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Sample records for occurrence pathomorphology breed

  1. Uncommon breeding birds in North Dakota: Population estimates and frequencies of occurrence

    USGS Publications Warehouse

    Igl, L.D.; Johnson, D.H.; Kantrud, H.A.

    1999-01-01

    Breeding bird populations were surveyed on 128 randomly selected quarter-sections throughout North Dakota in 1967, 1992, and 1993. Population estimates and frequencies of occurrence are reported for 92 uncommon breeding bird species with statewide frequencies of less than 10%.

  2. Swiss Canine Cancer Registry 1955-2008: Occurrence of the Most Common Tumour Diagnoses and Influence of Age, Breed, Body Size, Sex and Neutering Status on Tumour Development.

    PubMed

    Grüntzig, K; Graf, R; Boo, G; Guscetti, F; Hässig, M; Axhausen, K W; Fabrikant, S; Welle, M; Meier, D; Folkers, G; Pospischil, A

    2016-01-01

    This study is based on the Swiss Canine Cancer Registry, comprising 121,963 diagnostic records of dogs compiled between 1955 and 2008, in which 63,214 (51.83%) animals were diagnosed with tumour lesions through microscopical investigation. Adenoma/adenocarcinoma (n = 12,293, 18.09%) was the most frequent tumour diagnosis. Other common tumour diagnoses were: mast cell tumour (n = 4,415, 6.50%), lymphoma (n = 2,955, 4.35%), melanocytic tumours (n = 2,466, 3.63%), fibroma/fibrosarcoma (n = 2,309, 3.40%), haemangioma/haemangiosarcoma (n = 1,904, 2.80%), squamous cell carcinoma (n = 1,324, 1.95%) and osteoma/osteosarcoma (n = 842, 1.24%). The relative occurrence over time and the most common body locations of those tumour diagnoses are presented. Analyses of the influence of age, breed, body size, sex and neutering status on tumour development were carried out using multiple logistic regression. In certain breeds/breed categories the odds ratios (ORs) for particular tumours were outstandingly high: the boxer had higher ORs for mast cell tumour and haemangioma/haemangiosarcoma, as did the shepherd group for haemangioma/haemangiosarcoma, the schnauzer for squamous cell carcinoma and the rottweiler for osteoma/osteosarcoma. In small dogs, the risk of developing mammary tumours was three times higher than in large dogs. However, small dogs were less likely to be affected by many other tumour types (e.g. tumours of the skeletal system). Examination of the influence of sex and neutering status on tumour prevalence showed that the results depend on the examination method. In all sampling groups the risk for female dogs of developing adenoma/adenocarcinoma was higher than for male dogs. Females had a lower risk of developing haemangioma/haemangiosarcoma and squamous cell carcinoma than males. Neutered animals were at higher risk of developing specific tumours outside the genital organs than intact animals. The sample size allows detailed insight into the

  3. Pathomorphological and microbiological studies in sheep with special emphasis on gastrointestinal tract disorders

    PubMed Central

    Kumar, Sarvan; Jakhar, K. K.; Nehra, Vikas; Pal, Madan

    2015-01-01

    Aim: The present study was envisaged to elucidate the pathomorphological and microbiological aspects of gastrointestinal tract (GIT) disorders of sheep/lambs. Materials and Methods: Samples for research were collected from 12 sheep died with a history of GIT disorders which were brought for post-mortem examination to the Department of Veterinary Pathology, Lala Lajpat Rai University of Veterinary and Animal Sciences, Hisar, for pathomorphological and microbiological examination. Results: Gross pathological changes in various organs noticed were abomasitis, congestion and hemorrhages in intestine; necrotic foci on liver surface; enlarged, hard, and indurated mesenteric lymph nodes, hydropericardium, congestion, hemorrhages and consolidation of lungs and congestion and soft kidneys as the major change. On histopathological examination, there were abomasitis with leukocyte infiltration, enteritis with desquamation of mucosal epithelium and goblet cell hyperplasia, lymphadenitis with depletion of lymphocytes in the germinal center of lymphoid follicle, and splenitis with depletion of lymphocytes in the white pulp. In the liver congestion, degenerative changes in hepatocytes including cloudy swelling, fatty changes, congestion in sinusoids, and dilatation of sinusoids leading to atrophy of hepatocytes. Lungs evidenced edema, congestion, emphysema, serous inflammation, thickening of interlobular septa, fibrinous pleuritis, and peribronchiolar lymphoid follicle formation. Heart revealed sarcocystosis, fibrinous pericarditis, and hyalinization of the myocardium. In kidneys, congestion, focal interstitial nephritis, hyaline degeneration, and coagulative necrosis were seen. For microbiological aspects; cultural isolation was done from samples of liver, abomasum, mesenteric lymph nodes, spleen, heart blood, lungs, and kidneys from the carcasses of sheep/lambs. Escherichia coli was the only bacterium isolated during present studies. E. coli isolates from different tissues of

  4. Pathomorphology of myocardial circulation: comparative study in increased left or right ventricle afterload.

    PubMed

    Tverskaya, M S; Sukhoparova, V V; Karpova, V V; Raksha, A P; Kadyrova, M K; Abdulkerimova, N Z; Bobrova, N A

    2008-03-01

    Comparative study of pathomorphology of myocardial circulation under conditions of increased afterload of the left or right ventricles showed similar changes. All compartments of the coronary bed were plethoric, capillary blood stasis and perivascular edema, more pronounced in arterial vessels, were detected in both cases. These changes equally involved both ventricles and the ventricular septum. Significant differences consisted in local increase in the density of functioning capillaries. The increase was the maximum in hemodynamically overloaded ventricle and ventricular septum, presumably due to increase of their contractile activity. The density of functioning capillaries in the intact (vs. pressure overloaded) ventricle also increased, but to a lesser degree, which could be due to systemic neurohumoral effects. If increased afterload was complicated by the development of heart failure, circulatory disorders in the myocardium progressed. Significant increase in the density of functioning capillaries in all cardiac compartments indicated decreased vascular tone and exhaustion of coronary reserve. This was paralleled by a sharp arterial plethora in case of increased afterload of the left ventricle and sharp blood stasis in the microcirculatory bed in case of increased right ventricle afterload. Reduction of effective perfusion pressure in the presence of coronary dystonia can cause coronary insufficiency and myocardial ischemia in case of increased right ventricle afterload. PMID:19039949

  5. Occurrence of anti-Toxoplasma gondii antibodies and parasite DNA in raw milk of sheep and goats of local breeds reared in Northeastern Brazil.

    PubMed

    da Silva, José Givanildo; Alves, Bruno Henrique L S; Melo, Renata Pimentel B; Kim, Pomy Cássia P; Souza Neto, Orestes L; Bezerra, Mauro José G; Sá, Silvio G; Mota, Rinaldo A

    2015-02-01

    The aim of the present study was to detect Toxoplasma gondii DNA in raw milk samples of goats and sheep of local breeds from the semi-arid region of the states of Pernambuco and Paraíba, Northeastern Brazil. Serum and milk samples were collected from 243 animals (186 goats and 57 sheep). The Indirect fluorescent antibody test (IFAT) was used to search for anti-T. gondii IgG antibodies with a cutoff of 64. Subsequently, the raw milk samples were subjected to DNA extraction and PCR to detect DNA of T. gondii. The IFAT results showed a 6.58% (16/243) positivity when all the samples were considered and a positivity of 15.78% (9/57) and 3.76% (7/186) for goats and sheep samples, respectively. The PCR assay detected T. gondii DNA in 2.06% (5/243) of all the samples tested. All the PCR positive samples were from goats. This result shows the importance of adopting measures of flock's sanitary management and avoiding the consumption of raw milk may constitute a potential risk to the health of milk consumers in this region. PMID:25438258

  6. Apricot Breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Apricot orchard area and fruit production are increasing worldwide. Breeding programs engage in apricot development to provide new varieties to meet needs of producers and consumers. Over the last 20 years, breeders have used new techniques to assist in variety development and to increase breeding...

  7. Physiological breeding.

    PubMed

    Reynolds, Matthew; Langridge, Peter

    2016-06-01

    Physiological breeding crosses parents with different complex but complementary traits to achieve cumulative gene action for yield, while selecting progeny using remote sensing, possibly in combination with genomic selection. Physiological approaches have already demonstrated significant genetic gains in Australia and several developing countries of the International Wheat Improvement Network. The techniques involved (see Graphical Abstract) also provide platforms for research and refinement of breeding methodologies. Recent examples of these include screening genetic resources for novel expression of Calvin cycle enzymes, identification of common genetic bases for heat and drought adaptation, and genetic dissection of trade-offs among yield components. Such information, combined with results from physiological crosses designed to test novel trait combinations, lead to more precise breeding strategies, and feed models of genotype-by-environment interaction to help build new plant types and experimental environments for future climates. PMID:27161822

  8. Environmental occurrences

    SciTech Connect

    Black, D.G.

    1995-06-01

    This section of the 1994 Hanford Site Environmental Report summarizes the onsite and offsite releases of radioactive and regulated materials. The specific agencies notified of the releases depended on the type, amount, and location of the individual occurrences. The more significant of these off-normal environmental occurrences are summarized in this section.

  9. Breeding Horticultural Plants

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant breeding involves selection of plants with combinations of improved traits that are inherited in a predictable manner. Collecting, understanding, and incorporating genetic variation into a horticultural breeding program are critical to success. Clearly defined goals help plant breeders choose ...

  10. Blackberry Breeding and Genetics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant Breeding Reviews has been published since the early 1980s and each edition presents a thorough review of the state of the are on breeding and genetics of specific crop plant. The extensive chapter on blackberry breeding and genetics is organized as follows: INTRODUCTION (Origin and Speciation...

  11. Chickpea Breeding and Management

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This book presents the current status of chickpea breeding and management by experts from around the world. It thoroughly covers a wide array of subject on chickpea genetics and breeding ranging from cytogenetics, wild relatives and biodiversity, conventional and modern breeding techniques and achi...

  12. Sexual Reproduction and Breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In the second edition of Plant Propagation Concepts and Laboratory Exercises, we have combined the first edition chapters 36: Sexual Reproduction in Angiosperms and 37: Breeding Horticultural Plants into the present single chapter Sexual Reproduction and Breeding. These topics are so closely relate...

  13. Blackberry breeding and genetics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Blackberry (Rubus L. subgenus Rubus Watson) improvement has made substantial progress with over 400 cultivars named originating from wild selections to many releases from breeding efforts. Public breeding has been ongoing for over 100 years. The result of these improvements is commercial production ...

  14. Can non-breeding be a cost of breeding dispersal?

    USGS Publications Warehouse

    Danchin, E.; Cam, E.

    2002-01-01

    Breeding habitat selection and dispersal are crucial processes that affect many components of fitness. Breeding dispersal entails costs, one of which has been neglected: dispersing animals may miss breeding opportunities because breeding dispersal requires finding a new nesting site and mate, two time- and energy-consuming activities. Dispersers are expected to be prone to non-breeding. We used the kittiwake (Rissa tridactyla) to test whether breeding dispersal influences breeding probability. Breeding probability was associated with dispersal, in that both were negatively influenced by private information (previous individual reproductive success) and public information (average reproductive success of conspecifics) about patch quality. Furthermore, the probability of skipping breeding was 1.7 times higher in birds that settled in a new patch relative to those that remained on the same patch. Finally, non-breeders that resumed breeding were 4.4 times more likely to disperse than birds that bred in successive years. Although private information may influence breeding probability directly, the link between breeding probability and public information may be indirect, through the influence of public information on breeding dispersal, non-breeding thus being a cost of dispersal. These results support the hypothesis that dispersal may result in not being able to breed. More generally, non-breeding (which can be interpreted as an extreme form of breeding failure) may reveal costs of various previous activities. Because monitoring the non-breeding portion of a population is difficult, non-breeders have been neglected in many studies of reproduction trade-offs.

  15. Tracking multi-generational colonization of the breeding grounds by monarch butterflies in eastern North America

    PubMed Central

    Flockhart, D. T. Tyler; Wassenaar, Leonard I.; Martin, Tara G.; Hobson, Keith A.; Wunder, Michael B.; Norris, D. Ryan

    2013-01-01

    Insect migration may involve movements over multiple breeding generations at continental scales, resulting in formidable challenges to their conservation and management. Using distribution models generated from citizen scientist occurrence data and stable-carbon and -hydrogen isotope measurements, we tracked multi-generational colonization of the breeding grounds of monarch butterflies (Danaus plexippus) in eastern North America. We found that monarch breeding occurrence was best modelled with geographical and climatic variables resulting in an annual breeding distribution of greater than 12 million km2 that encompassed 99% occurrence probability. Combining occurrence models with stable isotope measurements to estimate natal origin, we show that butterflies which overwintered in Mexico came from a wide breeding distribution, including southern portions of the range. There was a clear northward progression of monarchs over successive generations from May until August when reproductive butterflies began to change direction and moved south. Fifth-generation individuals breeding in Texas in the late summer/autumn tended to originate from northern breeding areas rather than regions further south. Although the Midwest was the most productive area during the breeding season, monarchs that re-colonized the Midwest were produced largely in Texas, suggesting that conserving breeding habitat in the Midwest alone is insufficient to ensure long-term persistence of the monarch butterfly population in eastern North America. PMID:23926146

  16. Tracking multi-generational colonization of the breeding grounds by monarch butterflies in eastern North America.

    PubMed

    Flockhart, D T Tyler; Wassenaar, Leonard I; Martin, Tara G; Hobson, Keith A; Wunder, Michael B; Norris, D Ryan

    2013-10-01

    Insect migration may involve movements over multiple breeding generations at continental scales, resulting in formidable challenges to their conservation and management. Using distribution models generated from citizen scientist occurrence data and stable-carbon and -hydrogen isotope measurements, we tracked multi-generational colonization of the breeding grounds of monarch butterflies (Danaus plexippus) in eastern North America. We found that monarch breeding occurrence was best modelled with geographical and climatic variables resulting in an annual breeding distribution of greater than 12 million km(2) that encompassed 99% occurrence probability. Combining occurrence models with stable isotope measurements to estimate natal origin, we show that butterflies which overwintered in Mexico came from a wide breeding distribution, including southern portions of the range. There was a clear northward progression of monarchs over successive generations from May until August when reproductive butterflies began to change direction and moved south. Fifth-generation individuals breeding in Texas in the late summer/autumn tended to originate from northern breeding areas rather than regions further south. Although the Midwest was the most productive area during the breeding season, monarchs that re-colonized the Midwest were produced largely in Texas, suggesting that conserving breeding habitat in the Midwest alone is insufficient to ensure long-term persistence of the monarch butterfly population in eastern North America. PMID:23926146

  17. Welfare in horse breeding

    PubMed Central

    Campbell, M. L. H.; Sandøe, P.

    2015-01-01

    Welfare problems related to the way horses are bred, whether by coitus or by the application of artificial reproduction techniques (ARTs), have been given no discrete consideration within the academic literature. This paper reviews the existing knowledge base about welfare issues in horse breeding and identifies areas in which data is lacking. We suggest that all methods of horse breeding are associated with potential welfare problems, but also that the judicious use of ARTs can sometimes help to address those problems. We discuss how negative welfare effects could be identified and limited and how positive welfare effects associated with breeding might be maximised. Further studies are needed to establish an evidence base about how stressful or painful various breeding procedures are for the animals involved, and what the lifetime welfare implications of ARTs are for future animal generations. PMID:25908746

  18. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and...

  19. Assisted Breeding in Sugar Beet

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Molecular insight and methods applied to plant breeding and germplasm enhancement is the goal of assisted breeding, also known as marker assisted breeding, marker assisted selection, molecular plant breeding, or genome-wide selection, among others. The basic idea is that most, if not all, heritable ...

  20. Breed distribution of the nt230(del4) MDR1 mutation in dogs.

    PubMed

    Gramer, Irina; Leidolf, Regina; Döring, Barbara; Klintzsch, Stefanie; Krämer, Eva-Maria; Yalcin, Ebru; Petzinger, Ernst; Geyer, Joachim

    2011-07-01

    A 4-bp deletion mutation associated with multiple drug sensitivity exists in the canine multidrug resistance (MDR1) gene. This mutation has been detected in more than 10 purebred dog breeds as well as in mixed breed dogs. To evaluate the breed distribution of this mutation in Germany, 7378 dogs were screened, including 6999 purebred and 379 mixed breed dogs. The study included dog breeds that show close genetic relationship or share breeding history with one of the predisposed breeds but in which the occurrence of the MDR1 mutation has not been reported. The breeds comprised Bearded Collies, Anatolian Shepherd Dog, Greyhound, Belgian Tervuren, Kelpie, Borzoi, Australian Cattle Dog and the Irish Wolfhound. The MDR1 mutation was not detected is any of these breeds, although it was found as expected in the Collie, Longhaired Whippet, Shetland Sheepdog, Miniature Australian Shepherd, Australian Shepherd, Wäller, White Swiss Shepherd, Old English Sheepdog and Border Collie with varying allelic frequencies for the mutant MDR1 allele of 59%, 45%, 30%, 24%, 22%, 17%, 14%, 4% and 1%, respectively. Allelic frequencies of 8% and 2% were determined in herding breed mixes and unclassified mixed breeds, respectively. Because of its widespread breed distribution and occurrence in many mixed breed dogs, it is difficult for veterinarians and dog owners to recognise whether MDR1-related drug sensitivity is relevant for an individual animal. This study provides a comprehensive overview of all affected dog breeds and many dog breeds that are probably unaffected on the basis of ∼15,000 worldwide MDR1 genotyping data. PMID:20655253

  1. 1980 breeding bird censuses

    SciTech Connect

    Raynor, G.S.

    1980-09-01

    As part of a program to characterize the plant and animal life of the Laboratory site and the surrounding region, the two breeding bird censuses originated in 1977 were continued in 1980. Coverage was below that of previous years due to illness and travel of some participants, but 11 trips were made to the BNL plot and 8 to the Westhampton plot. Each was censused by separate teams of three volunteer observers. The number of breeding species and number of territorial males on the BNL plot have progressively declined since 1977 but little change has taken place in either number of territories or species composition on the Westhampton plot.

  2. Breeding Cold Hardy Begonias

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hardy begonia cultivars have potential as a new crop for Southern nurseries. Current begonia breeding efforts are focused on sections Begonia and Pritzelia. Diverse begonia germplasm has been collected to study fertility and hardiness.To date cold hardy germplasm which has produced viable seeds inc...

  3. Hop Cultivars and Breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pest management decision making in hops varies among cultivars. Historically, the primary objective of hop breeding programs has been to increase the yield or characteristics associated with either bittering (high alpha-acids) or aroma (unique volatile oil profiles) cultivars. Other factors consid...

  4. Red Clover Breeding Progress

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Red clover (Trifolium pratense L.) is an important forage legume grown on approximately 4 million hectares worldwide. It has a long and varied history in agriculture. Active breeding efforts began at the end of the 19th century. Since this time significant improvement in red clover cultivar for a...

  5. Raspberry Breeding and Genetics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter describes the origin, speciation, and history of improvement of the raspberries, Rubus section idaeobatus. The world industry in North America, Australasia, China, Europe, Eastern Europe, Africa, and South America and the breeding objectives of programs in those areas are discussed. Ger...

  6. Warmer winters reduce frog fecundity and shift breeding phenology, which consequently alters larval development and metamorphic timing.

    PubMed

    Benard, Michael F

    2015-03-01

    One widely documented phenological response to climate change is the earlier occurrence of spring-breeding events. While such climate change-driven shifts in phenology are common, their consequences for individuals and populations have rarely been investigated. I addressed this gap in our knowledge by using a multi-year observational study of six wood frog (Rana sylvatica) populations near the southern edge of their range. I tested first if winter temperature or precipitation affected the date of breeding and female fecundity, and second if timing of breeding affected subsequent larval development rate, mass at metamorphosis, date of metamorphosis, and survival. Warmer winters were associated with earlier breeding but reduced female fecundity. Winter precipitation did not affect breeding date, but was positively associated with female fecundity. There was no association between earlier breeding and larval survival or mass at metamorphosis, but earlier breeding was associated with delayed larval development. The delay in larval development was explained through a counterintuitive correlation between breeding date and temperature during larval development. Warmer winters led to earlier breeding, which in turn was associated with cooler post-breeding temperatures that slowed larval development. The delay in larval development did not fully compensate for the earlier breeding, such that for every 2 days earlier that breeding took place, the average date of metamorphosis was 1 day earlier. Other studies have found that earlier metamorphosis is associated with increased postmetamorphic growth and survival, suggesting that earlier breeding has beneficial effects on wood frog populations. PMID:25263760

  7. Recent breeding history of dog breeds in Sweden: modest rates of inbreeding, extensive loss of genetic diversity and lack of correlation between inbreeding and health

    PubMed Central

    Jansson, M; Laikre, L

    2014-01-01

    One problem in modern dogs is a high occurrence of physical diseases, defects and disorders. Many breeds exhibit physical problems that affect individual dogs throughout life. A potential cause of these problems is inbreeding that is known to reduce the viability of individuals. We investigated the possible correlation between recent inbreeding and health problems in dogs and used studbook data from 26 breeds provided by the Swedish Kennel Club for this purpose. The pedigrees date back to the mid-20th century and comprise 5–10 generations and 1 000–50 000 individuals per pedigree over our study period of 1980–2010. We compared levels of inbreeding and loss of genetic variation measured in relation to the number of founding animals during this period in the investigated dog breeds that we classified as ‘healthy’ (11 breeds) or ‘unhealthy’ (15) based on statistics on the extent of veterinary care obtained from Sweden's four largest insurance companies for pets. We found extensive loss of genetic variation and moderate levels of recent inbreeding in all breeds examined, but no strong indication of a difference in these parameters between healthy versus unhealthy breeds over this period. Thus, recent breeding history with respect to rate of inbreeding does not appear to be a main cause of poor health in the investigated dog breeds in Sweden. We identified both strengths and weaknesses of the dog pedigree data important to consider in future work of monitoring and conserving genetic diversity of dog breeds. PMID:24289536

  8. Recent breeding history of dog breeds in Sweden: modest rates of inbreeding, extensive loss of genetic diversity and lack of correlation between inbreeding and health.

    PubMed

    Jansson, M; Laikre, L

    2014-04-01

    One problem in modern dogs is a high occurrence of physical diseases, defects and disorders. Many breeds exhibit physical problems that affect individual dogs throughout life. A potential cause of these problems is inbreeding that is known to reduce the viability of individuals. We investigated the possible correlation between recent inbreeding and health problems in dogs and used studbook data from 26 breeds provided by the Swedish Kennel Club for this purpose. The pedigrees date back to the mid-20th century and comprise 5-10 generations and 1 000-50 000 individuals per pedigree over our study period of 1980-2010. We compared levels of inbreeding and loss of genetic variation measured in relation to the number of founding animals during this period in the investigated dog breeds that we classified as 'healthy' (11 breeds) or 'unhealthy' (15) based on statistics on the extent of veterinary care obtained from Sweden's four largest insurance companies for pets. We found extensive loss of genetic variation and moderate levels of recent inbreeding in all breeds examined, but no strong indication of a difference in these parameters between healthy versus unhealthy breeds over this period. Thus, recent breeding history with respect to rate of inbreeding does not appear to be a main cause of poor health in the investigated dog breeds in Sweden. We identified both strengths and weaknesses of the dog pedigree data important to consider in future work of monitoring and conserving genetic diversity of dog breeds. PMID:24289536

  9. Familial occurrence of bovine dilated cardiomyopathy in Denmark.

    PubMed

    Leifsson, P S; Agerholm, J S

    2004-01-01

    Bovine dilated cardiomyopathy (BDCM) is a hereditary disease genetically related to the Canadian Holstein sire Montwick Red Apple Sovereign (MRAS). The occurrence of this disorder in the Red Danish Dairy breed, Holsteins, and Red Holsteins in Denmark is reported. Fourteen cases were diagnosed during a 13-year period. All suffered from congestive heart failure because of progressive myocardial fibrosis. Pedigree information was available in 12 cases revealing both maternal and paternal relationship to MRAS. Several sires were identified as carriers of BDCM. These sires originated from breeding lines used to upgrade Danish cattle populations. The findings indicate that BDCM is a potential health problem for Danish cattle. PMID:15533113

  10. Materials for breeding blankets

    SciTech Connect

    Mattas, R.F.; Billone, M.C.

    1995-09-01

    There are several candidate concepts for tritium breeding blankets that make use of a number of special materials. These materials can be classified as Primary Blanket Materials, which have the greatest influence in determining the overall design and performance, and Secondary Blanket Materials, which have key functions in the operation of the blanket but are less important in establishing the overall design and performance. The issues associated with the blanket materials are specified and several examples of materials performance are given. Critical data needs are identified.

  11. A multiscaled model of southwestern willow flycatcher breeding habitat

    USGS Publications Warehouse

    Hatten, J.R.; Paradzick, C.E.

    2003-01-01

    The southwestern willow flycatcher (SWFL; Empidonax traillii extimus) is an endangered songbird whose habitat has declined dramatically over the last century. Understanding habitat selection patterns and the ability to identify potential breeding areas for the SWFL is crucial to the management and conservation of this species. We developed a multiscaled model of SWTL breeding habitat with a Geographic Information System (GIS), survey data, GIS variables, and multiple logistic regressions. We obtained presence and absence survey data from a riverine ecosystem and a reservoir delta in south-central Arizona, USA, in 1999. We extracted the GIS variables from satellite imagery and digital elevation models to characterize vegetation and floodplain within the project area. We used multiple logistic regressions within a cell-based (30 X 30 m) modeling environment to (1) determine associations between GIS variables and breeding-site occurrence at different spatial scales (0.09-72 ha), and (2) construct a predictive model. Our best model explained 54% of the variability in breeding-site occurrence with the following variables: vegetation density at the site (0.09 ha), proportion of dense vegetation and variability in vegetation density within a 4.5-ha neighborhood, and amount of floodplain or flat terrain within a 41-ha neighborhood. The density of breeding sites was highest in areas that the model predicted to be most suitable within the project area and at an external test site 200 km away. Conservation efforts must focus on protecting not only occupied patches, but also surrounding riparian forests and floodplain to ensure long-term viability of SWTL. We will use the multiscaled model to map SWTL breeding habitat in Arizona, prioritize future survey effort, and examine changes in habitat abundance and quality over time.

  12. Analysis of co-occurrence networks with clique occurrence information

    NASA Astrophysics Data System (ADS)

    Shen, Bin; Li, Yixiao

    2014-12-01

    Most of co-occurrence networks only record co-occurrence relationships between two entities, and ignore the weights of co-occurrence cliques whose size is bigger than two. However, this ignored information may help us to gain insight into the co-occurrence phenomena of systems. In this paper, we analyze co-occurrence networks with clique occurrence information (CNCI) thoroughly. First, we describe the components of CNCIs and discuss the generation of clique occurrence information. And then, to illustrate the importance and usefulness of clique occurrence information, several metrics, i.e. single occurrence rate, average size of maximal co-occurrence cliques and four types of co-occurrence coefficients etc., are given. Moreover, some applications, such as combining co-occurrence frequency with structure-oriented centrality measures, are also discussed.

  13. RosBREED: Enabling Marker-Assisted Breeding In Rosaceae

    Technology Transfer Automated Retrieval System (TEKTRAN)

    RosBREED will create a national, dynamic, sustained effort in research, infrastructure establishment, training, and extension for applying marker-assisted breeding (MAB) to deliver improved plant materials more efficiently and rapidly. The Rosaceae family (including apple, peach, sweet and tart cher...

  14. Breeding, Genetics, and Cultivar Development

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Potato breeding is a challenge due to the tetraploid nature of the potato, limited variability for economically important traits in adapted breeding clones, and a complex set of requirements necessary for the successful adoption of new cultivars. However, rich germplasm resources are readily availa...

  15. THE USDA PECAN BREEDING PROGRAM

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This paper outlines how the USDA Pecan Breeding Program is operated to produce superior new cultivars that are given names of Native American peoples, and released for planting in new pecan orchards. The USDA conducts the largest pecan breeding and genetics program in the world. The program is div...

  16. ITER breeding blanket design

    SciTech Connect

    Gohar, Y.; Cardella, A.; Ioki, K.; Lousteau, D.; Mohri, K.; Raffray, R.; Zolti, E.

    1995-12-31

    A breeding blanket design has been developed for ITER to provide the necessary tritium fuel to achieve the technical objectives of the Enhanced Performance Phase. It uses a ceramic breeder and water coolant for compatibility with the ITER machine design of the Basic Performance Phase. Lithium zirconate and lithium oxide am the selected ceramic breeders based on the current data base. Enriched lithium and beryllium neutron multiplier are used for both breeders. Both forms of beryllium material, blocks and pebbles are used at different blanket locations based on thermo-mechanical considerations and beryllium thickness requirements. Type 316LN austenitic steel is used as structural material similar to the shielding blanket. Design issues and required R&D data are identified during the development of the design.

  17. Wetland selection by breeding and foraging black terns in the Prairie Pothole Region of the United States

    USGS Publications Warehouse

    Steen, Valerie A.; Powell, Abby N.

    2012-01-01

    We examined wetland selection by the Black Tern (Chlidonias niger), a species that breeds primarily in the prairie pothole region, has experienced population declines, and is difficult to manage because of low site fidelity. To characterize its selection of wetlands in this region, we surveyed 589 wetlands throughout North and South Dakota. We documented breeding at 5% and foraging at 17% of wetlands. We created predictive habitat models with a machine-learning algorithm, Random Forests, to explore the relative role of local wetland characteristics and those of the surrounding landscape and to evaluate which characteristics were important to predicting breeding versus foraging. We also examined area-dependent wetland selection while addressing the passive sampling bias by replacing occurrence of terns in the models with an index of density. Local wetland variables were more important than landscape variables in predictions of occurrence of breeding and foraging. Wetland size was more important to prediction of foraging than of breeding locations, while floating matted vegetation was more important to prediction of breeding than of foraging locations. The amount of seasonal wetland in the landscape was the only landscape variable important to prediction of both foraging and breeding. Models based on a density index indicated that wetland selection by foraging terns may be more area dependent than that by breeding terns. Our study provides some of the first evidence for differential breeding and foraging wetland selection by Black Terns and for a more limited role of landscape effects and area sensitivity than has been previously shown.

  18. NATIONAL CONTAMINANT OCCURRENCE DATABASE

    EPA Science Inventory

    Resource Purpose:Under the 1996 Safe Drinking Water Act Amendments, EPA is to assemble a National Drinking Water Occurrence Database (NCOD) by August 1999. The NCOD is a collection of data of documented quality on unregulated and regulated chemical, radiological, microbia...

  19. RosBREED: Enabling Marker-Assisted Breeding in Rosaceae

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genomics research has not yet been translated into routine practical application in breeding Rosaceae fruit crops (peach, apple, strawberry, cherry, apricot, pear, raspberry, etc.). Through dedicated efforts of many researchers worldwide, a wealth of genomics resources has accumulated, including ES...

  20. Mutation breeding by ion implantation

    NASA Astrophysics Data System (ADS)

    Yu, Zengliang; Deng, Jianguo; He, Jianjun; Huo, Yuping; Wu, Yuejin; Wang, Xuedong; Lui, Guifu

    1991-07-01

    Ion implantation as a new mutagenic method has been used in the rice breeding program since 1986, and for mutation breeding of other crops later. It has been shown, in principle and in practice, that this method has many outstanding advantages: lower damage rate; higher mutation rate and wider mutational spectrum. Many new lines of rice with higher yield rate; broader disease resistance; shorter growing period but higher quality have been bred from ion beam induced mutants. Some of these lines have been utilized for the intersubspecies hybridization. Several new lines of cotton, wheat and other crops are now in breeding. Some biophysical effects of ion implantation for crop seeds have been studied.

  1. Best of Breed

    NASA Technical Reports Server (NTRS)

    Lohn, Jason

    2004-01-01

    No team of engineers, no matter how much time they took or how many bottles of cabernet they consumed, would dream up an antenna that looked like a deer antler on steroids. Yet that's what a group at NASA Ames Research Center came up with-thanks to a little help from Darwin. NASA's Space Technology 5 nanosatellites, which are scheduled to start measuring Earth's magnetosphere in late 2004, requires an antenna that can receive a wide range of frequencies regardless of the spacecraft's orientation. Rather than leave such exacting requirements in the hands of a human, the engineers decided to breed a design using genetic algorithms and 32 Linux PCs. The computers generated small antenna-constructing programs (the genotypes) and executed them to produce designs (the phenotypes). Then the designs were evaluated using an antenna simulator. The team settled on the form pictured here. You won't find this kind of antenna in any textbook, design guide, or research paper. But its innovative structure meets a challenging set of specifications. If successfully deployed, it will be the first evolved antenna to make it out of the lab and the first piece of evolved hardware ever to fly in space.

  2. Dairy Cattle: Breeding and Genetics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Five primary factors affect breeding genetically improved dairy cattle: 1) identification, 2) pedigree, 3) performance recording, 4) artificial insemination, and 5) genetic evaluation systems (traditional and genomic). Genetic progress can be measured as increased efficiency (higher performance with...

  3. Unbiased survival estimates and evidence for skipped breeding opportunities in females

    USGS Publications Warehouse

    Muths, Erin L.; Scherer, Rick D.; Lambert, Brad A.

    2010-01-01

    5. Establishing the occurrence of temporary emigration not only reduces bias in estimates of survival probabilities but also provides information about expected breeding attempts by females, a critical element in understanding the ecology of an organism and the impacts of outside stressors and conservation actions.

  4. Breeding success and lutein availability in great tit ( Parus major)

    NASA Astrophysics Data System (ADS)

    Sillanpää, Saila; Salminen, Juha-Pekka; Eeva, Tapio

    2009-11-01

    The relationship among temporal variation in the availability of carotenoid-rich food, tissue carotenoid levels and breeding success are poorly known. We studied how diet quality and quantity affect the carotenoid profile and fledging success of great tit ( Parus major) nestlings along a pollution gradient. We found declining seasonal trend in lutein concentration of caterpillars, which may be the explanation for the declining trend in nestlings' lutein concentration of plasma with season, despite the increase in caterpillar biomass. This may be because the biomass of most lutein-rich caterpillars (autumnal moths) decreased and less lutein-rich caterpillars (sawflies) increased during the breeding season. The temporal difference in occurrence of different caterpillar species means that peak lutein availability does not coincide with peak caterpillar abundance. However the positive association between total larval biomass and the number of great tit fledglings may suggest that fledging success depends more on total caterpillar availability than on lutein concentration of caterpillars.

  5. Glycoproteins: Occurrence and Significance

    NASA Astrophysics Data System (ADS)

    Wittmann, Valentin

    Protein glycosylation is regarded as the most complex form of post-translational modification leading to a heterogeneous expression of glycoproteins as mixtures of glycoforms. This chapter describes the structure and occurrence of glycoproteins with respect to their glycan chains. Discussed are different carbohydrate-peptide linkages including GPI anchors, common structures of N- and O-glycans, and the structure of glycosaminoglycans contained in proteoglycans. Also covered are the bacterial cell wall polymer peptidoglycan and the glycopeptide antibiotics of the vancomycin group. Properties and functions of the glycans contained in glycoproteins are dealt with in the next chapter of this book.

  6. Cassava Breeding I: The Value of Breeding Value

    PubMed Central

    Ceballos, Hernán; Pérez, Juan C.; Joaqui Barandica, Orlando; Lenis, Jorge I.; Morante, Nelson; Calle, Fernando; Pino, Lizbeth; Hershey, Clair H.

    2016-01-01

    Breeding cassava relies on several selection stages (single row trial-SRT; preliminary; advanced; and uniform yield trials—UYT). This study uses data from 14 years of evaluations. From more than 20,000 genotypes initially evaluated only 114 reached the last stage. The objective was to assess how the data at SRT could be used to predict the probabilities of genotypes reaching the UYT. Phenotypic data from each genotype at SRT was integrated into the selection index (SIN) used by the cassava breeding program. Average SIN from all the progenies derived from each progenitor was then obtained. Average SIN is an approximation of the breeding value of each progenitor. Data clearly suggested that some genotypes were better progenitors than others (e.g., high number of their progenies reaching the UYT), suggesting important variation in breeding values of progenitors. However, regression of average SIN of each parental genotype on the number of their respective progenies reaching UYT resulted in a negligible coefficient of determination (r2 = 0.05). Breeding value (e.g., average SIN) at SRT was not efficient predicting which genotypes were more likely to reach the UYT stage. Number of families and progenies derived from a given progenitor were more efficient predicting the probabilities of the progeny from a given parent reaching the UYT stage. Large within-family genetic variation tends to mask the true breeding value of each progenitor. The use of partially inbred progenitors (e.g., S1 or S2 genotypes) would reduce the within-family genetic variation thus making the assessment of breeding value more accurate. Moreover, partial inbreeding of progenitors can improve the breeding value of the original (S0) parental material and sharply accelerate genetic gains. For instance, homozygous S1 genotypes for the dominant resistance to cassava mosaic disease (CMD) could be generated and selected. All gametes from these selected S1 genotypes would carry the desirable allele and

  7. Cassava Breeding I: The Value of Breeding Value.

    PubMed

    Ceballos, Hernán; Pérez, Juan C; Joaqui Barandica, Orlando; Lenis, Jorge I; Morante, Nelson; Calle, Fernando; Pino, Lizbeth; Hershey, Clair H

    2016-01-01

    Breeding cassava relies on several selection stages (single row trial-SRT; preliminary; advanced; and uniform yield trials-UYT). This study uses data from 14 years of evaluations. From more than 20,000 genotypes initially evaluated only 114 reached the last stage. The objective was to assess how the data at SRT could be used to predict the probabilities of genotypes reaching the UYT. Phenotypic data from each genotype at SRT was integrated into the selection index (SIN) used by the cassava breeding program. Average SIN from all the progenies derived from each progenitor was then obtained. Average SIN is an approximation of the breeding value of each progenitor. Data clearly suggested that some genotypes were better progenitors than others (e.g., high number of their progenies reaching the UYT), suggesting important variation in breeding values of progenitors. However, regression of average SIN of each parental genotype on the number of their respective progenies reaching UYT resulted in a negligible coefficient of determination (r (2) = 0.05). Breeding value (e.g., average SIN) at SRT was not efficient predicting which genotypes were more likely to reach the UYT stage. Number of families and progenies derived from a given progenitor were more efficient predicting the probabilities of the progeny from a given parent reaching the UYT stage. Large within-family genetic variation tends to mask the true breeding value of each progenitor. The use of partially inbred progenitors (e.g., S1 or S2 genotypes) would reduce the within-family genetic variation thus making the assessment of breeding value more accurate. Moreover, partial inbreeding of progenitors can improve the breeding value of the original (S0) parental material and sharply accelerate genetic gains. For instance, homozygous S1 genotypes for the dominant resistance to cassava mosaic disease (CMD) could be generated and selected. All gametes from these selected S1 genotypes would carry the desirable allele and

  8. Breeding potential of elite Pee Dee germplasm in Upland cotton breeding programs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Successful plant breeding programs begin with parental line selection. Effective parental line selection is facilitated when the breeding potential of candidate parental lines is known. Using topcross families involving germplasm representing eight US public cotton breeding programs, we evaluated th...

  9. Diet of canvasbacks during breeding

    USGS Publications Warehouse

    Austin, J.E.; Serie, J.R.; Noyes, J.H.

    1990-01-01

    We examined diets of canvasbacks (Aythya valisineria) breeding in southwestern Manitoba during 1977-81. Percent volume of animal foods consumed did not differ between males and females nor among prenesting, rapid follicle growth, laying, incubation, and renesting periods in females (mean = 50.1%). Tubers and shoots of fennelleaf pondweed (Potamogeton pectinatus) and midge larvae (Chironomidae) were the predominant foods, comprising on average 45% and 23% of the diet volume, respectively. Continued importance of plant foods to canvasbacks throughout reproduction contrasts with the mostly invertebrate diets of other prairie-breeding ducks, and does not fit current theories of nutritional ecology of breeding anatids (i.e., females meet the protein requirements of reproduction by consuming a high proportion of animal foods).

  10. Emperor penguins breeding on iceshelves.

    PubMed

    Fretwell, Peter T; Trathan, Phil N; Wienecke, Barbara; Kooyman, Gerald L

    2014-01-01

    We describe a new breeding behaviour discovered in emperor penguins; utilizing satellite and aerial-survey observations four emperor penguin breeding colonies have been recorded as existing on ice-shelves. Emperors have previously been considered as a sea-ice obligate species, with 44 of the 46 colonies located on sea-ice (the other two small colonies are on land). Of the colonies found on ice-shelves, two are newly discovered, and these have been recorded on shelves every season that they have been observed, the other two have been recorded both on ice-shelves and sea-ice in different breeding seasons. We conduct two analyses; the first using synthetic aperture radar data to assess why the largest of the four colonies, for which we have most data, locates sometimes on the shelf and sometimes on the sea-ice, and find that in years where the sea-ice forms late, the colony relocates onto the ice-shelf. The second analysis uses a number of environmental variables to test the habitat marginality of all emperor penguin breeding sites. We find that three of the four colonies reported in this study are in the most northerly, warmest conditions where sea-ice is often sub-optimal. The emperor penguin's reliance on sea-ice as a breeding platform coupled with recent concerns over changed sea-ice patterns consequent on regional warming, has led to their designation as "near threatened" in the IUCN red list. Current climate models predict that future loss of sea-ice around the Antarctic coastline will negatively impact emperor numbers; recent estimates suggest a halving of the population by 2052. The discovery of this new breeding behaviour at marginal sites could mitigate some of the consequences of sea-ice loss; potential benefits and whether these are permanent or temporary need to be considered and understood before further attempts are made to predict the population trajectory of this iconic species. PMID:24416381

  11. Comparison of molecular breeding values based on within- and across-breed training in beef cattle

    PubMed Central

    2013-01-01

    Background Although the efficacy of genomic predictors based on within-breed training looks promising, it is necessary to develop and evaluate across-breed predictors for the technology to be fully applied in the beef industry. The efficacies of genomic predictors trained in one breed and utilized to predict genetic merit in differing breeds based on simulation studies have been reported, as have the efficacies of predictors trained using data from multiple breeds to predict the genetic merit of purebreds. However, comparable studies using beef cattle field data have not been reported. Methods Molecular breeding values for weaning and yearling weight were derived and evaluated using a database containing BovineSNP50 genotypes for 7294 animals from 13 breeds in the training set and 2277 animals from seven breeds (Angus, Red Angus, Hereford, Charolais, Gelbvieh, Limousin, and Simmental) in the evaluation set. Six single-breed and four across-breed genomic predictors were trained using pooled data from purebred animals. Molecular breeding values were evaluated using field data, including genotypes for 2227 animals and phenotypic records of animals born in 2008 or later. Accuracies of molecular breeding values were estimated based on the genetic correlation between the molecular breeding value and trait phenotype. Results With one exception, the estimated genetic correlations of within-breed molecular breeding values with trait phenotype were greater than 0.28 when evaluated in the breed used for training. Most estimated genetic correlations for the across-breed trained molecular breeding values were moderate (> 0.30). When molecular breeding values were evaluated in breeds that were not in the training set, estimated genetic correlations clustered around zero. Conclusions Even for closely related breeds, within- or across-breed trained molecular breeding values have limited prediction accuracy for breeds that were not in the training set. For breeds in the training

  12. Breeding monkeys for biomedical research

    NASA Technical Reports Server (NTRS)

    Bourne, G. H.; Golarzdebourne, M. N.; Keeling, M. E.

    1973-01-01

    Captive bred rhesus monkeys show much less pathology than wild born animals. The monkeys may be bred in cages or in an outdoor compound. Cage bred animals are not psychologically normal which makes then unsuited for some types of space related research. Compound breeding provides contact between mother and infant and an opportunity for the infants to play with their peers which are important requirements to help maintain their behavioral integrity. Offspring harvested after a year in the compound appear behaviorally normal and show little histopathology. Compound breeding is also an economical method for the rapid production of young animals. The colony can double its size about every two and a half years.

  13. Breed base representation in dairy animals of 5 breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Inheritance of DNA from different dairy breeds can be determined by genotyping, just as individual ancestors such as parents, grandparents, or even great grandparents can be identified correctly in a high percentage of the cases by genotyping even if not reported or reported incorrectly in pedigrees...

  14. Breeding canvasbacks: a test of a habitat model

    USGS Publications Warehouse

    Johnson, D.H.; Hammond, M.C.; McDonald, T.L.; Nustad, C.L.

    1989-01-01

    Schroeder (1984) proposed a habitat suitability model for breeding canvasbacks (Aythya valisineria) based on the size, water regime, and emergent vegetation of wetlands. We evaluated the model with data from surveys of canvasbacks on 2265 wetlands in North Dakota, South Dakota, and Minnesota. The model proved inadequate as a predictor of canvasback pair density; the correlation between values produced by the model and canvasback pair densities was r = 0.0023 (P = 0.911). There were, however, suggestions of (1) higher canvasback density and frequency of occurrence on wetlands with more open interiors, and (2) a relation between canvasback density and wetland size that varied according to wetland permanence. We recommend that the model be improved by testing these relations, and possibly by incorporating determinants of water quality or pondweed (Potamogeton spp.) occurrence.

  15. Forage Breeding and New Varieties

    Technology Transfer Automated Retrieval System (TEKTRAN)

    At Agriculture and Agri-Food Canada, the focus of the forage breeding program is to identify and develop novel germplasm and cultivars. The main objective is to produce cultivars with superior persistence, nutritive value and forage yield. This program also emphasizes two other objectives, namely:...

  16. Genomic selection in plant breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genomic selection (GS) is a method to predict the genetic value of selection candidates based on the genomic estimated breeding value (GEBV) predicted from high-density markers positioned throughout the genome. Unlike marker-assisted selection, the GEBV is based on all markers including both minor ...

  17. USDA lettuce breeding and genetics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The lettuce industry of California requires continued development of improved, adapted cultivars to meet new disease and insect problems, changes in the market, and changes in growing procedures. The USDA lettuce breeding and genetics project aims to incorporate valuable traits into crisphead, mixed...

  18. The evolution of potato breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Potato cultivars in most regions of the world are tetraploid and clonally propagated. For over a century, the breeding strategy has been phenotypic recurrent selection. However, the polyploid nature of the crop prevents breeders from eliminating deleterious alleles and assembling positive alleles fo...

  19. Breeding and propagating oakleaf hydrangeas

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An oakleaf hydrangea breeding program at the U.S. National Arboretum’s worksite in McMinnville, Tenn. was started in 1996 for the purpose of developing attractive, compact oakleaf hydrangea cultivars suitable for use in small residential gardens. ‘Ruby Slippers’ and ‘Munchkin’ oakleaf hydrangeas we...

  20. Forage breeding and new varieties

    Technology Transfer Automated Retrieval System (TEKTRAN)

    At Agriculture and Agri-Food Canada, the focus of the forage breeding program is to identify and develop novel germplasm and cultivars. The main objective is to produce cultivars with superior persistence, nutritive value and forage yield. This program also emphasizes two other objectives, namely:...

  1. Cerulean Warbler occurrence and habitat use of Oklahoma

    USGS Publications Warehouse

    Leslie,, David M., Jr.; O'Connell, Timothy J.; Cavalieri, Vincent S.

    2011-01-01

    Dendroica cerulea (Cerulean Warbler) is a migrant songbird that has declined rangewide in recent decades. We surveyed 150 sites in 2006–2007 to determine if this species still occupied its former breeding range in Oklahoma. We located Cerulean Warblers at 5 sites and confirmed breeding on north slopes of two heavily forested ridges in the Ouachita Mountains. We did not encounter Cerulean Warblers in any bottomland hardwoods, despite the former widespread distribution and abundance of the species in such habitats. While habitat loss and degradation may limit occurrence of Cerulean Warbler in some areas, the pattern of decline for this species at the edge of its range in Oklahoma is also consistent with abandonment of peripheral range as the range-wide population declines.

  2. METAPOPULATION STRUCTURE AND DYNAMICS OF POND BREEDING

    EPA Science Inventory

    Our review indicates that pond breeding amphibians exhibit highly variable spatial and temporal population dynamics, such that no single generalized model can realistically describe these animals. We propose that consideration of breeding pond permanence, and adaptations to pond ...

  3. Genetic Diversity of US Sheep Breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding the genetic relationships between US sheep breeds is useful in developing conservation strategies and actions. A broad sampling of individual sheep from 28 breeds was performed. Breed types included: fine wool, meat types, long wool, hair, prolific, and fat tailed. Blood and semen samp...

  4. Considerations related to breed or biological type.

    PubMed

    Van Eenennaam, Alison L

    2013-11-01

    This article reviews the literature on breed, biological type, and breeding system and their impact on female fertility, especially as they relate to heifer development. The attributes of different breeding systems and their appropriate use is discussed. In addition, the extant and emerging selection tools that are available for replacement heifer selection are reviewed. PMID:24182431

  5. Blast resistance in rice: a review of conventional breeding to molecular approaches.

    PubMed

    Miah, G; Rafii, M Y; Ismail, M R; Puteh, A B; Rahim, H A; Asfaliza, R; Latif, M A

    2013-03-01

    Blast disease caused by the fungal pathogen Magnaporthe oryzae is the most severe diseases of rice. Using classical plant breeding techniques, breeders have developed a number of blast resistant cultivars adapted to different rice growing regions worldwide. However, the rice industry remains threatened by blast disease due to the instability of blast fungus. Recent advances in rice genomics provide additional tools for plant breeders to improve rice production systems that would be environmentally friendly. This article outlines the application of conventional breeding, tissue culture and DNA-based markers that are used for accelerating the development of blast resistant rice cultivars. The best way for controlling the disease is to incorporate both qualitative and quantitative genes in resistant variety. Through conventional and molecular breeding many blast-resistant varieties have been developed. Conventional breeding for disease resistance is tedious, time consuming and mostly dependent on environment as compare to molecular breeding particularly marker assisted selection, which is easier, highly efficient and precise. For effective management of blast disease, breeding work should be focused on utilizing the broad spectrum of resistance genes and pyramiding genes and quantitative trait loci. Marker assisted selection provides potential solution to some of the problems that conventional breeding cannot resolve. In recent years, blast resistant genes have introgressed into Luhui 17, G46B, Zhenshan 97B, Jin 23B, CO39, IR50, Pusa1602 and Pusa1603 lines through marker assisted selection. Introduction of exotic genes for resistance induced the occurrence of new races of blast fungus, therefore breeding work should be concentrated in local resistance genes. This review focuses on the conventional breeding to the latest molecular progress in blast disease resistance in rice. This update information will be helpful guidance for rice breeders to develop durable blast

  6. Emperor Penguins Breeding on Iceshelves

    PubMed Central

    Fretwell, Peter T.; Trathan, Phil N.; Wienecke, Barbara; Kooyman, Gerald L.

    2014-01-01

    We describe a new breeding behaviour discovered in emperor penguins; utilizing satellite and aerial-survey observations four emperor penguin breeding colonies have been recorded as existing on ice-shelves. Emperors have previously been considered as a sea-ice obligate species, with 44 of the 46 colonies located on sea-ice (the other two small colonies are on land). Of the colonies found on ice-shelves, two are newly discovered, and these have been recorded on shelves every season that they have been observed, the other two have been recorded both on ice-shelves and sea-ice in different breeding seasons. We conduct two analyses; the first using synthetic aperture radar data to assess why the largest of the four colonies, for which we have most data, locates sometimes on the shelf and sometimes on the sea-ice, and find that in years where the sea-ice forms late, the colony relocates onto the ice-shelf. The second analysis uses a number of environmental variables to test the habitat marginality of all emperor penguin breeding sites. We find that three of the four colonies reported in this study are in the most northerly, warmest conditions where sea-ice is often sub-optimal. The emperor penguin’s reliance on sea-ice as a breeding platform coupled with recent concerns over changed sea-ice patterns consequent on regional warming, has led to their designation as “near threatened” in the IUCN red list. Current climate models predict that future loss of sea-ice around the Antarctic coastline will negatively impact emperor numbers; recent estimates suggest a halving of the population by 2052. The discovery of this new breeding behaviour at marginal sites could mitigate some of the consequences of sea-ice loss; potential benefits and whether these are permanent or temporary need to be considered and understood before further attempts are made to predict the population trajectory of this iconic species. PMID:24416381

  7. Assortative mating and fragmentation within dog breeds

    PubMed Central

    2008-01-01

    Background There are around 400 internationally recognized dog breeds in the world today, with a remarkable diversity in size, shape, color and behavior. Breeds are considered to be uniform groups with similar physical characteristics, shaped by selection rooted in human preferences. This has led to a large genetic difference between breeds and a large extent of linkage disequilibrium within breeds. These characteristics are important for association mapping of candidate genes for diseases and therefore make dogs ideal models for gene mapping of human disorders. However, genetic uniformity within breeds may not always be the case. We studied patterns of genetic diversity within 164 poodles and compared it to 133 dogs from eight other breeds. Results Our analyses revealed strong population structure within poodles, with differences among some poodle groups as pronounced as those among other well-recognized breeds. Pedigree analysis going three generations back in time confirmed that subgroups within poodles result from assortative mating imposed by breed standards as well as breeder preferences. Matings have not taken place at random or within traditionally identified size classes in poodles. Instead, a novel set of five poodle groups was identified, defined by combinations of size and color, which is not officially recognized by the kennel clubs. Patterns of genetic diversity in other breeds suggest that assortative mating leading to fragmentation may be a common feature within many dog breeds. Conclusion The genetic structure observed in poodles is the result of local mating patterns, implying that breed fragmentation may be different in different countries. Such pronounced structuring within dog breeds can increase the power of association mapping studies, but also represents a serious problem if ignored. In dog breeding, individuals are selected on the basis of morphology, behaviour, working or show purposes, as well as geographic population structure. The same

  8. Migratory double breeding in Neotropical migrant birds

    PubMed Central

    Rohwer, Sievert; Hobson, Keith A.; Rohwer, Vanya G.

    2009-01-01

    Neotropical migratory songbirds typically breed in temperate regions and then travel long distances to spend the majority of the annual cycle in tropical wintering areas. Using stable-isotope methodology, we provide quantitative evidence of dual breeding ranges for 5 species of Neotropical migrants. Each is well known to have a Neotropical winter range and a breeding range in the United States and Canada. However, after their first bout of breeding in the north, many individuals migrate hundreds to thousands of kilometers south in midsummer to breed a second time during the same summer in coastal west Mexico or Baja California Sur. They then migrate further south to their final wintering areas in the Neotropics. Our discovery of dual breeding ranges in Neotropical migrants reveals a hitherto unrealized flexibility in life-history strategies for these species and underscores that demographic models and conservation plans must consider dual breeding for these migrants. PMID:19858484

  9. Unconventional methods in plant breeding.

    PubMed

    Melchers, G

    There are three wass whereby unconventional methods of plant genetics can be used for applied plant breeding. 1. The time necessary for breeding by recombination can be shortened, making use of the discovery that plants can be obtained directly from the products of meiosis, the "Gonen." Two new cultivars bred in tobacco by this method already exist. 2. Microbiological methods may be applied to mutation and selection in haploid or dihaploid cell cultures. New cultivars bred by this method have not yet been published, but it should be possible to make use of this technique in plant breeding. 3. Somatic hybridization of plants by fusions of protoplasts or by uptake of nuclei and other organelles (plastids, mitochondria) or pure nucleic acids is another useful method. There exist up to now somatic hybrid plants (a) between mutants of the liverwort Sphaerocarpos donnellii, (b) some varieties of tobacco, and (c) two species of Nicotiana. All these hybrids can also be produced by conventional sexual hybridization. It is impossible to predict how often incompatibility for cross-fertilization can be surmounted by somatic hybridization, as incompatibility between two genomes must be restricted to the fertilization process, but it can work on any stage of the development of the hybrid. PMID:1032113

  10. Occurrence of halogenated alkaloids.

    PubMed

    Gribble, Gordon W

    2012-01-01

    Once considered to be isolation artifacts or chemical "mistakes" of nature, the number of naturally occurring organohalogen compounds has grown from a dozen in 1954 to >5000 today. Of these, at least 25% are halogenated alkaloids. This is not surprising since nitrogen-containing pyrroles, indoles, carbolines, tryptamines, tyrosines, and tyramines are excellent platforms for biohalogenation, particularly in the marine environment where both chloride and bromide are plentiful for biooxidation and subsequent incorporation into these electron-rich substrates. This review presents the occurrence of all halogenated alkaloids, with the exception of marine bromotyrosines where coverage begins where it left off in volume 61 of The Alkaloids. Whereas the biological activity of these extraordinary compounds is briefly cited for some examples, a future volume of The Alkaloids will present full coverage of this topic and will also include selected syntheses of halogenated alkaloids. Natural organohalogens of all types, especially marine and terrestrial halogenated alkaloids, comprise a rapidly expanding class of natural products, in many cases expressing powerful biological activity. This enormous proliferation has several origins: (1) a revitalization of natural product research in a search for new drugs, (2) improved compound characterization methods (multidimensional NMR, high-resolution mass spectrometry), (3) specific enzyme-based and other biological assays, (4) sophisticated collection methods (SCUBA and remote submersibles for deep ocean marine collections), (5) new separation and purification techniques (HPLC and countercurrent separation), (6) a greater appreciation of traditional folk medicine and ethobotany, and (7) marine bacteria and fungi as novel sources of natural products. Halogenated alkaloids are truly omnipresent in the environment. Indeed, one compound, Q1 (234), is ubiquitous in the marine food web and is found in the Inuit from their diet of whale

  11. Breeding habitat associations and predicted distribution of an obligate tundra-breeding bird, Smith's Longspur

    USGS Publications Warehouse

    Wild, Teri C.; Kendall, Steven J.; Guldager, Nikki; Powell, Abby N.

    2015-01-01

    Smith's Longspur (Calcarius pictus) is a species of conservation concern which breeds in Arctic habitats that are expected to be especially vulnerable to climate change. We used bird presence and habitat data from point-transect surveys conducted at 12 sites across the Brooks Range, Alaska, 2003–2009, to identify breeding areas, describe local habitat associations, and identify suitable habitat using a predictive model of Smith's Longspur distribution. Smith's Longspurs were observed at seven sites, where they were associated with a variety of sedge–shrub habitats composed primarily of mosses, sedges, tussocks, and dwarf shrubs; erect shrubs were common but sparse. Nonmetric multidimensional scaling ordination of ground cover revealed positive associations of Smith's Longspur presence with sedges and mosses and a negative association with high cover of shrubs. To model predicted distribution, we used boosted regression trees to relate landscape variables to occurrence. Our model predicted that Smith's Longspurs may occur in valleys and foothills of the northeastern and southeastern mountains and in upland plateaus of the western mountains, and farther west than currently documented, over a predicted area no larger than 15% of the Brooks Range. With climate change, shrubs are expected to grow larger and denser, while soil moisture and moss cover are predicted to decrease. These changes may reduce Smith's Longspur habitat quality and limit distribution in the Brooks Range to poorly drained lowlands and alpine plateaus where sedge–shrub tundra is likely to persist. Conversely, northward advance of shrubs into sedge tundra may create suitable habitat, thus supporting a northward longspur distribution shift.

  12. [Occurrance of antibodies against Leptospira in horses in Middle Germany].

    PubMed

    Pikalo, Jutta; Sattler, Tatjana; Eichinger, Michaela; Loitsch, Angelika; Sun, Hao; Schmoll, Friedrich; Schusser, Gerald Fritz

    2016-01-01

    Aim of the study was to detect antibodies and potential risk factors for an infec- tion with Leptospira in horses in Middle Germany. Serum samples of 314 horses were examined retrospectively by microscopic agglutination test for the presence of antibodies against eight Leptospira serovars. In total, 17.2% (n = 54) of the horses were positive for one or more of the serovars analyzed. The most prevalent serovar was lcterohaemorrhagiae (11.1%), followed by serovar Bratislava (9.6 %) and Grippotyphosa (1.9%). Mares showed a significantly higher occurrence of antibodies (p < 0.05) than geldings or stallions. Horses used for breeding have a significantly lower risk than horses used in sport or horses used for leisure activity. There was also a significantly higher prevalence (p < 0.05) in summer than in the other seasons. No significant influence of breed, husbandry conditions and age on the antibody occurrence was observed (p > 0.05). The clinical chemical parameters did not differ significantly between horses with positive or negative Leptospira antibody result (p > 0.05). It became apparent that horses can be infected with Leptospira without developing of clinical symptoms. PMID:27344912

  13. [The native domestic animal breeds of Japan].

    PubMed

    Sambraus, H H

    1989-01-01

    During the last decades some domestic animal breeds have spread to all parts of the world. In general, consideration is given to these breeds only; on the other hand, autochthonous breeds of various countries are hardly known. These, however, can be valuable gene-reserves, and moreover, they represent a significant cultural value. In Japan there are several domestic animal breeds which are almost unknown in Central Europe. They are presented verbally and by means of illustration, and their breeding history is dealt with as well. The purpose of this study is to point out the importance of these breeds within the country and to make clear the extent of the danger of their extinction. PMID:2683212

  14. [Progress and countermeasures of Dendrobium officinale breeding].

    PubMed

    Si, Jin-Ping; He, Bo-wei; Yu, Qiao-xian

    2013-02-01

    The standandized cultivation of Chinese medicinal materials is based on variety. With the rapid development of Dendrobium officinale industry and increasing demand of improved varieties, many studies have concentrated on the variety breeding of D. officinale and subsequently achieved remarkable success. This paper systematically expounds the research progress of D. officinale breeding, e. g. the collection and differentiated evaluation for germplasm, theory and practice for variety breeding, tissue culture and efficient production with low-carbon for germchit, and DNA molecular marker-assisted breeding, and then indicates the main problems of the current breeding of D. officinale. Furthermore, the priorities and keys for the further breeding of D. officinale have been pointed out. PMID:23713267

  15. Genomics-assisted breeding in fruit trees

    PubMed Central

    Iwata, Hiroyoshi; Minamikawa, Mai F.; Kajiya-Kanegae, Hiromi; Ishimori, Motoyuki; Hayashi, Takeshi

    2016-01-01

    Recent advancements in genomic analysis technologies have opened up new avenues to promote the efficiency of plant breeding. Novel genomics-based approaches for plant breeding and genetics research, such as genome-wide association studies (GWAS) and genomic selection (GS), are useful, especially in fruit tree breeding. The breeding of fruit trees is hindered by their long generation time, large plant size, long juvenile phase, and the necessity to wait for the physiological maturity of the plant to assess the marketable product (fruit). In this article, we describe the potential of genomics-assisted breeding, which uses these novel genomics-based approaches, to break through these barriers in conventional fruit tree breeding. We first introduce the molecular marker systems and whole-genome sequence data that are available for fruit tree breeding. Next we introduce the statistical methods for biparental linkage and quantitative trait locus (QTL) mapping as well as GWAS and GS. We then review QTL mapping, GWAS, and GS studies conducted on fruit trees. We also review novel technologies for rapid generation advancement. Finally, we note the future prospects of genomics-assisted fruit tree breeding and problems that need to be overcome in the breeding. PMID:27069395

  16. Breeding without Breeding: Is a Complete Pedigree Necessary for Efficient Breeding?

    PubMed Central

    El-Kassaby, Yousry A.; Cappa, Eduardo P.; Liewlaksaneeyanawin, Cherdsak; Klápště, Jaroslav; Lstibůrek, Milan

    2011-01-01

    Complete pedigree information is a prerequisite for modern breeding and the ranking of parents and offspring for selection and deployment decisions. DNA fingerprinting and pedigree reconstruction can substitute for artificial matings, by allowing parentage delineation of naturally produced offspring. Here, we report on the efficacy of a breeding concept called “Breeding without Breeding” (BwB) that circumvents artificial matings, focusing instead on a subset of randomly sampled, maternally known but paternally unknown offspring to delineate their paternal parentage. We then generate the information needed to rank those offspring and their paternal parents, using a combination of complete (full-sib: FS) and incomplete (half-sib: HS) analyses of the constructed pedigrees. Using a random sample of wind-pollinated offspring from 15 females (seed donors), growing in a 41-parent western larch population, BwB is evaluated and compared to two commonly used testing methods that rely on either incomplete (maternal half-sib, open-pollinated: OP) or complete (FS) pedigree designs. BwB produced results superior to those from the incomplete design and virtually identical to those from the complete pedigree methods. The combined use of complete and incomplete pedigree information permitted evaluating all parents, both maternal and paternal, as well as all offspring, a result that could not have been accomplished with either the OP or FS methods alone. We also discuss the optimum experimental setting, in terms of the proportion of fingerprinted offspring, the size of the assembled maternal and paternal half-sib families, the role of external gene flow, and selfing, as well as the number of parents that could be realistically tested with BwB. PMID:21991342

  17. Peridomiciliary Breeding Sites of Phlebotomine Sand Flies (Diptera: Psychodidae) in an Endemic Area of American Cutaneous Leishmaniasis in Southeastern Brazil

    PubMed Central

    Vieira, Vivaldo Pim; Ferreira, Adelson Luiz; Biral dos Santos, Claudiney; Leite, Gustavo Rocha; Ferreira, Gabriel Eduardo Melim; Falqueto, Aloísio

    2012-01-01

    The occurrence of American cutaneous leishmaniasis (ACL) in areas modified by humans indicates that phlebotomine sand fly vectors breed close to human habitations. Potential peridomiciliary breeding sites of phlebotomines were sampled in an area of transmission of Leishmania (Viannia) braziliensis in Southeastern Brazil. Three concentric circles rounding houses and domestic animal shelters, with radii of 20, 40, and 60 m, defined the area to be monitored using adult emergence traps. Of the 67 phlebotomines collected, Lutzomyia intermedia comprised 71.6%; Lutzomyia schreiberi, 20.9%; and Lutzomyia migonei, 4.5%. The predominance of L. intermedia, the main species suspected of transmitting L. (V.) braziliensis in Southeastern Brazil, indicates its participation in the domiciliary transmission of ACL, providing evidence that the domiciliary ACL transmission cycle might be maintained by phlebotomines that breed close to human habitations. This finding might also help in planning measures that would make the peridomiciliary environment less favorable for phlebotomine breeding sites. PMID:23091196

  18. Trophic ecology of the Grey Wagtail Motacilla cinerea before and during the breeding season in the region of Bejaia (Algeria).

    PubMed

    Bougaham, Abdelazize Franck; Moulaï, Riadh; O'Halloran, John

    2014-01-01

    The diet composition of the Grey Wagtail Motacilla cinerea of the Babor Range is followed by analysis of faecal samples (90 faeces) before and during the breeding season 2010. The Grey Wagtail's diet varies depending on the stage of the breeding cycle at the southern edge of their breeding area in North Africa (Bejaia). The diet consists predominantly of aquatic preys (51.79%), with Coleoptera being the most frequent constituent (n=331, 45.5%). During the pre-laying period (February-March), the diet was variable (91 prey-taxa and H'=3,36 bits) and preys of medium size (5 to 8mm) were most common. During the incubation period (April-May), preys were mainly aquatic (60%) and larger (20 to 32mm). At the end of the breeding season (June-July), there was a greater occurrence of terrestrial preys (31 aquatic versus 30 terrestrial taxa). PMID:25103832

  19. Comparison of molecular breeding values based on within- and across-breed training in beef cattle

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background Although the efficacy of genomic predictors based on within-breed training looks promising, it is necessary to develop and evaluate across-breed predictors for the technology to be fully applied in the beef industry. The efficacies of genomic predictors trained in one breed and utilized ...

  20. Occurrence of veterinary pharmaceuticals in the aquatic environment in Flanders

    NASA Astrophysics Data System (ADS)

    Servaes, K.; Vanermen, G.; Seuntjens, P.

    2009-04-01

    There is a growing interest in the occurrence of pharmaceuticals in the aquatic environment. Pharmaceuticals are classified as so-called ‘emerging pollutants'. ‘Emerging pollutants' are not necessarily new chemical compounds. Often these compounds are already present in the environment for a long time. But, their occurrence and especially their impact on the environment has only recently become clear. Consequently, data on their occurrence are rather scarce. In this study, we focus on the occurrence of veterinary pharmaceuticals in surface water in Flanders. We have only considered active substances administered to cattle, pigs and poultry. Based on the literature and information concerning the use in Belgium, a selection of 25 veterinary pharmaceuticals has been made. This selection consists of the most important antibiotics and antiparasitic substances applied in veterinary medicine in Belgium. We develop an analytical methodology based on UPLC-MS/MS for the detection of these veterinary pharmaceuticals in surface water. Therefore, the mass characteristics as well as the optimum LC conditions will be determined. To obtain limits of detection as low as possible, the samples are concentrated prior to analysis using solid phase extraction (SPE). Different SPE cartridges will be tested during the method development. At first, this SPE sample pre-treatment is performed off-line. In a next step, online SPE is optimized for this purpose. The analytical procedure will be subject to an in-house validation study, thereby determining recovery, repeatability (% RSD), limits of detection and limits of quantification. Finally, the developed methodology will be applied for monitoring the occurrence of veterinary pharmaceuticals in surface water and groundwater in Flanders. These water samples will be taken in areas characterized by intensive cattle breeding. Moreover, the samples will be collected during springtime. In this season, farmers apply manure, stored during winter

  1. Breeding bird populations and habitat associations within the Savannah River Site (SRS).

    SciTech Connect

    Gauthreaux, Sidney, A.; Steven J. Wagner.

    2005-06-29

    Gauthreaux, Sidney, A., and Steven J. Wagner. 2005. Breeding bird populations and habitat associations within the Savannah River Site (SRS). Final Report. USDA Forest Service, Savannah River, Aiken, SC. 48 pp. Abstract: During the 1970's and 1980's a dramatic decline occurred in the populations of Neotropical migratory birds, species that breed in North America and winter south of the border in Central and South America and in the Caribbean. In 1991 an international initiative was mounted by U. S. governmental land management agencies, nongovernmental conservation agencies, and the academic and lay ornithological communities to understand the decline of Neotropical migratory birds in the Americas. In cooperation with the USDA Forest Service - Savannah River (FS - SR) we began 1992 a project directed to monitoring population densities of breeding birds using the Breeding Bird Census (BBC) methodology in selected habitats within the Savannah River Site SRS. In addition we related point count data on the occurrence of breeding Neotropical migrants and other bird species to the habitat data gathered by the Forest Inventory and Analysis (FIA) program of the USDA Forest Service and data on habitat treatments within forest stands.

  2. USVL-220, A Novel Watermelon Breeding Line

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A novel watermelon breeding line was developed at the USDA, ARS, U.S. Vegetable Laboratory, Charleston, South Carolina. This breeding line contains the nuclear genome of cultivated watermelon (Citrullus lanatus var. lanatus) and the chloroplast and mitochondrial genomic background of the desert spe...

  3. What breeds make up the national herd?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Changes in the procedures and database at the Animal Improvement Programs Laboratory have resulted in the ability to know which breeds contribute to each cow and in what proportion. Previously each animal was considered to be the single breed reported through the dairy industry; therefore, statistic...

  4. Grasses and Legumes: Genetics and Plant Breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Humans have been breeding forage and turf species for over 100 years. This chapter explores the progress that has been made in improving grasses and legumes for human benefit and the evolution of breeding and selection systems that have brought about those changes....

  5. Breeding sugarcane for temperate and cold environments

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Louisiana represents one of the world’s more temperate environments where sugarcane is commercially grown. Since its inception in the 1920s, The USDA-ARS breeding program at the Sugarcane Research Laboratory in Houma, Louisiana, U.S.A. has focused on breeding varieties adapted to this unique envir...

  6. Mean EPDs reported by different breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beef cattle genetic evaluations result in expected progeny differences (EPDs), which can be used to select animals for growth, productivity, carcass composition, and, most recently, economic value. Breed averages allow producers to compare the genetic value of potential breed stock against their br...

  7. Mean EPDs Reported by Different Breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beef cattle genetic evaluations result in expected progeny differences (EPDs), which can be used to select animals for growth, productivity, carcass composition, and, most recently, economic value. Breed averages allow producers to compare the genetic value of potential breeding stock against their...

  8. Breeding Perspectives and Programs at East Lansing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    USDA-ARS sugar beet breeding activities for both Aphanomyces resistance and CMS/O-type conversion at East Lansing reach back to the 1940’s, with variety testing activities at Michigan State University reaching back to circa 1911. Many of those contributions are well known in the sugar beet breeding ...

  9. Plant Breeding: Surprisingly, Less Sex Is Better.

    PubMed

    van Dijk, Peter J; Rigola, Diana; Schauer, Stephen E

    2016-02-01

    Introduction of apomixis, asexual reproduction through seeds, into crop species has the potential to dramatically transform plant breeding. A new study demonstrates that traits can be stably transferred between generations in newly produced apomictic lines, and heralds a breeding revolution needed to increase food production for the growing planet. PMID:26859270

  10. Mean EPDs Reported by Different Breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beef cattle genetic evaluations result in expected progeny differences (EPDs), which can be used to select animals for growth, productivity, carcass composition, and, most recently, economic value. Breed averages allow producers to compare the genetic value of potential breed stock against their br...

  11. Breeding commercial sugarcane varieties for the industry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Recent literature suggests that sugarcane breeding in the United States has reached a sugar yield plateau. If so, this could have huge implications for the future of the industry and breeding per se because yield improvement might have to be achieved through secondary, non-sugar-related traits, or t...

  12. Mean EPDs reported by different breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beef cattle genetic evaluations result in expected progeny differences (EPDs), which can be used to select animals for growth, productivity, carcass composition, and, most recently, economic value. Breed averages allow producers to compare the genetic value of potential breeding stock against their...

  13. Breeding potato at the diploid level

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In most regions of the world, potato cultivars are tetraploid. However, complexities due to tetraploid genetics have slowed breeding progress and limited the implementation of breeding strategies commonly used in other major crops. We are developing diploid genetics resources, including partially in...

  14. Mean EPDs reported by different breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Beef cattle genetic evaluations result in expected progeny differences (EPDs), which can be used to select animals for growth, productivity, carcass composition, and, most recently, economic value. Breed averages allow producers to compare the genetic value of potential breeding stock against their ...

  15. Genetic Evaluations for Mixed-Breed Populations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An all-breed animal model was developed for routine genetic evaluations of US dairy cattle. Data sets from individual breeds were combined, and records from crossbred cows were included. About 1% of recent cows were first generation crossbreds. Numbers of cows with records since 1960 ranged from 10 ...

  16. Sugarcane Improvement Through Breeding and Biotechnology

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The advancements in sugarcane breeding and the improvement of sugarcane through biotechnology have been reviewed by a team of leading sugarcane specialists from around the world. Topics covered in the breeding section include the evolution and origin of sugarcane, early history of conventional sugar...

  17. Breeding broccoli adapted to high temperature environments

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A breeding program to select broccoli (Brassica oleracea L. Italica Group) for adaptation to summer environments has been conducted at the U.S. Vegetable Laboratory (USVL) in Charleston, South Carolina, for almost two decades. This effort provides a case study of a concerted effort to breed polygen...

  18. Relationships between circulating androgens, aggressive behaviour and breeding tubercles in males of the common bream Abramis brama L. in an aquarium environment.

    PubMed

    Poncin, P; Matondo, B Nzau; Termol, C; Kestemont, P; Philippart, J C

    2011-09-01

    In this study, relationships between circulating androgens, aggressive behaviour and breeding tubercles in males of common bream Abramis brama were examined in an aquarium environment. The breeding tubercles of fish were counted, the number of attacks was quantified by male status and circulating rates of testosterone and 11-ketotestosterone from blood plasma were analysed using radioimmunoassay procedures. The results revealed that no significant differences were found between circulating testosterone and 11-ketotestosterone in territorial and nonterritorial males. Furthermore, no significant correlations were found between circulating androgens, androgens and aggression, androgens and tubercles and breeding tubercles and aggression in common bream by male status. However, territorial fish displayed a significantly higher level of aggressive behaviour and breeding tubercles than nonterritorial fish. In natural environments, the occurrence of breeding tubercles during the spawning season could contribute to identifying the behavioural status of common bream males. PMID:21132526

  19. Genetic diversity and phylogenetic relationships in local cattle breeds of Senegal based on autosomal microsatellite markers

    PubMed Central

    Ndiaye, Ndèye Penda; Sow, Adama; Dayo, Guiguigbaza-Kossigan; Ndiaye, Saliou; Sawadogo, Germain Jerôme; Sembène, Mbacké

    2015-01-01

    Aim: In Senegal, uncontrolled cross-breeding of cattle breeds and changes in production systems are assumed to lead to an increase of gene flow between populations. This might constitute a relevant threat to livestock improvement. Therewith, this study was carried out to assess the current genetic diversity and the phylogenetic relationships of the four native Senegalese cattle breeds (Gobra zebu, Maure zebu, Djakoré, and N’Dama). Methods: Genomic DNA was isolated from blood samples of 120 unrelated animals collected from three agro-ecological areas of Senegal according to their phenotypic traits. Genotyping was done using 11 specific highly polymorphic microsatellite makers recommended by Food and Agriculture Organization. The basic measures of genetic variation and phylogenetic trees were computed using bioinformatics’ software. Results: A total of 115 alleles were identified with a number of alleles (Na) at one locus ranging from 6 to 16. All loci were polymorphic with a mean polymorphic information content of 0.76. The mean allelic richness (Rs) lay within the narrow range of 5.14 in N’Dama taurine to 6.10 in Gobra zebu. While, the expected heterozygosity (HE) per breed was high in general with an overall mean of 0.76±0.04. Generally, the heterozygote deficiency (FIS) of 0.073±0.026 was relatively due to inbreeding among these cattle breeds or the occurrence of population substructure. The high values of allelic and gene diversity showed that Senegalese native cattle breeds represented an important reservoir of genetic variation. The genetic distances and clustering trees concluded that the N’Dama cattle were most distinct among the investigated cattle populations. So, the principal component analyses showed qualitatively that there was an intensive genetic admixture between the Gobra zebu and Maure zebu breeds. Conclusions: The broad genetic diversity in Senegalese cattle breeds will allow for greater opportunities for improvement of productivity

  20. STUDY OF WATERBORNE DISEASE OCCURRENCE

    EPA Science Inventory

    The SDWA Amendments of 1996 added a requirement for EPA and the Centers for Disease Control and Prevention (CDC) to jointly carry out "pilot waterborne disease occurrence studies for at least five major U.S. communities or public water systems" and "prepare a report on the findin...

  1. CHIRAL POLLUTANTS: OCCURRENCE AND SIGNIFICANCE

    EPA Science Inventory

    This task involves process research to determine the environmental occurrence and fate of enantiomers of selected chiral pesticides, PCBs and other chiral pollutants with an emphasis on currently-used modern pesticides expected to have short to intermediate environmental half-liv...

  2. First natural occurrence of coesite

    USGS Publications Warehouse

    Chao, E.C.T.; Shoemaker, E.M.; Madsen, B.M.

    1960-01-01

    Coesite, the high-pressure polymorph of SiO2, hitherto known only as a synthetic compound, is identified as an abundant mineral in sheared Coconino sandstone at Meteor Crater, Arizona. This natural occurrence has important bearing on the recognition of meteorite impact craters in quartz-bearing geologic formations.

  3. Reproduction Efficiency and Health Traits in Dorper, White Dorper, and Tsigai Sheep Breeds under Temperate European Conditions.

    PubMed

    Gavojdian, D; Budai, C; Cziszter, L T; Csizmar, N; Javor, A; Kusza, S

    2015-04-01

    The objective of the current pilot study was to evaluate the reproductive performance and health indicators in Dorper, White Dorper, and Tsigai breed ewes managed semi-intensively under European temperate conditions. A total of 544 ewe-year units were observed, with ewes (ranging from 1.5 to 8 years of age) managed under identical rearing conditions for a period of two consecutive production cycles (2012 through 2013 and 2013 through 2014). In general, significant (p≤0.001) genotype-related disparities were found in occurrence rates for all health parameters taken into study. Clinical mastitis incidence was significantly lower (p≤0.05) in Dorper (9.4%) and White Dorper (10.8%) breeds compared to that of Tsigai ewes (17.4%). Significant differences (p≤0.05) for lameness were found between Dorper and Tsigai breeds, with occurrence rates of 8.0% and 2.9%, respectively. Incidence for pneumonia and abortion was not influenced (p>0.05) by the ewes' genotype. Litter size was significantly lower (p≤0.05) in White Dorper breed than for Dorper and Tsigai ewes, of 1.21, 1.40, and 1.45, respectively. Conception rates and lambs survival were not affected (p>0.05) by genotype. Results suggest that South African Dorper and White Dorper sheep breeds have adapted well to the specific rearing conditions. PMID:25656193

  4. Iberian origins of New World horse breeds.

    PubMed

    Luís, Cristina; Bastos-Silveira, Cristiane; Cothran, E Gus; Oom, Maria do Mar

    2006-01-01

    Fossil records, archaeological proofs, and historical documents report that horses persisted continuously in the Iberian Peninsula since the Pleistocene and were taken to the American continent (New World) in the 15th century. To investigate the variation within the mitochondrial DNA (mtDNA) control region of Iberian and New World horse breeds, to analyze their relationships, and to test the historical origin of New World horses, a total of 153 samples, representing 30 Iberian and New World breeds, were analyzed by sequencing mtDNA control region fragments. Fifty-four haplotypes were found and assigned to seven haplogroups. Reduced levels of variation found for the Menorquina, Sorraia, and Sulphur Mustang breeds are consistent with experienced bottlenecks or limited number of founders. For all diversity indices, Iberian breeds showed higher diversity values than South American and North American breeds. Although, the results show that the Iberian and New World breeds stem from multiple origins, we present a set of genetic data revealing a high frequency of Iberian haplotypes in New World breeds, which is consistent with historical documentation. PMID:16489143

  5. Advances in Japanese pear breeding in Japan.

    PubMed

    Saito, Toshihiro

    2016-01-01

    The Japanese pear (Pyrus pyrifolia Nakai) is one of the most widely grown fruit trees in Japan, and it has been used throughout Japan's history. The commercial production of pears increased rapidly with the successive discoveries of the chance seedling cultivars 'Chojuro' and 'Nijisseiki' around 1890, and the development of new cultivars has continued since 1915. The late-maturing, leading cultivars 'Niitaka' and 'Shinko' were released during the initial breeding stage. Furthermore, systematic breeding by the Horticultural Research Station (currently, NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization (NIFTS)) began in 1935, which mainly aimed to improve fruit quality by focusing on flesh texture and black spot disease resistance. To date, 22 cultivars have been released, including 'Kosui', 'Hosui', and 'Akizuki', which are current leading cultivars from the breeding program. Four induced mutant cultivars induced by gamma irradiation, which exhibit some resistance to black spot disease, were released from the Institute of Radiation Breeding. Among these cultivars, 'Gold Nijisseiki' has become a leading cultivar. Moreover, 'Nansui' from the Nagano prefectural institute breeding program was released, and it has also become a leading cultivar. Current breeding objectives at NIFTS mainly combine superior fruit quality with traits related to labor and cost reduction, multiple disease resistance, or self-compatibility. Regarding future breeding, marker-assisted selection for each trait, QTL analyses, genome-wide association studies, and genomic selection analyses are currently in progress. PMID:27069390

  6. Recoil Based Fuel Breeding Fuel Structure

    SciTech Connect

    Popa-Simil, Liviu

    2008-07-01

    Nuclear transmutation reactions are based on the absorption of a smaller particle as neutron, proton, deuteron, alpha, etc. The resulting compound nucleus gets out of its initial lattice mainly by taking the recoil, also with help from its sudden change in chemical properties. The recoil implantation is used in correlation with thin and ultra thin materials mainly for producing radiopharmaceuticals and ultra-thin layer radioactive tracers. In nuclear reactors, the use of nano-particulate pellets could facilitate the recoil implantation for breeding, transmutation and partitioning purposes. Using enriched {sup 238}U or {sup 232}Th leads to {sup 239}Pu and {sup 233}U production while using other actinides as {sup 240}Pu, {sup 241}Am etc. leads to actinide burning. When such a lattice is immersed into a radiation resistant fluid (water, methanol, etc.), the recoiled product is transferred into the flowing fluid and removed from the hot area using a concentrator/purifier, preventing the occurrence of secondary transmutation reactions. The simulation of nuclear collision and energy transfer shows that the impacted nucleus recoils in the interstitial space creating a defect or lives small lattices. The defect diffuses, and if no recombination occurs it stops at the lattices boundaries. The nano-grains are coated in thin layer to get a hydrophilic shell to be washed by the collection liquid the particle is immersed in. The efficiency of collection depends on particle magnitude and nuclear reaction channel parameters. For {sup 239}Pu the direct recoil extraction rate is about 70% for {sup 238}UO{sub 2} grains of 5 nm diameters and is brought up to 95% by diffusion due to {sup 239}Neptunium incompatibility with Uranium dioxide lattice. Particles of 5 nm are hard to produce so a structure using particles of 100 nm have been tested. The particles were obtained by plasma sputtering in oxygen atmosphere. A novel effect as nano-cluster radiation damage robustness and cluster

  7. Molecular structure in peripheral dog breeds: Portuguese native breeds as a case study.

    PubMed

    Pires, A E; Amorim, I R; Ginja, C; Gomes, M; Godinho, I; Simões, F; Oom, M; Petrucci-Fonseca, F; Matos, J; Bruford, M W

    2009-08-01

    Genetic variability in purebred dogs is known to be highly structured, with differences among breeds accounting for approximately 30% of the genetic variation. However, analysis of the genetic structure in non-cosmopolitan breeds and local populations is still limited. Nine Portuguese native dog breeds, and other peripheral dog populations (five) with regional affinities, were characterized using 16 microsatellites and 225 amplified fragment length polymorphism (AFLP) markers, and the pattern of genetic differentiation was investigated. Although the level of breed differentiation detected is below that of other dog breeds, there is in most cases a correlation between breed affiliation and molecular structure. AFLP markers and Bayesian clustering methods allowed an average of 73.1% of individuals to be correctly assigned to source populations, providing robust genotypic assessment of breed affiliation. A geographical genetic structure was also detected, which suggests a limited influence of African dogs on the Iberian breeds. The sampling effect on the estimation of population structure was evaluated and there was a 2.2% decrease in genetic differentiation among breeds when working animals were included. Genetic diversity of stray dogs was also assessed and there is no evidence that they pose a threat to the preservation of the gene pool of native dog breeds. PMID:19298456

  8. Breeding season survival and breeding incidence of female Mottled Ducks on the upper Texas gulf coast

    USGS Publications Warehouse

    Rigby, Elizabeth A.; Haukos, David A.

    2012-01-01

    Previous Mottled Duck (Anas fulvigula) studies suggested that high female breeding season survival may be caused by low nesting effort, but few breeding season estimates of survival associated with nesting effort exist on the western Gulf Coast. Here, breeding season survival (N = 40) and breeding incidence (N = 39) were estimated for female Mottled Ducks on the upper Texas coast, 2006–2008. Females were fitted with backpack radio transmitters and visually relocated every 3–4 days. Weekly survival was estimated using the Known Fate procedure of program MARK with breeding incidence estimated as the annual proportion of females observed nesting or with broods. The top-ranked survival model included a body mass covariate and held weekly female survival constant across weeks and years (SW = 0.986, SE = 0.006). When compared to survival across the entire year estimated from previous band recovery and age ratio analysis, survival rate during the breeding season did not differ. Breeding incidence was well below 100% in all years and highly variable among years (15%–63%). Breeding season survival and breeding incidence were similar to estimates obtained with implant transmitters from the mid-coast of Texas. The greatest breeding incidence for both studies occurred when drought indices indicated average environmental moisture during the breeding season. The observed combination of low breeding incidence and high breeding season survival support the hypothesis of a trade-off between the ecological cost of nesting effort and survival for Mottled Duck females. Habitat cues that trigger nesting are unknown and should be investigated.

  9. Breeding behavior of immature mourning doves

    USGS Publications Warehouse

    Irby, H.D.; Blankenship, L.H.

    1966-01-01

    Some immature mourning doves (Zenaidura mncroura) are capable of breeding in their first (calendar) year of life. The breeding activities of immatures observed in this study included calling, copulating, and nesting. Development of sexual structures such as cloacal papillae, oviduct openings, and gonads was also regarded as evidence of breeding potential. Immatures were identified principally by white-tipped wing coverts. Sexes were distinguished by behavioral characteristics. Males coo, perform flights, carry nest material, and attend nests during the day and females attend nests at night. Immatures were involved in at least ten nestings on two areas near Tucson, Arizona, in 1963. Five young fledged from these nests.

  10. First charge breeding results at CARIBU EBIS

    NASA Astrophysics Data System (ADS)

    Kondrashev, S.; Barcikowski, A.; Dickerson, C.; Ostroumov, P. N.; Sharamentov, S.; Vondrasek, R.; Pikin, A.

    2015-01-01

    The Electron Beam Ion Source (EBIS) developed to breed CARIBU radioactive beams at ATLAS is currently in the off-line commissioning stage. The beam commissioning is being performed using a low emittance surface ionization source producing singly-charged cesium ions. The primary goal of the off-line commissioning is the demonstration of high-efficiency charge breeding in the pulsed injection mode. An overview of the final design of the CARIBU EBIS charge breeder, the off-line commissioning installation and the first results on charge breeding of stable cesium ions are presented and discussed.

  11. First charge breeding results at CARIBU EBIS

    SciTech Connect

    Kondrashev, S. Barcikowski, A. Dickerson, C. Ostroumov, P. N. Sharamentov, S. Vondrasek, R.; Pikin, A.

    2015-01-09

    The Electron Beam Ion Source (EBIS) developed to breed CARIBU radioactive beams at ATLAS is currently in the off-line commissioning stage. The beam commissioning is being performed using a low emittance surface ionization source producing singly-charged cesium ions. The primary goal of the off-line commissioning is the demonstration of high-efficiency charge breeding in the pulsed injection mode. An overview of the final design of the CARIBU EBIS charge breeder, the off-line commissioning installation and the first results on charge breeding of stable cesium ions are presented and discussed.

  12. Breeding bald eagles in captivity

    USGS Publications Warehouse

    Maestrelli, J.R.; Wiemeyer, Stanley N.

    1975-01-01

    A 7-year-old female Bald Eagle from Alabama was paired with a 4-year-old Alaskan male in a large flight pen during December 1969. Both birds were free of physical defects when originally placed in the pen but the female was blind in one eye prior to the 1973 breeding season.....Nesting first occurred during 1971 when at least two eggs were laid; all but one, which showed no sign of embryonic development after being incubated for 56 days, were broken by the adult birds. Two of three eggs laid in 1972 hatched. Both young died a few days after hatching following a period of inclement weather. Three eggs were laid and hatched during 1973. Antagonism between the nestlings was observed soon after hatching and may have been responsible for the unobserved death of one nestling, two days after the third young hatched. The two remaining young were raised by the adult birds and eventually left the nest 85 days after the first egg hatched. Incubation periods for the 1972-73 clutches averaged 35 days. No renesting attempts were made by the eagles during the 3.year period.

  13. Breeding erect plant type sweetpotato lines using cross breeding and gamma-ray irradiation

    PubMed Central

    Kuranouchi, Toshikazu; Kumazaki, Tadashi; Kumagai, Toru; Nakatani, Makoto

    2016-01-01

    Few sweetpotato (Ipomoea batatas Lam.) cultivars with erect plant type are available despite their advantages over spreading type, such as simplicity of cultivation and ability to adapt to limited space. One of the reasons is insufficiency of their agronomic characteristics for table use. So, it is important to overcome these drawbacks of ER-type lines. We attempted to breed new erect plant type sweetpotato lines having good agronomic traits using cross breeding and mutation breeding with gamma-ray irradiation. With cross breeding we successfully developed new erect plant type lines with almost equal levels of yield as compared to ‘Beniazuma’, one of the leading cultivars in Japan. However, mutation breeding failed to develop any promising lines because we could not obtain distinct erect plant type lines. In the future larger numbers of plants should be used for mutation breeding, and irradiation methods should be improved. PMID:27436957

  14. Breeding erect plant type sweetpotato lines using cross breeding and gamma-ray irradiation.

    PubMed

    Kuranouchi, Toshikazu; Kumazaki, Tadashi; Kumagai, Toru; Nakatani, Makoto

    2016-06-01

    Few sweetpotato (Ipomoea batatas Lam.) cultivars with erect plant type are available despite their advantages over spreading type, such as simplicity of cultivation and ability to adapt to limited space. One of the reasons is insufficiency of their agronomic characteristics for table use. So, it is important to overcome these drawbacks of ER-type lines. We attempted to breed new erect plant type sweetpotato lines having good agronomic traits using cross breeding and mutation breeding with gamma-ray irradiation. With cross breeding we successfully developed new erect plant type lines with almost equal levels of yield as compared to 'Beniazuma', one of the leading cultivars in Japan. However, mutation breeding failed to develop any promising lines because we could not obtain distinct erect plant type lines. In the future larger numbers of plants should be used for mutation breeding, and irradiation methods should be improved. PMID:27436957

  15. Equine post-breeding endometritis: A review.

    PubMed

    Maischberger, E; Irwin, Ja; Carrington, Sd; Duggan, Ve

    2008-01-01

    The deposition of semen, bacteria and debris in the uterus of the mare after breeding normally induces a self-limiting endometritis. The resultant fluid and inflammatory products are cleared by 48 hours post cover. Mares that are susceptible to persistent post-breeding endometritis (PPBEM) have impaired uterine defence and clearance mechanisms, making them unable to resolve this inflammation within the normal time. This persists beyond 48 hours post-breeding and causes persistent fluid accumulation within the uterus. Mares with PPBEM have an increased rate of embryonic loss and a lower overall pregnancy rate than those without the condition. To enhance conception rates, mares at high risk need optimal breeding management as well as early diagnosis, followed by the most appropriate treatment. This article reviews the pathogenesis, diagnosis and treatment of PPBEM and the management of affected mares. PMID:21851709

  16. Analysis of breed effects on semen traits in light horse, warmblood, and draught horse breeds.

    PubMed

    Gottschalk, Maren; Sieme, Harald; Martinsson, Gunilla; Distl, Ottmar

    2016-05-01

    In the present study, systematic effects on semen quality traits were investigated in 381 stallions representing 22 breeds. All stallions were used for AI either at the Lower Saxon National Stud Celle or the North Rhine-Westphalian National Stud Warendorf. A total of 71,078 fresh semen reports of the years 2001 to 2014 were edited for analysis of gel-free volume, sperm concentration, total number of sperm, progressive motility, and total number of progressively motile sperm. Breed differences were studied for warmblood and light horse breeds of both national studs (model I) and for warmblood breeds and the draught horse breed Rhenish German Coldblood from the North Rhine-Westphalian National stud (model II) using mixed model procedures. The fixed effects of age class, year, and month of semen collection had significant influences on all semen traits in both analyses. A significant influence of the horse breed was found for all semen traits but gel-free volume in both statistical models. Comparing warmblood and light horse stallions of both national studs, we observed highest sperm concentrations, total numbers of sperm, and total numbers of progressively motile sperm in Anglo-Arabian stallions. The draught horse breed Rhenish German Coldblood had the highest least squares means for gel-free volume, whereas all other investigated semen traits were significantly lower in this breed compared to the warmblood stallions under study. The variance components among stallions within breeds were significant for all semen traits and accounted for 40% to 59% of the total variance. The between-breed-variance among stallions was not significant underlining the similar size of the random stallion effect in each of the horse breeds analyzed here. In conclusion, breed and stallion are accounting for a significant proportion of the variation in semen quality. PMID:26893165

  17. Multiple trait genetic evaluation of clinical mastitis in three dairy cattle breeds.

    PubMed

    Govignon-Gion, A; Dassonneville, R; Baloche, G; Ducrocq, V

    2016-04-01

    In 2010, a routine genetic evaluation on occurrence of clinical mastitis in three main dairy cattle breeds-- Montbéliarde (MO), Normande (NO) and Holstein (HO)--was implemented in France. Records were clinical mastitis events reported by farmers to milk recording technicians and the analyzed trait was the binary variable describing the occurrence of a mastitis case within the first 150 days of the first three lactations. Genetic parameters of clinical mastitis were estimated for the three breeds. Low heritability estimates were found: between 2% and 4% depending on the breed. Despite its low heritability, the trait exhibits genetic variation so efficient genetic improvement is possible. Genetic correlations with other traits were estimated, showing large correlations (often>0.50, in absolute value) between clinical mastitis and somatic cell score (SCS), longevity and some udder traits. Correlation with milk yield was moderate and unfavorable (ρ=0.26 to 0.30). High milking speed was genetically associated with less mastitis in MO (ρ=-0.14) but with more mastitis in HO (ρ=0.18). A two-step approach was implemented for routine evaluation: first, a univariate evaluation based on a linear animal model with permanent environment effect led to pre-adjusted records (defined as records corrected for all non-genetic effects) and associated weights. These data were then combined with similar pre-adjusted records for others traits in a multiple trait BLUP animal model. The combined breeding values for clinical mastitis obtained are the official (published) ones. Mastitis estimated breeding values (EBV) were then combined with SCSs EBV into an udder health index, which receives a weight of 14.5% to 18.5% in the French total merit index (ISU) of the three breeds. Interbull genetic correlations for mastitis occurrence were very high (ρ=0.94) with Nordic countries, where much stricter recording systems exist reflecting a satisfactory quality of phenotypes as reported by the

  18. Breeding laboratory cats during artificially induced estrus.

    PubMed

    Cline, E M; Jennings, L L; Sojka, N J

    1980-12-01

    Mature female cats of known reproductive history were randomly divided into groups for natural breeding or mating following hormonal induction of estrus. Treatment with a single injection of 100 international units of pregnant mares' serum followed in 7 days by 50 international units of human chorionic gonadotropin produced results comparable to natural breeding. Daily injections of pregnant mares' serum (300-500 international units total) resulted in fewer successful pregnancies and adversely affected the ability of kittens to survive to weaning. PMID:7464025

  19. Large forest patches promote breeding success of a terrestrial mammal in urban landscapes.

    PubMed

    Soga, Masashi; Koike, Shinsuke

    2013-01-01

    Despite a marked increase in the focus toward biodiversity conservation in fragmented landscapes, studies that confirm species breeding success are scarce and limited. In this paper, we asked whether local (area of forest patches) and landscape (amount of suitable habitat surrounding of focal patches) factors affect the breeding success of raccoon dogs (Nyctereutes procyonoides) in Tokyo, Central Japan. The breeding success of raccoon dogs is easy to judge as adults travel with pups during the breeding season. We selected 21 forest patches (3.3-797.8 ha) as study sites. In each forest patch, we used infra-red-triggered cameras for a total of 60 camera days per site. We inspected each photo to determine whether it was of an adult or a pup. Although we found adult raccoon dogs in all 21 forest patches, pups were found only in 13 patches. To estimate probability of occurrence and detection for raccoon in 21 forest fragments, we used single season site occupancy models in PRESENCE program. Model selection based on AIC and model averaging showed that the occupancy probability of pups was positively affected by patch area. This result suggests that large forests improve breeding success of raccoon dogs. A major reason for the low habitat value of small, isolated patches may be the low availability of food sources and the high risk of being killed on the roads in such areas. Understanding the effects of local and landscape parameters on species breeding success may help us to devise and implement effective long-term conservation and management plans. PMID:23300951

  20. Large Forest Patches Promote Breeding Success of a Terrestrial Mammal in Urban Landscapes

    PubMed Central

    Soga, Masashi; Koike, Shinsuke

    2013-01-01

    Despite a marked increase in the focus toward biodiversity conservation in fragmented landscapes, studies that confirm species breeding success are scarce and limited. In this paper, we asked whether local (area of forest patches) and landscape (amount of suitable habitat surrounding of focal patches) factors affect the breeding success of raccoon dogs (Nyctereutes procyonoides) in Tokyo, Central Japan. The breeding success of raccoon dogs is easy to judge as adults travel with pups during the breeding season. We selected 21 forest patches (3.3–797.8 ha) as study sites. In each forest patch, we used infra-red-triggered cameras for a total of 60 camera days per site. We inspected each photo to determine whether it was of an adult or a pup. Although we found adult raccoon dogs in all 21 forest patches, pups were found only in 13 patches. To estimate probability of occurrence and detection for raccoon in 21 forest fragments, we used single season site occupancy models in PRESENCE program. Model selection based on AIC and model averaging showed that the occupancy probability of pups was positively affected by patch area. This result suggests that large forests improve breeding success of raccoon dogs. A major reason for the low habitat value of small, isolated patches may be the low availability of food sources and the high risk of being killed on the roads in such areas. Understanding the effects of local and landscape parameters on species breeding success may help us to devise and implement effective long-term conservation and management plans. PMID:23300951

  1. Mate fidelity and breeding site tenacity in a monogamous sandpiper, the black turnstone

    USGS Publications Warehouse

    Handel, C.M.; Gill, R.E., Jr.

    2000-01-01

    We examined the relationship between mate fidelity and breeding site tenacity during a 5-year study of the black turnstone, Arenaria melanocephala, a socially monogamous sandpiper breeding in subarctic Alaska. We tested the predictions of several hypotheses regarding the incidence of divorce and the benefits of fidelity to mate and breeding site. Interannual return rates to the breeding grounds (88% for males, 79% for females) were among the highest yet recorded for any scolopacid sandpiper, and 88% of returning birds nested on their previous year's territory. The annual divorce rate was only 11%, and mate fidelity was significantly linked to fidelity to territory but independent of sex and year. Males arrived in spring significantly earlier than their mates and interannual fidelity was influenced by the relative timing of arrival of pair members. Reunited pairs had significantly higher fledging success than new pairs formed after death or divorce. The incidence of divorce was unrelated to reproductive success the previous year, although birds nested significantly further away after failure than after a successful nesting attempt. Sightings of marked individuals suggested that members of pairs do not winter together, and breeding site tenacity provides a mechanism through which pair members can reunite. We reject the 'incompatibility' hypothesis for divorce in turnstones, and our data contradict predictions of the 'better option' hypothesis. Alternatively, we propose the 'bet-hedging' hypothesis to explain the occurrence of divorce, which transpires when an individual pairs with a new mate to avoid the cost of waiting for a previous mate to return. Such costs can include remaining unmated, if the former mate has died, or experiencing lower reproductive success because of delayed breeding.

  2. Mate fidelity and breeding site tenacity in a monogamous sandpiper, the black turnstone.

    PubMed

    Handel; Gill

    2000-10-01

    We examined the relationship between mate fidelity and breeding site tenacity during a 5-year study of the black turnstone, Arenaria melanocephala, a socially monogamous sandpiper breeding in subArctic Alaska. We tested the predictions of several hypotheses regarding the incidence of divorce and the benefits of fidelity to mate and breeding site. Interannual return rates to the breeding grounds (88% for males, 79% for females) were among the highest yet recorded for any scolopacid sandpiper, and 88% of returning birds nested on their previous year's territory. The annual divorce rate was only 11%, and mate fidelity was significantly linked to fidelity to territory but independent of sex and year. Males arrived in spring significantly earlier than their mates and interannual fidelity was influenced by the relative timing of arrival of pair members. Reunited pairs had significantly higher fledging success than new pairs formed after death or divorce. The incidence of divorce was unrelated to reproductive success the previous year, although birds nested significantly further away after failure than after a successful nesting attempt. Sightings of marked individuals suggested that members of pairs do not winter together, and breeding site tenacity provides a mechanism through which pair members can reunite. We reject the 'incompatibility' hypothesis for divorce in turnstones, and our data contradict predictions of the 'better option' hypothesis. Alternatively, we propose the 'bet-hedging' hypothesis to explain the occurrence of divorce, which transpires when an individual pairs with a new mate to avoid the cost of waiting for a previous mate to return. Such costs can include remaining unmated, if the former mate has died, or experiencing lower reproductive success because of delayed breeding. Copyright 2000 The Association for the Study of Animal Behaviour. PMID:11032650

  3. Skeletal muscle transcriptional profiles in two Italian beef breeds, Chianina and Maremmana, reveal breed specific variation.

    PubMed

    Bongiorni, S; Gruber, C E M; Chillemi, G; Bueno, S; Failla, S; Moioli, B; Ferrè, F; Valentini, A

    2016-04-01

    Chianina and Maremmana breeds play an important role in the Italian cattle meat market. The Chianina breed is an ancient breed principally raised for draught. Now this breed is the worldwide recognized producer of top quality beef, tasteful and tender, specifically the famous "Florentine steak". The Maremmana characterized by a massive skeletal structure, is a rustic cattle breed selected for adaptability to the marshy land of the Maremma region. We used a high throughput mRNA sequencing to analyze gene expression in muscle tissues of two Italian cattle breeds, Maremmana (MM) and Chianina (CN) with different selection history. We aim to examine the specific genetic contribution of each breed to meat production and quality, comparing the skeletal muscle tissue from Maremmana and Chianina. Most of the differentially expressed genes were grouped in the Glycolysis/Gluconeogenesis pathways. The rate and the extent of post-mortem energy metabolism have a critical effect on the conversion of muscle to meat. Furthermore, we aim at discovering the differences in nucleotide variation between the two breeds which might be attributable to the different history of selection/divergence. In this work we could emphasize the involvement of pathways of post-mortem energy metabolism. Moreover, we detected a collection of coding SNPs which could offer new genomic resources to improve phenotypic selection in livestock breeding program. PMID:26896938

  4. Citrus breeding, genetics and genomics in Japan.

    PubMed

    Omura, Mitsuo; Shimada, Takehiko

    2016-01-01

    Citrus is one of the most cultivated fruits in the world, and satsuma mandarin (Citrus unshiu Marc.) is a major cultivated citrus in Japan. Many excellent cultivars derived from satsuma mandarin have been released through the improvement of mandarins using a conventional breeding method. The citrus breeding program is a lengthy process owing to the long juvenility, and it is predicted that marker-assisted selection (MAS) will overcome the obstacle and improve the efficiency of conventional breeding methods. To promote citrus molecular breeding in Japan, a genetic mapping was initiated in 1987, and the experimental tools and resources necessary for citrus functional genomics have been developed in relation to the physiological analysis of satsuma mandarin. In this paper, we review the progress of citrus breeding and genome researches in Japan and report the studies on genetic mapping, expression sequence tag cataloguing, and molecular characterization of breeding characteristics, mainly in terms of the metabolism of bio-functional substances as well as factors relating to, for example, fruit quality, disease resistance, polyembryony, and flowering. PMID:27069387

  5. Citrus breeding, genetics and genomics in Japan

    PubMed Central

    Omura, Mitsuo; Shimada, Takehiko

    2016-01-01

    Citrus is one of the most cultivated fruits in the world, and satsuma mandarin (Citrus unshiu Marc.) is a major cultivated citrus in Japan. Many excellent cultivars derived from satsuma mandarin have been released through the improvement of mandarins using a conventional breeding method. The citrus breeding program is a lengthy process owing to the long juvenility, and it is predicted that marker-assisted selection (MAS) will overcome the obstacle and improve the efficiency of conventional breeding methods. To promote citrus molecular breeding in Japan, a genetic mapping was initiated in 1987, and the experimental tools and resources necessary for citrus functional genomics have been developed in relation to the physiological analysis of satsuma mandarin. In this paper, we review the progress of citrus breeding and genome researches in Japan and report the studies on genetic mapping, expression sequence tag cataloguing, and molecular characterization of breeding characteristics, mainly in terms of the metabolism of bio-functional substances as well as factors relating to, for example, fruit quality, disease resistance, polyembryony, and flowering. PMID:27069387

  6. Application of Genomics Tools to Animal Breeding

    PubMed Central

    Dekkers, Jack C.M.

    2012-01-01

    The main goal in animal breeding is to select individuals that have high breeding values for traits of interest as parents to produce the next generation and to do so as quickly as possible. To date, most programs rely on statistical analysis of large data bases with phenotypes on breeding populations by linear mixed model methodology to estimate breeding values on selection candidates. However, there is a long history of research on the use of genetic markers to identify quantitative trait loci and their use in marker-assisted selection but with limited implementation in practical breeding programs. The advent of high-density SNP genotyping, combined with novel statistical methods for the use of this data to estimate breeding values, has resulted in the recent extensive application of genomic or whole-genome selection in dairy cattle and research to implement genomic selection in other livestock species is underway. The high-density SNP data also provides opportunities to detect QTL and to encover the genetic architecture of quantitative traits, in terms of the distribution of the size of genetic effects that contribute to trait differences in a population. Results show that this genetic architecture differs between traits but that for most traits, over 50% of the genetic variation resides in genomic regions with small effects that are of the order of magnitude that is expected under a highly polygenic model of inheritance. PMID:23115522

  7. Prunus transcription factors: breeding perspectives.

    PubMed

    Bianchi, Valmor J; Rubio, Manuel; Trainotti, Livio; Verde, Ignazio; Bonghi, Claudio; Martínez-Gómez, Pedro

    2015-01-01

    Many plant processes depend on differential gene expression, which is generally controlled by complex proteins called transcription factors (TFs). In peach, 1533 TFs have been identified, accounting for about 5.5% of the 27,852 protein-coding genes. These TFs are the reference for the rest of the Prunus species. TF studies in Prunus have been performed on the gene expression analysis of different agronomic traits, including control of the flowering process, fruit quality, and biotic and abiotic stress resistance. These studies, using quantitative RT-PCR, have mainly been performed in peach, and to a lesser extent in other species, including almond, apricot, black cherry, Fuji cherry, Japanese apricot, plum, and sour and sweet cherry. Other tools have also been used in TF studies, including cDNA-AFLP, LC-ESI-MS, RNA, and DNA blotting or mapping. More recently, new tools assayed include microarray and high-throughput DNA sequencing (DNA-Seq) and RNA sequencing (RNA-Seq). New functional genomics opportunities include genome resequencing and the well-known synteny among Prunus genomes and transcriptomes. These new functional studies should be applied in breeding programs in the development of molecular markers. With the genome sequences available, some strategies that have been used in model systems (such as SNP genotyping assays and genotyping-by-sequencing) may be applicable in the functional analysis of Prunus TFs as well. In addition, the knowledge of the gene functions and position in the peach reference genome of the TFs represents an additional advantage. These facts could greatly facilitate the isolation of genes via QTL (quantitative trait loci) map-based cloning in the different Prunus species, following the association of these TFs with the identified QTLs using the peach reference genome. PMID:26124770

  8. Prunus transcription factors: breeding perspectives

    PubMed Central

    Bianchi, Valmor J.; Rubio, Manuel; Trainotti, Livio; Verde, Ignazio; Bonghi, Claudio; Martínez-Gómez, Pedro

    2015-01-01

    Many plant processes depend on differential gene expression, which is generally controlled by complex proteins called transcription factors (TFs). In peach, 1533 TFs have been identified, accounting for about 5.5% of the 27,852 protein-coding genes. These TFs are the reference for the rest of the Prunus species. TF studies in Prunus have been performed on the gene expression analysis of different agronomic traits, including control of the flowering process, fruit quality, and biotic and abiotic stress resistance. These studies, using quantitative RT-PCR, have mainly been performed in peach, and to a lesser extent in other species, including almond, apricot, black cherry, Fuji cherry, Japanese apricot, plum, and sour and sweet cherry. Other tools have also been used in TF studies, including cDNA-AFLP, LC-ESI-MS, RNA, and DNA blotting or mapping. More recently, new tools assayed include microarray and high-throughput DNA sequencing (DNA-Seq) and RNA sequencing (RNA-Seq). New functional genomics opportunities include genome resequencing and the well-known synteny among Prunus genomes and transcriptomes. These new functional studies should be applied in breeding programs in the development of molecular markers. With the genome sequences available, some strategies that have been used in model systems (such as SNP genotyping assays and genotyping-by-sequencing) may be applicable in the functional analysis of Prunus TFs as well. In addition, the knowledge of the gene functions and position in the peach reference genome of the TFs represents an additional advantage. These facts could greatly facilitate the isolation of genes via QTL (quantitative trait loci) map-based cloning in the different Prunus species, following the association of these TFs with the identified QTLs using the peach reference genome. PMID:26124770

  9. The differentiation of the character of solid lesions in the breast in the compression sonoelastography. Part I: The diagnostic value of the ultrasound B-mode imaging in the differentiation diagnostics of solid, focal lesions in the breast in relation to the pathomorphological verification

    PubMed Central

    2012-01-01

    The aim of this study was to evaluate the diagnostic value of the ultrasound B-mode imaging in the differentiation diagnostics of solid lesions in the breast in relation to the pathomorphological verification. From January to July 2010, 375 ultrasound breast examinations were conducted. The study enrolled 80 women aged 17–83, with 99 solid, focal lesions present in breasts, which were qualified for pathomorphological verification on the basis of the ultrasound examination. All patients underwent: the interview, physical examination, ultrasound examination and sonoelastography. The ultrasound features of the lesions, their vascularization patterns in the Doppler examination as well as the adjacent tissues were determined. Next, the focal lesions were categorized according to the BIRADS-US classification. The obtained results were analyzed statistically. In the group of 80 patients, 99 focal, solid lesions in breasts were visualized, including 39 neoplastic, malignant lesions (group I) and 60 lesions of benign nature (group II). The malignant lesions were often characterized by: greater size, irregular shape (34/39), prevalence of the anteroposterior dimension over the lateral-lateral dimension (22/39), acoustic shadowing (20/39), the margins not well-circumscribed (37/39), spiculated margins (16/39) and the presence of calcifications (14/39). The benign lesions were much more often hyper- and isoechogenic (14/60). In group I the lesions more often demonstrated the features of increased vascularization (29/39) and the presence of irregularly shaped vessels (23/29). This vascularization more often originated in the adjacent tissues. In the surroundings of the malignant neoplastic lesions, the presence of edema (16/39) and skin thickening (6/39) occurred more frequently and the abnormal axillary lymph nodes were more often diagnosed. The lesions of group I were assigned to the following BIRADS categories: BIRADS-US 4 (9 lesions) and BIRADS-US 5 (30 lesions). In group

  10. 50 CFR 15.24 - Permits for cooperative breeding.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 1 2013-10-01 2013-10-01 false Permits for cooperative breeding. 15.24... PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.24 Permits for cooperative breeding. (a) Application requirements for permits for cooperative breeding....

  11. 50 CFR 15.24 - Permits for cooperative breeding.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 1 2012-10-01 2012-10-01 false Permits for cooperative breeding. 15.24... PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.24 Permits for cooperative breeding. (a) Application requirements for permits for cooperative breeding....

  12. 50 CFR 15.24 - Permits for cooperative breeding.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 1 2014-10-01 2014-10-01 false Permits for cooperative breeding. 15.24... PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.24 Permits for cooperative breeding. (a) Application requirements for permits for cooperative breeding....

  13. 78 FR 45494 - Plant Breeding Listening Session meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-29

    ... breeding and cultivar development stakeholders. DATES: The Plant Breeding Listening Session will be held... discuss their plant breeding and cultivar development programs and/or their perception of needs and potential improvements in publicly-funded plant breeding and cultivar development research. Following...

  14. [Multivariate prediction of breeding values for canine hip and elbow dysplasia as well as humeral osteochondrosis in the Bernese mountain dog].

    PubMed

    Hartmann, Peter; Stock, Kathrin-Friederike; Distl, Ottmar

    2012-01-01

    The aim of this study was the multivariate prediction of breeding values for canine hip dysplasia (CHD), elbow dysplasia (ED) and humeral osteochondrosis (OCD) for Bernese mountain dogs of the Schweizer Sennenhund-Verein für Deutschland e. V. (SSV). For the analysis the pedigrees of eight generations and radiographic screening results of the birth cohorts from 1995-2008 were used. The number of dogs with scores for CHD was 5513, for ED 5175 and OCD 1240. Breeding values were multivariately predicted using a mixed linear model for CHD, ED and OCD as well as for the occurrence of a fragmented coronoid process of the medial ulna (FCP) and the ED-score without FCP. The pedigree breeding value (eRZWp) which is used as the selection criterion reached a reliability to predict the phenotype of the offspring at 2.8-2.9% for CHD, 2.9% for ED, 1.1% for ED without FCP, 1.8% for FCP and 0.8-1.3% for OCD. The reason for the low predictive value of the eRZW(P) is caused by the very high influence of the own performance of the animal and the very uniform distribution of contributions of the breeding values of the relatives.These results indicate that even a multivariate prediction of breeding values does not lead to a faster progress in breeding against CHD and ED, however, does allow breeding against OCD in the Bernese mountain dog. In comparison to phenotypic selection, there is some improvement in the selection response when using breeding values. Due to the general low predictive power of breeding values better approaches for selection of future breeding animals are urgently warranted to achieve improvements in breeding Bernese mountain dogs. PMID:23045807

  15. Estimating size and composition of biological communities by modeling the occurrence of species

    USGS Publications Warehouse

    Dorazio, R.M.; Royle, J. Andrew

    2005-01-01

    We develop a model that uses repeated observations of a biological community to estimate the number and composition of species in the community. Estimators of community-level attributes are constructed from model-based estimators of occurrence of individual species that incorporate imperfect detection of individuals. Data from the North American Breeding Bird Survey are analyzed to illustrate the variety of ecologically important quantities that are easily constructed and estimated using our model-based estimators of species occurrence. In particular, we compute site-specific estimates of species richness that honor classical notions of species-area relationships. We suggest extensions of our model to estimate maps of occurrence of individual species and to compute inferences related to the temporal and spatial dynamics of biological communities.

  16. Across-breed EPD tables for the year 2011 adjusted to breed differences for birth year of 2009

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Records of F1 and 3-way cross progeny of 18 breeds of sire and maternal grandsire, respectively, were used to estimate differences among the breeds for birth, weaning, and yearling weight and for maternal effects (16 breeds) of weaning weight and among 13 of the 18 breeds for carcass marbling, ribey...

  17. Across-breed EPD tables for the year 2012 adjusted to breed differences for birth year of 2010

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Records of F1 and 3-way cross progeny of 18 breeds of sire and maternal grandsire, respectively, were used to estimate differences among the breeds for birth, weaning, and yearling weight and for maternal effects (16 breeds) of weaning weight and among 13 of the 18 breeds for carcass marbling, ribey...

  18. Across-Breed EPD Tables for the Year 2009 Adjusted to Breed Differences for Birth Year of 2007

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Records of F1 and 3-way cross progeny of 18 breeds of sire and maternal grandsire, respectively, were used to estimate differences among the breeds for birth, weaning, and yearling weight and for maternal effects (16 breeds) of weaning weight and among 11 of the 18 breeds for carcass marbling, ribey...

  19. Across-Breed EPD Tables for the Year 2010 Adjusted to Breed Differences for Birth Year of 2008

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Records of F1 and 3-way cross progeny of 18 breeds of sire and maternal grandsire, respectively, were used to estimate differences among the breeds for birth, weaning, and yearling weight and for maternal effects (16 breeds) of weaning weight and among 13 of the 18 breeds for carcass marbling, ribey...

  20. Across-breed EPD tables for the year 2016 adjusted to breed differences for birth year of 2014

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Records of progeny of 18 breeds were used to estimate differences among the breeds for birth, weaning, and yearling weight and for maternal effects of weaning weight, among 15 of the 18 breeds for carcass marbling and ribeye area and among 14 of the 18 breeds for fat depth and carcass weight. The r...

  1. Occurrence reporting and processing of operations information

    SciTech Connect

    1997-07-21

    DOE O 232.1A, Occurrence Reporting and Processing of Operations Information, and 10 CFR 830.350, Occurrence Reporting and Processing of Operations Information (when it becomes effective), along with this manual, set forth occurrence reporting requirements for Department of Energy (DOE) Departmental Elements and contractors responsible for the management and operation of DOE-owned and -leased facilities. These requirements include categorization of occurrences related to safety, security, environment, health, or operations (``Reportable Occurrences``); DOE notification of these occurrences; and the development and submission of documented follow-up reports. This Manual provides detailed information for categorizing and reporting occurrences at DOE facilities. Information gathered by the Occurrence Reporting and processing System is used for analysis of the Department`s performance in environmental protection, safeguards and security, and safety and health of its workers and the public. This information is also used to develop lessons learned and document events that significantly impact DOE operations.

  2. Factors mediating co-occurrence of an economically valuable introduced fish and its native frog prey.

    PubMed

    Hartman, Rosemary; Pope, Karen; Lawler, Sharon

    2014-06-01

    Habitat characteristics mediate predator-prey coexistence in many ecological systems but are seldom considered in species introductions. When economically important introduced predators are stocked despite known negative impacts on native species, understanding the role of refuges, landscape configurations, and community interactions can inform habitat management plans. We measured these factors in basins with introduced trout (Salmonidae) and the Cascades frog (Rana cascadae) to determine, which are responsible for observed patterns of co-occurrence of this economically important predator and its native prey. Large, vegetated shallows were strongly correlated to co-occurrence, and R. cascadae larvae occur in shallower water when fish are present, presumably to escape predation. The number of nearby breeding sites of R. cascadae was also correlated to co-occurrence, but only when the western toad (Anaxyrus boreas) was present. Because A. boreas larvae are unpalatable to fish and resemble R. cascadae, they may provide protection from trout via Batesian mimicry. Although rescue-effect dispersal from nearby populations may maintain co-occurrence, within-lake factors proved more important for predicting co-occurrence. Learning which factors allow co-occurrence between economically important introduced species and their native prey enables managers to make better-informed stocking decisions. PMID:24372671

  3. Advances in Japanese pear breeding in Japan

    PubMed Central

    Saito, Toshihiro

    2016-01-01

    The Japanese pear (Pyrus pyrifolia Nakai) is one of the most widely grown fruit trees in Japan, and it has been used throughout Japan’s history. The commercial production of pears increased rapidly with the successive discoveries of the chance seedling cultivars ‘Chojuro’ and ‘Nijisseiki’ around 1890, and the development of new cultivars has continued since 1915. The late-maturing, leading cultivars ‘Niitaka’ and ‘Shinko’ were released during the initial breeding stage. Furthermore, systematic breeding by the Horticultural Research Station (currently, NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization (NIFTS)) began in 1935, which mainly aimed to improve fruit quality by focusing on flesh texture and black spot disease resistance. To date, 22 cultivars have been released, including ‘Kosui’, ‘Hosui’, and ‘Akizuki’, which are current leading cultivars from the breeding program. Four induced mutant cultivars induced by gamma irradiation, which exhibit some resistance to black spot disease, were released from the Institute of Radiation Breeding. Among these cultivars, ‘Gold Nijisseiki’ has become a leading cultivar. Moreover, ‘Nansui’ from the Nagano prefectural institute breeding program was released, and it has also become a leading cultivar. Current breeding objectives at NIFTS mainly combine superior fruit quality with traits related to labor and cost reduction, multiple disease resistance, or self-compatibility. Regarding future breeding, marker-assisted selection for each trait, QTL analyses, genome-wide association studies, and genomic selection analyses are currently in progress. PMID:27069390

  4. Colorado quartz: occurrence and discovery

    USGS Publications Warehouse

    Kile, D.E.; Modreski, P.J.; Kile, D.L.

    1991-01-01

    The many varieties and associations of quartz found throughout the state rank it as one of the premier worldwide localities for that species. This paper briefly outlines the historical importance of the mineral, the mining history and the geological setting before discussing the varieties of quartz present, its crystallography and the geological enviroments in which it is found. The latter include volcanic rocks and near surface igneous rocks; pegmatites; metamorphic and plutonic rocks; hydrothermal veins; skarns and sedimentary deposits. Details of the localities and mode of occurrence of smoky quartz, amethyst, milky quartz, rock crystal, rose quartz, citrine, agate and jasper are then given. -S.J.Stone

  5. The Sub-Annual Breeding Cycle of a Tropical Seabird

    PubMed Central

    Reynolds, S. James; Martin, Graham R.; Dawson, Alistair; Wearn, Colin P.; Hughes, B. John

    2014-01-01

    Breeding periodicity allows organisms to synchronise breeding attempts with the most favourable ecological conditions under which to raise offspring. For most animal species, ecological conditions vary seasonally and usually impose an annual breeding schedule on their populations; sub-annual breeding schedules will be rare. We use a 16-year dataset of breeding attempts by a tropical seabird, the sooty tern (Onychoprion fuscatus), on Ascension Island to provide new insights about this classical example of a population of sub-annually breeding birds that was first documented in studies 60 years previously on the same island. We confirm that the breeding interval of this population has remained consistently sub-annual. By ringing >17000 birds and re-capturing a large sample of them at equivalent breeding stages in subsequent seasons, we reveal for the first time that many individual birds also consistently breed sub-annually (i.e. that sub-annual breeding is an individual as well as a population breeding strategy). Ascension Island sooty terns appear to reduce their courtship phase markedly compared with conspecifics breeding elsewhere. Our results provide rare insights into the ecological and physiological drivers of breeding periodicity, indicating that reduction of the annual cycle to just two life-history stages, breeding and moult, is a viable life-history strategy and that moult may determine the minimum time between breeding attempts. PMID:24714514

  6. Miniaturized GPS Tags Identify Non-breeding Territories of a Small Breeding Migratory Songbird

    PubMed Central

    Hallworth, Michael T.; Marra, Peter P.

    2015-01-01

    For the first time, we use a small archival global positioning system (GPS) tag to identify and characterize non-breeding territories, quantify migratory connectivity, and identify population boundaries of Ovenbirds (Seiurus aurocapilla), a small migratory songbird, captured at two widely separated breeding locations. We recovered 15 (31%) GPS tags with data and located the non-breeding territories of breeding Ovenbirds from Maryland and New Hampshire, USA (0.50 ± 0.15 ha, mean ± SE). All non-breeding territories had similar environmental attributes despite being distributed across parts of Florida, Cuba and Hispaniola. New Hampshire and Maryland breeding populations had non-overlapping non-breeding population boundaries that encompassed 114,803 and 169,233 km2, respectively. Archival GPS tags provided unprecedented pinpoint locations and associated environmental information of tropical non-breeding territories. This technology is an important step forward in understanding seasonal interactions and ultimately population dynamics of populations throughout the annual cycle. PMID:26057892

  7. Substorm statistics: Occurrences and amplitudes

    SciTech Connect

    Borovsky, J.E.; Nemzek, R.J.

    1994-05-01

    The occurrences and amplitudes of substorms are statistically investigated with the use of three data sets: the AL index, the Los Alamos 3-satellite geosynchronous energetic-electron measurements, and the GOES-5 and -6 geosynchronous magnetic-field measurements. The investigation utilizes {approximately} 13,800 substorms in AL, {approximately} 1400 substorms in the energetic-electron flux, and {approximately} 100 substorms in the magnetic field. The rate of occurrence of substorms is determined as a function of the time of day, the time of year, the amount of magnetotail bending, the orientation of the geomagnetic dipole, the toward/away configuration of the IMF, and the parameters of the solar wind. The relative roles of dayside reconnection and viscous coupling in the production of substorms are assessed. Three amplitudes are defined for a substorms: the jump in the AL index, the peak of the >30-keV integral electron flux at geosynchronous orbit near midnight, and the angle of rotation of the geosynchronous magnetic field near midnight. The substorm amplitudes are statistically analyzed, the amplitude measurements are cross correlated with each other, and the substorm amplitudes are determined as functions of the solar-wind parameters. Periodically occurring and randomly occurring substorms are analyzed separately. The energetic-particle-flux amplitudes are consistent with unloading and the AL amplitudes are consistent with direct driving plus unloading.

  8. Behavioral profiles of feline breeds in Japan.

    PubMed

    Takeuchi, Yukari; Mori, Yuji

    2009-08-01

    To clarify the behavioral profiles of 9 feline purebreds, 2 Persian subbreeds and the Japanese domestic cat, a questionnaire survey was distributed to 67 small-animal veterinarians. We found significant differences among breeds in all behavioral traits examined except for "inappropriate elimination". In addition, sexual differences were observed in certain behaviors, including "aggression toward cats", "general activity", "novelty-seeking", and "excitability". These behaviors were more common in males than females, whereas "nervousness" and "inappropriate elimination" were rated higher in females. When all breeds were categorized into four groups on the basis of a cluster analysis using the scores of two behavioral trait factors called "aggressiveness/sensitivity" and "vivaciousness", the group including Abyssinian, Russian Blue, Somali, Siamese, and Chinchilla breeds showed high aggressiveness/sensitivity and low vivaciousness. In contrast, the group including the American Shorthair and Japanese domestic cat displayed low aggressiveness/sensitivity and high vivaciousness, and the Himalayan and Persian group showed mild aggressiveness/sensitivity and very low vivaciousness. Finally, the group containing Maine Coon, Ragdoll, and Scottish Fold breeds displayed very low aggressiveness/sensitivity and low vivaciousness. The present results demonstrate that some feline behavioral traits vary by breed and/or sex. PMID:19721357

  9. Lineaments and Mineral Occurrences in Pennsylvania

    NASA Technical Reports Server (NTRS)

    Mcmurtry, G. J.; Petersen, G. W. (Principal Investigator); Kowalik, W. S.; Gold, D. P.

    1975-01-01

    The author has identified the following significant results. A conservative lineament map of Pennsylvania interpreted from ERTS-1 channel 7 (infrared) imagery and Skylab photography was compared with the distribution of known metallic mines and mineral occurrences. Of 383 known mineral occurrences, 116 show a geographical association to 1 km wide lineaments, another 24 lie at the intersection of two lineaments, and one lies at the intersection of three lineaments. The Perkiomen Creek lineament in the Triassic Basin is associated with 9 Cu-Fe occurrences. Six Pb-Zn occurrences are associated with the Tyrone-Mount Union lineament. Thirteen other lineaments are associated with 3, 4, or 5 mineral occurrences each.

  10. Male and female breeding strategies in a cooperative primate.

    PubMed

    Yamamoto, Maria Emilia; Araujo, Arrilton; Arruda, Maria de Fatima; Lima, Ana Karinne Moreira; Siqueira, Jose de Oliveira; Hattori, Wallisen Tadashi

    2014-11-01

    Marmosets are cooperative breeders organized as extended family groups, but breeding is generally restricted to a single pair. Breeding competition is fierce in female marmosets; males, on the other hand, show low levels of intragroup aggression. We investigated male and female breeding strategies and the resulting reproductive output in 9 wild groups. Reproductive output, tenure of breeding animals, identification of the breeding system, breeding position replacements, migration and infanticide were recorded; also, we recorded grooming and aggression. Replacement of the breeding male or female was observed on nine occasions. On four occasions, the son of the breeding male inherited the breeding post, but we never observed inheritance of a breeding post by a daughter. Mostly, females attained a breeding post by immigrating to a group that had a breeding vacancy. Our results showed that Callithrix jacchus males and females use different strategies to attain a breeding position and maintain it for as long as possible. These strategies prolong the tenure of the breeding position, which is the best way to produce a large number of offspring. This article is part of a Special Issue entitled: Neotropical Behaviour. PMID:25010563

  11. Haploids: Constraints and opportunities in plant breeding.

    PubMed

    Dwivedi, Sangam L; Britt, Anne B; Tripathi, Leena; Sharma, Shivali; Upadhyaya, Hari D; Ortiz, Rodomiro

    2015-11-01

    The discovery of haploids in higher plants led to the use of doubled haploid (DH) technology in plant breeding. This article provides the state of the art on DH technology including the induction and identification of haploids, what factors influence haploid induction, molecular basis of microspore embryogenesis, the genetics underpinnings of haploid induction and its use in plant breeding, particularly to fix traits and unlock genetic variation. Both in vitro and in vivo methods have been used to induce haploids that are thereafter chromosome doubled to produce DH. Various heritable factors contribute to the successful induction of haploids, whose genetics is that of a quantitative trait. Genomic regions associated with in vitro and in vivo DH production were noted in various crops with the aid of DNA markers. It seems that F2 plants are the most suitable for the induction of DH lines than F1 plants. Identifying putative haploids is a key issue in haploid breeding. DH technology in Brassicas and cereals, such as barley, maize, rice, rye and wheat, has been improved and used routinely in cultivar development, while in other food staples such as pulses and root crops the technology has not reached to the stage leading to its application in plant breeding. The centromere-mediated haploid induction system has been used in Arabidopsis, but not yet in crops. Most food staples are derived from genomic resources-rich crops, including those with sequenced reference genomes. The integration of genomic resources with DH technology provides new opportunities for the improving selection methods, maximizing selection gains and accelerate cultivar development. Marker-aided breeding and DH technology have been used to improve host plant resistance in barley, rice, and wheat. Multinational seed companies are using DH technology in large-scale production of inbred lines for further development of hybrid cultivars, particularly in maize. The public sector provides support to

  12. Age-specific breeding in Emperor Geese

    USGS Publications Warehouse

    Schmutz, J.A.

    2000-01-01

    I studied the frequency with which Emperor Geese (Chen canagica) of known age were observed breeding on the Yukon-Kuskokwim Delta, Alaska. No one- or two-year old geese were observed on nests. Three-year old geese bred at a lower rate than four-year old geese. These data suggest that patterns of age-specific breeding in Emperor Geese are similar to other sympatrically nesting, large bodied geese [Greater White-fronted Geese (Anser albifrons)] but delayed relative to smaller bodied geese [Cackling Canada Geese (Branta canadensis minima) and Pacific Black Brant (B. bernicla nigricans)].

  13. Estimating superpopulation size and annual probability of breeding for pond-breeding salamanders

    USGS Publications Warehouse

    Kinkead, K.E.; Otis, D.L.

    2007-01-01

    It has long been accepted that amphibians can skip breeding in any given year, and environmental conditions act as a cue for breeding. In this paper, we quantify temporary emigration or nonbreeding probability for mole and spotted salamanders (Ambystoma talpoideum and A. maculatum). We estimated that 70% of mole salamanders may skip breeding during an average rainfall year and 90% may skip during a drought year. Spotted salamanders may be more likely to breed, with only 17% avoiding the breeding pond during an average rainfall year. We illustrate how superpopulations can be estimated using temporary emigration probability estimates. The superpopulation is the total number of salamanders associated with a given breeding pond. Although most salamanders stay within a certain distance of a breeding pond for the majority of their life spans, it is difficult to determine true overall population sizes for a given site if animals are only captured during a brief time frame each year with some animals unavailable for capture at any time during a given year. ?? 2007 by The Herpetologists' League, Inc.

  14. To breed or not to breed: a seabird's response to extreme climatic events.

    PubMed

    Cubaynes, Sarah; Doherty, Paul F; Schreiber, E A; Gimenez, Olivier

    2011-04-23

    Intermittent breeding is an important life-history strategy that has rarely been quantified in the wild and for which drivers remain unclear. It may be the result of a trade-off between survival and reproduction, with individuals skipping breeding when breeding conditions are below a certain threshold. Heterogeneity in individual quality can also lead to heterogeneity in intermittent breeding. We modelled survival, recruitment and breeding probability of the red-footed booby (Sula sula), using a 19 year mark-recapture dataset involving more than 11,000 birds. We showed that skipping breeding was more likely in El-Niño years, correlated with an increase in the local sea surface temperature, supporting the hypothesis that it may be partly an adaptive strategy of birds to face the trade-off between survival and reproduction owing to environmental constraints. We also showed that the age-specific probability of first breeding attempt was synchronized among different age-classes and higher in El-Niño years. This result suggested that pre-breeders may benefit from lowered competition with experienced breeders in years of high skipping probabilities. PMID:20943677

  15. Costs Associated with Equine Breeding in Kentucky

    NASA Astrophysics Data System (ADS)

    Walker, Cassandra L.

    There were approximately 9 million horses in the United States having a 102 billion impact on the U.S. economy (AHC, 2005). Over 1 million of those horses were involved in the breeding sector. In Kentucky, nearly 18% of the horse population have been involved in breeding. Managing an equine enterprise can be difficult, particularly given that many who undertake such endeavors do not have a background or education in business management. Kentucky Cooperative Extension has produced interactive spreadsheets to help horse owners better understand the costs associated with owning horses or managing certain equine businesses, including boarding and training operations. However, there has been little support for breeders. Therefore, the objectives of this study were to provide owners with a list of services offered for breeding and the costs associated with those services. Survey questions were created from a list of topics pertinent to equine breeding and from that list of questions, an electronic survey was created. The survey was sent via Qualtrics Survey Software to collect information on stallion and mare management costs as well as expenses related to owning and breeding. Question topics included veterinary and housing costs, management and advertising expenses, and membership fees. A total of 78 farms were selected from the 2013 breeder's listings for the Kentucky Quarter Horse Association (n = 39) and the Kentucky Thoroughbred Farm Managers' Club (n = 26), and other breed association contacts (n = 13). These farms were selected from the lists by outside individuals who were not related to the project. Participants were asked to answer all questions relevant to the farm. After the initial survey distribution, follow-up e-mails and phone calls were conducted in order to answer any questions participants might have had about the survey. Survey response rate was 32.1% (25 of 78 surveys returned). Farms in Kentucky had an average of two farm-owned and two outside

  16. Criteria for selecting replacements at weaning, before breeding, and after breeding.

    PubMed

    Lamb, G Cliff

    2013-11-01

    At weaning, heifers should be considered for replacements based on their dam's previous performance; heifer calving date, age, and weight; and previous exposure to implants. Before breeding, heifers should be selected as replacements based on whether they have attained puberty (determined by a prebreeding examination), do not have abnormal pelvic areas, or fail to meet temperament standards. After breeding, heifers should be selected as replacements if they conceive early in the breeding season, are capable of achieving 85% of their mature weight by calving, and calve at a body condition of 5.5 to 6.0. PMID:24182435

  17. Development and application of biological technologies in fish genetic breeding.

    PubMed

    Xu, Kang; Duan, Wei; Xiao, Jun; Tao, Min; Zhang, Chun; Liu, Yun; Liu, ShaoJun

    2015-02-01

    Fish genetic breeding is a process that remolds heritable traits to obtain neotype and improved varieties. For the purpose of genetic improvement, researchers can select for desirable genetic traits, integrate a suite of traits from different donors, or alter the innate genetic traits of a species. These improved varieties have, in many cases, facilitated the development of the aquaculture industry by lowering costs and increasing both quality and yield. In this review, we present the pertinent literatures and summarize the biological bases and application of selection breeding technologies (containing traditional selective breeding, molecular marker-assisted breeding, genome-wide selective breeding and breeding by controlling single-sex groups), integration breeding technologies (containing cross breeding, nuclear transplantation, germline stem cells and germ cells transplantation, artificial gynogenesis, artificial androgenesis and polyploid breeding) and modification breeding technologies (represented by transgenic breeding) in fish genetic breeding. Additionally, we discuss the progress our laboratory has made in the field of chromosomal ploidy breeding of fish, including distant hybridization, gynogenesis, and androgenesis. Finally, we systematically summarize the research status and known problems associated with each technology. PMID:25595050

  18. Linkage Drag: Implication for Plant Breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Linkage drag is commonly observed in plant breeding, yet the molecular mechanisms controlling this is unclear. The Pi-ta gene, a single copy gene near the centromere region of chromosome 12, confers resistance to races of Magnaporthe oryzae that contain AVR-Pita. The Pi-ta gene in Tetep has been su...

  19. Genomics to feed a switchgrass breeding program

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Development of improved cultivars is one of three pillars, along with sustainable production and efficient conversion, required for dedicated cellulosic bioenergy crops to succeed. Breeding new cultivars is a long, slow process requiring patience, dedication, and motivation to realize gains and adva...

  20. Genetics, Breeding, and Ecology of Reed Canarygrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Reed canarygrass has been an important grass for hay production, soil conservation, and pastures in the USA since the late 1800s. It is tolerant of a wide range of environmental stresses, including drought, heat, and flooding. Breeding new varieties of reed canarygrass began in the 1950s by collec...

  1. Breeding lettuce for fresh-cut processing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Lettuce is increasingly consumed in fresh-cut packaged salads. New cultivars specifically bred for this use can enhance production and processing efficiency and extend shelf life. Cultivars with novel head architectures and leaf traits are being released by private and public breeding programs with ...

  2. Marketing potential of advanced breeding clones

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The accumulation of reducing sugars during cold storage of potato tubers is a serious and costly problem for producers and processors. The degree to which cultivars accumulate reducing sugars during storage determines their processing and market potential. Cultivars or advanced breeding lines with...

  3. MARKETING POTENTIAL OF ADVANCED BREEDING CLONES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The accumulation of reducing sugars during cold storage of potato tubers is a serious and costly problem for producers and processors. The degree to which cultivars accumulate reducing sugars during storage determines their processing and market potential. Cultivars or advanced breeding lines with...

  4. Strawberry breeding selections for postharvest fruit decay

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fruit from the annual replicated yield assessments for the USDA-ARS strawberry (Fragaria ×ananassa Duchesne ex Rozier) breeding program at Beltsville, MD in 2010 were evaluated for postharvest decay development after storage at 5 °C. A statistically significant correlation between percentage decay o...

  5. Impacts of the USDA basic breeding program

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDAs basic sugarcane breeding program began in the mid 1950s with the objective of moving genes from wild sugarcane germplasm into commercial cane. Several releases have been made from this program, but it is a very long process. To date, the pedigree of seven commercial Louisiana varieties can...

  6. Breeding for phytonutrient content; examples from watermelon

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Breeding for high phytonutrient fruits and vegetables can be a fairly straightforward endeavor when the compounds of interest produce a visible effect or the methods for quantifying the compounds simple and inexpensive. Lycopene in tomatoes and watermelon is one such compound, since the amount of r...

  7. A New Breed of Environmental Film

    ERIC Educational Resources Information Center

    Malamud, Randy

    2008-01-01

    In this article, the author reports how today's environmental film festivals feature a new breed of documentary that offer nuanced narratives about intricate technologies. The author relates that the environmental films he grew up with sedately depicted the quiet sublimity of the wilderness. Today's films, the author observes, aim far beyond a…

  8. A brief genomic history of tomato breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Here we report a brief genomic history of tomato breeding by analyzing the genomes of 360 diverse accessions collected all over the world. These included 333 accessions from the red fruited clade (S. pimpinellifolium, S. l. var. cerasiforme, and S. lycopersicum) that represent various geographical o...

  9. Breeding System of Ruellia succulenta Small (Acanthaceae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study examines the breeding system of Ruellia succulenta (Acanthaceae), an herbaceous perennial found in the pine rockland habitat of southern Florida. Hand pollination treatments were performed on 75 plants, 25 from each of three sites. Treatments applied to test plants included: 1) control ...

  10. Interspecific Sorghum Breeding Using S. macrospermum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Grain sorghum [Sorghum bicolor (L.) Moench] has been improved by public and private breeding programs utilizing germplasm mostly from within the species. Different cross-incompatibility mechanisms have prevented its hybridization with species in other sections of the genus. These incompatibilities...

  11. Traditional breeding and cultivar development (potato)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Traditional breeding allows for the genetic ‘reshuffling’ of genes and their recombination into new genotypes that may carry the desired assemblage of resistance and agronomic traits necessary for release as a new cultivar. While molecular biology techniques can be useful for improving upon a weakne...

  12. Determining Ploidy Level in Guayule Breeding Populations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The domestication and cultivation of guayule (Parthenium argentatum Gray) as a perennial natural rubber crop has been intermittent in the southwestern United States, thus its continued genetic improvement through modern plant breeding is vitally needed to realize yield potential and suitability for ...

  13. Validating selective breeding approaches for disease resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Selective breeding of rainbow trout at the USDA/ARS National Center for Cool and Cold Water Aquaculture (NCCCWA) in Leetown, West Virginia is designed to accomplish four goals: 1) define commercially important traits such as disease resistance, growth rate, stress response, and feed efficiency; 2) d...

  14. Biotechnology and apple breeding in Japan.

    PubMed

    Igarashi, Megumi; Hatsuyama, Yoshimichi; Harada, Takeo; Fukasawa-Akada, Tomoko

    2016-01-01

    Apple is a fruit crop of significant economic importance, and breeders world wide continue to develop novel cultivars with improved characteristics. The lengthy juvenile period and the large field space required to grow apple populations have imposed major limitations on breeding. Various molecular biological techniques have been employed to make apple breeding easier. Transgenic technology has facilitated the development of apples with resistance to fungal or bacterial diseases, improved fruit quality, or root stocks with better rooting or dwarfing ability. DNA markers for disease resistance (scab, powdery mildew, fire-blight, Alternaria blotch) and fruit skin color have also been developed, and marker-assisted selection (MAS) has been employed in breeding programs. In the last decade, genomic sequences and chromosome maps of various cultivars have become available, allowing the development of large SNP arrays, enabling efficient QTL mapping and genomic selection (GS). In recent years, new technologies for genetic improvement, such as trans-grafting, virus vectors, and genome-editing, have emerged. Using these techniques, no foreign genes are present in the final product, and some of them show considerable promise for application to apple breeding. PMID:27069388

  15. Biotechnology and apple breeding in Japan

    PubMed Central

    Igarashi, Megumi; Hatsuyama, Yoshimichi; Harada, Takeo; Fukasawa-Akada, Tomoko

    2016-01-01

    Apple is a fruit crop of significant economic importance, and breeders world wide continue to develop novel cultivars with improved characteristics. The lengthy juvenile period and the large field space required to grow apple populations have imposed major limitations on breeding. Various molecular biological techniques have been employed to make apple breeding easier. Transgenic technology has facilitated the development of apples with resistance to fungal or bacterial diseases, improved fruit quality, or root stocks with better rooting or dwarfing ability. DNA markers for disease resistance (scab, powdery mildew, fire-blight, Alternaria blotch) and fruit skin color have also been developed, and marker-assisted selection (MAS) has been employed in breeding programs. In the last decade, genomic sequences and chromosome maps of various cultivars have become available, allowing the development of large SNP arrays, enabling efficient QTL mapping and genomic selection (GS). In recent years, new technologies for genetic improvement, such as trans-grafting, virus vectors, and genome-editing, have emerged. Using these techniques, no foreign genes are present in the final product, and some of them show considerable promise for application to apple breeding. PMID:27069388

  16. Combination solar hothouse and silkworm breeding house

    SciTech Connect

    Vardiashvili, A.B.; Muradov, M.; Kim, V.D.

    1980-01-01

    The basic arrangement is shown for a combination silkworm breeding house and solar hothouse with subsoil irrigation and accumulation of heat; it employs a semicylindrical film covering. The process of accumulation of solar heat in the subsoil pebble stores, in water-heater banks, and in the soil is described.

  17. Breeding for Phytonutrient Enhancement in Potato

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Tubers of 38 native potato cultivars of different taxonomic groups from South America were analyzed to determine The total anthocyanins, total carotenoids and antioxidant values of several groups of breeding clones and varieties were analyzed. Total anthocyanins and an Hydrophilic Oxygen Radical Ab...

  18. Rapid cyling plant breeding in citrus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Resistance or tolerance to huanglongbing (HLB) and other important traits have been identified in several citrus types and relatives and associated markers should be identified soon. What is urgently needed in addition is an accelerated strategy for citrus variety breeding. Identification and use of...

  19. Impacts of the basic breeding program

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDAs basic sugarcane breeding program began in the mid 1950s with the objective of moving genes from wild sugarcane germplasm into commercial cane. Several releases have been made from this program, but it is a very long process. To date, the pedigree of seven commercial Louisiana varieties ca...

  20. Progress toward breeding for Verticillium wilt resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Verticillium wilt is a persistent and serious problem in potato production. Host plant resistance offers an attractive long-term control method. Breeding progress depends on access to germplasm carrying resistance genes. This study was carried out to identify sources of Verticillium wilt resistan...

  1. Progress Toward Breeding for Verticillium Wilt Resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Verticillium wilt is a persistent and serious problem in potato production. Host plant resistance offers an attractive long-term control method. Breeding progress depends on access to germplasm carrying resistance genes. This study was carried out to identify sources of Verticillium wilt resistan...

  2. The USDA/ARS Raisin Breeding Program

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDA/ARS breeding program is developing: 1) natural dry-on-the-vine raisin grape cultivars; 2) powdery mildew resistant raisin grape cultivars; 3) Pierce’s Disease resistant raisin grape cultivars; and 4) raisin grape cultivars with increased anthocyanins for health benefits. A natural dry-on-t...

  3. Marketing Potential of Advanced Breeding Clones

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The accumulation of reducing sugars during cold storage of potato tubers is a serious and costly problem for producers and processors. The degree to which cultivars accumulate reducing sugars during storage determines their processing and market potential. Cultivars or advanced breeding lines with...

  4. Genetics, Genomics and Breeding in Sunflower

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This book is intended to bridge traditional research with modern molecular investigations on sunflower. It begins with basic information about the sunflower plant and germplasm diversity (Chapter 1), followed by classical genetics and traditional breeding (Chapter 2), history and achievement of gen...

  5. Evaluation of the Criollo breed Romosinuano as purebred and crossbred cows with Brahman and Angus in Florida: I. Reproduction and parturition.

    PubMed

    Riley, D G; Chase, C C; Coleman, S W; Olson, T A

    2014-05-01

    The objectives of this work were to compare reproduction and parturition traits of the Criollo breed Romosinuano as straightbred and crossbred cows with Angus and Brahman, to estimate heterosis and direct and maternal genetic breed effects, and to describe calf loss, cow removals from the project, the occurrence of calving difficulty, inadequate calf vigor at birth, and udder problems by cow breed groups. Cows (n = 404) were born from 2002 to 2005. After their first exposure to bulls as young cows, in all subsequent breeding seasons crossbred cows were bred to bulls of the third breed, and straightbred cows were bred to bulls of the other two breeds. Calving records (n = 1,484) from 2005 to 2011 were used to create calving and weaning rate and calving interval (excluding the interval between 2 and 3 yr of age). Final models for these traits included sire breed-dam breed interaction, cow age within year, and random animal effects. Heterosis estimates for Romosinuano-Brahman calving and weaning rate were 0.06 ± 0.02 and 0.07 ± 0.03 (P < 0.05); those for Brahman-Angus were twice as large (0.13 ± 0.03 and 0.14 ± 0.03, respectively; P < 0.001). Estimates of Brahman direct effects on calving and weaning rate were -0.12 ± 0.04 and -0.14 ± 0.05 (P < 0.05); however, Angus direct effects were beneficial for both traits (0.1 ± 0.05, P < 0.05). The effect of heterosis was to reduce calving interval by -49.2 ± 9.9 and -37.2 ± 9.7 d for Romosinuano-Brahman and Brahman-Angus, respectively (P < 0.001). Romosinuano and F1 cows sired by Romosinuano and out of Angus dams had the most occurrences of difficult births as a proportion of cows that calved (0.028 and 0.025, P = 0.04). Angus-sired crossbred cows and Brahman cows had the most occurrences of udder problems as a proportion of lactating cows (0.14 to 0.21, P < 0.04). There were more Brahman-sired cows that died or were culled as a proportion of those cows that began the project (0.1 to 0.28, P < 0.02) than cows in the

  6. Breeding season of wolves, Canis lupus, in relation to latitude

    USGS Publications Warehouse

    Mech, L.D.

    2002-01-01

    A significant relationship was found between Wolf (Canis lupus) breeding dates and latitudes between 12 deg. and 80 deg. N, with Wolves breeding earlier at lower latitudes, probably because of differences in seasonality.

  7. Breeding season of Wolves, Canis lupus, in relation to latitude

    USGS Publications Warehouse

    Mech, L.D.

    2002-01-01

    A significant relationship was found between Wolf (Canis lupus) breeding dates and latitudes between 12?? and 80??N, with Wolves breeding earlier at lower latitudes, probably because of differences in seasonality.

  8. Simulation of charge breeding of rubidium using Monte Carlo charge breeding code and generalized ECRIS model

    SciTech Connect

    Zhao, L.; Cluggish, B.; Kim, J. S.; Pardo, R.; Vondrasek, R.

    2010-02-15

    A Monte Carlo charge breeding code (MCBC) is being developed by FAR-TECH, Inc. to model the capture and charge breeding of 1+ ion beam in an electron cyclotron resonance ion source (ECRIS) device. The ECRIS plasma is simulated using the generalized ECRIS model which has two choices of boundary settings, free boundary condition and Bohm condition. The charge state distribution of the extracted beam ions is calculated by solving the steady state ion continuity equations where the profiles of the captured ions are used as source terms. MCBC simulations of the charge breeding of Rb+ showed good agreement with recent charge breeding experiments at Argonne National Laboratory (ANL). MCBC correctly predicted the peak of highly charged ion state outputs under free boundary condition and similar charge state distribution width but a lower peak charge state under the Bohm condition. The comparisons between the simulation results and ANL experimental measurements are presented and discussed.

  9. Application of Genomic Tools in Plant Breeding

    PubMed Central

    Pérez-de-Castro, A.M.; Vilanova, S.; Cañizares, J.; Pascual, L.; Blanca, J.M.; Díez, M.J.; Prohens, J.; Picó, B.

    2012-01-01

    Plant breeding has been very successful in developing improved varieties using conventional tools and methodologies. Nowadays, the availability of genomic tools and resources is leading to a new revolution of plant breeding, as they facilitate the study of the genotype and its relationship with the phenotype, in particular for complex traits. Next Generation Sequencing (NGS) technologies are allowing the mass sequencing of genomes and transcriptomes, which is producing a vast array of genomic information. The analysis of NGS data by means of bioinformatics developments allows discovering new genes and regulatory sequences and their positions, and makes available large collections of molecular markers. Genome-wide expression studies provide breeders with an understanding of the molecular basis of complex traits. Genomic approaches include TILLING and EcoTILLING, which make possible to screen mutant and germplasm collections for allelic variants in target genes. Re-sequencing of genomes is very useful for the genome-wide discovery of markers amenable for high-throughput genotyping platforms, like SSRs and SNPs, or the construction of high density genetic maps. All these tools and resources facilitate studying the genetic diversity, which is important for germplasm management, enhancement and use. Also, they allow the identification of markers linked to genes and QTLs, using a diversity of techniques like bulked segregant analysis (BSA), fine genetic mapping, or association mapping. These new markers are used for marker assisted selection, including marker assisted backcross selection, ‘breeding by design’, or new strategies, like genomic selection. In conclusion, advances in genomics are providing breeders with new tools and methodologies that allow a great leap forward in plant breeding, including the ‘superdomestication’ of crops and the genetic dissection and breeding for complex traits. PMID:23115520

  10. Breeding productivity of Smith Island black ducks

    USGS Publications Warehouse

    Haramis, G.M.; Jorde, D.G.; Olsen, G.H.; Stotts, D.B.; Harrison, M.K.

    2002-01-01

    We investigated the breeding performance of American black ducks (Anas rubripes) on Smith Island, Chesapeake Bay, to improve our understanding of island black duck breeding ecology and to make management recommendations to enhance productivity. During 1995-96, we implanted 56 female black ducks with 20-g radio transmitters and tracked 35 of the individuals through the breeding season to locate nests, determine nest fate, and identify brood habitat. We also increased preseason banding efforts and compared capture characteristics over 12 years with those from the Deal Island Wildlife Management Area, a banding site on the mainland of Tangier Sound. A low rate of nesting (37%), lack of renesting, and poor hatching success (31%) indicated that island salt marsh habitats present a harsh environment for breeding black ducks. Black ducks located 11 of 13 nests (85%) in black needlerush (Juncus roemerianus) marsh where they were vulnerable to flooding from extreme tides and to egg predators. No nests were found on forested tree hammocks, a feature that distinguishes Smith Island from nearby South Marsh and Bloodsworth Islands. Nest predators included red foxes (Vulpes vulpes), herring gulls (Larus argentams), fish crows (Corvus ossifragus), and, potentially, Norway rats (Rattus norvegicus). Unlike mainland red foxes, foxes radio tracked on Smith Island were found to be capable swimmers and effective low marsh predators. We found shoreline meadows of widgeon grass (Ruppia maritima) to be important foraging sites for black ducks and suspected that the virtual absence of fresh water in this high salinity environment (1217+ ppt) to incur some cost in terms of growth and survival of ducklings. Preseason bandings revealed a high proportion of banded adults and a strong positive correlation in age ratios with the Deal Island banding site. This latter finding strongly suggests a negative universal effect of storm tides on nest success for Tangier Sound black ducks. Management to

  11. Lectin-binding sites on ejaculated stallion sperm during breeding and non-breeding periods.

    PubMed

    Desantis, S; Ventriglia, G; Zizza, S; Nicassio, M; Valentini, L; Di Summa, A; Lacalandra, G M

    2010-05-01

    Stallion sperm from semen collected in Southern Italy during the breeding (June-July) and non-breeding (December-January) periods were analyzed by means of twelve lectins to evaluate the glycoconjugate pattern and to verify whether there are any seasonal differences in the glycosylation pattern of the sperm glycocalyx. The acrosomal cap showed reactivity for Maackia amurensis (MAL II), Sambucus nigra (SNA), Arachis hypogaea (PNA), Glycine max (SBA), Helix pomatia (HPA), Canavalia ensiformis (Con A) Triticum vulgaris (WGA), and Griffonia simplicifolia isolectin II (GSA II) in breeding and non-breeding ejaculated sperm, suggesting the presence of oligosaccharides terminating with Neu5Ac alpha 2,3Gal beta 1,4GlcNAc, Neu5Ac alpha 2,6Gal/GalNAc, with Gal beta 1,3GalNAc, alpha/beta GalNAc and glycans with terminal/internal alpha Man and GlcNAc. During the non-breeding period, the acrosomal cap expressed oligosaccharides terminating with Gal beta 1,4GlcNAc (Ricinus communis(120) affinity) (RCA(120)) and L-Fuc alpha 1,2Gal beta 1,4GlcNAc beta (Ulex europaeus affinity) (UEA I). The equatorial segment placed between the acrosomal cap and post-acrosomal region did not display glycans terminating with GalNAc, GlcNAc, and alpha L-Fuc. The post-acrosomal region of sperm collected in the breeding and non-breeding periods bound Con A, MAL II, SNA, and SBA, thus showing the presence of N-linked oligosaccharides from high-Man content, terminating with Neu5Ac alpha 2,3Gal beta 1,4GlcNAc, Neu5Ac alpha 2,6Gal/GalNAc and GalNAc. In winter, the post-acrosomal region also expressed oligosaccharides terminating with alpha GalNAc, GlcNAc, and L-Fuc alpha 1,2Gal beta 1,4GlcNAc beta (HPA, GSA II, and UEA I staining). The tail of sperm from semen collected during the breeding and non-breeding periods showed a lectin binding pattern similar to the post-acrosomal region, except for the absence of HPA staining in sperm collected during the winter season. These results indicate that the surface of

  12. Black duck-mallard interactions on breeding areas in Maine

    USGS Publications Warehouse

    Longcore, J.R.; Corr, P.O.; McAuley, D.G.

    1987-01-01

    Mallard (Anas platyrhynchos) pairs (2-4) and broods (1-2) have occurred sporadically each year during recent (1977-86) waterfowl investigations in Maine. State-wide brood counts (1956-1986) for 36 wetlands in Maine depict an average increase of 1-3 mallard broods. Broods occurred mostly on man-made impoundments. Numbers of mallards captured during banding (as a percentage of combined mallards, American black ducks [Anas rubripes] and hybrids) have increased from 4.3 to 28.7% in southern Maine, 3.6 to 9.1% in central Maine, and 0.5 to 2.6% in eastern Maine during the last 3 or 4 decades. The percentage of mallards captured in northern Maine in the last decade averaged 11.8%. The occurrence of mallard x black duck hybrids handled during pre-season banding has been variable among decades, but < 2.0% for all the banding sites. Mixed-species pairs, usually a male mallard and a female black duck have been recorded. . Survival of mallard ducklings to fledging (4/brood) approximates that of black ducks, but our sample of broods (N=7) was small. Paired, male, black ducks aggressively drove away intruding mallards and conspecifics. The role of mallard releases and small marsh construction is implicated in the establishment of the 657 mallard pairs estimated as breeding in Maine.

  13. On-off intermittency in earthquake occurrence

    SciTech Connect

    Bottiglieri, M.; Godano, C.

    2007-02-15

    The clustered occurrence of earthquakes is viewed as an intermittent phenomenon, interpreting the clusters of events as chaotic bursts combined to the Poissonian occurrence of background seismicity. In particular, we suggest that it can be interpreted as an example of on-off intermittency. This kind of intermittency is parameter driven and exhibits certain universal statistical properties. The study of a Californian catalogue allows to interpret earthquake occurrence as an on-off intermittent phenomenon. Our results suggest the existence of a branching mechanism in earthquake occurrence well explained by epidemic type models.

  14. Genetic diversity and relationship of Yunnan native cattle breeds and introduced beef cattle breeds.

    PubMed

    Yu, Ying; Lian, Lin-Sheng; Wen, Ji-Kun; Shi, Xian-Wei; Zhu, Fang-Xian; Nie, Long; Zhang, Ya-Ping

    2004-02-01

    In this study, random amplified polymorphic DNA (RAPD) analysis was used to estimate genetic diversity and relationship in 134 samples belonging to two native cattle breeds from the Yunnan province of China (DeHong cattle and DiQing cattle) and four introduced beef cattle breeds (Brahman, Simmental, MurryGrey, and ShortHorn). Ten primers were used, and a total of 84 bands were scored, of which 63 bands (75.0%) were polymorphic. The genetic distance matrix was obtained by proportions of shared fragment. The results indicate that the Yunnnan DeHong cattle breed is closely related to the Brahman (Bos indicus), and the Yunnan DiQing cattle breed is closely related to the Simmental, ShortHorn, and MurryGrey (Bos taurus) breeds. Our results imply that Bos indicus and Bos taurus were the two main origins of Yunnan native cattle. The results also provide the basic genetic materials for conservation of cattle resources and crossbreeding of beef cattle breeds in South China. PMID:15068334

  15. TEMPORAL CHANGES OF GENETIC DIVERSITY IN SUGARCANE BREEDING POPULATIONS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Concerns about decline of genetic diversity in sugarcane (Saccharum spp.) breeding programs need be addressed to define better breeding strategies aimed at achieving greater genetic gains. The objectives of this study were to reconstruct the divergence in the Canal Point breeding populations as temp...

  16. Maternal genealogical patterns of chicken breeds sampled in Europe.

    PubMed

    Lyimo, C M; Weigend, A; Msoffe, P L; Hocking, P M; Simianer, H; Weigend, S

    2015-08-01

    The aim of this study was to investigate the maternal genealogical pattern of chicken breeds sampled in Europe. Sequence polymorphisms of 1256 chickens of the hypervariable region (D-loop) of mitochondrial DNA (mtDNA) were used. Median-joining networks were constructed to establish evolutionary relationships among mtDNA haplotypes of chickens, which included a wide range of breeds with different origin and history. Chicken breeds which have had their roots in Europe for more than 3000 years were categorized by their founding regions, encompassing Mediterranean type, East European type and Northwest European type. Breeds which were introduced to Europe from Asia since the mid-19th century were classified as Asian type, and breeds based on crossbreeding between Asian breeds and European breeds were classified as Intermediate type. The last group, Game birds, included fighting birds from Asia. The classification of mtDNA haplotypes was based on Liu et al.'s (2006) nomenclature. Haplogroup E was the predominant clade among the European chicken breeds. The results showed, on average, the highest number of haplotypes, highest haplotype diversity, and highest nucleotide diversity for Asian type breeds, followed by Intermediate type chickens. East European and Northwest European breeds had lower haplotype and nucleotide diversity compared to Mediterranean, Intermediate, Game and Asian type breeds. Results of our study support earlier findings that chicken breeds sampled in Europe have their roots in the Indian subcontinent and East Asia. This is consistent with historical and archaeological evidence of chicken migration routes to Europe. PMID:26059109

  17. 50 CFR 15.26 - Approval of cooperative breeding programs.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 1 2012-10-01 2012-10-01 false Approval of cooperative breeding programs... WILDLIFE AND PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.26 Approval of cooperative breeding programs. Upon receipt of a complete application, the...

  18. 50 CFR 15.26 - Approval of cooperative breeding programs.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 1 2014-10-01 2014-10-01 false Approval of cooperative breeding programs... WILDLIFE AND PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.26 Approval of cooperative breeding programs. Upon receipt of a complete application, the...

  19. 50 CFR 15.26 - Approval of cooperative breeding programs.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 1 2013-10-01 2013-10-01 false Approval of cooperative breeding programs... WILDLIFE AND PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.26 Approval of cooperative breeding programs. Upon receipt of a complete application, the...

  20. Vulnerability of breeding waterbirds to climate change in the Prairie Pothole Region, U.S.A.

    USGS Publications Warehouse

    Steen, Valerie; Skagen, Susan K.; Noon, Barry R.

    2014-01-01

    The Prairie Pothole Region (PPR) of the north-central U.S. and south-central Canada contains millions of small prairie wetlands that provide critical habitat to many migrating and breeding waterbirds. Due to their small size and the relatively dry climate of the region, these wetlands are considered at high risk for negative climate change effects as temperatures increase. To estimate the potential impacts of climate change on breeding waterbirds, we predicted current and future distributions of species common in the PPR using species distribution models (SDMs). We created regional-scale SDMs for the U.S. PPR using Breeding Bird Survey occurrence records for 1971–2011 and wetland, upland, and climate variables. For each species, we predicted current distribution based on climate records for 1981–2000 and projected future distributions to climate scenarios for 2040–2049. Species were projected to, on average, lose almost half their current habitat (-46%). However, individual species projections varied widely, from +8% (Upland Sandpiper) to -100% (Wilson's Snipe). Variable importance ranks indicated that land cover (wetland and upland) variables were generally more important than climate variables in predicting species distributions. However, climate variables were relatively more important during a drought period. Projected distributions of species responses to climate change contracted within current areas of distribution rather than shifting. Given the large variation in species-level impacts, we suggest that climate change mitigation efforts focus on species projected to be the most vulnerable by enacting targeted wetland management, easement acquisition, and restoration efforts.

  1. Across-breed EPD tables for the year 2008 adjusted to breed differences for birth year of 2006

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Records of F1 and 3-way cross progeny of 16 breeds of sire and maternal grandsire, respectively, were used to estimate differences among the breeds for birth, weaning, and yearling weight and for maternal effects of weaning weight and among 8 of the 16 breeds for carcass marbling, ribeye area, and f...

  2. Invited review: milk protein polymorphisms in cattle: effect on animal breeding and human nutrition.

    PubMed

    Caroli, A M; Chessa, S; Erhardt, G J

    2009-11-01

    The 6 main milk proteins in cattle are encoded by highly polymorphic genes characterized by several nonsynonymous and synonymous mutations, with up to 47 protein variants identified. Such an extensive variation was used for linkage analysis with the description of the casein cluster more than 30 yr ago and has been applied to animal breeding for several years. Casein haplotype effects on productive traits have been investigated considering information on the whole casein complex. Moreover, mutations within the noncoding sequences have been shown to affect the specific protein expression and, as a consequence, milk composition and cheesemaking. Milk protein variants are also a useful tool for breed characterization, diversity, and phylogenetic studies. In addition, they are involved in various aspects of human nutrition. First, the occurrence of alleles associated with a reduced content of different caseins might be exploited for the production of milk with particular nutritional qualities; that is, hypoallergenic milk. On the other hand, the frequency of these alleles can be decreased by selection of sires using simple DNA tests, thereby increasing the casein content in milk used for cheesemaking. Furthermore, the biological activity of peptides released from milk protein digestion can be affected by amino acid exchanges or deletions resulting from gene mutations. Finally, the gene-culture coevolution between cattle milk protein genes and human lactase genes, which has been recently highlighted, is impressive proof of the nonrandom occurrence of milk protein genetic variation over the centuries. PMID:19841193

  3. Breeding population inventories and measures of recruitment

    USGS Publications Warehouse

    Cowardin, L.M.; Blohm, R.J.

    1992-01-01

    In this chapter we review the techniques used to measure two important parameters of waterfowl populations, size of breeding population and recruitment. If waterfowl are to be managed toward goals defined in terms of population sizes such as those in the recently signed North American Waterfowl Management Plan (U.S. Fish and Wildlife Service [USFWS] and Canadian Wildlife Service [CWS] 1986), there must be some measure of population size for the various species. Waterfowl managers usually measure population size during the breeding season, although for some species and in some areas winter inventories may be used. Population size is a function of natality and mortality. Other chapters in this volume deal in detail with the biology of those processes. This chapter discusses procedural aspects of measurement and reviews some of the operational systems that have been used to estimate population size and recruitment, especially in North America.

  4. Breeding bird response to juniper woodland expansion

    USGS Publications Warehouse

    Rosenstock, Steven S.; van Riper, Charles, III

    2001-01-01

    In recent times, pinyon (Pinus spp.)-juniper (Juniperus spp.) woodlands have expanded into large portions of the Southwest historically occupied by grassland vegetation. From 1997a??1998, we studied responses of breeding birds to one-seed juniper (J. monosperma) woodland expansion at 2 grassland study areas in northern Arizona. We sampled breeding birds in 3 successional stages along a grassland-woodland gradient: un-invaded grassland, grassland undergoing early stages of juniper establishment, and developing woodland. Species composition varied greatly among successional stages and was most different between endpoints of the gradient. Ground-nesting grassland species predominated in uninvaded grassland but declined dramatically as tree density increased. Tree- and cavity-nesting species increased with tree density and were most abundant in developing woodland. Restoration of juniper-invaded grasslands will benefit grassland-obligate birds and other wildlife.

  5. [Review of transgenic crop breeding in China].

    PubMed

    Huang, Dafang

    2015-06-01

    The development history and fundamental experience of transgenic crops (Genetically modified crops) breeding in China for near 30 years were reviewed. It was illustrated that a scientific research, development and industrialization system of transgenic crops including gene discovery, transformation, variety breeding, commercialization, application and biosafety assessment has been initially established which was few in number in the world. The research innovative capacity of transgenic cotton, rice and corn has been lifted. The research features as well as relative advantages have been initially formed. The problems and challenges of transgenic crop development were discussed. In addition, three suggestions of promoting commercialization, speeding up implementation of the Major National Project of GM Crops, and enhancing science communication were made. PMID:26672365

  6. UMTRA project list of reportable occurrences

    SciTech Connect

    Not Available

    1994-04-01

    This UMTRA Project List of Reportable occurrences is provided to facilitate efficient categorization of reportable occurrences. These guidelines have been established in compliance with DOE minimum reporting requirements under DOE Order 5000.3B. Occurrences are arranged into nine groups relating to US Department of Energy (DOE) Uranium Mill Tailings Remedial Action (UMTRA) Project operations for active sites. These nine groupings are provided for reference to determined whether an occurrence meets reporting requirement criteria in accordance with the minimum reporting requirements. Event groups and significance categories that cannot or will not occur, and that do not apply to UMTRA Project operations, are omitted. Occurrence categorization shall be as follows: Group 1. Facility Condition; Group 2. Environmental; Group 3. Personnel Safety; Group 4. Personnel Radiation Protection; Group 5. Safeguards and Security; Group 6. Transportation; Group 7. Value Basis Reporting; Group 8. Facility Status; and Group 9. Cross-Category Items.

  7. Reduction of foraging work and cooperative breeding.

    PubMed

    Toyoizumi, Hiroshi; Field, Jeremy

    2014-06-01

    Using simple stochastic models, we discuss how cooperative breeders, especially wasps and bees, can improve their productivity by reducing foraging work. In a harsh environment, where foraging is the main cause of mortality, such breeders achieve greater productivity by reducing their foraging effort below full capacity, and they may thrive by adopting cooperative breeding. This could prevent the population extinction of cooperative breeders under conditions where a population of lone breeders cannot be maintained. PMID:24619571

  8. Parenting Behavior and the Occurrence and Co-occurrence of Adolescent Depressive Symptoms and Conduct Problems.

    ERIC Educational Resources Information Center

    Ge, Xiaojia; And Others

    1996-01-01

    Evaluated prevalence of the co-occurrence of depressive symptoms and conduct problems in a community sample of 10th-grade adolescents participating in a four-year longitudinal study. Found that early hostile parent behavior increased the probability of later occurrence and co-occurrence of elevated depressive symptoms and conduct problems, whereas…

  9. The biodiversity and genetic structure of Balearic sheep breeds.

    PubMed

    Pons, A L; Landi, V; Martinez, A; Delgado, J V

    2015-06-01

    The Balearic sheep breeds, Mallorquina, Menorquina, Roja Mallorquina, Ibicenca and one possible new genetic group, Formentera, constitute a unique genetic resource in the Mediterranean farming landscape, displaying high genetic diversity levels and being well differentiated among themselves and with respect to the continental sheep breeds. We used a microsatellite panel of markers to study genetic diversity and relationships with other Spanish breeds. The results reported in this study have important implications for the use, conservation and breeding of Balearic sheep stocks. A mean number of 7.59 alleles was found among the Balearic sheep breeds for the microsatellites scored. The whole mean value of observed heterozygosity amounted to 0.62, whereas the expected heterozygosity value was 0.69, suggesting the presence of a great degree of genetic variability, although a significant deficit of heterozygotes was detected for some markers. Genetic distance estimates showed that Balearic sheep are differentiated from the other Spanish breeds and in particular, from the Merino type. The Ibicenca breed showed the highest distance value from other breeds. The neighbour-net method of analysis clustered the Roja Mallorquina, Menorquina and Mallorquina breeds. The Structure results clearly demonstrated the genetic differentiation among the four Balearic sheep breeds, with the Ibicenca and Formentera races joined, with slight migration among them. Few external genetic influences from the Spanish mainland breeds were detected. PMID:25823943

  10. The effects of dog breed development on genetic diversity and the relative influences of performance and conformation breeding.

    PubMed

    Pedersen, N; Liu, H; Theilen, G; Sacks, B

    2013-06-01

    Genetic diversity was compared among eight dog breeds selected primarily for conformation (Standard Poodle, Italian Greyhound and show English Setter), conformation and performance (Brittany), predominantly performance (German Shorthaired and Wirehaired Pointers) or solely performance (field English Setter and Red Setter). Modern village dogs, which better reflect ancestral genetic diversity, were used as the standard. Four to seven maternal and one to two Y haplotypes were found per breed, with one usually dominant. Diversity of maternal haplotypes was greatest in village dogs, intermediate in performance breeds and lowest in conformation breeds. Maternal haplotype sharing occurred across all breeds, while Y haplotypes were more breed specific. Almost all paternal haplotypes were identified among village dogs, with the exception of the dominant Y haplotype in Brittanys, which has not been identified heretofore. The highest heterozygosity based on 24 autosomal microsatellites was found in village dogs and the lowest in conformation (show) breeds. Principal coordinate analysis indicated that conformation-type breeds were distinct from breeds heavily used for performance, the latter clustering more closely with village dogs. The Brittany, a well-established dual show and field breed, was also genetically intermediate between the conformation and performance breeds. The number of DLA-DRB1 alleles varied from 3 to 10 per breed with extensive sharing. SNPs across the wider DLA region were more frequently homozygous in all pure breeds than in village dogs. Compared with their village dog relatives, all modern breed dogs exhibit reduced genetic diversity. Genetic diversity was even more reduced among breeds under selection for show/conformation. PMID:23679949

  11. Detection of Breeding Blankets Using Antineutrinos

    NASA Astrophysics Data System (ADS)

    Cogswell, Bernadette; Huber, Patrick

    2016-03-01

    The Plutonium Management and Disposition Agreement between the United States and Russia makes arrangements for the disposal of 34 metric tons of excess weapon-grade plutonium. Under this agreement Russia plans to dispose of its excess stocks by processing the plutonium into fuel for fast breeder reactors. To meet the disposition requirements this fuel would be burned while the fast reactors are run as burners, i.e., without a natural uranium blanket that can be used to breed plutonium surrounding the core. This talk discusses the potential application of antineutrino monitoring to the verification of the presence or absence of a breeding blanket. It is found that a 36 kg antineutrino detector, exploiting coherent elastic neutrino-nucleus scattering and made of silicon, could determine the presence of a breeding blanket at a liquid sodium cooled fast reactor at the 95% confidence level within 90 days. Such a detector would be a novel non-intrusive verification tool and could present a first application of coherent elastic neutrino-nucleus scattering to a real-world challenge.

  12. Beef cattle breeding à la Jefferson.

    PubMed

    Hohenboken, W D

    1982-03-01

    ?Even more than most disciplines in the Animal Sciences, quantitative genetics is dependent upon models. Models, by definition, are abstractions of reality. Invariably they require simplifying assumptions, which should be but sometimes are not clearly specified. One thesis of this article, illustrated by examples, is that many of the assumptions upon which animal breeding theory and practice are based are not valid. Some proportion of research resources should be devoted to challenging or verifying those assumptions and following up those areas of enquiry suggested by the outcome of such research. A further thesis is that the selection of topics and priorities for animal breeding research should be a matter of choice by individual scientists and should not be determined by steering committees or directed by administrative fiat. Hopefully, the resultant mutation, cross-fertilization, assortment, recombination and selection of ideas that would result would bestow upon our discipline higher fitness from multiple-peak epistasis, and minimal danger of extinction (or petrification) from over-specialization. A final thesis is that true creativity by research scientists should be nurtured and rewarded and that work in traditional areas of breeding and quantitative genetics should be continued-but done better. PMID:7085523

  13. MHC variability in heritage breeds of chickens.

    PubMed

    Fulton, J E; Lund, A R; McCarron, A M; Pinegar, K N; Korver, D R; Classen, H L; Aggrey, S; Utterbach, C; Anthony, N B; Berres, M E

    2016-02-01

    The chicken Major Histocompatibility Complex (MHC) is very strongly associated with disease resistance and thus is a very important region of the chicken genome. Historically, MHC (B locus) has been identified by the use of serology with haplotype specific alloantisera. These antisera can be difficult to produce and frequently cross-react with multiple haplotypes and hence their application is generally limited to inbred and MHC-defined lines. As a consequence, very little information about MHC variability in heritage chicken breeds is available. DNA-based methods are now available for examining MHC variability in these previously uncharacterized populations. A high density SNP panel consisting of 101 SNP that span a 230,000 bp region of the chicken MHC was used to examine MHC variability in 17 heritage populations of chickens from five universities from Canada and the United States. The breeds included 6 heritage broiler lines, 3 Barred Plymouth Rock, 2 New Hampshire and one each of Rhode Island Red, Light Sussex, White Leghorn, Dark Brown Leghorn, and 2 synthetic lines. These heritage breeds contained from one to 11 haplotypes per line. A total of 52 unique MHC haplotypes were found with only 10 of them identical to serologically defined haplotypes. Furthermore, nine MHC recombinants with their respective parental haplotypes were identified. This survey confirms the value of these non-commercially utilized lines in maintaining genetic diversity. The identification of multiple MHC haplotypes and novel MHC recombinants indicates that diversity is being generated and maintained within these heritage populations. PMID:26827122

  14. Breeding quantum error-correcting codes

    SciTech Connect

    Dong Ying; Hu Dan; Yu Sixia

    2010-02-15

    The stabilizer code, one major family of quantum error-correcting codes (QECC), is specified by the joint eigenspace of a commuting set of Pauli observables. It turns out that noncommuting sets of Pauli observables can be used to construct more efficient QECCs, such as the entanglement-assisted QECCs, which are built directly from any linear classical codes whose detailed properties are needed to determine the parameters of the resulting quantum codes. Here we propose another family of QECCs, namely, the breeding QECCs, that also employ noncommuting sets of Pauli observables and can be built from any classical additive codes, either linear or nonlinear, with the advantage that their parameters can be read off directly from the corresponding classical codes. Besides, since nonlinear codes are generally more efficient than linear codes, our breeding codes have better parameters than those codes built from linear codes. The terminology is justified by the fact that our QECCs are related to the ordinary QECCs in exactly the same way that the breeding protocols are related to the hashing protocols in the entanglement purification.

  15. Diet and breeding performance in cats.

    PubMed

    Olovson, S G

    1986-07-01

    A conventional cat breeding colony with 70 queens (female cats) was studied during a 4 year period 1979-1982. During that time the fat content in the diet was increased from 15% to 27% of dry matter. An increase in the number of kittens per litter (from 4.5 to 5.5) and in the annual number of litters per queen (from 1.4 to 2.3) was found. In addition, the mortality decreased from over 20% to 9%. Bodyweight gain under the new diet was such that the males reached 2500 g in 4 months while the females showed this same weight at 5 months of age. Litter size and sex distribution as a function of queen age, litter interval and time of year are presented. It is concluded that husbandry and diet are factors which are of great importance in a cat breeding unit. It is shown that under our conditions it is possible to breed conventional cats with good results. PMID:3795859

  16. Reproductive senescence in a cooperatively breeding mammal.

    PubMed

    Sharp, Stuart P; Clutton-Brock, Tim H

    2010-01-01

    1. Senescence (or 'ageing') is a widespread and important process in wild animal populations, but variation in ageing patterns within and between species is poorly understood. 2. In cooperatively breeding species, the costs of reproduction are shared between breeders and one or more helpers. The effects of ageing in breeders may therefore be moderated by the presence of helpers, but there have been very few studies of senescence patterns in natural populations of cooperative breeders. 3. Here, we use 13 years of data from a long-term study population of wild meerkats (Suricata suricatta) to investigate age-related changes in several traits known to be key components of reproductive success in females of this species. 4. Four of the six traits studied exhibited significant declines with age, indicating senescence. Litter size, the number of litters produced per year and the number of pups that survived to emergence from the natal burrow per year all increased with female age up to a peak at c. 4 years, and declined steeply thereafter; the mean pup weight at emergence in a given litter declined steadily from age zero. 5. These results provide the first evidence of reproductive senescence in a wild population of a cooperatively breeding vertebrate. Breeding success declined with age despite the sharing of reproductive costs in this species, but further study is needed to investigate whether helping affects other aspects of senescence, including survival. PMID:19758306

  17. Current Occurrence of the Atlantic Sturgeon Acipenser oxyrinchus in Northern Spain: A New Prospect for Sturgeon Conservation in Western Europe

    PubMed Central

    Elvira, Benigno

    2015-01-01

    Acipenser oxyrinchus is considered extirpated in Europe, but numerous breeding populations still exist on the Atlantic coast of North America. An adult female A. oxyrinchus, 2500 mm total length and 120 kg wet weight, was accidentally fished on 24 November 2010 near the coast of Gijón, Asturias, Spain. The fish was identified by its morphological pattern as well as by mitochondrial and nuclear DNA analyses. Because the sturgeon was found far away from any known breeding area, it was considered a stray or vagrant specimen. It certainly has a natural origin, but its eventual birthplace could not be determined. Because its current occurrence was unknown in southwestern Europe until now, the species is not cataloged or protected in this area. Therefore, the residual European stocks of A. oxyrinchus ought to be listed as Critically Endangered (CR) according to the IUCN categories. Likewise, it is imperative for southwestern European countries with an historic or recent occurrence of A. oxyrinchus to protect the species through domestic and international legislation. The present sympatric occurrence of A. sturio and A. oxyrinchus raises new challenges about key questions, such as the species selection for restoration program in European countries. Accurate monitoring is mandatory to obtain appropriate information for an assessment of the current occurrence of A. oxyrinchus in southwestern Europe. PMID:26717564

  18. Observations on anopheline breeding in relation to aquatic plants in different breeding habitats of Kheda (Gujarat).

    PubMed

    Kant, Rajni; Srivastava, H C

    2004-09-01

    Water bodies infested with aquatic vegetations may pose problems in mosquito control through bio-environmental methods. Paucity of information pertaining to association of mosquito breeding with aquatic vegetation was the basis for present investigation. The mosquito breeding sites infested with solitary/dominating plant community viz., Eichhornia crassipes, Ipomoea aquatica, Hydrilla verticillata, Nymphea neuchali, Trapa bispinosa, Lemna paucicostata, Trachelomonas spp., Azolla pinnata, Algae spp. and Cynodon dactylon were selected for the study. The investigation revealed that breeding of eleven anopheline species was associated with Eichhornia in different habitats followed by Hydrilla, algae and Cynodon (8 each), Ipomoea and Trapa (6), Lemna. and Nymphea (5), Azolla and Trachelomonas (4). An. subpictus was associated with all types of vegetation. An. annularis, An. nigerrimus and An. barbirostris were associated with nine plant species. An. culicifacies, the principal malaria vector was found breeding in association with seven aquatic plants and showed strong association with Cynodon, Hydrilla and algae. The species diversity in habitats infested with Hydrilla, algae and Cynodon seems to be most favourable for the breeding of An. culicifacies. It is suggested that thinning or removal of such vegetations at regular interval may help to reduce vector population and enhance the efficacy of biological control agents particularly the larvivorous fishes in such habitats. PMID:16509256

  19. Natural breeding places of phlebotomine sandflies.

    PubMed

    Feliciangeli, M D

    2004-03-01

    Methods of finding larvae and pupae of phlebotomine sandflies (Diptera: Psychodidae) are described and the known types of breeding sites used by sandflies are listed. Three ways of detecting sandfly breeding places are the use of emergence traps placed over potential sources to catch newly emerged adult sandflies; flotation of larvae and pupae from soil, etc., and desiccation of media to drive out the larvae. Even so, remarkably little information is available on the ecology of the developmental stages of sandflies, despite their importance as vectors of Leishmania, Bartonella and phleboviruses affecting humans and other vertebrates in warmers parts of the world. Regarding the proven or suspected vectors of leishmaniases, information on breeding sites is available for only 15 out of 29 species of sandflies involved in the Old World and 12 out of 44 species of sandflies involved in the Americas, representing approximately 3% of the known species of Phlebotominae. Ecotopes occupied by immature phlebotomines are usually organically rich moist soils, such as the rain forest floor (Lutzomyia intermedia, Lu. umbratilis, Lu. whitmani in the Amazon; Lu. gomezi, Lu. panamensis, Lu. trapidoi in Panama), or contaminated soil of animal shelters (Lu. longipalpis s.l. in South America, Phlebotomus argentipes in India; P. chinensis in China; P. ariasi, P. perfiliewi, P. perniciosus in Europe). Developmental stages of some species (P. langeroni and P. martini in Africa; P. papatasi in Eurasia; Lu. longipalpis s.l. in South America), have been found in a wide range of ecotopes, and many species of sandflies employ rodent burrows as breeding sites, although the importance of this niche is unclear. Larvae of some phlebotomines have been found in what appear to be specialized niches such as Lu. ovallesi on buttress roots of trees in Panama; P. celiae in termite hills in Kenya; P. longipes and P. pedifer in caves and among rocks in East Africa. Old World species found as immatures in

  20. Spatial patterns of breeding success of grizzly bears derived from hierarchical multistate models.

    PubMed

    Fisher, Jason T; Wheatley, Matthew; Mackenzie, Darryl

    2014-10-01

    Conservation programs often manage populations indirectly through the landscapes in which they live. Empirically, linking reproductive success with landscape structure and anthropogenic change is a first step in understanding and managing the spatial mechanisms that affect reproduction, but this link is not sufficiently informed by data. Hierarchical multistate occupancy models can forge these links by estimating spatial patterns of reproductive success across landscapes. To illustrate, we surveyed the occurrence of grizzly bears (Ursus arctos) in the Canadian Rocky Mountains Alberta, Canada. We deployed camera traps for 6 weeks at 54 surveys sites in different types of land cover. We used hierarchical multistate occupancy models to estimate probability of detection, grizzly bear occupancy, and probability of reproductive success at each site. Grizzly bear occupancy varied among cover types and was greater in herbaceous alpine ecotones than in low-elevation wetlands or mid-elevation conifer forests. The conditional probability of reproductive success given grizzly bear occupancy was 30% (SE = 0.14). Grizzly bears with cubs had a higher probability of detection than grizzly bears without cubs, but sites were correctly classified as being occupied by breeding females 49% of the time based on raw data and thus would have been underestimated by half. Repeated surveys and multistate modeling reduced the probability of misclassifying sites occupied by breeders as unoccupied to <2%. The probability of breeding grizzly bear occupancy varied across the landscape. Those patches with highest probabilities of breeding occupancy-herbaceous alpine ecotones-were small and highly dispersed and are projected to shrink as treelines advance due to climate warming. Understanding spatial correlates in breeding distribution is a key requirement for species conservation in the face of climate change and can help identify priorities for landscape management and protection. PMID:24762089

  1. Genomic deletion of CNGB3 is identical by descent in multiple canine breeds and causes achromatopsia

    PubMed Central

    2013-01-01

    Background Achromatopsia is an autosomal recessive disease characterized by the loss of cone photoreceptor function that results in day-blindness, total colorblindness, and decreased central visual acuity. The most common causes for the disease are mutations in the CNGB3 gene, coding for the beta subunit of the cyclic nucleotide-gated channels in cones. CNGB3-achromatopsia, or cone degeneration (cd), is also known to occur in two canine breeds, the Alaskan malamute (AM) and the German shorthaired pointer. Results Here we report an in-depth characterization of the achromatopsia phenotype in a new canine breed, the miniature Australian shepherd (MAS). Genotyping revealed that the dog was homozygous for a complete genomic deletion of the CNGB3 gene, as has been previously observed in the AM. Identical breakpoints on chromosome 29 were identified in both the affected AM and MAS with a resulting deletion of 404,820 bp. Pooled DNA samples of unrelated purebred Australian shepherd, MAS, Siberian husky, Samoyed and Alaskan sled dogs were screened for the presence of the affected allele; one Siberian husky and three Alaskan sled dogs were identified as carriers. The affected chromosomes from the AM, MAS, and Siberian husky were genotyped for 147 SNPs in a 3.93 Mb interval within the cd locus. An identical shared affected haplotype, 0.5 Mb long, was observed in all three breeds and defined the minimal linkage disequilibrium (LD) across breeds. This supports the idea that the mutated allele was identical by descent (IBD). Conclusion We report the occurrence of CNGB3-achromatopsia in a new canine breed, the MAS. The CNGB3-deletion allele previously described in the AM was also observed in a homozygous state in the affected MAS, as well as in a heterozygous carrier state in a Siberian husky and Alaskan sled dogs. All affected alleles were shown to be IBD, strongly suggesting an affected founder effect. Since the MAS is not known to be genetically related to the AM, other

  2. Effect of breed and body weight on echocardiographic values in four breeds of dogs of differing somatotype.

    PubMed

    Morrison, S A; Moise, N S; Scarlett, J; Mohammed, H; Yeager, A E

    1992-01-01

    Eighty normal dogs of four morphologically disparate breeds (Pembroke Welsh Corgi, Miniature Poodle, Afghan Hound, Golden Retriever) (twenty of each breed), were studied by echocardiography to determine the importance of breed and weight in establishing normal echocardiographic reference ranges. Echocardiographic measurements included left-ventricular chamber dimension at systole and end-diastole, right-ventricular chamber dimension at end-diastole, interventricular septal thickness at systole and end-diastole, left-ventricular free wall thickness at systole and end-diastole, E-point septal separation, aortic root dimension at end-diastole, left atrial dimension, and fractional shortening. Analyses of covariance indicated that for all measurements except right-ventricular chamber dimension, the means were significantly different among breeds, after the differences in weight were taken into account. Echocardiographic measurements are variable even within the same breed. Breed must be considered in establishing echocardiographic measurement reference ranges. Echocardiographic values for each breed are presented. PMID:1522552

  3. Modelling occurrence and abundance of species when detection is imperfect

    USGS Publications Warehouse

    Royle, J. Andrew; Nichols, J.D.; Kery, M.

    2005-01-01

    Relationships between species abundance and occupancy are of considerable interest in metapopulation biology and in macroecology. Such relationships may be described concisely using probability models that characterize variation in abundance of a species. However, estimation of the parameters of these models in most ecological problems is impaired by imperfect detection. When organisms are detected imperfectly, observed counts are biased estimates of true abundance, and this induces bias in stated occupancy or occurrence probability. In this paper we consider a class of models that enable estimation of abundance/occupancy relationships from counts of organisms that result from surveys in which detection is imperfect. Under such models, parameter estimation and inference are based on conventional likelihood methods. We provide an application of these models to geographically extensive breeding bird survey data in which alternative models of abundance are considered that include factors that influence variation in abundance and detectability. Using these models, we produce estimates of abundance and occupancy maps that honor important sources of spatial variation in avian abundance and provide clearly interpretable characterizations of abundance and occupancy adjusted for imperfect detection.

  4. Winter habitat occurrence patterns of temperate migrant birds in Belize

    USGS Publications Warehouse

    Dawson, D.K.; Robbins, C.S.; Sauer, J.R.

    1992-01-01

    We used mist nets and point counts to sample bird populations in 61 sites in Belize during January-March of 1987-1991. Sites were classified as forest, second growth, woody agricultural crops (citrus, mango, cacao, and cashew), or non-woody agricultural crops (rice and sugar cane). We evaluated patterns of occurence of wintering temperate migrant bird species in these habitats. Mist net captures of 22 of 31 migrant species differed significantly among habitats. Of these, 13 species were captured more frequently in the agricultural habitats. American Redstart (Setophaga ruticilla), Black-and-white Warbler (Mniotilta varia), and Magnolia Warbler (Dendroica magnolia) were among the species captured most frequently in woody agricultural habitats; captures of Common Yellowthroat (Geothlypis trichas), Indigo Bunting (Passerina cyanea), and Northern (lcterus galbula) and Orchard orioles (I. spur/anus) were highest in the non-woody agricultural sites. We relate these occurrence patterns to trends in breeding populations in North America. While count data provide a wide picture of winter habitat distribution of migrants, more intensive work is necessary to assess temporal and geographic variation of migrant bird use of agricultural habitats.

  5. Hydrothermal Occurrences in Gusev Crater

    NASA Astrophysics Data System (ADS)

    Ruff, S. W.; Farmer, J. D.; Milliken, R.; Mills, V. W.; Shock, E.

    2011-12-01

    Exploration of the Gusev crater landing site by the Spirit rover has revealed for the first time, in situ evidence of hydrothermal activity on Mars. Most compelling are eroded outcrops of opaline silica found adjacent to "Home Plate" [1], an eroded stack of volcaniclastic deposits stratigraphically overlain by a vesicular basalt unit [2]. Recent work [3] demonstrates that the silica outcrops occur in a stratiform unit that possibly surrounds Home Plate. The outcrops are dominated by opal-A with no evidence for diagenesis to other silica phases. No other hydrous or alteration phases have been identified within the outcrops; most notable is a lack of sulfur phases. The outcrops have porous and in some cases, brecciated microtextures. Taken together, these observations support the interpretation that the opaline silica outcrops were produced in a hot spring or perhaps geyser environment. In this context, they are silica sinter deposits precipitated from silica-rich hydrothermal fluids, possibly related to the volcanism that produced the Home Plate volcanic rocks. On Earth, debris aprons in which sinter is brecciated, reworked, and cemented, are common features of hot springs and geysers and are good analogs for the Martian deposits. An alternative hypothesis is that the silica resulted from acid-sulfate leaching of precursor rocks by fumarolic steam condensates. But stratigraphic, textural, and chemical observations tend to diminish this possibility [3]. We are conducting extensive laboratory and field investigations of silica from both hot spring/geyser and fumarole environments to understand the full range of mineralogical, chemical, textural, and morphological variations that accompany its production, in order to shed more light on the Home Plate occurrence. The recent discovery of abundant Mg-Fe carbonate (16-34 wt%) in outcrops named Comanche provides possible evidence for additional hydrothermal activity in Gusev [4]. However, the carbonate is hosted by olivine

  6. Molecular Genetics of Sex Identification, Breed Ancestry and Polydactyly in the Norwegian Lundehund Breed.

    PubMed

    Kropatsch, Regina; Melis, Claudia; Stronen, Astrid V; Jensen, Henrik; Epplen, Joerg T

    2015-01-01

    The Norwegian Lundehund breed of dog has undergone a severe loss of genetic diversity as a result of inbreeding and epizootics of canine distemper. As a consequence, the breed is extremely homogeneous and accurate sex identification is not always possible by standard screening of X-chromosomal loci. To improve our genetic understanding of the breed we genotyped 17 individuals using a genome-wide array of 170 000 single nucleotide polymorphisms (SNPs). Standard analyses based on expected homozygosity of X-chromosomal loci failed in assigning individuals to the correct sex, as determined initially by physical examination and confirmed with the Y-chromosomal marker, amelogenin. This demonstrates that identification of sex using standard SNP assays can be erroneous in highly inbred individuals. PMID:25994807

  7. Integrating occupancy models and structural equation models to understand species occurrence

    PubMed Central

    Joseph, Maxwell B.; Preston, Daniel L.; Johnson, Pieter T. J.

    2016-01-01

    Understanding the drivers of species occurrence is a fundamental goal in basic and applied ecology. Occupancy models have emerged as a popular approach for inferring species occurrence because they account for problems associated with imperfect detection in field surveys. Current models, however, are limited because they assume covariates are independent (i.e., indirect effects do not occur). Here, we combined structural equation and occupancy models to investigate complex influences on species occurrence while accounting for imperfect detection. These two methods are inherently compatible because they both provide means to make inference on latent or unobserved quantities based on observed data. Our models evaluated the direct and indirect roles of cattle grazing, water chemistry, vegetation, nonnative fishes, and pond permanence on the occurrence of six pond-breeding amphibians, two of which are threatened: the California tiger salamander (Ambystoma californiense), and the California red-legged frog (Rana draytonii). While cattle had strong effects on pond vegetation and water chemistry, their overall effects on amphibian occurrence were small compared to the consistently negative effects of nonnative fish. Fish strongly reduced occurrence probabilities for four of five native amphibians, including both species of conservation concern. These results could help to identify drivers of amphibian declines and to prioritize strategies for amphibian conservation. More generally, this approach facilitates a more mechanistic representation of ideas about the causes of species distributions in space and time. As shown here, occupancy modeling and structural equation modeling are readily combined, and bring rich sets of techniques that may provide unique theoretical and applied insights into basic ecological questions. PMID:27197402

  8. Admixture and Local Breed Marginalization Threaten Algerian Sheep Diversity

    PubMed Central

    Ciani, Elena; Kdidi, Samia; Aouissat, Miloud; Dhimi, Laziz; Lafri, Mohamed; Maftah, Abderrahman; Mehtar, Nadhira

    2015-01-01

    Due to its geo-climatic conditions, Algeria represents a biodiversity hotspot, with sheep breeds well adapted to a patchwork of extremely heterogeneous harsh habitats. The importance of this peculiar genetic reservoir increases as climate change drives the demand for new adaptations. However, the expansion of a single breed (Ouled-Djellal) which occurred in the last decades has generated a critical situation for the other breeds; some of them are being subjected to uncontrolled cross-breeding with the favored breed and/or to marginalization (effective size contraction). This study investigated genetic diversity within and among six of the nine Algerian breeds, by use of 30 microsatellite markers. Our results showed that, in spite of the census contraction experienced by most of the considered breeds, genetic diversity is still substantial (average gene diversity ranging 0.68 to 0.76) and inbreeding was not identified as a problem. However, two breeds (Rembi and Taâdmit) appeared to have lost most of their genetic originality because of intensive cross-breeding with Ouled-Djellal. Based on the above evidence, we suggest Hamra, Sidaoun, and D’man as breeds deserving the highest priority for conservation in Algeria. PMID:25875832

  9. Admixture and local breed marginalization threaten Algerian sheep diversity.

    PubMed

    Gaouar, Samir Bachir Souheil; Da Silva, Anne; Ciani, Elena; Kdidi, Samia; Aouissat, Miloud; Dhimi, Laziz; Lafri, Mohamed; Maftah, Abderrahman; Mehtar, Nadhira

    2015-01-01

    Due to its geo-climatic conditions, Algeria represents a biodiversity hotspot, with sheep breeds well adapted to a patchwork of extremely heterogeneous harsh habitats. The importance of this peculiar genetic reservoir increases as climate change drives the demand for new adaptations. However, the expansion of a single breed (Ouled-Djellal) which occurred in the last decades has generated a critical situation for the other breeds; some of them are being subjected to uncontrolled cross-breeding with the favored breed and/or to marginalization (effective size contraction). This study investigated genetic diversity within and among six of the nine Algerian breeds, by use of 30 microsatellite markers. Our results showed that, in spite of the census contraction experienced by most of the considered breeds, genetic diversity is still substantial (average gene diversity ranging 0.68 to 0.76) and inbreeding was not identified as a problem. However, two breeds (Rembi and Taâdmit) appeared to have lost most of their genetic originality because of intensive cross-breeding with Ouled-Djellal. Based on the above evidence, we suggest Hamra, Sidaoun, and D'man as breeds deserving the highest priority for conservation in Algeria. PMID:25875832

  10. Challenges and opportunities in genetic improvement of local livestock breeds

    PubMed Central

    Biscarini, Filippo; Nicolazzi, Ezequiel L.; Stella, Alessandra; Boettcher, Paul J.; Gandini, Gustavo

    2015-01-01

    Sufficient genetic variation in livestock populations is necessary both for adaptation to future changes in climate and consumer demand, and for continual genetic improvement of economically important traits. Unfortunately, the current trend is for reduced genetic variation, both within and across breeds. The latter occurs primarily through the loss of small, local breeds. Inferior production is a key driver for loss of small breeds, as they are replaced by high-output international transboundary breeds. Selection to improve productivity of small local breeds is therefore critical for their long term survival. The objective of this paper is to review the technology options available for the genetic improvement of small local breeds and discuss their feasibility. Most technologies have been developed for the high-input breeds and consequently are more favorably applied in that context. Nevertheless, their application in local breeds is not precluded and can yield significant benefits, especially when multiple technologies are applied in close collaboration with farmers and breeders. Breeding strategies that require cooperation and centralized decision-making, such as optimal contribution selection, may in fact be more easily implemented in small breeds. PMID:25763010

  11. Relationships among and variation within rare breeds of swine.

    PubMed

    Roberts, K S; Lamberson, W R

    2015-08-01

    Extinction of rare breeds of livestock threatens to reduce the total genetic variation available for selection in the face of the changing environment and new diseases. Swine breeds facing extinction typically share characteristics such as small size, slow growth rate, and high fat percentage, which limit them from contributing to commercial production. Compounding the risk of loss of variation is the lack of pedigree information for many rare breeds due to inadequate herd books, which increases the chance that producers are breeding closely related individuals. By making genetic data available, producers can make more educated breeding decisions to preserve genetic diversity in future generations, and conservation organizations can prioritize investments in breed preservation. The objective of this study was to characterize genetic variation within and among breeds of swine and prioritize heritage breeds for preservation. Genotypes from the Illumina PorcineSNP60 BeadChip (GeneSeek, Lincoln, NE) were obtained for Guinea, Ossabaw Island, Red Wattle, American Saddleback, Mulefoot, British Saddleback, Duroc, Landrace, Large White, Pietrain, and Tamworth pigs. A whole-genome analysis toolset was used to construct a genomic relationship matrix and to calculate inbreeding coefficients for the animals within each breed. Relatedness and average inbreeding coefficient differed among breeds, and pigs from rare breeds were generally more closely related and more inbred ( < 0.05). A multidimensional scaling diagram was constructed based on the SNP genotypes. Animals within breeds clustered tightly together except for 2 Guinea pigs. Tamworth, Duroc, and Mulefoot tended to not cluster with the other 7 breeds. PMID:26440160

  12. Breeding without Mendelism: theory and practice of dairy cattle breeding in the Netherlands 1900-1950.

    PubMed

    Theunissen, Bert

    2008-01-01

    In the 1940s and 1950s, Dutch scientists became increasingly critical of the practices of commercial dairy cattle breeders. Milk yields had hardly increased for decades, and the scientists believed this to be due to the fact that breeders still judged the hereditary potential of their animals on the basis of outward characteristics. An objective verdict on the qualities of breeding stock could only be obtained by progeny testing, the scientists contended: the best animals were those that produced the most productive offspring. Some scientists had been making this claim since the beginning of the twentieth century. Why was it that their advice was apparently not heeded by breeders for so long? And what were the methods and beliefs that guided their practices? In this paper I intend to answer these questions by analysing the practical realities of dairy farming and stock breeding in The Netherlands between 1900 and 1950. Breeders continued to employ traditional breeding methods that had proven their effectiveness since the late eighteenth century. Their methods consisted in inbreeding--breeding in 'bloodlines,' as they called it--and selection on the basis of pedigree, conformation and milk recording data. Their aims were 'purity' and 'uniformity' of type. Progeny testing was not practiced due to practical difficulties. Before World War II, scientists acknowledged that genetic theory was of little practical use to breeders of livestock. Still, hereditary theory was considered to be helpful to assess the value of the breeders' methods. For instance, striving for purity was deemed to be consistent with Mendelian theory. Yet the term purity had different connotations for scientists and practical workers. For the former, it referred to homozygosity; for the latter, it rather buttressed the constancy of a distinct commercial 'brand.' Until the 1940s, practical breeders and most scientists were agreed that selecting animals purely for production was ill-advised. Cows of

  13. Multiple breeding females in captive groups of golden-headed lion tamarins (Leontopithecus chrysomelas): causes and consequences.

    PubMed

    De Vleeschouwer, K; Van Elsacker, L; Leus, K

    2001-01-01

    In Callitrichidae, reproduction in subordinate females is generally inhibited but occurs in rare cases, possibly in association with the presence of an unrelated male, important food resources or low dispersal opportunities. This study investigates the occurrence of groups with multiple breeding females in captive golden-headed lion tamarins (Leontopithecus chrysomelas), the factors leading to their formation and the consequences for the group. Information obtained from studbook data on the world captive population during 1984-1998 revealed that polygynous groups in captivity are very rare: only 7 cases were discovered. Family groups in which daughters started breeding with a related male were larger than average, had a high number of sexually mature sons and eldest offspring that were well past the age of sexual maturity. Following a breeding attempt, severe aggression frequently occurred, especially if the infants were liveborn. Polygynous groups composed of two related females and an unrelated male tended to remain stable for a longer period than families with breeding daughters. Competition for infant care is probably an important factor determining whether the polygynous situation can persist and for how long. PMID:11275743

  14. Amphibian occurrence and aquatic invaders in a changing landscape: Implications for wetland mitigation in the Willamette Valley, Oregon

    USGS Publications Warehouse

    Pearl, Christopher A.; Adams, Michael J.; Leuthold, N.; Bury, R. Bruce

    2005-01-01

    Despite concern about the conservation status of amphibians in western North America, few field studies have documented occurrence patterns of amphibians relative to potential stressors. We surveyed wetland fauna in Oregon's Willamette Valley and used an information theoretic approach (AIC) to rank the associations between native amphibian breeding occurrence and wetland characteristics, non-native aquatic predators, and landscape characteristics in a mixed urban-agricultural landscape. Best predictors varied among the five native amphibians and were generally consistent with life history differences. Pacific tree frog (Pseudacris regilla) and long-toed salamander (Ambystoma macrodactylum) occurrence was best predicted by the absence of non-native fish. Northern red-legged frog (Rana a. aurora) and northwestern salamander (Ambystoma gracile) were most strongly related to wetland vegetative characteristics. The occurrence of rough-skinned newts (Taricha granulosa), a migratory species that makes extensive use of terrestrial habitats, was best predicted by greater forest cover within 1 km. The absence of non-native fish was a strong predictor of occurrence for four of the five native species. In contrast, amphibians were not strongly related to native fish presence. We found little evidence supporting negative effects of the presence of breeding populations of bullfrog (Rana catesbeiana) on any native species. Only the two Ambystoma salamanders were associated with wetland permanence. Northwestern salamanders (which usually have a multi-year larval stage) were associated with permanent waters, while long-toed salamanders were associated with temporary wetlands. Although all the species make some use of upland habitats, only one (rough-skinned newt) was strongly associated with surrounding landscape conditions. Instead, our analysis suggests that within-wetland characteristics best predict amphibian occurrence in this region. We recommend that wetland preservation and

  15. Brief Communication: Freaque wave occurrences in 2013

    NASA Astrophysics Data System (ADS)

    Liu, P. C.

    2014-11-01

    Documenting freaque waves when they occured around the globe in 2013 is based here on news reports on the internet. It was found that there were a total 22 cases of freaque waves in 2013, based on those reported in clearly-defined physically specific environments. There were three cases in the deep ocean, six in nearshore areas, seven on sandy beaches, and seven on rocky shore areas. Note that most of the academic research has been on freaque waves in the deep ocean, which accounts for 13% of all occurrences. The majority of reported occurrences, 87%, are in the nearshore areas or along the beach area. Geographically, these cases are also fairly evenly spread around the globe. As of now, there is no general knowledge regarding the frequency of occurrence of these freaque waves, so that one may assume that 2013 was a customary year for freaque wave occurrences.

  16. Managing occurrence branching in qualitative simulation

    SciTech Connect

    Tokuda, L.

    1996-12-31

    Qualitative simulators can produce common sense abstractions of complex behaviors given only partial knowledge about a system. One of the problems which limits the applicability of qualitative simulators is the intractable branching of successor states encountered with model of even modest size. Some branches may be unavoidable due to the complex nature of a system. Other branches may be accidental results of the model chosen. A common source of intractability is occurrence branching. Occurrence branching occurs when the state transitions of two variables are unordered with respect to each other. This paper extends the QSIM model to distinguish between interesting occurrence branching and uninteresting occurrence branching. A representation, algorithm, and simulator for efficiently handling uninteresting branching is presented.

  17. Genome Mapping and Molecular Breeding of Tomato

    PubMed Central

    Foolad, Majid R.

    2007-01-01

    The cultivated tomato, Lycopersicon esculentum, is the second most consumed vegetable worldwide and a well-studied crop species in terms of genetics, genomics, and breeding. It is one of the earliest crop plants for which a genetic linkage map was constructed, and currently there are several molecular maps based on crosses between the cultivated and various wild species of tomato. The high-density molecular map, developed based on an L. esculentum × L. pennellii cross, includes more than 2200 markers with an average marker distance of less than 1 cM and an average of 750 kbp per cM. Different types of molecular markers such as RFLPs, AFLPs, SSRs, CAPS, RGAs, ESTs, and COSs have been developed and mapped onto the 12 tomato chromosomes. Markers have been used extensively for identification and mapping of genes and QTLs for many biologically and agriculturally important traits and occasionally for germplasm screening, fingerprinting, and marker-assisted breeding. The utility of MAS in tomato breeding has been restricted largely due to limited marker polymorphism within the cultivated species and economical reasons. Also, when used, MAS has been employed mainly for improving simply-inherited traits and not much for improving complex traits. The latter has been due to unavailability of reliable PCR-based markers and problems with linkage drag. Efforts are being made to develop high-throughput markers with greater resolution, including SNPs. The expanding tomato EST database, which currently includes ∼214 000 sequences, the new microarray DNA chips, and the ongoing sequencing project are expected to aid development of more practical markers. Several BAC libraries have been developed that facilitate map-based cloning of genes and QTLs. Sequencing of the euchromatic portions of the tomato genome is paving the way for comparative and functional analysis of important genes and QTLs. PMID:18364989

  18. Computerized medication administration records decrease medication occurrences.

    PubMed

    Wilson, A L; Hill, J J; Wilson, R G; Nipper, K; Kwon, I W

    1997-04-01

    Studies have demonstrated that medication errors occur at a number of locations in the continuum between ordering of drug therapy and administration of the medication. Computer management of patient medication profiles offers the opportunity to enhance communication between pharmacists and nurses, and to decrease medication errors and delays in delivery of therapy. A number of authors have postulated that computerization of medication profiles would enhance medication delivery accuracy and timeliness, but no study has demonstrated this improvement. We report the results of a retrospective analysis undertaken to assess the improvements resulting from sharing a computerized medication record. We used a broader definition of medication occurrences that includes the more traditional definition, and averted errors, delays in delivery of medications and information, and disagreements between pharmacy and nursing medication profiles. We compared medication occurrences reported through an existing internal system between two periods; the first when separate pharmacy and nursing medication records were used, and the second period when a shared medication record was used by pharmacy and nursing. Average medication occurrences per admission decreased from 0.1084 to 0.0658 (p < 0.01). Medication occurrences per dose decreased from 0.0005 to 0.0003 (p < 0.01). The use of a shared medication record by pharmacy and nursing led to a statistically significant decrease in medication occurrences. Information shared between the two professions allowed timely resolution of discrepancies in medication orders, leading to better execution of drug therapy, decreased medication occurrences, and increased efficiency. PMID:10166241

  19. GPS tracking data of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast

    PubMed Central

    Stienen, Eric W.M.; Desmet, Peter; Aelterman, Bart; Courtens, Wouter; Feys, Simon; Vanermen, Nicolas; Verstraete, Hilbran; de Walle, Marc Van; Deneudt, Klaas; Hernandez, Francisco; Houthoofdt, Robin; Vanhoorne, Bart; Bouten, Willem; Buijs, Roland-Jan; Kavelaars, Marwa M.; Müller, Wendt; Herman, David; Matheve, Hans; Sotillo, Alejandro; Lens, Luc

    2016-01-01

    Abstract In this data paper, Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast is described, a species occurrence dataset published by the Research Institute for Nature and Forest (INBO). The dataset (version 5.5) contains close to 2.5 million occurrences, recorded by 101 GPS trackers mounted on 75 Lesser Black-backed Gulls and 26 Herring Gulls breeding at the Belgian and Dutch coast. The trackers were developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, http://www.uva-bits.nl). These automatically record and transmit bird movements, which allows us and others to study their habitat use and migration behaviour in great detail. Our bird tracking network is operational since 2013. It is funded for LifeWatch by the Hercules Foundation and maintained in collaboration with UvA-BiTS and the Flanders Marine Institute (VLIZ). The recorded data are periodically released in bulk as open data (http://dataset.inbo.be/bird-tracking-gull-occurrences), and are also accessible through CartoDB and the Global Biodiversity Information Facility (GBIF). PMID:26877689

  20. GPS tracking data of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast.

    PubMed

    Stienen, Eric W M; Desmet, Peter; Aelterman, Bart; Courtens, Wouter; Feys, Simon; Vanermen, Nicolas; Verstraete, Hilbran; de Walle, Marc Van; Deneudt, Klaas; Hernandez, Francisco; Houthoofdt, Robin; Vanhoorne, Bart; Bouten, Willem; Buijs, Roland-Jan; Kavelaars, Marwa M; Müller, Wendt; Herman, David; Matheve, Hans; Sotillo, Alejandro; Lens, Luc

    2016-01-01

    In this data paper, Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast is described, a species occurrence dataset published by the Research Institute for Nature and Forest (INBO). The dataset (version 5.5) contains close to 2.5 million occurrences, recorded by 101 GPS trackers mounted on 75 Lesser Black-backed Gulls and 26 Herring Gulls breeding at the Belgian and Dutch coast. The trackers were developed by the University of Amsterdam Bird Tracking System (UvA-BiTS, http://www.uva-bits.nl). These automatically record and transmit bird movements, which allows us and others to study their habitat use and migration behaviour in great detail. Our bird tracking network is operational since 2013. It is funded for LifeWatch by the Hercules Foundation and maintained in collaboration with UvA-BiTS and the Flanders Marine Institute (VLIZ). The recorded data are periodically released in bulk as open data (http://dataset.inbo.be/bird-tracking-gull-occurrences), and are also accessible through CartoDB and the Global Biodiversity Information Facility (GBIF). PMID:26877689

  1. Genome-wide genetic changes during modern breeding of maize.

    PubMed

    Jiao, Yinping; Zhao, Hainan; Ren, Longhui; Song, Weibin; Zeng, Biao; Guo, Jinjie; Wang, Baobao; Liu, Zhipeng; Chen, Jing; Li, Wei; Zhang, Mei; Xie, Shaojun; Lai, Jinsheng

    2012-07-01

    The success of modern maize breeding has been demonstrated by remarkable increases in productivity over the last four decades. However, the underlying genetic changes correlated with these gains remain largely unknown. We report here the sequencing of 278 temperate maize inbred lines from different stages of breeding history, including deep resequencing of 4 lines with known pedigree information. The results show that modern breeding has introduced highly dynamic genetic changes into the maize genome. Artificial selection has affected thousands of targets, including genes and non-genic regions, leading to a reduction in nucleotide diversity and an increase in the proportion of rare alleles. Genetic changes during breeding happen rapidly, with extensive variation (SNPs, indels and copy-number variants (CNVs)) occurring, even within identity-by-descent regions. Our genome-wide assessment of genetic changes during modern maize breeding provides new strategies as well as practical targets for future crop breeding and biotechnology. PMID:22660547

  2. Breeding phenology and winter activity predict subsequent breeding success in a trans-global migratory seabird

    PubMed Central

    Shoji, A.; Aris-Brosou, S.; Culina, A.; Fayet, A.; Kirk, H.; Padget, O.; Juarez-Martinez, I.; Boyle, D.; Nakata, T.; Perrins, C. M.; Guilford, T.

    2015-01-01

    Inter-seasonal events are believed to connect and affect reproductive performance (RP) in animals. However, much remains unknown about such carry-over effects (COEs), in particular how behaviour patterns during highly mobile life-history stages, such as migration, affect RP. To address this question, we measured at-sea behaviour in a long-lived migratory seabird, the Manx shearwater (Puffinus puffinus) and obtained data for individual migration cycles over 5 years, by tracking with geolocator/immersion loggers, along with 6 years of RP data. We found that individual breeding and non-breeding phenology correlated with subsequent RP, with birds hyperactive during winter more likely to fail to reproduce. Furthermore, parental investment during one year influenced breeding success during the next, a COE reflecting the trade-off between current and future RP. Our results suggest that different life-history stages interact to influence RP in the next breeding season, so that behaviour patterns during winter may be important determinants of variation in subsequent fitness among individuals. PMID:26510674

  3. Breeding practices, growth, and carcass potential of fat-tailed Washera sheep breed in Ethiopia.

    PubMed

    Getachew, Tesfaye; Gizaw, Solomon; Lemma, Sisay; Taye, Mengistie

    2011-10-01

    On-farm survey of farmers' breeding practices, breeding objectives, and selection criteria and on-station feedlot performance evaluation of Washera sheep were undertaken in Ethiopia. The survey revealed that most (79.8%) of the farmers had no breeding ram. The mating system was predominantly uncontrolled. A majority (75.5%) of the sheep owners reported that they herded their sheep flock by mixing with other livestock species mainly with cattle. During grazing, 44.6% of the farmers mix their sheep flock with neighboring sheep flocks. The major sheep production objective was to generate income from the sale of live sheep. Fast growth, appearance, coat color, and pedigree performance were important ram selection criteria, respectively. Ability to breed at early age, pedigree information, mothering ability, and lambing interval were important selection criteria for ewe, respectively. The on-station performance study involved evaluation of feedlot gains and carcass production under five levels of feeding regimes (300, 400, 500, 600, and 700 g day(-1) of concentrate feed) for a period of 93 days. The results indicated that the feedlot growth and carcass performance of Washera sheep were very high, with average daily weight gains of up to 126 g and carcass weight of 16 kg, with the optimal level of supplementation for Washera sheep being at 500 g of concentrate per day for a period of 93 days. PMID:21523493

  4. Extent of linkage disequilibrium in large breed dogs: chromosomal and breed variation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Purpose: Understanding extent of linkage disequilibrium (LD) is a crucial component for successful utilization of genome-wide association studies (GWAS). The extent of LD in the dog has been described based upon small marker sets in multiple breeds and studies. Understanding variation in LD on a per...

  5. Combining Breeding Bird Survey and distance sampling to estimate density of migrant and breeding birds

    USGS Publications Warehouse

    Somershoe, S.G.; Twedt, D.J.; Reid, B.

    2006-01-01

    We combined Breeding Bird Survey point count protocol and distance sampling to survey spring migrant and breeding birds in Vicksburg National Military Park on 33 days between March and June of 2003 and 2004. For 26 of 106 detected species, we used program DISTANCE to estimate detection probabilities and densities from 660 3-min point counts in which detections were recorded within four distance annuli. For most species, estimates of detection probability, and thereby density estimates, were improved through incorporation of the proportion of forest cover at point count locations as a covariate. Our results suggest Breeding Bird Surveys would benefit from the use of distance sampling and a quantitative characterization of habitat at point count locations. During spring migration, we estimated that the most common migrant species accounted for a population of 5000-9000 birds in Vicksburg National Military Park (636 ha). Species with average populations of 300 individuals during migration were: Blue-gray Gnatcatcher (Polioptila caerulea), Cedar Waxwing (Bombycilla cedrorum), White-eyed Vireo (Vireo griseus), Indigo Bunting (Passerina cyanea), and Ruby-crowned Kinglet (Regulus calendula). Of 56 species that bred in Vicksburg National Military Park, we estimated that the most common 18 species accounted for 8150 individuals. The six most abundant breeding species, Blue-gray Gnatcatcher, White-eyed Vireo, Summer Tanager (Piranga rubra), Northern Cardinal (Cardinalis cardinalis), Carolina Wren (Thryothorus ludovicianus), and Brown-headed Cowbird (Molothrus ater), accounted for 5800 individuals.

  6. Breeding phenology and winter activity predict subsequent breeding success in a trans-global migratory seabird.

    PubMed

    Shoji, A; Aris-Brosou, S; Culina, A; Fayet, A; Kirk, H; Padget, O; Juarez-Martinez, I; Boyle, D; Nakata, T; Perrins, C M; Guilford, T

    2015-10-01

    Inter-seasonal events are believed to connect and affect reproductive performance (RP) in animals. However, much remains unknown about such carry-over effects (COEs), in particular how behaviour patterns during highly mobile life-history stages, such as migration, affect RP. To address this question, we measured at-sea behaviour in a long-lived migratory seabird, the Manx shearwater (Puffinus puffinus) and obtained data for individual migration cycles over 5 years, by tracking with geolocator/immersion loggers, along with 6 years of RP data. We found that individual breeding and non-breeding phenology correlated with subsequent RP, with birds hyperactive during winter more likely to fail to reproduce. Furthermore, parental investment during one year influenced breeding success during the next, a COE reflecting the trade-off between current and future RP. Our results suggest that different life-history stages interact to influence RP in the next breeding season, so that behaviour patterns during winter may be important determinants of variation in subsequent fitness among individuals. PMID:26510674

  7. Recognition of the Script in Serbian Documents Using Frequency Occurrence and Co-Occurrence Analysis

    PubMed Central

    Brodić, Darko; Milivojević, Zoran N.; Maluckov, Čedomir A.

    2013-01-01

    Any document in Serbian language can be written in two different scripts: Latin or Cyrillic. Although characteristics of these scripts are similar, some of their statistical measures are quite different. The paper proposed a method for the extraction of certain script from document according to the occurrence and co-occurrence of the script types. First, each letter is modeled with the certain script type according to characteristics concerning its position in baseline area. Then, the frequency analysis of the script types occurrence is performed. Due to diversity of Latin and Cyrillic script, the occurrence of modeled letters shows substantial statistics dissimilarity. Furthermore, the co-occurrence matrix is computed. The analysis of the co-occurrence matrix draws a strong margin as a criteria to distinguish and recognize the certain script. The proposed method is analyzed on the case of a database which includes different types of printed and web documents. The experiments gave encouraging results. PMID:24385887

  8. Allele mining and enhanced genetic recombination for rice breeding.

    PubMed

    Leung, Hei; Raghavan, Chitra; Zhou, Bo; Oliva, Ricardo; Choi, Il Ryong; Lacorte, Vanica; Jubay, Mona Liza; Cruz, Casiana Vera; Gregorio, Glenn; Singh, Rakesh Kumar; Ulat, Victor Jun; Borja, Frances Nikki; Mauleon, Ramil; Alexandrov, Nickolai N; McNally, Kenneth L; Sackville Hamilton, Ruaraidh

    2015-12-01

    Traditional rice varieties harbour a large store of genetic diversity with potential to accelerate rice improvement. For a long time, this diversity maintained in the International Rice Genebank has not been fully used because of a lack of genome information. The publication of the first reference genome of Nipponbare by the International Rice Genome Sequencing Project (IRGSP) marked the beginning of a systematic exploration and use of rice diversity for genetic research and breeding. Since then, the Nipponbare genome has served as the reference for the assembly of many additional genomes. The recently completed 3000 Rice Genomes Project together with the public database (SNP-Seek) provides a new genomic and data resource that enables the identification of useful accessions for breeding. Using disease resistance traits as case studies, we demonstrated the power of allele mining in the 3,000 genomes for extracting accessions from the GeneBank for targeted phenotyping. Although potentially useful landraces can now be identified, their use in breeding is often hindered by unfavourable linkages. Efficient breeding designs are much needed to transfer the useful diversity to breeding. Multi-parent Advanced Generation InterCross (MAGIC) is a breeding design to produce highly recombined populations. The MAGIC approach can be used to generate pre-breeding populations with increased genotypic diversity and reduced linkage drag. Allele mining combined with a multi-parent breeding design can help convert useful diversity into breeding-ready genetic resources. PMID:26606925

  9. Breeding productivity and adult survival in nongame birds

    USGS Publications Warehouse

    Martin, Thomas E.; DeSante, David F.; Paine, Charles R.; Donovan, Therese M.; Dettmers, Randy; Manolis, J.C.; Burton, K.

    1995-01-01

    Demographic data (breeding productivity and adult survival) provide the kind of early warning signal that allows detection of unhealthy populations in terms of productivity or survival problems (Martin and Guepel 1993). In addition, demographic data can help determine whether population declines are the result of low breeding productivity or low survival in migration or winter. Breeding productivity data also can help identify habitat conditions associated with successful and failed breeding attempts. Such information is critical for developing habitat- and land-management practices (Martin 1992). Here, we provide examples of the kinds of information that can be obtained by broad-scale demographic studies.

  10. Subadult and pale steppe eagles breeding in Mongolia

    USGS Publications Warehouse

    Ellis, D.H.; Clark, W.S.

    2003-01-01

    One pale morph and two rufous-tawny morph Steppe Eagles (Aquila rapax) were observed among about 20 breeding pairs found in Mongolia. All three were attending live young. Plumage features of the rufous-tawny birds suggest that they were not adults. Subadult breeding is thereby documented for the Steppe Eagle. Breeding is also documented for a pale morph bird, but the age of this bird is uncertain; either it was the first pale morph adult known for the species or, more likely, it represents breeding of a two-, three-, or four-year old bird.

  11. Targeted Proteomics Approach for Precision Plant Breeding.

    PubMed

    Chawade, Aakash; Alexandersson, Erik; Bengtsson, Therese; Andreasson, Erik; Levander, Fredrik

    2016-02-01

    Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that enables precise quantitation of hundreds of peptides in a single run. This technique provides new opportunities for multiplexed protein biomarker measurements. For precision plant breeding, DNA-based markers have been used extensively, but the potential of protein biomarkers has not been exploited. In this work, we developed an SRM marker panel with assays for 104 potato (Solanum tuberosum) peptides selected using univariate and multivariate statistics. Thereafter, using random forest classification, the prediction markers were identified for Phytopthora infestans resistance in leaves, P. infestans resistance in tubers, and plant yield in potato leaf secretome samples. The results suggest that the marker panel has the predictive potential for three traits, two of which have no commercial DNA markers so far. Furthermore, the marker panel was also tested and found to be applicable to potato clones not used during the marker development. The proposed workflow is thus a proof-of-concept for targeted proteomics as an efficient readout in accelerated breeding for complex and agronomically important traits. PMID:26704985

  12. Circannual Testis Changes in Seasonally Breeding Mammals.

    PubMed

    Jiménez, Rafael; Burgos, Miguel; Barrionuevo, Francisco J

    2015-01-01

    In the non-equatorial zones of the Earth, species concentrate their reproductive effort in the more favorable season. A consequence of seasonal breeding is seasonal testis regression, which implies the depletion of the germinative epithelium, permeation of the blood-testis barrier, and reduced androgenic function. This process has been studied in a number of vertebrates, but the mechanisms controlling it are not yet well understood. Apoptosis was assumed for years to be an important effector of seasonal germ cell depletion in all vertebrates, including mammals, but an alternative mechanism has recently been reported in the Iberian mole as well as in the large hairy armadillo. It is based on the desquamation of meiotic and post-meiotic germ cells as a consequence of altered Sertoli-germ cell adhesion molecule expression and distribution. Desquamated cells are either discarded alive through the epididymis, as in the mole, or subsequently die by apoptosis, as in the armadillo. Also, recent findings on the reproductive cycle of the greater white-toothed shrew at the meridional limits of its distribution area have revealed that the mechanisms controlling seasonal breeding are in fact far more plastic and versatile than initially suspected. Perhaps these higher adaptive capacities place mammals in a better position to face the ongoing climate change. PMID:26375035

  13. Sugars in peach fruit: a breeding perspective.

    PubMed

    Cirilli, Marco; Bassi, Daniele; Ciacciulli, Angelo

    2016-01-01

    The last decade has been characterized by a decrease in peach (Prunus persica) fruit consumption in many countries, foremost due to unsatisfactory quality. The sugar content is one of the most important quality traits perceived by consumers, and the development of novel peach cultivars with sugar-enhanced content is a primary objective of breeding programs to revert the market inertia. Nevertheless, the progress reachable through classical phenotypic selection is limited by the narrow genetic bases of peach breeding material and by the complex quantitative nature of the trait, which is deeply affected by environmental conditions and agronomical management. The development of molecular markers applicable in MAS or MAB has become an essential strategy to boost the selection efficiency. Despite the enormous advances in 'omics' sciences, providing powerful tools for plant genotyping, the identification of the genetic bases of sugar-related traits is hindered by the lack of adequate phenotyping methods that are able to address strong within-plant variability. This review provides an overview of the current knowledge of the metabolic pathways and physiological mechanisms regulating sugar accumulation in peach fruit, the main advances in phenotyping approaches and genetic background, and finally addressing new research priorities and prospective for breeders. PMID:26816618

  14. Tornadic storm avoidance behavior in breeding songbirds.

    PubMed

    Streby, Henry M; Kramer, Gunnar R; Peterson, Sean M; Lehman, Justin A; Buehler, David A; Andersen, David E

    2015-01-01

    Migration is a common behavior used by animals of many taxa to occupy different habitats during different periods. Migrant birds are categorized as either facultative (i.e., those that are forced to migrate by some proximal cue, often weather) or obligate (i.e., those that migrate on a regular cycle). During migration, obligate migrants can curtail or delay flights in response to inclement weather or until favorable winds prevail, and they can temporarily reorient or reverse direction when ecological or meteorological obstacles are encountered. However, it is not known whether obligate migrants undertake facultative migrations and make large-scale movements in response to proximal cues outside of their regular migration periods. Here, we present the first documentation of obligate long-distance migrant birds undertaking a facultative migration, wherein breeding golden-winged warblers (Vermivora chrysoptera) carrying light-level geolocators performed a >1,500 km 5-day circumvention of a severe tornadic storm. The birds evacuated their breeding territories >24 hr before the arrival of the storm and atmospheric variation associated with it. The probable cue, radiating >1,000 km from tornadic storms, perceived by birds and influencing bird behavior and movements, is infrasound (i.e., sound below the range of human hearing). With the predicted increase in severity and frequency of similar storms as anthropogenic climate change progresses, understanding large-scale behavioral responses of animals to such events will be an important objective of future research. PMID:25532897

  15. Sugars in peach fruit: a breeding perspective

    PubMed Central

    Cirilli, Marco; Bassi, Daniele; Ciacciulli, Angelo

    2016-01-01

    The last decade has been characterized by a decrease in peach (Prunus persica) fruit consumption in many countries, foremost due to unsatisfactory quality. The sugar content is one of the most important quality traits perceived by consumers, and the development of novel peach cultivars with sugar-enhanced content is a primary objective of breeding programs to revert the market inertia. Nevertheless, the progress reachable through classical phenotypic selection is limited by the narrow genetic bases of peach breeding material and by the complex quantitative nature of the trait, which is deeply affected by environmental conditions and agronomical management. The development of molecular markers applicable in MAS or MAB has become an essential strategy to boost the selection efficiency. Despite the enormous advances in ‘omics’ sciences, providing powerful tools for plant genotyping, the identification of the genetic bases of sugar-related traits is hindered by the lack of adequate phenotyping methods that are able to address strong within-plant variability. This review provides an overview of the current knowledge of the metabolic pathways and physiological mechanisms regulating sugar accumulation in peach fruit, the main advances in phenotyping approaches and genetic background, and finally addressing new research priorities and prospective for breeders. PMID:26816618

  16. Genetic structure of goat breeds from Brazil and the United States: Implications for conservation and breeding programs.

    PubMed

    Carvalho, G M C; Paiva, S R; Araújo, A M; Mariante, A; Blackburn, H D

    2015-10-01

    The objective of this study was to assess genetic diversity among 5 Brazilian (155 animals) and 5 U.S. goat (120 animals) breeds using 23 microsatellite markers. Samples from the United States represented a broad geographic distribution whereas Brazilian samples were from the northeast region. Samples from Boer were common to each country's breed count. Expected and observed heterozygosity among breeds ranged from 0.55 to 0.72, suggesting ample genetic diversity in the breeds evaluated. United States Angora, U.S. Spanish, and Brazilian Nambi ranked highest for allelic richness, averaging 6.1, 7.1, and 6.5 alleles per locus, respectively. Angora and Spanish also ranked highest in private alleles (7 and 9, respectively). Using STRUCTURE, the U.S. Spanish were also found to share a common cluster assignment with Brazilian Nambi, suggesting that progenitor breeds may have been the same and passed through the Canary Islands or Cape Verde in route to the New World. When non-Boer breeds were pooled by country, the effect of the subpopulation compared with total population () = 0.05, suggesting minor genetic differences exist between countries. The lack of genetic structure among goat breeds when compared with other species (e.g., vs. ) suggests goat breeds may exhibit a plasticity that facilitates productivity across a wide range of countries and environments. Taken a step further, the concept of breed for meat goats may not be as relevant for goat production. PMID:26523555

  17. 9 CFR 151.10 - Recognition of additional breeds and books of record.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Recognition of additional breeds and... SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Recognition of Breeds and Books of Record § 151.10 Recognition of additional breeds and books...

  18. 9 CFR 151.10 - Recognition of additional breeds and books of record.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Recognition of additional breeds and... SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Recognition of Breeds and Books of Record § 151.10 Recognition of additional breeds and books...

  19. 9 CFR 151.10 - Recognition of additional breeds and books of record.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false Recognition of additional breeds and... SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Recognition of Breeds and Books of Record § 151.10 Recognition of additional breeds and books...

  20. 9 CFR 151.10 - Recognition of additional breeds and books of record.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Recognition of additional breeds and... SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Recognition of Breeds and Books of Record § 151.10 Recognition of additional breeds and books...

  1. Is income breeding an appropriate construct for waterfowl?

    USGS Publications Warehouse

    Janke, Adam K.; Anteau, Michael J.; Markl, Nicholas; Stafford, Joshua D.

    2015-01-01

    Breeding birds use a range of nutrient accumulation and allocation strategies to meet the nutritional demands of clutch formation and incubation. On one end of the spectrum, capital breeders use stored nutrients acquired prior to clutch formation and incubation to sustain metabolism during reproduction, while on the opposite end, income breeders derive nutrients solely from exogenous sources on the breeding grounds. Blue-winged Teal (Anas discors) are an ideal candidate to test for adoption of an income strategy among migratory waterfowl because of their small body size, temperate breeding range, and timing of reproduction relative to pulses in nutrient availability within breeding habitats. We collected migrating and pre-breeding Blue-winged Teal (n = 110) during the warmest spring in over a century in the southern edge of the species’ breeding range, which produced ideal conditions to test for adoption of an income breeding strategy among migratory waterfowl. Regression analyses revealed that females accumulated protein and fat reserves early in follicle development and appeared to mobilize at least some reserves coincident with the onset of clutch formation. Accumulation and subsequent mobilization of nutrient reserves was inconsistent with adherence to an income breeding strategy and suggested breeding Blue-winged Teal used capital (albeit locally acquired) for reproduction. Our results add to existing knowledge on the ubiquity of endogenous nutrient reserve accumulation prior to and during reproduction by waterfowl, perhaps suggesting endogenous nutrient reserves are universally used for clutch formation or incubation to some degree. If indeed Blue-winged Teal and other waterfowl universally use capital for breeding, research and conservation efforts should shift from evaluating whether an income breeding strategy is used and focus on when and where necessary capital is acquired prior to clutch formation.

  2. Integrating occupancy models and structural equation models to understand species occurrence.

    PubMed

    Joseph, Maxwell B; Preston, Daniel L; Johnson, Pieter T J

    2016-03-01

    Understanding the drivers of species occrrece s a fundamenal goal in basic and applied ecology. Occupancy models have emerged as a popular approach for inferring species occurrence because they account for problems associated with imperfect detection in field surveys. Current models, however, are limited because they assume covariates are independent (i.e., indirect effects do not occur). Here, we combined structural equation and occupancy models to investigate complex influences on species occurrence while accounting for imperfect detection. These two methods are inherently compatible because they both provide means to make inference on latent or unobserved quantities based on observed data. Our models evaluated the direct and indirect roles of cattle grazing, water chemistry, vegetation, nonnative fishes, and pond permanence on the occurrence of six pond-breeding amphibians, two of which are threatened: the California tiger salamander (Ambysloma californiense) and the California red-legged frog (Rana draytonil). While cattle had strong effects on pond vegetation and water chemistry, their overall effects on amphibian occurrence were small compared to the consistently negative effects of nonnative fish. Fish strongly reduced occurrence probabilities for four of five native amphibians, including both species of conservation concern. These results could help to identify drivers of amphibian declines and to prioritize strategies for amphibian conservation. More generally, this approach facilitates a more mechanistic representation of ideas about the causes of species distributions in space and time. As shown here, occupancy modeling and structural equation modeling are readily combined, and bring rich sets of techniques that may provide unique theoretical and applied insights into basic ecological questions. PMID:27197402

  3. Forest Pest Occurrence Predictionca-Markov Model

    NASA Astrophysics Data System (ADS)

    Xie, Fangyi; Zhang, Xiaoli; Chen, Xiaoyan

    Since the spatial pattern of forest pest occurrence is determined by biological characteristics and habitat conditions, this paper introduced construction of a cellular automaton model combined with Markov model to predicate the forest pest occurrence. Rules of the model includes the cell states rules, neighborhood rules and transition rules which are defined according to the factors from stand conditions, stand structures, climate and the influence of the factors on the state conversion. Coding for the model is also part of the implementations of the model. The participants were designed including attributes and operations of participants expressed with a UML diagram. Finally, the scale issues on forest pest occurrence prediction, of which the core are the prediction of element size and time interval, are partly discussed in this paper.

  4. Simulation of Storm Occurrences Using Simulated Annealing.

    NASA Astrophysics Data System (ADS)

    Lokupitiya, Ravindra S.; Borgman, Leon E.; Anderson-Sprecher, Richard

    2005-11-01

    Modeling storm occurrences has become a vital part of hurricane prediction. In this paper, a method for simulating event occurrences using a simulated annealing algorithm is described. The method is illustrated using annual counts of hurricanes and of tropical storms in the Atlantic Ocean and Gulf of Mexico. Simulations closely match distributional properties, including possible correlations, in the historical data. For hurricanes, traditionally used Poisson and negative binomial processes also predict univariate properties well, but for tropical storms parametric methods are less successful. The authors determined that simulated annealing replicates properties of both series. Simulated annealing can be designed so that simulations mimic historical distributional properties to whatever degree is desired, including occurrence of extreme events and temporal patterning.

  5. The effect of physical water quality and water level changes on the occurrence and density of Anopheles mosquito larvae around the shoreline of the Koka reservoir, central Ethiopia

    NASA Astrophysics Data System (ADS)

    Teklu, B. M.; Tekie, H.; McCartney, M.; Kibret, S.

    2010-12-01

    Entomological studies to determine the effect of the physical characteristics of mosquito larval breeding water bodies and reservoir water level changes on the occurrence of Anopheles mosquito larvae were conducted in two villages at Koka reservoir in central Ethiopia between August and December 2007. Of the two study villages, Ejersa is located close to the reservoir, and Kuma is 5 km away from it. Data on the type, number and physical characteristics of Anopheles larval breeding habitat, species composition and densities of anopheles mosquitoes in and around the study villages were investigated and recorded. Meteorological and reservoir water level data were compared with availability of Anopheles larval breeding sites and densities. Entomological data, derived from weekly larval collections, showed that Anopheles pharoensis Theobald, Anopheles gambiae s.l. Giles, Anopheles coustani Laveran and Anopheles squamosus Theobald were breeding in the study area. The mean larval density of An. gambiae s.l. in this study was higher in slightly turbid and shallow aquatic habitat than in turbid and relatively deep aquatic habitat. The density of An. pharoensis in habitat with floating vegetation and with relatively shady conditions was significantly higher than that of less shaded aquatic habitat and greater emergent vegetation. There was also a positive correlation between the occurrence of Anopheles larvae with the water and daily minimum atmospheric temperature. Similarly at Ejersa, over the sampling period, there was a positive correlation between falling reservoir water levels and the number of positive breeding habitats. These results confirm that physical characteristics of the water bodies play an important role in the species composition, total Anopheles larval count, and the density of Anopheles mosquitoes. Suitable breeding habitat in the vicinity of the reservoir village was strongly associated with the reservoir. This is particularly important for An

  6. Genomic selection in forage breeding: designing an estimation population

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The benefits of genomic selection to livestock, crops and forest tree breeding can be extended to forage grasses and legumes. The main benefits expected are increased selection accuracy and reduced costs per unit of genotype evaluated and breeding cycle length. Aiming at designing a training populat...

  7. Unequal Contribution of Sexes in the Origin of Dog Breeds

    PubMed Central

    Sundqvist, A.-K.; Björnerfeldt, S.; Leonard, J. A.; Hailer, F.; Hedhammar, Å.; Ellegren, H.; Vilà, C.

    2006-01-01

    Dogs (Canis familiaris) were domesticated from the gray wolf (Canis lupus) at least 14,000 years ago, and there is evidence of dogs with phenotypes similar to those in modern breeds 4000 years ago. However, recent genetic analyses have suggested that modern dog breeds have a much more recent origin, probably <200 years ago. To study the origin of contemporaneous breeds we combined the analysis of paternally inherited Y chromosome markers with maternally inherited mitochondrial DNA and biparentally inherited autosomal microsatellite markers in both domestic dogs and their wild ancestor, the gray wolf. Our results show a sex bias in the origin of breeds, with fewer males than females contributing genetically, which clearly differs from the breeding patterns in wild gray wolf populations where both sexes have similar contributions. Furthermore, a comparison of mitochondrial DNA and Y chromosome diversity in dog groups recognized by the World Canine Organization, as well as in groups defined by the breeds' genetic composition, shows that paternal lineages are more differentiated among groups than maternal lineages. This demonstrates a lower exchange of males than of females between breeds belonging to different groups, which illustrates how breed founders may have been chosen. PMID:16219789

  8. 50 CFR 15.26 - Approval of cooperative breeding programs.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... WILDLIFE AND PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15... may approve cooperative breeding programs. Such approval will allow individuals to import exotic birds... exotic bird(s) to be imported or to be covered under the program, including the common and...

  9. Integration of DNA marker information into breeding value predictions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Calves from seven breeds including 20 herds were genotyped with a reduced DNA marker panel for weaning weight. The marker panel used was derived using USMARC Cycle VII animals. The results from the current study suggest marker effects are not robust across breeds and that methodology exists to integ...

  10. Acceleration of peanut breeding programs by molecular marker assisted selection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Peanut breeding has played a significant role in yield increases and disease control. Conventional breeding focuses on field selection and phenotypic analysis and it typically takes 12-15 years before a new cultivar can be released. Molecular markers developed from sequencing data can be of great ...

  11. Modern biotechnology and the future of plant breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genetic improvement of crop plants has been traditionally achieved through conventional plant breeding. The art of plant breeding was developed long before the laws of genetics (the science of heredity) became known. The discovery of the principles of genetics at the turn of the last century boosted...

  12. The development of genomics applied to dairy breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genomic selection (GS) has profoundly changed dairy cattle breeding in the last decade and can be defined as the use of genomic breeding values (GEBV) in selection programs. The GEBV is the sum of the effects of dense DNA markers across the whole genome, capturing all the quantitative trait loci (QT...

  13. Overview of breeding and enhancement activities at East Lansing, Michigan

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The ARS breeding and germplasm enhancement program at East Lansing, Michigan has been active for over 50 years, and was instrumental in breeding for resistance to Aphanomyces seedling disease, germplasm conversion for hybrid seed production, and developing smooth-root germplasm to reduce soil tare. ...

  14. Tilting at windmills: 20 years of Hippeastrum breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hippeastrum Herbert, amaryllis, has yielded popular large-flowered hybrids over a 200-year breeding history, with the Netherlands and South Africa currently dominating the market. The USDA breeding program is now almost ten years old, built upon a ten-year previous history at the University of Flori...

  15. Sugar Beet Breeding - Where are We Going from Here?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    USDA-Agricultural Research Service plant breeders generally do pre-breeding, but today we will talk a little about what the future holds for new varieties and directions in commercial plant breeding. This presentation is my vision, not a presentation from a seed company, and we will talk about trend...

  16. The dwarf saltwort (Salicornia bigelovii Torr.): Evaluation of breeding populations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Breeding populations of the dwarf saltwort (Salicornia bigelovii Torr. [Chenopodiaceae]) have been evaluated under high seawater salinity (45 dS m-1) for phenotypic, morphometric, biomass and seed traits in an effort to select suitable families and genotypes within families for breeding purposes and...

  17. Developing resources for diploid potato breeding and genetics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The cultivated potato (Solanum tuberosum Gp. tuberosum) is an asexually propagated cross-pollinated autotetraploid crop, for which breeding methodology has not changed in 100 years. Current methods for breeding potato cultivars are genetically inefficient due to polyploidy, resource intensive due to...

  18. Increasing the Oleic Acid in Soybean Oil with Plant Breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Increasing the oleic acid content along with decrease in linolenic acid can improve the oxidative stability of soybean oil. Genetic changes in soybean using standard plant breeding practices has resulted in a publicly released a mid-oleic breeding line, N98-4445A, with oil that averages 57% oleic ac...

  19. 50 CFR 15.26 - Approval of cooperative breeding programs.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... WILDLIFE AND PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15... may approve cooperative breeding programs. Such approval will allow individuals to import exotic birds... exotic bird(s) to be imported or to be covered under the program, including the common and...

  20. Status of genetic diversity of U. S. dairy goat breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genetic diversity underpins the livestock breeders’ ability to improve the production potential of their livestock. Therefore, it is important to periodically assess genetic diversity within a breed. Such an analysis was conducted on U.S. dairy goat breeds: Alpine, LaMancha, Nigerian Dwarf, Nubian, ...

  1. The contribution of traditional potato breeding to scientific potato improvement

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Conventional potato breeding refers to development of new cultivars from sexual crosses followed by clonal propagation and selection. Nearly all new varieties of potato still emerge from this process free from modern technologies of gene insertion. Conventional breeding remains the most important ...

  2. Utilizing Natural Crosses in a Guayule Breeding Program.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Guayule (Parthenium argentatum Gray) is a perennial shrub native to the Chihuahuan Desert. Apomictic reproduction in guayule makes breeding progress difficult. Breeding methods to take advantage of the facultative apomixis and occasional sexual reproduction that occurs in guayule are needed for fast...

  3. Breed Composition of the United States Dairy Cattle Herd

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Breed composition of the gene pool of all cows (purebred and crossbred) with pedigree data in the USDA national dairy database was summarized by birth year of cow. Partial breed contributions were assigned for individual cows. For cows born in 2005, 1.1% of all genes and 35.1% of genes in crossbreds...

  4. The Future of Cotton Breeding in the Western United States.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Traditional breeding efforts dramatically transformed the cotton (Gossypium spp.) plant during the last century. In the coming decade, the high priority breeding objectives for production regions of the western U.S. (far-western Texas, New Mexico, Arizona, and California) will involve morphologicall...

  5. Status of genetic diversity of U. S. dairy goat breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genetic diversity underpins the livestock breeders’ ability to improve the production potential of their livestock. Therefore, it is important to periodically assess genetic diversity within a breed. Such an analysis was conducted on U.S. dairy goat breeds and this article is an overview of that wo...

  6. Selection methods in forage breeding: a quantitative appraisal

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Forage breeding can be extraordinarily complex because of the number of species, perenniality, mode of reproduction, mating system, and the genetic correlation for some traits evaluated in spaced plants vs. performance under cultivation. Aiming to compare eight forage breeding methods for direct sel...

  7. Signatures of Diversifying Selection in European Pig Breeds

    PubMed Central

    Wilkinson, Samantha; Lu, Zen H.; Megens, Hendrik-Jan; Archibald, Alan L.; Haley, Chris; Jackson, Ian J.; Groenen, Martien A. M.; Crooijmans, Richard P. M. A.; Ogden, Rob; Wiener, Pamela

    2013-01-01

    Following domestication, livestock breeds have experienced intense selection pressures for the development of desirable traits. This has resulted in a large diversity of breeds that display variation in many phenotypic traits, such as coat colour, muscle composition, early maturity, growth rate, body size, reproduction, and behaviour. To better understand the relationship between genomic composition and phenotypic diversity arising from breed development, the genomes of 13 traditional and commercial European pig breeds were scanned for signatures of diversifying selection using the Porcine60K SNP chip, applying a between-population (differentiation) approach. Signatures of diversifying selection between breeds were found in genomic regions associated with traits related to breed standard criteria, such as coat colour and ear morphology. Amino acid differences in the EDNRB gene appear to be associated with one of these signatures, and variation in the KITLG gene may be associated with another. Other selection signals were found in genomic regions including QTLs and genes associated with production traits such as reproduction, growth, and fat deposition. Some selection signatures were associated with regions showing evidence of introgression from Asian breeds. When the European breeds were compared with wild boar, genomic regions with high levels of differentiation harboured genes related to bone formation, growth, and fat deposition. PMID:23637623

  8. Improving shelf life of blackberries through conventional breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The University of Arkansas began blackberry breeding in 1964, and fruit breeder James N. Moore envisioned vast improvement of this "native" southern U.S. crop through crossing and selection of existing germplasm. He used the recurrent mass selection system of breeding, a system that utilizes the cro...

  9. Applying Selective Breeding And Vaccination To Improve Fish Health

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Infectious disease causes substantial economic loss in aquaculture. In an effort to reduce loss, selective breeding of animals with superior disease resistance is being increasingly utilized as a component within fish health management plans. Selective breeding is especially applicable to salmonid ...

  10. Selective breeding of food size rainbow trout against Flavobacteriosis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Selective breeding of rainbow trout is an important component of an integrated fish health management program. The current goals of our selective breeding program are to improve disease resistance, growth and survival in a reuse water environment. To improve these traits, data are recorded on thousa...

  11. Selective breeding of food sized rainbow trout against Flavobacteriosis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Selective breeding of rainbow trout is an important component of an integrated fish health management program. The current goals of our selective breeding program are to improve disease resistance, growth and survival in a reuse water environment. To improve these traits, data are recorded on thousa...

  12. Effects of breeding success, mate fidelity and senescence on breeding dispersal of male and female blue-footed boobies.

    PubMed

    Kim, Sin-Yeon; Torres, Roxana; Rodríguez, Cristina; Drummond, Hugh

    2007-05-01

    1. Understanding the effects of individual and population factors on variation in breeding dispersal (the movement of individuals between successive breeding sites) is key to identifying the strategies behind breeders' movements. Dispersal is often influenced by multiple factors and these can be confounded with each other. We used 13 years of data on the locations, mates, breeding success and ages of individuals to tease apart the factors influencing breeding dispersal in a colonially breeding long-lived seabird, the blue-footed booby Sula nebouxii. 2. Breeding dispersal varied among and within years. Males dispersed further in years of higher population density, and late breeding males and females dispersed further than early breeders. This temporal variation related to changes in competition for territory was taken into account in all tests of individual factors influencing breeding dispersal. 3. Individuals that retained their mates from the previous year dispersed shorter distances than those that changed their mates. 4. The effect of previous breeding success depended on mate fidelity. Unsuccessful breeding induced greater dispersal in birds that changed their mates but not in birds that retained their mates, indicating that breeders who change mates may take their own previous breeding experience into account during habitat selection. Faithful individuals may have to stay close to their previous sites to encounter their mates. 5. Male divorcees dispersed over shorter distances than their former mates, possibly because males contribute more than females to establishing territories. 6. Dispersal of males and females declined with increasing age over the first 10-11 years of life, then increased in old age, possibly due to senescent decay in the ability to compete for mates and territories. PMID:17439464

  13. Breeding biology and nesting success of palila

    USGS Publications Warehouse

    Pletschet, S.M.; Kelly, J.F.

    1990-01-01

    We studied the breeding biology of Palila (Loxioides bailleui ) at 85 nests from 20 April to 14 September 1988. Eggs were laid over a 139-day period and incubation averaged 16.6 days. The female incubated 85.2% of daylight hours and males fed incubating females. Modal clutch size was 2 (x super(-) = 2.0) and an average of 1.4 nestlings fledged per successful nest. Nestlings were in the nest an average of 25.3 days. Both females and males fed nestlings with the rate of feeding decreasing as the nestlings grew older. Palila nesting success was 25%, reduced primarily by hatching failure and depredation of nestlings. Hatching failure, due to inviable eggs or desertion, occurred in 41% of nests with eggs (55% of nest mortality). Egg depredation was rare (5% of nest mortality). Inbreeding and low food availability are postulated as the major causes for poor hatching success.

  14. Radiation-induced mutations and plant breeding

    SciTech Connect

    Naqvi, S.H.M.

    1985-01-01

    Ionizing radiation could cause genetic changes in an organism and could modify gene linkages. The induction of mutation through radiation is random and the probability of getting the desired genetic change is low but can be increased by manipulating different parameters such as dose rate, physical conditions under which the material has been irradiated, etc. Induced mutations have been used as a supplement to conventional plant breeding, particularly for creating genetic variability for specific characters such as improved plant structure, pest and disease resistance, and desired changes in maturity period; more than 200 varieties of crop plants have been developed by this technique. The Pakistan Atomic Energy Commission has used this technique fruitfully to evolve better germplasm in cotton, rice, chickpea, wheat and mungbean; some of the mutants have become popular commercial varieties. This paper describes some uses of radiation induced mutations and the results achieved in Pakistan so far.

  15. Thermomechanical analysis of the ITER breeding blanket

    SciTech Connect

    Majumdar, S.; Gruhn, H.; Gohar, Y.; Giegerich, M.

    1997-03-01

    Thermomechanical performance of the ITER breeding blanket is an important design issue because it requires first, that the thermal expansion mismatch between the blanket structure and the blankets internals (such as, beryllium multiplier and tritium breeders) can be accommodated without creating high stresses, and second, that the thermomechanical deformation of various interfaces within the blanket does not create high resistance to heat flow and consequent unacceptably high temperatures in the blanket materials. Thermomechanical analysis of a single beryllium block sandwiched between two stainless steel plates was carried out using the finite element code ABAQUS to illustrate the importance of elastic deformation on the temperature distributions. Such an analysis for the whole ITER blanket needs to be conducted in the future. Uncertainties in the thermomechanical contact analysis can be reduced by bonding the beryllium blocks to the stainless steel plates by a thin soft interfacial layer.

  16. Relative importance of habitat area and isolation for bird occurrence patterns in a naturally patchy landscape

    USGS Publications Warehouse

    Wilson, T.L.; Johnson, E.J.; Bissonette, J.A.

    2009-01-01

    There is debate among ecologists about whether total habitat area or patch arrangement contributes most to population and/or community responses to fragmented or patchy landscapes. We tested the relative effects of patch area and isolation for predicting bird occurrence in a naturally patchy landscape in the Bear River Mountains of Northern Utah, USA. We selected focal patches (mountain meadows) ranging in elevation from 1,920 to 2,860 m and in size from 0.6 to 182 ha. Breeding birds were sampled in each focal meadow during the summers of 2003 and 2004 using variable-distance point transects. Logistic regression and likelihood-based model selection were used to determine the relationship between likelihood of occurrence of three bird species (Brewer's sparrow, vesper sparrow, and white-crowned sparrow) and area, isolation, and proximity metrics. We used model weights and model-averaged confidence intervals to assess the importance of each predictor variable. Plots of area versus isolation were used to evaluate complex relationships between the variables. We found that meadow area was the most important variable for explaining occurrence for two species, and that isolation was the most important for the other. We also found that the absolute distance was more appropriate for evaluating isolation responses than was the species-specific proximity metric. Our findings add clarity to the debate between ecologists regarding the relative importance of area and isolation in species responses to patchy landscapes.

  17. Chewing rates among domestic dog breeds

    PubMed Central

    Gerstner, Geoffrey E.; Cooper, Meghan; Helvie, Peter

    2010-01-01

    The mammalian masticatory rhythm is produced by a brainstem timing network. The rhythm is relatively fixed within individual animals but scales allometrically with body mass (Mb) across species. It has been hypothesized that sensory feedback and feed-forward adjust the rhythm to match the jaw's natural resonance frequency, with allometric scaling being an observable consequence. However, studies performed with adult animals show that the rhythm is not affected by jaw mass manipulations, indicating that either developmental or evolutionary mechanisms are required for allometry to become manifest. The present study was performed to tease out the relative effects of development versus natural selection on chewing rate allometry. Thirty-one dog breeds and 31 mass-matched non-domestic mammalian species with a range in Mb from ∼2 kg to 50 kg were studied. Results demonstrated that the chewing rhythm did not scale with Mb among dog breeds (R=0.299, P>0.10) or with jaw length (Lj) (R=0.328, P>0.05). However, there was a significant relationship between the chewing rhythm and Mb among the non-domestic mammals (R=0.634, P<0.001). These results indicate that scaling is not necessary in the adult animal. We conclude that the central timing network and related sensorimotor systems may be necessary for rhythm generation but they do not explain the 1/3rd to 1/4th allometric scaling observed among adult mammals. The rhythm of the timing network is either adjusted to the physical parameters of the jaw system during early development only, is genetically determined independently of the jaw system or is uniquely hard-wired among dogs and laboratory rodents. PMID:20543125

  18. Applying breeding objectives to dairy cattle improvement.

    PubMed

    Dekkers, J C; Gibson, J P

    1998-09-01

    Otherwise well-researched definitions of breeding objectives and selection criteria may never be used in practice if those definitions do not take into account the perceptions and wishes of the breeders for whom they are designed. Finding selection criteria that are widely accepted and implemented is a daunting task that requires considerable time and full interaction between the scientists and the industry. We review various aspects of this process and, in particular, how scientific principles can be used to ensure that the outcome best meets both the perceptions and needs of the users while remaining as close as possible to the technical economic optimum. Alternative methods of presenting and delivering selection indexes, such as index expression, index formulation, focus on response to selection rather than on index weights, construction of component indexes, and the use of direct accounting for costs of constraints rather than rescaling methods can all help in improving acceptance of an index. Development and implementation of selection criteria also involve consideration of the selective mating decisions that form an integral part of selection decisions in the field. The technical basis of factors that foster emphasis on individual mating decisions in the field are discussed in relation to formulation of the breeding goal and selection index and in relation to nonlinear economic and genetic parameters. Strategies that focus on use of a linear index for the selection of sires and dams followed by selective mating of selected parents have the greatest potential for implementation in the industry. We focus on examples taken from the Canadian dairy industry, but principles apply generally. PMID:9777509

  19. Population structure of four Thai indigenous chicken breeds

    PubMed Central

    2014-01-01

    Background In recent years, Thai indigenous chickens have increasingly been bred as an alternative in Thailand poultry market. Due to their popularity, there is a clear need to improve the underlying quality and productivity of these chickens. Studying chicken genetic variation can improve the chicken meat quality as well as conserving rare chicken species. To begin with, a minimal set of molecular markers that can characterize the Thai indigenous chicken breeds is required. Results Using AFLP-PCR, 30 single nucleotide polymorphisms (SNPs) from Thai indigenous chickens were obtained by DNA sequencing. From these SNPs, we genotyped 465 chickens from 7 chicken breeds, comprising four Thai indigenous chicken breeds- Pradhuhangdum (PD), Luenghangkhao (LK), Dang (DA) and Chee (CH), one wild chicken - the red jungle fowls (RJF), and two commercial chicken breeds - the brown egg layer (BL) and commercial broiler (CB). The chicken genotypes reveal unique genetic structures of the four Thai indigenous chicken breeds. The average expected heterozygosities of PD= 0.341, LK= 0.357, DA=0.349 and CH= 0.373, while the references RJF= 0.327, CB=0.324 and BL= 0.285. The FST values among Thai indigenous chicken breeds vary from 0.051 to 0.096. The FST values between the pairs of Thai indigenous chickens and RJF vary from 0.083 to 0.105 and the FST values between the Thai indigenous chickens and the two commercial chicken breeds vary from 0.116 to 0.221. A neighbour-joining tree of all individual chickens showed that the Thai indigenous chickens were clustered into four groups which were closely related to the wild RJF but far from the commercial breeds. Such commercial breeds were split into two closely groups. Using genetic admixture analysis, we observed that the Thai indigenous chicken breeds are likely to share common ancestors with the RJF, while both commercial chicken breeds share the same admixture pattern. Conclusion These results indicated that the Thai indigenous chicken

  20. Southwestern Willow Flycatcher Breeding Site and Territory Summary - 2006

    USGS Publications Warehouse

    Durst, Scott L.; Sogge, Mark K.; Stump, Shay D.; Williams, Sartor O.; Kus, Barbara E.; Sferra, Susan J.

    2007-01-01

    Introduction The Southwestern Willow Flycatcher (Empidonax traillii extimus) is an endangered bird that breeds only in dense riparian habitats in six southwestern states (southern California, extreme southern Nevada, southern Utah, southwestern Colorado, Arizona, and New Mexico). Since 1993, hundreds of Southwestern Willow Flycatcher surveys have been conducted each year, and many new flycatcher breeding sites located. This document synthesizes information on all known Southwestern Willow Flycatcher breeding sites. This rangewide data synthesis was designed to meet these objectives: * identify all known Southwestern Willow Flycatcher breeding sites, and * assemble data on population size, location, habitat, and other information for all breeding sites, for as many years as possible, from 1993 through 2006. This report provides data summaries in terms of the number of flycatcher sites and the number of territories.

  1. Estimating survival and breeding probability for pond-breeding amphibians: a modified robust design

    USGS Publications Warehouse

    Bailey, L.L.; Kendall, W.L.; Church, D.R.; Wilbur, H.M.

    2004-01-01

    Many studies of pond-breeding amphibians involve sampling individuals during migration to and from breeding habitats. Interpreting population processes and dynamics from these studies is difficult because (1) only a proportion of the population is observable each season, while an unknown proportion remains unobservable (e.g., non-breeding adults) and (2) not all observable animals are captured. Imperfect capture probability can be easily accommodated in capture?recapture models, but temporary transitions between observable and unobservable states, often referred to as temporary emigration, is known to cause problems in both open- and closed-population models. We develop a multistate mark?recapture (MSMR) model, using an open-robust design that permits one entry and one exit from the study area per season. Our method extends previous temporary emigration models (MSMR with an unobservable state) in two ways. First, we relax the assumption of demographic closure (no mortality) between consecutive (secondary) samples, allowing estimation of within-pond survival. Also, we add the flexibility to express survival probability of unobservable individuals (e.g., ?non-breeders?) as a function of the survival probability of observable animals while in the same, terrestrial habitat. This allows for potentially different annual survival probabilities for observable and unobservable animals. We apply our model to a relictual population of eastern tiger salamanders (Ambystoma tigrinum tigrinum). Despite small sample sizes, demographic parameters were estimated with reasonable precision. We tested several a priori biological hypotheses and found evidence for seasonal differences in pond survival. Our methods could be applied to a variety of pond-breeding species and other taxa where individuals are captured entering or exiting a common area (e.g., spawning or roosting area, hibernacula).

  2. [The breeding of strawberries suited for freezing : I. Breeding potential and ecovalence of two "freezing" characteristics].

    PubMed

    Hondelmann, W

    1968-01-01

    Heritability in the broad sense, the expected genetic advance with selection and the repeatabilities for two freezing characteristics were estimated in strawberry clones (Fragaria ananassa Duch.) over several years. The freezing characteristics were extravasation of juice and texture of berries after thawing. It could be shown that after 12-15 years of breeding and selection there was still much genetic variance. An estimation of ecovalence for these characteristics showed that ecovalence depends on genetic diversity. PMID:24442065

  3. Vulnerability of breeding waterbirds to climate change in the Prairie Pothole Region, U.S.A.

    PubMed

    Steen, Valerie; Skagen, Susan K; Noon, Barry R

    2014-01-01

    The Prairie Pothole Region (PPR) of the north-central U.S. and south-central Canada contains millions of small prairie wetlands that provide critical habitat to many migrating and breeding waterbirds. Due to their small size and the relatively dry climate of the region, these wetlands are considered at high risk for negative climate change effects as temperatures increase. To estimate the potential impacts of climate change on breeding waterbirds, we predicted current and future distributions of species common in the PPR using species distribution models (SDMs). We created regional-scale SDMs for the U.S. PPR using Breeding Bird Survey occurrence records for 1971-2011 and wetland, upland, and climate variables. For each species, we predicted current distribution based on climate records for 1981-2000 and projected future distributions to climate scenarios for 2040-2049. Species were projected to, on average, lose almost half their current habitat (-46%). However, individual species projections varied widely, from +8% (Upland Sandpiper) to -100% (Wilson's Snipe). Variable importance ranks indicated that land cover (wetland and upland) variables were generally more important than climate variables in predicting species distributions. However, climate variables were relatively more important during a drought period. Projected distributions of species responses to climate change contracted within current areas of distribution rather than shifting. Given the large variation in species-level impacts, we suggest that climate change mitigation efforts focus on species projected to be the most vulnerable by enacting targeted wetland management, easement acquisition, and restoration efforts. PMID:24927165

  4. Vulnerability of Breeding Waterbirds to Climate Change in the Prairie Pothole Region, U.S.A

    PubMed Central

    Steen, Valerie; Skagen, Susan K.; Noon, Barry R.

    2014-01-01

    The Prairie Pothole Region (PPR) of the north-central U.S. and south-central Canada contains millions of small prairie wetlands that provide critical habitat to many migrating and breeding waterbirds. Due to their small size and the relatively dry climate of the region, these wetlands are considered at high risk for negative climate change effects as temperatures increase. To estimate the potential impacts of climate change on breeding waterbirds, we predicted current and future distributions of species common in the PPR using species distribution models (SDMs). We created regional-scale SDMs for the U.S. PPR using Breeding Bird Survey occurrence records for 1971–2011 and wetland, upland, and climate variables. For each species, we predicted current distribution based on climate records for 1981–2000 and projected future distributions to climate scenarios for 2040–2049. Species were projected to, on average, lose almost half their current habitat (-46%). However, individual species projections varied widely, from +8% (Upland Sandpiper) to -100% (Wilson's Snipe). Variable importance ranks indicated that land cover (wetland and upland) variables were generally more important than climate variables in predicting species distributions. However, climate variables were relatively more important during a drought period. Projected distributions of species responses to climate change contracted within current areas of distribution rather than shifting. Given the large variation in species-level impacts, we suggest that climate change mitigation efforts focus on species projected to be the most vulnerable by enacting targeted wetland management, easement acquisition, and restoration efforts. PMID:24927165

  5. Breeding implications resulting from classification of patellae luxation in dogs.

    PubMed

    van Grevenhof, E M; Hazewinkel, H A W; Heuven, H C M

    2016-08-01

    Patellar luxation (PL) is one of the major hereditary orthopaedic abnormalities observed in a variety of dog breeds. When the patellae move sideways out of the trochlear groove, this is called PL. The PL score varies between dogs from normal to very severe. Reducing the prevalence of PL by breeding could prevent surgery, thereby improve welfare. Orthopaedic specialists differentiate between normal and loose patellae, where the patellae can be moved to the edge of the trochlear groove, considering scoring loose patellae as normal in the future. Loose patellae are considered acceptable for breeding so far by the breeding organization. The aim of this study was to analyse the genetic background of PL to decide on the importance of loose patellae when breeding for healthy dogs. Data are available from two dog breeds, that is Flat-coated Retrievers (n = 3808) and Kooiker dogs (n = 794), with a total of 4602 dogs. Results show that loose patellae indicate that dogs are genetically more susceptible to develop PL because family members of the dogs with loose patellae showed more severe PL. In addition, the estimated breeding values for dogs with loose patellae indicate that breeding values of dogs with loose patellae were worse than breeding values obtained for dogs with a normal score. Given these results, it is advised to orthopaedic specialists to continue to score loose patellae as a separate class and to dog breeders to minimize the use of dogs in breeding with a genetically higher susceptibility for PL. PMID:26403830

  6. Locus minimization in breed prediction using artificial neural network approach.

    PubMed

    Iquebal, M A; Ansari, M S; Sarika; Dixit, S P; Verma, N K; Aggarwal, R A K; Jayakumar, S; Rai, A; Kumar, D

    2014-12-01

    Molecular markers, viz. microsatellites and single nucleotide polymorphisms, have revolutionized breed identification through the use of small samples of biological tissue or germplasm, such as blood, carcass samples, embryos, ova and semen, that show no evident phenotype. Classical tools of molecular data analysis for breed identification have limitations, such as the unavailability of referral breed data, causing increased cost of collection each time, compromised computational accuracy and complexity of the methodology used. We report here the successful use of an artificial neural network (ANN) in background to decrease the cost of genotyping by locus minimization. The webserver is freely accessible (http://nabg.iasri.res.in/bisgoat) to the research community. We demonstrate that the machine learning (ANN) approach for breed identification is capable of multifold advantages such as locus minimization, leading to a drastic reduction in cost, and web availability of reference breed data, alleviating the need for repeated genotyping each time one investigates the identity of an unknown breed. To develop this model web implementation based on ANN, we used 51,850 samples of allelic data of microsatellite-marker-based DNA fingerprinting on 25 loci covering 22 registered goat breeds of India for training. Minimizing loci to up to nine loci through the use of a multilayer perceptron model, we achieved 96.63% training accuracy. This server can be an indispensable tool for identification of existing breeds and new synthetic commercial breeds, leading to protection of intellectual property in case of sovereignty and bio-piracy disputes. This server can be widely used as a model for cost reduction by locus minimization for various other flora and fauna in terms of variety, breed and/or line identification, especially in conservation and improvement programs. PMID:25183434

  7. Habitat selection by breeding red-winged blackbirds

    USGS Publications Warehouse

    Albers, P.H.

    1978-01-01

    Habitat preferences of breeding Red-winged Blackbirds in an agricultural area were determined by comparing population density, landscape characteristics, and vegetational descriptions. Observations were made throughout the breeding season. Preferred breeding habitats of Red-wings, in order of preference, were wetlands, hayfields, old fields, and pastures. Males and females occupied old fields and wetlands first, then hayfields, and finally, pastures. Cutting of hayfields caused territorial abandonment by both sexes within 48 h. The apparent movement of displaced females from cut hayfields to uncut hayfields suggests that habitat fidelity of females is strong after the breeding effort has begun. Breeding Red-wings exhibited general preferences for trees, large amounts of habitat edge, erect old vegetation, and sturdy, tall, and dense vegetation. Vegetative forms and species, such as upland grasses, broad- and narrow-leafed monocots in wetlands, and forbs were important to the Red-wing at various times during the breeding season. Landscape and vegetational preferences of breeding adults were easier to observe early in the breeding season (March through May) than later. Vegetational growth and increases in the size of the breeding population probably make these preferences more difficult to detect. Territory size was poorly correlated with landscape and vegetational characteristics in uplands but strongly correlated with broad- and narrow-leafed mono cots and vegetative height in wetlands. Wetland territories were smaller than upland territories. Territories increased in size during the middle and late portions of the breedi g season. Habitat selection by the Red-winged Blackbird can best be studied by evaluating vegetative preferences throughout the breeding season.

  8. [Characteristics of pedigree cat breeding in the Netherlands: breeds, population increase and litter size].

    PubMed

    Gerrits, P O; Huisman, T; Knol, B W

    1999-03-01

    A survey of the Dutch Cat Fancy was carried out to determine reproductive, patterns of pedigree cats. The data of the present study were obtained by questioning the pedigree registers of the cat clubs participating in the foundation 'Overleg Platform van de Nederlandse Cat Fancy'. The Dutch Cat Fancy registers 34 different cat breeds. From 1992 up to 1996 a total of 25.985 litters were registered. Over this period the number of litters increased from 4989 to 5313. Litters from Longhair and Exotic Shorthair cats comprised the biggest group and accounted for 55% of the total number of litters. However, over this period, the number of Longhair and Exotic Shorthair litters decreased by 9%. Litters from British Shorthair, Birman, Maine Coon and Norwegian Forrest Cat increased in number as did litters from small breeds such as Ragdoll, Bengal and Sphynx. Litters from Abyssinian, Siamese, Oriental Shorthair cats remained relatively the same. The average litter size of the total cat population, based on pedigree certificates, was calculated at 3.3 kittens per litter. For different breeds litter size varied from 2.7 (Longhair and Exotic Shorthair) to 4.3 (Burmese and Maine Coon). Taking into account an average age of 14 years, the total Dutch pedigree cat population was estimated at 240,000 viz. about 10% of the total cat population. PMID:10084198

  9. Divorce in cooperatively breeding long-tailed tits: a consequence of inbreeding avoidance?

    PubMed

    Hatchwell, B J; Russell, A F; Ross, D J; Fowlie, M K

    2000-04-22

    The decision of whether to divorce a breeding partner between reproductive attempts can significantly affect individual fitness. In this paper, we report that 63% of surviving pairs of long-tailed tits Aegithalos caudatus divorced between years. We examine three likely explanations for the high divorce rate in this cooperative breeder. The 'better option' hypothesis predicts that divorce and re-pairing increases an individual's reproductive success. However, divorcees did not secure better partners or more helpers and there was no improvement in their reproductive success following divorce. The 'inbreeding avoidance' hypothesis predicts that females should disperse from their family group to avoid breeding with philopatric sons. The observed pattern of divorce was consistent with this hypothesis because, in contrast to the usual avian pattern, divorce was typical for successful pairs (81%) and less frequent in unsuccessful pairs (36-43%). The 'forced divorce' hypothesis predicts that divorce increases as the number of competitors increases. The pattern of divorce among failed breeders was consistent with this hypothesis, but it fails to explain the overall occurrence of divorce because divorcees rarely re-paired with their partners' closest competitors. We discuss long-tailed tits' unique association between divorce and reproductive success in the context of dispersal strategies for inbreeding avoidance. PMID:10819152

  10. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.).

    PubMed

    Kantar, Michael B; Sosa, Chrystian C; Khoury, Colin K; Castañeda-Álvarez, Nora P; Achicanoy, Harold A; Bernau, Vivian; Kane, Nolan C; Marek, Laura; Seiler, Gerald; Rieseberg, Loren H

    2015-01-01

    Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and niche occupancy in 36 taxa closely related to sunflower (Helianthus annuus L.). Taxa lacking comprehensive ex situ conservation were identified. The predicted distributions for 36 Helianthus taxa identified substantial range overlap, range asymmetry and niche conservatism. Specific taxa (e.g., Helianthus deblis Nutt., Helianthus anomalus Blake, and Helianthus divaricatus L.) were identified as targets for traits of interest, particularly for abiotic stress tolerance, and adaptation to extreme soil properties. The combination of techniques demonstrates the potential for publicly available ecogeographic and phylogenetic data to facilitate the identification of possible sources of abiotic stress traits for plant breeding programs. Much of the primary genepool (wild H. annuus) occurs in extreme environments indicating that introgression of targeted traits may be relatively straightforward. Sister taxa in Helianthus have greater range overlap than more distantly related taxa within the genus. This adds to a growing body of literature suggesting that in plants (unlike some animal groups), geographic isolation may not be necessary for speciation. PMID:26500675

  11. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.)

    PubMed Central

    Kantar, Michael B.; Sosa, Chrystian C.; Khoury, Colin K.; Castañeda-Álvarez, Nora P.; Achicanoy, Harold A.; Bernau, Vivian; Kane, Nolan C.; Marek, Laura; Seiler, Gerald; Rieseberg, Loren H.

    2015-01-01

    Crop wild relatives (CWR) are a rich source of genetic diversity for crop improvement. Combining ecogeographic and phylogenetic techniques can inform both conservation and breeding. Geographic occurrence, bioclimatic, and biophysical data were used to predict species distributions, range overlap and niche occupancy in 36 taxa closely related to sunflower (Helianthus annuus L.). Taxa lacking comprehensive ex situ conservation were identified. The predicted distributions for 36 Helianthus taxa identified substantial range overlap, range asymmetry and niche conservatism. Specific taxa (e.g., Helianthus deblis Nutt., Helianthus anomalus Blake, and Helianthus divaricatus L.) were identified as targets for traits of interest, particularly for abiotic stress tolerance, and adaptation to extreme soil properties. The combination of techniques demonstrates the potential for publicly available ecogeographic and phylogenetic data to facilitate the identification of possible sources of abiotic stress traits for plant breeding programs. Much of the primary genepool (wild H. annuus) occurs in extreme environments indicating that introgression of targeted traits may be relatively straightforward. Sister taxa in Helianthus have greater range overlap than more distantly related taxa within the genus. This adds to a growing body of literature suggesting that in plants (unlike some animal groups), geographic isolation may not be necessary for speciation. PMID:26500675

  12. Pathomorphological features of calcinosis circumscripta in a dog

    PubMed Central

    Lee, Eun-Mi; Kim, Ah-Young; Lee, Eun-Joo

    2016-01-01

    A 19-month-old male German shepherd dog was presented with a hindlimb footpad mass. The mass was excised and histopathology was performed. Grossly, the cut section of the mass had multiple well-circumscribed nodules with a chalky appearance. Histopathologically, basophilic-stained calcium deposits of various sizes were distributed from dermis to subcutis, surrounded by epithelioid cells, multinucleated giant cells, and reactive fibroblasts. Myxoid metaplasia, calcium deposits in hair follicles, and psammoma-like bodies were also found. These histopathologic observations will greatly help to understand the pathogenesis of calcinosis circumscripta. PMID:27051446

  13. [Pathomorphology of stachybotryotoxicosis in calves during the nursing period].

    PubMed

    Dzhurov, A; Aleksandrov, M; Belchev, L; Ignatov, G

    1984-01-01

    An enzootic of stachybotryotoxicosis was established on a dairy farm in 35-46-day-old calves due to the use of straw contaminated with Stachybotrys alternans. Studied were the epizootiology, the clinical picture, and chiefly the morphology of the disease. A characteristic clinical feature was the edema in the intermandibular space. Morphologically, there were numerous hemorrhages in the subcutaneous tissue, skeletal muscles, abomasal and intestinal mucosa, kidney cortex, and urinary bladder as well as ulcerous and erosive colitis, edematized mesenterial lymph nodes and occasionally catarrhal and necrotic stomatitis, icterus, and perirenal edema. Contrary to the gross lesion picture known there were no changes in the rumen, reticulum, and omasum which were not sufficiently developed during that period. Histologically, there were degenerative nephrosis, focal hemorrhagic glomerulonephritis (occasionally coupled with bacterial embolization and dystrophic calcification of the kidneys), granular degeneration of the liver and heart, hemorrhages and edema of the lungs, and edema, hyperemia, and thrombi in the brain. PMID:6542274

  14. [Clinical picture and pathomorphology of acute coenuriasis in sheep].

    PubMed

    Angelov, A K; Belchev, L

    1986-01-01

    Clinical and morphological investigations were carried out in the case of two enzootics of coenurosis in weaned lambs. The disease was established in two flocks of 180 and 160 animals, respectively. Outbreaks were recorded two weeks after they were put on premises where dogs untreated for worms had been kept. Instable gait and incoordinated movements of the head and limbs were observed along with circling movements of the body, loss of herd instinct, and lay ill for a long time. Morphologically, hyperemia was seen in the meninges, hemispheres, cerebellum, and the basal portions of the brain, with swelling of the tissue, numerous oncospheres, and purulent and necrotic foci. Histopathologically, there were in the acute stages great numbers of parasite passages with detritus mass, hemorrhages, purulent-and-necrotic meningoencephalitis, and higher counts of neutrophile and eosinophile granulocytes. Besides, in the subacute cases there were histiocytes and lymphoid and gigantic alien cells. Differential diagnosis should take into consideration listeriosis, cerebrocortical necrosis, estrosis monesiosis, and enterotoxemia. PMID:3765379

  15. Modeling Myocardial Infarction in Mice: Methodology, Monitoring, Pathomorphology

    PubMed Central

    Ovsepyan, A.A.; Panchenkov, D.N.; Prokhortchouk, E.B.; Telegin, G.B.; Zhigalova, N.A.; Golubev, E.P.; Sviridova, T.E.; Matskeplishvili, S.T.; Skryabin, K.G.; Buziashvili, U.I.

    2011-01-01

    Myocardial infarction is one of the most serious and widespread diseases in the world. In this work, a minimally invasive method for simulating myocardial infarction in mice is described in the Russian Federation for the very first time; the procedure is carried out by ligation of the coronary heart artery or by controlled electrocoagulation. As a part of the methodology, a series of anesthetic, microsurgical and revival protocols are designed, owing to which a decrease in the postoperational mortality from the initial 94.6 to 13.6% is achieved. ECG confirms the development of large-focal or surface myocardial infarction. Postmortal histological examination confirms the presence of necrosis foci in the heart muscles of 87.5% of animals. Altogether, the medical data allow us to conclude that an adequate mouse model for myocardial infarction was generated. A further study is focused on the standardization of the experimental procedure and the use of genetically modified mouse strains, with the purpose of finding the most efficient therapeutic approaches for this disease. PMID:22649679

  16. Pathomorphological features of calcinosis circumscripta in a dog.

    PubMed

    Lee, Eun-Mi; Kim, Ah-Young; Lee, Eun-Joo; Jeong, Kyu-Shik

    2016-03-01

    A 19-month-old male German shepherd dog was presented with a hindlimb footpad mass. The mass was excised and histopathology was performed. Grossly, the cut section of the mass had multiple well-circumscribed nodules with a chalky appearance. Histopathologically, basophilic-stained calcium deposits of various sizes were distributed from dermis to subcutis, surrounded by epithelioid cells, multinucleated giant cells, and reactive fibroblasts. Myxoid metaplasia, calcium deposits in hair follicles, and psammoma-like bodies were also found. These histopathologic observations will greatly help to understand the pathogenesis of calcinosis circumscripta. PMID:27051446

  17. [Polonium-210 acute and chronic pathomorphology and pathogenesis].

    PubMed

    Kvacheva, Yu E

    2015-01-01

    In the present review, the data on the pathology of acute and chronic polonium injuries available from the an open-access domestic and foreign literature are primarily systemized and analyzed. The historical background of the research is presented in brief. On the basis of clinical and experimental generalizations, the current concept regarding the pathogenesis of polonium intoxication has been developed. PMID:26856053

  18. Technique for Evaluating Multiple Probability Occurrences /TEMPO/

    NASA Technical Reports Server (NTRS)

    Mezzacappa, M. A.

    1970-01-01

    Technique is described for adjustment of engineering response information by broadening the application of statistical subjective stimuli theory. The study is specifically concerned with a mathematical evaluation of the expected probability of relative occurrence which can be identified by comparison rating techniques.

  19. A Sweet Tasting Demonstration of Random Occurrences.

    ERIC Educational Resources Information Center

    Christopher, Andrew N.; Marek, Pam

    2002-01-01

    Discusses a game in which students must guess the flavor of LifeSaver candy without the aid of sight and smell. Explains that this demonstration assists students to understand the phenomenon of random occurrences. Describes how the presentation is conducted as well as the outcomes of the demonstration. (CMK)

  20. [T-2 toxin: occurrence and detection].

    PubMed

    Dohnal, V; Jezková, A; Kuca, K; Jun, D

    2007-07-01

    The paper is focused on the occurrence and methods for the detection of T-2 toxin, one of the most toxic trichothecene Fusarium mycotoxin. Due to its physical-chemical properties and high toxicity, T-2 toxin is classified as a potential biological warfare agent. PMID:17969315

  1. Tectonic implications of Archean anorthosite occurrences

    NASA Technical Reports Server (NTRS)

    Phinney, W. C.; Morrison, D. A.; Maczuga, D. E.

    1988-01-01

    The occurrences of megacrystic anorthosite and basalt in a variety of geologic settings were reviewed and it was found that these rock types occur in a variety of tectonic settings. Anorthosites and megacrystic basalts are petrogenetically related and are found in oceanic volcanic crust, cratons, and shelf environments. Although megacrystic basalts are most common in Archean terranes, similar occurrences are observed in rocks of early Proterozoic age, and even in young terranes such as the Galapagos hotspot. Based on inferences from experimental petrology, all of the occurrences are apparently associated with similar parental melts that are relatively Fe-rich tholeiites. The megacrystic rocks exhibit a two- (or more)-stage development of plagioclase, with the megacrysts having relatively uniform composition produced under nearly isothermal and isochemical conditions over substantial periods of time. The anorthosites appear to have intruded various crustal levels from very deep to very shallow. The petrogenetic indicators, however, suggest that conditions of formation of the Precambrian examples were different from Phanerozoic occurrences.

  2. Genetic diversity, structure, and breed relationships in Iberian cattle.

    PubMed

    Martín-Burriel, I; Rodellar, C; Cañón, J; Cortés, O; Dunner, S; Landi, V; Martínez-Martínez, A; Gama, L T; Ginja, C; Penedo, M C T; Sanz, A; Zaragoza, P; Delgado, J V

    2011-04-01

    In Iberia there are 51 officially recognized cattle breeds of which 15 are found in Portugal and 38 in Spain. We present here a comprehensive analysis of the genetic diversity and structure of Iberian cattle. Forty of these breeds were genotyped with 19 highly polymorphic microsatellite markers. Asturiana de los Valles displayed the greatest allelic diversity and Mallorquina the least. Unbiased heterozygosity values ranged from 0.596 to 0.787. The network based on Reynolds distances was star-shaped with few pairs of interrelated breeds and a clear cluster of 4 breeds (Alistana/Arouquesa/Marinhoa/Mirandesa). The analysis of the genetic structure of Iberian cattle indicated that the most probable number of population clusters included in the study would be 36. Distance results were supported by the STRUCTURE software indicating a relatively recent origin or possible crossbreeding or both between pairs or small groups of breeds. Five clusters included 2 different breeds (Betizu/Pirenaica, Morucha/Avileña, Parda de Montaña/Bruna de los Pirineos, Barrosã/Cachena, and Toro de Lidia/Brava de Lide), 3 breeds (Berrenda en Negro, Negra Andaluza, and Mertolenga) were divided in 2 independent clusters each, and 2 breeds were considered admixed (Asturiana de los Valles and Berrenda en Colorado). Individual assignation to breeds was not possible in the 2 admixed breeds and the pair Parda de Montaña/Bruna de los Pirineos. The relationship between Iberian cattle reflects their geographical origin rather than their morphotypes. Exceptions to this geographic clustering are most probably a consequence of crossbreeding with foreign breeds. The relative genetic isolation within their geographical origin, the consequent genetic drift, the adaptation to specific environment and production systems, and the influence of African and European cattle have contributed to the current genetic status of Iberian cattle, which are grouped according to their geographical origin. The greater

  3. Captive Breeding Programs Based on Family Groups in Polyploid Sturgeons

    PubMed Central

    Boscari, Elisa; Pujolar, Jose Martin; Dupanloup, Isabelle; Corradin, Riccardo; Congiu, Leonardo

    2014-01-01

    In species with long life cycles and discontinuous availability of individuals to reproduction, implementing a long-term captive breeding program can be difficult or impossible. In such cases, managing diversity among familiar groups instead of individuals could become a suitable approach to avoid inbreeding and increase the possibility to accomplish a breeding scheme. This is the case of several sturgeon species including the Adriatic sturgeon, whose recovery depends on the management of a few captive stocks directly descended from the same group of wild parents. In the present study, relatedness among 445 potential breeders was inferred with a novel software for pedigree reconstruction in tetraploids (“BreedingSturgeons”). This information was used to plan a breeding scheme considering familiar groups as breeding units and identifying mating priorities. A two-step strategy is proposed: a short-term breeding program, relying on the 13 remaining F0 individuals of certain wild origin; and a long-term plan based on F1 families. Simulations to evaluate the loss of alleles in the F2 generation under different pairing strategies and assess the number of individuals to breed, costs and logistical aquaculture constraints were performed. The strategy proposed is transferable to the several other tetraploid sturgeon species on the brink of extinction. PMID:25356794

  4. Brain size-related breeding strategies in a seabird.

    PubMed

    Jaatinen, Kim; Öst, Markus

    2016-01-01

    The optimal compromise between decision speed and accuracy may depend on cognitive ability, associated with the degree of encephalization: larger brain size may select for accurate but slow decision-making, beneficial under challenging conditions but costly under benign ones. How this brain size-dependent selection pressure shapes avian breeding phenology and reproductive performance remains largely unexplored. We predicted that (1) large-brained individuals have a delayed breeding schedule due to thorough nest-site selection and/or prolonged resource acquisition, (2) good condition facilitates early breeding independent of relative brain size, and (3) large brain size accrues benefits mainly to individuals challenged by environmental or intrinsic constraints. To test these predictions, we examined how the relative head volume of female eiders (Somateria mollissima) of variable body condition correlated with their breeding schedule, hatching success and offspring quality. The results were consistent with our predictions. First, large head size was associated with a progressively later onset of breeding with increasing breeding dispersal distance. Second, increasing body condition advanced the timing of breeding, but this effect was significantly weaker in large-brained females. Third, larger head volume was associated with increased hatching success mainly among late breeders and those in poor body condition, and duckling body condition was positively related to maternal head volume, but only in poor-condition mothers. Our study is, to our knowledge, the first to demonstrate the presence of brain size-related differences in reproductive strategies within a single natural population. PMID:26456024

  5. Evidence of selection signatures that shape the Persian cat breed.

    PubMed

    Bertolini, Francesca; Gandolfi, Barbara; Kim, Eui Soo; Haase, Bianca; Lyons, Leslie A; Rothschild, Max F

    2016-04-01

    The Persian cat is mainly characterized by an extremely brachycephalic face as part of the standard body conformation. Despite the popularity, world-wide distribution, and economic importance of the Persian cat as a fancy breed, little is known about the genetics of their hallmark morphology, brachycephaly. Over 800 cats from different breeds including Persian, non-Persian breeds (Abyssinian, Cornish Rex, Bengal, La Perm, Norwegian Forest, Maine Coon, Manx, Oriental, and Siamese), and Persian-derived breeds (British Shorthair, Scottish Fold, Selkirk Rex) were genotyped with the Illumina 63 K feline DNA array. The experimental strategy was composed of three main steps: (i) the Persian dataset was screened for runs of homozygosity to find and select highly homozygous regions; (ii) selected Persian homozygous regions were evaluated for the difference of homozygosity between Persians and those considered non-Persian breeds, and, (iii) the Persian homozygous regions most divergent from the non-Persian breeds were investigated by haplotype analysis in the Persian-derived breeds. Four regions with high homozygosity (H > 0.7) were detected, each with an average length of 1 Mb. Three regions can be considered unique to the Persian breed, with a less conservative haplotype pattern in the Persian-derived breeds. Moreover, two genes, CHL1 and CNTN6 known to determine face shape modification in humans, reside in one of the identified regions and therefore are positional candidates for the brachycephalic face in Persians. In total, the homozygous regions contained several neuronal genes that could be involved in the Persian cat behavior and can provide new insights into cat domestication. PMID:26956354

  6. Radiographic liver size in Pekingese dogs versus other dog breeds.

    PubMed

    Choi, Jihye; Keh, Seoyeon; Kim, Hyunwook; Kim, Junyoung; Yoon, Junghee

    2013-01-01

    Differential diagnoses for canine liver disease are commonly based on radiographic estimates of liver size, however little has been published on breed variations. Aims of this study were to describe normal radiographic liver size in Pekingese dogs and to compare normal measurements for this breed with other dog breeds and Pekingese dogs with liver disease. Liver measurements were compared for clinically normal Pekingese (n = 61), normal non-Pekingese brachycephalic (n = 45), normal nonbrachycephalic (n = 71), and Pekingese breed dogs with liver disease (n = 22). For each dog, body weight, liver length, T11 vertebral length, thoracic depth, and thoracic width were measured on right lateral and ventrodorsal abdominal radiographs. Liver volume was calculated using a formula and ratios of liver length/T11 vertebral length and liver volume/body weight ratio were determined. Normal Pekingese dogs had a significantly smaller liver volume/body weight ratio (16.73 ± 5.67, P < 0.05) than normal non-Pekingese brachycephalic breed dogs (19.54 ± 5.03) and normal nonbrachycephalic breed dogs (18.72 ± 6.52). The liver length/T11 vertebral length ratio in normal Pekingese (4.64 ± 0.65) was significantly smaller than normal non-Pekingese brachycephalic breed dogs (5.16 ± 0.74) and normal nonbrachycephalic breed dogs (5.40 ± 0.74). Ratios of liver volume/body weight and liver length/T11 vertebral length in normal Pekingese were significantly different from Pekingese with liver diseases (P < 0.05). Findings supported our hypothesis that Pekingese dogs have a smaller normal radiographic liver size than other breeds. We recommend using 4.64× the length of the T11 vertebra as a radiographic criterion for normal liver length in Pekingese dogs. PMID:23094756

  7. New biotechnology enhances the application of cisgenesis in plant breeding

    PubMed Central

    Hou, Hongwei; Atlihan, Neslihan; Lu, Zhen-Xiang

    2014-01-01

    Cisgenesis is genetic modification to transfer beneficial alleles from crossable species into a recipient plant. The donor genes transferred by cisgenesis are the same as those used in traditional breeding. It can avoid linkage drag, enhance the use of existing gene alleles. This approach combines traditional breeding techniques with modern biotechnology and dramatically speeds up the breeding process. This allows plant genomes to be modified while remaining plants within the gene pool. Therefore, cisgenic plants should not be assessed as transgenics for environmental impacts. PMID:25157261

  8. Breeding and solitary wave behavior of dunes.

    PubMed

    Durán, O; Schwämmle, V; Herrmann, H

    2005-08-01

    Beautiful dune patterns can be found in deserts and along coasts due to the instability of a plain sheet of sand under the action of the wind. Barchan dunes are highly mobile aeolian dunes found in areas of low sand availability and unidirectional wind fields. Up to now modelization mainly focused on single dunes or dune patterns without regarding the mechanisms of dune interactions. We study the case when a small dune bumps into a bigger one. Recently Schwämmle and Herrmann [Nature (London) 426, 610 (2003)] and Katsuki [(e-print cond-mat 0403312)] have shown that under certain circumstances dunes can behave like solitary waves. This means that they can "cross" each other which has been questioned by many researchers before. In other cases we observe coalescence--i.e., both dunes merge into one--breeding--i.e., the creation of three baby dunes at the center and horns of a Barchan dune--or budding--i.e., the small dune, after "crossing" the big one, is unstable and splits into two new dunes. PMID:16196557

  9. Advances in table grape breeding in Japan

    PubMed Central

    Yamada, Masahiko; Sato, Akihiko

    2016-01-01

    In Japan, few grape cultivars related to Vitis vinifera existed 200 years ago, on account of Japan’s high rainfall. Many V. labruscana and vinifera cultivars were introduced to Japan in the 19th century. Labruscana was grown instead of vinifera, mainly because of severe disease problems and a high incidence of berry cracking. Grape breeding for table use started in the 20th century, with the goal of combining the berry quality of vinifera with the ease of cultivation of labruscana. By 1945, three strategies were used: 1) crossing among introduced diploid vinifera and vinifera-related cultivars of Japanese origin, 2) interspecific crossing in tetraploid cultivars, and 3) interspecific crossing in diploid cultivars, resulting in ‘Neo Muscat’, ‘Kyoho’, and ‘Muscat Bailey A’. Later, tetraploid interspecific crossing over generations developed many ‘Kyoho’-related cultivars, including ‘Pione’, many of which have large berries, intermediate flesh texture between the two species, a labruscan or neutral flavor, and moderate disease resistance. Interspecific diploid crossing over generations developed ‘Shine Muscat’ in 2006, with large berries, crispy flesh, a muscat flavor, no cracking, seedless fruit by gibberellin application, and moderate resistance to downy mildew and ripe rot. PMID:27069389

  10. Genome-assisted Breeding For Drought Resistance.

    PubMed

    Khan, Awais; Sovero, Valpuri; Gemenet, Dorcus

    2016-08-01

    Drought stress caused by unpredictable precipitation poses a major threat to food production worldwide, and its impact is only expected to increase with the further onset of climate change. Understanding the effect of drought stress on crops and plants' response is critical for developing improved varieties with stable high yield to fill a growing food gap from an increasing population depending on decreasing land and water resources. When a plant encounters drought stress, it may use multiple response types, depending on environmental conditions, drought stress intensity and duration, and the physiological stage of the plant. Drought stress responses can be divided into four broad types: drought escape, drought avoidance, drought tolerance, and drought recovery, each characterized by interacting mechanisms, which may together be referred to as drought resistance mechanisms. The complex nature of drought resistance requires a multi-pronged approach to breed new varieties with stable and enhanced yield under drought stress conditions. High throughput genomics and phenomics allow marker-assisted selection (MAS) and genomic selection (GS), which offer rapid and targeted improvement of populations and identification of parents for rapid genetic gains and improved drought-resistant varieties. Using these approaches together with appropriate genetic diversity, databases, analytical tools, and well-characterized drought stress scenarios, weather and soil data, new varieties with improved drought resistance corresponding to grower preferences can be introduced into target regions rapidly. PMID:27499682

  11. Breeding racehorses: what price good genes?

    PubMed

    Wilson, Alastair J; Rambaut, Andrew

    2008-04-23

    Horse racing is a multi-million pound industry, in which genetic information is increasingly used to optimize breeding programmes. To maximize the probability of producing a successful offspring, the owner of a mare should mate her with a high-quality stallion. However, stallions with big reputations command higher stud fees and paying these is only a sensible strategy if, (i) there is a genetic variation for success on the racecourse and (ii) stud fees are an honest signal of a stallion's genetic quality. Using data on thoroughbred racehorses, and lifetime earnings from prize money (LE) as a measure of success, we performed quantitative genetic analyses within an animal model framework to test these two conditions. Although LE is heritable (VA=0.299+/-0.108, Pr=0.002), there is no genetic variance for stud fee and the genetic correlation between traits is therefore zero. This result is supported by an absence of any relationship between stud fees for currently active stallions and the predicted LE for their (hypothetical) offspring. Thus, while there are good genes to be bought, a stallion's fees are not an honest signal of his genetic quality and are a poor predictor of a foal's prize winning potential. PMID:18089517

  12. Breeding of Biomphalaria tenagophila in mass scale.

    PubMed

    Rosa, Florence Mara; Marques, Daisymara P Almeida; Maciel, Engels; Couto, Josiane Maria; Negrão-Corrêa, Deborah A; Teles, Horácio M Santana; Santos, João Batista dos; Coelho, Paulo Marcos Zech

    2013-01-01

    An efficient method for breeding Biomphalaria tenagophila (Taim lineage/RS) was developed over a 5-year-period (2005-2010). Special facilities were provided which consisted of four cement tanks (9.4 x 0.6 x 0.22 m), with their bottom covered with a layer of sterilized red earth and calcium carbonate. Standard measures were adopted, as follows: each tank should contain an average of 3000 specimens, and would be provided with a daily ration of 35,000 mg complemented with lettuce. A green-house effect heating system was developed which constituted of movable dark canvas covers, which allowed the temperature to be controlled between 20 - 24 ºC. This system was essential, especially during the coldest months of the year. Approximately 27,000 specimens with a diameter of 12 mm or more were produced during a 14-month-period. The mortality rates of the newly-hatched and adult snails were 77% and 37%, respectively. The follow-up of the development system related to 310 specimens of B. tenagophila demonstrated that 70-day-old snails reached an average of 17.0 ± 0.9 mm diameter. The mortality rates and the development performance of B. tenagophila snails can be considered as highly satisfactory, when compared with other results in literature related to works carried out with different species of the genus Biomphalaria, under controlled laboratory conditions. PMID:23328724

  13. SED Alumni---breeding ground for scientists

    NASA Astrophysics Data System (ADS)

    Bederson, Benjamin

    2006-04-01

    In 1943 the US Army established the Special Engineering Detachment (SED), in which mostly drafted young soldiers possessing some scientific credentials (though usually quite minimal) were reassigned from other duties to the Manhattan Project to assist in various research and development aspects of nuclear weapons. The Los Alamos contingent, never more than a few hundred GIs, worked with more senior scientists and engineers, often assuming positions of real responsibility. An unintended consequence of this circumstance was the fact that being in the SEDs turned out to be a fortuitous breeding ground for future physicists, chemists, and engineers. SEDs benefited from their close contacts with established scientists, working with them side by side, attended lectures by luminaries, and gained invaluable experience that would help them establish academic and industrial careers later in life. I will discuss some of these individuals (I list only those of whom I am personally aware). These include Henry ``Heinz'' Barschall*, Richard Bellman*-RAND Corporation, Murray Peshkin-ANL, Peter Lax-Courant Institute, NYU, William Spindel*-NRC,NAS, Bernard Waldman- Notre Dame, Richard Davisson*-U of Washington, Arnold Kramish- RAND, UNESCO, Josef Hofmann- Acoustic Research Corp, Val Fitch- Princeton U. *deceased

  14. Advances in table grape breeding in Japan.

    PubMed

    Yamada, Masahiko; Sato, Akihiko

    2016-01-01

    In Japan, few grape cultivars related to Vitis vinifera existed 200 years ago, on account of Japan's high rainfall. Many V. labruscana and vinifera cultivars were introduced to Japan in the 19th century. Labruscana was grown instead of vinifera, mainly because of severe disease problems and a high incidence of berry cracking. Grape breeding for table use started in the 20th century, with the goal of combining the berry quality of vinifera with the ease of cultivation of labruscana. By 1945, three strategies were used: 1) crossing among introduced diploid vinifera and vinifera-related cultivars of Japanese origin, 2) interspecific crossing in tetraploid cultivars, and 3) interspecific crossing in diploid cultivars, resulting in 'Neo Muscat', 'Kyoho', and 'Muscat Bailey A'. Later, tetraploid interspecific crossing over generations developed many 'Kyoho'-related cultivars, including 'Pione', many of which have large berries, intermediate flesh texture between the two species, a labruscan or neutral flavor, and moderate disease resistance. Interspecific diploid crossing over generations developed 'Shine Muscat' in 2006, with large berries, crispy flesh, a muscat flavor, no cracking, seedless fruit by gibberellin application, and moderate resistance to downy mildew and ripe rot. PMID:27069389

  15. Breeding for nobility or for production? Cultures of dairy cattle breeding in the Netherlands, 1945-1995.

    PubMed

    Theunissen, Bert

    2012-06-01

    In the 1970s and 1980s Dutch farmers replaced their dual-purpose Friesian cows with Holsteins, a highly specialized American dairy breed. The changeover was related to a major turnabout in breeding practices that involved the adoption of quantitative genetics. Dutch commercial breeders had long resisted the quantitative approach to breeding that scientists had been recommending since World War II. After about 1970, however, they gave up their resistance: the art of breeding, it was said, finally became a science. In historical overviews this turnabout is seen as part of what is called the "modernization project" in Dutch agriculture that the government instigated after the war. Economic developments are assumed to have necessitated this project, and specialization of production is seen as a natural consequence. This essay argues that the idea that the art of breeding was turned into a science is to a certain extent misleading. Furthermore, it aims to show that economic pressures and government policies cannot adequately explain the turn toward Holsteins. A better understanding can be obtained by framing the Holsteinization process as the result of a changeover in breeding culture--that is, in the ensemble of shared convictions, beliefs, conventions, methods, practices, and the like that characterized practical cattle breeding and that involved scientific, technical, economic, aesthetic, normative, and commercial considerations. PMID:22908422

  16. Tidal triggering effect on earthquakes occurrence

    NASA Astrophysics Data System (ADS)

    Contadakis, M. E.; Arabelos, D.; Spatalas, S. D.

    2016-01-01

    In this review we present the investigation for the tidal triggering evidence on the earthquakes at various seismic areas of Greece. The result of our analysis using the HiCum method, indicate that the monthly variation of the frequencies of earthquake occurrence is in accordance with the period of the tidal lunar monthly (Mm) variations. The same happens with the corresponding diurnal and semi-diurnal variations of the frequencies of earthquake occurrence with the diurnal (K1), (O1) and semi-diurnal solar (S2) and semidiurnal lunar (M2) tidal variations. The confidence level of the Tidal-Earthquake frequency period compliance is very sensitive to the seismicity of the area and we call it Tidal - Earthquake frequency compliance parameter. We suggest that this parameter may be used in earthquake risk evaluation.

  17. Idaho National Laboratory Quarterly Occurrence Analysis

    SciTech Connect

    Mitchell, Lisbeth Ann

    2015-11-01

    This report is published quarterly by the Idaho National Laboratory (INL) Quality and Performance Management Organization. The Department of Energy (DOE) Occurrence Reporting and Processing System (ORPS), as prescribed in DOE Order 232.2, “Occurrence Reporting and Processing of Operations Information,” requires a quarterly analysis of events, both reportable and not reportable, for the previous 12 months. This report is the analysis of 85 reportable events (18 from the 4th Qtr FY-15 and 67 from the prior three reporting quarters), as well as 25 other issue reports (including events found to be not reportable and Significant Category A and B conditions) identified at INL during the past 12 months (8 from this quarter and 17 from the prior three quarters).

  18. Genetic characterization of four native Italian shepherd dog breeds and analysis of their relationship to cosmopolitan dog breeds using microsatellite markers.

    PubMed

    Bigi, D; Marelli, S P; Randi, E; Polli, M

    2015-12-01

    Very little research into genetic diversity of Italian native dog breeds has been carried out so far. In this study we aimed to estimate and compare the genetic diversity of four native Italian shepherd dog breeds: the Maremma, Bergamasco, Lupino del Gigante and Oropa shepherds. Therefore, some cosmopolitan dog breeds, which have been widely raised in Italy for a long time past, have also been considered to check possible influence of these dog populations on the Italian autochthonous breeds considered here. A total of 212 individuals, belonging to 10 different dog breeds, were sampled and genotyped using 18 autosomal microsatellite loci. We analyzed the genetic diversity of these breeds, within breed diversity, breed relationship and population structure. The 10 breeds considered in this study were clearly genetically differentiated from each other, regardless of current population sizes and the onset of separate breeding history. The level of genetic diversity explained 20% of the total genetic variation. The level of H E found here is in agreement with that found by other studies. The native Italian breeds showed generally higher genetic diversity compared with the long established, well-defined cosmopolitan dog breeds. As the Border Collie seems closer to the Italian breeds than the other cosmopolitan shepherd dogs considered here, a possible utilization of this breed to improve working performance in Italian traditional working shepherd dogs cannot be ignored. The data and information found here can be utilized in the organization of conservation programs planned to reduce inbreeding and to minimize loss of genetic variability. PMID:26245492

  19. Mycotoxins: occurrence, toxicology, and exposure assessment.

    PubMed

    Marin, S; Ramos, A J; Cano-Sancho, G; Sanchis, V

    2013-10-01

    Mycotoxins are abiotic hazards produced by certain fungi that can grow on a variety of crops. Consequently, their prevalence in plant raw materials may be relatively high. The concentration of mycotoxins in finished products is usually lower than in raw materials. In this review, occurrence and toxicology of the main mycotoxins are summarised. Furthermore, methodological approaches for exposure assessment are described. Existing exposure assessments, both through contamination and consumption data and biomarkers of exposure, for the main mycotoxins are also discussed. PMID:23907020

  20. Mine and mineral occurrences of Afghanistan

    USGS Publications Warehouse

    Orris, G.J.; Bliss, J.D.

    2002-01-01

    This inventory of more than 1000 mines and mineral occurrences in Afghanistan was compiled from published literature and the files of project members of the National Industrial Minerals project of the U.S. Geological Survey. The compiled data have been edited for consistency and most duplicates have been deleted. The data cover metals, industrial minerals, coal, and peat. Listings in the table represent several levels of information, including mines, mineral showings, deposits, and pegmatite fields.

  1. Antagonistic effect of helpers on breeding male and female survival in a cooperatively breeding bird

    PubMed Central

    Paquet, Matthieu; Doutrelant, Claire; Hatchwell, Ben J; Spottiswoode, Claire N; Covas, Rita

    2015-01-01

    1. Cooperatively breeding species are typically long lived and hence, according to theory, are expected to maximize their lifetime reproductive success through maximizing survival. Under these circumstances, the presence of helpers could be used to lighten the effort of current reproduction for parents to achieve higher survival. 2. In addition, individuals of different sexes and ages may follow different strategies, but whether male and female breeders and individuals of different ages benefit differently from the presence of helpers has often been overlooked. Moreover, only one study that investigated the relationship between parental survival and the presence of helpers used capture–mark–recapture analyses (CMR). These methods are important since they allow us to account for the non-detection of individuals that are alive in the population but not detected, and thus, the effects on survival and recapture probability to be disentangled. 3. Here, we used multi-event CMR methods to investigate whether the number of helpers was associated with an increase in survival probability for male and female breeders of different ages in the sociable weaver Philetairus socius. In this species, both sexes reduce their feeding rate in the presence of helpers. We therefore predicted that the presence of helpers should increase the breeders' survival in both sexes, especially early in life when individuals potentially have more future breeding opportunities. In addition, sociable weaver females reduce their investment in eggs in the presence of helpers, so we predicted a stronger effect of helpers on female than male survival. 4. As expected we found that females had a higher survival probability when breeding with more helpers. Unexpectedly, however, male survival probability decreased with increasing number of helpers. This antagonistic effect diminished as the breeders grew older. 5. These results illustrate the complexity of fitness costs and benefits underlying

  2. Antagonistic effect of helpers on breeding male and female survival in a cooperatively breeding bird.

    PubMed

    Paquet, Matthieu; Doutrelant, Claire; Hatchwell, Ben J; Spottiswoode, Claire N; Covas, Rita

    2015-09-01

    1. Cooperatively breeding species are typically long lived and hence, according to theory, are expected to maximize their lifetime reproductive success through maximizing survival. Under these circumstances, the presence of helpers could be used to lighten the effort of current reproduction for parents to achieve higher survival. 2. In addition, individuals of different sexes and ages may follow different strategies, but whether male and female breeders and individuals of different ages benefit differently from the presence of helpers has often been overlooked. Moreover, only one study that investigated the relationship between parental survival and the presence of helpers used capture-mark-recapture analyses (CMR). These methods are important since they allow us to account for the non-detection of individuals that are alive in the population but not detected, and thus, the effects on survival and recapture probability to be disentangled. 3. Here, we used multi-event CMR methods to investigate whether the number of helpers was associated with an increase in survival probability for male and female breeders of different ages in the sociable weaver Philetairus socius. In this species, both sexes reduce their feeding rate in the presence of helpers. We therefore predicted that the presence of helpers should increase the breeders' survival in both sexes, especially early in life when individuals potentially have more future breeding opportunities. In addition, sociable weaver females reduce their investment in eggs in the presence of helpers, so we predicted a stronger effect of helpers on female than male survival. 4. As expected we found that females had a higher survival probability when breeding with more helpers. Unexpectedly, however, male survival probability decreased with increasing number of helpers. This antagonistic effect diminished as the breeders grew older. 5. These results illustrate the complexity of fitness costs and benefits underlying cooperative

  3. Records of Northern Mockingbird, Mimus polyglottos, occurrences in North Dakota during the twentieth century

    USGS Publications Warehouse

    Igl, L.D.; Martin, R.E.

    2002-01-01

    The Northern Mockingbird (Mimus polyglottos) is a common bird in the southern United States that has been expanding its breeding range into the northern United States and southern Canada. During the twentieth century, there were 128 reports of Northern Mockingbird occurrences in North Dakota, including 106 reports during the breeding season (15 April to 31 August) and 22 during the nonbreeding season (1 September to 14 April). The species has been largely absent from North Dakota from January through mid-April. Prior to the 1930s, there was only one record (1916) of the Northern Mockingbird in the state. Observations of Northern Mockingbirds in North Dakota increased markedly between the 1930s and 1990s. On average, there were 0.3 reports of mockingbirds per year in 1931-1940, 0.6 in 1941-1950, 1.1 in 1951-1960, 1.6 in 1961-1970, 2.4 in 1971-1980, 2.3 in 1981-1990, and 4.5 in 1991-2000. The species has been observed in North Dakota nearly annually since 1958. At least six reports during the twentieth century included evidence of nesting (nests or dependent young). Based on mockingbird records during the twentieth century, we designate the current status of the Northern Mockingbird in North Dakota as a rare spring migrant, rare summer visitant, casual nester, and a casual fall and winter visitant.

  4. Records of northern mockingbird, Mimus polyglottos, occurrences in North Dakota during the Twentieth Century

    USGS Publications Warehouse

    Igl, L.D.; Martin, R.E.

    2002-01-01

    The Northern Mockingbird (Mimus polyglottos) is a common bird in the southern United States that has been expanding its breeding range into the northern United States and southern Canada. During the twentieth century, there were 128 reports of Northern Mockingbird occurrences in North Dakota, including 106 reports during the breeding season (15 April to 31 August) and 22 during the nonbreeding season (1 September to 14 April). The species has been largely absent from North Dakota from January through mid-April. Prior to the 1930s, there was only one record (1916) of the Northern Mockingbird in the state. Observations of Northern Mockingbirds in North Dakota increased markedly between the 1930s and 1990s. On average, there were 0.3 reports of mockingbirds per year in 1931-1940, 0.6 in 1941-1950, 1.1 in 1951-1960, 1.6 in 1961-1970, 2.4 in 1971-1980, 2.3 in 1981-1990, and 4.5 in 1991-2000. The species has been observed in North Dakota nearly annually since 1958. At least six reports during the twentieth century included evidence of nesting (nests or dependent young). Based on mockingbird records during the twentieth century, we designate the current status of the Northern Mockingbird in North Dakota as a rare spring migrant, rare summer visitant, casual nester, and a casual fall and winter visitant.

  5. Hierarchical models of animal abundance and occurrence

    USGS Publications Warehouse

    Royle, J. Andrew; Dorazio, R.M.

    2006-01-01

    Much of animal ecology is devoted to studies of abundance and occurrence of species, based on surveys of spatially referenced sample units. These surveys frequently yield sparse counts that are contaminated by imperfect detection, making direct inference about abundance or occurrence based on observational data infeasible. This article describes a flexible hierarchical modeling framework for estimation and inference about animal abundance and occurrence from survey data that are subject to imperfect detection. Within this framework, we specify models of abundance and detectability of animals at the level of the local populations defined by the sample units. Information at the level of the local population is aggregated by specifying models that describe variation in abundance and detection among sites. We describe likelihood-based and Bayesian methods for estimation and inference under the resulting hierarchical model. We provide two examples of the application of hierarchical models to animal survey data, the first based on removal counts of stream fish and the second based on avian quadrat counts. For both examples, we provide a Bayesian analysis of the models using the software WinBUGS.

  6. Meteotsunami occurrence frequency along the Mediterranean coasts

    NASA Astrophysics Data System (ADS)

    Masina, Marinella; Archetti, Renata; Lamberti, Alberto

    2016-04-01

    A number of research studies describe exceptional destructive meteotsunami events since long time whereas no systematic database is available of moderate events because sea level data were recorded with insufficient resolution. Sea level measurements recently collected with high sampling rate, one per minute or less, by tide gauges positioned along the Mediterranean coasts are examined, aiming to analyze the occurrence of oscillation events in the tsunami frequency range. Sea level data from operating tide stations inside the Mediterranean basin are made publicly available through the Intergovernmental Oceanographic Commission Sea Level Monitoring Facility web site (http://www.ioc-sealevelmonitoring.org/). After the implementation of a rigorous quality check procedure to the raw water level time series, Hilbert transform is applied to two hour high-pass filtered observations to identify tsunami-like oscillation events. Events of seismic origin are identified by consistency between earthquake occurrence and tsunami wave travel time from the earthquake epicenter to the specific tide gauge. Similar analyses are performed to exclude sea waves induced harbor seiches events. A list of probable meteotsunami episodes occurred in the Mediterranean region is so compiled and their occurrence frequency and intensity statistics are evaluated at the different tide gauge sites over the time period of high frequency water level data availability ranging from five to seven years. The effects of atmospheric conditions and seabed topography are discussed. Detection and characterization of meteotsunamis, both of exceptional character and of weak intensity, represent an essential step toward improved assessments of coastal flooding risk along the Mediterranean coasts.

  7. Morphological and functional changes of stallion spermatozoa after cryopreservation during breeding and non-breeding season.

    PubMed

    Blottner, S; Warnke, C; Tuchscherer, A; Heinen, V; Torner, H

    2001-01-31

    The study compared quality and freezability of stallion semen during breeding and non-breeding seasons. Ejaculates were collected twice per week from four stallions during May (n = 24) and December (n = 24). The semen was mixed with skim milk extender, centrifuged and resuspended in fresh extender. Aliquots of this sperm suspension were separated from extender and diluted in TALP medium for sperm evaluation or with cryoextender (type "Gent" or a combination of Triladyl and skim milk). Samples of 0.5ml were cryopreserved in straws using a programmed freezer. Parameters of sperm quality were evaluated before and after freezing/thawing. These included percentages of motile spermatozoa and of morphological intact sperm. Typical injuries were demonstrated by scanning electron microscopy (S.E.M.). The acrosomal status was visualised using FITC-conjugated peanut agglutinin, and the acrosome reaction was induced by calcium ionophore A 23187. The chromatin stability was estimated by acridine orange test. In winter, the average percentages of motile and morphologically normal sperm (67 and 74.3%, respectively) were higher than during the breeding season in May (59 and 65.9%; P < 0.05). After freezing/thawing the proportions of vital and intact sperm decreased significantly. The number of motile sperm declined to 15 and 18% in May and December (range 5-40%), and of morphologically intact sperm to 51% in both seasons. Results of S.E.M. showed typical membrane ruptures in the acrosomal region and some sperm with abnormal necks. The proportion of frozen sperm with spontaneous acrosome reaction was higher during winter (86.5 versus 77.0%), suggesting a higher degree of membrane reactivity. Percentages of spermatozoa with denaturated chromatin were minimal and showed minimal differences between fresh and frozen state, stallions or seasons. An additional decondensation treatment with papain and DTE revealed a slightly enhanced number of spermatozoa with denaturable DNA after

  8. Breed-Predispositions to Cancer in Pedigree Dogs

    PubMed Central

    Dobson, Jane M.

    2013-01-01

    Cancer is a common problem in dogs and although all breeds of dog and crossbred dogs may be affected, it is notable that some breeds of pedigree dogs appear to be at increased risk of certain types of cancer suggesting underlying genetic predisposition to cancer susceptibility. Although the aetiology of most cancers is likely to be multifactorial, the limited genetic diversity seen in purebred dogs facilitates genetic linkage or association studies on relatively small populations as compared to humans, and by using newly developed resources, genome-wide association studies in dog breeds are proving to be a powerful tool for unravelling complex disorders. This paper will review the literature on canine breed susceptibility to histiocytic sarcoma, osteosarcoma, haemangiosarcoma, mast cell tumours, lymphoma, melanoma, and mammary tumours including the recent advances in knowledge through molecular genetic, cytogenetic, and genome wide association studies. PMID:23738139

  9. Strawberry Genomics: Botanical History, Cultivation, Traditional Breeding, and New Technologies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter presents an introduction to strawberry (Fragaria L) genomics. Botanical history, nomenclature, cultivation, traditional and mutational breeding, and new technologies are discussed. The taxonomic classification of the broad range of polyploidy species of Fragaria is given and their orig...

  10. Breed-predispositions to cancer in pedigree dogs.

    PubMed

    Dobson, Jane M

    2013-01-01

    Cancer is a common problem in dogs and although all breeds of dog and crossbred dogs may be affected, it is notable that some breeds of pedigree dogs appear to be at increased risk of certain types of cancer suggesting underlying genetic predisposition to cancer susceptibility. Although the aetiology of most cancers is likely to be multifactorial, the limited genetic diversity seen in purebred dogs facilitates genetic linkage or association studies on relatively small populations as compared to humans, and by using newly developed resources, genome-wide association studies in dog breeds are proving to be a powerful tool for unravelling complex disorders. This paper will review the literature on canine breed susceptibility to histiocytic sarcoma, osteosarcoma, haemangiosarcoma, mast cell tumours, lymphoma, melanoma, and mammary tumours including the recent advances in knowledge through molecular genetic, cytogenetic, and genome wide association studies. PMID:23738139

  11. Clonal forestry, heterosis and advanced-generation breeding

    SciTech Connect

    Tuskan, G.A.

    1997-08-01

    This report discusses the clonal planting stock offers many advantages to the forest products industry. Advanced-generation breeding strategies should be designed to maximize within-family variance and at the same time allow the capture of heterosis. Certainly there may be a conflict in the choice of breeding strategy based on the trait of interest. It may be that the majority of the traits express heterosis due to overdominance. Alternatively, disease resistance is expressed as the lack of a specific metabolite or infection court then the homozygous recessive genotype may be the most desirable. Nonetheless, as the forest products industry begins to utilize the economic advantages of clonal forestry, breeding strategies will have to be optimized for these commercial plant materials. Here, molecular markers can be used to characterize the nature of heterosis and therefore define the appropriate breeding strategy.

  12. Polymorphisms of Chicken TLR3 and 7 in Different Breeds

    PubMed Central

    Ruan, Wenke; An, Jian; Wu, Yanhua

    2015-01-01

    Toll-like receptors (TLRs) mediate immune responses via the recognition of pathogen-associated molecular patterns (PAMPs), thus playing important roles in host defense. Among the chicken (Ch) TLR family, ChTLR3 and 7 have been shown to recognize viral RNA. In our earlier studies, we have reported polymorphisms of TLR1, 2, 4, 5, 15 and 21. In the present study, we amplified TLR3 and 7 genes from different chicken breeds and analyzed their sequences. We identified 7 amino acid polymorphism sites in ChTLR3 with 6 outer part sites and 1 inner part site, and 4 amino acid polymorphism sites in ChTLR7 with 3 outer part sites and 1 inner part site. These results demonstrate that ChTLR genes are polymorphic among different chicken breeds, suggesting a varied resistance across numerous chicken breeds. This information might help improve chicken health by breeding and vaccination. PMID:25781886

  13. Captive breeding of pangolins: current status, problems and future prospects

    PubMed Central

    Hua, Liushuai; Gong, Shiping; Wang, Fumin; Li, Weiye; Ge, Yan; Li, Xiaonan; Hou, Fanghui

    2015-01-01

    Abstract Pangolins are unique placental mammals with eight species existing in the world, which have adapted to a highly specialized diet of ants and termites, and are of significance in the control of forest termite disaster. Besides their ecological value, pangolins are extremely important economic animals with the value as medicine and food. At present, illegal hunting and habitat destruction have drastically decreased the wild population of pangolins, pushing them to the edge of extinction. Captive breeding is an important way to protect these species, but because of pangolin’s specialized behaviors and high dependence on natural ecosystem, there still exist many technical barriers to successful captive breeding programs. In this paper, based on the literatures and our practical experience, we reviewed the status and existing problems in captive breeding of pangolins, including four aspects, the naturalistic habitat, dietary husbandry, reproduction and disease control. Some recommendations are presented for effective captive breeding and protection of pangolins. PMID:26155072

  14. Characterisation of camel breeding practices in the Ansongo Region, Mali.

    PubMed

    Traoré, Bakary; Moula, Nassim; Toure, Abdoulaye; Ouologuem, Bara; Leroy, Pascal; Antoine-Moussiaux, Nicolas

    2014-10-01

    Despite its importance in Mali's economy, camel breeding in the country remains poorly documented, impeding effective policy-making in this regard. This study consisted in a 3-month survey and aimed at characterising camel breeding systems in Ansongo, in the region of Gao, Mali. It highlights the diversity of strategies adopted by breeders and their evolutions. Supplementary feeding and veterinary care were seldom practised. In zones close to the Niger River, cattle were substituted to camels. Transhumance routes also are modified but mobility keeps its vital role in the breeding system. Important differences within the study region in the classification of camel breeds have been reported that will influence the implementation of a collective action for animal genetic improvement. The improvement goals should take the actual management, including mobility and the mixed nature of the herds into account. PMID:25063387

  15. PRESENT STATUS OF CHARGE-BREEDING IN KEKCB AT TRIAC

    SciTech Connect

    Oyaizu, M.; Jeong, S. C.; Imai, N.; Fuchi, Y.; Hirayama, Y.; Ishiyama, H.; Miyatake, H.; Okada, M.; Watanabe, Y. X.; Ichikawa, S.; Kabumoto, H.; Matsuda, M.; Osa, A.; Otokawa, Y.

    2009-05-04

    We report a recent experiment about the measurement of wall distribution of ions externally injected for charge-breeding in an electron cyclotron resonance (ECR) ion source. The ions, radioactive and singly charged {sup 111}In, were injected into the ECR ion source (ECRIS) for breeding their charge states at the Tokai Radioactive Ion Accelerator Complex (TRIAC). The residual radioactivity on the wall of the ECR plasma chamber of the source was measured, giving a two-dimensional distribution of the ions failed to be re-extracted during charge breeding. The distribution was decomposed, according to azimuthal symmetry, into three components, asymmetric, 120-degree symmetric, and isotropic ones, whose origins were qualitatively discussed for clarifying ion-losses in the course of charge breeding in ECRIS.

  16. Captive breeding of pangolins: current status, problems and future prospects.

    PubMed

    Hua, Liushuai; Gong, Shiping; Wang, Fumin; Li, Weiye; Ge, Yan; Li, Xiaonan; Hou, Fanghui

    2015-01-01

    Pangolins are unique placental mammals with eight species existing in the world, which have adapted to a highly specialized diet of ants and termites, and are of significance in the control of forest termite disaster. Besides their ecological value, pangolins are extremely important economic animals with the value as medicine and food. At present, illegal hunting and habitat destruction have drastically decreased the wild population of pangolins, pushing them to the edge of extinction. Captive breeding is an important way to protect these species, but because of pangolin's specialized behaviors and high dependence on natural ecosystem, there still exist many technical barriers to successful captive breeding programs. In this paper, based on the literatures and our practical experience, we reviewed the status and existing problems in captive breeding of pangolins, including four aspects, the naturalistic habitat, dietary husbandry, reproduction and disease control. Some recommendations are presented for effective captive breeding and protection of pangolins. PMID:26155072

  17. Feline dystocia: prevalence, and association with cranial conformation and breed.

    PubMed

    Gunn-Moore, D A; Thrusfield, M V

    1995-04-01

    The litter prevalence of feline dystocia was investigated using a questionnaire survey of cat breeders. Information was obtained on 2928 litters, from 735 queens. Dystocia was reported to have occurred in 5.8 per cent of litters. The level of dystocia in individual breeds ranged from 0.4 per cent of litters born in a large colony of cats of mixed breeding, to 18.2 per cent of litters in the Devon rex. Pedigree litters were at significantly higher risk than litters of cats of mixed breeding (odds ratio: 22.6). Relatively high levels of dystocia were identified in Siamese-type, Persian and Devon rex litters, whereas cats of mixed breeding showed a relatively low litter prevalence. Dolicocephalic and brachycephalic types were found to have significantly higher levels of dystocia than mesocephalic cats. PMID:7610538

  18. Competition, breeding success and ageing rates in female meerkats.

    PubMed

    Sharp, S P; Clutton-Brock, T H

    2011-08-01

    Competition between females is particularly intense in cooperatively breeding mammals, where one female monopolises reproduction in each group. Chronic competition often affects stress and may therefore have long-term consequences for fitness, but no studies have yet investigated whether intrasexual competition has effects of this kind and, in particular, whether it affects rates of reproductive senescence. Here, we use long-term data from a wild population of meerkats to test whether reproductive success and senescence in dominant females are affected by the degree of intrasexual competition experienced prior to dominance acquisition. Females that experienced greater competition had lower breeding success and higher rates of reproductive senescence. Furthermore, females that were evicted from the group more frequently as subordinates had lower breeding success when dominant. We conclude that the intense intrasexual competition between females in cooperatively breeding groups may carry fitness costs over a longer period than is usually recognised. PMID:21599775

  19. Breeding nursery tissue collection for possible genomic analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phenotyping is considered a major bottleneck in breeding programs. With new genomic technologies, high throughput genotype schemes are constantly being developed. However, every genomic technology requires phenotypic data to inform prediction models generated from the technology. Forage breeders con...

  20. Occurrences and Effects of Drought across Africa

    NASA Astrophysics Data System (ADS)

    Mwangi, M. N.

    2009-12-01

    Drought is a common occurrence in Africa and its effects vary temporally and spatially across the continent. The objective of this paper is to synthesize available information on droughts in Africa in order to discern emerging trends vis-à-vis spatiotemporal occurrences, impacts and adaptation. Drought forcings in the Sahelian region and southern Africa are predominately related to the passage of mid-latitude air masses while in locations near the equator is strongly linked to the position of ITCZ, except perhaps in the deserts where albedo may predominate. The review shows that drought occurrences have increased both temporally and spatially; its effects on the society vary across scales, and are influenced by political, economic, social, cultural, and ecological factors. The drought occurrence and its impacts varied spatially and temporally. The effect of drought also varied with socioeconomic sector; agriculture and pastoralism were the widely reported. The greater horn of Africa, specifically Kenya, has the most continuous record of droughts. The synthesis also reveals that a suite of drought adaptation strategies exists at the local scale; in contrasts, at the aggregate scale, coping strategies are scarce. Drought management tailored for specific livelihood system or societies are non-existent. The study found that occurrence of drought alongside issues related to the multiscale political economy affect the viability of most adaptation strategies used by societies across Africa. Drought management has been silent on the social, political, and economic dimensions that reasonably aggravate the vulnerability of lives and livelihood systems to this climatic hazard. The effect of drought and social pressures is relational and simultaneous to such a degree that differential vulnerability among communities across Africa is to be expected. Although scenarios about rainfall and drought vis-à-vis Africa are largely contested there is a general indication that most

  1. Integrating genomic selection into dairy cattle breeding programmes: a review.

    PubMed

    Bouquet, A; Juga, J

    2013-05-01

    Extensive genetic progress has been achieved in dairy cattle populations on many traits of economic importance because of efficient breeding programmes. Success of these programmes has relied on progeny testing of the best young males to accurately assess their genetic merit and hence their potential for breeding. Over the last few years, the integration of dense genomic information into statistical tools used to make selection decisions, commonly referred to as genomic selection, has enabled gains in predicting accuracy of breeding values for young animals without own performance. The possibility to select animals at an early stage allows defining new breeding strategies aimed at boosting genetic progress while reducing costs. The first objective of this article was to review methods used to model and optimize breeding schemes integrating genomic selection and to discuss their relative advantages and limitations. The second objective was to summarize the main results and perspectives on the use of genomic selection in practical breeding schemes, on the basis of the example of dairy cattle populations. Two main designs of breeding programmes integrating genomic selection were studied in dairy cattle. Genomic selection can be used either for pre-selecting males to be progeny tested or for selecting males to be used as active sires in the population. The first option produces moderate genetic gains without changing the structure of breeding programmes. The second option leads to large genetic gains, up to double those of conventional schemes because of a major reduction in the mean generation interval, but it requires greater changes in breeding programme structure. The literature suggests that genomic selection becomes more attractive when it is coupled with embryo transfer technologies to further increase selection intensity on the dam-to-sire pathway. The use of genomic information also offers new opportunities to improve preservation of genetic variation. However

  2. Breeding-ground habitat conditions and the survival of mallards

    USGS Publications Warehouse

    Nichols, J.D.; Pospahala, R.S.; Hines, J.E.

    1982-01-01

    The relationship between habitat conditions in prairie breeding areas of North America and mallard (Anas platyrhynchos) survival rates was investigated. Annual survival-rate estimates for mallards generally were higher during years of high May pond numbers and low mallards-per-pond ratios than during years of low pond numbers and high ratios. This tendency was most pronounced among males. These results suggest that mallard survival probabilities may be affected by breeding-ground habitat conditions.

  3. Observations on mosquito breeding in wells and its control.

    PubMed

    Rajnikant; Bhatt, R M; Gupta, D K; Sharma, R C; Srivastava, H C; Gautam, A S

    1993-12-01

    Studies on mosquito breeding in wells revealed the dominance of An. stephensi among the malaria vectors, whereas Cx. quinquefasciatus was most abundant in disused wells and was present in wells of all depths. None of the anopheline species was encountered when well depth up to water level exceeded 12 m. Larval breeding was effectively controlled through the introduction of larvivorous fish Poecilia reticulata and expanded polystyrene (EPS) beads in comparison to untreated control wells. PMID:8034110

  4. A method for trapping breeding adult American Oystercatchers

    USGS Publications Warehouse

    McGowan, C.P.; Simons, T.R.

    2005-01-01

    We present an efficient and effective method for trapping adult, breeding American Oystercatchers (Haematopus palliatus) that minimizes disturbance to nesting birds and the risk of trapping injuries. We used a remote controlled mechanical decoy to lure territorial adults to a leg-hold noose-mat trap. We trapped 25 birds over two seasons and were successful on 54% of our trapping attempts in 2003. We only trapped birds before the breeding season or between nesting attempts to reduce nest-site disturbance.

  5. Helium-3 blankets for tritium breeding in fusion reactors

    NASA Technical Reports Server (NTRS)

    Steiner, Don; Embrechts, Mark; Varsamis, Georgios; Vesey, Roger; Gierszewski, Paul

    1988-01-01

    It is concluded that He-3 blankets offers considerable promise for tritium breeding in fusion reactors: good breeding potential, low operational risk, and attractive safety features. The availability of He-3 resources is the key issue for this concept. There is sufficient He-3 from decay of military stockpiles to meet the International Thermonuclear Experimental Reactor needs. Extraterrestrial sources of He-3 would be required for a fusion power economy.

  6. Causes of mortality in breeding rabbits.

    PubMed

    Rosell, J M; de la Fuente, L F

    2016-05-01

    In this study we determined mortality in breeding rabbits on 505 commercial farms in Spain during 2006-2014. We obtained our information by carrying out 3278 visits to 490 doe farms (127 also with males), and 877 visits to farms with males, including 132 visits to 15 artificial insemination (AI) centres. The median size of the farms was 769 does (minimum to maximum: 80-9000 does) and 44 males (minimum to maximum: 10-800 males). AI was used on 85% of the 490 doe farms. Females were serviced at 11 days postpartum on 75% of the farms. The mean Monthly Mortality Risk (MMR%) and 95% Binomial confidence interval (CI) in does were 2.82 (2.71-2.93%), and 1.87 (1.41-2.33%) in bucks, over a population of 2,641,709 females and 90,316 males at risk, in the course of the 9-year study; during the 42-day cycle, MMR% was 3.78 (3.67-3.89%). There were 9547 cohorts of females; 41.5% of the does were pregnant and lactating simultaneously, 28.1% only lactating, 17.4% only pregnant and 13% empty and not lactating. The MMR% of does during the last week of pregnancy was 7.05 (6.63-7.47%) and 4.26 (3.90-4.62%) during the 1st week of lactation. Our diagnoses were based on the macroscopic post-mortem examinations performed by a veterinarian on 2065 female rabbits found dead and 368 moribund-euthanized does. In the total 2433 on-farm necropsies on does and 55 males, we found alterations of the respiratory tract compatible with death in 0.70 (0.64-0.76%) MMR% in does, 0.88 (0.56-1.20%) in bucks; and digestive tract in 0.31 (0.27-0.35%) enteritis-diarrhoea, 0.11 (0.09-0.13%) mucoid enteropathy in does and 0.34 (0.14-0.54%) and 0.07 (0-0.16%) in males, respectively. Other primary causes of death were septicaemia, MMR% 0.23 (0.20-0.26%) in does, and 0.10 (0-0.22%) in males, viral haemorrhagic disease 0.22 (0.19-0.25%) in does, and 0.17 (0.03-0.31%) in bucks, metritis, pyometra, or both, 0.21 (0.19-0.25%), and uterine torsion, 0.20 (0.18-0.22%); 1.2 (1.01-1.39%) in the last week of pregnancy. The

  7. Nest ectoparasites increase physiological stress in breeding birds: an experiment

    NASA Astrophysics Data System (ADS)

    Martínez-de La Puente, Josué; Merino, Santiago; Tomás, Gustavo; Moreno, Juan; Morales, Judith; Lobato, Elisa; Martínez, Javier

    2011-02-01

    Parasites are undoubtedly a biotic factor that produces stress. Heat shock proteins (HSPs) are important molecules buffering cellular damage under adverse conditions. During the breeding season, blue tit Cyanistes caeruleus (L.) adults are affected by blood parasites, nest-dwelling parasites and biting flies, potentially affecting their HSP-mediated responses. Here, we treated females with primaquine to reduce blood parasites and fumigated nests with permethrin to reduce nest-dwelling parasites to test whether these treatments affect HSP60 level during the breeding season. Medicated females, but not controls, had a significant reduction of the intensity of infection by Haemoproteus spp. blood parasites. However, final intensity of infection did not differ significantly between groups, and we did not find an effect of medication on change in HSP60 level. Fumigation reduced the abundance of nest-dwelling parasites (mites, fleas and blowfly larvae) and engorged biting midges in nests. Females breeding in non-fumigated nests increased HSP60 levels during the season more than those breeding in fumigated nests. Furthermore, the change in HSP60 level was positively correlated with the abundance of biting midges. These results show how infections by nest ectoparasites during the breeding period can increase the level of HSPs and suggest that biting midges impose physiological costs on breeding female blue tits. Although plausible, the alternative that biting midges prefer to feed on more stressed birds is poorly supported by previous studies.

  8. Population size of snowy plovers breeding in North America

    USGS Publications Warehouse

    Thomas, Susan M.; Lyons, James E.; Andres, Brad A.; T-Smith, Elise Elliot; Palacios, Eduardo; Cavitt, John F.; Royle, J. Andrew; Fellows, Suzanne D.; Maty, Kendra; Howe, William H.; Mellink, Eric; Melvin, Stefani; Zimmerman, Tara

    2012-01-01

    Snowy Plovers (Charadrius nivosus) may be one of the rarest shorebirds in North America yet a comprehensive assessment of their abundance and distribution has not been completed. During 2007 and 2008, 557 discrete wetlands were surveyed and nine additional large wetland complexes sampled in México and the USA. From these surveys, a population of 23,555 (95% CI = 17,299 – 29,859) breeding Snowy Plovers was estimated. Combining the estimate with information from areas not surveyed, the total North American population was assessed at 25,869 (95% CI = 18,917 – 32,173). Approximately 42% of all breeding Snowy Plovers in North America resided at two sites (Great Salt Lake, Utah, and Salt Plains National Wildlife Refuge, Oklahoma), and 33% of all these were on wetlands in the Great Basin (including Great Salt Lake). Also, coastal habitats in central and southern Texas supported large numbers of breeding plovers. New breeding sites were discovered in interior deserts and highlands and along the Pacific coast of México; approximately 9% of the North American breeding population occurred in México. Because of uncertainties about effects of climate change and current stresses to breeding habitats, the species should be a management and conservation priority. Periodic monitoring should be undertaken at important sites to ensure high quality habitat is available to support the Snowy Plover population.

  9. Root phenotyping: from component trait in the lab to breeding.

    PubMed

    Kuijken, René C P; van Eeuwijk, Fred A; Marcelis, Leo F M; Bouwmeester, Harro J

    2015-09-01

    In the last decade cheaper and faster sequencing methods have resulted in an enormous increase in genomic data. High throughput genotyping, genotyping by sequencing and genomic breeding are becoming a standard in plant breeding. As a result, the collection of phenotypic data is increasingly becoming a limiting factor in plant breeding. Genetic studies on root traits are being hampered by the complexity of these traits and the inaccessibility of the rhizosphere. With an increasing interest in phenotyping, breeders and scientists try to overcome these limitations, resulting in impressive developments in automated phenotyping platforms. Recently, many such platforms have been thoroughly described, yet their efficiency to increase genetic gain often remains undiscussed. This efficiency depends on the heritability of the phenotyped traits as well as the correlation of these traits with agronomically relevant breeding targets. This review provides an overview of the latest developments in root phenotyping and describes the environmental and genetic factors influencing root phenotype and heritability. It also intends to give direction to future phenotyping and breeding strategies for optimizing root system functioning. A quantitative framework to determine the efficiency of phenotyping platforms for genetic gain is described. By increasing heritability, managing effects caused by interactions between genotype and environment and by quantifying the genetic relation between traits phenotyped in platforms and ultimate breeding targets, phenotyping platforms can be utilized to their maximum potential. PMID:26071534

  10. Genome-Wide Specific Selection in Three Domestic Sheep Breeds

    PubMed Central

    Cao, Jiaxve; Wu, Mingming; Ma, Xiaomeng; Liu, Zhen; Liu, Ruizao; Zhao, Fuping; Wei, Caihong; Du, Lixin

    2015-01-01

    Background Commercial sheep raised for mutton grow faster than traditional Chinese sheep breeds. Here, we aimed to evaluate genetic selection among three different types of sheep breed: two well-known commercial mutton breeds and one indigenous Chinese breed. Results We first combined locus-specific branch lengths and di statistical methods to detect candidate regions targeted by selection in the three different populations. The results showed that the genetic distances reached at least medium divergence for each pairwise combination. We found these two methods were highly correlated, and identified many growth-related candidate genes undergoing artificial selection. For production traits, APOBR and FTO are associated with body mass index. For meat traits, ALDOA, STK32B and FAM190A are related to marbling. For reproduction traits, CCNB2 and SLC8A3 affect oocyte development. We also found two well-known genes, GHR (which affects meat production and quality) and EDAR (associated with hair thickness) were associated with German mutton merino sheep. Furthermore, four genes (POL, RPL7, MSL1 and SHISA9) were associated with pre-weaning gain in our previous genome-wide association study. Conclusions Our results indicated that combine locus-specific branch lengths and di statistical approaches can reduce the searching ranges for specific selection. And we got many credible candidate genes which not only confirm the results of previous reports, but also provide a suite of novel candidate genes in defined breeds to guide hybridization breeding. PMID:26083354

  11. Genetic diversity in Spanish donkey breeds using microsatellite DNA markers

    PubMed Central

    Aranguren-Méndez, José; Jordana, Jordi; Gomez, Mariano

    2001-01-01

    Genetic diversity at 13 equine microsatellite loci was compared in five endangered Spanish donkey breeds: Andaluza, Catalana, Mallorquina, Encartaciones and Zamorano-Leonesa. All of the equine microsatellites used in this study were amplified and were polymorphic in the domestic donkey breeds with the exception of HMS1, which was monomorphic, and ASB2, which failed to amplify. Allele number, frequency distributions and mean heterozygosities were very similar among the Spanish donkey breeds. The unbiased expected heterozygosity (HE) over all the populations varied between 0.637 and 0.684 in this study. The low GST value showed that only 3.6% of the diversity was between breeds (P < 0.01). Significant deviations from Hardy-Weinberg equilibrium were shown for a number of locus-population combinations, except HMS5 that showed agreement in all analysed populations. The cumulative exclusion probability (PE) was 0.999 in each breed, suggesting that the loci would be suitable for donkey parentage testing. The constructed dendrogram from the DA distance matrix showed little differentiation between Spanish breeds, but great differentiation between them and the Moroccan ass and also with the horse, used as an outgroup. These results confirm the potential use of equine microsatellite loci as a tool for genetic studies in domestic donkey populations, which could also be useful for conservation plans. PMID:11559485

  12. Charge breeding simulations for radioactive ion beam production

    SciTech Connect

    Variale, V.; Raino, A. C.; Clauser, T.

    2012-02-15

    The charge breeding technique is used for radioactive ion beam (RIB) production in order of optimizing the re-acceleration of the radioactive element ions produced by a primary beam in a thick target. Charge breeding is achieved by means of a device capable of increasing the ion charge state from 1+ to a desired value n+. In order to get high intensity RIB, experiments with charge breeding of very high efficiency could be required. To reach this goal, the charge breeding simulation could help to optimize the high charge state production efficiency by finding more proper parameters for the radioactive 1+ ions. In this paper a device based on an electron beam ion source (EBIS) is considered. In order to study that problem, a code already developed for studying the ion selective containment in an EBIS with RF quadrupoles, BRICTEST, has been modified to simulate the ion charge state breeding rate for different 1+ ion injection conditions. Particularly, the charge breeding simulations for an EBIS with a hollow electron beam have been studied.

  13. Analysis for an environmental friendly seedling breeding system

    NASA Astrophysics Data System (ADS)

    Qu, Y. H.; Wei, X. M.; Hou, Y. F.; Chen, B.; Chen, G. Q.; Lin, C.

    2009-04-01

    Most seedlings of crops are produced in solar greenhouse or nursery, from which some problems about energy waste and environment pollution arise. This study aims at investigating the characteristics and effect of an environmental friendly type seedling breeding system. The results demonstrate that crops can grow with a short period and little pollution in the new seedling breeding system with total manpower controllable environment that is not influenced by geography, climate and other natural conditions. By multilayer, nonplanar seedling breeding and annual batches arrangement, utilization ratio of unit area land and seedlings yield can be improved for several times and even more than 10 times. Conclusions can be obtained from the tomato seedling breeding experiments: (1) each growth index of tomato seedlings that are under the conditions of 291 μmol/m2 s artificial illumination intensity is remarkably better than those produced in greenhouse with natural lights. (2) The environment of the seedling breeding system can be accurately controlled. The segmented temperature changed management can be applied according to the photosynthetic characteristics of plants, and not affected by the outside environment, which makes each growth index of tomato seedling constant in different seasons. The seedlings thus grow strong and can achieve the level of commodity seedlings after 20-30 days. (3) The temperature and humidity environment of the seedling breeding system can be accurately controlled according to plants growth demands.

  14. Opposing selection and environmental variation modify optimal timing of breeding.

    PubMed

    Tarwater, Corey E; Beissinger, Steven R

    2013-09-17

    Studies of evolution in wild populations often find that the heritable phenotypic traits of individuals producing the most offspring do not increase proportionally in the population. This paradox may arise when phenotypic traits influence both fecundity and viability and when there is a tradeoff between these fitness components, leading to opposing selection. Such tradeoffs are the foundation of life history theory, but they are rarely investigated in selection studies. Timing of breeding is a classic example of a heritable trait under directional selection that does not result in an evolutionary response. Using a 22-y study of a tropical parrot, we show that opposing viability and fecundity selection on the timing of breeding is common and affects optimal breeding date, defined by maximization of fitness. After accounting for sampling error, the directions of viability (positive) and fecundity (negative) selection were consistent, but the magnitude of selection fluctuated among years. Environmental conditions (rainfall and breeding density) primarily and breeding experience secondarily modified selection, shifting optimal timing among individuals and years. In contrast to other studies, viability selection was as strong as fecundity selection, late-born juveniles had greater survival than early-born juveniles, and breeding later in the year increased fitness under opposing selection. Our findings provide support for life history tradeoffs influencing selection on phenotypic traits, highlight the need to unify selection and life history theory, and illustrate the importance of monitoring survival as well as reproduction for understanding phenological responses to climate change. PMID:24003118

  15. [Giardiasis in dogs in a breeding kennel].

    PubMed

    Horejs, R; Koudela, B

    1994-01-01

    Giardia intestinalis is a pathogenic protozoan which infects humans and a wide range of animals including dogs. Giardia infections in dogs have been reported by several authors. Prevalence of Giardia varies widely depending on the detection method, geographic localization, and population studied. The objective of the study reported here was to determine the prevalence of giardiasis in German Shepherd Dogs in a breeding unit. In our trial conducted over 18 months, 28 bitches, 5 adult males and 101 puppies (between 1.5 and 12 months old) were subjected to individual fecal examination for Giardia cysts, coccidial oocysts and helminth ova. Total 494 individual fecal samples were examined by the magnesium sulphate flotation technique (1.30 sp. gr) and Giardia cysts were detected in 36.2% of fecal samples. Giardia cysts were observed in 1 of 29 (3.4%) fecal samples from adult males, 11 of 157 (7.0%) fecal samples from bitches and 164 of 308 (53.2%) puppies' fecal specimens. No association between bouts of diarrhea and peaks of Giardia cysts shedding could be demonstrated. The source of infection for the pups was not ascertained, as no temporal association between shedding of Giardia cyst by bitches and their litters could be demonstrated. The majority of pups had passed peak of Giardia cyst shedding between week 6 of age 12 week of age. When Giardia infection was detected, the dogs were treated with either ornidazole (Avrazor, Léciva) at 25 mg/kg or metronidazole (Entizol, Polfa) 50 mg/kg for three to five days. Within seven days of completing a course of treatment fecal examinations were carried out on each dog to determine whether treatment had been effective.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:8184530

  16. 9 CFR 151.10 - Recognition of additional breeds and books of record.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... books of record. 151.10 Section 151.10 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Recognition of Breeds and Books of Record § 151.10 Recognition of additional breeds and books...

  17. 9 CFR 151.3 - Application for certificate of pure breeding.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... breeding. 151.3 Section 151.3 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.3 Application for certificate of pure breeding. An application for...

  18. 9 CFR 151.3 - Application for certificate of pure breeding.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... breeding. 151.3 Section 151.3 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.3 Application for certificate of pure breeding. An application for...

  19. 9 CFR 151.2 - Issuance of a certificate of pure breeding.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... breeding. 151.2 Section 151.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.2 Issuance of a certificate of pure breeding. The Administrator...

  20. 9 CFR 151.3 - Application for certificate of pure breeding.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... breeding. 151.3 Section 151.3 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.3 Application for certificate of pure breeding. An application for...

  1. Breeding Livestock. A Unit for Teachers of Vocational Agriculture. Production Agriculture Curriculum Materials Project.

    ERIC Educational Resources Information Center

    O'Bryan, Robert C.

    Designed to provide instructional materials for use by vocational agriculture teachers, this unit on breeding livestock contains materials for use in teaching the importance of breeding, the physiology of livestock breeding, reproductive processes, sire selection, and breeding systems. Lessons on each of these competencies contain the following:…

  2. 9 CFR 151.3 - Application for certificate of pure breeding.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... breeding. 151.3 Section 151.3 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.3 Application for certificate of pure breeding. An application for...

  3. 9 CFR 151.2 - Issuance of a certificate of pure breeding.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... breeding. 151.2 Section 151.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.2 Issuance of a certificate of pure breeding. The Administrator...

  4. 9 CFR 151.3 - Application for certificate of pure breeding.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... breeding. 151.3 Section 151.3 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.3 Application for certificate of pure breeding. An application for...

  5. 9 CFR 151.2 - Issuance of a certificate of pure breeding.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... breeding. 151.2 Section 151.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.2 Issuance of a certificate of pure breeding. The Administrator...

  6. 9 CFR 151.2 - Issuance of a certificate of pure breeding.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... breeding. 151.2 Section 151.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.2 Issuance of a certificate of pure breeding. The Administrator...

  7. 9 CFR 151.2 - Issuance of a certificate of pure breeding.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... breeding. 151.2 Section 151.2 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE ANIMAL BREEDS RECOGNITION OF BREEDS AND BOOKS OF RECORD OF PUREBRED ANIMALS Certification of Purebred Animals § 151.2 Issuance of a certificate of pure breeding. The Administrator...

  8. Comparative study on immunoglobulin Y transfer from breeding hens to egg yolk and progeny chicks in different breeds of poultry

    PubMed Central

    Agrawal, Ritu; Hirpurkar, S. D.; Sannat, C.; Gupta, Amit Kumar

    2016-01-01

    Aim: This study was undertaken to compare the immunoglobulin Y (IgY) level and its efficacy in laying hens of four different breeds of poultry (viz., Vanraja, Gramapriya, BlackRock, and KalingaBrown) and its relative transfer in egg yolk and chick. Materials and Methods: This study was conducted in 48 apparently healthy laying hens vaccinated with Salmonella inactivated polyvalent vaccine, eggs and progeny chicks; 12 each from four different breeds of poultry, viz., Vanraja, Gramapriya, BlackRock, and KalingaBrown. The methodology included measurement of egg and yolk weight, total protein and IgY in egg yolk, total serum protein and IgY in breeding hens, and progeny chicks and extent of IgY transfer from hens to yolk then to chicks. Further, Salmonella-specific antibodies in breeding hens, egg yolk and progeny chicks were assessed using O and H antigen by tube agglutination test. Results: The egg weight differed nonsignificantly (p>0.05) among breeds, however, breed wise significant variation (p<0.01) was reported in yolk weight. The weight of egg yolk significantly affects the total protein and IgY concentration although these levels per unit of volume did not differ. Total protein was significantly higher (p<0.01) in KalingaBrown and Gramapriya as compared to Vanraja and BlackRock. Non-significant (p>0.05) difference among breed was found in total protein of egg yolk and chick. The IgY concentration in hens, egg yolk and chick was found to be in the range of 5.35±0.63-5.83±0.65, 2.3±0.1-2.6±0.2, and 1.3±0.11-1.7±0.16 mg/ml, respectively which is uniform and independent of total protein concentration at all the three levels. Significant breed variations were not observed in maternal IgY transfer from breeding hens to chicks and were 25.62±1.42-36.06±4.34% of total IgY in parent flock. Moderate to higher rate of seroprevalence with peak titers of 1:640 against Salmonella-specific antibodies was observed in only 41.6% of breeding hens. Conclusion: No

  9. Diversifying Selection Between Pure-Breed and Free-Breeding Dogs Inferred from Genome-Wide SNP Analysis.

    PubMed

    Pilot, Małgorzata; Malewski, Tadeusz; Moura, Andre E; Grzybowski, Tomasz; Oleński, Kamil; Kamiński, Stanisław; Fadel, Fernanda Ruiz; Alagaili, Abdulaziz N; Mohammed, Osama B; Bogdanowicz, Wiesław

    2016-01-01

    Domesticated species are often composed of distinct populations differing in the character and strength of artificial and natural selection pressures, providing a valuable model to study adaptation. In contrast to pure-breed dogs that constitute artificially maintained inbred lines, free-ranging dogs are typically free-breeding, i.e., unrestrained in mate choice. Many traits in free-breeding dogs (FBDs) may be under similar natural and sexual selection conditions to wild canids, while relaxation of sexual selection is expected in pure-breed dogs. We used a Bayesian approach with strict false-positive control criteria to identify FST-outlier SNPs between FBDs and either European or East Asian breeds, based on 167,989 autosomal SNPs. By identifying outlier SNPs located within coding genes, we found four candidate genes under diversifying selection shared by these two comparisons. Three of them are associated with the Hedgehog (HH) signaling pathway regulating vertebrate morphogenesis. A comparison between FBDs and East Asian breeds also revealed diversifying selection on the BBS6 gene, which was earlier shown to cause snout shortening and dental crowding via disrupted HH signaling. Our results suggest that relaxation of natural and sexual selection in pure-breed dogs as opposed to FBDs could have led to mild changes in regulation of the HH signaling pathway. HH inhibits adhesion and the migration of neural crest cells from the neural tube, and minor deficits of these cells during embryonic development have been proposed as the underlying cause of "domestication syndrome." This suggests that the process of breed formation involved the same genetic and developmental pathways as the process of domestication. PMID:27233669

  10. Diversifying Selection Between Pure-Breed and Free-Breeding Dogs Inferred from Genome-Wide SNP Analysis

    PubMed Central

    Pilot, Małgorzata; Malewski, Tadeusz; Moura, Andre E.; Grzybowski, Tomasz; Oleński, Kamil; Kamiński, Stanisław; Fadel, Fernanda Ruiz; Alagaili, Abdulaziz N.; Mohammed, Osama B.; Bogdanowicz, Wiesław

    2016-01-01

    Domesticated species are often composed of distinct populations differing in the character and strength of artificial and natural selection pressures, providing a valuable model to study adaptation. In contrast to pure-breed dogs that constitute artificially maintained inbred lines, free-ranging dogs are typically free-breeding, i.e., unrestrained in mate choice. Many traits in free-breeding dogs (FBDs) may be under similar natural and sexual selection conditions to wild canids, while relaxation of sexual selection is expected in pure-breed dogs. We used a Bayesian approach with strict false-positive control criteria to identify FST-outlier SNPs between FBDs and either European or East Asian breeds, based on 167,989 autosomal SNPs. By identifying outlier SNPs located within coding genes, we found four candidate genes under diversifying selection shared by these two comparisons. Three of them are associated with the Hedgehog (HH) signaling pathway regulating vertebrate morphogenesis. A comparison between FBDs and East Asian breeds also revealed diversifying selection on the BBS6 gene, which was earlier shown to cause snout shortening and dental crowding via disrupted HH signaling. Our results suggest that relaxation of natural and sexual selection in pure-breed dogs as opposed to FBDs could have led to mild changes in regulation of the HH signaling pathway. HH inhibits adhesion and the migration of neural crest cells from the neural tube, and minor deficits of these cells during embryonic development have been proposed as the underlying cause of “domestication syndrome.” This suggests that the process of breed formation involved the same genetic and developmental pathways as the process of domestication. PMID:27233669

  11. Production objectives and breeding goals of Sahiwal cattle keepers in Kenya and implications for a breeding programme.

    PubMed

    Ilatsia, Evans D; Roessler, Regina; Kahi, Alexander K; Piepho, Hans-Peter; Zárate, Valle

    2012-03-01

    The Sahiwal breed has been used for upgrading the East African Zebu (EAZ) for improved milk production and growth performance in the southern rangelands of Kenya. Main users of this breed are Maasai pastoralists. Until now, there has been no deliberate effort to understand why these pastoralists specifically prefer to keep Sahiwal genetic resources as well as which traits are considered important by them and what is the underlying reason for this. However, this information is regarded vital for further development of the breed. A survey was conducted between May and October 2009 among Maasai pastoralists in Kajiado and Narok counties in the Southern part of Kenya, and private ranches and government farms to identify production objectives and breeding goals of Sahiwal cattle producers. Sahiwal genetic resources were mainly kept for domestic milk production and for revenue generation through milk sales and live animals. To a limited extent, they were kept for breeding and also for multiple objectives that included insurance against risks and social functions. Production aims were influenced to varying extents by various household and farmer characteristics. Sahiwal cattle and their crosses were generally perceived to be better with respect to productive traits and fertility traits when compared to the EAZ. However, the EAZ was rated higher with respect to adaptation traits. The breeding objective traits of primary importance were high milk yield and big body size, good reproductive efficiency and relatively good adaptation to local production conditions. Performance and functional traits are important breeding goals that play a major role in fulfilling the multiple production objectives. This forms the basis for the optimisation of a breeding programme for sustainable utilisation to meet the needs of Sahiwal cattle producers. PMID:21796425

  12. An Index to PGE-Ni-Cr Deposits and Occurrences in Selected Mineral-Occurrence Databases

    USGS Publications Warehouse

    Causey, J. Douglas; Galloway, John P.; Zientek, Michael L.

    2009-01-01

    Databases of mineral deposits and occurrences are essential to conducting assessments of undiscovered mineral resources. In the USGS's (U.S. Geological Survey) global assessment of undiscovered resources of copper, potash, and the platinum-group elements (PGE), only a few mineral deposit types will be evaluated. For example, only porphyry-copper and sediment-hosted copper deposits will be considered for the copper assessment. To support the global assessment, the USGS prepared comprehensive compilations of the occurrences of these two deposit types in order to develop grade and tonnage models and delineate permissive areas for undiscovered deposits of those types. This publication identifies previously published databases and database records that describe PGE, nickel, and chromium deposits and occurrences. Nickel and chromium were included in this overview because of the close association of PGE with nickel and chromium mineralization. Users of this database will need to refer to the original databases for detailed information about the deposits and occurrences. This information will be used to develop a current and comprehensive global database of PGE deposits and occurrences.

  13. The Occurrence of Erionite at Yucca Mountain

    SciTech Connect

    NA

    2004-07-01

    The naturally-occurring zeolite mineral erionite has a fibrous morphology and is a known human carcinogen (inhalation hazard). Erionite has been found typically in very small quantities and restricted occurrences in the course of mineralogic characterization of Yucca Mountain as a host for a high-level nuclear waste repository. The first identification of erionite was made in 1984 on the basis of morphology and chemical composition and later confirmed by X-ray diffraction analysis. It was found in the lower vitrophyre (Tptpv3) of the Topopah Spring Tuff in a borehole sidewall sample. Most erionite occurrences identified at Yucca Mountain are in the Topopah Spring Tuff, within an irregular zone of transition between the lower boundary of devitrified tuff and underlying glassy tuff. This zone is fractured and contains intermingled devitrified and vitric tuff. In 1997, a second host of erionite mineralization was identified in the Exploratory Studies Facility within and adjacent to a high-angle fracture/breccia zone transgressing the boundary between the lowermost devitrified tuff (Tpcplnc) and underlying moderately welded vitric tuff (Tpcpv2) of the Tiva Canyon Tuff. The devitrified-vitric transition zones where erionite is found tend to have complex secondary-mineral assemblages, some of very localized occurrence. Secondary minerals in addition to erionite may include smectite, heulandite-clinoptilolite, chabazite, opal-A, opal-CT, cristobalite, quartz, kenyaite, and moganite. Incipient devitrification within the Topopah Spring Tuff transition zone includes patches that are highly enriched in potassium feldspar relative to the precursor volcanic glass. Geochemical conditions during glass alteration may have led to local evolution of potassium-rich fluids. Thermodynamic modeling of zeolite stability shows that erionite and chabazite stability fields occur only at aqueous K concentrations much higher than in present Yucca Mountain waters. The association of erionite

  14. Global potential of dust devil occurrence

    NASA Astrophysics Data System (ADS)

    Jemmett-Smith, Bradley; Marsham, John; Knippertz, Peter; Gilkeson, Carl

    2014-05-01

    Mineral dust is a key constituent in the climate system. Airborne mineral dust forms the largest component of the global aerosol budget by mass and subsequently affects climate, weather and biogeochemical processes. There remains large uncertainty in the quantitative estimates of the dust cycle. Dry boundary-layer convection serves as an effective mechanism for dust uplift, typically through a combination of rotating dust devils and non-rotating larger and longer-lived convective plumes. These microscale dry-convective processes occur over length scales of several hundred metres or less. They are difficult to observe and model, and therefore their contribution to the global dust budget is highly uncertain. Using an analytical approach to extrapolate limited observations, Koch and Renno (2006) suggest that dust devils and plumes could contribute as much as 35%. Here, we use a new method for quantifying the potential of dust devil occurrence to provide an alternative perspective on this estimate. Observations have shown that dust devil and convective plume occurrence is favoured in hot arid regions under relatively weak background winds, large ground-to-air temperature gradients and deep dry convection. By applying such known constraints to operational analyses from the European Centre for Medium Range Weather Forecasts (ECMWF), we provide, to the best of the authors' knowledge, the first hourly estimates of dust devil occurrence including an analysis of sensitivity to chosen threshold uplift. The results show the expected diurnal variation and allow an examination of the seasonal cycle and day-to-day variations in the conditions required for dust devil formation. They confirm that desert regions are expected to have by far the highest frequency of dry convective vortices, with winds capable of dust uplift. This approach is used to test the findings of Koch and Renno (2006). Koch J., Renno N. (2006). The role of convective plumes and vortices on the global aerosol

  15. Simultaneous DNA-based diet analysis of breeding, non-breeding and chick Adélie penguins.

    PubMed

    McInnes, Julie C; Emmerson, Louise; Southwell, Colin; Faux, Cassandra; Jarman, Simon N

    2016-01-01

    As central place foragers, breeding penguins are restricted in foraging range by the need to return to the colony to feed chicks. Furthermore, breeding birds must balance energetic gain from self-feeding with the costs of returning to provision young. Non-breeding birds, however, are likely to be less restricted in foraging range and lack the high energy demands of provisioning, therefore may consume different prey to breeders. We used DNA dietary analysis to determine whether there was a difference in provisioning and self-feeding diet by identifying prey DNA in scat samples from breeding and chick Adélie penguins at two locations in East Antarctica. We also investigated diet differences between breeders and non-breeders at one site. Although previous work shows changing foraging behaviour between chick provisioning and self-feeding, our results suggest no significant differences in the main prey groups consumed by chicks and breeders at either site or between breeding stages. This may reflect the inability of penguins to selectively forage when provisioning, or resources were sufficient for all foraging needs. Conversely, non-breeders were found to consume different prey groups to breeders, which may reflect less restricted foraging ranges, breeders actively selecting particular prey during breeding or reduced foraging experience of non-breeders. PMID:26909171

  16. Post-breeding migration of Dutch-breeding black-tailed godwits: timing, routes, use of stopovers, and nonbreeding destinations

    USGS Publications Warehouse

    Hooijmeijer, Jos C. E. W.; Senner, Nathan R.; Tibbitts, T. Lee; Gill, Robert E., Jr.; Douglas, David C.; Bruinzeel, Leo W.; Wymenga, Eddy; Piersma, Theunis

    2014-01-01

    Conservation of long-distance migratory shorebirds is complex because these species use habitats spread across continents and hemispheres, making identification of critical habitats and potential bottlenecks in the annual cycle especially difficult. The population of Black-tailed Godwits that breeds in Western Europe, Limosa limosa limosa, has declined precipitously over the past few decades. Despite significant efforts to identify the root causes of this decline, much remains unclear. To better understand the migratory timing, use of stopover and nonbreeding sites, and the potential impact of breeding success on these parameters, we attached 15 Argos satellite transmitters and 10 geolocation tracking devices to adult godwits nearing completion of incubation at breeding sites in southwest Friesland, The Netherlands during the spring of 2009. We successfully tracked 16 adult godwits for their entire southward migration and two others for part of it. Three migration patterns and four regions of use were apparent. Most godwits left their breeding sites and proceeded south directly to stopover sites in the Mediterranean — e.g. Spain, Portugal, and Morocco — before flying on to non-breeding sites in West Africa. Other individuals spent the entire nonbreeding season in the Mediterranean. A third pattern included a few individuals that flew nonstop from their Dutch breeding sites to nonbreeding sites in West Africa. Tracking data from this study will be immediately useful for conservation efforts focused on preserving the dispersed network of sites used by godwits during their southward migration.

  17. Simultaneous DNA-based diet analysis of breeding, non-breeding and chick Adélie penguins

    PubMed Central

    McInnes, Julie C.; Emmerson, Louise; Southwell, Colin; Faux, Cassandra; Jarman, Simon N.

    2016-01-01

    As central place foragers, breeding penguins are restricted in foraging range by the need to return to the colony to feed chicks. Furthermore, breeding birds must balance energetic gain from self-feeding with the costs of returning to provision young. Non-breeding birds, however, are likely to be less restricted in foraging range and lack the high energy demands of provisioning, therefore may consume different prey to breeders. We used DNA dietary analysis to determine whether there was a difference in provisioning and self-feeding diet by identifying prey DNA in scat samples from breeding and chick Adélie penguins at two locations in East Antarctica. We also investigated diet differences between breeders and non-breeders at one site. Although previous work shows changing foraging behaviour between chick provisioning and self-feeding, our results suggest no significant differences in the main prey groups consumed by chicks and breeders at either site or between breeding stages. This may reflect the inability of penguins to selectively forage when provisioning, or resources were sufficient for all foraging needs. Conversely, non-breeders were found to consume different prey groups to breeders, which may reflect less restricted foraging ranges, breeders actively selecting particular prey during breeding or reduced foraging experience of non-breeders. PMID:26909171

  18. Universality in solar flare and earthquake occurrence.

    PubMed

    de Arcangelis, L; Godano, C; Lippiello, E; Nicodemi, M

    2006-02-10

    Earthquakes and solar flares are phenomena involving huge and rapid releases of energy characterized by complex temporal occurrence. By analyzing available experimental catalogs, we show that the stochastic processes underlying these apparently different phenomena have universal properties. Namely, both problems exhibit the same distributions of sizes, interoccurrence times, and the same temporal clustering: We find after flare sequences with power law temporal correlations as the Omori law for seismic sequences. The observed universality suggests a common approach to the interpretation of both phenomena in terms of the same driving physical mechanism. PMID:16486917

  19. Universality in Solar Flare and Earthquake Occurrence

    SciTech Connect

    De Arcangelis, L.; Godano, C.; Lippiello, E.; Nicodemi, M.

    2006-02-10

    Earthquakes and solar flares are phenomena involving huge and rapid releases of energy characterized by complex temporal occurrence. By analyzing available experimental catalogs, we show that the stochastic processes underlying these apparently different phenomena have universal properties. Namely, both problems exhibit the same distributions of sizes, interoccurrence times, and the same temporal clustering: We find after flare sequences with power law temporal correlations as the Omori law for seismic sequences. The observed universality suggests a common approach to the interpretation of both phenomena in terms of the same driving physical mechanism.

  20. Cooperative breeding in birds: a comparative test of the life history hypothesis

    PubMed Central

    Arnold, K. E.; Owens, I. P. F.

    1998-01-01

    In approximately 3.2% of bird species individuals regularly forgo the opportunity to breed independently and instead breed cooperatively with other conspecifics, either as non-reproductive 'helpers' or as co-breeders. The traditional explanation for cooperative breeding is that the opportunities for breeding independently are limited owing to peculiar features of the species' breeding ecology. However, it has proved remarkably difficult to find any common ecological correlates of cooperative breeding in birds. This difficulty has led to the 'life history hypothesis', which suggests that the common feature of cooperatively breeding birds is their great longevity, rather than any particular feature of their breeding ecology. Here, we use a comparative method to test the life history hypothesis by looking for correlations between life history variation and variation in the frequency of cooperative breeding. First, we find that cooperative breeding in birds is not randomly distributed, but concentrated in certain families, thus supporting the idea that there may be a common basis to cooperative breeding in birds. Second, increases in the level of cooperative breeding are strongly associated with decreases in annual adult mortality and modal clutch size. Third, the proportion of cooperatively breeding species per family is correlated with a low family-typical value of annual mortality, suggesting that low mortality predisposes cooperative breeding rather than vice versa. Finally, the low rate of mortality typically found in cooperatively breeding species is associated with increasing sedentariness, lower latitudes, and decreased environmental fluctuation. We suggest that low annual mortality is the key factor that predisposes avian lineages to cooperative breeding, then ecological changes, such as becoming sedentary, further slow population turnover and reduce opportunities for independent breeding. As the traditional explanation suggests, the breeding habitat of

  1. 10 CFR 840.3 - Determination of extraordinary nuclear occurrence.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 10 Energy 4 2012-01-01 2012-01-01 false Determination of extraordinary nuclear occurrence. 840.3 Section 840.3 Energy DEPARTMENT OF ENERGY EXTRAORDINARY NUCLEAR OCCURRENCES § 840.3 Determination of extraordinary nuclear occurrence. If the DOE determines that both of the criteria set forth in § 840.4 and §...

  2. 46 CFR 326.4 - Reports of accidents and occurrences.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 46 Shipping 8 2011-10-01 2011-10-01 false Reports of accidents and occurrences. 326.4 Section 326... MARINE PROTECTION AND INDEMNITY INSURANCE UNDER AGREEMENTS WITH AGENTS § 326.4 Reports of accidents and occurrences. The Agent shall report every accident or occurrence of a P&I nature promptly to both the...

  3. 10 CFR 840.3 - Determination of extraordinary nuclear occurrence.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 10 Energy 4 2014-01-01 2014-01-01 false Determination of extraordinary nuclear occurrence. 840.3 Section 840.3 Energy DEPARTMENT OF ENERGY EXTRAORDINARY NUCLEAR OCCURRENCES § 840.3 Determination of extraordinary nuclear occurrence. If the DOE determines that both of the criteria set forth in § 840.4 and §...

  4. 10 CFR 840.3 - Determination of extraordinary nuclear occurrence.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 10 Energy 4 2013-01-01 2013-01-01 false Determination of extraordinary nuclear occurrence. 840.3 Section 840.3 Energy DEPARTMENT OF ENERGY EXTRAORDINARY NUCLEAR OCCURRENCES § 840.3 Determination of extraordinary nuclear occurrence. If the DOE determines that both of the criteria set forth in § 840.4 and §...

  5. 21 CFR 1002.20 - Reporting of accidental radiation occurrences.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 21 Food and Drugs 8 2014-04-01 2014-04-01 false Reporting of accidental radiation occurrences... SERVICES (CONTINUED) RADIOLOGICAL HEALTH RECORDS AND REPORTS Manufacturers' Reports on Accidental Radiation Occurrences § 1002.20 Reporting of accidental radiation occurrences. (a) Manufacturers of electronic...

  6. 21 CFR 1002.20 - Reporting of accidental radiation occurrences.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Reporting of accidental radiation occurrences... SERVICES (CONTINUED) RADIOLOGICAL HEALTH RECORDS AND REPORTS Manufacturers' Reports on Accidental Radiation Occurrences § 1002.20 Reporting of accidental radiation occurrences. (a) Manufacturers of electronic...

  7. 21 CFR 1002.20 - Reporting of accidental radiation occurrences.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Reporting of accidental radiation occurrences... SERVICES (CONTINUED) RADIOLOGICAL HEALTH RECORDS AND REPORTS Manufacturers' Reports on Accidental Radiation Occurrences § 1002.20 Reporting of accidental radiation occurrences. (a) Manufacturers of electronic...

  8. 21 CFR 1002.20 - Reporting of accidental radiation occurrences.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 21 Food and Drugs 8 2013-04-01 2013-04-01 false Reporting of accidental radiation occurrences... SERVICES (CONTINUED) RADIOLOGICAL HEALTH RECORDS AND REPORTS Manufacturers' Reports on Accidental Radiation Occurrences § 1002.20 Reporting of accidental radiation occurrences. (a) Manufacturers of electronic...

  9. 21 CFR 1002.20 - Reporting of accidental radiation occurrences.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 21 Food and Drugs 8 2012-04-01 2012-04-01 false Reporting of accidental radiation occurrences... SERVICES (CONTINUED) RADIOLOGICAL HEALTH RECORDS AND REPORTS Manufacturers' Reports on Accidental Radiation Occurrences § 1002.20 Reporting of accidental radiation occurrences. (a) Manufacturers of electronic...

  10. 10 CFR 840.3 - Determination of extraordinary nuclear occurrence.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 4 2011-01-01 2011-01-01 false Determination of extraordinary nuclear occurrence. 840.3 Section 840.3 Energy DEPARTMENT OF ENERGY EXTRAORDINARY NUCLEAR OCCURRENCES § 840.3 Determination of extraordinary nuclear occurrence. If the DOE determines that both of the criteria set forth in § 840.4 and §...

  11. 10 CFR 840.3 - Determination of extraordinary nuclear occurrence.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 10 Energy 4 2010-01-01 2010-01-01 false Determination of extraordinary nuclear occurrence. 840.3 Section 840.3 Energy DEPARTMENT OF ENERGY EXTRAORDINARY NUCLEAR OCCURRENCES § 840.3 Determination of extraordinary nuclear occurrence. If the DOE determines that both of the criteria set forth in § 840.4 and §...

  12. 46 CFR 326.4 - Reports of accidents and occurrences.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 46 Shipping 8 2010-10-01 2010-10-01 false Reports of accidents and occurrences. 326.4 Section 326... MARINE PROTECTION AND INDEMNITY INSURANCE UNDER AGREEMENTS WITH AGENTS § 326.4 Reports of accidents and occurrences. The Agent shall report every accident or occurrence of a P&I nature promptly to both the...

  13. Genomic Tools in Cowpea Breeding Programs: Status and Perspectives

    PubMed Central

    Boukar, Ousmane; Fatokun, Christian A.; Huynh, Bao-Lam; Roberts, Philip A.; Close, Timothy J.

    2016-01-01

    Cowpea is one of the most important grain legumes in sub-Saharan Africa (SSA). It provides strong support to the livelihood of small-scale farmers through its contributions to their nutritional security, income generation and soil fertility enhancement. Worldwide about 6.5 million metric tons of cowpea are produced annually on about 14.5 million hectares. The low productivity of cowpea is attributable to numerous abiotic and biotic constraints. The abiotic stress factors comprise drought, low soil fertility, and heat while biotic constraints include insects, diseases, parasitic weeds, and nematodes. Cowpea farmers also have limited access to quality seeds of improved varieties for planting. Some progress has been made through conventional breeding at international and national research institutions in the last three decades. Cowpea improvement could also benefit from modern breeding methods based on molecular genetic tools. A number of advances in cowpea genetic linkage maps, and quantitative trait loci associated with some desirable traits such as resistance to Striga, Macrophomina, Fusarium wilt, bacterial blight, root-knot nematodes, aphids, and foliar thrips have been reported. An improved consensus genetic linkage map has been developed and used to identify QTLs of additional traits. In order to take advantage of these developments single nucleotide polymorphism (SNP) genotyping is being streamlined to establish an efficient workflow supported by genotyping support service (GSS)-client interactions. About 1100 SNPs mapped on the cowpea genome were converted by LGC Genomics to KASP assays. Several cowpea breeding programs have been exploiting these resources to implement molecular breeding, especially for MARS and MABC, to accelerate cowpea variety improvement. The combination of conventional breeding and molecular breeding strategies, with workflow managed through the CGIAR breeding management system (BMS), promises an increase in the number of improved

  14. An Overview of Ten Italian Horse Breeds through Mitochondrial DNA

    PubMed Central

    Capodiferro, Marco Rosario; Capomaccio, Stefano; Buttazzoni, Luca; Biggio, Giovanni Paolo; Cherchi, Raffaele; Albertini, Emidio; Olivieri, Anna; Cappelli, Katia; Achilli, Alessandro; Silvestrelli, Maurizio

    2016-01-01

    Background The climatic and cultural diversity of the Italian Peninsula triggered, over time, the development of a great variety of horse breeds, whose origin and history are still unclear. To clarify this issue, analyses on phenotypic traits and genealogical data were recently coupled with molecular screening. Methodology To provide a comprehensive overview of the horse genetic variability in Italy, we produced and phylogenetically analyzed 407 mitochondrial DNA (mtDNA) control-region sequences from ten of the most important Italian riding horse and pony breeds: Bardigiano, Esperia, Giara, Lipizzan, Maremmano, Monterufolino, Murgese, Sarcidano, Sardinian Anglo-Arab, and Tolfetano. A collection of 36 Arabian horses was also evaluated to assess the genetic consequences of their common use for the improvement of some local breeds. Conclusions In Italian horses, all previously described domestic mtDNA haplogroups were detected as well as a high haplotype diversity. These findings indicate that the ancestral local mares harbored an extensive genetic diversity. Moreover, the limited haplotype sharing (11%) with the Arabian horse reveals that its impact on the autochthonous mitochondrial gene pools during the final establishment of pure breeds was marginal, if any. The only significant signs of genetic structure and differentiation were detected in the geographically most isolated contexts (i.e. Monterufolino and Sardinian breeds). Such a geographic effect was also confirmed in a wider breed setting, where the Italian pool stands in an intermediate position together with most of the other Mediterranean stocks. However, some notable exceptions and peculiar genetic proximities lend genetic support to historical theories about the origin of specific Italian breeds. PMID:27054850

  15. Definition of animal breeding goals for sustainable production systems.

    PubMed

    Olesen, I; Groen, A F; Gjerde, B

    2000-03-01

    What we do is determined by the way we "view" a complex issue and what sample of issues or events we choose to deal with. In this paper, a model based on a communal, cultural, or people-centered worldview, informed by a subjective epistemology and a holistic ontology, is considered. Definitions and interpretations of sustainable agriculture are reviewed. Common elements in published definitions of sustainable agriculture and animal production among those who seek long-term and equitable solutions for food production are resource efficiency, profitability, productivity, environmental soundness, biodiversity, social viability, and ethical aspects. Possible characteristics of future sustainable production systems and further development are presented. The impact of these characteristics on animal breeding goals is reviewed. The need for long-term biologically, ecologically, and sociologically sound breeding goals is emphasized, because animal breeding determined only by short-term market forces leads to unwanted side effects. Hence, a procedure for defining animal breeding goals with ethical priorities and weighing of market and non-market values is suggested. Implementation of non-market as well as market economic trait values in the aggregate genotype, as suggested, may allow for breeding programs that contribute to sustainable production systems. Examples of breeding goals in salmon, cattle, and pigs are given, and the resulting genetic responses are evaluated with respect to economic profit (or costs) and other criteria of sustainability. Important prerequisites for breeding programs for sustainable production are appropriate governmental policies, awareness of our way of thinking, and a more communal worldview informed by a subjective epistemology and a holistic ontology. PMID:10764063

  16. Genomic Tools in Cowpea Breeding Programs: Status and Perspectives.

    PubMed

    Boukar, Ousmane; Fatokun, Christian A; Huynh, Bao-Lam; Roberts, Philip A; Close, Timothy J

    2016-01-01

    Cowpea is one of the most important grain legumes in sub-Saharan Africa (SSA). It provides strong support to the livelihood of small-scale farmers through its contributions to their nutritional security, income generation and soil fertility enhancement. Worldwide about 6.5 million metric tons of cowpea are produced annually on about 14.5 million hectares. The low productivity of cowpea is attributable to numerous abiotic and biotic constraints. The abiotic stress factors comprise drought, low soil fertility, and heat while biotic constraints include insects, diseases, parasitic weeds, and nematodes. Cowpea farmers also have limited access to quality seeds of improved varieties for planting. Some progress has been made through conventional breeding at international and national research institutions in the last three decades. Cowpea improvement could also benefit from modern breeding methods based on molecular genetic tools. A number of advances in cowpea genetic linkage maps, and quantitative trait loci associated with some desirable traits such as resistance to Striga, Macrophomina, Fusarium wilt, bacterial blight, root-knot nematodes, aphids, and foliar thrips have been reported. An improved consensus genetic linkage map has been developed and used to identify QTLs of additional traits. In order to take advantage of these developments single nucleotide polymorphism (SNP) genotyping is being streamlined to establish an efficient workflow supported by genotyping support service (GSS)-client interactions. About 1100 SNPs mapped on the cowpea genome were converted by LGC Genomics to KASP assays. Several cowpea breeding programs have been exploiting these resources to implement molecular breeding, especially for MARS and MABC, to accelerate cowpea variety improvement. The combination of conventional breeding and molecular breeding strategies, with workflow managed through the CGIAR breeding management system (BMS), promises an increase in the number of improved

  17. Analysis of copy number variations among diverse cattle breeds

    PubMed Central

    Liu, George E.; Hou, Yali; Zhu, Bin; Cardone, Maria Francesca; Jiang, Lu; Cellamare, Angelo; Mitra, Apratim; Alexander, Leeson J.; Coutinho, Luiz L.; Dell'Aquila, Maria Elena; Gasbarre, Lou C.; Lacalandra, Gianni; Li, Robert W.; Matukumalli, Lakshmi K.; Nonneman, Dan; de A. Regitano, Luciana C.; Smith, Tim P.L.; Song, Jiuzhou; Sonstegard, Tad S.; Van Tassell, Curt P.; Ventura, Mario; Eichler, Evan E.; McDaneld, Tara G.; Keele, John W.

    2010-01-01

    Genomic structural variation is an important and abundant source of genetic and phenotypic variation. Here, we describe the first systematic and genome-wide analysis of copy number variations (CNVs) in modern domesticated cattle using array comparative genomic hybridization (array CGH), quantitative PCR (qPCR), and fluorescent in situ hybridization (FISH). The array CGH panel included 90 animals from 11 Bos taurus, three Bos indicus, and three composite breeds for beef, dairy, or dual purpose. We identified over 200 candidate CNV regions (CNVRs) in total and 177 within known chromosomes, which harbor or are adjacent to gains or losses. These 177 high-confidence CNVRs cover 28.1 megabases or ∼1.07% of the genome. Over 50% of the CNVRs (89/177) were found in multiple animals or breeds and analysis revealed breed-specific frequency differences and reflected aspects of the known ancestry of these cattle breeds. Selected CNVs were further validated by independent methods using qPCR and FISH. Approximately 67% of the CNVRs (119/177) completely or partially span cattle genes and 61% of the CNVRs (108/177) directly overlap with segmental duplications. The CNVRs span about 400 annotated cattle genes that are significantly enriched for specific biological functions, such as immunity, lactation, reproduction, and rumination. Multiple gene families, including ULBP, have gone through ruminant lineage-specific gene amplification. We detected and confirmed marked differences in their CNV frequencies across diverse breeds, indicating that some cattle CNVs are likely to arise independently in breeds and contribute to breed differences. Our results provide a valuable resource beyond microsatellites and single nucleotide polymorphisms to explore the full dimension of genetic variability for future cattle genomic research. PMID:20212021

  18. Meteotsunami occurrences and causes in Lake Michigan

    NASA Astrophysics Data System (ADS)

    Bechle, Adam J.; Kristovich, David A. R.; Wu, Chin H.

    2015-12-01

    The occurrence of meteotsunamis in Lake Michigan is quantified at 10 locations from up to 20 years of historical water level records. Meteotsunami height data are fit with Pareto Type 1 and Generalized Pareto Distributions to estimate exceedance probabilities. The annual meteotsunami return level exceeds 0.25 m at all but two stations, with the largest annual return level of 0.62 m at Calumet Harbor. Analysis of radar imagery indicates that Lake Michigan meteotsunamis are associated primarily with convective storm structures, with a considerable contribution from frontal storms as well. Meteotsunami association with convective storm structures is more prevalent in southern Lake Michigan while frontal storm structures have a greater association with meteotsunamis in northern Lake Michigan. Water depths in southern Lake Michigan are conducive to Proudman resonance with convective storms while the northern Lake Michigan is too deep to meet Proudman resonance criteria, suggesting Greenspan edge wave resonance as the likely generation mechanism. Interestingly, meteotsunami events occur primarily in the late spring and early summer, approximately 1 month before the peak convective storm season but after the peak cyclone season. Overall, this statistical analysis provides valuable insight into the spatial and temporal trends in meteotsunami occurrence in Lake Michigan needed to estimate the risk posed by these dangerous coastal hazards.

  19. Occurrence of potentially pathogenic arcobacters in shellfish.

    PubMed

    Mottola, Anna; Bonerba, Elisabetta; Figueras, Maria José; Pérez-Cataluña, Alba; Marchetti, Patrizia; Serraino, Andrea; Bozzo, Giancarlo; Terio, Valentina; Tantillo, Giuseppina; Di Pinto, Angela

    2016-08-01

    Considering that several recent cases of human gastroenteritis have been associated with species from the Arcobacter genus, and that few data are currently available about the occurrence of this genus in Italian shellfish, the aim of the present study was to evaluate the occurrence of Arcobacter spp. and the presence of virulence-associated genes. The approach consisted of cultural and biomolecular (multiplex-PCR and 16S-RFLP) methods identifying isolates, followed by PCR assays aimed at the cadF, ciaB, cjl349, irgA, hecA putative virulence genes. Arcobacter spp. was detected in 16/70 (22.8%) shellfish samples. Specifically, Arcobacter spp. was highlighted in 10/42 (23.8%) mussel and in 6/28 (21.4%) clam samples. Subsequently, biomolecular assays revealed Arcobacter butzleri in 12/16 (75%) and Arcobacter cryaerophilus 1B in 4/16 (25%) isolates. PCRs aimed at the five putative virulence genes demonstrated widespread distribution of these genes among Arcobacter isolates and some differences from the results published by other authors. Our research provides more information regarding the health risks associated with the consumption of raw bivalve molluscs and underlines the need to implement an adequate control plan by performing intensive and continuous monitoring in order to guarantee human health. PMID:27052698

  20. Occurrence of Ionophores in the Danish Environment

    PubMed Central

    Bak, Søren Alex; Björklund, Erland

    2014-01-01

    Antibiotics in the environment are a potential threat to environmental ecosystems as well as human health and safety. Antibiotics are designed to have a biological effect at low doses, and the low levels detected in the environment have turned focus on the need for more research on environmental occurrence and fate, to assess the risk and requirement for future regulation. This article describes the first occurrence study of the antibiotic polyether ionophores (lasalocid, monensin, narasin, and salinomycin) in the Danish environment. Various environmental matrices (river water, sediment, and soil) have been evaluated during two different sampling campaigns carried out in July 2011 and October 2012 in an agricultural area of Zealand, Denmark. Lasalocid was not detected in any of the samples. Monensin was measured at a concentration up to 20 ng·L−1 in river water and 13 µg·kg−1 dry weight in the sediment as well as being the most frequently detected ionophore in the soil samples with concentrations up to 8 µg·kg−1 dry weight. Narasin was measured in sediment samples at 2 µg·kg−1 dry weight and in soil between 1 and 18 µg·kg−1 dry weight. Salinomycin was detected in a single soil sample at a concentration of 30 µg·kg−1 dry weight.

  1. Breed and other effects on reproductive traits and breeding soundness categorization in young beef bulls in Florida.

    PubMed

    Chenoweth, P J; Chase, C C; Thatcher, M J; Wilcox, C J; Larsen, R E

    1996-11-01

    Yearling, grass-fed, beef bulls at the USDA Subtropical Agricultural Research Station, Brooksville, Florida, were assessed for physical and semen traits in January, April, July and October of 1991 (Trial 1) and 1992 (Trial 2). Bulls were given a breeding soundness evaluation (BSE) using revised semen and scrotal circumference (SC) criteria. In Trial 1, the bulls consisted of Angus (n = 15), Brahman (n = 14), Hereford (n = 15) and Senepol (n = 14). In Trial 2, the breeds were Angus (n = 15), Brahman (n = 16), Romosinuano (n = 13) and Nellore x Brahman (n = 9). Trial bulls generally showed delayed growth compared with grain-fed bulls in temperate environments. Breed influenced semen traits (percentage sperm motility, normal spermatozoa and those with primary abnormalities) in both trials. Temperate Bos taurus breeds (Angus, Hereford) were generally superior to Bos indicus breeds (Brahman, Nellore x Brahman). Tropically-adapted Bos taurus breeds (Senepol, Romosinuano) were intermediate for those traits tested. In general, tropically-adapted Bos taurus breeds were more similar in reproductive development to temperate Bos taurus than to Bos indicus breeds. Breed by test period interactions occurred and were mainly influenced by delayed sexual maturity of Bos indicus bulls. Qualitative semen traits increased with bull age, particularly from 12 to 18 mo. Scrotal circumference development was slower in the Bos indicus breeds. Bulls of satisfactory BSE status at 18.1 to 22 mo of age were 73.9% in Trial 1 and 58.5% in Trial 2. Brahman bulls had the least satisfactory BSE scores in both years (Trial 1, 44.4%; Trial 2, 22.2%). Most bulls failed to achieve satisfactory BSE status due to a small SC relative to age (Trial 1, 66%; Trial 2, 72%). The most efficacious use of the BSE was > or = 15 mo in Bos taurus bulls and > 18 mo for Bos indicus bulls. Although the BSE has proven to be useful for the assessment of young, pasture-raised bulls in semi-tropical environments, use of SC

  2. Occurrence of peri-parturient rise in trichostrongylid nematode egg output in Dorper ewes in a semi-arid area of Kajiado District of Kenya.

    PubMed

    Ng'ang'a, C J; Munyua, W K; Maingi, N; Kanyari, P W N

    2004-01-01

    An investigation on the occurrence of peri-parturient rise in trichostrongylid nematode egg output in breeding ewes was carried out on a Ranch in the semi-arid area of Kajiado District in Kenya during the period May 1999-April 2000. During the study, 20 ewes randomly selected from the breeding stock and 20 un-mated female yearlings were monitored for faecal strongyle egg output every 3 weeks. A significant peri-parturient rise in faecal egg output occurred at around the time of lambing and throughout the lactation period in the mated ewes, but not in the un-mated yearlings. The occurrence of peri-parturient rise in breeding ewes towards the end of the dry season and at the onset of the short rains was enhanced by the resumption of development of hypobiotic larvae. Self-cure occurred in the un-mated yearlings in September 1999 during the dry season and in November-December 1999 during the wet season, but was less obvious in the pregnant and lactating ewes. The peri-parturient ewes contributed to higher pasture contamination at a time when highly susceptible lambs were grazing alongside. Therefore, the control of gastrointestinal nematode parasites in ewes in this area should aim at reducing the effects of this phenomenon through treatment of ewes about 2-3 weeks to lambing and during lactation. PMID:15533289

  3. Plant Breeding and Drought in C3 Cereals: What Should We Breed For?

    PubMed Central

    ARAUS, J. L.; SLAFER, G. A.; REYNOLDS, M. P.; ROYO, C.

    2002-01-01

    Drought is the main abiotic constraint on cereal yield. Analysing physiological determinants of yield responses to water may help in breeding for higher yield and stability under drought conditions. The traits to select (either for stress escape, avoidance or tolerance) and the framework where breeding for drought stress is addressed will depend on the level and timing of stress in the targeted area. If the stress is severe, breeding under stress‐free conditions may be unsuccessful and traits that confer survival may become a priority. However, selecting for yield itself under stress‐alleviated conditions appears to produce superior cultivars, not only for optimum environments, but also for those characterized by frequent mild and moderate stress conditions. This implies that broad avoidance/tolerance to mild–moderate stresses is given by constitutive traits also expressed under stress‐free conditions. In this paper, we focus on physiological traits that contribute to improved productivity under mild–moderate drought. Increased crop performance may be achieved through improvements in water use, water‐use efficiency and harvest index. The first factor is relevant when soil water remains available at maturity or when deep‐rooted genotypes access water in the soil profile that is not normally available; the two latter conditions become more important when all available water is exhausted by the end of the crop cycle. Independent of the mechanism operating, a canopy able to use more water than another would have more open stomata and therefore higher canopy temperature depression, and 13C discrimination (Δ13C) in plant matter. The same traits would also seem to be relevant when breeding for hot, irrigated environments. Where additional water is not available to the crop, higher water‐use efficiency (WUE) appears to be an alternative strategy to improve crop performance. In this context Δ13C constitutes a simple but reliable measure of WUE. However, in

  4. Assessing the Occurrence, Persistence, and Fate of Natural and Synthetic Steroid Estrogens in Vernal Pools

    NASA Astrophysics Data System (ADS)

    Mina, O.

    2015-12-01

    The presence of natural and synthetic estrogens in treated wastewater used for irrigation of agricultural fields poses a potential risk to surface water ecosystems. While a large number of recent studies have investigated the occurrence, fate, and transport of estrogens in the environment, the vast majority of these studies have focused on the fate of estrogens in streams and rivers. However, no studies have been conducted assessing the occurrence, persistence, and fate of estrogens in impacted sensitive aquatic ecosystems such as vernal pools. This is of particular importance because vernal pools serve as critical breeding habitat for amphibians, which are known to be sensitive to the presence of endocrine disrupting compounds. A spray irrigation system was implemented over 50 years ago at Penn State's "Living Filter" as an alternative to discharging treated wastewater to a high quality trout stream. This system introduces all of Penn State's treated wastewater onto approximately 250 ha of agricultural and forested land at a rate of ~5 cm/ha/week. More than a dozen vernal pools are impacted by this wastewater irrigation, with some ponds adjacent to irrigation laterals receiving direct inputs of the treated wastewater. The goal of this study was to assess the impact of these weekly irrigation activities on the occurrence, persistence, and fate of estrogens (17α- and 17β-estradiol, estrone, estriol, and ethinylestradiol) in 3 vernal pools during an 8-week field study. The spring 2015 study period coincided with wood frog breeding and metamorphosis. Irrigation wastewater was collected weekly and water samples near the sediment-water interface in each vernal pool were collected daily. Real-time monitoring stations continuously recorded the temperature, pH, redox potential, DO, EC, and water level at each pool. Nearly 100% of the daily samples (n>130) collected contained estrogens, and the concentrations were several times higher compared to the wastewater

  5. Predicting Breed Composition Using Breed Frequencies of 50,000 Markers from the U.S. Meat Animal Research Center 2,000 Bull Project

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Our objective was to evaluate whether breed composition of crossbred cattle could be predicted using reference breed frequencies of SNP markers on the BovineSNP50 array. Semen DNA samples of over 2,000 bulls from 16 common commercial beef breeds were genotyped using the array and used to estimate cu...

  6. Factors that affect the occurrence of fumonisin.

    PubMed

    Miller, J D

    2001-05-01

    The two important Fusarium ear rots of corn, Gibberella ear rot (Fusarium graminearum, formally F. moniliforme and allied species) and Fusarium ear rot (F. verticillioides and allied species) grow under different environmental conditions. F. graminearum grows well only between 26 and 28 degrees C and requires rain both at silking and during disease progression. F. verticillioides grows well at higher temperatures, and ear rot and fumonisin accumulation are associated with drought and insect stress and growing hybrids outside their areas of adaptation. In southern Transkei, where esophageal cancer has been associated with the consumption of F. verticillioides and fumonisin-contaminated corn, environmental conditions favor this fungus in most years. In the nearby areas where the soils, crops, food consumption, and populations are the same and where esophageal cancer is low, temperatures are cooler and F. graminearum is favored. Although F. verticillioides is associated with a disease of corn, it may be that this fungus is a mutualistic endophyte of the plant. Perhaps because of this, breeding for resistance to Fusarium ear rot has produced inconclusive results to date. The best available strategies for reducing the risk of fumonisin contents of maize are to ensure that hybrids are adapted to the environment and to limit drought stress and insect herbivory. It may also be necessary to make use of alternative strategies such as producing hybrids that contain enzymes to degrade fumonisin as it is produced. PMID:11359702

  7. Complete migration cycle of golden eagles breeding in northern Quebec

    USGS Publications Warehouse

    Brodeur, Serge; DeCarie, R.; Bird, D.M.; Fuller, Mark R.

    1996-01-01

    Radio tracking via satellite was initiated to study the year-round movements of Golden Eagles(Aquila chrysaetosc anadensis) breeding on the east coast of Hudson Bay, Quebec. In June and August 1992, six Golden Eagles(five adults and one juvenile) were marked, three of which completed their year-round movements. The eagles left their breeding area in mid- to late October and migrated to known wintering areas in the eastern United States. They used different routes but each followed the same general path during fall and spring migrations which lasted between 26 and 40 days,and 25 and 51 days, respectively. Eagles wintered from 93 to 135 days in areas located 1,650 to 3,000 km south of their breeding territory. In spring 1993, satellite telemetry located the eagles in their former breeding territory in late March, mid-April and early May. This study confirms previous suggestion that some breeding Golden Eagles wintering in eastern United States come from northern Quebec and describes the first successful tracking of the complete yearly migration cycle of a bird of prey.

  8. Genotype by environment interaction and breeding for robustness in livestock

    PubMed Central

    Rauw, Wendy M.; Gomez-Raya, Luis

    2015-01-01

    The increasing size of the human population is projected to result in an increase in meat consumption. However, at the same time, the dominant position of meat as the center of meals is on the decline. Modern objections to the consumption of meat include public concerns with animal welfare in livestock production systems. Animal breeding practices have become part of the debate since it became recognized that animals in a population that have been selected for high production efficiency are more at risk for behavioral, physiological and immunological problems. As a solution, animal breeding practices need to include selection for robustness traits, which can be implemented through the use of reaction norms analysis, or though the direct inclusion of robustness traits in the breeding objective and in the selection index. This review gives an overview of genotype × environment interactions (the influence of the environment, reaction norms, phenotypic plasticity, canalization, and genetic homeostasis), reaction norms analysis in livestock production, options for selection for increased levels of production and against environmental sensitivity, and direct inclusion of robustness traits in the selection index. Ethical considerations of breeding for improved animal welfare are discussed. The discussion on animal breeding practices has been initiated and is very alive today. This positive trend is part of the sustainable food production movement that aims at feeding 9.15 billion people not just in the near future but also beyond. PMID:26539207

  9. Exploitation of induced 2n-gametes for plant breeding.

    PubMed

    Younis, Adnan; Hwang, Yoon-Jung; Lim, Ki-Byung

    2014-02-01

    Unreduced gamete formation derived via abnormal meiotic cell division is an important approach to polyploidy breeding. This process is considered the main driving force in spontaneous polyploids formation in nature, but the potential application of these gametes to plant breeding has not been fully exploited. An effective mechanism for their artificial induction is needed to attain greater genetic variation and enable efficient use of unreduced gametes in breeding programs. Different approaches have been employed for 2n-pollen production including interspecific hybridization, manipulation of environmental factors and treatment with nitrous oxide, trifluralin, colchicine, oryzalin and other chemicals. These chemicals can act as a stimulus to produce viable 2n pollen; however, their exact mode of action, optimum concentration and developmental stages are still not known. Identification of efficient methods of inducing 2n-gamete formation will help increase pollen germination of sterile interspecific hybrids for inter-genomic recombination and introgression breeding to develop new polyploid cultivars and increase heterozygosity among plant populations. Additionally, the application of genomic tools and identification and isolation of genes and mechanisms involved in the induction of 2n-gamete will enable increased exploitation in different plant species, which will open new avenues for plant breeding. PMID:24311154

  10. Proximate drivers of spatial segregation in non-breeding albatrosses

    PubMed Central

    Clay, Thomas A.; Manica, Andrea; Ryan, Peter G.; Silk, Janet R. D.; Croxall, John P.; Ireland, Louise; Phillips, Richard A.

    2016-01-01

    Many animals partition resources to avoid competition, and in colonially-breeding species this often leads to divergent space or habitat use. During the non-breeding season, foraging constraints are relaxed, yet the patterns and drivers of segregation both between and within populations are poorly understood. We modelled habitat preference to examine how extrinsic (habitat availability and intra-specific competition) and intrinsic factors (population, sex and breeding outcome) influence the distributions of non-breeding grey-headed albatrosses Thalassarche chrysostoma tracked from two major populations, South Georgia (Atlantic Ocean) and the Prince Edward Islands (Indian Ocean). Spatial segregation was greater than expected, reflecting distinct seasonal differences in habitat selection and accessibility, and avoidance of intra-specific competition with local breeders. Previously failed birds segregated spatially from successful birds during summer, when they used less productive waters, suggesting a link between breeding outcome and subsequent habitat selection. In contrast, we found weak evidence of sexual segregation, which did not reflect a difference in habitat use. Our results indicate that the large-scale spatial structuring of albatross distributions results from interactions between extrinsic and intrinsic factors, with important implications for population dynamics. As habitat preferences differed substantially between colonies, populations should be considered independently when identifying critical areas for protection. PMID:27443877

  11. Proximate drivers of spatial segregation in non-breeding albatrosses.

    PubMed

    Clay, Thomas A; Manica, Andrea; Ryan, Peter G; Silk, Janet R D; Croxall, John P; Ireland, Louise; Phillips, Richard A

    2016-01-01

    Many animals partition resources to avoid competition, and in colonially-breeding species this often leads to divergent space or habitat use. During the non-breeding season, foraging constraints are relaxed, yet the patterns and drivers of segregation both between and within populations are poorly understood. We modelled habitat preference to examine how extrinsic (habitat availability and intra-specific competition) and intrinsic factors (population, sex and breeding outcome) influence the distributions of non-breeding grey-headed albatrosses Thalassarche chrysostoma tracked from two major populations, South Georgia (Atlantic Ocean) and the Prince Edward Islands (Indian Ocean). Spatial segregation was greater than expected, reflecting distinct seasonal differences in habitat selection and accessibility, and avoidance of intra-specific competition with local breeders. Previously failed birds segregated spatially from successful birds during summer, when they used less productive waters, suggesting a link between breeding outcome and subsequent habitat selection. In contrast, we found weak evidence of sexual segregation, which did not reflect a difference in habitat use. Our results indicate that the large-scale spatial structuring of albatross distributions results from interactions between extrinsic and intrinsic factors, with important implications for population dynamics. As habitat preferences differed substantially between colonies, populations should be considered independently when identifying critical areas for protection. PMID:27443877

  12. Cooperative breeding in South American hunter–gatherers

    PubMed Central

    Hill, Kim; Hurtado, A. Magdalena

    2009-01-01

    Evolutionary researchers have recently suggested that pre-modern human societies habitually practised cooperative breeding and that this feature helps explain human prosocial tendencies. Despite circumstantial evidence that post-reproductive females and extra-pair males both provide resources required for successful reproduction by mated pairs, no study has yet provided details about the flow of food resources by different age and sex categories to breeders and offspring, nor documented the ratio of helpers to breeders. Here, we show in two hunter–gatherer societies of South America that each breeding pair with dependent offspring on average obtained help from approximately 1.3 non-reproductive adults. Young married males and unmarried males of all ages were the main food providers, accounting for 93–100% of all excess food production available to breeding pairs and their offspring. Thus, each breeding pair with dependants was provisioned on average by 0.8 adult male helpers. The data provide no support for the hypothesis that post-reproductive females are the main provisioners of younger reproductive-aged kin in hunter–gatherer societies. Demographic and food acquisition data show that most breeding pairs can expect food deficits owing to foraging luck, health disabilities and accumulating dependency ratio of offspring in middle age, and that extra-pair provisioning may be essential to the evolved human life history. PMID:19692401

  13. Pigs in Toxicology: Breed Differences in Metabolism and Background Findings.

    PubMed

    Helke, Kristi L; Nelson, Keith N; Sargeant, Aaron M; Jacob, Binod; McKeag, Sean; Haruna, Julius; Vemireddi, Vimala; Greeley, Melanie; Brocksmith, Derek; Navratil, Nicole; Stricker-Krongrad, Alain; Hollinger, Charlotte

    2016-06-01

    Both a rodent and a nonrodent species are required for evaluation in nonclinical safety studies conducted to support human clinical trials. Historically, dogs and nonhuman primates have been the nonrodent species of choice. Swine, especially the miniature swine or minipigs, are increasingly being used in preclinical safety as an alternate nonrodent species. The pig is an appropriate option for these toxicology studies based on metabolic pathways utilized in xenobiotic biotransformation. Both similarities and differences exist in phase I and phase II biotransformation pathways between humans and pigs. There are numerous breeds of pigs, yet only a few of these breeds are characterized with regard to both xenobiotic-metabolizing enzymes and background pathology findings. Some specific differences in these enzymes based on breed and sex are known. Although swine have been used extensively in biomedical research, there is also a paucity of information in the current literature detailing the incidence of background lesions and differences between commonly used breeds. Here, the xenobiotic-metabolizing enzymes are compared between humans and pigs, and minipig background pathology changes are reviewed with emphasis on breed differences. PMID:27044377

  14. North European short-tailed breeds of sheep: a review.

    PubMed

    Dýrmundsson, O R; Niżnikowski, R

    2010-08-01

    The short-tailed sheep, native of an area stretching from Russia to Iceland, are generally considered a primitive type. These robust northern sheep seem to have been spread by Norse vikings to several countries in this area from the late eighth century to the middle of the eleventh century ad. They have several common characteristics in addition to the fluke-shaped and tapered short tail, such as a wide range of colour patterns, dual-coated wool and the ability to thrive under harsh environmental conditions, often in isolated marginal areas. While 34 short-tailed breeds of North European origin can still be identified, it is clear that their population sizes have declined in most cases and several of them are now rare and endangered. Although these breeds have mainly been confined to certain localities, some of them have gained considerable distribution due to their genetic merits, such as prolificacy. Of these, the Finnsheep and the Romanov are best known being exported to several countries in the world where their genetic material has been utilized through crossbreeding with local sheep. This has resulted in the production of some new synthetic breeds. Meat is now generally the main product of the North European short-tailed breeds and their crossbreds, whereas wool, skins and milk are normally regarded as byproducts, yet of considerable economic importance in some cases. Such breeds have clearly a role to play in sustainable grassland-based production systems in the future. PMID:22444647

  15. Network Candidate Genes in Breeding for Drought Tolerant Crops

    PubMed Central

    Krannich, Christoph Tim; Maletzki, Lisa; Kurowsky, Christina; Horn, Renate

    2015-01-01

    Climate change leading to increased periods of low water availability as well as increasing demands for food in the coming years makes breeding for drought tolerant crops a high priority. Plants have developed diverse strategies and mechanisms to survive drought stress. However, most of these represent drought escape or avoidance strategies like early flowering or low stomatal conductance that are not applicable in breeding for crops with high yields under drought conditions. Even though a great deal of research is ongoing, especially in cereals, in this regard, not all mechanisms involved in drought tolerance are yet understood. The identification of candidate genes for drought tolerance that have a high potential to be used for breeding drought tolerant crops represents a challenge. Breeding for drought tolerant crops has to focus on acceptable yields under water-limited conditions and not on survival. However, as more and more knowledge about the complex networks and the cross talk during drought is available, more options are revealed. In addition, it has to be considered that conditioning a crop for drought tolerance might require the production of metabolites and might cost the plants energy and resources that cannot be used in terms of yield. Recent research indicates that yield penalty exists and efficient breeding for drought tolerant crops with acceptable yields under well-watered and drought conditions might require uncoupling yield penalty from drought tolerance. PMID:26193269

  16. Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions

    USGS Publications Warehouse

    Royle, J. Andrew; Chandler, Richard B.; Yackulic, Charles; Nichols, James D.

    2012-01-01

    1. Understanding the factors affecting species occurrence is a pre-eminent focus of applied ecological research. However, direct information about species occurrence is lacking for many species. Instead, researchers sometimes have to rely on so-called presence-only data (i.e. when no direct information about absences is available), which often results from opportunistic, unstructured sampling. MAXENT is a widely used software program designed to model and map species distribution using presence-only data. 2. We provide a critical review of MAXENT as applied to species distribution modelling and discuss how it can lead to inferential errors. A chief concern is that MAXENT produces a number of poorly defined indices that are not directly related to the actual parameter of interest – the probability of occurrence (ψ). This focus on an index was motivated by the belief that it is not possible to estimate ψ from presence-only data; however, we demonstrate that ψ is identifiable using conventional likelihood methods under the assumptions of random sampling and constant probability of species detection. 3. The model is implemented in a convenient r package which we use to apply the model to simulated data and data from the North American Breeding Bird Survey. We demonstrate that MAXENT produces extreme under-predictions when compared to estimates produced by logistic regression which uses the full (presence/absence) data set. We note that MAXENT predictions are extremely sensitive to specification of the background prevalence, which is not objectively estimated using the MAXENT method. 4. As with MAXENT, formal model-based inference requires a random sample of presence locations. Many presence-only data sets, such as those based on museum records and herbarium collections, may not satisfy this assumption. However, when sampling is random, we believe that inference should be based on formal methods that facilitate inference about interpretable ecological quantities

  17. Breeding high-yielding drought-tolerant rice: genetic variations and conventional and molecular approaches

    PubMed Central

    Kumar, Arvind; Dixit, Shalabh; Ram, T.; Yadaw, R. B.; Mishra, K. K.; Mandal, N. P.

    2014-01-01

    The increased occurrence and severity of drought stress have led to a high yield decline in rice in recent years in drought-affected areas. Drought research at the International Rice Research Institute (IRRI) over the past decade has concentrated on direct selection for grain yield under drought. This approach has led to the successful development and release of 17 high-yielding drought-tolerant rice varieties in South Asia, Southeast Asia, and Africa. In addition to this, 14 quantitative trait loci (QTLs) showing a large effect against high-yielding drought-susceptible popular varieties were identified using grain yield as a selection criterion. Six of these (qDTY 1.1, qDTY 2.2, qDTY 3.1, qDTY 3.2, qDTY 6.1, and qDTY 12.1) showed an effect against two or more high-yielding genetic backgrounds in both the lowland and upland ecosystem, indicating their usefulness in increasing the grain yield of rice under drought. The yield of popular rice varieties IR64 and Vandana has been successfully improved through a well-planned marker-assisted backcross breeding approach, and QTL introgression in several other popular varieties is in progress. The identification of large-effect QTLs for grain yield under drought and the higher yield increase under drought obtained through the use of these QTLs (which has not been reported in other cereals) indicate that rice, because of its continuous cultivation in two diverse ecosystems (upland, drought tolerant, and lowland, drought susceptible), has benefited from the existence of larger genetic variability than in other cereals. This can be successfully exploited using marker-assisted breeding. PMID:25205576

  18. A probabilistic model for snow avalanche occurrence

    NASA Astrophysics Data System (ADS)

    Perona, P.; Miescher, A.; Porporato, A.

    2009-04-01

    Avalanche hazard forecasting is an important issue in relation to the protection of urbanized environments, ski resorts and of ski-touring alpinists. A critical point is to predict the conditions that trigger the snow mass instability determining the onset and the size of avalanches. On steep terrains the risk of avalanches is known to be related to preceding consistent snowfall events and to subsequent changes in the local climatic conditions. Regression analysis has shown that avalanche occurrence indeed correlates to the amount of snow fallen in consecutive three snowing days and to the state of the settled snow at the ground. Moreover, since different type of avalanches may occur as a result of the interactions of different factors, the process of snow avalanche formation is inherently complex and with some degree of unpredictability. For this reason, although several models assess the risk of avalanche by accounting for all the involved processes with a great detail, a high margin of uncertainty invariably remains. In this work, we explicitly describe such an unpredictable behaviour with an intrinsic noise affecting the processes leading snow instability. Eventually, this sets the basis for a minimalist stochastic model, which allows us to investigate the avalanche dynamics and its statistical properties. We employ a continuous time process with stochastic jumps (snowfalls), deterministic decay (snowmelt and compaction) and state dependent avalanche occurrence (renewals) as a minimalist model for the determination of avalanche size and related intertime occurrence. The physics leading to avalanches is simplified to the extent where only meteorological data and terrain data are necessary to estimate avalanche danger. We explore the analytical formulation of the process and the properties of the probability density function of the avalanche process variables. We also discuss what is the probabilistic link between avalanche size and preceding snowfall event and

  19. Joint estimation of habitat dynamics and species interactions: disturbance reduces co-occurrence of non-native predators with an endangered toad

    USGS Publications Warehouse

    Miller, David A.W.; Brehme, Cheryl S.; Hines, James E.; Nichols, James D.; Fisher, Robert N.

    2012-01-01

    1. Ecologists have long been interested in the processes that determine patterns of species occurrence and co-occurrence. Potential short-comings of many existing empirical approaches that address these questions include a reliance on patterns of occurrence at a single time point, failure to account properly for imperfect detection and treating the environment as a static variable. 2. We fit detection and non-detection data collected from repeat visits using a dynamic site occupancy model that simultaneously accounts for the temporal dynamics of a focal prey species, its predators and its habitat. Our objective was to determine how disturbance and species interactions affect the co-occurrence probabilities of an endangered toad and recently introduced non-native predators in stream breeding habitats. For this, we determined statistical support for alternative processes that could affect co-occurrence frequency in the system. 3. We collected occurrence data at stream segments in two watersheds where streams were largely ephemeral and one watershed dominated by perennial streams. Co-occurrence probabilities of toads with non-native predators were related to disturbance frequency, with low co-occurrence in the ephemeral watershed and high co-occurrence in the perennial watershed. This occurred because once predators were established at a site, they were rarely lost from the site except in cases when the site dried out. Once dry sites became suitable again, toads colonized them much more rapidly than predators, creating a period of predator-free space. 4. We attribute the dynamics to a storage effect, where toads persisting outside the stream environment during periods of drought rapidly colonized sites when they become suitable again. Our results support that even in highly connected stream networks, temporal disturbance can structure frequencies with which breeding amphibians encounter non-native predators. 5. Dynamic multi-state occupancy models are a powerful tool

  20. Handbook of gas hydrate properties and occurrence

    SciTech Connect

    Kuustraa, V.A.; Hammershaimb, E.C.

    1983-12-01

    This handbook provides data on the resource potential of naturally occurring hydrates, the properties that are needed to evaluate their recovery, and their production potential. The first two chapters give data on the naturally occurring hydrate potential by reviewing published resource estimates and the known and inferred occurrences. The third and fourth chapters review the physical and thermodynamic properties of hydrates, respectively. The thermodynamic properties of hydrates that are discussed include dissociation energies and a simplified method to calculate them; phase diagrams for simple and multi-component gases; the thermal conductivity; and the kinetics of hydrate dissociation. The final chapter evaluates the net energy balance of recovering hydrates and shows that a substantial positive energy balance can theoretically be achieved. The Appendices of the Handbook summarize physical and thermodynamic properties of gases, liquids and solids that can be used in designing and evaluating recovery processes of hydrates. 158 references, 67 figures, 47 tables.

  1. Projecting Global Occurrence of Cryptococcus gattii

    PubMed Central

    Springer, Deborah J.

    2010-01-01

    Cryptococcus gattii and C. neoformans cause pulmonary and systemic cryptococcosis. Recently, C. gattii was recognized as a distinct pathogen of humans and animals. We analyzed information from 400 publications (1948–2008) to examine whether the fungus occurs globally. Known distribution of C. gattii is possibly limited because specialized reagents for differentiation from C. neoformans are not readily available and not always used, and environmental surveys are patchy. However, autochthonous reports of C. gattii cryptococcosis have now been recognized from tropical and temperate regions. An ongoing outbreak in western Canada strengthens the case that the range of the pathogen has expanded. A few studies have highlighted differences in cryptococcosis between C. gattii and C. neoformans. More than 50 tree species have yielded C. gattii especially from decayed hollows suggesting a possible ecologic niche. This pathogen merits more attention so its environmental occurrence and role in cryptococcosis can be accurately determined. PMID:20031037

  2. The occurrence of Salmonella in airline meals.

    PubMed

    Hatakka, M; Asplund, K

    1993-01-01

    The occurrence of Salmonella in airline meals was studied in 1989-1992. Samples were collected from flight kitchens in 29 countries. The material consisted of 400 cold dishes and 1,288 hot dishes as well as salads, cheese plates and deserts. Total number of samples was 2211. Salmonella spp. were isolated from 6 samples; 1 contaminated sample was a cold dish prepared in Bangkok, 1 was a hot dish prepared in Mombasa and the remaining 4 contaminated samples were hot dishes prepared within one week in Beijing. The isolated serotypes were S. ohio, S. manchester and S. braenderup. The contaminated cold dish prepared by a flight kitchen in Bangkok was found to be connected with a Salmonella outbreak which occurred in Finland in 1990. Cold airline dishes containing food of animal origin seems to be more risky as a source of Salmonella infections among airline passengers. PMID:8147292

  3. Olmsted Syndrome: Rare Occurrence in Four Siblings

    PubMed Central

    Bukharia, Atishay; Komal, Sweta; Sudhanan, V Madhu; Chaudhary, Shyam Sundar

    2016-01-01

    Olmsted syndrome is a very rare and severe cicatrizing keratoderma associated with periorificial lesion. Most cases are sporadic but familial occurrence has been also seen. Till now around 73 cases have been reported and none of the reported cases have 4 siblings affected from this disease. We are reporting cases of 4 siblings of age 30 year female, 26 year female, 20 year male and 10 year male who were born to a third degree consangueinous marriage and presented with palmoplantar keratoderma, periorificial hyperkeratosis, flexion deformity, pseudoainhum and contracture of digits. There was no cardiac involvement. Hence, the diagnosis of Olmsted syndrome was made and all four patients were non responsive to treatment which included topical corticosteroid, topical salicylic acid, systemic isotretinoin, systemic acitretin and oral zinc in child. PMID:27293270

  4. Olmsted Syndrome: Rare Occurrence in Four Siblings.

    PubMed

    Bukharia, Atishay; Komal, Sweta; Sudhanan, V Madhu; Chaudhary, Shyam Sundar

    2016-01-01

    Olmsted syndrome is a very rare and severe cicatrizing keratoderma associated with periorificial lesion. Most cases are sporadic but familial occurrence has been also seen. Till now around 73 cases have been reported and none of the reported cases have 4 siblings affected from this disease. We are reporting cases of 4 siblings of age 30 year female, 26 year female, 20 year male and 10 year male who were born to a third degree consangueinous marriage and presented with palmoplantar keratoderma, periorificial hyperkeratosis, flexion deformity, pseudoainhum and contracture of digits. There was no cardiac involvement. Hence, the diagnosis of Olmsted syndrome was made and all four patients were non responsive to treatment which included topical corticosteroid, topical salicylic acid, systemic isotretinoin, systemic acitretin and oral zinc in child. PMID:27293270

  5. Epidemic occurrence of neonatal necrotizing enterocolitis.

    PubMed

    Guinan, M; Schaberg, D; Bruhn, F W; Richardson, C J; Fox, W W

    1979-06-01

    In case-control studies of three epidemics of neonatal necrotizing enterocolitis (NEC) in three different high-risk nurseries in three states, no particular risk factor was associated with affected infants or their mothers. Epidemic cases had higher birth weights and Apgar scores and fewer perinatal difficulties than those previously reported for sporadic cases. Seven infants fed primarily breast milk were not protected against disease. Early antibiotic therapy was associated with a significantly decreased risk of disease in one outbreak. In two hospitals, affected infants who received antibiotic therapy during the first three days of life had a significantly later disease onset. The occurrence of the disease in epidemics and the decreased risk or modification of disease with antibiotic therapy support an infectious etiology for NEC. PMID:108997

  6. Occurrence of Nontuberculous Mycobacteria in Environmental Samples

    PubMed Central

    Covert, Terry C.; Rodgers, Mark R.; Reyes, Antolin L.; Stelma, Gerard N.

    1999-01-01

    Nontuberculous mycobacteria (NTM) are a major cause of opportunistic infection in immunocompromised hosts. Because there is no evidence of person-to-person transmission and NTM have been found in drinking water, the environment is considered a likely source of infection. In this study the widespread occurrence of NTM was examined in drinking water, bottled water, and ice samples. A total of 139 samples were examined for NTM by a membrane filtration culture technique followed by PCR amplification and 16S rRNA sequence determination to identify the isolates. NTM were not detected in bottled water or cisterns but were detected in 54% of the ice samples and 35% of the public drinking-water samples from 21 states. The most frequently occurring isolate was M. mucogenicum (formerly referred to as an M. chelonae-like organism). PMID:10347032

  7. Conservation priorities of Iberoamerican pig breeds and their ancestors based on microsatellite information.

    PubMed

    Cortés, O; Martinez, A M; Cañon, J; Sevane, N; Gama, L T; Ginja, C; Landi, V; Zaragoza, P; Carolino, N; Vicente, A; Sponenberg, P; Delgado, J V

    2016-07-01

    Criollo pig breeds are descendants from pigs brought to the American continent starting with Columbus second trip in 1493. Pigs currently play a key role in social economy and community cultural identity in Latin America. The aim of this study was to establish conservation priorities among a comprehensive group of Criollo pig breeds based on a set of 24 microsatellite markers and using different criteria. Spain and Portugal pig breeds, wild boar populations of different European geographic origins and commercial pig breeds were included in the analysis as potential genetic influences in the development of Criollo pig breeds. Different methods, differing in the weight given to within- and between-breed genetic variability, were used in order to estimate the contribution of each breed to global genetic diversity. As expected, the partial contribution to total heterozygosity gave high priority to Criollo pig breeds, whereas Weitzman procedures prioritized Iberian Peninsula breeds. With the combined within- and between-breed approaches, different conservation priorities were achieved. The Core Set methodologies highly prioritized Criollo pig breeds (Cr. Boliviano, Cr. Pacifico, Cr. Cubano and Cr. Guadalupe). However, weighing the between- and within-breed components with FST and 1-FST, respectively, resulted in higher contributions of Iberian breeds. In spite of the different conservation priorities according to the methodology used, other factors in addition to genetic information also need to be considered in conservation programmes, such as the economic, cultural or historical value of the breeds involved. PMID:27025169

  8. Fracture occurrence from radionuclides in the skeleton

    SciTech Connect

    Lloyd, R.D.; Taylor, G.N.; Miller, S.C.

    2000-06-01

    Because skeletal fractures were an important finding among persons contaminated with {sup 226}Ra, experience with fractures among dogs in the colony was summarized to determine the projected significance for persons contaminated with bone-seeking radionuclides. Comparison by Fisher's Exact Test of lifetime fracture occurrence in the skeletons of beagles injected as young adults suggested that for animals given {sup 226}Ra, {sup 228}Ra, {sup 228}Th, or {sup 239}Pu citrate, there was probably an excess over controls in fractures of the ribs, leg bones, spinous processes, and pelvis (os coxae) plus the mandible for dogs given {sup 226}Ra and the scapulae for dogs given {sup 228}Ra or 228 Th. Regression analysis indicated that significantly elevated fracture occurrence was especially notable at the higher radiation doses, at about 50 Gy average skeletal dose for {sup 239}Pu, 140 Gy for {sup 226}Ra, about 40 Gy for {sup 228}Ra, and more than 15 Gy for {sup 228}Th. The average number of fractures per dog was significantly elevated over that noted in controls for the highest radiation doses of {sup 239}Pu and {sup 226}Ra and for the higher doses of {sup 228}Ra and {sup 228}Th. For those dogs given {sup 90}Sr citrate, there was virtually no important difference from control beagles not given radionuclides, even at group mean cumulative skeletal radiation doses up to 101 Gy. Because of a large proportion of dogs with fractures that died with bone malignancy (even at dosage levels lower than those exhibiting an excess average number of fractures per dog), they conclude that fracture would not be an important endpoint at lower levels of plutonium contamination in humans such as would be expected to occur from occupational or environmental exposure.

  9. Occurrence of transformation products in the environment

    USGS Publications Warehouse

    Kolpin, D.W.; Battaglin, W.A.; Conn, K.E.; Furlong, E.T.; Glassmeyer, S.T.; Kalkhoff, S.J.; Meyer, M.T.; Schnoebelen, D.J.

    2009-01-01

    Historically, most environmental occurrence research has focused on the parent compounds of organic contaminants. Research, however, has documented that the environmental transport of chemicals, such as pesticides and emerging contaminants, are substantially underestimated if transformation products are not considered. Although most examples described herein were drawn from research conducted by the U.S. Geological Survey, such results are generally reflective of those found in other parts of the world. Results from a study of 51 streams in the Midwestern United States found that transformation products were seven of the ten most frequently detected pesticide compounds in late spring runoff (after application of pre-emergent herbicides), and nine of the ten most frequently detected compounds in fall season runoff (during and after harvest). In fact, 70% of the total herbicide concentration in water from the Mississippi River Basin was from transformation products. Results from a study of 86 municipal wells in Iowa found the frequency of detection increased from 17%, when pesticide parent compounds were considered, to 53%, when both parents and transformation products were considered. Transformation products were 12 of the 15 most frequently detected compounds for this groundwater study. Although studies on transformation products of synthetic organic compounds other than pesticides are not as common, wastewater treatment plant discharges have repeatedly been shown to contribute such transformation products to streams. In addition, select detergent transformation products have been commonly found in solid waste in the 1000's mg/kg. These findings and many others document that transformation products must be considered to fully assess the potential environmental occurrence of chemical contaminants and their transport and fate in various compartments of the hydrologic system. ?? 2008 Springer-Verlag Berlin Heidelberg.

  10. Opinions of veterinarians regarding aggression in different breeds of dogs.

    PubMed

    Stafford, K J

    1996-08-01

    Aggression in 108 dog breeds and six crosses was ranked by 185 members of the Companion Animal Society of the New Zealand Veterinary Association. The Rottweiler and German Shepherd were categorised as extremely aggressive and the Akita, Basengi, Chihuahua (long-coated and short-coated), Chow Chow, Cocker Spaniel, Shar pei and Welsh Corgi (Cardigan and Pembroke) were classified as very aggressive. A chi-squared test of data from the twenty most popular breeds showed that significant differences were perceived between the breeds. Cocker Spaniels, Pembroke Welsh Corgis, German Shepherds and Rottweilers were more aggressive than Staffordshire Bull Terriers, Border Collies and Doberman Pinchers, which were more aggressive than Cavalier King Charles Spaniels, Bichon Frise, English Springer Spaniels, German Shorthaired Pointers, Weimaraners, Labrador Retrievers, Golden Retrievers, Newfoundlands, Dalmatians, Boxers, Bulldogs, Bull Mastiffs and Rough Collies. PMID:16031916

  11. Opportunities for Products of New Plant Breeding Techniques.

    PubMed

    Schaart, Jan G; van de Wiel, Clemens C M; Lotz, Lambertus A P; Smulders, Marinus J M

    2016-05-01

    Various new plant breeding techniques (NPBT) have a similar aim, namely to produce improved crop varieties that are difficult to obtain through traditional breeding methods. Here, we review the opportunities for products created using NPBTs. We categorize products of these NPBTs into three product classes with a different degree of genetic modification. For each product class, recent examples are described to illustrate the potential for breeding new crops with improved traits. Finally, we touch upon the future applications of these methods, such as cisgenic potato genotypes in which specific combinations of Phytophthora infestans resistance genes have been stacked for use in durable cultivation, or the creation of new disease resistances by knocking out or removing S-genes using genome-editing techniques. PMID:26654659

  12. Evidence for frequent incest in a cooperatively breeding mammal.

    PubMed

    Nichols, H J; Cant, M A; Hoffman, J I; Sanderson, J L

    2014-12-01

    As breeding between relatives often results in inbreeding depression, inbreeding avoidance is widespread in the animal kingdom. However, inbreeding avoidance may entail fitness costs. For example, dispersal away from relatives may reduce survival. How these conflicting selection pressures are resolved is challenging to investigate, but theoretical models predict that inbreeding should occur frequently in some systems. Despite this, few studies have found evidence of regular incest in mammals, even in social species where relatives are spatio-temporally clustered and opportunities for inbreeding frequently arise. We used genetic parentage assignments together with relatedness data to quantify inbreeding rates in a wild population of banded mongooses, a cooperatively breeding carnivore. We show that females regularly conceive to close relatives, including fathers and brothers. We suggest that the costs of inbreeding avoidance may sometimes outweigh the benefits, even in cooperatively breeding species where strong within-group incest avoidance is considered to be the norm. PMID:25540153

  13. Evidence for frequent incest in a cooperatively breeding mammal

    PubMed Central

    Nichols, H. J.; Cant, M. A.; Hoffman, J. I.; Sanderson, J. L.

    2014-01-01

    As breeding between relatives often results in inbreeding depression, inbreeding avoidance is widespread in the animal kingdom. However, inbreeding avoidance may entail fitness costs. For example, dispersal away from relatives may reduce survival. How these conflicting selection pressures are resolved is challenging to investigate, but theoretical models predict that inbreeding should occur frequently in some systems. Despite this, few studies have found evidence of regular incest in mammals, even in social species where relatives are spatio-temporally clustered and opportunities for inbreeding frequently arise. We used genetic parentage assignments together with relatedness data to quantify inbreeding rates in a wild population of banded mongooses, a cooperatively breeding carnivore. We show that females regularly conceive to close relatives, including fathers and brothers. We suggest that the costs of inbreeding avoidance may sometimes outweigh the benefits, even in cooperatively breeding species where strong within-group incest avoidance is considered to be the norm. PMID:25540153

  14. On the role of mid-infrared predicted phenotypes in fertility and health dairy breeding programs.

    PubMed

    Bastin, C; Théron, L; Lainé, A; Gengler, N

    2016-05-01

    Fertility and health traits are of prime importance in dairy breeding programs. However, these traits are generally complex, difficult to record, and lowly heritable (<0.10), thereby hampering genetic improvement in disease resistance and fertility. Hence, indicators are useful in the prediction of genetic merit for fertility and health traits as long as they are easier to measure than direct fitness traits, heritable, and genetically correlated. Considering that changes in (fine) milk composition over a lactation reflect the physiological status of the cow, mid-infrared (MIR) analysis of milk opens the door to a wide range of potential indicator traits of fertility and health. Previous studies investigated the phenotypic and genetic relationships between fertility and MIR-predicted phenotypes, most being related to negative postpartum energy balance and body fat mobilization (e.g., fat:protein ratio, urea, fatty acids profile). Results showed that a combination of various fatty acid traits (e.g., C18:1 cis-9 and C10:0) could be used to improve fertility. Furthermore, occurrence of (sub)clinical ketosis has been related to milk-based phenotypes such as fat:protein ratio, fatty acids, and ketone bodies. Hence, MIR-predicted acetone and β-hydroxybutyrate contents in milk could be useful for breeding cows less susceptible to ketosis. Although studies investigating the genetic association among mastitis and MIR-predicted phenotypes are scarce, a wide range of traits, potentially predicted by MIR spectrometry, are worthy of consideration. These include traits related to the disease response of the cow (e.g., lactoferrin), reduced secretory activity (e.g., casein), and the alteration of the blood-milk barrier (e.g., minerals). Moreover, direct MIR prediction of fertility and health traits should be further considered. To conclude, MIR-predicted phenotypes have a role to play in the improvement of dairy cow fertility and health. However, further studies are warranted to

  15. Evolutionary routes to non-kin cooperative breeding in birds

    PubMed Central

    Riehl, Christina

    2013-01-01

    Cooperatively breeding animals live in social groups in which some individuals help to raise the offspring of others, often at the expense of their own reproduction. Kin selection—when individuals increase their inclusive fitness by aiding genetic relatives—is a powerful explanation for the evolution of cooperative breeding, particularly because most groups consist of family members. However, recent molecular studies have revealed that many cooperative groups also contain unrelated immigrants, and the processes responsible for the formation and maintenance of non-kin coalitions are receiving increasing attention. Here, I provide the first systematic review of group structure for all 213 species of cooperatively breeding birds for which data are available. Although the majority of species (55%) nest in nuclear family groups, cooperative breeding by unrelated individuals is more common than previously recognized: 30% nest in mixed groups of relatives and non-relatives, and 15% nest primarily with non-relatives. Obligate cooperative breeders are far more likely to breed with non-kin than are facultative cooperators, indicating that when constraints on independent breeding are sufficiently severe, the direct benefits of group membership can substitute for potential kin-selected benefits. I review three patterns of dispersal that give rise to social groups with low genetic relatedness, and I discuss the selective pressures that favour the formation of such groups. Although kin selection has undoubtedly been crucial to the origin of most avian social systems, direct benefits have subsequently come to play a predominant role in some societies, allowing cooperation to persist despite low genetic relatedness. PMID:24132311

  16. Limitations of captive breeding in endangered species recovery

    USGS Publications Warehouse

    Snyder, N.F.R.; Derrickson, S.R.; Beissenger, S.R.; Wiley, J.W.; Smith, T.B.; Toone, W.D.; Miller, B.

    1996-01-01

    The use of captive breeding in species recovery has grown enormously in recent years, but without a concurrent growth in appreciation of its limitations. Problems with (1) establishing self-sufficient captive populations, (2) poor success in reintroductions, (3.) high costs, (4) domestication, (5) preemption of other recovery techniques, (6) disease outbreaks, and (7) maintaining administrative continuity have all been significant. The technique has often been invoked prematurely and should not normally be employed before a careful field evaluation of costs and benefits of all conservation alternatives has been accomplished and a determination made that captive breeding is essential for species survival. Merely demonstrating that a species population is declining or bas fallen below what may be a minimum viable size does not constitute enough analysis to justify captive breeding as a recovery measure. Captive breeding should be reviewed as a last resort in species recovery and not a prophylactic or long-term solution because of the inexorable genetic and phenotypic changes that occur in captive environments. Captive breeding can play a crucial role in recovery of some species for witch effective alternatives are unavailable in the short term. However, it should not displace habitat and ecosystem protection nor should it be invoked in the absence of comprehensive efforts to maintain or restore populations in wild habitats. Zoological institutions with captive breeding programs should operate under carefully defined conditions of disease prevention and genetic/behavioral management. More important, these institutions should help preserve biodiversity through their capacities for public education, professional training, research, and support of in situ conservation efforts.

  17. Participatory definition of breeding objectives for sheep breeds under pastoral systems--the case of Red Maasai and Dorper sheep in Kenya.

    PubMed

    König, Emelie Zonabend; Mirkena, Tadele; Strandberg, Erling; Audho, James; Ojango, Julie; Malmfors, Birgitta; Okeyo, Ally Mwai; Philipsson, Jan

    2016-01-01

    Crossing local breeds with exotic breeds may be an option for increased livestock productivity. However, there is a risk for endangerment of the local breeds. One such case is in Kenya where the imported Dorper breed is used for crossbreeding with Red Maasai sheep. The aim of this study was to investigate farmers' trait preferences as a basis for determination of breeding objectives for Red Maasai and Dorper sheep at two sites, Amboseli and Isinya, in Kenya. Within their own flock, each farmer identified three ewes representing the best, average and poorest within each breed group: Red Maasai, Dorper and Crosses. Farmers gave reasons for their ranking. Body measurements and weights were also taken. At the harshest site, Amboseli, differences between breed groups in body weight were small and breeds were equally preferred. In Isinya, where environmental conditions are better and farmers are more market oriented, Dorper and Crosses had significantly higher body weights and market prices and were thus preferred by the farmers. Red Maasai were preferred for their maternal and adaptive traits. Breeding objectives should emphasize growth traits and milk production in both breeds at both sites. Body condition needs to be specifically considered in the breeding objectives for sheep in Amboseli, whereas adaptive traits need to be generally emphasized in Dorper. PMID:26374208

  18. Monte Carlo beam capture and charge breeding simulation

    SciTech Connect

    Kim, J.S.; Liu, C.; Edgell, D.H.; Pardo, R.

    2006-03-15

    A full six-dimensional (6D) phase space Monte Carlo beam capture charge-breeding simulation code examines the beam capture processes of singly charged ion beams injected to an electron cyclotron resonance (ECR) charge breeder from entry to exit. The code traces injected beam ions in an ECR ion source (ECRIS) plasma including Coulomb collisions, ionization, and charge exchange. The background ECRIS plasma is modeled within the current frame work of the generalized ECR ion source model. A simple sample case of an oxygen background plasma with an injected Ar +1 ion beam produces lower charge breeding efficiencies than experimentally obtained. Possible reasons for discrepancies are discussed.

  19. Random drift and large shifts in popularity of dog breeds.

    PubMed Central

    Herzog, Harold A; Bentley, R Alexander; Hahn, Matthew W

    2004-01-01

    A simple model of random copying among individuals, similar to the population genetic model of random drift, can predict the variability in the popularity of cultural variants. Here, we show that random drift also explains a biologically relevant cultural phenomenon--changes in the distributions of popularity of dog breeds in the United States in each of the past 50 years. There are, however, interesting deviations from the model that involve large changes in the popularity of certain breeds. By identifying meaningful departures from our null model, we show how it can serve as a foundation for studying culture change quantitatively, using the tools of population genetics. PMID:15504016

  20. A genome-wide association study of malting quality across eight U.S. barley breeding programs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study leverages the breeding data of 1,862 breeding lines evaluated in 97 field trials for genome-wide association study of malting quality traits in barley. The breeding lines were six-row and two-row barley advanced breeding lines from eight barley breeding populations established at six pub...

  1. Fashion vs. function in cultural evolution: the case of dog breed popularity.

    PubMed

    Ghirlanda, Stefano; Acerbi, Alberto; Herzog, Harold; Serpell, James A

    2013-01-01

    We investigate the relationship between characteristics of dog breeds and their popularity between years 1926 and 2005. We consider breed health, longevity, and behavioral qualities such as aggressiveness, trainability, and fearfulness. We show that a breed's overall popularity, fluctuations in popularity, and rates of increase and decrease around popularity peaks show typically no correlation with these breed characteristics. One exception is the finding that more popular breeds tend to suffer from more inherited disorders. Our results support the hypothesis that dog breed popularity has been primarily determined by fashion rather than function. PMID:24040341

  2. Fashion vs. Function in Cultural Evolution: The Case of Dog Breed Popularity

    PubMed Central

    Ghirlanda, Stefano; Acerbi, Alberto; Herzog, Harold; Serpell, James A.

    2013-01-01

    We investigate the relationship between characteristics of dog breeds and their popularity between years 1926 and 2005. We consider breed health, longevity, and behavioral qualities such as aggressiveness, trainability, and fearfulness. We show that a breed's overall popularity, fluctuations in popularity, and rates of increase and decrease around popularity peaks show typically no correlation with these breed characteristics. One exception is the finding that more popular breeds tend to suffer from more inherited disorders. Our results support the hypothesis that dog breed popularity has been primarily determined by fashion rather than function. PMID:24040341

  3. The influence of eastern North American autumnal migrant monarch butterflies (Danaus plexippus L.) on continuously breeding resident monarch populations in southern Florida.

    PubMed

    Knight, Amy; Brower, Lincoln P

    2009-07-01

    In Florida, the eastern North American population of the monarch butterfly exhibits geographic variability in population structure and dynamics. This includes the occurrence of migrants throughout the peninsula during the autumnal migration, occasional overwintering clusters that form along the Gulf Coast, remigrants from Mexico that breed in north-central Florida during the spring, and what have been assumed to be year-round, resident breeding populations in southern Florida. The work reported here focused on two monarch populations west of Miami and addressed four questions: Are there permanent resident populations of monarchs in southern Florida? Do these breed continuously throughout the year? Do they receive northern monarchs moving south during the autumn migration? Do they receive overwintered monarchs returning via Cuba or the Yucatan during the spring remigration from the Mexican overwintering area? Monthly collections and counts of spermatophores in the bursa copulatrices of females established that a resident population of continuously breeding monarchs exists year-round in southern Florida. It was determined through cardenolide fingerprinting that most of the butterflies had bred on the local southern Florida milkweed species, Asclepias curassavica. During the autumn migration period, however, some monarchs had fed on the northern milkweed, Asclepias syriaca. It appears that instead of migrating to Mexico, these individuals travel south through peninsular Florida, break diapause, mate with and become incorporated into the resident breeding populations. None of the monarchs captured in spring had the A. syriaca cardenolide fingerprint, which is evidence against the southern Florida populations receiving overwintered remigrants from Cuba, Central America or Mexico. PMID:19579046

  4. Wetland occupancy of pond-breeding amphibians in Yosemite National Park, USA

    USGS Publications Warehouse

    Fellers, Gary M.; Kleeman, Patrick M.; Miller, David A.W.

    2015-01-01

    We estimated wetland occupancy and population trends for three species of pond-breeding anurans in Yosemite National Park from 2007-2011. We used a double survey technique in which two observers independently surveyed each site on the same day. Double surveys allowed us to calculate detectability for the three most common anurans within the park: Rana sierrae, Anaxyrus canorus, and Pseudacris regilla. Annual estimates of detectability were generally high; mean detectability ranged from 73.7% + 0.6 (SE) for any life history stage of A. canorus to 86.7% + 0.7 for sites with P. regilla reproduction (eggs or larvae present). Detectability was most variable for Anaxyrus canorus, which ranged from 45.9% to 99.7%. The probability of occupancy for R. sierrae was highest in larger, low-elevation wetlands that lacked fish. Anaxyrus canorus were more common in shallow high-elevation ponds; their occurrence was minimally impacted by the presence of fish. Finally, occurrence of P. regilla was largely unrelated to wetland size and elevation, but like R. sierrae, they were less likely to occupy sites with fi sh. Occupancy showed no trend over the five years of our study for R. sierrae or A. canorus when considering either sites with any life stage or only sites with reproduction. However, P. regilla showed a modest downward trend for sites with any life stage and sites with reproduction. Our results for R. sierrae run counter to expectations given recent concern about the decline of this species, while our findings for P. regilla raise concerns for this widespread and generally common species.

  5. Drift across the Atlantic: genetic differentiation and population structure in Brazilian and Portuguese native goat breeds.

    PubMed

    Ribeiro, M N; Bruno-de-Sousa, C; Martinez-Martinez, A; Ginja, C; Menezes, M P C; Pimenta-Filho, E C; Delgado, J V; Gama, L T

    2012-02-01

    Brazilian goat breeds are believed to derive mainly from animals brought by Portuguese settlers since the 16th century. We used microsatellite markers in a sample of 436 animals to study genetic variability and differentiation of the six Portuguese (PT) and six Brazilian (BR) goat breeds currently recognized in the two countries. These breeds were also compared with an outgroup represented by a sample of Alpine (ALP) goats. The effective number of alleles and allelic richness were slightly higher in PT than in BR breeds. The global F(ST) was nearly 0.11 when PT and BR breeds were considered, with a mean pairwise F(ST) of about 0.03 among PT breeds, 0.07 among BR breeds and 0.15 between PT and BR breeds. The dendrogram illustrating relationships between populations and the correspondence analysis indicate the existence of two very distinct clusters, corresponding to the countries of origin of the breeds studied, which are nearly equidistant from the Alpine outgroup. The analysis with structure confirmed the separation between PT and BR breeds but suggests that some BR breeds, especially Graúna and Canindé, may share a common ancestry with PT breeds. The divergence observed between PT and BR breeds may result from founder effects and genetic drift but could also reflect the introduction in Brazil of goats originating from other regions, e.g., West Africa. PMID:22225587

  6. Association Between Benzodiazepine Use and Epilepsy Occurrence

    PubMed Central

    Harnod, Tomor; Wang, Yu-Chiao; Kao, Chia-Hung

    2015-01-01

    Abstract We conducted a retrospective case–control study to evaluate the association between the risk of benzodiazepine (BZD) use and epilepsy occurrence by using data from the Taiwan National Health Insurance Research Database. We recruited 1065 participants who ages 20 years or older and newly diagnosed with epilepsy (International Classification of Diseases, Ninth Revision, Clinical Modification 345) between 2004 and 2011 and assigned them to the epilepsy group. We subsequently frequency-matched them with participants in a control group (n = 4260) according to sex, age, and index year at a 1:4 ratio. A logistic regression model was employed to calculate the odds ratio (OR) for association of epilepsy with BZD exposure. Multivariate logistic regression was conducted to estimate the dose–response relationship between BZD levels and epilepsy risk. The adjusted OR (aOR) for the association of epilepsy with BZD exposure was 2.02 (95% confidence interval [CI] = 1.68–2.42). The aOR for an average BZD dose increased to 1.26 for the participants on <0.01 defined daily dose (DDD), and increased to 4.32 for those on ≥1.50 DDD. On average, when the DDD of BZD exposure increased by 100 units, the epilepsy risk increase by 1.03-fold (95% CI = 1.01–1.04, P = 0.003). The annual BZD exposure day ranges were significantly associated with epilepsy (2–7 days: aOR = 1.67; 8–35 days: aOR = 3.16; and ≥35 days: aOR = 5.60). Whenever the annual BZD exposure increased by 30 days, the risk of epilepsy notably increased by 1.03-fold (95% CI = 1.01–1.04, P < 0.001). In addition, users who quit BZD for more than 6 months still exhibited a higher risk of epilepsy than did the non-BZD users. A considerable increase in epilepsy occurrence was observed in ones with BZD use, particularly in those with prolonged use, multiple exposure, and high-dose consumption. PMID:26376408

  7. The use of local indicators of spatial association to improve LiDAR-derived predictions of potential amphibian breeding ponds

    USGS Publications Warehouse

    Julian, J.T.; Young, J.A.; Jones, J.W.; Snyder, C.D.; Wright, C.W.

    2009-01-01

    We examined whether spatially explicit information improved models that use LiDAR return signal intensity to discriminate in-pond habitat from terrestrial habitat at 24 amphibian breeding ponds. The addition of Local Indicators of Spatial Association (LISA) to LiDAR return intensity data significantly improved predictive models at all ponds, reduced residual error by as much as 74%, and appeared to improve models by reducing classification errors associated with types of in-pond vegetation. We conclude that LISA statistics can help maximize the information content that can be extracted from time resolved LiDAR return data in models that predict the occurrence of small, seasonal ponds. ?? Springer-Verlag 2008.

  8. Genomic prediction in CIMMYT maize and wheat breeding programs

    PubMed Central

    Crossa, J; Pérez, P; Hickey, J; Burgueño, J; Ornella, L; Cerón-Rojas, J; Zhang, X; Dreisigacker, S; Babu, R; Li, Y; Bonnett, D; Mathews, K

    2014-01-01

    Genomic selection (GS) has been implemented in animal and plant species, and is regarded as a useful tool for accelerating genetic gains. Varying levels of genomic prediction accuracy have been obtained in plants, depending on the prediction problem assessed and on several other factors, such as trait heritability, the relationship between the individuals to be predicted and those used to train the models for prediction, number of markers, sample size and genotype × environment interaction (GE). The main objective of this article is to describe the results of genomic prediction in International Maize and Wheat Improvement Center's (CIMMYT's) maize and wheat breeding programs, from the initial assessment of the predictive ability of different models using pedigree and marker information to the present, when methods for implementing GS in practical global maize and wheat breeding programs are being studied and investigated. Results show that pedigree (population structure) accounts for a sizeable proportion of the prediction accuracy when a global population is the prediction problem to be assessed. However, when the prediction uses unrelated populations to train the prediction equations, prediction accuracy becomes negligible. When genomic prediction includes modeling GE, an increase in prediction accuracy can be achieved by borrowing information from correlated environments. Several questions on how to incorporate GS into CIMMYT's maize and wheat programs remain unanswered and subject to further investigation, for example, prediction within and between related bi-parental crosses. Further research on the quantification of breeding value components for GS in plant breeding populations is required. PMID:23572121

  9. Interspecific synchrony of seabird population growth rate and breeding success

    PubMed Central

    Robinson, James P W; Dornelas, Maria; Ojanguren, Alfredo F

    2013-01-01

    Environmental variability can destabilize communities by causing correlated interspecific fluctuations that weaken the portfolio effect, yet evidence of such a mechanism is rare in natural systems. Here, we ask whether the population dynamics of similar sympatric species of a seabird breeding community are synchronized, and if these species have similar exceptional responses to environmental variation. We used a 24-year time series of the breeding success and population growth rate of a marine top predator species group to assess the degree of synchrony between species demography. We then developed a novel method to examine the species group – all species combined – response to environmental variability, in particular, whether multiple species experience similar, pronounced fluctuations in their demography. Multiple species were positively correlated in breeding success and growth rate. Evidence of “exceptional” years was found, where the species group experienced pronounced fluctuations in their demography. The synchronous response of the species group was negatively correlated with winter sea surface temperature of the preceding year for both growth rate and breeding success. We present evidence for synchronous, exceptional responses of a species group that are driven by environmental variation. Such species covariation destabilizes communities by reducing the portfolio effect, and such exceptional responses may increase the risk of a state change in this community. Our understanding of the future responses to environmental change requires an increased focus on the short-term fluctuations in demography that are driven by extreme environmental variability. PMID:23919147

  10. Inter- and Intra- Specific Hybrid Breeding in Crape Mrytle (Lagerstroemia)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The long term goal of these breeding programs is to develop new crape myrtle cultivar(s) with broad adaptation to heat, drought, cold tolerance, disease and insect resistance, and unique/novel flower colors. The objectives of this long-term study are 1) to develop new germplasm with unique horticult...

  11. 50 CFR 15.24 - Permits for cooperative breeding.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.24 Permits...: (1) A description of the exotic bird(s) to be imported, including: (i) The common and scientific..., at the time of the application, the exotic bird is still in the wild, has already been removed...

  12. Canine gastrointestinal physiology: Breeds variations that can influence drug absorption.

    PubMed

    Oswald, Hayley; Sharkey, Michele; Pade, Devendra; Martinez, Marilyn N

    2015-11-01

    Although all dogs belong to Canis lupus familiaris, the physiological diversity resulting from selective breeding can lead to wide interbreed variability in drug pharmacokinetics (PK) or in oral drug product performance. It is important to understand this diversity in order to predict the impact of drug product formulation attributes on in vivo dissolution and absorption characteristics across the canine population when the dog represents the targeted patient population. Based upon published information, this review addresses breed differences in gastrointestinal (GI) physiology and discusses the in vivo implications of these differences. In addition to the importance of such information for understanding the variability that may exist in the performance of oral dosage forms in dogs for the purpose of developing canine therapeutics, an appreciation of breed differences in GI physiology can improve our prediction of oral drug formulation performance when we extrapolate bioavailability results from the dog to the humans, and vice versa. In this literature review, we examine reports of breed associated diversity in GI anatomy and morphology, gastric emptying time (GET), oro-cecal transit time (OCTT), small intestinal transit time (SITT), large intestinal transit time (LITT), intestinal permeability, sodium/potassium fecal concentrations, intestinal flora, and fecal moisture content. PMID:26409436

  13. Evaluating strawberry breeding selections for post-harvest fruit decay

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The annual replicated yield assessments for the USDA-ARS strawberry breeding effort at Beltsville, MD, 2007 and 2008, were used to develop a method of assessing each genotype’s post-harvest decay. Detectability of statistical differences between genotypes was improved by treating harvest × plot comb...

  14. Integrating genomics and plant breeding: whither the breeders?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant breeding has been practiced >5,000 years as an art and >100 years as a science. Selection provides the means where populations are improved for product, such as yield or composition, or for crop protection, such as pest and stress resistance. Such activities have not required use of genomic te...

  15. Binucleation to breed new plant species adaptable to their environments

    PubMed Central

    Moustafa, Khaled

    2015-01-01

    Classical plant breeding approaches may fall short to breed new plant species of high environmental and ecological interests. Biotechnological and genetic manipulations, on the other hand, may hold more effective capabilities to circumvent the limitations of sexual incompatibility and conventional breeding programs. Given that plant cells encompass multiple copies of organellar genomes (mitochondrial and plastidial genomes), an important question could be raised about whether an artificial attempt to duplicate the nuclear genome might also be conceivable through a binucleation approach (generating plant cells with 2 nuclei from 2 different plant species) for potential production of new polyploidies that would characterize new plant species. Since the complexities of plant genomes are the result of multiple genome duplications, an artificial binucleation approach would thus be of some interest to eventually varying plant genomes and producing new polyploidy from related or distal plant species. Here, I discuss the potentiality of such an approach to engineer binucleated plant cells as a germ of new plant species to fulfill some environmental applications such as increasing the biodiversity and breeding new species adaptable to harsh environmental stresses and increasing green surfaces to reduce atmospheric pollutions in arid lands with poor vegetation. PMID:26322577

  16. Ectoparasitism shortens the breeding season in a colonial bird.

    PubMed

    Brown, Charles R; Brown, Mary Bomberger

    2015-02-01

    When blood-feeding parasites increase seasonally, their deleterious effects may prevent some host species, especially those living in large groups where parasites are numerous, from reproducing later in the summer. Yet the role of parasites in regulating the length of a host's breeding season-and thus the host's opportunity for multiple brooding-has not been systematically investigated. The highly colonial cliff swallow (Petrochelidon pyrrhonota), a temperate-latitude migratory songbird in the western Great Plains, USA, typically has a relatively short (eight to nine week) breeding season, with birds rarely nesting late in the summer. Colonies at which ectoparasitic swallow bugs (Oeciacus vicarius) were experimentally removed by fumigation were over 45 times more likely to have birds undertake a second round of nesting than were colonies exposed to parasites. Late nesting approximately doubled the length of the breeding season, with some birds raising two broods. Over a 27 year period the percentage of birds engaging in late nesting each year increased at a colony site where parasites were removed annually. This trend could not be explained by changes in group size, climate or nesting phenology during the study. The results suggest that ectoparasitism shortens the cliff swallow's breeding season and probably prevents many individuals from multiple brooding. When this constraint is removed, selection may rapidly favour late nesting. PMID:26064606

  17. Selection and Breeding of Plant Cultivars to Minimize Cadmium Accumulation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Natural variation occurs in the uptake and distribution of essential and nonessential trace elements among crop species and among cultivars within species. Such variation can be responsible for trace element deficiencies and toxicities, which in turn can affect the quality of food. Plant breeding ...

  18. The origin and genetic diversity of Chinese native chicken breeds.

    PubMed

    Niu, Dong; Fu, Yan; Luo, Jing; Ruan, Hui; Yu, Xu-Ping; Chen, Gong; Zhang, Ya-Ping

    2002-06-01

    The first 539 bases of mitochondrial DNA D-loop region of six Chinese native chicken breeds (Gallus gallus domesticus) were sequenced and compared to those of the red junglefowl (Gallus gallus), the gray junglefowl (Gallus sonneratii), the green junglefowl (Gallus varius) and Lafayette's junglefowl (Gallus lafayettei) reported in GenBank, and the phylogenetic trees for the chickens were constructed based on the D-loop sequences. The results showed that the four species of the genus Gallus had great differences among each other the G. g. domesticus was closest to the red junglefowl in Thailand and its adjacent regions, suggesting the Chinese domestic fowl probably originatedfrom the red junglefowl in these regions. The two subspecies of Thailand, G. g. gallus and G. g. spadiceus, should belong to one subspecies because of their resemblance. In the case of native breeds, there existed a great difference between the egg breeds and general purpose breeds, which suggested different maternal origins of the two types. PMID:12137331

  19. Assessing genomic selection prediction accuracy in a dynamic barley breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genomic selection is a method to improve quantitative traits in crops and livestock by estimating breeding values of selection candidates using phenotype and genome-wide marker data sets. Prediction accuracy has been evaluated through simulation and cross-validation, however validation based on prog...

  20. Breeding FHB-resistant soft winter wheat: progress and prospects

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soft winter wheat (Triticum aestivum L.) breeding programs in the US have used two general approaches to developing FHB-resistant cultivars: 1) incorporation of Fhb1 plus other minor QTL from Asian wheat cultivars and their derivatives and 2) reliance on resistance native to the soft winter wheat ge...

  1. Efficient estimation of breeding values from dense genomic data

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genomic, phenotypic, and pedigree data can be combined to produce estimated breeding values (EBV) with higher reliability. If coefficient matrix Z includes genotypes for many loci and marker effects (u) are normally distributed with equal variance at each, estimation of u by mixed model equations or...

  2. Admixture and linkage disequilibrium analysis of meat goat breeds

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding the population structure and variation within the genome will assist with efforts to make genetic gains for meat goat production. A recently developed Illumina Goat 50K SNP panel containing 52,295 SNP loci was created primarily from SNPs identified in European dairy goat breeds and Asi...

  3. Genomics for greater efficiency in pigeonpea hybrid breeding

    PubMed Central

    Saxena, Rachit K.; Saxena, K. B.; Pazhamala, Lekha T.; Patel, Kishan; Parupalli, Swathi; Sameerkumar, C. V.; Varshney, Rajeev K.

    2015-01-01

    Cytoplasmic genic male sterility (CGMS) based hybrid technology has demonstrated its immense potential in increasing the productivity of various crops, including pigeonpea. This technology has shown promise for breaking the long-standing yield stagnation in pigeonpea. There are difficulties in commercial hybrid seed production due to non-availability of field-oriented technologies such as time-bound assessment of genetic purity of hybrid seeds. Besides this, there are other routine breeding activities which are labor oriented and need more resources. These include breeding and maintenance of new fertility restorers and maintainer lines, diversification of cytoplasm, and incorporation of biotic and abiotic stress resistances. The recent progress in genomics research could accelerate the existing traditional efforts to strengthen the hybrid breeding technology. Marker based seed purity assessment, identification of heterotic groups; selection of new fertility restorers are few areas which have already been initiated. In this paper efforts have been made to identify critical areas and opportunities where genomics can play a leading role and assist breeders in accelerating various activities related to breeding and commercialization of pigeonpea hybrids. PMID:26483810

  4. The USDA/ARS Table Grape Breeding Program

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDA/ARS table grape breeding program is developing: 1) a series of seedless table grape cultivars with naturally large berries, early to late maturity, and red, white or black fruit; 2) powdery mildew resistant table grape cultivars; and 3) Pierce’s Disease resistant table grape cultivars. Fif...

  5. Development of male-sterile lines for breeding hybrid rice

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rice is a self-pollinated crop that depends on male-sterility for F1 hybrid seed production. As an alternative to accessing existing male-sterile lines from other hybrid breeding programs, the program in Arkansas has created its own novel male-sterile sources. These were developed out of germplasm...

  6. Comparison and correlation analysis of different Swine breeds meat quality.

    PubMed

    Li, Y X; Cabling, M M; Kang, H S; Kim, T S; Yeom, S C; Sohn, Y G; Kim, S H; Nam, K C; Seo, K S

    2013-07-01

    This study was performed to determine the influence of pig breed and gender on the ultimate pH and physicochemical properties of pork. The correlations between pH and pork quality traits directly related to carcass grade, and consumer's preference were also evaluated. The pH and meat grading scores for cold carcasses of 215 purebred pigs (Duroc, Landrace, and Yorkshire) from four different farms were obtained. Meat quality parameters of the pork loin were analyzed. Duroc and female animals were more affected compared to other breeds and male pigs. Duroc animals had the highest ultimate pH, carcass back fat thickness, marbling scores, yellowness, and fat content (p<0.05). Landrace pigs had the highest color lightness and cooking loss values (p<0.05). Among all trait parameters, marbling scores showed the highest significant differences when evaluating the impact of breed and gender on meat quality characteristics (p<0.001). Ultimate pH was positively correlated with carcass weight (0.20), back fat thickness (0.19), marbling score (0.17), and color score (0.16) while negatively correlated with cooking loss (-0.24) and shear force (-0.20). Therefore, pork samples with lower ultimate pH had lower cooking loss, higher lightness, and higher shear force values irrespective of breed. PMID:25049866

  7. Comparison and Correlation Analysis of Different Swine Breeds Meat Quality

    PubMed Central

    Li, Y. X.; Cabling, M. M.; Kang, H. S.; Kim, T. S.; Yeom, S. C.; Sohn, Y. G.; Kim, S. H; Nam, K. C.; Seo, K. S.

    2013-01-01

    This study was performed to determine the influence of pig breed and gender on the ultimate pH and physicochemical properties of pork. The correlations between pH and pork quality traits directly related to carcass grade, and consumer’s preference were also evaluated. The pH and meat grading scores for cold carcasses of 215 purebred pigs (Duroc, Landrace, and Yorkshire) from four different farms were obtained. Meat quality parameters of the pork loin were analyzed. Duroc and female animals were more affected compared to other breeds and male pigs. Duroc animals had the highest ultimate pH, carcass back fat thickness, marbling scores, yellowness, and fat content (p<0.05). Landrace pigs had the highest color lightness and cooking loss values (p<0.05). Among all trait parameters, marbling scores showed the highest significant differences when evaluating the impact of breed and gender on meat quality characteristics (p<0.001). Ultimate pH was positively correlated with carcass weight (0.20), back fat thickness (0.19), marbling score (0.17), and color score (0.16) while negatively correlated with cooking loss (−0.24) and shear force (−0.20). Therefore, pork samples with lower ultimate pH had lower cooking loss, higher lightness, and higher shear force values irrespective of breed. PMID:25049866

  8. Developing the genomic infrastructure for breeding black raspberry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Over the last 75 years, the black raspberry industry in the United States has steadily declined due to a lack of adapted and disease resistant cultivars. The high anthocyanin content of black raspberry and associated health benefits have revived interest in production and breeding new cultivars. Wil...

  9. Does breed of ram affect ewe and lamb productivity?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Systematic use of breed diversity in terminal crossbreeding systems can improve the efficiency of commercial lamb production. Data from controlled research should be used to select the genetic line or lines of rams to use in terminal crossbreeding systems. Thus, research is underway at the USDA, ARS...

  10. Binucleation to breed new plant species adaptable to their environments.

    PubMed

    Moustafa, Khaled

    2015-01-01

    Classical plant breeding approaches may fall short to breed new plant species of high environmental and ecological interests. Biotechnological and genetic manipulations, on the other hand, may hold more effective capabilities to circumvent the limitations of sexual incompatibility and conventional breeding programs. Given that plant cells encompass multiple copies of organellar genomes (mitochondrial and plastidial genomes), an important question could be raised about whether an artificial attempt to duplicate the nuclear genome might also be conceivable through a binucleation approach (generating plant cells with 2 nuclei from 2 different plant species) for potential production of new polyploidies that would characterize new plant species. Since the complexities of plant genomes are the result of multiple genome duplications, an artificial binucleation approach would thus be of some interest to eventually varying plant genomes and producing new polyploidy from related or distal plant species. Here, I discuss the potentiality of such an approach to engineer binucleated plant cells as a germ of new plant species to fulfill some environmental applications such as increasing the biodiversity and breeding new species adaptable to harsh environmental stresses and increasing green surfaces to reduce atmospheric pollutions in arid lands with poor vegetation. PMID:26322577

  11. TILLING in forage grasses for gene discovery and breeding improvement.

    PubMed

    Manzanares, Chloe; Yates, Steven; Ruckle, Michael; Nay, Michelle; Studer, Bruno

    2016-09-25

    Mutation breeding has a long-standing history and in some major crop species, many of the most important cultivars have their origin in germplasm generated by mutation induction. For almost two decades, methods for TILLING (Targeting Induced Local Lesions IN Genomes) have been established in model plant species such as Arabidopsis (Arabidopsis thaliana L.), enabling the functional analysis of genes. Recent advances in mutation detection by second generation sequencing technology have brought its utility to major crop species. However, it has remained difficult to apply similar approaches in forage and turf grasses, mainly due to their outbreeding nature maintained by an efficient self-incompatibility system. Starting with a description of the extent to which traditional mutagenesis methods have contributed to crop yield increase in the past, this review focuses on technological approaches to implement TILLING-based strategies for the improvement of forage grass breeding through forward and reverse genetics. We present first results from TILLING in allogamous forage grasses for traits such as stress tolerance and evaluate prospects for rapid implementation of beneficial alleles to forage grass breeding. In conclusion, large-scale induced mutation resources, used for forward genetic screens, constitute a valuable tool to increase the genetic diversity for breeding and can be generated with relatively small investments in forage grasses. Furthermore, large libraries of sequenced mutations can be readily established, providing enhanced opportunities to discover mutations in genes controlling traits of agricultural importance and to study gene functions by reverse genetics. PMID:26924175

  12. On-line charge breeding using ECRIS and EBIS

    NASA Astrophysics Data System (ADS)

    Vondrasek, Richard

    2016-06-01

    The efficient and rapid production of a high-quality, pure beam of highly charged ions is at the heart of any radioactive ion beam facility. Whether an electron cyclotron resonance (ECR) ion source or an electron beam ion source (EBIS) is used to produce these highly charged ions, their operating characteristics will set the boundaries on the range of experiments which can be performed. In addition, time structure and duty cycle have to be considered when defining the operating parameters of the accelerator system as a whole. At Argonne National Laboratory (ANL), an ECR charge breeder was developed as part of the Californium Rare Ion Breeder Upgrade (CARIBU) program. The charge breeding efficiency and high charge state production of the source is at the forefront of ECR charge breeders, but its overall performance as part of the accelerator system is limited by pervasive background and relatively long breeding times. As such, an EBIS charge breeder has been developed and is running in an off-line configuration. It has already demonstrated good breeding efficiencies, shorter residence times, and reduced background and is scheduled to replace the ECR charge breeder in late 2015. The resultant change in duty cycle and time structure necessitates changes to the overall operation of the facility. The experiences with these breeders, as well as from several other facilities which already utilize an ECR or EBIS for charge breeding, help to define the operational characteristics of each technology - their strengths, their weaknesses, and the possible paths to improvement.

  13. Evaluation of cotton germplasm and breeding populations for salt tolerance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Three experiments were conducted in 2005 and 2007 to evaluate a total of 211 cotton germplasm and breeding lines for salt tolerance in the greenhouses. The randomized complete block designs with two or three replications were employed for those experiments. 200 mM salt solutions or tap water were ap...

  14. A century of potato breeding: improvement, diversification, and diversity

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Breeding within potato has relied almost entirely on phenotypic selection and little is known of the underlying genetic elements being acted upon. To characterize the effects of this selection on phenotypic and genotypic diversity within cultivated potato, the SolCAP 8300 Infinium SNP chip was utili...

  15. Yield stability in genotypes derived through basic breeding

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The sugarcane variety ‘LCP 85-384’ was derived through basic (introgression) breeding, and after its release in 1995, the variety quickly gained acreage in the state of Louisiana. The primary reason for the popularity of the variety was the plant vigor and increase in the number of ratoon harvests ...

  16. Breeding potential of introgressions into cotton: genetic effects and heterosis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    As new technology in the textile industry demands higher quality fibers, improving cotton fiber quality has become increasingly important. Twelve cotton lines selected from different breeding programs with diverse fiber characteristics were used for this study. These lines and their F2 hybrids were ...

  17. Increased use of young bulls in dairy cattle breeding programs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Availability of genomic evaluations since 2008 has provided many benefits with regard to improving the rate of genetic gain in dairy cattle breeding programs, one of which is a greater accuracy for young animals. As a result, AI organizations have been aggressively promoting young bulls and producer...

  18. Plant breeding for harmony between agriculture and the environment

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Crop improvements made since the 1950’s coupled with inexpensive agronomic inputs (fertilizers, herbicides, etc.) have resulted in agricultural production that has kept pace with population growth. Breeding programs primarily focus on improving a crop’s environmental adaptability and biotic stress t...

  19. Paternity testing in an autotetraploid alfalfa breeding polycross

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Determining unknown parentage in autotetraploid alfalfa (Medicago sativa L.) (2n = 4x = 32) can improve breeding gains. Exclusion analysis based paternity testing SAS code is presented, amenable to genotyping errors, for autotetraploid species utilizing co-dominant molecular markers with ambiguous d...

  20. 50 CFR 15.24 - Permits for cooperative breeding.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... PLANTS WILD BIRD CONSERVATION ACT Permits and Approval of Cooperative Breeding Programs § 15.24 Permits...: (1) A description of the exotic bird(s) to be imported, including: (i) The common and scientific..., at the time of the application, the exotic bird is still in the wild, has already been removed...