, too.

  16. Quasi-periodic solutions of a quasi-periodically forced nonlinear beam equation

    NASA Astrophysics Data System (ADS)

    Wang, Yi

    2012-06-01

    In this paper, one quasi-periodically forced nonlinear beam equation utt+uxxxx+μu+ɛg(ωt,x)u3=0,μ>0,x∈[0,π] with hinged boundary conditions is considered. Here ɛ is a small positive parameter, g( ωt, x) is real analytic in all variables and quasi-periodic in t with a frequency vector ω = ( ω1, ω2, … , ωm). It is proved that the above equation admits small-amplitude quasi-periodic solutions.

  17. Non-classical symmetries and invariant solutions of non-linear Dirac equations

    NASA Astrophysics Data System (ADS)

    Rocha, P. M. M.; Khanna, F. C.; Rocha Filho, T. M.; Santana, A. E.

    2015-09-01

    We apply Lie and non-classical symmetry methods to partial differential equations in order to derive solutions of the non-linear Dirac equation corresponding to the Gross-Neveu model in d = (1 + 1) and d = (2 + 1) space-time dimensions. For each d, we first identify sub-algebras of the Poincaré-Lie algebra and for each such sub-algebra, we calculate the invariant solution. Non-classical symmetries are also determined and used to derive new solutions for the Gross-Neveu model.

  18. A nonlinear parabolic equation with discontinuity in the highest order and applications

    NASA Astrophysics Data System (ADS)

    Chen, Robin Ming; Liu, Qing

    2016-01-01

    In this paper we establish a viscosity solution theory for a class of nonlinear parabolic equations with discontinuities of the sign function type in the second derivatives of the unknown function. We modify the definition of classical viscosity solutions and show uniqueness and existence of the solutions. These results are related to the limit behavior for the motion of a curve by a very small power of its curvature, which has applications in image processing. We also discuss the relation between our equation and the total variation flow in one space dimension.

  19. Quasi-periodic solutions of nonlinear beam equation with prescribed frequencies

    SciTech Connect

    Chang, Jing; Gao, Yixian Li, Yong

    2015-05-15

    Consider the one dimensional nonlinear beam equation u{sub tt} + u{sub xxxx} + mu + u{sup 3} = 0 under Dirichlet boundary conditions. We show that for any m > 0 but a set of small Lebesgue measure, the above equation admits a family of small-amplitude quasi-periodic solutions with n-dimensional Diophantine frequencies. These Diophantine frequencies are the small dilation of a prescribed Diophantine vector. The proofs are based on an infinite dimensional Kolmogorov-Arnold-Moser iteration procedure and a partial Birkhoff normal form. .

  20. Fourth order exponential time differencing method with local discontinuous Galerkin approximation for coupled nonlinear Schrodinger equations

    SciTech Connect

    Liang, Xiao; Khaliq, Abdul Q. M.; Xing, Yulong

    2015-01-23

    In this paper, we study a local discontinuous Galerkin method combined with fourth order exponential time differencing Runge-Kutta time discretization and a fourth order conservative method for solving the nonlinear Schrödinger equations. Based on different choices of numerical fluxes, we propose both energy-conserving and energy-dissipative local discontinuous Galerkin methods, and have proven the error estimates for the semi-discrete methods applied to linear Schrödinger equation. The numerical methods are proven to be highly efficient and stable for long-range soliton computations. Finally, extensive numerical examples are provided to illustrate the accuracy, efficiency and reliability of the proposed methods.

  1. Presentation of special series with computed recurrently coefficients of solutions of nonlinear evolution equations

    NASA Astrophysics Data System (ADS)

    Filimonov, M.; Masih, A.

    2016-06-01

    One of the analytical methods of presenting solutions of nonlinear partial differential equations is the method of special series in powers of specially selected functions called basis functions. The coefficients of such series are found successively as solutions of linear differential equations. To find recurrence, the coefficient is achieved by the choice of basis functions, which may also contain arbitrary functions. By using such functional arbitrariness, it allows in some cases to prove the global convergence of the corresponding constructed series, as well as the solvability of the boundary value problem.

  2. Global existence and nonexistence of the solution of a forced nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Guo, Bo-ling; Wu, Yong-hui

    1995-07-01

    In this article, we prove that the solution of the forced nonlinear Schrödinger equation (1.1) below for u0∈H1 and Q(t)∈C1 with u0(0)=Q(0) exists globally if and only if ∫T0||Q'(t)||2 dt<∞. This result positively answers the conjecture of Q. Y. Bu [``On well-posedness of the forced NLS equation,'' Appl. Anal. 46, 219-239 (1992)].

  3. Time Periodic Solutions to the One-Dimensional Nonlinear Wave Equation

    NASA Astrophysics Data System (ADS)

    Ji, Shuguan; Li, Yong

    2011-02-01

    This paper is concerned with the time periodic solutions to the one-dimensional nonlinear wave equation with either variable or constant coefficients. By adjusting the basis of L 2 function space, we can circumvent the difficulties caused by η u = 0 and obtain the existence of a weak periodic solution, which was posed as an open problem by Baubu and Pavel in (Trans Am Math Soc 349:2035-2048, 1997). Finally, an application to the forced Sine-Gordon equation is presented to illustrate the utility of this technique.

  4. Nonlinear fractional Schrödinger equation on a half-line

    NASA Astrophysics Data System (ADS)

    Kaikina, Elena I.

    2015-09-01

    We study the initial-boundary value (IBV) problem for the nonlinear fractional Schrödinger equation {u t + i u x x + i |u|2 u + i|∂x|1/2 u = 0 , t > 0 , x > 0 u ( x , 0 ) = u 0 ( x ) , x > 0 , u ( 0 , t ) = h ( t ) , t > 0 , where |∂ x|1/2 u = /1 √{ 2 π } ∫ 0 ∞ /sign ( x - y ) √{|x-y|} u y ( y ) d y . We prove the global in time existence of solutions of IBV problem for nonlinear fractional Schrödinger equation with inhomogeneous Dirichlet boundary conditions. Also, we are interested in the study of the asymptotic behavior of solutions.

  5. The solution of non-linear hyperbolic equation systems by the finite element method

    NASA Technical Reports Server (NTRS)

    Loehner, R.; Morgan, K.; Zienkiewicz, O. C.

    1984-01-01

    A finite-element method for the solution of nonlinear hyperbolic systems of equations, such as those encountered in non-self-adjoint problems of transient phenomena in convection-diffusion or in the mixed representation of wave problems, is developed and demonstrated. The problem is rewritten in moving coordinates and reinterpolated to the original mesh by a Taylor expansion prior to a standard Galerkin spatial discretization, and it is shown that this procedure is equivalent to the time-discretization approach of Donea (1984). Numerical results for sample problems are presented graphically, including such shallow-water problems as the breaking of a dam, the shoaling of a wave, and the outflow of a river; compressible flows such as the isothermal flow in a nozzle and the Riemann shock-tube problem; and the two-dimensional scalar-advection, nonlinear-shallow-water, and Euler equations.

  6. A Haar wavelet collocation method for coupled nonlinear Schrödinger-KdV equations

    NASA Astrophysics Data System (ADS)

    Oruç, Ömer; Esen, Alaattin; Bulut, Fatih

    2016-04-01

    In this paper, to obtain accurate numerical solutions of coupled nonlinear Schrödinger-Korteweg-de Vries (KdV) equations a Haar wavelet collocation method is proposed. An explicit time stepping scheme is used for discretization of time derivatives and nonlinear terms that appeared in the equations are linearized by a linearization technique and space derivatives are discretized by Haar wavelets. In order to test the accuracy and reliability of the proposed method L2, L∞ error norms and conserved quantities are used. Also obtained results are compared with previous ones obtained by finite element method, Crank-Nicolson method and radial basis function meshless methods. Error analysis of Haar wavelets is also given.

  7. Nonlinear self-adjointness and conservation laws of Klein-Gordon-Fock equation with central symmetry

    NASA Astrophysics Data System (ADS)

    Abdulwahhab, Muhammad Alim

    2015-05-01

    The concept of nonlinear self-adjointness, introduced by Ibragimov, has significantly extends approaches to constructing conservation laws associated with symmetries since it incorporates the strict self-adjointness, the quasi self-adjointness as well as the usual linear self-adjointness. Using this concept, the nonlinear self-adjointness condition for the Klein-Gordon-Fock equation was established and subsequently used to construct simplified but infinitely many nontrivial and independent conserved vectors. The Noether's theorem was further applied to the Klein-Gordon-Fock equation to explore more distinct first integrals, result shows that conservation laws constructed through this approach are exactly the same as those obtained under strict self-adjointness of Ibragimov's method.

  8. Dynamical analysis of strongly nonlinear fractional-order Mathieu-Duffing equation

    NASA Astrophysics Data System (ADS)

    Wen, Shao-Fang; Shen, Yong-Jun; Wang, Xiao-Na; Yang, Shao-Pu; Xing, Hai-Jun

    2016-08-01

    In this paper, the computation schemes for periodic solutions of the forced fractional-order Mathieu-Duffing equation are derived based on incremental harmonic balance (IHB) method. The general forms of periodic solutions are founded by the IHB method, which could be useful to obtain the periodic solutions with higher precision. The comparisons of the approximate analytical solutions by the IHB method and numerical integration are fulfilled, and the results certify the correctness and higher precision of the solutions by the IHB method. The dynamical analysis of strongly nonlinear fractional-order Mathieu-Duffing equation is investigated by the IHB method. Then, the effects of the excitation frequency, fractional order, fractional coefficient, and nonlinear stiffness coefficient on the complex dynamical behaviors are analyzed. At last, the detailed results are summarized and the conclusions are made, which present some useful information to analyze and/or control the dynamical response of this kind of system.

  9. Parallel domain decomposition and the solution of nonlinear systems of equations

    SciTech Connect

    Gropp, W.D. ); Keyes, D.E. . Dept. of Mechanical Engineering)

    1990-01-01

    Many linear systems arise as subproblems in the solution of nonlinear equations, either as part of a simple fixed-point of a Newton's method iteration. This paper considers the use of domain decomposition techniques for the solution of these linear problems in the context of solving a multicomponent system of nonlinear equations on two types of parallel processors. One of the computations is drawn from fluid dynamics and includes locally refined grids. Such problems require great computational resources, and domain, decomposition seems to offer a way to efficiently solve these problems on computers with significant parallelism. The domain decomposition approach used is as in Gropp and Keyes, modified to achieve better parallelism and to reduce the computational work. 13 refs., 2 figs., 5 tabs.

  10. Dynamical analysis of strongly nonlinear fractional-order Mathieu-Duffing equation.

    PubMed

    Wen, Shao-Fang; Shen, Yong-Jun; Wang, Xiao-Na; Yang, Shao-Pu; Xing, Hai-Jun

    2016-08-01

    In this paper, the computation schemes for periodic solutions of the forced fractional-order Mathieu-Duffing equation are derived based on incremental harmonic balance (IHB) method. The general forms of periodic solutions are founded by the IHB method, which could be useful to obtain the periodic solutions with higher precision. The comparisons of the approximate analytical solutions by the IHB method and numerical integration are fulfilled, and the results certify the correctness and higher precision of the solutions by the IHB method. The dynamical analysis of strongly nonlinear fractional-order Mathieu-Duffing equation is investigated by the IHB method. Then, the effects of the excitation frequency, fractional order, fractional coefficient, and nonlinear stiffness coefficient on the complex dynamical behaviors are analyzed. At last, the detailed results are summarized and the conclusions are made, which present some useful information to analyze and/or control the dynamical response of this kind of system. PMID:27586626

  11. On solvability of inverse coefficient problems for nonlinear convection—diffusion—reaction equation

    NASA Astrophysics Data System (ADS)

    Brizitskii, R. V.; Saritskaya, Zh Yu

    2016-06-01

    An inverse coefficient problem is considered for a stationary nonlinear convection- diffusion-reaction equation, in which reaction coefficient has a rather common dependence on substance concentration and on spacial variable. The solvability of the considered nonlinear boundary value problem is proved in a general case. The existence of solutions of the inverse problem is proved for the reaction coefficients, which are defined by the product of two functions. The first function depends on a spatial variable, the second one depends nonlinearly on the solution of the boundary value problem. The mentioned inverse problem consists in reconstructing the first function with the help of additional information provided by the solution of the boundary value problem.

  12. Collapse for the higher-order nonlinear Schrödinger equation

    DOE PAGESBeta

    Achilleos, V.; Diamantidis, S.; Frantzeskakis, D. J.; Horikis, T. P.; Karachalios, N. I.; Kevrekidis, P. G.

    2016-02-01

    We examine conditions for finite-time collapse of the solutions of the higher-order nonlinear Schr odinger (NLS) equation incorporating third-order dispersion, self-steepening, linear and nonlinear gain and loss, and Raman scattering; this is a system that appears in many physical contexts as a more realistic generalization of the integrable NLS. By using energy arguments, it is found that the collapse dynamics is chiefly controlled by the linear/nonlinear gain/loss strengths. We identify a critical value of the linear gain, separating the possible decay of solutions to the trivial zero-state, from collapse. The numerical simulations, performed for a wide class of initial data,more » are found to be in very good agreement with the analytical results, and reveal long-time stability properties of localized solutions. The role of the higher-order effects to the transient dynamics is also revealed in these simulations.« less

  13. Strong collapse turbulence in a quintic nonlinear Schrödinger equation.

    PubMed

    Chung, Yeojin; Lushnikov, Pavel M

    2011-09-01

    We consider the quintic one-dimensional nonlinear Schrödinger equation with forcing and both linear and nonlinear dissipation. Quintic nonlinearity results in multiple collapse events randomly distributed in space and time, forming forced turbulence. Without dissipation each of these collapses produces finite-time singularity, but dissipative terms prevent actual formation of singularity. In statistical steady state of the developed turbulence, the spatial correlation function has a universal form with the correlation length determined by the modulational instability scale. The amplitude fluctuations at that scale are nearly Gaussian while the large-amplitude tail of the probability density function (PDF) is strongly non-Gaussian with powerlike behavior. The small-amplitude nearly Gaussian fluctuations seed formation of large collapse events. The universal spatiotemporal form of these events together with the PDFs for their maximum amplitudes define the powerlike tail of the PDF for large-amplitude fluctuations, i.e., the intermittency of strong turbulence. PMID:22060517

  14. Controlled Nonlinear Stochastic Delay Equations: Part II: Approximations and Pipe-Flow Representations

    SciTech Connect

    Kushner, Harold J.

    2012-08-15

    This is the second part of a work dealing with key issues that have not been addressed in the modeling and numerical optimization of nonlinear stochastic delay systems. We consider new classes of models, such as those with nonlinear functions of several controls (such as products), each with is own delay, controlled random Poisson measure driving terms, admissions control with delayed retrials, and others. Part I was concerned with issues concerning the class of admissible controls and their approximations, since the classical definitions are inadequate for our models. This part is concerned with transportation equation representations and their approximations. Such representations of nonlinear stochastic delay models have been crucial in the development of numerical algorithms with much reduced memory and computational requirements. The representations for the new models are not obvious and are developed. They also provide a template for the adaptation of the Markov chain approximation numerical methods.

  15. Extended Painlevé Expansion, Nonstandard Truncation and Special Reductions of Nonlinear Evolution Equations

    NASA Astrophysics Data System (ADS)

    Lou, Sen-yue

    1998-05-01

    To study a nonlinear partial differential equation (PDE), the Painleve expansion developed by Weiss, Tabor and Carnevale (WTC) is one of the most powerful methods. In this paper, using any singular manifold, the expansion series in the usual Painleve analysis is shown to be resummable in some different ways. A simple nonstandard truncated expansion with a quite universal reduction function is used for many nonlinear integrable and nonintegrable PDEs such as the Burgers, Korteweg de-Vries (KdV), Kadomtsev-Petviashvli (KP), Caudrey-Dodd-Gibbon-Sawada-Kortera (CDGSK), Nonlinear Schrödinger (NLS), Davey-Stewartson (DS), Broer-Kaup (BK), KdV-Burgers (KdVB), λf4 , sine-Gordon (sG) etc.

  16. Chirped Peregrine solitons in a class of cubic-quintic nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Chen, Shihua; Baronio, Fabio; Soto-Crespo, Jose M.; Liu, Yi; Grelu, Philippe

    2016-06-01

    We shed light on the fundamental form of the Peregrine soliton as well as on its frequency chirping property by virtue of a pertinent cubic-quintic nonlinear Schrödinger equation. An exact generic Peregrine soliton solution is obtained via a simple gauge transformation, which unifies the recently-most-studied fundamental rogue-wave species. We discover that this type of Peregrine soliton, viable for both the focusing and defocusing Kerr nonlinearities, could exhibit an extra doubly localized chirp while keeping the characteristic intensity features of the original Peregrine soliton, hence the term chirped Peregrine soliton. The existence of chirped Peregrine solitons in a self-defocusing nonlinear medium may be attributed to the presence of self-steepening effect when the latter is not balanced out by the third-order dispersion. We numerically confirm the robustness of such chirped Peregrine solitons in spite of the onset of modulation instability.

  17. Nonlinear alternatives of Schauder and Krasnosel'skij types with applications to Hammerstein integral equations in L spaces

    NASA Astrophysics Data System (ADS)

    Djebali, Smaïl; Sahnoun, Zahira

    This paper is devoted to establishing new variants of some nonlinear alternatives of Leray-Schauder and Krasnosel'skij type involving the weak topology of Banach spaces. The De Blasi measure of weak noncompactness is used. An application to solving a nonlinear Hammerstein integral equation in L spaces is given. Our results complement recent ones in [K. Latrach, M.A. Taoudi, A. Zeghal, Some fixed point theorems of the Schauder and the Krasnosel'skij type and application to nonlinear transport equations, J. Differential Equations 221 (2006) 256-2710] and [K. Latrach, M.A. Taoudi, Existence results for a generalized nonlinear Hammerstein equation on L spaces, Nonlinear Anal. 66 (2007) 2325-2333].

  18. Investigating stability using nonlinear quasihomogeneous approximation to differential equations with impulsive action

    SciTech Connect

    Dvirny, A. I.; Slyn'ko, V. I. E-mail: vitstab@ukr.net

    2014-06-01

    Inverse theorems to Lyapunov's direct method are established for quasihomogeneous systems of differential equations with impulsive action. Conditions for the existence of Lyapunov functions satisfying typical bounds for quasihomogeneous functions are obtained. Using these results, we establish conditions for an equilibrium of a nonlinear system with impulsive action to be stable, using the properties of a quasihomogeneous approximation to the system. The results are illustrated by an example of a large-scale system with homogeneous subsystems. Bibliography: 30 titles. (paper)

  19. The modulational instability for the TDNLS equations for weakly nonlinear dispersive MHD waves

    NASA Technical Reports Server (NTRS)

    Webb, G. M.; Brio, M.; Zank, G. P.

    1995-01-01

    In this paper we study the modulational instability for the TDNLS equations derived by Hada (1993) and Brio, Hunter, and Johnson to describe the propagation of weakly nonlinear dispersive MHD waves in beta approximately 1 plasmas. We employ Whitham's averaged Lagrangian method to study the modulational instability. This complements studies of the modulational instability by Hada (1993) and Hollweg (1994), who did not use the averaged Lagrangian approach.

  20. Exact Solutions and Bifurcations of a Modulated Equation in a Discrete Nonlinear Electrical Transmission Line (III)

    NASA Astrophysics Data System (ADS)

    Li, Jibin; Chen, Fengjuan

    In this paper, we consider a modulated equation in a discrete nonlinear electrical transmission line. This model is an integrable planar dynamical system having three singular straight lines. By using the theory of singular systems to investigate the dynamical behavior for this system, we obtain bifurcations of phase portraits under different parameter conditions. Corresponding to some special level curves, we derive exact explicit parametric representations of solutions (including smooth solitary wave solutions, peakons, compactons, periodic cusp wave solutions) under different parameter conditions.

  1. A combined modification of Newton`s method for systems of nonlinear equations

    SciTech Connect

    Monteiro, M.T.; Fernandes, E.M.G.P.

    1996-12-31

    To improve the performance of Newton`s method for the solution of systems of nonlinear equations a modification to the Newton iteration is implemented. The modified step is taken as a linear combination of Newton step and steepest descent directions. In the paper we describe how the coefficients of the combination can be generated to make effective use of the two component steps. Numerical results that show the usefulness of the combined modification are presented.

  2. Hamiltonian structures of nonlinear evolution equations connected with a polynomial pencil

    SciTech Connect

    Gadzhiev, I.T.; Gerdzhikov, V.S.; Ivanov, M.I.

    1986-09-10

    For a generalized Zakharov-Shabat system in which the matrix potential is a polynomial in the spectral parameter a generating operator is constructed which makes it possible to compactly write out the nonlinear evolution equations (NEE) connected with the system. The eigenfunctions of the generating operator - the squares of solutions of the original system - are found. The Hamiltonian property of the NEE and the existence of a hierarchy of Hamiltonian structures are established.

  3. Hamiltonian structures of nonlinear evolution equations associated with a polynomial bundle

    SciTech Connect

    Gadzhiev, I.T.; Gerdzhikov, V.S.; Ivanov, M.I.

    1987-05-20

    For the generalized Zakharov-Shabat system with the matrix potential a polynomial in the spectral parameter, they construct a generating operator which leads to a compact representation of the nonlinear evolution equations (NEE) associated with the system. The eigenfunctions of the generating operator are obtained as the squares of the solutions of the original system. The Hamiltonian nature of the NEE and the existence of a hierarchy of Hamiltonian structures is established.

  4. Hamiltonian structures of nonlinear evolution equations connected with a polynomial pencil

    SciTech Connect

    Gadzhiev, I.T.; Gerdzhikov, V.S.; Ivanov, M.I.

    1986-09-01

    For a generalized Zakharov-Shabat system in which the matrix potential is a polynomial in the spectral parameter a generating operator is constructed which makes it possible to compactly write out the nonlinear evolution equations (NEE) connected with the system. The eigenfunctions of the generating operator - the ''squares'' of solutions of the original system - are found. The Hamiltonian property of the NEE and the existence of a hierachy of Hamiltonian structures are established.

  5. A Family of Ellipse Methods for Solving Non-Linear Equations

    ERIC Educational Resources Information Center

    Gupta, K. C.; Kanwar, V.; Kumar, Sanjeev

    2009-01-01

    This note presents a method for the numerical approximation of simple zeros of a non-linear equation in one variable. In order to do so, the method uses an ellipse rather than a tangent approach. The main advantage of our method is that it does not fail even if the derivative of the function is either zero or very small in the vicinity of the…

  6. Modeling relativistic soliton interactions in overdense plasmas: a perturbed nonlinear Schrödinger equation framework.

    PubMed

    Siminos, E; Sánchez-Arriaga, G; Saxena, V; Kourakis, I

    2014-12-01

    We investigate the dynamics of localized solutions of the relativistic cold-fluid plasma model in the small but finite amplitude limit, for slightly overcritical plasma density. Adopting a multiple scale analysis, we derive a perturbed nonlinear Schrödinger equation that describes the evolution of the envelope of circularly polarized electromagnetic field. Retaining terms up to fifth order in the small perturbation parameter, we derive a self-consistent framework for the description of the plasma response in the presence of localized electromagnetic field. The formalism is applied to standing electromagnetic soliton interactions and the results are validated by simulations of the full cold-fluid model. To lowest order, a cubic nonlinear Schrödinger equation with a focusing nonlinearity is recovered. Classical quasiparticle theory is used to obtain analytical estimates for the collision time and minimum distance of approach between solitons. For larger soliton amplitudes the inclusion of the fifth-order terms is essential for a qualitatively correct description of soliton interactions. The defocusing quintic nonlinearity leads to inelastic soliton collisions, while bound states of solitons do not persist under perturbations in the initial phase or amplitude. PMID:25615203

  7. High-order numerical solution of the nonlinear Helmholtz equation with axial symmetry

    NASA Astrophysics Data System (ADS)

    Baruch, G.; Fibich, G.; Tsynkov, S.

    2007-07-01

    The nonlinear Helmholtz (NLH) equation models the propagation of intense laser beams in a Kerr medium. The NLH takes into account the effects of nonparaxiality and backward scattering that are neglected in the more common nonlinear Schrodinger model. In [G. Fibich, S. Tsynkov, High-order two-way artificial boundary conditions for nonlinear wave propagation with backscattering, J. Comput. Phys., 171 (2001) 632-677] and [G. Fibich, S. Tsynkov, Numerical solution of the nonlinear Helmholtz equation using nonorthogonal expansions, J. Comput. Phys., 210 (2005) 183-224], a novel high-order numerical method for solving the NLH was introduced and implemented in the case of a two-dimensional Cartesian geometry. The NLH was solved iteratively, using the separation of variables and a special nonlocal two-way artificial boundary condition applied to the resulting decoupled linear systems. In the current paper, we propose a major improvement to the previous method. Instead of using LU decomposition after the separation of variables, we employ an efficient summation rule that evaluates convolution with the discrete Green's function. We also extend the method to a three-dimensional setting with cylindrical symmetry, under both Dirichlet and Sommerfeld-type transverse boundary conditions.

  8. Multiple re-encounter approach to radical pair reactions and the role of nonlinear master equations

    SciTech Connect

    Clausen, Jens; Tiersch, Markus; Briegel, Hans J.; Guerreschi, Gian Giacomo

    2014-08-07

    We formulate a multiple-encounter model of the radical pair mechanism that is based on a random coupling of the radical pair to a minimal model environment. These occasional pulse-like couplings correspond to the radical encounters and give rise to both dephasing and recombination. While this is in agreement with the original model of Haberkorn and its extensions that assume additional dephasing, we show how a nonlinear master equation may be constructed to describe the conditional evolution of the radical pairs prior to the detection of their recombination. We propose a nonlinear master equation for the evolution of an ensemble of independently evolving radical pairs whose nonlinearity depends on the record of the fluorescence signal. We also reformulate Haberkorn's original argument on the physicality of reaction operators using the terminology of quantum optics/open quantum systems. Our model allows one to describe multiple encounters within the exponential model and connects this with the master equation approach. We include hitherto neglected effects of the encounters, such as a separate dephasing in the triplet subspace, and predict potential new effects, such as Grover reflections of radical spins, that may be observed if the strength and time of the encounters can be experimentally controlled.

  9. Wave operators to a quadratic nonlinear Klein-Gordon equation in two space dimensions revisited

    NASA Astrophysics Data System (ADS)

    Hayashi, Nakao; Naumkin, Pavel I.; Tonegawa, Satoshi

    2012-08-01

    We continue to study the existence of the wave operators for the nonlinear Klein-Gordon equation with quadratic nonlinearity in two space dimensions {(partialt2-Δ+m2) u=λ u2,( t,x) in{R}×{R}2}. We prove that if u1+in{H}^{3/2+3γ,1}( {R}2),{ }u2+in{H}^{1/2+3γ,1}( {R} 2), where {γin( 0,1/4)} and the norm {Vert u1+Vert_{{H}1^{3/2+γ}}+Vert u2+Vert_{{H}1^{1/2+γ}}≤ρ,} then there exist ρ > 0 and T > 1 such that the nonlinear Klein-Gordon equation has a unique global solution {uin{C}( [ T,infty) ;{H}^{1/2}( {R}2) ) } satisfying the asymptotics Vert u( t) -u0 ( t) Vert _{{H}^{1/2}} ≤ Ct^{-1/2-γ} for all t > T, where u 0 denotes the solution of the free Klein-Gordon equation.

  10. Dynamics of nonlinear waves in two-dimensional cubic-quintic nonlinear Schrödinger equation with spatially modulated nonlinearities and potentials.

    PubMed

    Xu, Si-Liu; Cheng, Jia-Xi; Belić, Milivoj R; Hu, Zheng-Long; Zhao, Yuan

    2016-05-01

    We derive analytical solutions to the cubic-quintic nonlinear Schrödinger equation with potentials and nonlinearities depending on both propagation distance and transverse space. Among other, circle solitons and multi-peaked vortex solitons are found. These solitary waves propagate self-similarly and are characterized by three parameters, the modal numbers m and n, and the modulation depth of intensity. We find that the stable fundamental solitons with m = 0 and the low-order solitons with m = 1, n ≤ 2 can be supported with the energy eigenvalues E = 0 and E ≠ 0. However, higher-order solitons display unstable propagation over prolonged distances. The stability of solutions is examined by numerical simulations. PMID:27137617

  11. POD/DEIM nonlinear model order reduction of an ADI implicit shallow water equations model

    NASA Astrophysics Data System (ADS)

    Ştefănescu, R.; Navon, I. M.

    2013-03-01

    In the present paper we consider a 2-D shallow-water equations (SWE) model on a β-plane solved using an alternating direction fully implicit (ADI) finite-difference scheme on a rectangular domain. The scheme was shown to be unconditionally stable for the linearized equations. The discretization yields a number of nonlinear systems of algebraic equations. We then use a proper orthogonal decomposition (POD) to reduce the dimension of the SWE model. Due to the model nonlinearities, the computational complexity of the reduced model still depends on the number of variables of the full shallow - water equations model. By employing the discrete empirical interpolation method (DEIM) we reduce the computational complexity of the reduced order model due to its depending on the nonlinear full dimension model and regain the full model reduction expected from the POD model. To emphasize the CPU gain in performance due to use of POD/DEIM, we also propose testing an explicit Euler finite difference scheme (EE) as an alternative to the ADI implicit scheme for solving the swallow water equations model. We then proceed to assess the efficiency of POD/DEIM as a function of number of spatial discretization points, time steps, and POD basis functions. As was expected, our numerical experiments showed that the CPU time performances of POD/DEIM schemes are proportional to the number of mesh points. Once the number of spatial discretization points exceeded 10000 and for 90 DEIM interpolation points, the CPU time decreased by a factor of 10 in case of POD/DEIM implicit SWE scheme and by a factor of 15 for the POD/DEIM explicit SWE scheme in comparison with the corresponding POD SWE schemes. Moreover, our numerical tests revealed that if the number of points selected by DEIM algorithm reached 50, the approximation errors due to POD/DEIM and POD reduced systems have the same orders of magnitude, thus supporting the theoretical results existing in the literature.

  12. Integrable nonlinear Schrödinger equation on simple networks: connection formula at vertices.

    PubMed

    Sobirov, Z; Matrasulov, D; Sabirov, K; Sawada, S; Nakamura, K

    2010-06-01

    We study the case in which the nonlinear Schrödinger equation (NLSE) on simple networks consisting of vertices and bonds has an infinite number of constants of motion and becomes completely integrable just as in the case of a simple one-dimensional (1D) chain. Here the strength of cubic nonlinearity is different from bond to bond, and networks are assumed to have at least two semi-infinite bonds with one of them working as an incoming bond. The connection formula at vertices obtained from norm and energy conservation rules shows (1) the solution on each bond is a part of the universal (bond-independent) soliton solution of the completely integrable NLSE on the 1D chain, but is multiplied by the inverse of square root of bond-dependent nonlinearity; (2) nonlinearities at individual bonds around each vertex must satisfy a sum rule. Under these conditions, we also showed an infinite number of constants of motion. The argument on a branched chain or a primary star graph is generalized to other graphs, i.e., general star graphs, tree graphs, loop graphs and their combinations. As a relevant issue, with use of reflectionless propagation of Zakharov-Shabat's soliton through networks we have obtained the transmission probabilities on the outgoing bonds, which are inversely proportional to the bond-dependent strength of nonlinearity. Numerical evidence is also given to verify the prediction. PMID:20866536

  13. Transport in simple networks described by an integrable discrete nonlinear Schrödinger equation.

    PubMed

    Nakamura, K; Sobirov, Z A; Matrasulov, D U; Sawada, S

    2011-08-01

    We elucidate the case in which the Ablowitz-Ladik (AL)-type discrete nonlinear Schrödinger equation (NLSE) on simple networks (e.g., star graphs and tree graphs) becomes completely integrable just as in the case of a simple one-dimensional (1D) discrete chain. The strength of cubic nonlinearity is different from bond to bond, and networks are assumed to have at least two semi-infinite bonds with one of them working as an incoming bond. The present work is a nontrivial extension of our preceding one [Sobirov et al., Phys. Rev. E 81, 066602 (2010)] on the continuum NLSE to the discrete case. We find (1) the solution on each bond is a part of the universal (bond-independent) AL soliton solution on the 1D discrete chain, but it is multiplied by the inverse of the square root of bond-dependent nonlinearity; (2) nonlinearities at individual bonds around each vertex must satisfy a sum rule; and (3) under findings 1 and 2, there exist an infinite number of constants of motion. As a practical issue, with the use of an AL soliton injected through the incoming bond, we obtain transmission probabilities inversely proportional to the strength of nonlinearity on the outgoing bonds. PMID:21929130

  14. Integrable nonlinear Schrödinger equation on simple networks: Connection formula at vertices

    NASA Astrophysics Data System (ADS)

    Sobirov, Z.; Matrasulov, D.; Sabirov, K.; Sawada, S.; Nakamura, K.

    2010-06-01

    We study the case in which the nonlinear Schrödinger equation (NLSE) on simple networks consisting of vertices and bonds has an infinite number of constants of motion and becomes completely integrable just as in the case of a simple one-dimensional (1D) chain. Here the strength of cubic nonlinearity is different from bond to bond, and networks are assumed to have at least two semi-infinite bonds with one of them working as an incoming bond. The connection formula at vertices obtained from norm and energy conservation rules shows (1) the solution on each bond is a part of the universal (bond-independent) soliton solution of the completely integrable NLSE on the 1D chain, but is multiplied by the inverse of square root of bond-dependent nonlinearity; (2) nonlinearities at individual bonds around each vertex must satisfy a sum rule. Under these conditions, we also showed an infinite number of constants of motion. The argument on a branched chain or a primary star graph is generalized to other graphs, i.e., general star graphs, tree graphs, loop graphs and their combinations. As a relevant issue, with use of reflectionless propagation of Zakharov-Shabat’s soliton through networks we have obtained the transmission probabilities on the outgoing bonds, which are inversely proportional to the bond-dependent strength of nonlinearity. Numerical evidence is also given to verify the prediction.

  15. A new nonlinear turbulence model based on Partially-Averaged Navier-Stokes Equations

    NASA Astrophysics Data System (ADS)

    Liu, J. T.; Wu, Y. L.; Cai, C.; Liu, S. H.; Wang, L. Q.

    2013-12-01

    Partially-averaged Navier-Stokes (PANS) Model was recognized as a Reynolds-averaged Navier-Stokes (RANS) to direct numerical simulation (DNS) bridging method. PANS model was purported for any filter width-from RANS to DNS. PANS method also shared some similarities with the currently popular URANS (unsteady RANS) method. In this paper, a new PANS model was proposed, which was based on RNG k-ε turbulence model. The Standard and RNG k-ε turbulence model were both isotropic models, as well as PANS models. The sheer stress in those PANS models was solved by linear equation. The linear hypothesis was not accurate in the simulation of complex flow, such as stall phenomenon. The sheer stress here was solved by nonlinear method proposed by Ehrhard. Then, the nonlinear PANS model was set up. The pressure coefficient of the suction side of the NACA0015 hydrofoil was predicted. The result of pressure coefficient agrees well with experimental result, which proves that the nonlinear PANS model can capture the high pressure gradient flow. A low specific centrifugal pump was used to verify the capacity of the nonlinear PANS model. The comparison between the simulation results of the centrifugal pump and Particle Image Velocimetry (PIV) results proves that the nonlinear PANS model can be used in the prediction of complex flow field.

  16. THE LOSS OF ACCURACY OF STOCHASTIC COLLOCATION METHOD IN SOLVING NONLINEAR DIFFERENTIAL EQUATIONS WITH RANDOM INPUT DATA

    SciTech Connect

    Webster, Clayton G; Tran, Hoang A; Trenchea, Catalin S

    2013-01-01

    n this paper we show how stochastic collocation method (SCM) could fail to con- verge for nonlinear differential equations with random coefficients. First, we consider Navier-Stokes equation with uncertain viscosity and derive error estimates for stochastic collocation discretization. Our analysis gives some indicators on how the nonlinearity negatively affects the accuracy of the method. The stochastic collocation method is then applied to noisy Lorenz system. Simulation re- sults demonstrate that the solution of a nonlinear equation could be highly irregular on the random data and in such cases, stochastic collocation method cannot capture the correct solution.

  17. Second-order non-iterative ADI solution of non-linear partial differential equations. [Alternating Direction Implicit scheme

    NASA Technical Reports Server (NTRS)

    Wolfshtein, M.; Hirsh, R. S.; Pitts, B. H.

    1975-01-01

    A new method for the solution of non-linear partial differential equations by an ADI procedure is described. Although the method is second order accurate in time, it does not require either iterations or predictor corrector methods to overcome the nonlinearity of the equations. Thus the computational effort required for the solution of the non-linear problem becomes similar to that required for the linear case. The method is applied to a two-dimensional 'extended Burgers equation'. Linear stability is studied, and some numerical solutions obtained. The improved accuracy obtained by the 2nd order truncation error is clearly manifested.

  18. Nonlinear flap-lag-axial equations of a rotating beam with arbitrary precone angle

    NASA Technical Reports Server (NTRS)

    Kvaternik, R. G.; White, W. F., Jr.; Kaza, K. R. V.

    1978-01-01

    In an attempt both to unify and extend the analytical basis of several aspects of the dynamic behavior of flexible rotating beams, the second-degree nonlinear equations of motion for the coupled flapwise bending, lagwise bending, and axial extension of an untwisted, torsionally rigid, nonuniform, rotating beam having an arbitrary angle of precone with the plane perpendicular to the axis of rotation are derived using Hamilton's principle. The derivation of the equations is based on the geometric nonlinear theory of elasticity and the resulting equations are consistent with the assumption that the strains are negligible compared to unity. No restrictions are imposed on the relative displacements or angular rotations of the cross sections of the beam other than those implied by the assumption of small strains. Illustrative numerical results, obtained by using an integrating matrix as the basis for the method of solution, are presented both for the purpose of validating the present method of solution and indicating the range of applicability of the equations of motion and the method of solution.

  19. Discovering governing equations from data by sparse identification of nonlinear dynamical systems.

    PubMed

    Brunton, Steven L; Proctor, Joshua L; Kutz, J Nathan

    2016-04-12

    Extracting governing equations from data is a central challenge in many diverse areas of science and engineering. Data are abundant whereas models often remain elusive, as in climate science, neuroscience, ecology, finance, and epidemiology, to name only a few examples. In this work, we combine sparsity-promoting techniques and machine learning with nonlinear dynamical systems to discover governing equations from noisy measurement data. The only assumption about the structure of the model is that there are only a few important terms that govern the dynamics, so that the equations are sparse in the space of possible functions; this assumption holds for many physical systems in an appropriate basis. In particular, we use sparse regression to determine the fewest terms in the dynamic governing equations required to accurately represent the data. This results in parsimonious models that balance accuracy with model complexity to avoid overfitting. We demonstrate the algorithm on a wide range of problems, from simple canonical systems, including linear and nonlinear oscillators and the chaotic Lorenz system, to the fluid vortex shedding behind an obstacle. The fluid example illustrates the ability of this method to discover the underlying dynamics of a system that took experts in the community nearly 30 years to resolve. We also show that this method generalizes to parameterized systems and systems that are time-varying or have external forcing. PMID:27035946

  20. Discovering governing equations from data by sparse identification of nonlinear dynamical systems

    PubMed Central

    Brunton, Steven L.; Proctor, Joshua L.; Kutz, J. Nathan

    2016-01-01

    Extracting governing equations from data is a central challenge in many diverse areas of science and engineering. Data are abundant whereas models often remain elusive, as in climate science, neuroscience, ecology, finance, and epidemiology, to name only a few examples. In this work, we combine sparsity-promoting techniques and machine learning with nonlinear dynamical systems to discover governing equations from noisy measurement data. The only assumption about the structure of the model is that there are only a few important terms that govern the dynamics, so that the equations are sparse in the space of possible functions; this assumption holds for many physical systems in an appropriate basis. In particular, we use sparse regression to determine the fewest terms in the dynamic governing equations required to accurately represent the data. This results in parsimonious models that balance accuracy with model complexity to avoid overfitting. We demonstrate the algorithm on a wide range of problems, from simple canonical systems, including linear and nonlinear oscillators and the chaotic Lorenz system, to the fluid vortex shedding behind an obstacle. The fluid example illustrates the ability of this method to discover the underlying dynamics of a system that took experts in the community nearly 30 years to resolve. We also show that this method generalizes to parameterized systems and systems that are time-varying or have external forcing. PMID:27035946

  1. Exact solutions of atmospheric (3+1)-dimensional nonlinear incompressible non-hydrostatic Boussinesq equations with viscosity

    NASA Astrophysics Data System (ADS)

    Liu, Ping; Zeng, Bao-Qing; Deng, Bo-Bo; Yang, Jian-Rong

    2015-08-01

    The symmetry reduction equations, similarity solutions, sub-groups and exact solutions of the (3+1)-dimensional nonlinear incompressible non-hydrostatic Boussinesq equations with viscosity (INHBV equations), which describe the atmospheric gravity waves, are researched in this paper. Calculation on symmetry shows that the equations are invariant under the Galilean transformations, scaling transformations, rotational transformations and space-time translations. Three types of symmetry reduction equations and similar solutions for the (3+1)-dimensional INHBV equations are proposed. Traveling wave solutions of the INHBV equations are demonstrated by means of symmetry method. The evolutions on the wind velocities and temperature perturbation are demonstrated by figures.

  2. Chirped solitary pulses for a nonic nonlinear Schrödinger equation on a continuous-wave background

    NASA Astrophysics Data System (ADS)

    Triki, Houria; Porsezian, K.; Choudhuri, Amitava; Dinda, P. Tchofo

    2016-06-01

    A class of derivative nonlinear Schrödinger equation with cubic-quintic-septic-nonic nonlinear terms describing the propagation of ultrashort optical pulses through a nonlinear medium with higher-order Kerr responses is investigated. An intensity-dependent chirp ansatz is adopted for solving the two coupled amplitude-phase nonlinear equations of the propagating wave. We find that the dynamics of field amplitude in this system is governed by a first-order nonlinear ordinary differential equation with a tenth-degree nonlinear term. We demonstrate that this system allows the propagation of a very rich variety of solitary waves (kink, dark, bright, and gray solitary pulses) which do not coexist in the conventional nonlinear systems that have appeared so far in the literature. The stability of the solitary wave solution under some violation on the parametric conditions is investigated. Moreover, we show that, unlike conventional systems, the nonlinear Schrödinger equation considered here meets the special requirements for the propagation of a chirped solitary wave on a continuous-wave background, involving a balance among group velocity dispersion, self-steepening, and higher-order nonlinearities of different nature.

  3. Effects of randomness, dissipation and interaction on solitons of the cubic nonlinear Schrodinger equation and related nonlinear wave models

    NASA Astrophysics Data System (ADS)

    Nguyen, Quan Minh

    2011-12-01

    We investigate the propagation of solitons of the perturbed nonlinear Schrodinger equation (NLSE) via asymptotic perturbation techniques and numerical simulations. The dissertation consists of several inter-related projects [22, 98, 103, 108, 109] that are focused on the effects of nonlinear processes and randomness on dynamics of pulses of light in optical waveguides. We particularly consider two of the most important nonlinear processes affecting pulse dynamics in multichannel optical waveguides: weak cubic loss and delayed Raman response. In the presence of weak cubic loss [98], we obtain the analytic expressions for the amplitude and frequency shifts in a single two-soliton collision and show that the impact of a fast three-soliton collision is given by the sum of the two-soliton interactions. Furthermore, we show that amplitude dynamics in an N-channel waveguide system is described by a Lotka-Volterra model for N competing species. We find the conditions on the time slot width and the soliton's equilibrium amplitude value under which the transmission is stable. The predictions of the reduced Lotka-Volterra model are confirmed by numerical solution of a coupled-NLSE model, which takes into account intra-pulse and inter-pulse effects due to cubic nonlinearity and cubic loss. These results uncover an interesting analogy between the dynamics of energy exchange in pulse collisions and population dynamics in Lotka-Volterra models. In the presence of delayed Raman response [103,108,109], we show that the dynamics of pulse amplitudes in an N-channel transmission system in differential phase shift keying (DPSK) scheme is described by an N-dimensional predator-prey model. We find the equilibrium states with non-zero amplitudes and prove their stability by obtaining the Lyapunov function. We then show that stable transmission can be achieved by a proper choice of the frequency profile of linear amplifier gain. We also investigate the impact of Raman self- and collsion

  4. Nonlinear inversion of the integral equation to estimate ocean wave spectra from HF radar

    NASA Astrophysics Data System (ADS)

    Hisaki, Yukiharu

    1996-01-01

    Since all ocean wave components contribute to the second-order scattering of a high-frequency radio wave by the sea surface, it is theoretically possible to estimate the ocean wave spectrum from first- and second-order scattering in the Doppler spectrum measured with an HF ocean radar. To extract the wave spectral information, however, it is necessary to solve a nonlinear integral equation. This paper describes in detail how to solve the nonlinear integral equation without linearization or approximation. We show that the problem of solving the nonlinear integral equation can be converted into a nonlinear optimization problem. An algorithm to find the optimal solution is described. Examples of the algorithm applied to simulated data and measured data are shown. The wave frequency spectrum can be estimated even if the Doppler spectrum is available in only a single direction. In this case, however, the solution of the two-dimensional wavenumber spectrum tends to converge to a spectrum that is symmetrical to the beam direction. Even if the wave spectrum is dominant in a single direction, the solution may give two peaks in the wavenumber spectrum. One of them is the true peak and the other is the mirror image of it with respect to the beam direction. This ambiguity can be avoided by using Doppler spectra measured in at least two different directions. Although there is still some room for improvement in the practical application of this method, it can be applied to estimate the wave directional spectrum up to a rather high frequency, or Bragg frequency.

  5. Modulational instability regions for coupled Ginzburg-Landau equations with higher order of nonlinearities

    NASA Astrophysics Data System (ADS)

    Zakeri, Gholam-Ali; Yomba, Emmanuel

    2015-06-01

    A generalized (2+1)-dimensional coupled cubic-quintic Ginzburg-Landau equation with higher-order nonlinearities is fully investigated for modulational instability regions. We obtained the constraints that allow the modulational instability (MI) procedure to transform the system under consideration into an analysis of the roots of a polynomial equation of the fourth degree. Because of the complexity of the dispersion relation and its dependence on many parameters, we study numerous examples that are presented graphically. A numerical simulation based on a split-step Fourier method is implemented on the above equation. In addition to the general case, we have considered some special cases that allow us to investigate the behavior of MI in different regions.

  6. On a deformation of the nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Arnaudon, A.

    2016-03-01

    We study a deformation of the nonlinear Schrödinger (NLS) equation recently derived in the context of deformation of hierarchies of integrable systems. Although this new equation has not been shown to be completely integrable, its solitary wave solutions exhibit typical soliton behaviour, including near elastic collisions. We will first focus on standing wave solutions which can be smooth or peaked, then with the help of numerical simulations we will study solitary waves, their interactions and finally rogue waves in the modulational instability regime. Interestingly, the structure of the solution during the collision of solitary waves or during the rogue wave events is sharper and has larger amplitudes than in the classical NLS equation.

  7. Modulational instability regions for coupled Ginzburg-Landau equations with higher order of nonlinearities.

    PubMed

    Zakeri, Gholam-Ali; Yomba, Emmanuel

    2015-06-01

    A generalized (2+1)-dimensional coupled cubic-quintic Ginzburg-Landau equation with higher-order nonlinearities is fully investigated for modulational instability regions. We obtained the constraints that allow the modulational instability (MI) procedure to transform the system under consideration into an analysis of the roots of a polynomial equation of the fourth degree. Because of the complexity of the dispersion relation and its dependence on many parameters, we study numerous examples that are presented graphically. A numerical simulation based on a split-step Fourier method is implemented on the above equation. In addition to the general case, we have considered some special cases that allow us to investigate the behavior of MI in different regions. PMID:26172769

  8. Numerical solution of the nonlinear Schrödinger equation using smoothed-particle hydrodynamics.

    PubMed

    Mocz, Philip; Succi, Sauro

    2015-05-01

    We formulate a smoothed-particle hydrodynamics numerical method, traditionally used for the Euler equations for fluid dynamics in the context of astrophysical simulations, to solve the nonlinear Schrödinger equation in the Madelung formulation. The probability density of the wave function is discretized into moving particles, whose properties are smoothed by a kernel function. The traditional fluid pressure is replaced by a quantum pressure tensor, for which a robust discretization is found. We demonstrate our numerical method on a variety of numerical test problems involving the simple harmonic oscillator, soliton-soliton collision, Bose-Einstein condensates, collapsing singularities, and dark matter halos governed by the Gross-Pitaevskii-Poisson equation. Our method is conservative, applicable to unbounded domains, and is automatically adaptive in its resolution, making it well suited to study problems with collapsing solutions. PMID:26066276

  9. Bifurcation of Nonlinear Bloch Waves from the Spectrum in the Gross-Pitaevskii Equation

    NASA Astrophysics Data System (ADS)

    Dohnal, Tomáš; Uecker, Hannes

    2016-06-01

    We rigorously analyze the bifurcation of stationary so-called nonlinear Bloch waves (NLBs) from the spectrum in the Gross-Pitaevskii (GP) equation with a periodic potential, in arbitrary space dimensions. These are solutions which can be expressed as finite sums of quasiperiodic functions and which in a formal asymptotic expansion are obtained from solutions of the so-called algebraic coupled mode equations. Here we justify this expansion by proving the existence of NLBs and estimating the error of the formal asymptotics. The analysis is illustrated by numerical bifurcation diagrams, mostly in 2D. In addition, we illustrate some relations of NLBs to other classes of solutions of the GP equation, in particular to so-called out-of-gap solitons and truncated NLBs, and present some numerical experiments concerning the stability of these solutions.

  10. Numerical solution of the nonlinear Schrödinger equation using smoothed-particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Mocz, Philip; Succi, Sauro

    2015-05-01

    We formulate a smoothed-particle hydrodynamics numerical method, traditionally used for the Euler equations for fluid dynamics in the context of astrophysical simulations, to solve the nonlinear Schrödinger equation in the Madelung formulation. The probability density of the wave function is discretized into moving particles, whose properties are smoothed by a kernel function. The traditional fluid pressure is replaced by a quantum pressure tensor, for which a robust discretization is found. We demonstrate our numerical method on a variety of numerical test problems involving the simple harmonic oscillator, soliton-soliton collision, Bose-Einstein condensates, collapsing singularities, and dark matter halos governed by the Gross-Pitaevskii-Poisson equation. Our method is conservative, applicable to unbounded domains, and is automatically adaptive in its resolution, making it well suited to study problems with collapsing solutions.

  11. Asymptotic reductions and solitons of nonlocal nonlinear Schrödinger equations

    NASA Astrophysics Data System (ADS)

    Horikis, Theodoros P.; Frantzeskakis, Dimitrios J.

    2016-05-01

    Asymptotic reductions of a defocusing nonlocal nonlinear Schrödinger model in (3 + 1)-dimensions, in both Cartesian and cylindrical geometry, are presented. First, at an intermediate stage, a Boussinesq equation is derived, and then its far-field, in the form of a variety of Kadomtsev–Petviashvilli (KP) equations for right- and left-going waves, is found. KP models include versions of the KP-I and KP-II equations, in Cartesian and cylindrical geometry. Solitary waves solutions, planar or ring-shaped, and of dark or anti-dark type, are also predicted to occur. Their nature and stability is determined by a parameter defined by the physical parameters of the original nonlocal system. It is thus found that (dark) anti-dark solitary waves are only supported by a weak (strong) nonlocality, and are unstable (stable) in higher-dimensions. Our analytical predictions are corroborated by direct numerical simulations.

  12. Filtering of non-linear instabilities. [from finite difference solution of fluid dynamics equations

    NASA Technical Reports Server (NTRS)

    Khosla, P. K.; Rubin, S. G.

    1979-01-01

    For Courant numbers larger than one and cell Reynolds numbers larger than two, oscillations and in some cases instabilities are typically found with implicit numerical solutions of the fluid dynamics equations. This behavior has sometimes been associated with the loss of diagonal dominance of the coefficient matrix. It is shown here that these problems can in fact be related to the choice of the spatial differences, with the resulting instability related to aliasing or nonlinear interaction. Appropriate 'filtering' can reduce the intensity of these oscillations and in some cases possibly eliminate the instability. These filtering procedures are equivalent to a weighted average of conservation and non-conservation differencing. The entire spectrum of filtered equations retains a three-point character as well as second-order spatial accuracy. Burgers equation has been considered as a model. Several filters are examined in detail, and smooth solutions have been obtained for extremely large cell Reynolds numbers.

  13. Spatio-temporal dynamics induced by competing instabilities in two asymmetrically coupled nonlinear evolution equations

    SciTech Connect

    Schüler, D.; Alonso, S.; Bär, M.; Torcini, A.

    2014-12-15

    Pattern formation often occurs in spatially extended physical, biological, and chemical systems due to an instability of the homogeneous steady state. The type of the instability usually prescribes the resulting spatio-temporal patterns and their characteristic length scales. However, patterns resulting from the simultaneous occurrence of instabilities cannot be expected to be simple superposition of the patterns associated with the considered instabilities. To address this issue, we design two simple models composed by two asymmetrically coupled equations of non-conserved (Swift-Hohenberg equations) or conserved (Cahn-Hilliard equations) order parameters with different characteristic wave lengths. The patterns arising in these systems range from coexisting static patterns of different wavelengths to traveling waves. A linear stability analysis allows to derive a two parameter phase diagram for the studied models, in particular, revealing for the Swift-Hohenberg equations, a co-dimension two bifurcation point of Turing and wave instability and a region of coexistence of stationary and traveling patterns. The nonlinear dynamics of the coupled evolution equations is investigated by performing accurate numerical simulations. These reveal more complex patterns, ranging from traveling waves with embedded Turing patterns domains to spatio-temporal chaos, and a wide hysteretic region, where waves or Turing patterns coexist. For the coupled Cahn-Hilliard equations the presence of a weak coupling is sufficient to arrest the coarsening process and to lead to the emergence of purely periodic patterns. The final states are characterized by domains with a characteristic length, which diverges logarithmically with the coupling amplitude.

  14. Unsteady Solution of Non-Linear Differential Equations Using Walsh Function Series

    NASA Technical Reports Server (NTRS)

    Gnoffo, Peter A.

    2015-01-01

    Walsh functions form an orthonormal basis set consisting of square waves. The discontinuous nature of square waves make the system well suited for representing functions with discontinuities. The product of any two Walsh functions is another Walsh function - a feature that can radically change an algorithm for solving non-linear partial differential equations (PDEs). The solution algorithm of non-linear differential equations using Walsh function series is unique in that integrals and derivatives may be computed using simple matrix multiplication of series representations of functions. Solutions to PDEs are derived as functions of wave component amplitude. Three sample problems are presented to illustrate the Walsh function series approach to solving unsteady PDEs. These include an advection equation, a Burgers equation, and a Riemann problem. The sample problems demonstrate the use of the Walsh function solution algorithms, exploiting Fast Walsh Transforms in multi-dimensions (O(Nlog(N))). Details of a Fast Walsh Reciprocal, defined here for the first time, enable inversion of aWalsh Symmetric Matrix in O(Nlog(N)) operations. Walsh functions have been derived using a fractal recursion algorithm and these fractal patterns are observed in the progression of pairs of wave number amplitudes in the solutions. These patterns are most easily observed in a remapping defined as a fractal fingerprint (FFP). A prolongation of existing solutions to the next highest order exploits these patterns. The algorithms presented here are considered a work in progress that provide new alternatives and new insights into the solution of non-linear PDEs.

  15. Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes II: Size Effects on Ionic Distributions and Diffusion-Reaction Rates

    PubMed Central

    Lu, Benzhuo; Zhou, Y.C.

    2011-01-01

    The effects of finite particle size on electrostatics, density profiles, and diffusion have been a long existing topic in the study of ionic solution. The previous size-modified Poisson-Boltzmann and Poisson-Nernst-Planck models are revisited in this article. In contrast to many previous works that can only treat particle species with a single uniform size or two sizes, we generalize the Borukhov model to obtain a size-modified Poisson-Nernst-Planck (SMPNP) model that is able to treat nonuniform particle sizes. The numerical tractability of the model is demonstrated as well. The main contributions of this study are as follows. 1), We show that an (arbitrarily) size-modified PB model is indeed implied by the SMPNP equations under certain boundary/interface conditions, and can be reproduced through numerical solutions of the SMPNP. 2), The size effects in the SMPNP effectively reduce the densities of highly concentrated counterions around the biomolecule. 3), The SMPNP is applied to the diffusion-reaction process for the first time, to our knowledge. In the case of low substrate density near the enzyme reactive site, it is observed that the rate coefficients predicted by SMPNP model are considerably larger than those by the PNP model, suggesting both ions and substrates are subject to finite size effects. 4), An accurate finite element method and a convergent Gummel iteration are developed for the numerical solution of the completely coupled nonlinear system of SMPNP equations. PMID:21575582

  16. Continuations of the nonlinear Schrödinger equation beyond the singularity

    NASA Astrophysics Data System (ADS)

    Fibich, G.; Klein, M.

    2011-07-01

    We present four continuations of the critical nonlinear Schrödinger equation (NLS) beyond the singularity: (1) a sub-threshold power continuation, (2) a shrinking-hole continuation for ring-type solutions, (3) a vanishing nonlinear-damping continuation and (4) a complex Ginzburg-Landau (CGL) continuation. Using asymptotic analysis, we explicitly calculate the limiting solutions beyond the singularity. These calculations show that for generic initial data that lead to a loglog collapse, the sub-threshold power limit is a Bourgain-Wang solution, both before and after the singularity, and the vanishing nonlinear-damping and CGL limits are a loglog solution before the singularity, and have an infinite-velocity expanding core after the singularity. Our results suggest that all NLS continuations share the universal feature that after the singularity time Tc, the phase of the singular core is only determined up to multiplication by eiθ. As a result, interactions between post-collapse beams (filaments) become chaotic. We also show that when the continuation model leads to a point singularity and preserves the NLS invariance under the transformation t → -t and ψ → ψ*, the singular core of the weak solution is symmetric with respect to Tc. Therefore, the sub-threshold power and the shrinking-hole continuations are symmetric with respect to Tc, but continuations which are based on perturbations of the NLS equation are generically asymmetric.

  17. Soliton synchronization in the focusing nonlinear Schrödinger equation

    NASA Astrophysics Data System (ADS)

    Sun, Yu-Hao

    2016-05-01

    The focusing nonlinear Schrödinger equation (NLSE) describes propagation of quasimonochromatic waves in weakly nonlinear media. The aim of this study is to determine conditions of soliton synchronization in the NLSE in terms of the solitons' position and phase parameters. For this purpose, the concept of asymptotic middle states of solitons in the NLSE is first introduced. With soliton solutions of the NLSE, it is shown that soliton synchronization can be achieved by synchronizing the asymptotic middle states of the solitons, and conditions of soliton synchronization in terms of the solitons' position and phase parameters are given. Although the interaction of the solitons is nonlinear, the conditions are linear equations. Then, aided with the synchronization conditions, simple initial conditions are presented for producing synchronized interaction of solitons without the need to obtain analytic expressions for the synchronized interaction of the solitons. The initial conditions are summations of fundamental solitons with no mutual overlap, so they might be convenient to implement in applicative contexts.

  18. Generalized and functional separable solutions to nonlinear delay Klein-Gordon equations

    NASA Astrophysics Data System (ADS)

    Polyanin, Andrei D.; Zhurov, Alexei I.

    2014-08-01

    We describe a number of generalized separable, functional separable, and some other exact solutions to nonlinear delay Klein-Gordon equations of the formutt=kuxx+F(u,w), where u=u(x,t) and w=u(x,t-τ), with τ denoting the delay time. The generalized separable solutions are sought in the form u=∑n=1NΦn(x)Ψn(t), where the functions Φn(x) and Ψn(t) are to be determined subsequently. Most of the equations considered contain one or two arbitrary functions of a single argument or one arbitrary function of two arguments of special form. We present a substantial number of new exact solutions, including periodic and antiperiodic ones, as well as composite solutions resulting from a nonlinear superposition of generalized separable and traveling wave solutions. All solutions involve free parameters (in some cases, infinitely many) and so can be suitable for solving certain problems and testing approximate analytical and numerical methods for nonlinear delay PDEs.

  19. Growth of Sobolev Norms in the Cubic Nonlinear Schrödinger Equation with a Convolution Potential

    NASA Astrophysics Data System (ADS)

    Guardia, Marcel

    2014-07-01

    Fix s > 1. Colliander et al. proved in (Invent Math 181:39-113, 2010) the existence of solutions of the cubic defocusing nonlinear Schrödinger equation in the two torus whose s-Sobolev norm undergoes arbitrarily large growth as time evolves. In this paper we generalize their result to the cubic defocusing nonlinear Schrödinger equation with a convolution potential. Moreover, we show that the speed of growth is the same as the one obtained for the cubic defocusing nonlinear Schrödinger equation in Guardia and Kaloshin (Growth of Sobolev norms in the cubic defocusing Nonlinear Schrödinger Equation. To appear in the Journal of the European Mathematical Society, 2012).

  20. On the complex structures of the Biswas-Milovic equation for power, parabolic and dual parabolic law nonlinearities

    NASA Astrophysics Data System (ADS)

    Manafian, Jalil

    2015-12-01

    We apply the Exp-function method (EFM) to the Biswas-Milovic equation and derive the exact solutions. This paper studies the Biswas-Milovic equation with power law, parabolic law and dual parabolic law nonlinearities by the aid of the Exp-function method. The obtained solutions not only constitute a novel analytical viewpoint in nonlinear complex phenomena, but they also form a new stand alone basis from which physical applications in this arena can be comprehended further, and, moreover, investigated. Furthermore, to concretely enrich this research production, we explain all cases, namely m=1 and m≥ 2. This method is developed for searching exact travelling-wave solutions of nonlinear partial differential equations. It is shown that this methods, with the help of symbolic computation, provides a straightforward and powerful mathematical tool for solving nonlinear partial differential equations in mathematical physics.