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Sample records for octupole traps structural

  1. Crystallization of ion clouds in octupole traps: Structural transitions, core melting, and scaling laws

    SciTech Connect

    Calvo, F.; Champenois, C.; Yurtsever, E.

    2009-12-15

    The stable structures and melting properties of ion clouds in isotropic octupole traps are investigated using a combination of semianalytical and numerical models, with a particular emphasis at finite-size scaling effects. Small-size clouds are found to be hollow and arranged in shells corresponding approximately to the solutions of the Thomson problem. The shell structure is lost in clusters containing more than a few thousands of ions, the inner parts of the cloud becoming soft and amorphous. While melting is triggered in the core shells, the melting temperature follows the rule expected for three-dimensional dense particles, with a depression scaling linearly with the inverse radius.

  2. Structure and dynamics of ion clusters in linear octupole traps: Phase diagrams, chirality, and melting mechanisms

    SciTech Connect

    Yurtsever, E.; Onal, E. D.; Calvo, F.

    2011-05-15

    The stable structures and melting dynamics of clusters of identical ions bound by linear octupole radiofrequency traps are theoretically investigated by global optimization methods and molecular dynamics simulations. By varying the cluster sizes in the range of 10-1000 ions and the extent of trap anisotropy by more than one order of magnitude, we find a broad variety of stable structures based on multiple rings at small sizes evolving into tubular geometries at large sizes. The binding energy of these clusters is well represented by two contributions arising from isotropic linear and octupolar traps. The structures generally exhibit strong size effects, and chiral arrangements spontaneously emerge in many crystals. Sufficiently large clusters form nested, coaxial tubes with different thermal stabilities. As in isotropic octupolar clusters, the inner tubes melt at temperatures that are lower than the overall melting point.

  3. Periodic orbits and shell structure in octupole deformed potentials

    SciTech Connect

    Heiss, W.D. ); Nazmitdinov, R.G. ); Radu, S. )

    1995-01-15

    The effect of an octupole term in a quadrupole deformed single-particle potential is studied from the classical and quantum-mechanical viewpoint. Whereas the problem is nonintegrable, the quantum-mechanical spectrum nevertheless shows some shell structure in the superdeformed prolate case for particular, yet fairly large octupole strengths; for spherical or oblate deformation the shell structure disappears. This result is associated with classical periodic orbits that are found by employing the removal of resonances method; this approximation method allows determination of the shape of the orbit and of the approximate octupole coupling strength for which it occurs. The validity of the method is confirmed by solving numerically the classical equations of motion. The quantum-mechanical shell structure is analyzed using the particle-number dependence of the fluctuating part of the total energy. In accordance with the classical result, this dependence turns out to be very similar for a superdeformed prolate potential plus octupole term and a hyperdeformed prolate potential without octupole term. In this way the shell structure is explained at least for some few hundred levels. The Fourier transform of the level density further corroborates these findings.

  4. Measuring the Nuclear Magnetic Octupole Moment of a Single Trapped Barium-137 Ion

    NASA Astrophysics Data System (ADS)

    Kleczewski, Adam; Fortson, Norval; Blinov, Boris

    2009-05-01

    Recent measurements of hyperfine structure in the cesium-133 atom resolved a nuclear magnetic octupole moment φ much larger than expected from the nuclear shell model[1]. To explore this issue further, we are undertaking an experiment to measure the hyperfine structure in the 5D manifold of a single trapped barium-137 ion which, together with reliable calculations in alkali-like Ba^+, should resolve φ with sensitivity better than the shell model value [2]. We use a TmHo:YLF laser tuned to 2051 nm and a fiber laser tuned to 1762 nm to drive the 6S1/2 to 5D3/2 and 6S1/2 to 5D5/2 electric quadrupole transitions. These lasers allow us to selectively populate any hyperfine sub-level in the 5D manifold. We will then perform RF spectroscopy on the 5D states to make a precision measurement of the hyperfine frequency intervals. We report on the development of the laser and RF spectroscopy systems. [1] V. Gerginov, A. Derevianko, and C. E. Tanner, Phys. Rev. Lett. 91, 072501 [2] K. Beloy, A. Derevianko, V. A. Dzuba, G. T. Howell, B. B. Blinov, E. N. Fortson, arXiv:0804.4317v1 [physics.atom-ph] 28 Apr 2008

  5. Construction and Operational Experience with a Superconducting Octupole Used to Trap Antihydrogen

    SciTech Connect

    Wanderer P.; Escallier, J.; Marone, A.; Parker, B.

    2011-09-06

    A superconducting octupole magnet has seen extensive service as part of the ALPHA experiment at CERN. ALPHA has trapped antihydrogen, a crucial step towards performing precision measurements of anti-atoms. The octupole was made at the Direct Wind facility by the Superconducting Magnet Division at Brookhaven National Laboratory. The magnet was wound with a six-around-one NbTi cable about 1 mm in diameter. It is about 300 mm long, with a radius of 25 mm and a peak field at the conductor of 4.04 T. Specific features of the magnet, including a minimal amount of material in the coil and coil ends with low multipole content, were advantageous to its use in ALPHA. The magnet was operated for six months a year for five years. During this time it underwent about 900 thermal cycles (between 4K and 100K). A novel operational feature is that during the course of data-taking the magnet was repeatedly shut off from its 950 A operating current. The magnet quenches during the shutoff, with a decay constant of 9 ms. Over the course of the five years, the magnet was deliberately quenched many thousands of times. It still performs well.

  6. Structural traps 5

    SciTech Connect

    Foster, N.H.; Beaumont, E.A.

    1991-01-01

    This book contains studies of oil and gas fields that are mainly structural in nature. Stratigraphy controls the extend of the reservoir in the traps of several fields, but overall, the main trapping features within the group of fields in this volume are structural. Fields covered in this volume include: Endicott Field, Point Arguello Field, West Puerto Chiquito Field, Dukhan Field, Sendji Field, Ruston Field, Raudhatain Field, Hassi Messaoud Field, Snapper Field, Tirrawarra Field, and Sacha Field.

  7. Octupole correlations in the heavy elements

    SciTech Connect

    Chasman, R.R.

    1986-01-01

    The effects of octupole correlations on the nuclear structure of the heavy elements are discussed. The cluster model description of the heavy elements is analyzed. The relevance of 2/sup 6/-pole deformation and fast El transitions to an octupole model is considered. 30 refs., 21 figs., 1 tab.

  8. Modified octupoles for damping coherent instabilities

    SciTech Connect

    Cornacchia, M. . Stanford Synchrotron Radiation Lab.); Corbett, W.J. ); Halbach, K. )

    1991-05-01

    The introduction tune spread in circular e{sup +}e{sup {minus}} accelerators with modified octupoles to reduce the loss of dynamic aperture is discussed. The new magnet design features an octupole of field component on-axis and a tapered field structure off-axis to minimize loss of dynamic aperture. Tracking studies show that the modified octupoles can produce the desired tune spread in SPEAR without compromising confinement of the beam. The technique for designing such magnets is presented, together with an example of magnets that give the required field distribution. 7 refs., 7 figs.

  9. Octupole collectivity in nuclei

    NASA Astrophysics Data System (ADS)

    Butler, P. A.

    2016-07-01

    The experimental and theoretical evidence for octupole collectivity in nuclei is reviewed. Recent theoretical advances, covering a wide spectrum from mean-field theory to algebraic and cluster approaches, are discussed. The status of experimental data on the behaviour of energy levels and electric dipole and electric octupole transition moments is reviewed. Finally, an outlook is given on future prospects for this field.

  10. Octupole shapes in heavy nuclei

    SciTech Connect

    Ahmad, I.

    1994-08-01

    Theoretical calculations and measurements show the presence of strong octupole correlations in thecyround states and low-lying states of odd-mass and odd-odd nuclei in the RaPa region. Evidence for octupole correlations is provided by the observation of parity doublets and reductions in M1 matrix elements, decoupling parameters, and Coriolis matrix elements Involving high-j states. Enhancement of E1 transition rates has also been observed for some of the octupole deformed nuclei. The most convincing argument for octupole deformation is provided by the similarities of the reduced alpha decay rates to the two members of parity doublets.

  11. Octupole correlation effects in nuclei

    SciTech Connect

    Chasman, R.R.

    1992-08-01

    Octupole correlation effects in nuclei are discussed from the point of view of many-body wavefunctions as well as mean-field methods. The light actinides, where octupole effects are largest, are considered in detail. Comparisons of theory and experiment are made for energy splittings of parity doublets; E1 transition matrix elements and one-nucleon transfer reactions.

  12. Octupole correlation effects in nuclei

    SciTech Connect

    Chasman, R.R.

    1992-01-01

    Octupole correlation effects in nuclei are discussed from the point of view of many-body wavefunctions as well as mean-field methods. The light actinides, where octupole effects are largest, are considered in detail. Comparisons of theory and experiment are made for energy splittings of parity doublets; E1 transition matrix elements and one-nucleon transfer reactions.

  13. High-precision Penning-trap mass measurements of heavy xenon isotopes for nuclear structure studies

    SciTech Connect

    Neidherr, D.; Cakirli, R. B.; Audi, G.; Lunney, D.; Minaya-Ramirez, E.; Naimi, S.; Beck, D.; Herfurth, F.; Blaum, K.; Boehm, Ch.; George, S.; Breitenfeldt, M.; Rosenbusch, M.; Schweikhard, L.; Casten, R. F.; Herlert, A.; Kowalska, M.; Kellerbauer, A.; Schwarz, S.

    2009-10-15

    With the double Penning-trap mass spectrometer ISOLTRAP at ISOLDE/CERN the masses of the neutron-rich isotopes {sup 136-146}Xe were measured with a relative uncertainty of the order of 10{sup -8} to 10{sup -7}. In particular, the masses of {sup 144-146}Xe were measured for the first time. These new mass values allow one to extend calculations of the mass surface in this region. Proton-Neutron interaction strength, obtained from double differences of binding energies, relate to subtle structural effects, such as the onset of octupole correlations, the growth of collectivity, and its relation to the underlying shell model levels. In addition, they provide a test of density functional calculations.

  14. Supershell structure in trapped dilute Fermi gases

    NASA Astrophysics Data System (ADS)

    Yu, Y.; Ögren, M.; Åberg, S.; Reimann, S. M.; Brack, M.

    2005-11-01

    We show that a dilute harmonically trapped two-component gas of fermionic atoms with a weak repulsive interaction has a pronounced super-shell structure: The shell fillings due to the spherical harmonic trapping potential are modulated by a beat mode. This changes the “magic numbers” occurring between the beat nodes by half a period. The length and amplitude of this beating mode depend on the strength of the interaction. We give a simple interpretation of the beat structure in terms of a semiclassical trace formula for the symmetry breaking U(3)→SO(3) .

  15. Supershell structure in trapped dilute Fermi gases

    SciTech Connect

    Yu, Y.; Oegren, M.; Aaberg, S.; Reimann, S. M.; Brack, M.

    2005-11-15

    We show that a dilute harmonically trapped two-component gas of fermionic atoms with a weak repulsive interaction has a pronounced super-shell structure: The shell fillings due to the spherical harmonic trapping potential are modulated by a beat mode. This changes the ''magic numbers'' occurring between the beat nodes by half a period. The length and amplitude of this beating mode depend on the strength of the interaction. We give a simple interpretation of the beat structure in terms of a semiclassical trace formula for the symmetry breaking U(3){yields}SO(3)

  16. Enhanced optical trapping via structured scattering

    NASA Astrophysics Data System (ADS)

    Taylor, Michael A.; Waleed, Muhammad; Stilgoe, Alexander B.; Rubinsztein-Dunlop, Halina; Bowen, Warwick P.

    2015-10-01

    Interferometry can completely redirect light, providing the potential for strong and controllable optical forces. However, small particles do not naturally act like interferometric beamsplitters and the optical scattering from them is not generally thought to allow efficient interference. Instead, optical trapping is typically achieved via deflection of the incident field. Here, we show that a suitably structured incident field can achieve beamsplitter-like interactions with scattering particles. The resulting trap offers order-of-magnitude higher stiffness than the usual Gaussian trap in one axis, even when constrained to phase-only structuring. We demonstrate trapping of 3.5-10.0 μm silica spheres, achieving a stiffness up to 27.5 ± 4.1 times higher than was possible using Gaussian traps as well as a two-orders-of-magnitude higher measured signal-to-noise ratio. These results are highly relevant to many applications, including cellular manipulation, fluid dynamics, micro-robotics and tests of fundamental physics.

  17. Observation of the Nuclear Magnetic Octupole Moment of 137Ba+

    NASA Astrophysics Data System (ADS)

    Hoffman, Matthew

    Single trapped ions are ideal systems in which to test atomic physics at high precision, which can in turn be used for searches for violations of fundamental symmetries and physics beyond the standard model, in addition to quantum computation and a number of other applications. The ion is confined in ultra-high vacuum, is laser cooled to mK temperatures, and kept well isolated from the environment which allows these experimental efforts. In this thesis, a few diagnostic techniques will be discussed, covering a method to measure the linewidth of a narrowband laser in the presence of magnetic field noise, as well as a procedure to measure the ion's temperature using such a narrowband laser. This work has led to two precision experiments to measure atomic structure in 138Ba+, and 137Ba+ discussed here. First, employing laser and radio frequency spectroscopy techniques in 138Ba+, we measured the Lande- gJ factor of the 5D5/2 level at the part-per-million level, the highest precision to date. Later, the development of apparatus to efficiently trap and laser cool 137Ba+ has enabled a measurement of the hyperfine splittings of the 5D3/2 manifold, culminating in the observation of the nuclear magnetic octupole moment of 137Ba+.

  18. Proposed s =±1 octupole bands in 140Xe

    NASA Astrophysics Data System (ADS)

    Huang, Y.; Zhu, S. J.; Hamilton, J. H.; Wang, E. H.; Ramayya, A. V.; Xiao, Z. G.; Li, H. J.; Luo, Y. X.; Rasmussen, J. O.; Ter-Akopian, G. M.; Oganessian, Yu. Ts.

    2016-06-01

    Level structures of neutron-rich 140Xe nucleus have been reinvestigated by using a triple γ coincidence study from the spontaneous fission of 252Cf. Several new levels and transitions are identified. The previously observed s =+1 octupole band structure is confirmed and expanded. Another set of the Δ I =2 positive and negative parity bands connected by strong E 1 transitions is proposed as the s =-1 octupole band structure. Thus, the s =±1 doublet octupole bands are completed in 140Xe. The experimental B (E 1 )/B (E 2 ) branching ratios indicate that the octupole correlations in 140Xe are weak. The other characteristics of the s =±1 octupole bands have been discussed.

  19. Trapping and reaction on inhomogeneous structures

    NASA Astrophysics Data System (ADS)

    Cassi, Davide

    2011-05-01

    We consider the problem of two chemical species, A and B, undergoing an annihilation process A + B → B, on generic discrete inhomogeneous structures, such as disordered solids, glasses, fractals, polymer networks and gels. Two particular cases are analysed: in the fist one A is immobile and B is diffusing (target decay process); in the second one A is diffusing and B is immobile (trapping process). The survival probability of A is analytically calculated in the limit of large times, showing that, while for the target decay it is related to the spectral dimension ? of the structure, for the trapping problem it depends, in general, on a different anomalous dimension, which we call the exploration dimension.

  20. Octupole correlations in the 144Ba nucleus described with symmetry-conserving configuration-mixing calculations

    NASA Astrophysics Data System (ADS)

    Bernard, Rémi N.; Robledo, Luis M.; Rodríguez, Tomás R.

    2016-06-01

    We study the interplay of quadrupole and octupole degrees of freedom in the structure of the isotope 144Ba. A symmetry-conserving configuration-mixing method (SCCM) based on a Gogny energy density functional (EDF) has been used. The method includes particle number, parity, and angular momentum restoration as well as axial quadrupole and octupole shape mixing within the generator coordinate method. Predictions both for excitation energies and electromagnetic transition probabilities are in good agreement with the most recent experimental data.

  1. Octupole Deformation and Signature Inversion in 145Ba

    NASA Astrophysics Data System (ADS)

    Zhu, Sheng-jiang; Sakhaee, M.; Hamilton H., J.; Ramayya V., A.; Gan, Cui-yun; Zhu, Ling-yan; Yang, Li-ming; Long, Gui-lu; Pau, San-li; Babu R. S., B.; Hwang K., J.; Ma C., W.; Komicki, J.; Zhang Q., X.; Jones F., E.; Cole D., J.; Aryaeinejad, R.; Drigert W., M.; Rasmussen O., J.; Stoyer A., M.; Chu Y., S.; Gregorich E., K.; Mohar F., M.; Prussin G., S.; Lee Y., I.; Yu., Oganessian Ts.; Ter-Akopian M., G.; Daniel V., A.

    1999-10-01

    High spin states in neutron-rich odd-N 145Ba nucleus have been investigated from study of prompt γ-rays in spontaneous fission of 252Cf. The alternating parity bands are identified indicating octupole deformation with simplex quantum number s = -i. The ground state band shows signature splitting and inversion at low spin. These collective band structures exhibit the competition and co-existence between symmetric and asymmetric shapes.

  2. Octupole correlations in low-lying states of 150Nd and 150Sm and their impact on neutrinoless double-β decay

    NASA Astrophysics Data System (ADS)

    Yao, J. M.; Engel, J.

    2016-07-01

    We present a generator-coordinate calculation, based on a relativistic energy-density functional, of the low-lying spectra in the isotopes 150Nd and 150Sm and of the nuclear matrix element that governs the neutrinoless double-β decay of the first isotope to the second. We carefully examine the impact of octupole correlations on both nuclear structure and the double-β decay matrix element. Octupole correlations turn out to reduce quadrupole collectivity in both nuclei. Shape fluctuations, however, dilute the effects of octupole deformation on the double-β decay matrix element, so that the overall octupole-induced quenching is only about 7 % .

  3. Octupole collectivity in 94Zr

    NASA Astrophysics Data System (ADS)

    Toh, Y.; Oshima, M.; Koizumi, M.; Osa, A.; Kimura, A.; Sugawara, M.; Goto, J.

    2009-01-01

    The Zr isotopes between 90Zr and 96Zr are expected to be spherical based on the almost complete subshell closures at Z = 40 and N = 50, 56. On the other hand, they have low-lying 3- states and show the characteristics of low frequency octupole oscillation which arise as a superposition of particle-hole excitations. A 380 MeV 94Zr beam from the tandem accelerator at the Japan Atomic Energy Agency (JAEA) was excited on a self-supporting natPb target. The gamma-ray detector array GEMINI-II was used to detect deexcitation gamma rays. The scattered beam (94Zr) was detected with a position-sensitive particle detector system. The gamma-ray intensities were used as an input to the least-squares search code GOSIA to determine the E3 matrix element of the first 3- excited state of 94Zr. The B(E3;0+→3-) value of 0.21(6) e2b3 in 94Zr has been obtained by Coulomb excitation experiment.

  4. Trapping of branched DNA in microfabricated structures.

    PubMed Central

    Volkmuth, W D; Duke, T; Austin, R H; Cox, E C

    1995-01-01

    We have observed electrostatic trapping of tribranched DNA molecules undergoing electrophoresis in a microfabricated pseudo-two-dimensional array of posts. Trapping occurs in a unique transport regimen in which the electrophoretic mobility is extremely sensitive to polymer topology. The arrest of branched polymers is explained by considering their center-of-mass motion; in certain conformations, owing to the constraints imposed by the obstacles a molecule cannot advance without the center of mass first moving a short distance backwards. The depth of the resulting local potential well can be much greater than the thermal energy so that escape of an immobilized molecule can be extremely slow. We summarize the expected behavior of the mobility as a function of field strength and topology and point out that the microfabricated arrays are highly suitable for detecting an extremely small number of branched molecules in a very large population of linear molecules. Images Fig. 2 PMID:7624337

  5. Octupole Deformation Bands of πh11/2 in Neutron-Rich 145,147La Nuclei

    NASA Astrophysics Data System (ADS)

    Zhu, Sheng-jiang; S, Zhu J.; Wang, Mu-ge; J, Hamilton H.; A, Ramayya V.; B, Babu R. S.; W, Ma C.; Long, Gui-lu; Zhu, Ling-yan; Li, Ming; A, Sakhaee; Gan, Cui-yun; Yang, Li-ming; J, Komicki; J, Cole D.; R, Aryaeinejad; M, Drigert W.; J, Rasmussen O.; M, Stoyer A.; S, Chu Y.; K, Gregorich E.; M, Mohar F.; S, Prussin G.; I, Lee Y.; Yu, Oganessian Ts; G, Ter-Akopian M.; A, Daniel V.

    1999-03-01

    Octupole deformation bands built on πh11/2 orbital in neutron-rich odd-Z 145,147La nuclei have been investigated by measuring the prompt γ-rays emitted from the 252Cf source. The alternating parity band structures and strong E1 transitions observed between negative- and positive-parity bands in both nuclei indicate the octupole deformation enhanced by the h11/2 single proton coupling. According to observed energy displacements the octupole deformation becomes stable at the intermediate spin states.

  6. Search for octupole correlations in 147Nd

    NASA Astrophysics Data System (ADS)

    Ruchowska, E.; Mach, H.; Kowal, M.; Skalski, J.; Płóciennik, W. A.; Fogelberg, B.

    2015-09-01

    Properties of excited states in 147Nd have been studied with the multispectra and γ γ coincidence measurements. Twenty-four new γ lines and three new levels have been introduced into the level scheme of 147Nd. Using the advanced time-delayed β γ γ (t ) method, we measured lifetimes of eight excited levels in 147Nd, populated via the β decay of 147Pr. We have determined reduced transition probabilities for 30 γ transitions. Multidimensional potential energy surface calculations performed for 147Nd suggest two single-quasiparticle configurations with nonzero octupole deformation, with K =1 /2 and K =5 /2 . Our calculations also predict a sizable value of the electric dipole moment | D0|=0.26 e fm for this nucleus, while experimentally, a lower limit of | D0|≥0.02 e fm has been evaluated for the supposed K =1 /2 parity doublet. In contrast to the theoretical results, we do not observe the parity doublet bands with K =5 /2 . This, and the lack of theoretically expected E 1 strength in Nd,149147 may signal some poorly understood structural effect in the odd-N lanthanides.

  7. Nonaxial-octupole effect in superheavy nuclei

    SciTech Connect

    Chen, Y.-S.; Sun, Yang; Gao Zaochun

    2008-06-15

    The triaxial-octupole Y{sub 32} correlation in atomic nuclei has long been expected to exist but experimental evidence has not been clear. We find, in order to explain the very low-lying 2{sup -} bands in the transfermium mass region, that this exotic effect may manifest itself in superheavy elements. Favorable conditions for producing triaxial-octupole correlations are shown to be present in the deformed single-particle spectrum, which is further supported by quantitative Reflection Asymmetric Shell Model calculations. It is predicted that the strong nonaxial-octupole effect may persist up to the element 108. Our result thus represents the first concrete example of spontaneous breaking of both axial and reflection symmetries in the heaviest nuclear systems.

  8. A novel antiproton radial diagnostic based on octupole induced ballistic loss

    SciTech Connect

    Andresen, G. B.; Bowe, P. D.; Hangst, J. S.; Bertsche, W.; Butler, E.; Charlton, M.; Humphries, A. J.; Jenkins, M. J.; Joergensen, L. V.; Madsen, N.; Werf, D. P. van der; Bray, C. C.; Chapman, S.; Fajans, J.; Povilus, A.; Wurtele, J. S.; Cesar, C. L.; Lambo, R.; Silveira, D. M.; Fujiwara, M. C.

    2008-03-15

    We report results from a novel diagnostic that probes the outer radial profile of trapped antiproton clouds. The diagnostic allows us to determine the profile by monitoring the time history of antiproton losses that occur as an octupole field in the antiproton confinement region is increased. We show several examples of how this diagnostic helps us to understand the radial dynamics of antiprotons in normal and nested Penning-Malmberg traps. Better understanding of these dynamics may aid current attempts to trap antihydrogen atoms.

  9. Crystal structure of unliganded TRAP: implications for dynamic allostery.

    PubMed

    Malay, Ali D; Watanabe, Masahiro; Heddle, Jonathan G; Tame, Jeremy R H

    2011-03-15

    Allostery is vital to the function of many proteins. In some cases, rather than a direct steric effect, mutual modulation of ligand binding at spatially separated sites may be achieved through a change in protein dynamics. Thus changes in vibrational modes of the protein, rather than conformational changes, allow different ligand sites to communicate. Evidence for such an effect has been found in TRAP (trp RNA-binding attenuation protein), a regulatory protein found in species of Bacillus. TRAP is part of a feedback system to modulate expression of the trp operon, which carries genes involved in tryptophan synthesis. Negative feedback is thought to depend on binding of tryptophan-bound, but not unbound, TRAP to a specific mRNA leader sequence. We find that, contrary to expectations, at low temperatures TRAP is able to bind RNA in the absence of tryptophan, and that this effect is particularly strong in the case of Bacillus stearothermophilus TRAP. We have solved the crystal structure of this protein with no tryptophan bound, and find that much of the structure shows little deviation from the tryptophan-bound form. These data support the idea that tryptophan may exert its effect on RNA binding by TRAP through dynamic and not structural changes, and that tryptophan binding may be mimicked by low temperature. PMID:21175426

  10. Collective states of odd nuclei in a model with quadrupole-octupole degrees of freedom

    SciTech Connect

    Minkov, N. Drenska, S. B.; Yotov, P.; Bonatsos, D. Scheid, W.

    2007-08-15

    We apply the collective axial quadrupole-octupole Hamiltonian to describe the rotation-vibration motion of odd nuclei with Coriolis coupling between the even-even core and the unpaired nucleon.We consider that the core oscillates coherently with respect to the quadrupole and octupole axialdeformation variables. The coupling between the core and the unpaired nucleon provides a split paritydoublet structure of the spectrum. The formalism successfully reproduces the parity-doublet splitting in a wide range of odd-A nuclei. It provides model estimations for the third angular-momentum projection K on the intrinsic symmetry axis and the related intrinsic nuclear structure.

  11. Enhanced light trapping in periodically truncated cone silicon nanowire structure

    NASA Astrophysics Data System (ADS)

    Kai, Qiu; Yuhua, Zuo; Tianwei, Zhou; Zhi, Liu; Jun, Zheng; Chuanbo, Li; Buwen, Cheng

    2015-10-01

    Light trapping plays an important role in improving the conversion efficiency of thin-film solar cells. The good wideband light trapping is achieved using our periodically truncated cone Si nanowire (NW) structures, and their inherent mechanism is analyzed and simulated by FDTD solution software. Ordered cylinder Si NW structure with initial size of 80 nm and length of 200 nm is grown by pattern transfer and selective epitaxial growth. Truncated cone Si NW array is then obtained by thermal oxidation treatment. Its mean reflection in the range of 300-900 nm is lowered to be 5% using 140 nm long truncated cone Si NW structure, compared with that of 20% using cylinder counterparts. It indicates that periodically truncated Si cone structures trap the light efficiently to enhance the light harvesting in a wide spectral range and have the potential application in highly efficient NW solar cells. Project supported by the National Natural Science Foundation of China (Nos. 51072194, 61021003, 61036001, 61376057).

  12. First Attempts at Antihydrogen Trapping in ALPHA

    SciTech Connect

    Andresen, G. B.; Bowe, P. D.; Hangst, J. S.; Bertsche, W.; Butler, E.; Charlton, M.; Humphries, A. J.; Jenkins, M. J.; Joergensen, L. V.; Madsen, N.; Werf, D. P. van der; Bray, C. C.; Chapman, S.; Fajans, J.; Povilus, A.; Wurtele, J. S.; Cesar, C. L.; Lambo, R.; Silveira, D. M.; Fujiwara, M. C.

    2008-08-08

    The ALPHA apparatus is designed to produce and trap antihydrogen atoms. The device comprises a multifunction Penning trap and a superconducting, neutral atom trap having a minimum-B configuration. The atom trap features an octupole magnet for transverse confinement and solenoidal mirror coils for longitudinal confinement. The magnetic trap employs a fast shutdown system to maximize the probability of detecting the annihilation of released antihydrogen. In this article we describe the first attempts to observe antihydrogen trapping.

  13. Hitting and trapping times on branched structures.

    PubMed

    Agliari, Elena; Sartori, Fabio; Cattivelli, Luca; Cassi, Davide

    2015-05-01

    In this work we consider a simple random walk embedded in a generic branched structure and we find a close-form formula to calculate the hitting time H(i,f) between two arbitrary nodes i and j. We then use this formula to obtain the set of hitting times {H(i,f)} for combs and their expectation values, namely, the mean first-passage time, where the average is performed over the initial node while the final node f is given, and the global mean first-passage time, where the average is performed over both the initial and the final node. Finally, we discuss applications in the context of reaction-diffusion problems. PMID:26066144

  14. Hitting and trapping times on branched structures

    NASA Astrophysics Data System (ADS)

    Agliari, Elena; Sartori, Fabio; Cattivelli, Luca; Cassi, Davide

    2015-05-01

    In this work we consider a simple random walk embedded in a generic branched structure and we find a close-form formula to calculate the hitting time H (i ,f ) between two arbitrary nodes i and j . We then use this formula to obtain the set of hitting times {H (i,f)} for combs and their expectation values, namely, the mean first-passage time, where the average is performed over the initial node while the final node f is given, and the global mean first-passage time, where the average is performed over both the initial and the final node. Finally, we discuss applications in the context of reaction-diffusion problems.

  15. Evolution of octupole correlations in 123Ba

    NASA Astrophysics Data System (ADS)

    Chen, X. C.; Zhao, J.; Xu, C.; Hua, H.; Shneidman, T. M.; Zhou, S. G.; Wu, X. G.; Li, X. Q.; Zhang, S. Q.; Li, Z. H.; Liang, W. Y.; Meng, J.; Xu, F. R.; Qi, B.; Ye, Y. L.; Jiang, D. X.; Cheng, Y. Y.; He, C.; Sun, J. J.; Han, R.; Niu, C. Y.; Li, C. G.; Li, P. J.; Wang, C. G.; Wu, H. Y.; Li, Z. H.; Zhou, H.; Hu, S. P.; Zhang, H. Q.; Li, G. S.; He, C. Y.; Zheng, Y.; Li, C. B.; Li, H. W.; Wu, Y. H.; Luo, P. W.; Zhong, J.

    2016-08-01

    High-spin states of 123Ba have been studied via the 108Cd(19F,3 n p )123Ba fusion-evaporation reaction at a beam energy of 90 MeV. Several E 1 transitions linking the positive-parity ν (d5 /2+g7 /2) band and negative-parity ν h11 /2 band are observed in 123Ba for the first time. Evidence for the existence of octupole correlations in 123Ba is presented based on the systematic comparisons of the B (E 1 )/B (E 2 ) branching ratios and the energy displacements in odd-A Ba isotopes. The characteristics of octupole correlation in the odd-A Ba,125123 are explained by the state-of-the-art multidimensionally-constrained relativistic mean-field model and cluster model based on the dinuclear system concept.

  16. Experiments on Structure and Trapping of Coulomb balls

    SciTech Connect

    Block, D.; Arp, O.; Piel, A.; Melzer, A.

    2006-10-18

    This paper gives a survey of recent experiments on Coulomb balls. Starting with typical observations to introduce the Coulomb ball experiment and its diagnostic potential, their structural properties are discussed. Further, the trapping mechanism for the dust is quantified to allow for a systematic comparison of experiment and simulations. Finally, the presented results focus on the question how screening influences the structural properties and how Coulomb balls and other strongly coupled systems are related.

  17. Structural ordering of trapped colloids with competing interactions

    NASA Astrophysics Data System (ADS)

    Costa Campos, L. Q.; Apolinario, S. W. S.; Löwen, H.

    2013-10-01

    The structure of colloids with competing interactions which are confined in a harmonic external trap potential is analyzed numerically by energy minimization in two spatial dimensions. A wealth of different cluster structures is found to be stable including clusters with a fringed outer rim (reminiscent to an ornamental border), clusters perforated with voids, as well as clusters with a crystalline core and a disordered rim. All cluster structures occur in a two-dimensional parameter space. The structural ordering can therefore be efficiently tuned by changing few parameters only providing access to a controlled fabrication of colloidal clusters.

  18. Precision Penning Trap Mass Measurements for Nuclear Structure at Triumf

    NASA Astrophysics Data System (ADS)

    Kwiatkowski, A. A.; Dilling, J.; Andreoiu, C.; Brunner, T.; Chaudhuri, A.; Chowdhury, U.; Delheij, P.; Ettenauer, S.; Frekers, D.; Gallant, A. T.; Grossheim, A.; Gwinner, G.; Lennarz, A.; Mané, E.; Pearson, M. R.; Schultz, B. E.; Simon, M. C.; Simon, V. V.

    2013-03-01

    Precision determinations of ground state or even isomeric state masses reveal fingerprints of nuclear structure. In particular at the limits at existence for very neutron-rich or deficient isotopes, this allows one to find detailed information about nuclear structure from separation energies or binding energies. This is important to test theoretical predictions or to refine model approaches, for example for new "magic numbers," as predicted around N = 34, where strong indications exist that the inclusion of NNN forces in theoretical calculations for Ca isotopes leads to significantly better predictions for ground state binding energies. Similarly, halo nuclei present an excellent application for ab-initio theory, where ground state properties, like masses and radii, present prime parameters for testing our understanding of nuclear structure. Precision mass determinations at TRIUMF are carried out with the TITAN (TRIUMF's Ion Trap for Atomic and Nuclear science) system. It is an ion trap setup coupled to the on-line facility ISAC. TITAN has measured masses of isotopes as short-lived as 9 ms (almost an order of magnitude shorter-lived than any other Penning trap system) and the only one with charge breeding capabilities, a feature that allows us to boost the precision by almost 2 orders of magnitude. We recently were able to make use of this feature by measuring short-lived Rb-isotopes, up to 74Rb, and reaching the 12+ charge state, which together with other improvements lead to an increase in precision by a factor 36.

  19. Trapped-mode resonances in asymmetric terahertz subwavelength structures

    NASA Astrophysics Data System (ADS)

    Chen, Wei; Zhou, Qingli; Shi, Yulei; Li, Chenyu; Zhang, Cunlin

    2016-07-01

    We demonstrate that the trapped-mode resonance with Fano-shaped spectrum can be induced in terahertz metamaterial with asymmetric double-bar structure. Spacing between two bars permits the tuning of resonant position and lineshape in a controlled manner, showing an anomalous increased coupling strength with spacing. The steep phase change around transparency region indicates slow-light effect proved by the retrieved group delays. Simulated results verify the coupling that exists between the bars of the same unit cell and those of the neighbouring cells. Our simplified structure offers the potential application in terahertz modulators and slow-light devices.

  20. Anharmonicity of the excited octupole band in actinides using supersymmetric quantum mechanics

    NASA Astrophysics Data System (ADS)

    Jolos, R. V.; von Brentano, P.; Casten, R. F.

    2013-09-01

    Background: Low-lying octupole collective excitations play an important role in the description of the structure of nuclei in the actinide region. Ground state alternating parity rotational bands combining both positive and negative parity states are known in several nuclei. However, only recently it has been discovered in 240Pu an excited positive parity rotational band having an octupole nature and demonstrating strong anharmonicity of the octupole motion in the band head energies.Purpose: To suggest a model describing both ground state and excited alternating parity bands, which includes a description of the anharmonic effects in the bandhead excitation energies and can be used to predict the energies of the excited rotational bands of octupole nature and the E1 transition probabilities.Methods: The mathematical technique of the supersymmetric quantum mechanics with a collective Hamiltonian depending only on the octupole collective variable which keeps axial symmetry is used to describe the ground state and excited alternating parity rotational bands.Results: The excitation energies of the states belonging to the lowest negative parity and the excited positive parity bands are calculated for 232Th, 238U, and 240Pu. The E1 transition matrix elements are also calculated for 240Pu.Conclusions: It is shown that the suggested model describes the excitation energies of the states of the lowest negative parity band with the accuracy around 10 keV. The anharmonicity in the bandhead energy of the excited positive parity band is described also. The bandhead energy of the excited positive parity band is described with the accuracy around 100 keV.

  1. Search for two-phonon octupole excitations in 146Gd

    NASA Astrophysics Data System (ADS)

    Orce, J. N.; Kumar Raju, M.; Khumalo, N. A.; Dinoko, T. S.; Jones, P.; Bark, R. A.; Lawrie, E. A.; Majola, S. N. T.; Robledo, L. M.; Rubio, B.; Wiedeking, M.; Easton, J.; Khaleel, E. A.; Kheswa, B. V.; Kheswa, N.; Herbert, M. S.; Lawrie, J. J.; Masiteng, P. L.; Nchodu, M. R.; Ndayishimye, J.; Negi, D.; Noncolela, S. P.; Ntshangase, S. S.; Papka, P.; Roux, D. G.; Shirinda, O.; Sithole, P. S.; Yates, S. W.

    2016-06-01

    The low-spin structure of the nearly spherical nucleus 146Gd was studied using the 144Sm(4He, 2n) fusion-evaporation reaction. High-statistics γ - γ coincidence measurements were performed at iThemba LABS with 7× 109 γ- γ coincidence events recorded. Gated γ-ray energy spectra show evidence for the 6+2 → 3-1 → 0+1 cascade of E3 transitions in agreement with recent findings by Caballero and co-workers, but with a smaller branching ratio of I_{γ} = 4.7(10) for the 6+2 → 3-1 1905.1 keV γ ray. Although these findings may support octupole vibrations in spherical nuclei, sophisticated beyond mean-field calculations including angular-momentum projection are required to interpret in an appropriate way the available data due to the failure of the rotational model assumptions in this nucleus.

  2. Geometry and evolution of structural traps formed by inversion structures

    SciTech Connect

    Mitra, S. )

    1994-07-01

    Inversion structures form by compressional reactivation of preexisting extensional structures. Experimental models and observations of natural structures are used to develop quantitative models for the geometry and kinematic evolution of inversion structures. Two main mechanisms of formation of inversion structures are analyzed: (1) fault-propagation folding on planar faults, and (2) fault-bend folding on listric faults. Inversion structures formed by fault-propagation folding are characterized by the upward termination of a basement fault into a tight fold and thickening of synextensional units into the basin. Inversion structures formed by fault-bend folding are characterized by open-fold geometries and thickening of synextensional units into the fault zone. Characteristic variations in fold geometry and bed thickness provide predictive models for interpreting the subsurface geometries of these two classes of inversion structures in areas with poor seismic data. Examples of both types of structures are described from the Taranaki basin, the southern North Sea, and the Kangean Basin.

  3. Application of the triaxial quadrupole-octupole rotor to the ground and negative-parity levels of actinide nuclei

    NASA Astrophysics Data System (ADS)

    Nadirbekov, M. S.; Minkov, N.; Strecker, M.; Scheid, W.

    2016-03-01

    In this work, we examine the possibility to describe yrast positive- and negative-parity excitations of deformed even-even nuclei through a collective rotation model in which the nuclear surface is characterized by triaxial quadrupole and octupole deformations. The nuclear moments of inertia are expressed as sums of quadrupole and octupole parts. By assuming an adiabatic separation of rotation and vibration degrees of freedom, we suppose that the structure of the positive- and negative-parity bands may be determined by the triaxial-rigid-rotor motion of the nucleus. By diagonalizing the Hamiltonian in a symmetrized rotor basis with embedded parity, we obtain a model description for the yrast positive- and negative-parity bands in several actinide nuclei. We show that the energy displacement between the opposite-parity sequences can be explained as the result of the quadrupole-octupole triaxiality.

  4. Octupole and hexadecapole bands in 152Sm

    SciTech Connect

    Garrett, P E; Kulp, W D; Wood, J L; Bandyopadhyay, D; Christen, S; Choudry, S; Dewald, A; Fitzler, A; Fransen, C; Jessen, K; Jolie, J; Kloezer, A; Kudejova, P; Kumar, A; Lesher, S R; Linnemann, A; Lisetskiy, A; Martin, D; Masur, M; McEllistrem, M T; Moller, O; Mynk, M; Orce, J N; Pejovic, P; Pissulla, T; Regis, J; Schiller, A; Tonev, D; Yates, S W

    2005-05-13

    The nucleus {sup 152}Sm is characterized by a variety of low-energy collective modes, conventionally described as rotations, {beta} vibrations, and {gamma} vibrations. Recently, it has been suggested that {sup 152}Sm is at a critical point between spherical and deformed collective phases. Consequently, {sup 152}Sm is being studied by a variety of techniques, including radioactive decay, multi-step Coulomb excitation, in-beam ({alpha},2n{gamma}) {gamma}-ray spectroscopy, and (n,n'{gamma}) spectroscopy. The present work focuses on the latter two reactions; these have been used to investigate the low-lying bands associated with the octupole degree of freedom, including one built on the first excited 0{sup +} band. In addition, the K{sup {pi}} = 4{sup +} hexadecapole vibrational band has been identified.

  5. Glassy Structural Trapping in Soft Multi-Face Colloids

    NASA Astrophysics Data System (ADS)

    Priestley, Rodney

    Nanoparticles with soft, heterogeneously patterned surfaces often exhibit unique, multi-functional behaviors in response to environmental stimuli. The soft, polymeric nature of the particle surface, moreover, allows for the tailoring of both surface architecture and chemical composition towards particular applications. We have recently demonstrated that Precipitation-Induced Self Assembly (PISA) can be used to form soft Janus colloids as well as multi-faceted colloids in a scalable approach in which many colloidal characteristics can be controlled independently. Here, we present evidence not only of kinetic trapping in the formation of rapidly precipitated, multi-surface polymer particles; but also delineate the role of polymer vitrification in the determination of multi-faceted particle structures.

  6. Extraterrestrial Helium Trapped in Fullerenes in the Sudbury Impact Structure

    NASA Technical Reports Server (NTRS)

    Becker, Luann; Poreda, Robert J.; Bada, Jeffrey L.

    1996-01-01

    Fullerenes (C60 and C70) in the Sudbury impact structure contain trapped helium with a He-3/He-4 ratio of 5.5 x 10(exp -4) to 5.9 x 10(exp -4). The He-3/He-4 ratio exceeds the accepted solar wind value by 20 to 30 percent and is higher by an order of magnitude than the maximum reported mantle value. Terrestrial nuclear reactions or cosmic-ray bombardment are not sufficient to generate such a high ratio. The He-3/He-4 ratios in the Sudbury fullerenes are similar to those found in meteorites and in some interplanetary dust particles. The implication is that the helium within the C60 molecules at Sudbury is of extraterrestrial origin.

  7. Structure of the signal transduction protein TRAP (target of RNAIII-activating protein)

    PubMed Central

    Henrick, Kim; Hirshberg, Miriam

    2012-01-01

    The crystal structure of the signal transduction protein TRAP is reported at 1.85 Å resolution. The structure of TRAP consists of a central eight-stranded β-­barrel flanked asymmetrically by helices and is monomeric both in solution and in the crystal structure. A formate ion was found bound to TRAP identically in all four molecules in the asymmetric unit. PMID:22750855

  8. Evidence for Octupole Correlations in Multiple Chiral Doublet Bands.

    PubMed

    Liu, C; Wang, S Y; Bark, R A; Zhang, S Q; Meng, J; Qi, B; Jones, P; Wyngaardt, S M; Zhao, J; Xu, C; Zhou, S-G; Wang, S; Sun, D P; Liu, L; Li, Z Q; Zhang, N B; Jia, H; Li, X Q; Hua, H; Chen, Q B; Xiao, Z G; Li, H J; Zhu, L H; Bucher, T D; Dinoko, T; Easton, J; Juhász, K; Kamblawe, A; Khaleel, E; Khumalo, N; Lawrie, E A; Lawrie, J J; Majola, S N T; Mullins, S M; Murray, S; Ndayishimye, J; Negi, D; Noncolela, S P; Ntshangase, S S; Nyakó, B M; Orce, J N; Papka, P; Sharpey-Schafer, J F; Shirinda, O; Sithole, P; Stankiewicz, M A; Wiedeking, M

    2016-03-18

    Two pairs of positive-and negative-parity doublet bands together with eight strong electric dipole transitions linking their yrast positive- and negative-parity bands have been identified in ^{78}Br. They are interpreted as multiple chiral doublet bands with octupole correlations, which is supported by the microscopic multidimensionally-constrained covariant density functional theory and triaxial particle rotor model calculations. This observation reports the first example of chiral geometry in octupole soft nuclei. PMID:27035296

  9. Evidence for Octupole Correlations in Multiple Chiral Doublet Bands

    NASA Astrophysics Data System (ADS)

    Liu, C.; Wang, S. Y.; Bark, R. A.; Zhang, S. Q.; Meng, J.; Qi, B.; Jones, P.; Wyngaardt, S. M.; Zhao, J.; Xu, C.; Zhou, S.-G.; Wang, S.; Sun, D. P.; Liu, L.; Li, Z. Q.; Zhang, N. B.; Jia, H.; Li, X. Q.; Hua, H.; Chen, Q. B.; Xiao, Z. G.; Li, H. J.; Zhu, L. H.; Bucher, T. D.; Dinoko, T.; Easton, J.; Juhász, K.; Kamblawe, A.; Khaleel, E.; Khumalo, N.; Lawrie, E. A.; Lawrie, J. J.; Majola, S. N. T.; Mullins, S. M.; Murray, S.; Ndayishimye, J.; Negi, D.; Noncolela, S. P.; Ntshangase, S. S.; Nyakó, B. M.; Orce, J. N.; Papka, P.; Sharpey-Schafer, J. F.; Shirinda, O.; Sithole, P.; Stankiewicz, M. A.; Wiedeking, M.

    2016-03-01

    Two pairs of positive-and negative-parity doublet bands together with eight strong electric dipole transitions linking their yrast positive- and negative-parity bands have been identified in 78Br. They are interpreted as multiple chiral doublet bands with octupole correlations, which is supported by the microscopic multidimensionally-constrained covariant density functional theory and triaxial particle rotor model calculations. This observation reports the first example of chiral geometry in octupole soft nuclei.

  10. Chaos in axially symmetric potentials with octupole deformation

    SciTech Connect

    Heiss, W.D.; Nazmitdinov, R.G.; Radu, S. Departamento de Fisica Teorica C-XI, Universidad Autonoma de Madrid, E-28049, Madrid )

    1994-04-11

    Classical and quantum mechanical results are reported for the single particle motion in a harmonic oscillator potential which is characterized by a quadrupole deformation and an additional octupole deformation. The chaotic character of the motion is strongly dependent on the quadrupole deformation in that for a prolate deformation virtually no chaos is discernible while for the oblate case the motion shows strong chaos when the octupole term is turned on.

  11. Coherent quadrupole-octupole modes and split parity-doublet spectra in odd-A nuclei

    SciTech Connect

    Minkov, N.; Drenska, S.; Yotov, P.; Lalkovski, S.; Bonatsos, D.; Scheid, W.

    2007-09-15

    A collective model describing coherent quadrupole-octupole oscillations and rotations with a Coriolis coupling between the even-even core and the unpaired nucleon is applied to odd nuclei. The particle-core coupling provides a parity-doublet structure of the spectrum, whereas the quadrupole-octupole motion leads to a splitting of the doublet energy levels. The formalism successfully reproduces the split parity-doublet spectra and the attendant B(E1) and B(E2) transition probabilities in a wide range of odd-A nuclei. It provides estimations for the influence of the Coriolis interaction on the collective motion and subsequently for the value of angular momentum projection K on which the spectrum is built. The analysis of the energy splitting and B(E1) transition probabilities between opposite parity counterparts suggests degenerate doublet structures at high angular momenta. The study provides information about the evolution of quadrupole-octupole collectivity in odd-mass nuclei.

  12. Spectroscopy of quadrupole and octupole states in rare-earth nuclei from a Gogny force

    NASA Astrophysics Data System (ADS)

    Nomura, K.; Rodríguez-Guzmán, R.; Robledo, L. M.

    2015-07-01

    Collective quadrupole and octupole states are described in a series of Sm and Gd isotopes within the framework of the interacting boson model (IBM), whose Hamiltonian parameters are deduced from mean-field calculations with the Gogny energy density functional. The link between both frameworks is the (β2β3 ) potential energy surface computed within the Hartree-Fock-Bogoliubov framework in the case of the Gogny force. The diagonalization of the IBM Hamiltonian provides excitation energies and transition strengths of an assorted set of states including both positive- and negative-parity states. The resultant spectroscopic properties are compared with the available experimental data and also with the results of the configuration mixing calculations with the Gogny force within the generator coordinate method (GCM). The structure of excited 0+ states and its connection with double-octupole phonons is also addressed. The model is shown to describe the empirical trend of the low-energy quadrupole and octupole collective structure fairly well and turns out to be consistent with GCM results obtained with the Gogny force.

  13. Trapping, Anomalous Transport, and Quasi-coherent Structures in Magnetically Confined Plasmas

    NASA Astrophysics Data System (ADS)

    Vlad, Madalina; Spineanu, Florin

    Strong electrostatic turbulence in magnetically confined plasmas is characterized by trapping or eddying of particle trajectories produced by the E × B stochastic drift. Trapping is shown to produce strong effects on test particles and on test modes by causing nonstandard trajectory statistics: non-Gaussian distribution, memory effects, and coherence. Trapped trajectories form quasi-coherent structure. Trajectory trapping has strong nonlinear effects on the test modes on turbulent plasmas. We determine the growth rate of drift modes as function of the statistical characteristics of the background turbulence. We show that trapping provides the physical mechanism for the inverse cascade observed in drift turbulence and for the zonal flow generation.

  14. Octupole shaps in nuclei, and some rotational consequences thereof

    SciTech Connect

    Nazarewicz, W.; Olanders, P.; Ragnarsson, I.; Dudek, J.; Leander, G.A.

    1984-01-01

    During the last years a large number of experimental papers presenting spectroscopic evidence for collective dipole and octupole deformations have appeared. Many theoretical attempts have been made to explain the observed spectroscopic properties in terms of stable octupole deformations. The coupling by the octupole potential, being proportional to Y/sub 30/, is strongest for those subshells for which ..delta..1 = 3. Therefore the tendency towards octupole deformation occurs just beyond closed shells where the high-j intruder subshells (N,1,j) lie very close to the normal parity subshells (N-1,1-3,j-3), i.e. for the particle numbers 34 (g/sub 9/2/-p/sub 3/2/), 56 (h/sub 11/2/-d/sub 5/2/). 9C (i/sub 13/2/-f/sub 7/2/) and 134 (j/sub 15/2/-g/sub 9/2/). Empirically, it is specifically for the particle numbers listed above that negative parity states are observed at relatively low energies in doubly even nuclei. From the different combinations of octupole-driving particle numbers four regions of likely candidates for octupole deformed equilibrium shapes emerge, namely the neutron-deficient nuclei with Z approx. = 90, N approx. = 134 (light actinides) and Z approx. = 34, N approx. = 34 (A approx. = 70) and the neutron-rich nuclei with Z approx. = 56, N approx. = 90 (heavy Ba) and Z approx. = 34, N/sup 56/ (A approx. = 90). In our calculations we searched for octupole unstable nuclei in these four mass regions. The Strutinsky method with the deformed Woods-Saxon potential was employed. The macroscopic part consists of a finite-range liquid drop energy, where both the surface and Coulomb terms contain a diffuseness correction.

  15. High-accuracy optical clock based on the octupole transition in 171Yb+.

    PubMed

    Huntemann, N; Okhapkin, M; Lipphardt, B; Weyers, S; Tamm, Chr; Peik, E

    2012-03-01

    We experimentally investigate an optical frequency standard based on the 467 nm (642 THz) electric-octupole reference transition (2)S(1/2)(F=0)→(2)F(7/2)(F=3) in a single trapped (171)Yb(+) ion. The extraordinary features of this transition result from the long natural lifetime and from the 4f(13)6s(2) configuration of the upper state. The electric-quadrupole moment of the (2)F(7/2) state is measured as -0.041(5)ea(0)(2), where e is the elementary charge and a(0) the Bohr radius. We also obtain information on the differential scalar and tensorial components of the static polarizability and of the probe-light-induced ac Stark shift of the octupole transition. With a real-time extrapolation scheme that eliminates this shift, the unperturbed transition frequency is realized with a fractional uncertainty of 7.1×10(-17). The frequency is measured as 642 121 496 772 645.15(52) Hz. PMID:22463621

  16. High-Accuracy Optical Clock Based on the Octupole Transition in Yb+171

    NASA Astrophysics Data System (ADS)

    Huntemann, N.; Okhapkin, M.; Lipphardt, B.; Weyers, S.; Tamm, Chr.; Peik, E.

    2012-03-01

    We experimentally investigate an optical frequency standard based on the 467 nm (642 THz) electric-octupole reference transition S1/22(F=0)→F7/22(F=3) in a single trapped Yb+171 ion. The extraordinary features of this transition result from the long natural lifetime and from the 4f136s2 configuration of the upper state. The electric-quadrupole moment of the F7/22 state is measured as -0.041(5)ea02, where e is the elementary charge and a0 the Bohr radius. We also obtain information on the differential scalar and tensorial components of the static polarizability and of the probe-light-induced ac Stark shift of the octupole transition. With a real-time extrapolation scheme that eliminates this shift, the unperturbed transition frequency is realized with a fractional uncertainty of 7.1×10-17. The frequency is measured as 642 121 496 772 645.15(52) Hz.

  17. Experimental progress with novel surface electrode ion trap structures for quantum information processing

    NASA Astrophysics Data System (ADS)

    Clark, Craig; Blain, Matthew; Benito, Francisco; Chou, Chin-Wen; Descour, Mike; Ellis, Rob; Haltli, Ray; Heller, Edwin; Kemme, Shanalyn; Sterk, Jon; Tabakov, Boyan; Tigges, Chris; Maunz, Peter; Stick, Daniel

    2013-05-01

    Segmented surface electrode ion traps are one of the most mature platforms among candidates for scalable quantum information processing. In this poster, an overview of current results from four specific projects will be presented. Two projects involve increased light collection from trapped ion for state detection and/or remote entangling of distant ions. The first involves cavity integration into a linear surface trap, and the second, involves integration of diffractive optical elements into a linear surface trap for increased light collection. Another project involves a trap with a ring geometry which could be used to trap long chains of equally spaced ions. Finally, we report on initial testing of a trap structure with vastly improved in-plane optical access. In this structure in-plane beams can be focused to less than 8 microns while keeping a distance of at least 5 beam radii to the trap structure. Along with these projects other relevant progress from Sandia National Laboratory's ion trap group will be presented. This work was supported by Sandia's Laboratory Directed Research and Development (LDRD) and the Intelligence Advanced Research Projects Activity (IARPA). Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the US Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

  18. Two-phonon octupole excitation in {sup 146}Gd

    SciTech Connect

    Caballero, L.; Rubio, B.; Nacher, E.; Kleinheinz, P.; Yates, S. W.; Algora, A.; Dewald, A.; Fitzler, A.; Jolie, J.; Linnemann, A.; Moeller, O.; Gadea, A.; Julin, R.; Piiparinen, M.; Lunardi, S.; Menegazzo, R.; Blomqvist, J.

    2010-03-15

    Based on experimental evidence from the {sup 144}Sm({alpha},2n) reaction, the 3484.7-keV 6{sup +} state in {sup 146}Gd is identified as the highest-spin member of the 3{sup -} x 3{sup -} two-phonon octupole quartet. A previously unknown {gamma} line of 1905.8 keV and E3 character feeding the 3{sup -} octupole state has been observed. These results represent the first observation of a 6{sup +}->3{sup -}->0{sup +} cascade of two E3 transitions in an even-even nucleus and provide strong support for the interpretation of the 6{sup +} state as a two-phonon octupole excitation.

  19. Ion trap array mass analyzer: structure and performance.

    PubMed

    Li, Xiaoxu; Jiang, Gongyu; Luo, Chan; Xu, Fuxing; Wang, Yuanyuan; Ding, Li; Ding, Chuan-Fan

    2009-06-15

    An ion trap array (ITA) mass analyzer--a novel ion trap mass analyzer with multiple ion trapping and analyzing channels--was designed and constructed. Its property and performance were investigated and reported in this paper. The ITA was built with several planar electrodes including two parallel printed circuit board (PCB) plates. Each PCB plate was fabricated to several identical rectangular electric strips based on normal PCB fabrication technology and was placed symmetrically to those on the opposite plate. There is no electrode between any two adjacent strips. Every strip was supplied with an rf voltage while the polarity of the voltage applied to the adjacent two strips was opposite. So the electric potential at the central plane between two adjacent strips is zero. Multiple identical electric field regions that contain the dominant quadrupole plus some other high-order fields were produced between the two PCB plates. The multiple identical electric field regions will have the property of ion trapping, ion storage, and mass analysis functions. So an ITA could work as multiple ion trap mass analyzers. It could perform multiple sample ion storage, mass-selected ion isolation, ion ejection, and mass analysis simultaneously. The ITA was operated at both "digital ion trap mode" and "conventional rf mode" experimentally. A preliminary mass spectrum has been carried out in one of the ion trap channels, and it shows a mass resolution of over 1000. Additional functions such as mass-selected ion isolation and mass-selected ion ejection have also been tested. Furthermore, the ITA has a small size and very low cost. An ITA with four channels is less than 30 cm(3) in total volume, and it shows a great promise for the miniaturization of the whole mass spectrometer instrument and high-throughput mass analysis. PMID:19441854

  20. Precise rainbow trapping for low-frequency acoustic waves with micro Mie resonance-based structures

    NASA Astrophysics Data System (ADS)

    Zhou, Chen; Yuan, Baoguo; Cheng, Ying; Liu, Xiaojun

    2016-02-01

    We have realized the acoustic rainbow trapping in the low frequency region (200-500 Hz) through micro Mie resonance-based structures. The structure has eight channels with a high refractive index obtained by coiling space, that can excite strong interactions with incident waves and support various orders of multipoles due to the Mie resonances of the microstructure. By utilizing the structure, the precise spatial modulation of the acoustic wave is demonstrated both theoretically and experimentally. The effect of trapping broadband acoustic waves and spatially separating different frequency components are ascribed to the monopolar Mie resonances of the structures. The trapping frequency is derived and the trapping positions can be tuned arbitrarily. With enhanced wave-structure interactions and tailored frequency responses, such micro structures show precise spectral-spatial control of acoustic waves and open a diverse venue for high performance acoustic wave detection, sensing, filtering, and a nondestructive test.

  1. Surface ion trap structures with excellent optical access for quantum information processing

    NASA Astrophysics Data System (ADS)

    Maunz, P.; Blain, M.; Benito, F.; Chou, C.; Clark, C.; Descour, M.; Ellis, R.; Haltli, R.; Heller, E.; Kemme, S.; Sterk, J.; Tabakov, B.; Tigges, C.; Stick, D.

    2013-05-01

    Microfabricated surface electrode ion traps are necessary for the advancement of trapped ion quantum information processing as it offers a scalable way for realizing complex trap structures capable of storing and controlling many ions. The most promising way of performing two-qubit quantum gates in a chain of trapped ions is to focus laser beams on individual ions of the chain to drive gates. However, in surface ion traps the close proximity of the ions to the surface and the size of the chips usually cannot accommodate the tightly focused laser beams necessary to address individual ions parallel to the chip surface. Here we present a surface electrode ion trap monolithically fabricated in standard silicon technology that implements a linear quadrupole trap on a bowtie shaped chip with a narrow section that is only 1.2 mm wide. Laser beams parallel to the surface can be focused down to a waist of 4 μm with enough separation from the trap chip to prevent light scattering. The trap structure incorporates two Y-junctions for reordering ions and is optimized for quantum information processing. This work was supported by the Intelligence Advanced Research Projects Activity (IARPA). Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the US Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

  2. Comparison of plume structures of carbon dioxide emitted from different mosquito traps.

    PubMed

    Cooperband, Miriam F; Cardé, Ring T

    2006-03-01

    A large field wind tunnel was used to compare four types of CO2-baited mosquito traps. This study compared the plume structure and concentration of CO2 emitted by each trap, flow of suction into the trapping systems, flow of CO2 being released, trap shape and configuration, differences in visual appearance, and differences in temperature and humidity of emissions at the source of CO2 compared to ambient air. The structure of the CO2 plumes emitted by each trap differed considerably. All four plumes were turbulent, causing the concentration of CO2 within several metres of the source to attenuate to between 375 and 875 p.p.m. The Encephalitis Virus Surveillance (EVS) trap emitted concentrations of CO2 exceeding 20,000 p.p.m., the detection limits of our equipment, whereas the Mosquito Magnet Freedom (MMF), Mosquito Magnet Liberty (MML) and Mosquito Magnet X (MMX) traps released CO2 at peaks of about 3500, 7200 and 8700 p.p.m., respectively. The MMX trap produced the greatest air velocity at both the suction inlet and CO2 outlet, followed by the MMF, MML and the EVS traps, respectively. PMID:16608485

  3. Perfect light trapping in mid-IR using patterned ZnO structures (Presentation Recording)

    NASA Astrophysics Data System (ADS)

    Vangala, Shivashankar R.; Nader, Nima; Cleary, Justin W.; Guo, Junpeng; Leedy, Kevin D.; Hendrickson, Joshua R.

    2015-09-01

    Plasmonic assisted mid-IR light trapping using 1D grating structures patterned in Ga-ZnO is demonstrated. FDTD simulations of these structures with proper grating period and depth show the light trapping into a resonant mode resulting in a close to 100% reflection dip in the 4-8 µm wavelength regime. The 1D grating structures of different periods are fabricated using standard photolithography followed by etching. The resonant reflection dips in the experimentally measured spectra well agree with the FDTD simulation, exhibiting light trapping in the mid-IR as predicted.

  4. First Atomic Electric Dipole Moment Limit Derived from an Octupole-Deformed Nucleus

    NASA Astrophysics Data System (ADS)

    Parker, Richard; Bishof, Michael; Kalita, Mukut; Lemke, Nathan; Dietrich, Matt; Bailey, Kevin; Greene, John; Holt, Roy; Korsch, Wolfgang; Lu, Zheng-Tian; Mueller, Peter; O'Connor, T. P.; Singh, Jaideep

    2015-05-01

    Ra-225 (half-life = 15 d, nuclear spin = 1/2) is a promising isotope for a measurement of the EDM of a diamagnetic atom. Due to its large nuclear octupole deformation and high atomic mass, the EDM sensitivity of Ra-225 is expected to be 2-3 orders of magnitude larger than that of Hg-199. We demonstrate an efficient multiple-stage apparatus in which radium atoms are first loaded into a MOT, then transferred into a movable optical-dipole trap (ODT) that carries the atoms over 1 m to a magnetically-shielded science chamber, loaded into a standing-wave ODT, polarized, and then allowed to precess in magnetic and electric fields. We will discuss our first measurement of the EDM of Ra-225, as well as plans for future improvements. This work is supported by DOE, Office of Nuclear Physics (DE-AC02-06CH11357).

  5. Particle trapping: A key requisite of structure formation and stability of Vlasov–Poisson plasmas

    SciTech Connect

    Schamel, Hans

    2015-04-15

    Particle trapping is shown to control the existence of undamped coherent structures in Vlasov–Poisson plasmas and thereby affects the onset of plasma instability beyond the realm of linear Landau theory.

  6. Octupole strength in the neutron-rich calcium isotopes

    NASA Astrophysics Data System (ADS)

    Riley, L. A.; McPherson, D. M.; Agiorgousis, M. L.; Baugher, T. R.; Bazin, D.; Bowry, M.; Cottle, P. D.; DeVone, F. G.; Gade, A.; Glowacki, M. T.; Gregory, S. D.; Haldeman, E. B.; Kemper, K. W.; Lunderberg, E.; Noji, S.; Recchia, F.; Sadler, B. V.; Scott, M.; Weisshaar, D.; Zegers, R. G. T.

    2016-04-01

    Low-lying excited states of the neutron-rich calcium isotopes Ca-5248 have been studied via γ -ray spectroscopy following inverse-kinematics proton scattering on a liquid hydrogen target using the GRETINA γ -ray tracking array. The energies and strengths of the octupole states in these isotopes are remarkably constant, indicating that these states are dominated by proton excitations.

  7. Trapping indirect excitons in a GaAs quantum-well structure with a diamond-shaped electrostatic trap.

    PubMed

    High, A A; Thomas, A K; Grosso, G; Remeika, M; Hammack, A T; Meyertholen, A D; Fogler, M M; Butov, L V; Hanson, M; Gossard, A C

    2009-08-21

    We report on the principle and realization of a new trap for excitons--the diamond electrostatic trap--which uses a single electrode to create a confining potential for excitons. We also create elevated diamond traps which permit evaporative cooling of the exciton gas. We observe the collection of excitons towards the trap center with increasing exciton density. This effect is due to screening of disorder in the trap by the excitons. As a result, the diamond trap behaves as a smooth parabolic potential which realizes a cold and dense exciton gas at the trap center. PMID:19792761

  8. Highly Efficient Light-Trapping Structure Design Inspired By Natural Evolution

    PubMed Central

    Wang, Chen; Yu, Shuangcheng; Chen, Wei; Sun, Cheng

    2013-01-01

    Recent advances in nanophotonic light trapping open up the new gateway to enhance the absorption of solar energy beyond the so called Yablonovitch Limit. It addresses the urgent needs in developing low cost thin-film solar photovoltaic technologies. However, current design strategy mainly relies on the parametric approach that is subject to the predefined topological design concepts based on physical intuition. Incapable of dealing with the topological variation severely constrains the design of optimal light trapping structure. Inspired by natural evolution process, here we report a design framework driven by topology optimization based on genetic algorithms to achieve a highly efficient light trapping structure. It has been demonstrated that the optimal light trapping structures obtained in this study exhibit more than 3-fold increase over the Yablonovitch Limit with the broadband absorption efficiency of 48.1%, beyond the reach of intuitive designs. PMID:23289067

  9. Structure of Two-Dimensional Plasma Crystals in Anharmonic Penning Traps

    NASA Astrophysics Data System (ADS)

    Dubin, D. H. E.

    2013-10-01

    In several recent experiments charged particles have been trapped and cooled in two-dimensional (2D) crystalline configurations using a Penning trap. Usually in such traps the applied trap potential is harmonic (i.e. depending quadratically on position), and consequently the 2D crystal structure is nonuniform and riddled with defects. This poster derives a closed-form analytic expression for the density per unit area of the 2D crystal when an arbitrary anharmonic trap potential is employed, expressed as a multipole expansion. This expression is used to find the optimum potential, with a given number of multipoles, for trapping a plasma crystal with the most uniform possible density per unit area. Image charge effects are included to lowest order in (plasma size)/(electrode radius). Minimum energy states in such an optimized trap potential (including only quadrupole and octopole terms) are evaluated numerically and the resulting crystals are shown to be defect-free over the central region where the density is most nearly uniform. The poster also explores using an l = 3 rotating wall trap potential in order to produce near-perfect crystals with triangular boundaries and no defects. Supported by PHY-0903877 and DE-SC0002541.

  10. Coupling of nuclear quadrupole and octupole degrees of freedom in an angular momentum dependent potential of two deformation variables

    SciTech Connect

    Minkov, N.; Yotov, P.; Drenska, S.; Scheid, W.; Bonatsos, Dennis; Lenis, D.; Petrellis, D.

    2006-04-26

    We propose a collective rotation-vibration Hamiltonian of nuclei in which the axial quadrupole {beta}2 and octupole {beta}3 variables are coupled through the centrifugal interaction. We consider that the system oscillates between positive and negative {beta}3-values by rounding a potential core in the ({beta}2,{beta}3)- space. We examine the effect of the 'rounding' in the structure of the spectrum.

  11. Structured interfaces for flexural waves - trapped modes and transmission resonances

    NASA Astrophysics Data System (ADS)

    Haslinger, S. G.; McPhedran, R. C.; Movchan, N. V.; Movchan, A. B.

    2013-07-01

    The article combines the analytical models of scattering and Bloch waves for a stack of periodic gratings in an infinite elastic plate. The waves represent flexural deflections of the plate governed by a fourth-order partial differential equation. The emphasis is on the analysis of trapped modes and transmission resonances for different configurations of the grating stack and physical parameters of the flexural waves. Special attention is given to the phenomenon of Elasto-Dynamically Inhibited Transmission (EDIT). The analytical model is supplemented with comprehensive numerical examples.

  12. Shallow seismic trapping structure in the San Jacinto fault zone near Anza, California

    NASA Astrophysics Data System (ADS)

    Lewis, M. A.; Peng, Z.; Ben-Zion, Y.; Vernon, F. L.

    2005-09-01

    We analyse fault zone trapped waves, generated by ~500 small earthquakes, for high-resolution imaging of the subsurface structure of the Coyote Creek, Clark Valley and Buck Ridge branches of the San Jacinto fault zone near Anza, California. Based on a small number of selected trapped waves within this data set, a previous study concluded on the existence of a low-velocity waveguide that is continuous to a depth of 15-20 km. In contrast, our systematic analysis of the larger data set indicates a shallow trapping structure that extends only to a depth of 3-5 km. This is based on the following lines of evidence. (1) Earthquakes clearly outside these fault branches generate fault zone trapped waves that are recorded by stations within the fault zones. (2) A traveltime analysis of the difference between the direct S arrivals and trapped wave groups shows no systematic increase (moveout) with increasing hypocentral distance or event depth. Estimates based on the observed average moveout values indicate that the propagation distances within the low-velocity fault zone layers are 3-5 km. (3) Quantitative waveform inversions of trapped wave data indicate similar short propagation distances within the low-velocity fault zone layers. The results are compatible with recent inferences on shallow trapping structures along several other faults and rupture zones. The waveform inversions also indicate that the shallow trapping structures are offset to the northeast from the surface trace of each fault branch. This may result from a preferred propagation direction of large earthquake ruptures on the San Jacinto fault.

  13. Hyperfine-induced electric dipole contributions to the electric octupole and magnetic quadrupole atomic clock transitions

    NASA Astrophysics Data System (ADS)

    Dzuba, V. A.; Flambaum, V. V.

    2016-05-01

    Hyperfine-induced electric dipole contributions may significantly increase probabilities of otherwise very weak electric octupole and magnetic quadrupole atomic clock transitions (e.g., transitions between s and f electron orbitals). These transitions can be used for exceptionally accurate atomic clocks, quantum information processing, and the search for dark matter. They are very sensitive to new physics beyond the standard model, such as temporal variation of the fine-structure constant, the Lorentz invariance, and Einstein equivalence principle violation. We formulate conditions under which the hyperfine-induced electric dipole contribution dominates and perform calculations of the hyperfine structure and E3, M2 and the hyperfine-induced E1 transition rates for a large number of atoms and ions of experimental interest. Due to the hyperfine quenching the electric octupole clock transition in +173Yb is 2 orders of magnitude stronger than that in currently used +171Yb. Some enhancement is found in 13+143Nd, 14+149Pm, 14+147Sm, and 15+147Sm ions.

  14. Modeling of metal-ferroelectric-insulator-semiconductor structure considering the effects of interface traps

    NASA Astrophysics Data System (ADS)

    Sun, Jing; Shi, Xiao Rong; Zheng, Xue Jun; Tian, Li; Zhu, Zhe

    2015-06-01

    An improved model, in which the interface traps effects are considered, is developed by combining with quantum mechanical model, dipole switching theory and silicon physics of metal-oxide-semiconductor structure to describe the electrical properties of metal-ferroelectric-insulator-semiconductor (MFIS) structure. Using the model, the effects of the interface traps on the surface potential (ϕSi) of the semiconductor, the low frequency (LF) capacitance-voltage (C-V) characteristics and memory window of MFIS structure are simulated, and the results show that the ϕSi- V and LF C-V curves are shifted toward the positive-voltage direction and the memory window become worse as the density of the interface trap states increases. This paper is expected to provide some guidance to the design and performance improvement of MFIS structure devices. In addition, the improved model can be integrated into electronic design automation (EDA) software for circuit simulation.

  15. Possible ground-state octupole deformation in /sup 229/Pa

    SciTech Connect

    Ahmad, I.; Gindler, J.E.; Betts, R.R.; Chasman, R.R.; Friedman, A.M.

    1982-12-13

    Evidence is presented for the occurrence of a (5/2)/sup + -/ parity doublet as the ground state of /sup 229/Pa, in agreement with a previous theoretical prediction. The doublet splitting energy is measured to be 0.22 +- 0.05 keV. The relation of this doublet to ground-state octupole deformation is discussed. .ID LV2109 .PG 1762 1764

  16. Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations

    SciTech Connect

    Zhang, Xinyu; Garimella, Venkata BS; Prost, Spencer A.; Webb, Ian K.; Chen, Tsung-Chi; Tang, Keqi; Tolmachev, Aleksey V.; Norheim, Randolph V.; Baker, Erin Shammel; Anderson, Gordon A.; Ibrahim, Yehia M.; Smith, Richard D.

    2015-06-16

    A structure for lossless ion manipulation (SLIM) module was constructed with electrode arrays patterned on a pair of parallel printed circuit boards (PCB) separated by 5 mm and utilized to investigate capabilities for ion trapping at 4 Torr. Positive ions were confined by application of RF having alternating phases on a series of inner rung electrodes and by positive DC potentials on surrounding guard electrodes on each PCB. An axial DC field was also introduced by stepwise varying the DC potential of the inner rung electrodes so as to control the ion transport and accumulation inside the ion trap. We show that ions could be trapped and accumulated with 100% efficiency, stored for at least 5 hours with no losses, and could be rapidly ejected from the SLIM trap.

  17. Stability and structure of an anisotropically trapped dipolar Bose-Einstein condensate: Angular and linear rotons

    NASA Astrophysics Data System (ADS)

    Martin, A. D.; Blakie, P. B.

    2012-11-01

    We study theoretically Bose-Einstein condensates with polarized dipolar interactions in anisotropic traps. We map the parameter space by varying the trap frequencies and dipolar interaction strengths and find an irregular-shaped region of parameter space in which density-oscillating condensate states occur, with maximum density away from the trap center. These density-oscillating states may be biconcave (red-blood-cell-shaped), or have two or four peaks. For all trap frequencies, the condensate becomes unstable to collapse for sufficiently large dipole interaction strength. The collapse coincides with the softening of an elementary excitation. When the condensate mode is density oscillating, the character of the softening excitation is related to the structure of the condensate. We classify these excitations by linear and angular characteristics. We also find excited solutions to the Gross-Pitaevskii equation, which are always unstable.

  18. Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations.

    PubMed

    Zhang, Xinyu; Garimella, Sandilya V B; Prost, Spencer A; Webb, Ian K; Chen, Tsung-Chi; Tang, Keqi; Tolmachev, Aleksey V; Norheim, Randolph V; Baker, Erin S; Anderson, Gordon A; Ibrahim, Yehia M; Smith, Richard D

    2015-06-16

    A new Structures for Lossless Ion Manipulations (SLIM) module, having electrode arrays patterned on a pair of parallel printed circuit boards (PCB), was constructed and utilized to investigate capabilities for ion trapping at a pressure of 4 Torr. Positive ions were confined by application of RF voltages to a series of inner rung electrodes with alternating phase on adjacent electrodes, in conjunction with positive DC potentials on surrounding guard electrodes on each PCB. An axial DC field was also introduced by stepwise varying the DC potentials applied to the inner rung electrodes to control the ion transport and accumulation inside the ion trapping region. We show that ions can be trapped and accumulated with up to 100% efficiency, stored for at least 5 h with no significant losses, and then could be rapidly ejected from the SLIM trap. The present results provide a foundation for the development of much more complex SLIM devices that facilitate extended ion manipulations. PMID:25971536

  19. Length dependent folding kinetics of phenylacetylene oligomers: Structural characterization of a kinetic trap

    NASA Astrophysics Data System (ADS)

    Elmer, Sidney P.; Pande, Vijay S.

    2005-03-01

    Using simulation to study the folding kinetics of 20-mer poly-phenylacetylene (pPA) oligomers, we find a long time scale trapped kinetic phase in the cumulative folding time distribution. This is demonstrated using molecular dynamics to simulate an ensemble of over 100 folding trajectories. The simulation data are fit to a four-state kinetic model which includes the typical folded and unfolded states, along with an intermediate state, and most surprisingly, a kinetically trapped state. Topologically diverse conformations reminiscent of α helices, β turns, and sheets in proteins are observed, along with unique structures in the form of knots. The nonhelical conformations are implicated, on the basis of structural correlations to kinetic parameters, to contribute to the trapped kinetic behavior. The strong solvophobic forces which mediate the folding process and produce a stable helical folded state also serve to overstabilize the nonhelical conformations, ultimately trapping them. From our simulations, the folding time is predicted to be on the order of 2.5-12.5 μs in the presence of the trapped kinetic phase. The folding mechanism for these 20-mer chains is compared with the previously reported folding mechanism for the pPA 12-mer chains. A linear scaling relationship between the chain length and the mean first passage time is predicted in the absence of the trapped kinetic phase. We discuss the major implications of this discovery in the design of self-assembling nanostructures.

  20. Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations

    DOE PAGESBeta

    Chen, Tsung-Chi; Ibrahim, Yehia M.; Webb, Ian K.; Garimella, Sandilya V. B.; Zhang, Xing; Hamid, Ahmed M.; Deng, Liulin; Karnesky, William E.; Prost, Spencer A.; Sandoval, Jeremy A.; et al

    2016-01-11

    The integration of ion mobility spectrometry (IMS) with mass spectrometry (MS) and the ability to trap ions in IMS-MS measurements is of great importance for performing reactions, accumulating ions, and increasing analytical measurement sensitivity. The development of Structures for Lossless Ion Manipulations (SLIM) offers the potential for ion manipulations in a more reliable and cost-effective manner, while opening opportunities for much more complex sequences of manipulations. Here, we demonstrate an ion separation and trapping module and a method based upon SLIM that consists of a linear mobility ion drift region, a switch/tee and a trapping region that allows the isolationmore » and accumulation of mobility-separated species. The operation and optimization of the SLIM switch/tee and trap are described and demonstrated for the enrichment of the low abundance ions. Lastly, we observed a linear increase in ion intensity with the number of trapping/accumulation events using the SLIM trap, illustrating its potential for enhancing the sensitivity of low abundance or targeted species.« less

  1. Mechanism of DNA Trapping in Nanoporous Structures during Asymmetric Pulsed-Field Electrophoresis

    NASA Astrophysics Data System (ADS)

    Zhou, Ya; Harrison, D. Jed

    2014-03-01

    DNA molecules (>100kbp) are trapped in separation sieves when high electric fields are applied in pulsed field electrophoresis, seriously limiting the speed of separation. Using crystalline particle arrays, to generate interstitial pores for molecular sieving, allows higher electric fields than in gels, (e.g 40 vs 5 V/cm), however trapping still limits the field strength. Using reverse pulses, which release DNA from being fully-stretched, allows higher fields (140 V/cm). We investigate the trapping mechanism of individual DNA molecules in ordered nanoporous structures. Two prerequisites for trapping are revealed by the dynamics of single trapped DNA, hernia formation and fully-stretched U/J shapes. Fully stretched DNA has longer unhooking times than expected by simple models. We propose a dielectrophoretic (DEP) force reduces the mobility of segments at the apex of the U or J, where field gradients are highest, based on simulations. A modified model for unhooking time is obtained after the DEP force is introduced. The new model explains the unhooking time data by predicting an infinite trapping time when the ratio of arm length differences (of the U or J) to molecule length Δx / L < β . β is a DEP parameter that is found to strongly increase with electric field. The work was supported by grant from Natural Sciences and Engineering Research Council of Canada (NSERC) and the National Institute for Nanotechnology (NINT).

  2. Advances in ion trap mass spectrometry: Photodissociation as a tool for structural elucidation

    SciTech Connect

    Stephenson, J.L. Jr.; Booth, M.M.; Eyler, J.R.; Yost, R.A.

    1995-12-01

    Photo-induced dissociation (PID) is the next most frequently used method (after collisional activation) for activation of Polyatomic ions in tandem mass spectrometry. The range of internal energies present after the photon absorption process are much narrower than those obtained with collisional energy transfer. Therefore, the usefulness of PID for the study of ion structures is greatly enhanced. The long storage times and instrumental configuration of the ion trap mass spectrometer are ideally suited for photodissociation experiments. This presentation will focus on both the fundamental and analytical applications of CO{sub 2} lasers in conjunction with ion trap mass spectrometry. The first portion of this talk will examine the fundamental issues of wavelength dependence, chemical kinetics, photoabsorption cross section, and collisional effects on photodissociation efficiency. The second half of this presentation will look at novel instrumentation for electrospray/ion trap mass spectrometry, with the concurrent development of photodissociation as a tool for structural elucidation of organic compounds and antibiotics.

  3. Novel Trapping and Scattering of Light in Resonant Nanophotonic Structures

    NASA Astrophysics Data System (ADS)

    Hsu, Chia Wei

    Nanophotonic structures provide unique ways to control light and alter its behaviors in ways not possible in macroscopic structures. In this thesis, we explore novel behaviors of light created by nanophotonic structures, with a common theme on resonance effects. The first half of the thesis focuses on a peculiar type of electromagnetic resonance, where the resonance lifetime diverges to infinity. These states, called bound states in the continuum, remain localized in space even though their frequency lie within a continuum of extended modes. We find such states in photonic crystal slabs and the surface of bulk photonic crystals. We show the conditions necessary for them to exist, and provide the first experimental observation of these unusual states. We also show that these states have a topological nature, with conserved and quantized topological charges that govern their generation, evolution, and annihilation. The second half of the thesis concerns light scattering from resonant nanophotonic structures, where resonances can enhance or suppress scattering at particular wavelengths and angles. We show that multiple resonances in one nanostructure and in the same multipole channel generally lead to a scattering dark state where the structure becomes transparent. Based on the coherent interference from multiple scatterers, we show there are geometries that can achieve a sharp structural color where the hue, saturation, and brightness are all viewing-angle independent. We also invent a new type of transparent display based on wavelength-selective light scattering from nanostructures.

  4. Structural, bioinformatic, and in vivo analyses of two Treponema pallidum lipoproteins reveal a unique TRAP transporter

    PubMed Central

    Deka, Ranjit K.; Brautigam, Chad A.; Goldberg, Martin; Schuck, Peter; Tomchick, Diana R.; Norgard, Michael V.

    2012-01-01

    Treponema pallidum, the bacterial agent of syphilis, is predicted to encode one tripartite ATP- independent periplasmic transporter (TRAP-T). TRAP-Ts typically employ a periplasmic substrate-binding protein (SBP) to deliver the cognate ligand to the transmembrane symporter. Herein, we demonstrate that the genes encoding the putative TRAP-T components from T. pallidum, tp0957 (the SBP) and tp0958 (the symporter) are in an operon with an uncharacterized third gene, tp0956. We determined the crystal structure of recombinant Tp0956; the protein is trimeric and perforated by a pore. Part of Tp0956 forms an assembly similar to those of “tetratricopeptide repeat” (TPR) motifs. The crystal structure of recombinant Tp0957 was also determined; like the SBPs of other TRAP-Ts, there are two lobes separated by a cleft. In these other SBPs, the cleft binds a negatively charged ligand. However, the cleft of Tp0957 has a strikingly hydrophobic chemical composition, indicating that its ligand may be substantially different and likely hydrophobic. Analytical ultracentrifugation of the recombinant versions of Tp0956 and Tp0957 established that these proteins associate avidly. This unprecedented interaction was confirmed for the native molecules using in vivo cross-linking experiments. Finally, bioinformatic analyses suggested that this transporter exemplifies a new subfamily of TPR-protein associated TRAP transporters (TPATs) that require the action of a TPR-containing accessory protein for the periplasmic transport of a potentially hydrophobic ligand(s). PMID:22306465

  5. Structural, Bioinformatic, and In Vivo Analyses of Two Treponema pallidum Lipoproteins Reveal a Unique TRAP Transporter

    SciTech Connect

    Deka, Ranjit K.; Brautigam, Chad A.; Goldberg, Martin; Schuck, Peter; Tomchick, Diana R.; Norgard, Michael V.

    2012-05-25

    Treponema pallidum, the bacterial agent of syphilis, is predicted to encode one tripartite ATP-independent periplasmic transporter (TRAP-T). TRAP-Ts typically employ a periplasmic substrate-binding protein (SBP) to deliver the cognate ligand to the transmembrane symporter. Herein, we demonstrate that the genes encoding the putative TRAP-T components from T. pallidum, tp0957 (the SBP), and tp0958 (the symporter), are in an operon with an uncharacterized third gene, tp0956. We determined the crystal structure of recombinant Tp0956; the protein is trimeric and perforated by a pore. Part of Tp0956 forms an assembly similar to those of 'tetratricopeptide repeat' (TPR) motifs. The crystal structure of recombinant Tp0957 was also determined; like the SBPs of other TRAP-Ts, there are two lobes separated by a cleft. In these other SBPs, the cleft binds a negatively charged ligand. However, the cleft of Tp0957 has a strikingly hydrophobic chemical composition, indicating that its ligand may be substantially different and likely hydrophobic. Analytical ultracentrifugation of the recombinant versions of Tp0956 and Tp0957 established that these proteins associate avidly. This unprecedented interaction was confirmed for the native molecules using in vivo cross-linking experiments. Finally, bioinformatic analyses suggested that this transporter exemplifies a new subfamily of TPATs (TPR-protein-associated TRAP-Ts) that require the action of a TPR-containing accessory protein for the periplasmic transport of a potentially hydrophobic ligand(s).

  6. Single-Molecule Vibrational Spectroscopy Adds Structural Resolution to the Optical Trap

    PubMed Central

    Ganim, Ziad

    2013-01-01

    The ability to apply forces on single molecules with an optical trap is combined with the endogenous structural resolution of Raman spectroscopy in an article in this issue, and applied to measure the Raman spectrum of ds-DNA during force-extension. PMID:23332052

  7. Interplay between octupole and quasiparticle excitations in {sup 178}Hg and {sup 180}Hg

    SciTech Connect

    Kondev, F. G.; Janssens, R. V. F.; Carpenter, M. P.; Abu Saleem, K.; Ahmad, I.; Alcorta, M.; Amro, H.; Bhattacharyya, P.; Brown, L. T.; Caggiano, J.

    2000-10-01

    Excited structures in the Z=80, {sup 178}Hg (N=98), and {sup 180}Hg (N=100) isotopes have been investigated with the Gammasphere spectrometer in conjunction with the recoil-decay tagging technique. The present data extend the previously known ground-state bands to higher spin and excitation energy. Negative parity bands with a complex decay towards the low spin states arising from both the prolate-deformed and the nearly spherical coexisting minima have been observed for the first time in both nuclei. It is shown that these sequences have characteristics in common with negative-parity bands in the heavier even-even Hg isotopes as well as in the Os and Pt isotones. These structures are interpreted as being associated at low spin with an octupole vibration which is crossed at moderate frequency by a shape driving, two-quasiproton excitation.

  8. Timing of structural development of oil traps in Gulf of Suez, Egypt

    SciTech Connect

    Chowdhary, L.R.; Shaheen, S.

    1988-01-01

    To date, more than 40 oil fields with an estimated 25billion bbl of oil in place have been discovered in the Gulf of Suez, Egypt. These oil accumulations are present both in the pre-graben and graben-fill cycles which are separated by Oligocene tectonic phase, hitherto considered to be responsible for differentiation and formation of oil traps. In the present study, the structural development of many oil traps is related to intra-Rudeis tectonic phase of late early Miocene age. Presence of an astructures. In other structures (Ras Bakr, Ras Gharib, Ras Fanar, Belayim Marine, S. July, Hurgada. Zeit Bay, etc), the exhumed pre-Miocene strata ranging in age from Paleozoic to Eocene (or even Precambrian basement as in Zeit Bay) are in unconformable contact with graben-fill deposits of middle Miocene age. Structural development of these structural-unconformity traps can be related to either Oligocene or intra-Rudeis tectonic phase. However, a study of the development of erosional profiles would favor an intra-Rudeis origin of these structures. A few structures with oil accumulations in grabenfill sandstone reservoirs, such as Morgan, W. Bakr, etc, were primarily formed following intra-Rudeis tectonic phase as a sedimentary drape and compaction structures over preexisting relief features.

  9. Dynamic interfacial trapping of flexural waves in structured plates

    PubMed Central

    Craster, R. V.; Movchan, A. B.; Movchan, N. V.; Jones, I. S.

    2016-01-01

    The paper presents new results on the localization and transmission of flexural waves in a structured plate containing a semi-infinite two-dimensional array of rigid pins. In particular, localized waves are identified and studied at the interface boundary between the homogeneous part of the flexural plate and the part occupied by rigid pins. A formal connection has been made with the dispersion properties of flexural Bloch waves in an infinite doubly periodic array of rigid pins. Special attention is given to regimes corresponding to standing waves of different types as well as Dirac-like points that may occur on the dispersion surfaces. A single half-grating problem, hitherto unreported in the literature, is also shown to bring interesting solutions. PMID:27118892

  10. Time-dependent evolution of radiation-induced interface traps in MOS structures

    SciTech Connect

    da Silva Junior, E.F.

    1988-01-01

    A detailed study of the dynamic processes of the interface traps in MOS structures after exposure to ionizing radiation or hot electrons is presented. Among the important results reported here, a two-peaked: interface trap distributor is shown to be characteristic in all the samples studied, and has been found to arise from a defect transformation process in which a peak located at {approximately}E{sub v} + 0.75 eV, which is the only peak observed immediately after irradiation, gradually converts into a second peak located at {approximately}E{sub v} + 0.35 eV. In general, the time evolution of the interface traps has been found to present a complex behavior involving three competing processes: defect generation, annealing and transformation. These processes depend strongly on the device's processing history and radiation treatments. The incorporation of impurities such as fluorine and chlorine into the oxide drastically affects the susceptibility of these MOS structures to ionizing radiation and hot electrons. If proper amounts of these impurities are present in the oxide, an improvement of about one order of magnitude may be obtained on the interface trap densities generated by ionizing radiation and hot electrons throughout the silicon bandgap. A model based on an intrinsic strain relaxation mechanism is proposed to explain most of the experimental results. The initial, post-irradiation density of interface traps has been found to be a key factor determining their subsequent long term dependence. Strong evidence will be presented which indicates that hot electron induced interface traps behave very similarly to those generated by ionizing radiation.

  11. High. beta. studies in the Wisconsin Toroidal Octupole

    SciTech Connect

    Halle, J. H.; Kellman, A.; Post, R. S.; Prager, S. C.; Strait, E. J.; Zarnstorff, M. C.

    1980-09-01

    A wide range of MHD stable high ..beta.. plasmas is produced in the Wisconsin Levitated Octupole. At or near the single fluid regime we obtain, in the bad curvature region, ..beta.. = nk(T/sub e/ + T/sub i/)8..pi../B/sup 2/ approx. = 8%, twice the theoretical single fluid ballooning instability limit of 4%. We also obtain stable plasmas at ..beta.. approx. = 35%, 9 times the theoretical limit, in a regime in which both finite ion gyroradius and gyroviscosity effects are important.

  12. Two-Phonon Octupole Excitation in 146Gd

    SciTech Connect

    Caballero, L.; Rubio, B.; Algora, A.; Nacher, E.; Kleinheinz, P.; Dewald, A.; Fitzler, A.; Jolie, J.; Linnemann, A.; Moeller, O.; Gadea, A.; Julin, R.; Piiparinen, M.; Lunardi, S.; Menegazzo, R.; Yates, S.W.

    2005-11-21

    The excited states in 146Gd have been re-investigated with the 144Sm({alpha},2n) reaction using a modern Ge {gamma}-ray array including a polarimeter. Amongst the non-yrast states populated in this reaction we have identified the aligned 6+ member of the two-phonon octupole quartet from the observation of the E3 branching to the one phonon 3- state. Our results represent the first observation of a 6+{yields}3-{yields}0+ E3 cascade in an even-even nucleus.

  13. Two-Phonon Octupole Excitation in 146Gd

    SciTech Connect

    Caballero, L.; Rubio, B.; Nacher, E.; Kleinheinz, P.; Algora, A.; Blomqvist, J.; Dewald, A.; Fitzler, A.; Jolie, J.; Linnemann, A.; Moeller, O.; Gadea, A.; Julin, R.; Piiparinen, M.; Lunardi, S.; Menegazzo, R.; Yates, S. W.

    2006-04-26

    The excited states in 146Gd have been re-investigated with the 144Sm({alpha},2n) reaction using a modern Ge {gamma}-ray array including a polarimeter. Amongst the non-yrast states populated in this reaction we have identified the aligned 6+ member of the two-phonon octupole quartet from the observation of the E3 branching to the one phonon 3- state. Our results represent the first observation of a 6+{yields}3-{yields}0+ E3 cascade in an even-even nucleus.

  14. Octupole deformation in sup 221 Fr; E1 transition rates

    SciTech Connect

    Liang, C.F.; Peghaire, A. ); Sheline, R.K. )

    1990-07-10

    Experimental data following the alpha decay of{sup 225}Ac are interpreted in terms of a spectroscopy in {sup 221}Fr consistent with octupole deformation. However, the measured E1 transition probabilities suggest that the low lying bands in {sup 221}Fr are considerably more mixed than in nuclei with slightly higher mass number. It is suggested that this mixing of states in {sup 221}Fr is indicative of the partial collapse of Nilsson-like orbitals into more degenerate shell model orbitals.

  15. A highly efficient light-trapping structure for thin-film silicon solar cells

    SciTech Connect

    Zhao, L.; Zuo, Y.H.; Zhou, C.L.; Li, H.L.; Diao, H.W.; Wang, W.J.

    2010-01-15

    A highly efficient light-trapping structure, consisting of a diffractive grating, a distributed Bragg reflector (DBR) and a metal reflector was proposed. As an example, the proposed light-trapping structure with an indium tin oxide (ITO) diffraction grating, an a-Si:H/ITO DBR and an Ag reflector was optimized by the simulation via rigorous coupled-wave analysis (RCWA) for a 2.0-{mu}m-thick c-Si solar cell with an optimized ITO front antireflection (AR) layer under the air mass 1.5 (AM1.5) solar illumination. The weighted absorptance under the AM1.5 solar spectrum (A{sub AM1.5}) of the solar cell can reach to 69%, if the DBR is composed of 4 pairs of a-Si:H/ITOs. If the number of a-Si:H/ITO pairs is up to 8, a larger A{sub AM1.5} of 72% can be obtained. In contrast, if the Ag reflector is not adopted, the combination of the optimized ITO diffraction grating and the 8-pair a-Si:H/ITO DBR can only result in an A{sub AM1.5} of 68%. As the reference, A{sub AM1.5} = 31% for the solar cell only with the optimized ITO front AR layer. So, the proposed structure can make the sunlight highly trapped in the solar cell. The adoption of the metal reflector is helpful to obtain highly efficient light-trapping effect with less number of DBR pairs, which makes that such light-trapping structure can be fabricated easily. (author)

  16. Structural evolution of the Permian-Triassic Cooper basin, Australia: Relation to hydrocarbon trap styles

    SciTech Connect

    Apak, S.N.; Stuart, W.J.; Lemon, N.M.; Wood, G.

    1997-04-01

    The structural and depositional history of the Cooper basin in eastern central Australia has revealed that the basin is a mildly compressional structural depression controlled by northwestrending and northeast-trending pre-Permian basement features. Pronounced pre-Permian compressions are indicated by northeast-trending major structures, the Gidgealpa-Merrimelia-Innamincka and Murteree-Nappacoongee trends. Detailed chronostratigraphic facies analysis, with closely spaced palynological control, of the Patchawarra Formation revealed that two pronounced phases of uplift occurred during the Sakmarian. The major intrabasin highs were rejuvenated during these tectonic events, as documented by crestal unconformities (middle and upper Patchawarra unconformities). Evidence of each event is dominantly tectonic in character, with similar depositional patterns over these highs related to each event. These events are also recognizable in midflank areas and basin margins with contemporaneous deposition in deeper parts of the basin. Results from this research show potential for future hydrocarbon discoveries within structural, stratigraphic, and structural/stratigraphic traps in the Cooper basin. Various trap styles are closely associated with faults, unconformities, and lateral facies changes. Lowside fault closures, onlap plays, and unconformity traps are expected to be well developed along intrabasinal highs, basin margins, and preexisting structures. The primary reservoir targets would be deltaic sequences comprising shoreline sandstones, distributary and delta-mouth bar deposits that may be well developed in synclinal areas, and flanks of intrabasin highs in the Copper basin.

  17. Secondary Fast Magnetoacoustic Waves Trapped in Randomly Structured Plasmas

    NASA Astrophysics Data System (ADS)

    Yuan, Ding; Li, Bo; Walsh, Robert W.

    2016-09-01

    Fast magnetoacoustic waves are an important tool for inferring parameters of the solar atmosphere. We numerically simulate the propagation of fast wave pulses in randomly structured plasmas that mimic the highly inhomogeneous solar corona. A network of secondary waves is formed by a series of partial reflections and transmissions. These secondary waves exhibit quasi-periodicities in both time and space. Since the temporal and spatial periods are related simply through the speed of the fast wave, we quantify the properties of secondary waves by examining the dependence of the average temporal period (\\bar{p}) on the initial pulse width (w 0) and studying the density contrast ({δ }ρ ) and correlation length (L c ) that characterize the randomness of the equilibrium density profiles. For small-amplitude pulses, {δ }ρ does not alter \\bar{p} significantly. Large-amplitude pulses, on the other hand, enhance the density contrast when {δ }ρ is small but have a smoothing effect when {δ }ρ is sufficiently large. We found that \\bar{p} scales linearly with L c and that the scaling factor is larger for a narrower pulse. However, in terms of the absolute values of \\bar{p}, broader pulses generate secondary waves with longer periods, and this effect is stronger in random plasmas with shorter correlation lengths. Secondary waves carry the signatures of both the leading wave pulse and the background plasma. Our study may find applications in magnetohydrodynamic seismology by exploiting the secondary waves detected in the dimming regions after coronal mass ejections or extreme ultraviolet waves.

  18. High-spin octupole yrast levels in {sup 216}Rn{sub 86}

    SciTech Connect

    Debray, M.E.; Davidson, J.; Davidson, M.; Kreiner, A. J.; Cardona, M. A.; Hojman, D.; Napoli, D.R.; De Angelis, G.; De Poli, M.; Gadea, A.; Lenzi, S.; Bazzacco, D.; Lunardi, S.; Rossi-Alvarez, C.; Ur, C.A.; Medina, N.

    2006-02-15

    The yrast level structure of {sup 216}Rn has been studied using in-beam spectroscopy {alpha}-{gamma}-{gamma} coincidence techniques through the {sup 208}Pb({sup 18}O, 2{alpha}2n) reaction in the 91-93 MeV energy range, using the 8{pi} GASP-ISIS spectrometer at Legnaro. The level scheme of {sup 216}Rn resulting from this study shows alternating parity bands only above a certain excitation energy. From this result, the lightest nucleus showing evidence of octupole collectivity at low spins is still {sup 216}Fr, thereby defining the lowest-mass corner for this kind of phenomenon as N{>=}129 and Z{>=}87.

  19. Disulfide Trapping for Modeling and Structure Determination of Receptor:Chemokine Complexes

    PubMed Central

    Kufareva, Irina; Gustavsson, Martin; Holden, Lauren G.; Qin, Ling; Zheng, Yi; Handel, Tracy M.

    2016-01-01

    Despite the recent breakthrough advances in GPCR crystallography, structure determination of protein-protein complexes involving chemokine receptors and their endogenous chemokine ligands remains challenging. Here we describe disulfide trapping, a methodology for generating irreversible covalent binary protein complexes from unbound protein partners by introducing two cysteine residues, one per interaction partner, at selected positions within their interaction interface. Disulfide trapping can serve at least two distinct purposes: (i) stabilization of the complex to assist structural studies, and/or (ii) determination of pairwise residue proximities to guide molecular modeling. Methods for characterization of disulfide-trapped complexes are described and evaluated in terms of throughput, sensitivity, and specificity towards the most energetically favorable cross-links. Due to abundance of native disulfide bonds at receptor:chemokine interfaces, disulfide trapping of their complexes can be associated with intramolecular disulfide shuffling and result in misfolding of the component proteins; because of this, evidence from several experiments is typically needed to firmly establish a positive disulfide crosslink. An optimal pipeline that maximizes throughput and minimizes time and costs by early triage of unsuccessful candidate constructs is proposed. PMID:26921956

  20. Cambrian-Ordovician Knox production in Ohio: Three case studies of structural-stratigraphic traps

    USGS Publications Warehouse

    Riley, R.A.; Wicks, J.; Thomas, Joan

    2002-01-01

    The Knox Dolomite (Cambrian-Ordovician) in Ohio consists of a mixed carbonate-siliciclastic sequence deposited in a tidal-flat to shallow-marine environment along a broad continental shelf. Knox hydrocarbon production occurs in porous sandstone and dolomite reservoirs in the Copper Ridge dolomite, Rose Run sandstone, and Beekmantown dolomite. In Ohio, historical Knox exploration and development have been focused on paleogeomorphic traps within the prolific Morrow Consolidated field, and more recently, within and adjacent to the Rose Run subcrop. Although these paleogeomorphic traps have yielded significant Knox production, structural and stratigraphic traps are being largely ignored. Three Knox-producing pools demonstrate structural and stratigraphic traps: the Birmingham-Erie pool in southern Erie and southwestern Lorain counties, the South Canaan pool in northern Wayne County, and the East Randolph pool in south-central Portage County. Enhanced porosity and permeability from fractures, as evident in the East Randolph pool, are also an underexplored mechanism for Knox hydrocarbon accumulation. An estimated 800 bcf of gas from undiscovered Knox resources makes the Knox one of the most attractive plays in the Appalachian basin.

  1. [Size structure, selectivity and specific composition of the catch in traps for marine fish in the Gulf of California].

    PubMed

    Nevárez-Martínez, Manuel O; Balmori-Ramírez, Alejandro; Miranda-Mier, Everardo; Santos-Molina, J Pablo; Méndez-Tenorio, Francisco J; Cervantes-Valle, Celio

    2008-09-01

    We analyzed the performance of three traps for marine fish between October 2005 and August 2006 in the Gulf of California, Mexico. The performance was measured as difference in selectivity, fish diversity, size structure and yield. The samples were collected with quadrangular traps 90 cm wide, 120 cm long and 50 cm high. Trap type 1 had a 5 x 5 cm mesh (type 2: 5 x 5 cm including a rear panel of 5 x 10 cm; trap 3: 5 x 10 cm). Most abundant in our traps were: Goldspotted sand bass (Paralabrax auroguttatus), Ocean whitefish (Caulolatilus princeps), Spotted sand bass (P. maculatofaciatus) and Bighead tilefish (C. affinis); there was no bycatch. The number offish per trap per haul decreased when mesh size was increased. We also observed a direct relationship between mesh size and average fish length. By comparing our traps with the authorized fishing gear (hooks-and-line) we found that the size structure is larger in traps. Traps with larger mesh size were more selective. Consequently, we recommend adding traps to hooks-and-line as authorized fishing gear in the small scale fisheries of the Sonora coast, Mexico. PMID:19419053

  2. Dynamic Structure Factor of an Optically Trapped Dipolar Bose—Einstein Condensate

    NASA Astrophysics Data System (ADS)

    Qi, Wei; Liang, Zhao-Xin; Zhang, Zhi-Dong

    2014-02-01

    Motivated by the recent experimental achievements in using the Bragg spectroscopy to measure the excitation spectrum of an ultra-cold atomic system with long-range interactions, we investigate the dynamic structure factor of a cigar-shaped dipolar Bose condensate trapped in a one-dimensional optical lattices. Our results show that the Bogoliubov bands of the system, particularly the lowest one, can be significantly influenced when one tunes the dipole orientation. Consequently, the calculated static structure factor of an optically trapped dipolar Bose gas shows marked difference from the non-dipolar one. Moreover, we show that the effects of dipole-dipole interaction on the dynamic structure factor is also strongly affected by the strength of the optical confinement.

  3. Super-shell structure in harmonically trapped fermionic gases and its semi-classical interpretation

    NASA Astrophysics Data System (ADS)

    Ögren, M.; Yu, Y.; Åberg, S.; Reimann, S. M.; Brack, M.

    2006-07-01

    It was recently shown in self-consistent Hartree-Fock calculations that a harmonically trapped dilute gas of fermionic atoms with a repulsive two-body interaction exhibits a pronounced super-shell structure: the shell fillings due to the spherical harmonic trapping potential are modulated by a beat mode. This changes the 'magic numbers' occurring between the beat nodes by half a period. The length and amplitude of the beating mode depends on the strength of the interaction. We give a qualitative interpretation of the beat structure in terms of a semi-classical trace formula that uniformly describes the symmetry breaking U(3) → SO(3) in a three-dimensional harmonic oscillator potential perturbed by an anharmonic term ~r4 with arbitrary strength. We show that at low Fermi energies (or particle numbers), the beating gross-shell structure of this system is dominated solely by the twofold degenerate circular and (diametrically) pendulating orbits.

  4. Experimental comparison of light-trapping structures for silicon solar cells

    NASA Astrophysics Data System (ADS)

    Tobin, S. P.; Keavney, C. J.; Geoffroy, L. M.; Sanfacon, M. M.

    Silicon solar cells and test structures were made with etched V-grooves on both the front and the back. The light trapping in these structures was compared to that of control samples with polished and textured surfaces. It was found, in agreement with theoretical predictions, that the structure in which the grooves on the front and the back are perpendicular showed the greatest degree of light trapping, i.e., absorbed the most light in the near-bandgap region. Furthermore, the V-groove front surface makes possible a reduction in effective shadow loss by allowing reflection of light from the metal grid lines onto the active area; this reduction was measured at 41 percent in a typical cell. An 0.25 sq cm bifacial concentrator cell with a short-circuit current density of 41.5 mA/sq cm was made by this method.

  5. Formation of granular structures in trapped Bose-Einstein condensates under oscillatory excitations

    NASA Astrophysics Data System (ADS)

    Yukalov, V. I.; Novikov, A. N.; Bagnato, V. S.

    2014-09-01

    We present experimental observations and numerical simulations of nonequilibrium spatial structures in a trapped Bose-Einstein condensate subject to oscillatory perturbations. In experiment, first, there appear collective excitations, followed by quantum vortices. Increasing the amount of the injected energy leads to the formation of vortex tangles representing quantum turbulence. We study what happens after the regime of quantum turbulence, with increasing further the amount of injected energy. In such a strongly nonequilibrium Bose-condensed system of trapped atoms, vortices become destroyed and there develops a new kind of spatial structure exhibiting essentially heterogeneous spatial density. The structure is reminiscent of fog consisting of high-density droplets, or grains, surrounded by the regions of low density. The grains are randomly distributed in space, where they move. They live for a sufficiently long time to be treated as a type of metastable object. Such structures have been observed in nonequilibrium trapped Bose gases of 87Rb, subject to the action of alternating fields. Here we present experimental results and support them by numerical simulation. The granular, or fog structure is essentially different from the state of wave turbulence that develops after increasing further the amount of injected energy.

  6. Quantitative analysis of seismic trapped waves in the rupture zone of the Landers, 1992, California earthquake: Evidence for a shallow trapping structure

    NASA Astrophysics Data System (ADS)

    Peng, Z.; Ben-Zion, Y.; Michael, A. J.; Zhu, L.

    2002-12-01

    Waveform modeling of seismic fault zone (FZ) trapped waves has been claimed to provide a high resolution imaging of FZ structure at seismogenic depth. We analyze quantitatively a waveform data set generated by 238 Landers aftershocks recorded by a portable seismic array (Lee, 1999). The array consists of 33 three-component L-22 seismometers, 22 of which on a line crossing the surface rupture zone of the mainshock. A subset of 93 aftershocks were also recorded by the Southern California Seismic Network, while the other events were recorded only by the FZ array. We locate the latter subset of events with a "grid-search relocation method" using accurately picked P and S arrival times, a half-space velocity model, and back-azimuth adjustment to correct the effect of low velocity FZ material on phase arrivals. Next we determine the quality of FZ trapped wave generation from the ratio of trapped waves to S-wave energy for stations relatively close to and far from the FZ. Energy ratios exceeding 4, between 2 and 4, and less than 2, are assigned quality A, B, and C of trapped wave generation. We find that about 70% of nearby events with S-P time less than 2 sec, including many clearly off the fault, generate FZ trapped waves with quality A or B. This distribution is in marked contrast with previous claims that trapped waves at Landers are generated only by sources close to or inside the fault zone (Li et al., 1994, 2000). The existence of trapped waves due to sources outside the Landers rupture zone indicates that the generating structure is shallow, as demonstrated in recent 3D calculations of wave propagation in irregular FZ structures (Fohrmann et al., 2002). The time difference between the S arrivals and trapped wave group does not grow systematically with increasing source-receiver distance along the fault, in agreement with the above conclusion. The dispersion of trapped waves at Landers is rather weak, again suggesting a short propagation distance inside the low

  7. Structure Determination of Noble Metal Clusters by Trapped Ion Electron Diffraction

    NASA Astrophysics Data System (ADS)

    Schooss, Detlef

    2006-03-01

    The structures of noble metal cluster ions have been studied by the recently developed technique of trapped ion electron diffraction (TIED)^1. In brief, cluster ions are generated by a magnetron sputter source and injected into a cooled (95 K) quadrupole ion trap. After mass selection and thermalization, the trapped ions are irradiated with a 40 keV electron beam. The resulting diffraction pattern is integrated with a CCD detector. The assignment of the structural motif is done via a comparison of the experimental and simulated scattering function, calculated from density functional theory structure calculations. The structures of mass selected silver cluster cations Ag19^+, Ag38^+, Ag55^+, Ag59^+, Ag75^+ and Ag79^+ have been investigated^2. The resulting experimental data are best described by structures based on the icosahedral motif, while closed packed structures could be ruled out. Additionally, we present a comparison of the structures of Cu20^+/-, Ag20^+/- and Au20^+/-. Our findings show unambiguously that the structure of Au20^- is predominantly given by a tetrahedron in agreement with the results of L.S. Wang et al.^3 In contrast, structures of Ag20^- and Cu20^- based on the icosahedral motif agree best with the experimental data. Small structural differences between the charge states are observed. The possibilities and limitations of the TIED method are discussed. (1) M. Maier-Borst, D. B. Cameron, M. Rokni, and J. H. Parks, Physical Review A 59 (5), R3162 (1999); S. Krückeberg, D. Schooss, M. Maier-Borst, and J. H. Parks, Physical Review Letters 85 (21), 4494 (2000). (2) D. Schooss, M.N. Blom, B. v. Issendorff, J. H. Parks, and M.M. Kappes, Nano Letters 5 (10), 1972 (2005). (3) J. Li, X. Li, H. J. Zhai, and L. S. Wang, Science 299, 864 (2003)

  8. Laser machined macro and micro structures on glass for enhanced light trapping in solar cells

    NASA Astrophysics Data System (ADS)

    Moore, David; Rahman, Mahfujur; Dowling, Denis P.; McNally, Patrick J.; Brabazon, Dermot

    2013-03-01

    In order to increase the efficiency of solar cell modules it is necessary to make the optimum use of light incident upon them. Much research has been done on improving light absorption through front surface texturisation and light trapping schemes. Laser light is commonly used in industry for various applications including marking and texturisation. By controlling laser parameters, it is possible to tailor macro and micro structures in most materials. The CO2 laser used in this investigation emits radiation at 10.6 μm with the ability to pulse in the micro-second range. The laser was used to ablate grooved textures in the fused quartz material, used in this study as the light trapping medium, following which an analysis of the effects of the laser parameters on the texture geometry and surface morphology was performed through a combination of cross sectioning and scanning electron microscopy. Transmission through the textured glass was improved for most samples after acid etching. The light trapping effects of the best performing textures were analysed by investigating the effects on a silicon solar cell's performance at varying angles of incidence. Results indicated a significant increase in light trapping when light was incident at acute angles. For an angle of incidence of 10∘ a relative increase in efficiency of up to 51 % was observed.

  9. Octupole deformation properties of the Barcelona-Catania-Paris energy density functionals

    SciTech Connect

    Robledo, L. M.; Baldo, M.; Schuck, P.; Vinas, X.

    2010-03-15

    We discuss the octupole deformation properties of the recently proposed Barcelona-Catania-Paris (BCP) energy density functionals for two sets of isotopes, those of radium and barium, in which it is believed that octupole deformation plays a role in the description of the ground state. The analysis is carried out in the mean field framework (Hartree-Fock-Bogoliubov approximation) by using the axially symmetric octupole moment as a constraint. The main ingredients entering the octupole collective Hamiltonian are evaluated and the lowest-lying octupole eigenstates are obtained. In this way we restore, in an approximate way, the parity symmetry spontaneously broken by the mean field and also incorporate octupole fluctuations around the ground-state solution. For each isotope the energy of the lowest lying 1{sup -} state and the B(E1) and B(E3) transition probabilities have been computed and compared to both the experimental data and the results obtained in the same framework with the Gogny D1S interaction, which are used here as a well-established benchmark. Finally, the octupolarity of the configurations involved in the way down to fission of {sup 240}Pu, which is strongly connected to the asymmetric fragment mass distribution, is studied. We confirm with this thorough study the suitability of the BCP functionals to describe octupole-related phenomena.

  10. Effect of dust charging and trapped electrons on nonlinear solitary structures in an inhomogeneous magnetized plasma

    SciTech Connect

    Kumar, Ravinder; Malik, Hitendra K.; Singh, Khushvant

    2012-01-15

    Main concerns of the present article are to investigate the effects of dust charging and trapped electrons on the solitary structures evolved in an inhomogeneous magnetized plasma. Such a plasma is found to support two types of waves, namely, fast wave and slow wave. Slow wave propagates in the plasma only when the wave propagation angle {theta} satisfies the condition {theta}{>=}tan{sup -1}{l_brace}({radical}((1+2{sigma})-[(n{sub dlh}({gamma}{sub 1}-1))/(1+n{sub dlh}{gamma}{sub 1})])-v{sub 0}/u{sub 0}){r_brace}, where v{sub 0}(u{sub 0}) is the z- (x-) component of ion drift velocity, {sigma} = T{sub i}/T{sub eff}, n{sub dlh} = n{sub d0}/(n{sub el0} + n{sub eh0}), and {gamma}{sub 1}=-(1/{Phi}{sub i0})[(1-{Phi}{sub i0}/1+{sigma}(1-{Phi}{sub i0}))] together with T{sub i} as ion temperature, n{sub el0}(n{sub eh0}) as the density of trapped (isothermal) electrons, {Phi}{sub i0} as the dust grain (density n{sub d0}) surface potential relative to zero plasma potential, and T{sub eff}=(n{sub elo}+n{sub eho})T{sub el}T{sub eh}/(n{sub elo}T{sub eh}+n{sub eho}T{sub el}), where T{sub el}(T{sub eh}) is the temperature of trapped (isothermal) electrons. Both the waves evolve in the form of density hill type structures in the plasma, confirming that these solitary structures are compressive in nature. These structures are found to attain higher amplitude when the charge on the dust grains is fluctuated (in comparison with the case of fixed charge) and also when the dust grains and trapped electrons are more in number; the same is the case with higher temperature of ions and electrons. Slow solitary structures show weak dependence on the dust concentration. Both types of structures are found to become narrower under the application of stronger magnetic field. With regard to the charging of dust grains, it is observed that the charge gets reduced for the higher trapped electron density and temperature of ions and electrons, and dust charging shows weak dependence on the ion

  11. Self-Trapping of Charge Carriers in Semiconducting Carbon Nanotubes: Structural Analysis.

    PubMed

    Adamska, Lyudmyla; Nazin, George V; Doorn, Stephen K; Tretiak, Sergei

    2015-10-01

    The spatial extent of charged electronic states in semiconducting carbon nanotubes with indices (6,5) and (7,6) was evaluated using density functional theory. It was observed that electrons and holes self-trap along the nanotube axis on length scales of about 4 and 8 nm, respectively, which localize cations and anions on comparable length scales. Self-trapping is accompanied by local structural distortions showing periodic bond-length alternation. The average lengthening (shortening) of the bonds for anions (cations) is expected to shift the G-mode frequency to lower (higher) values. The smaller-diameter nanotube has reduced structural relaxation due to higher carbon-carbon bond strain. The reorganization energy due to charge-induced deformations in both nanotubes is found to be in the 30-60 meV range. Our results represent the first theoretical simulation of self-trapping of charge carriers in semiconducting nanotubes, and agree with available experimental data. PMID:26722885

  12. Crustal seismic structure beneath the Deccan Traps area (Gujarat, India), from local travel-time tomography

    NASA Astrophysics Data System (ADS)

    Prajapati, Srichand; Kukarina, Ekaterina; Mishra, Santosh

    2016-03-01

    The Gujarat region in western India is known for its intra-plate seismic activity, including the Mw 7.7 Bhuj earthquake, a reverse-faulting event that reactivated normal faults of the Mesozoic Kachchh rift zone. The Late Cretaceous Deccan Traps, one of the largest igneous provinces on the Earth, cover the southern part of Gujarat. This study is aimed at bringing light to the crustal rift zone structure and likely origin of the Traps based on the velocity structure of the crust beneath Gujarat. Tomographic inversion of the Gujarat region was done using the non-linear, passive-source tomographic algorithm, LOTOS. We use high-quality arrival times of 22,280 P and 22,040 S waves from 3555 events recorded from August 2006 to May 2011 at 83 permanent and temporary stations installed in Gujarat state by the Institute of Seismological Research (ISR). We conclude that the resulting high-velocity anomalies, which reach down to the Moho, are most likely related to intrusives associated with the Deccan Traps. Low velocity anomalies are found in sediment-filled Mesozoic rift basins and are related to weakened zones of faults and fracturing. A low-velocity anomaly in the north of the region coincides with the seismogenic zone of the reactivated Kachchh rift system, which is apparently associated with the channel of the outpouring of Deccan basalt.

  13. Fabrication of the replica templated from butterfly wing scales with complex light trapping structures

    NASA Astrophysics Data System (ADS)

    Han, Zhiwu; Li, Bo; Mu, Zhengzhi; Yang, Meng; Niu, Shichao; Zhang, Junqiu; Ren, Luquan

    2015-11-01

    The polydimethylsiloxane (PDMS) positive replica templated twice from the excellent light trapping surface of butterfly Trogonoptera brookiana wing scales was fabricated by a simple and promising route. The exact SiO2 negative replica was fabricated by using a synthesis method combining a sol-gel process and subsequent selective etching. Afterwards, a vacuum-aided process was introduced to make PDMS gel fill into the SiO2 negative replica, and the PDMS gel was solidified in an oven. Then, the SiO2 negative replica was used as secondary template and the structures in its surface was transcribed onto the surface of PDMS. At last, the PDMS positive replica was obtained. After comparing the PDMS positive replica and the original bio-template in terms of morphology, dimensions and reflectance spectra and so on, it is evident that the excellent light trapping structures of butterfly wing scales were inherited by the PDMS positive replica faithfully. This bio-inspired route could facilitate the preparation of complex light trapping nanostructure surfaces without any assistance from other power-wasting and expensive nanofabrication technologies.

  14. Plasma resistivity measurements in the Wisconsin levitated octupole

    SciTech Connect

    Brouchous, D. A.

    1980-11-01

    Resistivity measurements parallel to the magnetic field were made on gun injected plasmas ranging in density from 10/sup 9/cm/sup -3/ to 10/sup 1/parallelcm/sup -3/ in the Wisconsin levitated octupole with toroidal and poloidal magnetic fields. The 10/sup 9/cm/sup -3/ plasma was collisionless with lambda/sub mfp/ > 100 mirror lengths, had T/sub e/ = 10 eV, T/sub i/ = 30 eV and was found to have anomalous resistivity scaling like eta = ..sqrt..T/sub e//n/sub e/ when E/sub parallel/ > E/su c/ is the Dreicer critical field. The 10/sup 12/cm/sup -3/ plasma was collisional with lambda/sub mfp/ < mirror length, had T/sub e/ = T/sub i/ approx. = .2 eV and was found to have Spitzer resistivity when E/sub parallel/ < E/sub c/.

  15. Analysis of InAsSb nBn spectrally filtering photon-trapping structures.

    PubMed

    Schuster, Jonathan; D'Souza, Arvind; Bellotti, Enrico

    2014-08-11

    We have numerically analyzed the electromagnetic and electrical characteristics of InAsSb nBn infrared detectors employing a photon-trapping (PT) structure realized with a periodic array of pyramids intended to provide broadband operation. The three-dimensional numerical simulation model was verified by comparing the simulated dark current and quantum efficiency to experimental data. Then, the power and flexibility of the nBn PT design was used to engineer spectrally filtering PT structures. That is, detectors that have a predetermined spectral response to be more sensitive in certain spectral ranges and less sensitive in others. PMID:25320985

  16. Multiple trapping on a comb structure as a model of electron transport in disordered nanostructured semiconductors

    SciTech Connect

    Sibatov, R. T. Morozova, E. V.

    2015-05-15

    A model of dispersive transport in disordered nanostructured semiconductors has been proposed taking into account the percolation structure of a sample and joint action of several mechanisms. Topological and energy disorders have been simultaneously taken into account within the multiple trapping model on a comb structure modeling the percolation character of trajectories. The joint action of several mechanisms has been described within random walks with a mixture of waiting time distributions. Integral transport equations with fractional derivatives have been obtained for an arbitrary density of localized states. The kinetics of the transient current has been calculated within the proposed new model in order to analyze time-of-flight experiments for nanostructured semiconductors.

  17. Multiple trapping on a comb structure as a model of electron transport in disordered nanostructured semiconductors

    NASA Astrophysics Data System (ADS)

    Sibatov, R. T.; Morozova, E. V.

    2015-05-01

    A model of dispersive transport in disordered nanostructured semiconductors has been proposed taking into account the percolation structure of a sample and joint action of several mechanisms. Topological and energy disorders have been simultaneously taken into account within the multiple trapping model on a comb structure modeling the percolation character of trajectories. The joint action of several mechanisms has been described within random walks with a mixture of waiting time distributions. Integral transport equations with fractional derivatives have been obtained for an arbitrary density of localized states. The kinetics of the transient current has been calculated within the proposed new model in order to analyze time-of-flight experiments for nanostructured semiconductors.

  18. On the structural denaturation of biological analytes in trapped ion mobility spectrometry - mass spectrometry.

    PubMed

    Liu, Fanny C; Kirk, Samuel R; Bleiholder, Christian

    2016-06-01

    Key to native ion mobility/mass spectrometry is to prevent the structural denaturation of biological molecules in the gas phase. Here, we systematically assess structural changes induced in the protein ubiquitin during a trapped ion mobility spectrometry (TIMS) experiment. Our analysis shows that the extent of structural denaturation induced in ubiquitin ions is largely proportional to the amount of translational kinetic energy an ion gains from the applied electric field between two collisions with buffer gas particles. We then minimize the efficiency of the structural denaturation of ubiquitin ions in the gas phase during a TIMS experiment. The resulting "soft" TIMS spectra of ubiquitin are found largely identical to those observed on "soft" elevated-pressure ion mobility drift tubes and the corresponding calibrated cross sections are consistent with structures reported from NMR experiments for the native and A-state of ubiquitin. Thus, our analysis reveals that TIMS is useful for native ion mobility/mass spectrometry analysis. PMID:26998732

  19. Shallow Seismic Trapping Structure in the San Jacinto Fault Zone, California

    NASA Astrophysics Data System (ADS)

    Lewis, M. A.; Peng, Z.; Ben-Zion, Y.; Vernon, F.

    2003-12-01

    We analyze a waveform data set generated by 385 events and recorded by linear seismic arrays across the Clark Valley and Coyote Creek faults in the trifurcation area of the San Jacinto fault zone (FZ). The goal is to obtain structural information from a comprehensive analysis of FZ trapped waves in the data. A previous work based on selected waveforms suggested a low-velocity waveguide continuous to a depth of at least 18 km (Li and Vernon, JGR, 2001). If so, events located clearly outside the FZ proper should not generate any FZ trapped waves. On the other hand, a shallow FZ waveguide can produce (Fohrmann et al., PAGEOPH, 2003) trapped waves for events clearly off the fault. Our analysis of trapped waves in the larger considered data set is compatible with the existence of shallow non continuous waveguide layers along both the Clark Valley and Coyote Creek faults. Ben-Zion et al. (GJI, 2003) found in the context of the North Anatolian fault that many events off the fault produce FZ trapped waves and suggested that a better term for such data may be FZ related site effects. Within a distance of roughly 90 km, a subset of 159 events including many off the fault are suitably recorded by the arrays for analysis. A spectral ratio method is used to calculate the concentration of seismic energy within the FZ stations, producing a systematic measure of the quality of trapped waves or FZ related site effects. We find that FZ site effects are observed at FZ stations for the majority of the earthquakes, with the generating events located at various distances from the fault trace and various angles and distances from the receivers. The distribution of the events implies that the trapping structures are not continuous along the strike of either fault branch and do not extend bellow the depth of the shallowest events (e.g., 5 km). A travel time analysis of the difference between the direct S and trapped wave group arrivals shows no systematic increase with hypocentral distance

  20. Building spatially-structured biofilms with single-cell control using laser trapping

    NASA Astrophysics Data System (ADS)

    Rodesney, Christopher; Hutchison, Jaime; Kaushik, Karishma; Le, Henry; Hurwitz, Daniel; Irie, Yasuhiko; Gordon, Vernita

    2015-03-01

    Biofilms are sessile communities of microbes adhered to each other and to an interface. Biofilm infections are notoriously difficult to eradicate, and this arises in part from phenotypic changes due to the spatial structure of the biofilm. Spatial structure controls the microenvironment and intercellular associations, which in turn controls gene expression, virulence, and antibiotic resistance. There are few tools available for elucidating the role of spatial structure in biofilms. We present a method for controlling the positions of bacteria on a surface using optical trapping without impinging cell viability. Initial positions propagate into the developing biofilm, creating spatial structure. The native growth, motility, and surface adhesion of positioned cells are preserved, as shown for model organisms Pseudomonas aeruginosa and Staphylococcus aureus. We demonstrate statistically-significant effects of spatial structure on the growth of monoculture P. aeruginosa biofilms and for co-culture biofilms of P. aeruginosa and S. aureus. Because the laser trap we use is very basic and the other equipment required is inexpensive and standard, we believe that our technique will be a widely-usable tool for biological and physical collaborators at many types of institutions.

  1. Heart-shaped nuclei: Condensation of rotational-aligned octupole phonons

    SciTech Connect

    Frauendorf, S.

    2008-02-15

    The strong octupole correlations in the mass region A{approx_equal}226 are interpreted as rotation-induced condensation of octupole phonons having their angular momentum aligned with the rotational axis. Discrete phonon energy and parity conservation generate oscillations of the energy difference between the lowest rotational bands with positive and negative parity. Anharmonicities tend to synchronize the rotation of the condensate and the quadrupole shape of the nucleus forming a rotating heart shape.

  2. Sediment storage dam: A structural gully erosion control and sediment trapping measure, northern Ethiopia

    NASA Astrophysics Data System (ADS)

    Mekonnen, Mulatie; Keesstra, Saskia; Baartman, Jantiene; Ritsema, Coen

    2014-05-01

    Gully erosion is a prime problem in Ethiopia. This study assessed the severity of gully erosion and the role of sediment storage dams (SSD) in restoring gullies and preventing further gully development, its sediment trapping efficacy (STE) and its capacity in converting degraded gully lands to productive land. On average 2.5 m deep, 6.6 m wide and 28.3 m long gullies were formed in Minizr watershed, northwest Ethiopia, in 2013. Concentrated surface runoff, traditional ditches, graded terraces without suitable water ways and road construction are the main causes of such serious gully erosion. Over grazing, tunnel flow and lack of proper immediate gully treatment actions after gully initiation are found to be additional causes of the problem. Gully erosion was also found as the major source of sediment for downstream rivers and water reservoirs. The annual volume of soil eroded from only four gullies was 1941.3 m3. To control gully erosion, SSDs were found to be important physical structures, which can trap significant amount of sediment within gullies and they can convert unproductive gully land to productive agricultural land for fruit and crop production. Eight SSDs trapped about 44*103 m3 of sediment within 2 to 8 years. Two representative SSDs constructed using gabion and stone were tested for their STE. Results showed that their efficacy was 74.1% and 66.4% for the gabion and stone SSDs, respectively. Six of the older SSDs were already full of sediment and created 0.75 ha of productive land within 2 to 8 years. SSDs best fits to treat large size and deep gullies where other gully control measures, check dams, could not function well. To prevent gully formation, controlling its causes that is avoiding traditional ditches, practicing grassed water ways to safely remove runoff water from graded terraces, integrated watershed and road side management practices are important solutions. KEY WORDS: Sediment storage dam, gully erosion, sediment trapping efficacy

  3. Coulomb structures of charged macroparticles in static magnetic traps at cryogenic temperatures

    NASA Astrophysics Data System (ADS)

    Vasiliev, M. M.; Petrov, O. F.; Statsenko, K. B.

    2015-12-01

    Electrically charged (up to 107 e) macroscopic superconducting particles with sizes in the micrometer range confined in a static magnetic trap in liquid nitrogen and in nitrogen vapor at temperatures of 77-91 K are observed experimentally. The macroparticles with sizes up to 60 μm levitate in a nonuniform static magnetic field B ~ 2500 G. The formation of strongly correlated structures comprising as many as ~103 particles is reported. The average particle distance in these structures amounts to 475 μm. The coupling parameter and the Lindemann parameter of these structures are estimated to be ~107 and ~0.03, respectively, which is characteristic of strongly correlated crystalline or glasslike structures.

  4. Influence of the octupole mode on nuclear high-K isomeric properties

    NASA Astrophysics Data System (ADS)

    Minkov, Nikolay; Walker, Phil

    2014-05-01

    The influence of quadrupole-octupole deformations on the energy and magnetic properties of high-K isomeric states in even-even actinide (U, Pu, Cm, Fm, No), rare-earth (Nd, Sm and Gd), and superheavy (^{270}\\text{Ds}) nuclei is examined within a deformed shell model with pairing interaction. The neutron two-quasiparticle (2qp) isomeric energies and magnetic dipole moments are calculated over a wide range in the plane of quadrupole and octupole deformations. In most cases the magnetic moments exhibit a pronounced sensitivity to the octupole deformation. At the same time, the calculations outline three different groups of nuclei: with pronounced, shallow, and missing minima in the 2qp energy surfaces with respect to the octupole deformation. The result indicates regions of nuclei with octupole softness as well as with possible octupole deformation in the high-K isomeric states. These findings show the need for further theoretical analysis as well as of detailed experimental measurements of magnetic moments in heavy deformed nuclei.

  5. Plasmonic light trapping in an ultrathin photovoltaic layer with film-coupled metamaterial structures

    NASA Astrophysics Data System (ADS)

    Wang, Hao; Wang, Liping

    2015-02-01

    A film-coupled metamaterial structure is numerically investigated for enhancing the light absorption in an ultrathin photovoltaic layer of crystalline gallium arsenide (GaAs). The top subwavelength concave grating and the bottom metallic film could not only effectively trap light with the help of wave interference and magnetic resonance effects excited above the bandgap, but also practically serve as electrical contacts for photon-generated charge collection. The energy absorbed by the active layer is greatly enhanced with the help of the film-coupled metamaterial structure, resulting in significant improvement on the short-circuit current density by three times over a free-standing GaAs layer at the same thickness. The performance of the proposed light trapping structure is demonstrated to be little affected by the grating ridge width considering the geometric tolerance during fabrication. The optical absorption at oblique incidences also shows direction-insensitive behavior, which is highly desired for efficiently converting off-normal sunlight to electricity. The results would facilitate the development of next-generation ultrathin solar cells with lower cost and higher efficiency.

  6. Plasmonic light trapping in an ultrathin photovoltaic layer with film-coupled metamaterial structures

    SciTech Connect

    Wang, Hao; Wang, Liping

    2015-02-15

    A film-coupled metamaterial structure is numerically investigated for enhancing the light absorption in an ultrathin photovoltaic layer of crystalline gallium arsenide (GaAs). The top subwavelength concave grating and the bottom metallic film could not only effectively trap light with the help of wave interference and magnetic resonance effects excited above the bandgap, but also practically serve as electrical contacts for photon-generated charge collection. The energy absorbed by the active layer is greatly enhanced with the help of the film-coupled metamaterial structure, resulting in significant improvement on the short-circuit current density by three times over a free-standing GaAs layer at the same thickness. The performance of the proposed light trapping structure is demonstrated to be little affected by the grating ridge width considering the geometric tolerance during fabrication. The optical absorption at oblique incidences also shows direction-insensitive behavior, which is highly desired for efficiently converting off-normal sunlight to electricity. The results would facilitate the development of next-generation ultrathin solar cells with lower cost and higher efficiency.

  7. Escherichia coli and Candida albicans Induced Macrophage Extracellular Trap-Like Structures with Limited Microbicidal Activity

    PubMed Central

    Liao, Chengshui; Liu, Xiaolei; Du, Jing; Shi, Haining; Wang, Xuelin; Bai, Xue; Peng, Peng; Yu, Lu; Wang, Feng; Zhao, Ying; Liu, Mingyuan

    2014-01-01

    The formation of extracellular traps (ETs) has recently been recognized as a novel defense mechanism in several types of innate immune cells. It has been suggested that these structures are toxic to microbes and contribute significantly to killing several pathogens. However, the role of ETs formed by macrophages (METs) in defense against microbes remains little known. In this study, we demonstrated that a subset of murine J774A.1 macrophage cell line (8% to 17%) and peritoneal macrophages (8.5% to 15%) form METs-like structures (METs-LS) in response to Escherichia coli and Candida albicans challenge. We found only a portion of murine METs-LS, which are released by dying macrophages, showed detectable killing effects on trapped E. coli but not C. albicans. Fluorescence and scanning electron microscopy analyses revealed that, in vitro, both microorganisms were entrapped in J774A.1 METs-LS composed of DNA and microbicidal proteins such as histone, myeloperoxidase and lysozyme. DNA components of both nucleus and mitochondrion origins were detectable in these structures. Additionally, METs-LS formation occurred independently of ROS produced by NADPH oxidase, and this process did not result in cell lysis. In summary, our results emphasized that microbes induced METs-LS in murine macrophage cells and that the microbicidal activity of these METs-LS differs greatly. We propose the function of METs-LS is to contain invading microbes at the infection site, thereby preventing the systemic diffusion of them, rather than significantly killing them. PMID:24587206

  8. Shell Structure, Melting and Dynamics of Ion Clusters Confined in an Octupolar Trap

    SciTech Connect

    Calvo, F.; Yurtsever, E.

    2009-12-03

    The stable structures of clusters of identical ions trapped in an isotropic octupolar trap are investigated using global optimization methods. These clusters form well defined shells of ions that are approximately solutions of the Thomson problem. In particular, magic numbers are found to correlate with highly symmetric configurations. Using Monte Carlo simulations, finite temperature properties are also investigated. Melting proceeds from the core, and takes place through a very progressive loss of the shell structure. The hollow shape is eventually lost at very high temperatures, where the ions essentially feel the confinement but not the Coulomb repulsion. The vibrational density of states shows marked differences with the harmonic case, but also with bulk Wigner crystals. The variations of the maximal Lyapunov exponent obtained from additional molecular dynamics trajectories reveals that the dynamics becomes increasingly chaotic as the temperature increases. With the decreasing influence of the Coulomb interaction, a more regular behavior is found at very high temperatures but, contrary to the quadrupolar case, still highly chaotic.

  9. Antimatter plasmas in a multipole trap for antihydrogen.

    PubMed

    Andresen, G; Bertsche, W; Boston, A; Bowe, P D; Cesar, C L; Chapman, S; Charlton, M; Chartier, M; Deutsch, A; Fajans, J; Fujiwara, M C; Funakoshi, R; Gill, D R; Gomberoff, K; Hangst, J S; Hayano, R S; Hydomako, R; Jenkins, M J; Jørgensen, L V; Kurchaninov, L; Madsen, N; Nolan, P; Olchanski, K; Olin, A; Povilus, A; Robicheaux, F; Sarid, E; Silveira, D M; Storey, J W; Telle, H H; Thompson, R I; van der Werf, D P; Wurtele, J S; Yamazaki, Y

    2007-01-12

    We have demonstrated storage of plasmas of the charged constituents of the antihydrogen atom, antiprotons and positrons, in a Penning trap surrounded by a minimum-B magnetic trap designed for holding neutral antiatoms. The neutral trap comprises a superconducting octupole and two superconducting, solenoidal mirror coils. We have measured the storage lifetimes of antiproton and positron plasmas in the combined Penning-neutral trap, and compared these to lifetimes without the neutral trap fields. The magnetic well depth was 0.6 T, deep enough to trap ground state antihydrogen atoms of up to about 0.4 K in temperature. We have demonstrated that both particle species can be stored for times long enough to permit antihydrogen production and trapping studies. PMID:17358606

  10. Application of linker technique to trap transiently interacting protein complexes for structural studies

    PubMed Central

    Reddy Chichili, Vishnu Priyanka; Kumar, Veerendra; Sivaraman, J.

    2016-01-01

    Protein-protein interactions are key events controlling several biological processes. We have developed and employed a method to trap transiently interacting protein complexes for structural studies using glycine-rich linkers to fuse interacting partners, one of which is unstructured. Initial steps involve isothermal titration calorimetry to identify the minimum binding region of the unstructured protein in its interaction with its stable binding partner. This is followed by computational analysis to identify the approximate site of the interaction and to design an appropriate linker length. Subsequently, fused constructs are generated and characterized using size exclusion chromatography and dynamic light scattering experiments. The structure of the chimeric protein is then solved by crystallization, and validated both in vitro and in vivo by substituting key interacting residues of the full length, unlinked proteins with alanine. This protocol offers the opportunity to study crucial and currently unattainable transient protein interactions involved in various biological processes. PMID:26985443

  11. Structural features of northern Tarim basin: Implications for regional tectonics and petroleum traps

    SciTech Connect

    Dong Jia; Juafu Lu; Dongsheng Cai

    1998-01-01

    The rhombus-shaped Tarim basin in northwestern China is controlled mainly by two left-lateral strike-slip systems: the northeast-trending Altun fault zone along its southeastern side and the northeast-trending Aheqi fault zone along its northwestern side. In this paper, we discuss the northern Tarim basin`s structural features, which include three main tectonic units: the Kalpin uplift, the Kuqa depression, and the North Tarim uplift along the northern margin of the Tarim basin. Structural mapping in the Kalpin uplift shows that a series of imbricated thrust sheets have been overprinted by strike-slip faulting. The amount of strike-slip displacement is estimated to be 148 km by restoration of strike-slip structures in the uplift. The Kuqa depression is a Mesozoic-Cenozoic foredeep depression with well-developed flat-ramp structures and fault-related folds. The Baicheng basin, a Quaternary pull-apart basin, developed at the center of the Kuqa depression. Subsurface structures in the North Tarim uplift can be divided into the Mesozoic-Cenozoic and the Paleozoic lithotectonic sequences in seismic profiles. The Paleozoic litho-tectonic sequence exhibits the interference of earlier left-lateral and later right-lateral strike-slip structures. Many normal faults in the Mesozoic-Cenozoic litho-tectonic sequence form the negative flower structures in the North Tarim uplift; these structures commonly directly overlie the positive flower structures in the Paleozoic litho-tectonic sequence. The interference regions of the northwest-trending and northeast-trending folds in the Paleozoic tectonic sequence have been identified to have the best trap structures. Our structural analysis indicates that the Tarim basin is a transpressional foreland basin rejuvenated during the Cenozoic.

  12. Structure of cyclin G-associated kinase (GAK) trapped in different conformations using nanobodies

    PubMed Central

    Chaikuad, Apirat; Keates, Tracy; Vincke, Cécile; Kaufholz, Melanie; Zenn, Michael; Zimmermann, Bastian; Gutiérrez, Carlos; Zhang, Rong-guang; Hatzos-Skintges, Catherine; Joachimiak, Andrzej; Muyldermans, Serge; Herberg, Friedrich W.; Knapp, Stefan; Müller, Susanne

    2014-01-01

    GAK (cyclin G-associated kinase) is a key regulator of clathrin-coated vesicle trafficking and plays a central role during development. Additionally, due to the unusually high plasticity of its catalytic domain, it is a frequent ‘off-target’ of clinical kinase inhibitors associated with respiratory side effects of these drugs. In the present paper, we determined the crystal structure of the GAK catalytic domain alone and in complex with specific single-chain antibodies (nanobodies). GAK is constitutively active and weakly associates in solution. The GAK apo structure revealed a dimeric inactive state of the catalytic domain mediated by an unusual activation segment interaction. Co-crystallization with the nanobody NbGAK_4 trapped GAK in a dimeric arrangement similar to the one observed in the apo structure, whereas NbGAK_1 captured the activation segment of monomeric GAK in a well-ordered conformation, representing features of the active kinase. The presented structural and biochemical data provide insight into the domain plasticity of GAK and demonstrate the utility of nanobodies to gain insight into conformational changes of dynamic molecules. In addition, we present structural data on the binding mode of ATP mimetic inhibitors and enzyme kinetic data, which will support rational inhibitor design of inhibitors to reduce the off-target effect on GAK. PMID:24438162

  13. Stable and Vibrational Octupole Modes in Mo, Xe, Ba, La, Ce and Nd

    SciTech Connect

    Gore, P.M.; Hamilton, J.H.; Hwang, J.K.; Jones, E.F.; Peker, L.K.; Ramayya, A.V.; Zhang, X.Q.; Zhu, S.J.

    1998-05-18

    Evidence is presented for stable octupole deformation in neutron-rich nuclei, bounded by Z = 54-58 and N = 85-92. To either side of this region negative parity bands built on more vibrational type octupole modes are observed in {sup 140}Ba and {sup 152,154}Nd. The largest stable octupole deformation ({beta}{sub s} {approximately} 0.1) is found in {sup 144}Ba{sub as}. The theoretically predicted quenching ({beta}{sub s} {approximately} 0) of stable octupole deformation at higher spins is found in {sup 140}Ba. There is good agreement between theory and experiment for the strongly varying electric dipole moments as a function of mass for {sup 142-141}Ba. In odd-A {sup 142}Ba and odd-Z {sup 140}La, we observe parity doublets, two pairs of positive and negative parity bands with opposite spins. In {sup 145}La a strong coupled ground band with symmetric shape coexists with the asymmetric octupole shape which stabilizes above about spin 19/2. In {sup 145,147}La a strong reduction in E2 strength around 25/2 from band crossing is observed. The isotope {sup 109}Mo was identified and a new region of stable uctpole deformation is identified in {sup 107,108}Mo centered around N = 64-66 as earlier predicted. This is the first case of stable uctpole deformation involving only one pair of orbitals.

  14. Search for the two-phonon octupole vibrational state in {sup 208}Pb

    SciTech Connect

    Blumenthal, D.J.; Henning, W.; Janssens, R.V.F.

    1995-08-01

    We performed an experiment to search for the two-phonon octupole vibrational state in {sup 208}Pb. Thick targets of {sup 208}Pb, {sup 209}Bi, {sup 58,64}Ni, and {sup 160}Gd were bombarded with 1305 MeV beams of were bombard {sup 208}Pb supplied by ATLAS. Gamma rays were detected using the Argonne-Notre Dame BGO gamma-ray facility, consisting of 12 Compton-suppressed germanium detectors surrounding an array of 50 BGO scintillators. We identified some 30 known gamma rays from {sup 208}Pb in the spectra gated by the 5{sup -} {yields} 3{sup -} and 3{sup -} {yields} 0{sup +} transitions in {sup 208}Pb. In addition, after unfolding these spectra for Compton response, we observed broad coincident structures in the energy region expected for the 2-phonon states. Furthermore, we confirmed the placement of a 2485 keV line observed previously in {sup 207}Pb and find no evidence consistent with the placement of this line in {sup 208}Pb. We are currently in the process of investigating the origin of the broadened lines observed in the spectra, extracting the excitation probability of states in {sup 208}Pb, and determining the relative probability of mutual excitation and neutron transfer in this reaction. An additional experiment is also being performed to collect much higher statistics germanium-germanium coincidence data for the thick {sup 208}Pb target.

  15. Search for stable octupole deformation in the nucleus /sup 225/Fr

    SciTech Connect

    Burke, D.G.; Kurcewicz, W.; Loevhoeiden, G.; Nyboe, K.; Thorsteinsen, T.F.; Gietz, H.; Kaffrell, N.; Rogowski, J.; Naumann, R.A.; Borge, M.J.G.; and others

    1987-12-10

    The level structure of /sup 225/Fr has been studied from the /sup 225/Rn(..beta../sup -/) decay in on-line experiments at the ISOLDE facility. A level scheme was constructed on the basis of gamma--gamma coincidence data, and the multipolarities of many transitions were established by conversion electron measurements. Levels in /sup 225/Fr were also studied with the /sup 226/Ra(t,..cap alpha..)/sup 225/Fr reaction at the McMaster University Accelerator Laboratory, using a target of /sup 226/Ra(T/sub 1/2/ = 1600y) and a magnetic spectrograph to analyze the alpha spectra. The first three excited states, at 28.5, 82.5 and 128.2 keV, are interpreted as rotational band members based on the ground state, which is known to have I = 3/2. The (t,..cap alpha..) strengths to these levels indicate a 3/2/sup -/(532) assignment to the ground state. No evidence for an octupole deformation in /sup 225/Fr has been found so far, although analysis of data for other excited states is continuing.

  16. Extension-related structural traps in fault basins of eastern Nevada

    SciTech Connect

    Walker, C.T.; Dennis, J.G.; Lumsden, W.W.

    1989-04-01

    Low-angle younger-over-older faults have been widely reported in eastern Nevada, although no general agreement exists on their origin. Three preferred models are (1) local gravity sliding, (2) mid-crustal ductile extension, and (3) a master detachment possibly extending into the mantle. None are fully supported by field evidence. Some low-angle faults in the White Pine, Duck Creek and Schell Creek Ranges involve ductile extension along incompetent sedimentary units and brittle extension of intercalated competent units to form lenticular stretch structures. Upper crustal extension may be an indirect response to midcrustal ductile extension that occurred during a Tertiary heating event. Between the Duck Creek and Schell Creek Ranges, extension attenuated the pre-carboniferous section, creating a depression in which Carboniferous rocks were preserved. Since this structure, termed a pseudograben, can be traced northward into a typical graben, basins may be initiated by attenuation, with rifting occurring later. In such basins, subsurface detachments should be expected. Some low-angle faults resemble megalandslides because fragmented competent units slid into depressions created by attenuation. With retreat of the geotherms, ductile extension was confined to deep crustal levels and rifting replaced low-angle faulting at higher levels. Potential extension traps in basins are large-scale stretch structures, porous and permeable units truncated and sealed by detachment, and tilted blocks cut by steep faults. Best prospects are likely to occur in basins subjected only to Tertiary heating because oil generated at that time would be tapped in developing extension structures.

  17. Enhancing the absorption capabilities of thin-film solar cells using sandwiched light trapping structures.

    PubMed

    Abdellatif, S; Kirah, K; Ghannam, R; Khalil, A S G; Anis, W

    2015-06-10

    A novel structure for thin-film solar cells is simulated with the purpose of maximizing the absorption of light in the active layer and of reducing the parasitic absorption in other layers. In the proposed structure, the active layer is formed from an amorphous silicon thin film sandwiched between silicon nanowires from above and photonic crystal structures from below. The upper electrical contact consists of an indium tin oxide layer, which serves also as an antireflection coating. A metal backreflector works additionally as the other contact. The simulation was done using a new reliable, efficient and generic optoelectronic approach. The suggested multiscale simulation model integrates the finite-difference time-domain algorithm used in solving Maxwell's equation in three dimensions with a commercial simulation platform based on the finite element method for carrier transport modeling. The absorption profile, the external quantum efficient, and the power conversion efficiency of the suggested solar cell are calculated. A noticeable enhancement is found in all the characteristics of the novel structure with an estimated 32% increase in the total conversion efficiency over a cell without any light trapping mechanisms. PMID:26192857

  18. Investigation of charge trapping mechanism for nanocrystal-based organic nonvolatile floating gate memory devices by band structure analysis

    NASA Astrophysics Data System (ADS)

    Lee, Dong-Hoon; Lim, Ki-Tae; Park, Eung-Kyu; Shin, Ha-Chul; Kim, Chung Soo; Park, Kee-Chan; Ahn, Joung-Real; Bang, Jin Ho; Kim, Yong-Sang

    2016-05-01

    This paper investigates the charge trapping mechanism and electrical performance of CdSe nanocrystals, such as nanoparticles and nanowires in organic floating gate memory devices. Despite of same chemical component, each nanocrystals show different electrical performances with distinct trapping mechanism. CdSe nanoparticles trap holes in the memory device; on the contrary, nanowires trap electrons. This phenomenon is mainly due to the difference of energy band structures between nanoparticles and nanowires, measured by the ultraviolet photoelectron spectroscopy. Also, we investigated the memory performance with C- V characteristics, charging and discharging phenomena, and retention time. The nanoparticle based hole trapping memory device has large memory window while the nanowire based electron trapping memory shows a narrow memory window. In spite of narrow memory window, the nanowire based memory device shows better retention performance of about 55% of the charge even after 104 sec of charging. The contrasting performance of nanoparticle and nanowire is attributed to the difference in their energy band and the morphology of thin layer in the device. [Figure not available: see fulltext.

  19. Characterization and FDTD simulation analysis on light trapping structures of amorphous silicon thin films by laser irradiation

    NASA Astrophysics Data System (ADS)

    Huang, Lu; Jin, Jing; Yuan, Zhijun; Yang, Weiguang; Wang, Linjun; Shi, Weimin; Zhou, Jun; Lou, Qihong

    2016-05-01

    The effect of laser energy density on the light-trapping structures of amorphous silicon (α-Si) thin films is studied both theoretically and experimentally. The thin films are irradiated by a frequency-doubled (λ = 532 nm) Nd:YAG pulsed nanosecond laser. An effective finite difference time domain (FDTD) model is built to find the optimized laser energy density (EL) for the light trapping structures of α-Si. Based on the simulation analysis, it shows the variation of reflection spectra with laser energy density. The optimized reflection spectra at EL = 1000 mJ/cm2 measured by UV-visible spectroscopy confirms to agree well with that corresponding to the depth to diameter ratio (h/D) in the FDTD simulation. The surface morphology characterization by optical microscope (OM) and scanning electron microscope (SEM) accords fairly well to of light-trapping modeling in the simulation.

  20. Stress influenced trapping processes in Si based multi-quantum well structures and heavy ions implanted Si

    SciTech Connect

    Ciurea, Magdalena Lidia Lazanu, Sorina

    2014-10-06

    Multi-quantum well structures and Si wafers implanted with heavy iodine and bismuth ions are studied in order to evaluate the influence of stress on the parameters of trapping centers. The experimental method of thermostimullatedcurrents without applied bias is used, and the trapping centers are filled by illumination. By modeling the discharge curves, we found in multilayered structures the parameters of both 'normal' traps and 'stress-induced' ones, the last having a Gaussian-shaped temperature dependence of the cross section. The stress field due to the presence of stopped heavy ions implanted into Si was modeled by a permanent electric field. The increase of the strain from the neighborhood of I ions to the neighborhood of Bi ions produces the broadening of some energy levels and also a temperature dependence of the cross sections for all levels.

  1. Chemical and Structural Analysis of an Antibody Folding Intermediate Trapped during Glycan Biosynthesis

    PubMed Central

    2012-01-01

    Human IgG Fc glycosylation modulates immunological effector functions such as antibody-dependent cellular cytotoxicity and phagocytosis. Engineering of Fc glycans therefore enables fine-tuning of the therapeutic properties of monoclonal antibodies. The N-linked glycans of Fc are typically complex-type, forming a network of noncovalent interactions along the protein surface of the Cγ2 domain. Here, we manipulate the mammalian glycan-processing pathway to trap IgG1 Fc at sequential stages of maturation, from oligomannose- to hybrid- to complex-type glycans, and show that the Fc is structurally stabilized following the transition of glycans from their hybrid- to complex-type state. X-ray crystallographic analysis of this hybrid-type intermediate reveals that N-linked glycans undergo conformational changes upon maturation, including a flip within the trimannosyl core. Our crystal structure of this intermediate reveals a molecular basis for antibody biogenesis and provides a template for the structure-guided engineering of the protein–glycan interface of therapeutic antibodies. PMID:23025485

  2. Specifications of the octupole magnets required for the ATF2 ultra-low ß* lattice

    SciTech Connect

    Marin, E.; Modena, M.; Tauchi, T.; Terunuma, N.; Tomas, R.; White, G.R.; /SLAC

    2014-05-28

    The Accelerator Test Facility 2 (ATF2) aims to test the novel chromaticity correction for higher chromaticity lattices as the one of CLIC. To this end the ATF2 ultra-low ß* lattice is designed to vertically focus the beam at the focal point or usually referred to as interaction point (IP), down to 23 nm. However when the measured multipole components of the ATF2 magnets are considered in the simulations, the evaluated spot sizes at the IP are well above the design value. The designed spot size is effectively recovered by inserting a pair of octupole magnets. In this note we address the technical specifications required for these octupole magnets.

  3. Influence of octupole interactions on the behavior of negative-parity states at low spins

    SciTech Connect

    Sitdikov, A. S. Safarov, R. Kh.; Kvasil, J.

    2006-12-15

    The energies of negative-parity levels based on two-particle states exhibit a nonlinear behavior at low spins versus the core-rotation energy because the alignment process has not yet been completed for them. This behavior of negative-parity levels in the low-spin region is satisfactorily described upon the inclusion of octupole-octupole interactions. This is demonstrated within the rotational model involving the Coriolis mixing of states for the even-even isotopes {sup 162-168}Hf.

  4. Possible octupole deformation in Cs and Ba nuclei from their differential radii

    SciTech Connect

    Sheline, R.K.; Jain, A.K.; Jain, K.

    1988-12-01

    The odd-even staggering of the differential radii of Fr and Ra and the Cs and Ba nuclei is compared. This staggering is inverted in the region of known octupole deformation in the Fr and Ra nuclei. The normal staggering is eliminated in the Cs nuclei and attenuated in the Ba nuclei for neutron numbers 85--88. This fact is used to suggest the possible existence of octupole deformation and its neutron number range in the Cs and Ba nuclear ground states.

  5. Experimental and theoretical study of dielectrophoretic particle trapping in arrays of insulating structures: Effect of particle size and shape.

    PubMed

    Saucedo-Espinosa, Mario A; Lapizco-Encinas, Blanca H

    2015-05-01

    Insulator-based dielectrophoresis (iDEP) employs insulating structures embedded in a microchannel to produce electric field gradients. This contribution presents a detailed analysis of the regions within an iDEP system where particles are likely to be retained due to dielectrophoretic trapping in a microchannel with an array of cylindrical insulating structures. The effects of particle size and shape on dielectrophoretic trapping were analyzed by employing 1 and 2 μm polystyrene particles and Escherichia coli cells. This research aims to study the mechanism behind dielectrophoretic trapping and develop a deeper understanding of iDEP systems. Mathematical modeling with COMSOL Multiphysics was employed to assess electrokinetic and dielectrophoretic particle velocities. Experiments were carried out to determine the location of dielectrophoretic barriers that block particle motion within an iDEP microchannel; this supported the estimation of a correction factor to match experiments and simulations. Particle velocities were predicted with the model, demonstrating how the different forces acting on the particles are in equilibrium when particle trapping occurs. The results showed that particle size and shape have a significant effect on the magnitude, location, and shape of the regions of dielectrophoretic trapping of particles, which are defined by DEP isovelocity lines and EK isovelocity lines. PMID:25487065

  6. Morphing structures of the Dionaea muscipula Ellis during the trap opening and closing

    PubMed Central

    Volkov, Alexander G; Forde-Tuckett, Victoria; Volkova, Maya I; Markin, Vladislav S

    2014-01-01

    The Venus flytrap is a marvelous plant that has intrigued scientists since the times of Charles Darwin. This carnivorous plant is capable of very fast movements to catch a prey. We found that the maximal speed of the trap closing in the Dionaea muscipula Ellis is about 130 000 times faster than the maximal speed of the trap opening. The mechanism and kinetics of this movement was debated for a long time. Here, the most recent Hydroelastic Curvature Model is applied to the analysis of this movement during closing and opening of the trap with or without a prey. Equations describing the trap movement were derived and verified with experimental data. Chloroform and ether, both anesthetic agents, induce action potentials and close the trap without the mechanical stimulation of trigger hairs. We tested this by dropping 10 μL of ether on the midrib inside the trap without touching any of the mechanosensitive trigger hairs. The trap closed slowly in 10 s. This is at least 20 times slower than the closing of the trap mechanically or electrically. The similar effect can be induced by placing 10 μL of chloroform on the midrib inside the trap, however, the lobes closing time in this case is as fast as closing after mechanical stimulation of the trigger hairs. PMID:24618927

  7. Spin structure of harmonically trapped one-dimensional atoms with spin-orbit coupling

    NASA Astrophysics Data System (ADS)

    Guan, Q.; Blume, D.

    2015-08-01

    We introduce a theoretical approach to determine the spin structure of harmonically trapped atoms with two-body zero-range interactions subject to an equal mixture of Rashba and Dresselhaus spin-orbit coupling created through Raman coupling of atomic hyperfine states. The spin structure of bosonic and fermionic two-particle systems with finite and infinite two-body interaction strength g is calculated. Taking advantage of the fact that the N -boson and N -fermion systems with infinitely large coupling strength g are analytically solvable for vanishing spin-orbit coupling strength kso and vanishing Raman coupling strength Ω , we develop an effective spin model that is accurate to second order in Ω for any kso and infinite g . The three- and four-particle systems are considered explicitly. It is shown that the effective spin Hamiltonian, which contains a Heisenberg exchange term and an anisotropic Dzyaloshinskii-Moriya exchange term, describes the transitions that these systems undergo with the change of kso as a competition between independent spin dynamics and nearest-neighbor spin interactions.

  8. Time-resolved soft-x-ray spectroscopy of a magnetic octupole transition in nickel-like xenon, cesium, and barium ions

    SciTech Connect

    Trabert, E; Beiersdorfer, P; Brown, G V; Boyce, K; Kelley, R L; Kilbourne, C A; Porter, F S; Szymkowiak, A

    2005-11-11

    A microcalorimeter with event mode capability for time-resolved soft-x-ray spectroscopy, and a high-resolution flat-field EUV spectrometer have been employed at the Livermore EBIT-I electron beam ion trap for observations and wavelength measurements of M1, E2, and M3 decays of long-lived levels in the Ni-like ions Xe{sup 26+}, Cs{sup 27+}, and Ba{sup 28+}. Of particular interest is the lowest excited level, 3d{sup 9}4s {sup 3}D{sub 3}, which can only decay via a magnetic octupole (M3) transition. For this level in Xe an excitation energy of (590.40 {+-} 0.03eV) and a level lifetime of (11.5 {+-} 0.5 ms) have been determined.

  9. One-step femtosecond laser patterning of light-trapping structure on dye-sensitized solar cell photoelectrodes†

    PubMed Central

    Zhang, Xi; Liu, Hewei; Huang, Xuezhen; Jiang, Hongrui

    2015-01-01

    Light-trapping patterns were constructed in TiO2 photoelectrodes for dye-sensitized solar cells (DSSCs) by a one-step femtosecond laser structuring method that utilized ablation to create patterns at the surface of nanostructured TiO2 films. As a result, much more light was trapped in the photoelectrodes. Grating and orthogonal-grid patterns were studied, and the light trapping performance was optimized through the adjustment of pattern spacing, which was easily realized in the laser ablation process. With a 5-μm-spacing orthogonal-grid pattern, DSSCs showed a highest photon-to-electron conversion efficiency of 9.32% under AM 1.5G, a 13.5% improvement compared to the same cell without laser ablation. This simple and universal laser ablation method could be used to process many kinds of nanomaterials, and could be applied for various devices with nanostructures. PMID:26113977

  10. Trapping and amplification of quasi-longitudinal whistler wave in kinetic Alfvén wave localized structures

    NASA Astrophysics Data System (ADS)

    Rai, Rajesh Kumar; Sharma, Swati; Gaur, Nidhi; Sharma, R. P.

    2016-03-01

    In this work, we have studied the trapping of obliquely propagating (with respect to the ambient magnetic field) weak whistler wave due to inhomogeneity created by 3D kinetic Alfvén wave (KAW) in a magnetized plasma (magnetotail region). The nonlinearity arises due to ponderomotive effects associated with 3D KAW, consequently, the background density gets modified. The weak whistler wave propagating in this modified density gets either trapped or localized. The study has been carried out numerically and semi-analytically. The semi-analytical analysis show that the typical scale size of localized 3D KAW is of the order of ion gyroradius and that of the trapped whistler is even less than that. The relevance of the results is also pointed out in the context of the recent CLUSTER observations in magnetized plasmas where whistler waves have been detected along with coherent ion-scale magnetic structures.

  11. Extraterrestrial Helium (He@C60) Trapped in Fullerenes in the Sudbury Impact Structure

    NASA Technical Reports Server (NTRS)

    Becker, L.; Bada, J. L.; Poreda, R. J.; Bunch, T. E.

    1997-01-01

    Fullerenes (C60 and C70) have recently been identified in a shock-produced breccia (Onaping Formation) associated with the 1.85-Ga Sudbury Impact Crater. The presence of parts-per-million levels of fullerenes in this impact structure raises interesting questions about the processes that led to the formation of fullerenes and the potential for delivery of intact organic material to the Earth by a large bolide (e.g., asteroid or comet). Two possible scenarios for the presence of fullerenes in the Sudbury impact deposits are that (1) fullerenes are synthesized within the impact plume from the C contained in the bolide; or (2) fullerenes are already present in the bolide and survived the impact event. The correlation of C and trapped noble gas atoms in meteorites is well established. Primitive meteorites contain several trapped noble gas components that have anomalous isotopic compositions, some of which may have a presolar origin. Several C-bearing phases, including SiC, graphite, and diamond, have been recognized as carriers of trapped noble gases. It has also been suggested that fullerenes (C60 and C70) might be a carrier of noble gas components in carbonaceous chondrites. Recently, fullerenes have been detected in separate samples in the Allende meteorite. Carbon-60 is large enough to enclose the noble gases He, Ne, Ar, Kr, and Xe, but it is too small to contain diatomic gases such as N2 or triatomic gases such as CO2. Recent experimental work has demonstrated that noble gases of a specific isotopic composition can be introduced into synthetic fullerenes at high temperatures and pressures; these encapsulated gases can then be released by the breaking of one or more C bonds during step-heating under vacuum. These thermal-release patterns for He encapsulated within the C60 molecule (He@C60) are similar to the patterns for acid residues of carbonaceous chondrites, suggesting that fullerenes could be an additional carrier of trapped noble gases in acid residues of

  12. Superdeformed nuclei: Shells-vs-liquid drop, pairing-vs-thermal excitations, triaxial-vs-octupole shapes, super-superdeformation

    SciTech Connect

    Dudek, J.

    1987-01-01

    Mechanisms influencing the behavior of superdeformed nuclei are studied using several well established nuclear structure techniques. In particular: pairing, thermal excitation, shell and liquid-drop mechanisms are considered. The effects of quadrupole and hexadecapole (both axial and non-axial), and octupole deformation degrees of freedom are studied. Most of the results are illustrated using the case of /sup 152/Dy nucleus in which a superdeformed band extending up to I approx. 60 h-bar has been found in experiment. Some comparisons between /sup 152/Dy and the nuclei in the neighborhood are given. Calculations show that pairing ''de-aligns'' typically 6 to 8 units of angular momentum, as compared to the corresponding rigid rotation. This takes place for spins extending up to the highest limit, and thus diminishes the effective moments of inertia. Predicted octupole shape susceptibility is extremely large, significantly stronger than the susceptibilities known in the ground-states of many Actinide nuclei. Consequences of this result for the near-constancy of the dynamical moments of inertia are pointed out. Nuclear level densities calculated in function of spin, excitation energy and deformation explain the ''unusual'' side feeding pattern of the /sup 152/Dy superdeformed states. Predictions of super-superdeformed nuclear states (axis ratio varying between 2:1 and 3:1 or more) are given and exemplified for Erbium nuclei. Finally, the problem of superdeformation stability and the influence of increased collective inertia on a barrier penetration are examined. An analytical expression for the effective inertia parameter is obtained and its derivation outlined. 35 refs., 9 figs.

  13. Octupole deformation in 144,146Ba measured by Coulomb excitation of radioactive beams

    NASA Astrophysics Data System (ADS)

    Bucher, Brian; Zhu, Shaofei; ANL, LBNL, LLNL, Rochester, Florida State, Liverpool, Maryland, Notre Dame, Ohio, W. Scotland Collaboration

    2015-10-01

    The exotic, neutron-rich 144Ba (t1 / 2 = 11.5 s) and 146Ba (t1 / 2 = 2.2 s) nuclei are expected to exhibit some of the strongest octupole correlations in A < 200 systems. Up to now, evidence for such strong octupole correlations has been inferred from observations of low-lying negative-parity states and from the interleaving of positive- and negative-parity levels in the ground-state band. However, the E1 transition strengths are very different in these two nuclei, with two orders of magnitude reduction in 146Ba. In this experiment, we measure the octupole strength directly by Coulomb excitation of post-accelerated 144,146Ba beams produced at CARIBU using CHICO2 and GRETINA. In 144Ba, we found B(E3;3 -->0) = 48(-34+ 25) W.u., a value considerably larger than theoretical predictions, while preliminary results for 146Ba are also indicative of strong octupole collectivity. The experimental conditions, the analysis, and the results from these challenging new measurements will be presented. This work is supported by the U.S. Department of Energy, Office of Nuclear Physics, under Contract No. DE-AC02-06CH11357 (ANL), DE-AC02-05CH11231 (LBNL, GRETINA), DOE DE-AC52-07NA27344 (LLNL), and NSF.

  14. Direct evidence of octupole deformation in neutron-rich 144Ba

    DOE PAGESBeta

    Bucher, B.; Zhu, S.; Wu, C. Y.; Janssens, R. V. F.; Cline, D.; Hayes, A. B.; Albers, M.; Ayangeakaa, A. D.; Butler, P. A.; Campbell, C. M.; et al

    2016-03-17

    Here, the neutron-rich nucleus 144Ba (t1/2 = 11.5 s) is expected to exhibit some of the strongest octupole correlations among nuclei with mass numbers A less than 200. Until now, indirect evidence for such strong correlations has been inferred from observations such as enhanced E1 transitions and interleaving positive- and negative-parity levels in the ground-state band. In this experiment, the octupole strength was measured directly by sub-barrier, multistep Coulomb excitation of a post-accelerated 650-MeV 144Ba beam on a 1.0–mg/cm2 208Pb target. The measured value of the matrix element, < 31–∥M(E3)∥01+ >= 0.65(+17–23) eb3/2, corresponds to a reduced B(E3) transition probabilitymore » of 48(+25–34) W.u. This result represents an unambiguous determination of the octupole collectivity, is larger than any available theoretical prediction, and is consistent with octupole deformation.« less

  15. Octupole Resonance in the AGS at High Intensity: A SIMBAD study

    SciTech Connect

    Luccio, A.U.; D'Imperio, N.L.

    2005-06-08

    We studied the Octupole (Montague) resonance in the AGS, in its high intensity mode, by tracking with the PIC code SIMBAD. We calculated, turn-by-turn, the betatron tune footprint from the eigenvalues of the one-turn matrix. We show that one should exercise particular caution when the betatron tunes are close together, since the matrix gives ambiguous results at the resonance.

  16. Betatron tune spread generation and differential chromaticity control by octupole families at Tevatron

    SciTech Connect

    Ivanov, P.M.; Alexahin, Y.; Annala, J.; Lebedev, V.A.; /Fermilab

    2005-05-01

    Existing Tevatron octupoles have been rearranged into four functional families. Two of these families generate betatron tune spreads in the vertical and horizontal planes whereas the other two control the differential chromaticity between the proton and antiproton helices. The calculated effect on the tunes and chromaticity is compared with direct measurements. Analytical formulas for betatron tune distribution functions are presented.

  17. Direct Evidence of Octupole Deformation in Neutron-Rich 144Ba

    NASA Astrophysics Data System (ADS)

    Bucher, B.; Zhu, S.; Wu, C. Y.; Janssens, R. V. F.; Cline, D.; Hayes, A. B.; Albers, M.; Ayangeakaa, A. D.; Butler, P. A.; Campbell, C. M.; Carpenter, M. P.; Chiara, C. J.; Clark, J. A.; Crawford, H. L.; Cromaz, M.; David, H. M.; Dickerson, C.; Gregor, E. T.; Harker, J.; Hoffman, C. R.; Kay, B. P.; Kondev, F. G.; Korichi, A.; Lauritsen, T.; Macchiavelli, A. O.; Pardo, R. C.; Richard, A.; Riley, M. A.; Savard, G.; Scheck, M.; Seweryniak, D.; Smith, M. K.; Vondrasek, R.; Wiens, A.

    2016-03-01

    The neutron-rich nucleus 144Ba (t1 /2=11.5 s ) is expected to exhibit some of the strongest octupole correlations among nuclei with mass numbers A less than 200. Until now, indirect evidence for such strong correlations has been inferred from observations such as enhanced E 1 transitions and interleaving positive- and negative-parity levels in the ground-state band. In this experiment, the octupole strength was measured directly by sub-barrier, multistep Coulomb excitation of a post-accelerated 650-MeV 144Ba beam on a 1.0 -mg /cm2 208Pb target. The measured value of the matrix element, ⟨31 -∥M (E 3 )∥01 +⟩=0.65 (+17/-23) e b3 /2, corresponds to a reduced B (E 3 ) transition probability of 48 (+25/-34) W .u . This result represents an unambiguous determination of the octupole collectivity, is larger than any available theoretical prediction, and is consistent with octupole deformation.

  18. Direct Evidence of Octupole Deformation in Neutron-Rich ^{144}Ba.

    PubMed

    Bucher, B; Zhu, S; Wu, C Y; Janssens, R V F; Cline, D; Hayes, A B; Albers, M; Ayangeakaa, A D; Butler, P A; Campbell, C M; Carpenter, M P; Chiara, C J; Clark, J A; Crawford, H L; Cromaz, M; David, H M; Dickerson, C; Gregor, E T; Harker, J; Hoffman, C R; Kay, B P; Kondev, F G; Korichi, A; Lauritsen, T; Macchiavelli, A O; Pardo, R C; Richard, A; Riley, M A; Savard, G; Scheck, M; Seweryniak, D; Smith, M K; Vondrasek, R; Wiens, A

    2016-03-18

    The neutron-rich nucleus ^{144}Ba (t_{1/2}=11.5  s) is expected to exhibit some of the strongest octupole correlations among nuclei with mass numbers A less than 200. Until now, indirect evidence for such strong correlations has been inferred from observations such as enhanced E1 transitions and interleaving positive- and negative-parity levels in the ground-state band. In this experiment, the octupole strength was measured directly by sub-barrier, multistep Coulomb excitation of a post-accelerated 650-MeV ^{144}Ba beam on a 1.0-mg/cm^{2} ^{208}Pb target. The measured value of the matrix element, ⟨3_{1}^{-}∥M(E3)∥0_{1}^{+}⟩=0.65(+17/-23) eb^{3/2}, corresponds to a reduced B(E3) transition probability of 48(+25/-34)  W.u. This result represents an unambiguous determination of the octupole collectivity, is larger than any available theoretical prediction, and is consistent with octupole deformation. PMID:27035298

  19. Observation of hyperfine mixing in measurements of a magnetic octupole decay in isotopically pure nickel-like 129Xe and 132Xe ions

    SciTech Connect

    Trabert, E; Beiersdorfer, P; Brown, G V

    2006-12-21

    We present measurements of high statistical significance of the rate of the magnetic octupole (M3) decay in nickel-like ions of isotopically pure {sup 129}Xe and {sup 132}Xe. On {sup 132}Xe, an isotope with zero nuclear spin and therefore without hyperfine structure, the lifetime of the metastable level was established as (15.06 {+-} 0.24) ms. On {sup 129}Xe, an additional fast (2.7 {+-} 0.1 ms) decay component was established that represents hyperfine mixing with a level that decays by electric quadrupole (E2) radiation.

  20. Mismatch repair inhibits homeologous recombination via coordinated directional unwinding of trapped DNA structures.

    PubMed

    Tham, Khek-Chian; Hermans, Nicolaas; Winterwerp, Herrie H K; Cox, Michael M; Wyman, Claire; Kanaar, Roland; Lebbink, Joyce H G

    2013-08-01

    Homeologous recombination between divergent DNA sequences is inhibited by DNA mismatch repair. In Escherichia coli, MutS and MutL respond to DNA mismatches within recombination intermediates and prevent strand exchange via an unknown mechanism. Here, using purified proteins and DNA substrates, we find that in addition to mismatches within the heteroduplex region, secondary structures within the displaced single-stranded DNA formed during branch migration within the recombination intermediate are involved in the inhibition. We present a model that explains how higher-order complex formation of MutS, MutL, and DNA blocks branch migration by preventing rotation of the DNA strands within the recombination intermediate. Furthermore, we find that the helicase UvrD is recruited to directionally resolve these trapped intermediates toward DNA substrates. Thus, our results explain on a mechanistic level how the coordinated action between MutS, MutL, and UvrD prevents homeologous recombination and maintains genome stability. PMID:23932715

  1. Symmetry of the CMB sky as a new test of its statistical isotropy. Non cosmological octupole?

    SciTech Connect

    Naselsky, P.; Hansen, M.; Kim, J. E-mail: kirstejn@nbi.dk

    2011-09-01

    In this article we propose a novel test for statistical anisotropy of the CMB ΔT( n-circumflex = (θ,φ)). The test is based on the fact, that the Galactic foregrounds have a remarkably strong symmetry with respect to their antipodal points with respect to the Galactic plane, while the cosmological signal should not be symmetric or asymmetric under these transitions. We have applied the test for the octupole component of the WMAP ILC 7 map, by looking at a{sub 3,1} and a{sub 3,3}, and their ratio to a{sub 3,2} both for real and imaginary values. We find abnormal symmetry of the octupole component at the level of 0.58%, compared to Monte Carlo simulations. By using the analysis of the phases of the octupole we found remarkably strong cross-correlations between the phases of the kinematic dipole and the ILC 7 octupole, in full agreement with previous results. We further test the multipole range 2 < l < 100, by investigating the ratio between the l+m = even and l+m = odd parts of power spectra. We compare the results to simulations of a Gaussian random sky, and find significant departure from the statistically isotropic and homogeneous case, for a very broad range of multipoles. We found that for the most prominent peaks of our estimator, the phases of the corresponding harmonics are coherent with phases of the octupole. We believe, our test would be very useful for detections of various types of residuals of the foreground and systematic effects at a very broad range of multipoles 2 ≤ l ≤ 1500−3000 for the forthcoming PLANCK CMB map, before any conclusions about primordial non-Gaussianity and statistical anisotropy of the CMB.

  2. Impact of structural heterogeneity on upscaled models for large-scale CO2 migration and trapping in saline aquifers

    NASA Astrophysics Data System (ADS)

    Gasda, Sarah E.; Nilsen, Halvor M.; Dahle, Helge K.

    2013-12-01

    Structural heterogeneity of the caprock surface influences both migration patterns and trapping efficiency for CO2 injected in open saline aquifers. Understanding these mechanisms relies on appropriate modeling tools to simulate CO2 flow over hundreds of square kilometers and several hundred years during the postinjection period. Vertical equilibrium (VE) models are well suited for this purpose. However, topographical heterogeneity below the scale of model resolution requires upscaling, for example by using traditional flow-based homogenization techniques. This can significantly simplify the geologic model and reduce computational effort while still capturing the relevant physical processes. In this paper, we identify key structural parameters, such as dominant amplitude and wavelength of the traps, that determine the form of the upscaled constitutive functions. We also compare the strength of these geologic controls on CO2 migration and trapping to other mechanisms such as capillarity. This allows for a better understanding of the dominant physical processes and their impact on storage security. It also provides intuition on which upscaling approach is best suited for the system of interest. We apply these concepts to realistic structurally heterogeneous surfaces that have been developed using different geologic depositional models. We show that while amplitude is important for determining the amount of CO2 trapped, the spacing between the traps, distribution of spillpoint locations, large-scale formation dip angle affect the shape of the functions and thus the dynamics of plume migration. We also show for these cases that the topography characterized by shorter wavelength features is better suited for upscaling, while the longer wavelength surface can be sufficiently resolved. These results can inform the type of geological characterization that is required to build the most reliable upscaled models for large-scale CO2 migration.

  3. Observation of structural relaxation during exciton self-trapping via excited-state resonant impulsive stimulated Raman spectroscopy

    SciTech Connect

    Mance, J. G.; Felver, J. J.; Dexheimer, S. L.

    2015-02-28

    We detect the change in vibrational frequency associated with the transition from a delocalized to a localized electronic state using femtosecond vibrational wavepacket techniques. The experiments are carried out in the mixed-valence linear chain material [Pt(en){sub 2}][Pt(en){sub 2}Cl{sub 2}]⋅(ClO{sub 4}){sub 4} (en = ethylenediamine, C{sub 2}H{sub 8}N{sub 2}), a quasi-one-dimensional system with strong electron-phonon coupling. Vibrational spectroscopy of the equilibrated self-trapped exciton is carried out using a multiple pulse excitation technique: an initial pump pulse creates a population of delocalized excitons that self-trap and equilibrate, and a time-delayed second pump pulse tuned to the red-shifted absorption band of the self-trapped exciton impulsively excites vibrational wavepacket oscillations at the characteristic vibrational frequencies of the equilibrated self-trapped exciton state by the resonant impulsive stimulated Raman mechanism, acting on the excited state. The measurements yield oscillations at a frequency of 160 cm{sup −1} corresponding to a Raman-active mode of the equilibrated self-trapped exciton with Pt-Cl stretching character. The 160 cm{sup −1} frequency is shifted from the previously observed wavepacket frequency of 185 cm{sup −1} associated with the initially generated exciton and from the 312 cm{sup −1} Raman-active symmetric stretching mode of the ground electronic state. We relate the frequency shifts to the changes in charge distribution and local structure that create the potential that stabilizes the self-trapped state.

  4. Observation of structural relaxation during exciton self-trapping via excited-state resonant impulsive stimulated Raman spectroscopy.

    PubMed

    Mance, J G; Felver, J J; Dexheimer, S L

    2015-02-28

    We detect the change in vibrational frequency associated with the transition from a delocalized to a localized electronic state using femtosecond vibrational wavepacket techniques. The experiments are carried out in the mixed-valence linear chain material [Pt(en)2][Pt(en)2Cl2]⋅(ClO4)4 (en = ethylenediamine, C2H8N2), a quasi-one-dimensional system with strong electron-phonon coupling. Vibrational spectroscopy of the equilibrated self-trapped exciton is carried out using a multiple pulse excitation technique: an initial pump pulse creates a population of delocalized excitons that self-trap and equilibrate, and a time-delayed second pump pulse tuned to the red-shifted absorption band of the self-trapped exciton impulsively excites vibrational wavepacket oscillations at the characteristic vibrational frequencies of the equilibrated self-trapped exciton state by the resonant impulsive stimulated Raman mechanism, acting on the excited state. The measurements yield oscillations at a frequency of 160 cm(-1) corresponding to a Raman-active mode of the equilibrated self-trapped exciton with Pt-Cl stretching character. The 160 cm(-1) frequency is shifted from the previously observed wavepacket frequency of 185 cm(-1) associated with the initially generated exciton and from the 312 cm(-1) Raman-active symmetric stretching mode of the ground electronic state. We relate the frequency shifts to the changes in charge distribution and local structure that create the potential that stabilizes the self-trapped state. PMID:25725733

  5. Artificially Structured Boundary For Antihydrogen Studies

    SciTech Connect

    Ordonez, C. A.

    2011-06-01

    It may be possible to confine antiprotons using an artificially structured boundary, as part of a process for synthesizing antihydrogen. An artificially structured boundary is defined at present as one that produces a spatially periodic static field, such that the spatial period and range of the field is much smaller than the dimensions of a cloud, plasma or beam of charged particles that is confined by the boundary. A modified Kingdon trap could employ an artificially structured boundary at the location of inner electrodes. The artificially structured boundary would produce a multipole magnetic field that keeps confined particles from reaching the inner electrodes. The magnetic field would be sufficiently short in range to affect the particle trajectories only in close proximity to the inner electrodes. The conditions for producing such a magnetic field have been assessed. The results indicate that the magnetic field must be an octupole or higher order field.

  6. Decay of quadrupole-octupole 1- states in 40Ca and 140Ce

    NASA Astrophysics Data System (ADS)

    Derya, V.; Tsoneva, N.; Aumann, T.; Bhike, M.; Endres, J.; Gooden, M.; Hennig, A.; Isaak, J.; Lenske, H.; Löher, B.; Pietralla, N.; Savran, D.; Tornow, W.; Werner, V.; Zilges, A.

    2016-03-01

    Background: Two-phonon excitations originating from the coupling of two collective one-phonon states are of great interest in nuclear structure physics. One possibility to generate low-lying E 1 excitations is the coupling of quadrupole and octupole phonons. Purpose: In this work, the γ -decay behavior of candidates for the (21+⊗31-)1- state in the doubly magic nucleus 40Ca and in the heavier and semimagic nucleus 140Ce is investigated. Methods: (γ ⃗,γ') experiments have been carried out at the High Intensity γ -ray Source (HI γ S ) facility in combination with the high-efficiency γ -ray spectroscopy setup γ3 consisting of HPGe and LaBr3 detectors. The setup enables the acquisition of γ -γ coincidence data and, hence, the detection of direct decay paths. Results: In addition to the known ground-state decays, for 40Ca the decay into the 31- state was observed, while for 140Ce the direct decays into the 21+ and the 02+ state were detected. The experimentally deduced transition strengths and excitation energies are compared to theoretical calculations in the framework of EDF theory plus QPM approach and systematically analyzed for N =82 isotones. In addition, negative parities for two J =1 states in 44Ca were deduced simultaneously. Conclusions: The experimental findings together with the theoretical calculations support the two-phonon character of the 11- excitation in the light-to-medium-mass nucleus 40Ca as well as in the stable even-even N =82 nuclei.

  7. Universal, non-monotonic structure in the saturation curves of a linear Paul trap

    NASA Astrophysics Data System (ADS)

    Wells, James; Kwolek, Jonathan; Goodman, Douglas; Blümel, Reinhold; Smith, Winthrop

    2016-05-01

    A common technique to measure ion-atom collision rates in a hybrid trap if the ions have no optical transitions (e.g. alkalis) is to monitor the fluorescence of the neutrals in the presence of a saturated linear Paul trap (LPT). We present numerical simulations, analytical calculations, and experimental results that show that the steady-state ion capacity of an LPT, Ns, exhibits nonlinear, nonmonotonic behavior as a function of ion loading rate, Λ. The steady state as a function of loading rate, Ns(Λ) , shows four distinct regions. In Region I, at the lowest Λ, Ns(Λ) increases monotonically. Then, Ns(Λ) reaches a plateau in Region II, before decreasing to a local minimum in Region III. Finally, in Region IV, Ns(Λ) once again increases monotonically. This behavior appears universal to any Paul trap, regardless of geometry or species trapped. We examine this behavior experimentally as a function of the q stability parameter of the Paul trap and simulate numerically the effect of the particular trap geometry on the onset of each of the four regions. Funding from NSF Grant PHY-1307874.

  8. Role of bioengineering structures made of willow cuttings in marly sediment trapping: a real size experiment in the Francon catchment

    NASA Astrophysics Data System (ADS)

    Rey, Freddy; Labonne, Sophie

    2013-04-01

    Improving the understanding of the role of vegetation and bioengineering structures on erosion and sedimentation control is a key issue today for the scientific community working both in geosciences and restoration ecology. In the Southern French Alps, ecological rehabilitation works were carried out in April 2008 in a marly basin (Francon, 73 ha) belonging to an experimental catchment of the Draix-Bléone complex, labellized Observatoire of Research in Environment (ORE). It focused on 30 gullies on 20 ha and consisted in the set-up of 672 bioengineering structures of two different types: brush layers of cuttings on deadwood microdams (BL) and brush layers and brush mats of cuttings on deadwood microdams (BLM). 25.000 cuttings of willows (Salix purpurea and S. eleagnos) were used for this purpose. Our objective was to validate former results and to improve the knowledge on the performance of bioengineering structures for sediment trapping during heavy rainfall events. Measurements were made on 305 structures (38 BL and 267 BLM) in 25 gullies. After 5 years (2008 to 2012), results revealed a mean annual trapping of 0.05 m3.yr-1 of sediment per structure, with 0.03 m3.yr-1 for BL and 0.06 m3.yr-1 for BLM. These results show lower values compared to those obtained in previous studies, due to damages on a large part of the structures by high intensity rainfall events. These damages have been mainly observed in case of low vegetation cover on gully sides and when gully floors showed steep slopes. On opposite cases, works were not damaged due to vegetation roughness which limits runoff concentration. We observed that 78 of these structures annually trapped more than 0.05 m3, with maximum values of up to 0.25 m3 per structure, thus showing the potential of efficient structures for sediment trapping. The bioengineering strategy has therefore been improved by implanting vegetation on bare gully sides to avoid damages and allow efficient sediment trapping. Measurements will

  9. The nature of the TRAP-Anti-TRAP complex.

    PubMed

    Watanabe, Masahiro; Heddle, Jonathan G; Kikuchi, Kenichi; Unzai, Satoru; Akashi, Satoko; Park, Sam-Yong; Tame, Jeremy R H

    2009-02-17

    Tryptophan biosynthesis is subject to exquisite control in species of Bacillus and has become one of the best-studied model systems in gene regulation. The protein TRAP (trp RNA-binding attenuation protein) predominantly forms a ring-shaped 11-mer, which binds cognate RNA in the presence of tryptophan to suppress expression of the trp operon. TRAP is itself regulated by the protein Anti-TRAP, which binds to TRAP and prevents RNA binding. To date, the nature of this interaction has proved elusive. Here, we describe mass spectrometry and analytical centrifugation studies of the complex, and 2 crystal structures of the TRAP-Anti-TRAP complex. These crystal structures, both refined to 3.2-A resolution, show that Anti-TRAP binds to TRAP as a trimer, sterically blocking RNA binding. Mass spectrometry shows that 11-mer TRAP may bind up to 5 AT trimers, and an artificial 12-mer TRAP may bind 6. Both forms of TRAP make the same interactions with Anti-TRAP. Crystallization of wild-type TRAP with Anti-TRAP selectively pulls the 12-mer TRAP form out of solution, so the crystal structure of wild-type TRAP-Anti-TRAP complex reflects a minor species from a mixed population. PMID:19164760

  10. INFLUENCE OF FILM STRUCTURE AND LIGHT ON CHARGE TRAPPING AND DISSIPATION DYNAMICS IN SPUN-CAST ORGANIC THIN-FILM TRANSISTORS MEASURED BY SCANNING KELVIN PROBE MICROSCOPY

    SciTech Connect

    Teague, L.; Moth, M.; Anthony, J.

    2012-05-03

    Herein, time-dependent scanning Kelvin probe microscopy of solution processed organic thin film transistors (OTFTs) reveals a correlation between film microstructure and OTFT device performance with the location of trapped charge within the device channel. The accumulation of the observed trapped charge is concurrent with the decrease in I{sub SD} during operation (V{sub G}=-40 V, V{sub SD}= -10 V). We discuss the charge trapping and dissipation dynamics as they relate to the film structure and show that application of light quickly dissipates the observed trapped charge.

  11. Numerical simulation of crosstalk in reduced pitch HgCdTe photon-trapping structure pixel arrays.

    PubMed

    Schuster, Jonathan; Bellotti, Enrico

    2013-06-17

    We have investigated crosstalk in HgCdTe photovoltaic pixel arrays employing a photon trapping (PT) structure realized with a periodic array of pillars intended to provide broadband operation. We have found that, compared to non-PT pixel arrays with similar geometry, the array employing the PT structure has a slightly higher optical crosstalk. However, when the total crosstalk is evaluated, the presence of the PT region drastically reduces the total crosstalk; making the use of the PT structure not only useful to obtain broadband operation, but also desirable for reducing crosstalk in small pitch detector arrays. PMID:23787659

  12. Coulomb Excitation with CARIBU Beams: Octupole Strength in 144Ba Measured with GRETINA and CHICO2

    NASA Astrophysics Data System (ADS)

    Bucher, Brian; Zhu, Shaofei; ANL, LBNL, LLNL, Rochester, Florida St, Liverpool, Maryland, Notre Dame, Ohio,; W. Scotland Collaboration

    2014-09-01

    The neutron-rich barium isotopes sit in one of the few mass regions on the nuclear chart observed to display octupole correlations. These isotopes are challenging to study since they lie far from stability and are thus difficult to produce in large quantities. In particular, this region is interesting for studying the evolution of octupole correlations since the enhancement of the E1 strength drops by an order of magnitude from 144Ba to 146Ba, where shell corrections appear to play a significant role. To provide unambiguous insight into the octupole correlations, B(E3) strengths have been measured using Coulomb excitation of 144Ba beams at 650 MeV on a 1 mg/cm2 208Pb target. This experiment represents the first successful measurement utilizing re-accelerated CARIBU beams combined with the γ-ray tracking array GRETINA and the auxiliary charged-particle detector CHICO2. Preliminary results from the experiment will be presented. The neutron-rich barium isotopes sit in one of the few mass regions on the nuclear chart observed to display octupole correlations. These isotopes are challenging to study since they lie far from stability and are thus difficult to produce in large quantities. In particular, this region is interesting for studying the evolution of octupole correlations since the enhancement of the E1 strength drops by an order of magnitude from 144Ba to 146Ba, where shell corrections appear to play a significant role. To provide unambiguous insight into the octupole correlations, B(E3) strengths have been measured using Coulomb excitation of 144Ba beams at 650 MeV on a 1 mg/cm2 208Pb target. This experiment represents the first successful measurement utilizing re-accelerated CARIBU beams combined with the γ-ray tracking array GRETINA and the auxiliary charged-particle detector CHICO2. Preliminary results from the experiment will be presented. This work is supported by the U.S. Department of Energy, Office of Nuclear Physics, under Contract No. DE-AC02-06CH

  13. The effect of trapping on hydrogen-induced plasticity and fracture in structural alloys

    NASA Technical Reports Server (NTRS)

    Bernstein, I. M.; Dollar, M.

    1990-01-01

    It has previously been noted that, for a given alloy system, microstructural manipulation may result in large variations in hydrogen susceptibility at a given strength level; it may even be possible to obtain inversions of susceptibility in which higher strengths may be associated with greater embrittlement resistance. An examination is presently conducted of the consequences of hydrogen-heterogeneity interactions, or 'trapping', in several alloy systems; these will include both conventional ferrous and nonferrous ones, and novel alloy systems. Deleterious trapping dominates behavior in the presence of large local concentrations of hydrogen; plasticity modifications due to hydrogen exercise a dominant influence on embrittlement susceptibility when relatively weak traps are present, as well as when a more uniform distribution of hydrogen is present.

  14. A differentially pumped dual linear quadrupole ion trap (DLQIT) mass spectrometer: a mass spectrometer capable of MS(n) experiments free from interfering reactions.

    PubMed

    Owen, Benjamin C; Jarrell, Tiffany M; Schwartz, Jae C; Oglesbee, Rob; Carlsen, Mark; Archibold, Enada F; Kenttämaa, Hilkka I

    2013-12-01

    A novel differentially pumped dual linear quadrupole ion trap (DLQIT) mass spectrometer was designed and built to facilitate tandem MS experiments free from interfering reactions. The instrument consists of two differentially pumped Thermo Scientific linear quadrupole ion trap (LQIT) systems that have been connected via an ion transfer octupole encased in a machined manifold. Tandem MS experiments can be performed in the front trap and then the resulting product ions can be transferred via axial ejection into the back trap for further, independent tandem MS experiments in a differentially pumped area. This approach allows the examination of consecutive collision-activated dissociation (CAD) and ion-molecule reactions without unwanted side reactions that often occur when CAD and ion-molecule reactions are examined in the same space. Hence, it greatly facilitates investigations of ion structures. In addition, the overall lower pressure of the DLQIT, as compared to commercial LQIT instruments, results in a reduction of unwanted side reactions with atmospheric contaminants, such as water and oxygen, in CAD and ion-molecule experiments. PMID:24171553

  15. Octupole deformation in the ground states of even-even nuclei: A global analysis within the covariant density functional theory

    NASA Astrophysics Data System (ADS)

    Agbemava, S. E.; Afanasjev, A. V.; Ring, P.

    2016-04-01

    A systematic investigation of octupole-deformed nuclei is presented for even-even systems with Z ≤106 located between the two-proton and two-neutron driplines. For this study we use five most-up-to-date covariant energy density functionals of different types, with a nonlinear meson coupling, with density-dependent meson couplings, and with density-dependent zero-range interactions. Pairing correlations are treated within relativistic Hartree-Bogoliubov theory based on an effective separable particle-particle interaction of finite range. This allows us to assess theoretical uncertainties within the present covariant models for the prediction of physical observables relevant for octupole-deformed nuclei. In addition, a detailed comparison with the predictions of nonrelativistic models is performed. A new region of octupole deformation, centered around Z ˜98 ,N ˜196 is predicted for the first time. In terms of its size in the (Z ,N ) plane and the impact of octupole deformation on binding energies this region is similar to the best known region of octupole-deformed nuclei centered at Z ˜90 ,N ˜136 . For the later island of octupole-deformed nuclei, the calculations suggest substantial increase of its size as compared with available experimental data.

  16. Evidence for charge-trapping inducing polymorphic structural-phase transition in pentacene.

    PubMed

    Ando, Masahiko; Kehoe, Tom B; Yoneya, Makoto; Ishii, Hiroyuki; Kawasaki, Masahiro; Duffy, Claudia M; Minakata, Takashi; Phillips, Richard T; Sirringhaus, Henning

    2015-01-01

    Trapped-charge-induced transformation of pentacene polymorphs is observed by using in situ Raman spectroscopy and molecular dynamics simulations reveal that the charge should be localized in pentacene molecules at the interface with static intermolecular disorder along the long axis. Quantum chemical calculations of the intermolecular transfer integrals suggest the disorder to be large enough to induce Anderson-type localization. PMID:25382806

  17. High Spin States and Octupole Deformation in Neutron-Rich ^145,147La Nuclei

    NASA Astrophysics Data System (ADS)

    Zhu, S. J.; Hamilton, J. H.; Ramayya, A. V.; Babu, B. R. S.; Jones, E. F.; Kormicki, J.; Daniel, A. V.; Hwang, J. K.; Beyer, C. J.; Wang, M. G.; Long, G. L.; Li, M.; Zhu, L. Y.; Gan, C. Y.; Ma, W. C.; Cole, J. D.; Aryaeinejad, R.; Dardenne, Y. X.; Drigert, M. W.; Rasmussen, J. O.; Asztalos, S.; Lee, I. Y.; Macchiavelli, A. O.; Chu, S. Y.; Gregorich, K. E.; Mohar, M. F.; Stoyer, M. A.; Lougheed, R. W.; Moody, K. J.; Wild, J. F.; Prussin, S. G.

    1998-04-01

    High spin states in neutron-rich odd-Z nuclei ^145,147La have been investigated from the study of prompt γ- rays in spontaneous fission of ^252Cf by using γ-γ- and γ-γ-γ- coincidence techniques. Alternating parity bands are extended up to spins I=(41/2) and I=(43/2) in ^145La and ^147La, respectively. Strong E1 transitions between the negative and positive parity bands give evidence for stable octupole deformation. The new higher spin levels give evidence for rotational enhancement of the stability of the octupole deformation. These collective bands show competition and co-existence between symmetric and asymmetric shapes in ^145La. Band crossing was found around hbarω≈ 0.26 ~0.30 MeV in both nuclei and these backbends are related to the alignment of two i_13/2 neutron from cranked shell model calculations.

  18. High-power ion-cyclotron heating on the levitated octupole

    SciTech Connect

    Dexter, R.N.; Fortgang, C.M.; Prager, S.C.; Sprott, J.C.; Strait, E.J.; Twichell, J.C.

    1982-03-01

    Experiments are underway in the Wisconsin Levitated Toroidal Octupole to create hot, dense plasmas to facilitate the study of ..beta.. limits and related phenomena such as Pfirsch-Schlueter and bootstrap currents. The question of ballooning mode instability limits on ..beta.. = 8 ..pi..nk(T/sub i/+T/sub e/)/B/sup 2/ is of general importance for all toroidal systems, and ICRF heating should permit study of high ..beta.. plasmas with lower collisionality and smaller gyroradii than those of the high ..beta.. gun-injected plasmas currently under study in the Octupole. To these ends we are developing sources capable of delivering 4 MW to the plasma (1.5 MW coupled to the plasma to date, the rest under development).

  19. Trapping a translocating protein within the anthrax toxin channel: implications for the secondary structure of permeating proteins

    PubMed Central

    Jennings-Antipov, Laura D.; Jakes, Karen S.; Finkelstein, Alan

    2011-01-01

    Anthrax toxin consists of three proteins: lethal factor (LF), edema factor (EF), and protective antigen (PA). This last forms a heptameric channel, (PA63)7, in the host cell’s endosomal membrane, allowing the former two (which are enzymes) to be translocated into the cytosol. (PA63)7 incorporated into planar bilayer membranes forms a channel that translocates LF and EF, with the N terminus leading the way. The channel is mushroom-shaped with a cap containing the binding sites for EF and LF, and an ∼100 Å–long, 15 Å–wide stem. For proteins to pass through the stem they clearly must unfold, but is secondary structure preserved? To answer this question, we developed a method of trapping the polypeptide chain of a translocating protein within the channel and determined the minimum number of residues that could traverse it. We attached a biotin to the N terminus of LFN (the 263-residue N-terminal portion of LF) and a molecular stopper elsewhere. If the distance from the N terminus to the stopper was long enough to traverse the channel, streptavidin added to the trans side bound the N-terminal biotin, trapping the protein within the channel; if this distance was not long enough, streptavidin did not bind the N-terminal biotin and the protein was not trapped. The trapping rate was dependent on the driving force (voltage), the length of time it was applied, and the number of residues between the N terminus and the stopper. By varying the position of the stopper, we determined the minimum number of residues required to span the channel. We conclude that LFN adopts an extended-chain configuration as it translocates; i.e., the channel unfolds the secondary structure of the protein. We also show that the channel not only can translocate LFN in the normal direction but also can, at least partially, translocate LFN in the opposite direction. PMID:21402886

  20. Mixed-symmetry octupole and hexadecapole excitations in N=52 isotones

    NASA Astrophysics Data System (ADS)

    Hennig, Andreas; Spieker, Mark; Werner, Volker; Ahn, Tan; Anagnostatou, Vassia; Cooper, Nathan; Derya, Vera; Elvers, Michael; Endres, Janis; Goddard, Phil; Heinz, Andreas; Hughes, Richard O.; Ilie, Gabriela; Mineva, Milena N.; Pickstone, Simon G.; Petkov, Pavel; Pietralla, Norbert; Radeck, Desirée; Ross, Tim J.; Savran, Deniz; Zilges, Andreas

    2015-05-01

    In addition to the well-established quadrupole mixed-symmetry states, octupole and hexadecapole excitations with mixed-symmetry character have been recently proposed for the N = 52 isotones 92Zr and 94Mo. We performed two inelastic proton-scattering experiments to study this kind of excitations in the heaviest stable N = 52 isotone 96Ru. From the combined experimental data of both experiments absolute transition strengths were extracted.

  1. 2.4 Å resolution crystal structure of human TRAP1NM, the Hsp90 paralog in the mitochondrial matrix.

    PubMed

    Sung, Nuri; Lee, Jungsoon; Kim, Ji Hyun; Chang, Changsoo; Tsai, Francis T F; Lee, Sukyeong

    2016-08-01

    TRAP1 is an organelle-specific Hsp90 paralog that is essential for neoplastic growth. As a member of the Hsp90 family, TRAP1 is presumed to be a general chaperone facilitating the late-stage folding of Hsp90 client proteins in the mitochondrial matrix. Interestingly, TRAP1 cannot replace cytosolic Hsp90 in protein folding, and none of the known Hsp90 co-chaperones are found in mitochondria. Thus, the three-dimensional structure of TRAP1 must feature regulatory elements that are essential to the ATPase activity and chaperone function of TRAP1. Here, the crystal structure of a human TRAP1NM dimer is presented, featuring an intact N-domain and M-domain structure, bound to adenosine 5'-β,γ-imidotriphosphate (ADPNP). The crystal structure together with epitope-mapping results shows that the TRAP1 M-domain loop 1 contacts the neighboring subunit and forms a previously unobserved third dimer interface that mediates the specific interaction with mitochondrial Hsp70. PMID:27487821

  2. Fabrication of broadband antireflective black metal surfaces with ultra-light-trapping structures by picosecond laser texturing and chemical fluorination

    NASA Astrophysics Data System (ADS)

    Zheng, Buxiang; Wang, Wenjun; Jiang, Gedong; Mei, Xuesong

    2016-06-01

    A hybrid method consisting of ultrafast laser-assisted texturing and chemical fluorination treatment was applied for efficiently enhancing the surface broadband antireflection to fabricate black titanium alloy surface with ultra-light-trapping micro-nanostructure. Based on the theoretical analysis of surface antireflective principle of micro-nanostructures and fluoride film, the ultra-light-trapping micro-nanostructures have been processed using a picosecond pulsed ultrafast laser on titanium alloy surfaces. Then fluorination treatment has been performed by using fluoroalkyl silane solution. According to X-ray diffraction phase analysis of the surface compositions and measurement of the surface reflectance using spectrophotometer, the broadband antireflective properties of titanium alloy surface with micro-nano structural characteristics were investigated before and after fluorination treatment. The results show that the surface morphology of micro-nanostructures processed by picosecond laser has significant effects on the antireflection of light waves to reduce the surface reflectance, which can be further reduced using chemical fluorination treatment. The high antireflection of over 98 % in a broad spectral range from ultraviolet to infrared on the surface of metal material has been achieved for the surface structures, and the broadband antireflective black metal surfaces with an extremely low reflectance of ultra-light-trapping structures have been obtained in the wavelength range from ultraviolet-visible to near-infrared, middle-wave infrared. The average reflectance of microgroove groups structured surface reaches as low as 2.43 % over a broad wavelength range from 200 to 2600 nm. It indicates that the hybrid method comprising of picosecond laser texturing and chemical fluorination can effectively induce the broadband antireflective black metal surface. This method has a potential application for fabricating antireflective surface used to improve the

  3. Mathieu Function Solutions for the Photoacoustic Effect in Two- and Three-Dimensional Structures and Optical Traps

    NASA Astrophysics Data System (ADS)

    Wu, Binbin; Diebold, Gerald J.

    2012-11-01

    The wave equation for the photoacoustic effect in a three-dimensional spherically symmetric, or two-dimensional structure where the compressibility or density varies sinusoidally in space reduces to an inhomogeneous Mathieu equation. As such, exact solutions for the photoacoustic pressure can be found in terms of either Mathieu functions, integer order Mathieu functions, or fractional order Mathieu functions, the last of these being of importance for problems pertaining to structures of finite dimensions. Here, frequency domain solutions are given for a spherical structure with material properties varying radially, and a two-dimensional structure with material variations in one direction. Solutions for the acoustic pressure are found that give closed form expressions for the resonance frequencies. It is also shown that Mathieu functions give solutions for the motion of an optically levitated sphere trapped in an intensity modulated, Gaussian laser beam. By determining the frequencies at which the motions of the sphere are largest, that is, where the Mathieu functions become unstable, it is shown that the trap can act to determine the radiation force relative to the gravitational force on the sphere.

  4. The impact of pore structure and surface roughness on capillary trapping for 2-D and 3-D porous media: Comparison with percolation theory

    NASA Astrophysics Data System (ADS)

    Geistlinger, Helmut; Ataei-Dadavi, Iman; Mohammadian, Sadjad; Vogel, Hans-Jörg

    2015-11-01

    We study the impact of pore structure and surface roughness on capillary trapping of nonwetting gas phase during imbibition with water for capillary numbers between 10-7 and 5 × 10-5, within glass beads, natural sands, glass beads monolayers, and 2-D micromodels. The materials exhibit different roughness of the pore-solid interface. We found that glass beads and natural sands, which exhibit nearly the same grain size distribution, pore size distribution, and connectivity, showed a significant difference of the trapped gas phase of about 15%. This difference can be explained by the microstructure of the pore-solid interface. Based on the visualization of the trapping dynamics within glass beads monolayers and 2-D micromodels, we could show that bypass trapping controls the trapping process in glass beads monolayers, while snap-off trapping controls the trapping process in 2-D micromodels. We conclude that these different trapping processes are the reason for the different trapping efficiency, when comparing glass beads packs with natural sand packs. Moreover, for small capillary numbers of 10-6, we found that the cluster size distribution of trapped gas clusters of all 2-D and 3-D porous media can be described by a universal power law behavior predicted from percolation theory. This cannot be expected a priori for 2-D porous media, because bicontinuity of the two bulk phases is violated. Obviously, bicontinuity holds for the thin-film water phase and the bulk gas phase. The snap-off trapping process leads to ordinary bond percolation in front of the advancing bulk water phase and is the reason for the observed universal power law behavior in 2-D micromodels with rough surfaces.

  5. Trapped Surfaces

    NASA Astrophysics Data System (ADS)

    Senovilla, José M. M.

    I review the definition and types of (closed) trapped surfaces. Surprising global properties are shown, such as their "clairvoyance" and the possibility that they enter into flat portions of the spacetime. Several results on the interplay of trapped surfaces with vector fields and with spatial hypersurfaces are presented. Applications to the quasi-local definition of Black Holes are discussed, with particular emphasis set onto marginally trapped tubes, trapping horizons and the boundary of the region with closed trapped surfaces. Finally, the core of a trapped region is introduced, and its importance discussed.

  6. Trapped Surfaces

    NASA Astrophysics Data System (ADS)

    Senovilla, José M. M.

    2013-03-01

    I review the definition and types of (closed) trapped surfaces. Surprising global properties are pointed out, such as their "clairvoyance" and the possibility that they enter into flat portions of the spacetime. Several results on the interplay of trapped surfaces with vector fields and with spatial hypersurfaces are presented. Applications to the quasi-local definition of Black Holes are analyzed, with particular emphasis set onto marginally trapped tubes, trapping horizons and the boundary of the region with closed trapped surfaces. Finally, the core of a trapped region is introduced, and its importance briefly discussed.

  7. An experimental technique for the study of non-avalanche charge injection or trapping in MIS structures

    NASA Astrophysics Data System (ADS)

    Kolk, J.; Heasell, E.

    1980-03-01

    In the study of charge injection in the insulator-silicon system, variation of the electric field in the insulator, caused by charge trapping during a measurement, makes the interpretation and analysis of experimental data difficult. A measuring system and test device structure are described in which it is possible to monitor any change of the device threshold voltage and to adjust the applied gate voltage so as to maintain a constant electric field at the insulator-silicon interface. Experimental results will be presented which show the advantages stemming from this mode of operation.

  8. Nanophotonic light trapping in polycrystalline silicon thin-film solar cells using periodically nanoimprint-structured glass substrates

    NASA Astrophysics Data System (ADS)

    Becker, Christiane; Xavier, Jolly; Preidel, Veit; Wyss, Philippe; Sontheimer, Tobias; Rech, Bernd; Probst, Jürgen; Hülsen, Christoph; Löchel, Bernd; Erko, Alexei; Burger, Sven; Schmidt, Frank; Back, Franziska; Rudigier-Voigt, Eveline

    2013-09-01

    A smart light trapping scheme is essential to tap the full potential of polycrystalline silicon (poly-Si) thin-film solar cells. Periodic nanophotonic structures are of particular interest as they allow to substantially surpass the Lambertian limit from ray optics in selected spectral ranges. We use nanoimprint-lithography for the periodic patterning of sol-gel coated glass substrates, ensuring a cost-effective, large-area production of thin-film solar cell devices. Periodic crystalline silicon nanoarchitectures are prepared on these textured substrates by high-rate silicon film evaporation, solid phase crystallization and chemical etching. Poly-Si microhole arrays in square lattice geometry with an effective thickness of about 2μm and with comparatively large pitch (2 μm) exhibit a large absorption enhancement (A900nm = 52%) compared to a planar film (A900nm ~ 7%). For the optimization of light trapping in the desired spectral region, the geometry of the nanophotonic structures with varying pitch from 600 nm to 800 nm is tailored and investigated for the cases of poly-Si nanopillar arrays of hexagonal lattice geometry, exhibiting an increase in absorption in comparison to planar film attributed to nanophotonic wave optic effects. These structures inspire the design of prospective applications such as highly-efficient nanostructured poly-Si thin-film solar cells and large-area photonic crystals.

  9. Evaluation of Quantum Efficiency, Crosstalk, and Surface Recombination in HgCdTe Photon-Trapping Structures

    NASA Astrophysics Data System (ADS)

    Schuster, Jonathan; Bellotti, Enrico

    2014-08-01

    The quantum efficiency (QE) in HgCdTe photovoltaic pixel arrays employing a photon-trapping (PT) structure realized with a periodic array of pillars intended to provide broadband operation was investigated. It was found that the QE depends heavily on the passivation of the pillar surface. This is due to the presence of large fixed positive charge on the surface of pillars passivated with anodic oxide. A three-dimensional numerical simulation model was used to study the effect of the surface charge density and surface recombination velocity on the exterior of the pillars. Then, the QE of this structure was evaluated subject to different surface conditions. It was found that alone the surface charge density or surface recombination is detrimental to the QE but that the QE is recovered when both phenomena are present. Subsequently, the crosstalk was analyzed and the superior performance of the PT structure was demonstrated by evaluating the modulation transfer function.

  10. Trapped antihydrogen.

    PubMed

    Andresen, G B; Ashkezari, M D; Baquero-Ruiz, M; Bertsche, W; Bowe, P D; Butler, E; Cesar, C L; Chapman, S; Charlton, M; Deller, A; Eriksson, S; Fajans, J; Friesen, T; Fujiwara, M C; Gill, D R; Gutierrez, A; Hangst, J S; Hardy, W N; Hayden, M E; Humphries, A J; Hydomako, R; Jenkins, M J; Jonsell, S; Jørgensen, L V; Kurchaninov, L; Madsen, N; Menary, S; Nolan, P; Olchanski, K; Olin, A; Povilus, A; Pusa, P; Robicheaux, F; Sarid, E; el Nasr, S Seif; Silveira, D M; So, C; Storey, J W; Thompson, R I; van der Werf, D P; Wurtele, J S; Yamazaki, Y

    2010-12-01

    Antimatter was first predicted in 1931, by Dirac. Work with high-energy antiparticles is now commonplace, and anti-electrons are used regularly in the medical technique of positron emission tomography scanning. Antihydrogen, the bound state of an antiproton and a positron, has been produced at low energies at CERN (the European Organization for Nuclear Research) since 2002. Antihydrogen is of interest for use in a precision test of nature's fundamental symmetries. The charge conjugation/parity/time reversal (CPT) theorem, a crucial part of the foundation of the standard model of elementary particles and interactions, demands that hydrogen and antihydrogen have the same spectrum. Given the current experimental precision of measurements on the hydrogen atom (about two parts in 10(14) for the frequency of the 1s-to-2s transition), subjecting antihydrogen to rigorous spectroscopic examination would constitute a compelling, model-independent test of CPT. Antihydrogen could also be used to study the gravitational behaviour of antimatter. However, so far experiments have produced antihydrogen that is not confined, precluding detailed study of its structure. Here we demonstrate trapping of antihydrogen atoms. From the interaction of about 10(7) antiprotons and 7 × 10(8) positrons, we observed 38 annihilation events consistent with the controlled release of trapped antihydrogen from our magnetic trap; the measured background is 1.4 ± 1.4 events. This result opens the door to precision measurements on anti-atoms, which can soon be subjected to the same techniques as developed for hydrogen. PMID:21085118

  11. Volume calculation of subsurface structures and traps in hydrocarbon exploration — a comparison between numerical integration and cell based models

    NASA Astrophysics Data System (ADS)

    Slavinić, Petra; Cvetković, Marko

    2016-01-01

    The volume calculation of geological structures is one of the primary goals of interest when dealing with exploration or production of oil and gas in general. Most of those calculations are done using advanced software packages but still the mathematical workflow (equations) has to be used and understood for the initial volume calculation process. In this paper a comparison is given between bulk volume calculations of geological structures using trapezoidal and Simpson's rule and the ones obtained from cell-based models. Comparison in calculation is illustrated with four models; dome - 1/2 of ball/sphere, elongated anticline, stratigraphic trap due to lateral facies change and faulted anticline trap. Results show that Simpson's and trapezoidal rules give a very accurate volume calculation even with a few inputs(isopach areas - ordinates). A test of cell based model volume calculation precision against grid resolution is presented for various cases. For high accuracy, less the 1% of an error from coarsening, a cell area has to be 0.0008% of the reservoir area

  12. Spill-point analysis and structural trapping capacity in saline aquifers using MRST-co2lab

    NASA Astrophysics Data System (ADS)

    Møll Nilsen, Halvor; Lie, Knut-Andreas; Møyner, Olav; Andersen, Odd

    2015-02-01

    Geological carbon storage represents a substantial challenge for the subsurface geosciences. Knowledge of the subsurface can be captured in a quantitative form using computational methods developed within petroleum production. However, to provide good estimates of the likely outcomes over thousands of years, traditional 3D simulation methods should be combined with other techniques developed specifically to study large-scale, long-term migration problems, e.g., in basin modeling. A number of such methods have been developed as a separate module in the open-source Matlab Reservoir Simulation Toolbox (MRST). In this paper, we present a set of tools provided by this module, consisting of geometrical and percolation type methods for computing structural traps and spill paths below a sealing caprock. Using concepts from water management, these tools can be applied on large-scale aquifer models to quickly estimate potential for structural trapping, determine spill paths from potential injection points, suggest optimal injection locations, etc. We demonstrate this by a series of examples applied on publicly available datasets. The corresponding source code is provided along with the examples.

  13. Study of the energy distribution of the interface trap density in a GeSn MOS structure by numerical simulation of the electrical characteristics

    NASA Astrophysics Data System (ADS)

    Baert, B.; Schmeits, M.; Nguyen, N. D.

    2014-02-01

    Using a custom-made numerical simulation tool, we performed a systematic study of the energy distribution of the interface trap density in a GeSn MOS structure and of their effect on the electrical characteristics such as C-V and impedance spectra. Interface traps with various densities of states and energies in the bandgap have been investigated and the application of the conductance method was assessed.

  14. Numerical simulation of quantum efficiency and surface recombination in HgCdTe IR photon-trapping structures

    NASA Astrophysics Data System (ADS)

    Schuster, Jonathan; Bellotti, Enrico

    2013-06-01

    We have investigated the quantum effiency in HgCdTe photovoltaic pixel arrays employing a photon-trapping structure realized with a periodic array of pillars intended to provide broadband operation. We have found that the quantum efficiency depends heavily on the passivation of the pillar surface. Pillars passivated with anodicoxide have a large fixed positive charge on the pillar surface. We use our three-dimensional numerical simulation model to study the effect of surface charge and surface recombination velocity on the exterior of the pillars. We then evaluate the quantum efficiency of this structure subject to different surface conditions. We have found that by themselves, the surface charge and surface recombination are detrimental to the quantum efficiency but the quantum efficiency is recovered when both phenomena are present. We will discuss the effects of these phenomena and the trade offs that exist between the two.

  15. Concentric Magnetic Structures for Magnetophoretic Bead Collection, Cell Trapping and Analysis of Cell Morphological Changes Caused by Local Magnetic Forces

    PubMed Central

    Huang, Chen-Yu; Wei, Zung-Hang

    2015-01-01

    Concentric magnetic structures (ring and square) with domain wall (DW) pinning geometry are designed for biological manipulation. Magnetic beads collection was firstly demonstrated to analyse the local magnetic field generated by DWs and the effective regions to capture magnetic targets of size 1 μm. Primary mouse embryonic fibroblasts (MEFs) are magnetically labeled by internalizing poly (styrene sulfonic acid) stabilized magnetic nanoparticles (PSS-MNPs) and then are selectively trapped by head-to-tail DWs (HH DWs) or tail-to-tail DWs (TT DWs) to be arranged into linear shape or cross shape. The morphologies and the nuclear geometry of the cells growing on two kinds of concentric magnetic structures are shown to be distinctive. The intracellular magnetic forces generated by the local magnetic field of DWs are found to influence the behaviour of cells. PMID:26270332

  16. Effective Light Trapping in Thin Film Silicon Solar Cells with Nano- and Microscale Structures on Glass Substrate.

    PubMed

    Bong, Sungjae; Ahn, Shihyun; Anh, Le Huy Tuan; Kim, Sunbo; Park, Hyeongsik; Shin, Chonghoon; Park, Jinjoo; Lee, Younjung; Yi, Junsin

    2016-05-01

    For thin film silicon-based solar cells, effective light trapping at a broad range of wavelengths (400-1100 nm) is necessary. Normally, etching is only carried out with TCOs, such as SnO2:F and impurity doped ZnO, to form nano-sized craters in the surface morphology to confer a light trapping effect. However, in this study, prior to ZnO:Al etching, periodic structures on the glass substrates were made by photolithography and wet etching to increase the light scattering and internal reflection. The use of periodic structures on the glass substrate resulted in higher haze ratios in the range from 550 nm to 1100 nm, which is the optical absorption wavelength region for thin film silicon solar cells, than obtained by simple ZnO:Al etching. The periodically textured glass with micro-sized structures compensates for the low haze ratio at the middle and long wavelengths of wet etched ZnO:Al. ZnO:Al was deposited on the periodically textured glass, after which the ZnO:Al surface was also etched randomly using a mixed acid solution to form nano-sized craters. The thin film silicon solar cells with 350-nm-thick amorphous silicon absorber layer deposited on the periodic structured glass and etched ZnO:Al generated up to 10.68% more photocurrent, with 11.2% increase of the conversion efficiency compared to the cell deposited on flat glass and etched ZnO:Al. PMID:27483855

  17. Charge Carriers in Planar and Meso-Structured Organic-Inorganic Perovskites: Mobilities, Lifetimes, and Concentrations of Trap States.

    PubMed

    Hutter, Eline M; Eperon, Giles E; Stranks, Samuel D; Savenije, Tom J

    2015-08-01

    Efficient solar cells have been obtained using thin films of solution-processed organic-inorganic perovskites. However, there remains limited knowledge about the relationship between preparation route and optoelectronic properties. We use complementary time-resolved microwave conductivity (TRMC) and photoluminescence (PL) measurements to investigate the charge carrier dynamics in thin planar films of CH3NH3PbI(3-x)Cl(x), CH3NH3PbI3, and their meso-structured analogues. High mobilities close to 30 cm(2)/(V s) and microsecond-long lifetimes are found in thin films of CH3NH3PbI(3-x)Cl(x), compared to lifetimes of only a few hundred nanoseconds in CH3NH3PbI3 and meso-structured perovskites. We describe our TRMC and PL experiments with a global kinetic model, using one set of kinetic parameters characteristic for each sample. We find that the trap density is less than 5 × 10(14) cm(-3) in CH3NH3PbI(3-x)Cl(x), 6 × 10(16) cm(-3) in the CH3NH3PbI3 thin film and ca. 10(15) cm(-3) in both meso-structured perovskites. Furthermore, our results imply that band-to-band recombination is enhanced by the presence of dark carriers resulting from unintentional doping of the perovskites. Finally, our general approach to determine concentrations of trap states and dark carriers is also highly relevant to other semiconductor materials. PMID:26267206

  18. Quantitative analysis of seismic fault zone waves in the rupture zone of the 1992 Landers, California, earthquake: Evidence for a shallow trapping structure

    USGS Publications Warehouse

    Peng, Z.; Ben-Zion, Y.; Michael, A.J.; Zhu, L.

    2003-01-01

    We analyse quantitatively a waveform data set of 238 earthquakes recorded by a dense seismic array across and along the rupture zone of the 1992 Landers earthquake. A grid-search method with station delay corrections is used to locate events that do not have catalogue locations. The quality of fault zone trapped waves generated by each event is determined from the ratios of seismic energy in time windows corresponding to trapped waves and direct S waves at stations close to and off the fault zone. Approximately 70 per cent of the events with S-P times of less than 2 s, including many clearly off the fault, produce considerable trapped wave energy. This distribution is in marked contrast with previous claims that trapped waves are generated only by sources close to or inside the Landers rupture zone. The time difference between the S arrival and trapped waves group does not grow systematically with increasing hypocentral distance and depth. The dispersion measured from the trapped waves is weak. These results imply that the seismic trapping structure at the Landers rupture zone is shallow and does not extend continuously along-strike by more than a few kilometres. Synthetic waveform modelling indicates that the fault zone waveguide has depth of approximately 2-4 km, a width of approximately 200 m, an S-wave velocity reduction relative to the host rock of approximately 30-40 per cent and an S-wave attenuation coefficient of approximately 20-30. The fault zone waveguide north of the array appears to be shallower and weaker than that south of the array. The waveform modelling also indicates that the seismic trapping structure below the array is centred approximately 100 m east of the surface break.

  19. Non-Axial Octupole Deformations and Tetrahedral Symmetry in Heavy Nuclei

    SciTech Connect

    Mazurek, Katarzyna; Dudek, Jerzy

    2005-11-21

    The total energies of about 120 nuclei in the Thorium region have been calculated within the macroscopic-microscopic method in the 5-dimensional space of deformation parameters {alpha}20, {alpha}22, {alpha}30, {alpha}32 and {alpha}40. The macroscopic energy term contains the nuclear surface-curvature dependence as proposed within the LSD approach. The microscopic energies are calculated with the Woods-Saxon single particle potential employing the universal set of parameters.We study a possible presence of the octupole axial and non-axial degrees of freedom all-over in the ({beta}, {gamma})-plane focussing on the ground-states, secondary minima and in the saddle points. In fact, a competition between axial and tri-axial octupole deformation parameters is obtained at the saddle points and in the secondary minima for many isotones with N > 136. The presence of the tetrahedral symmetry minima is predicted in numerous nuclei in the discussed region, although most of the time at relatively high excitation energies.

  20. Optical trapping

    PubMed Central

    Neuman, Keir C.; Block, Steven M.

    2006-01-01

    Since their invention just over 20 years ago, optical traps have emerged as a powerful tool with broad-reaching applications in biology and physics. Capabilities have evolved from simple manipulation to the application of calibrated forces on—and the measurement of nanometer-level displacements of—optically trapped objects. We review progress in the development of optical trapping apparatus, including instrument design considerations, position detection schemes and calibration techniques, with an emphasis on recent advances. We conclude with a brief summary of innovative optical trapping configurations and applications. PMID:16878180

  1. COLD TRAPS

    DOEpatents

    Thompson, W.I.

    1958-09-30

    A cold trap is presented for removing a condensable component from a gas mixture by cooling. It consists of a shell, the exterior surface of which is chilled by a refrigerant, and conductive fins welded inside the shell to condense the gas, and distribute the condensate evenly throughout the length of the trap, so that the trap may function until it becomes completely filled with the condensed solid. The contents may then be removed as either a gas or as a liquid by heating the trap. This device has particuinr use as a means for removing uranium hexafluoride from the gaseous diffusion separation process during equipment breakdown and repair periods.

  2. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase.

    PubMed

    Verba, Kliment A; Wang, Ray Yu-Ruei; Arakawa, Akihiko; Liu, Yanxin; Shirouzu, Mikako; Yokoyama, Shigeyuki; Agard, David A

    2016-06-24

    The Hsp90 molecular chaperone and its Cdc37 cochaperone help stabilize and activate more than half of the human kinome. However, both the mechanism by which these chaperones assist their "client" kinases and the reason why some kinases are addicted to Hsp90 while closely related family members are independent are unknown. Our structural understanding of these interactions is lacking, as no full-length structures of human Hsp90, Cdc37, or either of these proteins with a kinase have been elucidated. Here we report a 3.9 angstrom cryo-electron microscopy structure of the Hsp90-Cdc37-Cdk4 kinase complex. Surprisingly, the two lobes of Cdk4 are completely separated with the β4-β5 sheet unfolded. Cdc37 mimics part of the kinase N lobe, stabilizing an open kinase conformation by wedging itself between the two lobes. Finally, Hsp90 clamps around the unfolded kinase β5 strand and interacts with exposed N- and C-lobe interfaces, protecting the kinase in a trapped unfolded state. On the basis of this structure and an extensive amount of previously collected data, we propose unifying conceptual and mechanistic models of chaperone-kinase interactions. PMID:27339980

  3. A shallow fault-zone structure illuminated by trapped waves in the Karadere-Duzce branch of the North Anatolian Fault, western Turkey

    USGS Publications Warehouse

    Ben-Zion, Y.; Peng, Z.; Okaya, D.; Seeber, L.; Armbruster, J.G.; Ozer, N.; Michael, A.J.; Baris, S.; Aktar, M.

    2003-01-01

    We discuss the subsurface structure of the Karadere-Duzce branch of the North Anatolian Fault based on analysis of a large seismic data set recorded by a local PASSCAL network in the 6 months following the Mw = 7.4 1999 Izmit earthquake. Seismograms observed at stations located in the immediate vicinity of the rupture zone show motion amplification and long-period oscillations in both P- and S-wave trains that do not exist in nearby off-fault stations. Examination of thousands of waveforms reveals that these characteristics are commonly generated by events that are well outside the fault zone. The anomalous features in fault-zone seismograms produced by events not necessarily in the fault may be referred to generally as fault-zone-related site effects. The oscillatory shear wave trains after the direct S arrival in these seismograms are analysed as trapped waves propagating in a low-velocity fault-zone layer. The time difference between the S arrival and trapped waves group does not grow systematically with increasing source-receiver separation along the fault. These observations imply that the trapping of seismic energy in the Karadere-Duzce rupture zone is generated by a shallow fault-zone layer. Traveltime analysis and synthetic waveform modelling indicate that the depth of the trapping structure is approximately 3-4 km. The synthetic waveform modelling indicates further that the shallow trapping structure has effective waveguide properties consisting of thickness of the order of 100 m, a velocity decrease relative to the surrounding rock of approximately 50 per cent and an S-wave quality factor of 10-15. The results are supported by large 2-D and 3-D parameter space studies and are compatible with recent analyses of trapped waves in a number of other faults and rupture zones. The inferred shallow trapping structure is likely to be a common structural element of fault zones and may correspond to the top part of a flower-type structure. The motion amplification

  4. Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination

    PubMed Central

    Wlodawer, Alexander; Minor, Wladek; Dauter, Zbigniew; Jaskolski, Mariusz

    2014-01-01

    The number of macromolecular structures deposited in the Protein Data Bank now approaches 100 000, with the vast majority of them determined by crystallographic methods. Thousands of papers describing such structures have been published in the scientific literature, and 20 Nobel Prizes in chemistry or medicine have been awarded for discoveries based on macromolecular crystallography. New hardware and software tools have made crystallography appear to be an almost routine (but still far from being analytical) technique and many structures are now being determined by scientists with very limited experience in the practical aspects of the field. However, this apparent ease is sometimes illusory and proper procedures need to be followed to maintain high standards of structure quality. In addition, many noncrystallographers may have problems with the critical evaluation and interpretation of structural results published in the scientific literature. The present review provides an outline of the technical aspects of crystallography for less experienced practitioners, as well as information that might be useful for users of macromolecular structures, aiming to show them how to interpret (but not overinterpret) the information present in the coordinate files and in their description. A discussion of the extent of information that can be gleaned from the atomic coordinates of structures solved at different resolution is provided, as well as problems and pitfalls encountered in structure determination and interpretation. PMID:24034303

  5. Optical Trapping of Nanoparticles

    PubMed Central

    Bergeron, Jarrah; Zehtabi-Oskuie, Ana; Ghaffari, Saeedeh; Pang, Yuanjie; Gordon, Reuven

    2013-01-01

    Optical trapping is a technique for immobilizing and manipulating small objects in a gentle way using light, and it has been widely applied in trapping and manipulating small biological particles. Ashkin and co-workers first demonstrated optical tweezers using a single focused beam1. The single beam trap can be described accurately using the perturbative gradient force formulation in the case of small Rayleigh regime particles1. In the perturbative regime, the optical power required for trapping a particle scales as the inverse fourth power of the particle size. High optical powers can damage dielectric particles and cause heating. For instance, trapped latex spheres of 109 nm in diameter were destroyed by a 15 mW beam in 25 sec1, which has serious implications for biological matter2,3. A self-induced back-action (SIBA) optical trapping was proposed to trap 50 nm polystyrene spheres in the non-perturbative regime4. In a non-perturbative regime, even a small particle with little permittivity contrast to the background can influence significantly the ambient electromagnetic field and induce a large optical force. As a particle enters an illuminated aperture, light transmission increases dramatically because of dielectric loading. If the particle attempts to leave the aperture, decreased transmission causes a change in momentum outwards from the hole and, by Newton's Third Law, results in a force on the particle inwards into the hole, trapping the particle. The light transmission can be monitored; hence, the trap can become a sensor. The SIBA trapping technique can be further improved by using a double-nanohole structure. The double-nanohole structure has been shown to give a strong local field enhancement5,6. Between the two sharp tips of the double-nanohole, a small particle can cause a large change in optical transmission, thereby inducing a large optical force. As a result, smaller nanoparticles can be trapped, such as 12 nm silicate spheres7 and 3.4 nm

  6. Optical trapping of nanoparticles.

    PubMed

    Bergeron, Jarrah; Zehtabi-Oskuie, Ana; Ghaffari, Saeedeh; Pang, Yuanjie; Gordon, Reuven

    2013-01-01

    Optical trapping is a technique for immobilizing and manipulating small objects in a gentle way using light, and it has been widely applied in trapping and manipulating small biological particles. Ashkin and co-workers first demonstrated optical tweezers using a single focused beam. The single beam trap can be described accurately using the perturbative gradient force formulation in the case of small Rayleigh regime particles. In the perturbative regime, the optical power required for trapping a particle scales as the inverse fourth power of the particle size. High optical powers can damage dielectric particles and cause heating. For instance, trapped latex spheres of 109 nm in diameter were destroyed by a 15 mW beam in 25 sec, which has serious implications for biological matter. A self-induced back-action (SIBA) optical trapping was proposed to trap 50 nm polystyrene spheres in the non-perturbative regime. In a non-perturbative regime, even a small particle with little permittivity contrast to the background can influence significantly the ambient electromagnetic field and induce a large optical force. As a particle enters an illuminated aperture, light transmission increases dramatically because of dielectric loading. If the particle attempts to leave the aperture, decreased transmission causes a change in momentum outwards from the hole and, by Newton's Third Law, results in a force on the particle inwards into the hole, trapping the particle. The light transmission can be monitored; hence, the trap can become a sensor. The SIBA trapping technique can be further improved by using a double-nanohole structure. The double-nanohole structure has been shown to give a strong local field enhancement. Between the two sharp tips of the double-nanohole, a small particle can cause a large change in optical transmission, thereby inducing a large optical force. As a result, smaller nanoparticles can be trapped, such as 12 nm silicate spheres and 3.4 nm hydrodynamic radius

  7. Lenticular stretch structures in eastern Nevada - possible trapping mechanism in supposed graben

    SciTech Connect

    Walker, C.T.; Dennis, J.G.; Lumsden, W.W.

    1986-04-01

    Eastern Nevada is widely recognized as a region of tectonic extension. The dominant structures are generally agreed to be low-dipping, younger over older faults and steeper listric faults that are responsible for the basins (grabens) and ranges (horsts). In the Schell Creek-Duck Creek Range, east of Ely, and in the White Pine Range, southwest of Ely, small lenticular structures bounded by tectonic discontinuities can be clearly seen in the field. These lenticular units, or stretch structures, range in length from a few meters to more than 200 m. All lenticular stretch structures that can be clearly seen in the field are stratigraphically restricted; the stretched formations are the Eureka Quartzite, the Pilot Shale, the Joana Limestone, and the Chainman Shale. Still larger stretch structures, which may include several formations, are inferred, and the authors suggest that extension has created lenticular structures at all scales. The Duck Creek and Schell Creek Ranges east of Ely consist mostly of Devonian and older rocks. They are separated by a topographically lower area containing mostly Mississippian and Pennsylvanian rocks. This structure, which separates the ranges, has been referred to as a graben, but field evidence suggests that it is a large-scale lenticular stretch structure. Unlike a true graben, the structure does not extend downward. For example, in several places within the supposed graben, Cambrian and Ordovician rocks project through a cover of Carboniferous Chainman Shale and Ely Limestone, suggesting the Chainman-Ely is a thin sheet underlain by Cambrian-Ordovician rocks. Accordingly, they suggest that extension in the Duck Creek-Schell Creek Ranges stretched the formations into lenticular bodies. Between the Duck Creek and Schell Creek Ranges, the Cambrian-Ordovician is attenuated, and the resulting tectonic depression is occupied by a lenticular mass of Carboniferous rocks.

  8. Enhanced photo-sensitivity through an increased light-trapping on Si by surface nano-structuring using MWCNT etch mask

    PubMed Central

    2011-01-01

    We demonstrate an enhanced photo-sensitivity (PS) through an increased light-trapping using surface nano-structuring technique by inductively coupled plasma (ICP) etching on multi-walled carbon nanotube (MWCNT) etch masked Si with hexamethyl-disilazane (HMDS) dispersion. In order for a systematic comparison, four samples are prepared, respectively, by conventional photolithography and ICP etching using MWCNT as a etch mask. MWCNT-etched Si with HMDS dispersion shows the highest RMS roughness and the lowest reflectance of the four. Two test device structures are fabricated with active regions of bare-Si as a reference and MWCNT etch masked Si with HMDS dispersion. The increased light-trapping was most significant at mid-UV, somewhat less at visible and less noticeable at infrared. With an ICP-etched Si using CNT HMDS dispersion, PS is very sharply increased. This result can lead to applications in optoelectronics where the enhancement in light-trapping is important. PMID:22040026

  9. Oxygen trapped by rare earth tetrahedral clusters in Nd{sub 4}FeOS{sub 6}: Crystal structure, electronic structure, and magnetic properties

    SciTech Connect

    Lin, Qisheng; Taufour, Valentin; Zhang, Yuemei; Wood, Max; Drtina, Thomas; Bud’ko, Sergey L.; Canfield, Paul C.; Miller, Gordon J.

    2015-09-15

    Single crystals of Nd{sub 4}FeOS{sub 6} were grown from an Fe–S eutectic solution. Single crystal X-ray diffraction analysis revealed a Nd{sub 4}MnOSe{sub 6}-type structure (P6{sub 3}mc, a=9.2693(1) Å, c=6.6650(1)Å, V=495.94(1) Å{sup 3}, Z=2), featuring parallel chains of face-sharing [FeS{sub 6×1/2}]{sup 4−} trigonal antiprisms and interlinked [Nd{sub 4}OS{sub 3}]{sup 4+} cubane-like clusters. Oxygen atoms were found to be trapped by Nd{sub 4} clusters in the [Nd{sub 4}OS{sub 3}]{sup 4{sub +}} chains. Structural differences among Nd{sub 4}MnOSe{sub 6}-type Nd{sub 4}FeOS{sub 6} and the related La{sub 3}CuSiS{sub 7}− and Pr{sub 8}CoGa{sub 3}-type structures have been described. Magnetic susceptibility measurements on Nd{sub 4}FeOS{sub 6} suggested the dominance of antiferromagnetic interactions at low temperature, but no magnetic ordering down to 2 K was observed. Spin-polarized electronic structure calculations revealed magnetic frustration with dominant antiferromagnetic interactions. - Graphical abstract: Trapping of oxygen in Nd{sub 4} tetrahedral clusters results in the formation of the Nd{sub 4}MnOSe{sub 6}-type Nd{sub 4}FeOS{sub 6}, in contrast to the La{sub 3}CuSiS{sub 7}-type oxygen-free Nd{sub 4}FeS{sub 7} and related Pr{sub 8}CoGa{sub 3}-type structures. Complex magnetic frustration inhibits magnetic ordering at low temperature. - Highlights: • Single crystals of Nd{sub 4}FeOS{sub 6} were grown using self-flux method. • Oxygen was found trapped by Nd{sub 4} tetrahedral clusters. • Comparison with two closely related structural types were discussed. • Magnetic measurements revealed antiferromagnetic (AFM) interaction. • VASP calculations confirmed strong magnetic frustration in AFM model.

  10. One-phonon octupole vibrational states in 211At, 212Rn, 213Fr and 214Ra with N = 126

    NASA Astrophysics Data System (ADS)

    Hwang, J. K.; Hamilton, J. H.; Ramayya, A. V.

    2013-12-01

    Excited high spin states in 211At, 212Rn, 213Fr and 214Ra with N = 126 are reorganized and interpreted in terms of the stretched weak coupling of an octupole 3- phonon. Nearly identical sequences of levels with ΔI = 3 and the parity change are found, for the first time, up to 25- for 20 states of 214Ra, up to 35- for 36 states of 212Rn and up to 53/2+ for 16 states of 213Fr. The stretched weak coupling of an octupole phonon is extended up to the highest excitation energy of 11355 keV for 212Rn which has the largest experimental B( E3) value of 44.1(88) W.u. for the 11- → 8{2/+} transition. The stretched weak coupling of an octupole 3- phonon needs to be considered when single particle configurations are assigned to high spin states. Average octupole excitation energies of 657(51) keV for 211At, 1101(28) keV for 212Rn, 667(25) keV for 213Fr, and 709(25) keV for 214Ra are obtained. The calculated level enegies are in a good agreement with the experimental level energies within the error limit of 4.3%.

  11. Stratigraphic traps 2

    SciTech Connect

    Not Available

    1991-01-01

    This volume contains studies of fields with traps that are mainly stratigraphic in nature. Structure plays a role in the traps of several fields, but overall, it is clear that the main trapping features with the group of fields in this volume are stratigraphic. The first six fields in this volume, Alabama Ferry, Rospo Mare, Walker Creek, Bindley, Lexington, and Newburg/South Westhope, have carbonate reservoirs. The latter two of these, Lexington and Newburg/South Westhope, also have sandstone reservoirs. The remaining fields, East Texas, East Clinton, Stockholm Southwest, Sorrento, Port Acres, and Lagoa Parda, have only sandstone reservoirs.

  12. Structural style and hydrocarbon trap of Karbasi anticline, in the Interior Fars region, Zagros, Iran

    NASA Astrophysics Data System (ADS)

    Maleki, Z.; Arian, M.; Solgi, A.

    2014-07-01

    Karbasi anticline between west-northwest parts of Jahrom town is located in northwest 40 km distance of Aghar gas anticline in interior Fars region. This anticline has asymmetric structure and some faults with large strike separation observed in its structure. The operation of Nezamabad sinistral strike slip fault in west part of this anticline caused fault plunge change in this region. Because of complication increasing of structures geometry in Fars region and necessity to exploration activities for deeper horizons especially the Paleozoic ones, the analysis of fold style elements, which is known as one of the main parts in structural studies seems necessary. In this paper because of some reasons such as Karbasi anticline structural complication, importance of drilling and hydrocarbon explorations in Fars region, it is proceed to analysis and evaluation of fold style elements and geometry with emphasis on Nezamabad fault operation in Interior Fars region. According to fold style elements analysis results, it became clear that in east part of anticline the type of fold horizontal moderately inclined and in west part it is upright moderately plunging, so west evaluation of anticline is affected by more deformation. In this research the relationship present faults especially the Nezamabad sinistral strike slip one with folding and its affection on Dehram horizon and Bangestan group were modeled. Based on received results may be the Nezamabad fault is located between G-G' and E-E' structural sections and this fault in this area operated same as fault zone. In different parts of Karbasi anticline, Dashtak formation as a middle detachment unit plays an important role in connection to folding geometry, may be which is affected by Nezamabad main fault.

  13. Novel light trapping concepts for crystalline silicon solar cells using diffractive rear side structures

    NASA Astrophysics Data System (ADS)

    Eisenlohr, J.; Tucher, N.; Bett, Alexander; Hauser, H.; Graf, M.; Benick, J.; Goldschmidt, J. C.; Bläsi, B.; Hermle, M.

    2014-05-01

    Crystalline silicon solar cells absorb light in the near infrared only weakly. To utilize also the infrared light of the solar spectrum with energies still greater than the band gap of silicon, the effective path of the light inside the solar cell has to be enhanced. Light paths can be manipulated at the front side as well as at the rear side of a solar cell. For the front side, pyramidal textures that also show anti-reflection properties are widely used. These anti-reflection properties, however, can also be achieved with planar dielectric coatings or nanostructured surfaces. In this case, the path length enhancement can be achieved with rear side structures that are especially optimized for this purpose, thus de-coupling anti-reflection and path-length enhancement functionalities. This de-coupling creates leeway to optimize not only the optical properties but also the electrical properties of the optically active structures, and to realize structures that are compatible with very thin silicon wafers. To this end, this paper investigates two kinds of diffractive rear side structures, both, theoretically and experimentally. First, hexagonal sphere gratings that are produced by a self-organized growth process using spin coating, and second, binary gratings produced via nano-imprint lithography. Both process chains are potentially scalable to large areas. In optical measurements we determined potential photocurrent density gains of over 1 mA/cm2 for 250 μm thick wafers for both structures. Furthermore, we developed a process for contact formation as one key step to fully processed solar cells with diffractive rear side structures.

  14. Structural phases of trapped colloids with competing interactions in two and three dimensions

    NASA Astrophysics Data System (ADS)

    da Silva Apolinário, Sérgio Wlademir; de Queiroz da Costa Campos, Lucas; Oliveira Lima, Everton; Löwen, Hartmut

    2014-03-01

    By employing Brownian dynamics simulation we analyzed the spatial configurations resulting from a self-assembly process of colloidal particles interacting via a competive isotropic pair potential both in two and three dimensions. A wide variety of different spacial configurations is found to be stable which includes, for two dimensions, clusters with a fringed outer rim (reminiscent to an ornamental border), clusters perforated with voids as well as clusters with a crystalline core and a disordered rim, and, for three dimensions, clusters perforated with channels and helical fringes. All cluster structures occur in a two-dimensional parameter space. The structural ordering can therefore be efficiently tuned by changing few parameters only providing access to a controlled fabrication of colloidal clusters. FACEPE and CNPq

  15. Structure of fully liganded Hb ζ2β2 s trapped in a tense conformation

    PubMed Central

    Safo, Martin K.; Ko, Tzu-Ping; Abdulmalik, Osheiza; He, Zhenning; Wang, Andrew H.-J.; Schreiter, Eric R.; Russell, J. Eric

    2013-01-01

    A variant Hb ζ2β2 s that is formed from sickle hemoglobin (Hb S; α2β2 s) by exchanging adult α-globin with embryonic ζ-globin subunits shows promise as a therapeutic agent for sickle-cell disease (SCD). Hb ζ2β2 s inhibits the polymerization of deoxy­genated Hb S in vitro and reverses characteristic features of SCD in vivo in mouse models of the disorder. When compared with either Hb S or with normal human adult Hb A (α2β2), Hb ζ2β2 s exhibits atypical properties that include a high oxygen affinity, reduced cooperativity, a weak Bohr effect and blunted 2,3-­diphosphoglycerate allostery. Here, the 1.95 Å resolution crystal structure of human Hb ζ2β2 s that was expressed in complex transgenic knockout mice and purified from their erythrocytes is presented. When fully liganded with carbon monoxide, Hb ζ2β2 s displays a central water cavity, a ζ1–βs2 (or ζ2–βs1) interface, intersubunit salt-bridge/hydrogen-bond interactions, C-terminal βHis146 salt-bridge interactions, and a β-cleft, that are highly unusual for a relaxed hemoglobin structure and are more typical of a tense conformation. These quaternary tense-like features contrast with the tertiary relaxed-like conformations of the ζ1βs1 dimer and the CD and FG corners, as well as the overall structures of the heme cavities. This crystallographic study provides insights into the altered oxygen-transport properties of Hb ζ2β2 s and, moreover, decouples tertiary- and quaternary-structural events that are critical to Hb ligand binding and allosteric function. PMID:24100324

  16. Carrier trapping and escape times in p-i-n GaInNAs MQW structures

    PubMed Central

    2014-01-01

    We used a semi-classical model to describe carrier capture into and thermionic escape from GaInNAs/GaAs multiple quantum wells (MQWs) situated within the intrinsic region of a GaAs p-i-n junction. The results are used to explain photocurrent oscillations with applied bias observed in these structures, in terms of charge accumulation and resonance tunnelling. PMID:24417767

  17. Structural style variation and its impact on hydrocarbon traps in central Fars, southern Zagros folded belt, Iran

    NASA Astrophysics Data System (ADS)

    Motamedi, Hossein; Sherkati, Shahram; Sepehr, Mohammad

    2012-04-01

    The Fars area is the main target for Permian gas exploration in the Zagros fold belt. It contains approximately 15 percent of the world's proven gas reserves. The geometrical characteristics of the folded structures change dramatically across the N-S trending Gavbandi High. We used seismic profiles, well data, magnetic survey information and field observations to show that thickness variation of the sedimentary pile inherited from basement geometry is the main reason behind structural style variation in this area which occurred during the Zagros folding. Differences in thickness were more significant in Early-Middle Paleozoic time and decreased considerably upward in time. The total thickness of the Lower Paleozoic succession in the eastern side of the Gavbandi High is approximately 40-50% thicker than on the summit of this basement high. Sedimentary pinch-outs through Cretaceous and Tertiary times indicate that the activity of the basement faults decreased but did not stop. The impact on hydrocarbon traps of the pre-folding basin architecture and the differences in the behavior of the sedimentary cover after Miocene folding is discussed and documented.

  18. XAS study of mercury(II) ions trapped in mercaptan-functionalized mesostructured silicate with a wormhole framework structure.

    PubMed

    Chen, Chia-Chen; McKimmy, Emily J; Pinnavaia, Thomas J; Hayes, Kim F

    2004-09-15

    Directly assembled wormhole mesostructures with high level functionalized mercaptan (MP-HMS) have been shown to be effective mercury(II) (Hg2+) trapping agents. Sorption of Hg2+ onto MP-HMS was investigated using X-ray absorption spectroscopy (XAS) to identify the structural coordination of the adsorbed Hg. Samples with different fractions of mercaptan functionalized groups (i.e., x = 0.1 and 0.5) with various Hg/S molar ratios ranging from 0.05 to 1.4 were investigated. XAS analysis indicates that adsorbed Hg first coordination shell is best fitted with an Hg-O path and an Hg-S path. The Hg-S atomic distance (R(Hg-S)) remained relatively constant while the Hg-S coordination numbers (CN) decreased as Hg/S loading increased. For the Hg-O path, both the CN and the R(Hg-O) increased with increasing Hg loading. XAS results suggest that at low Hg loadings, adsorbed Hg2+ forms mostly monodentate sulfur complexes (-S-Hg-OH) with the sulfur functional groups on the MP-HMS surfaces. At high Hg loadings, the Hg coordination environment is consistent with the formation of a double-layer structure of Hg attached to sulfur binding sites (-S-Hg-O-Hg-OH). PMID:15487784

  19. New Aspects on the Structure of Neutrophil Extracellular Traps from Chronic Obstructive Pulmonary Disease and In Vitro Generation

    PubMed Central

    Krautgartner, Wolf-Dietrich; Klappacher, Michaela; Kofler, Barbara; Steinbacher, Peter; Vitkov, Ljubomir; Grabcanovic-Musija, Fikreta; Studnicka, Michael

    2014-01-01

    Polymorphonuclear neutrophils have in recent years attracted new attention due to their ability to release neutrophil extracellular traps (NETs). These web-like extracellular structures deriving from nuclear chromatin have been depicted in ambiguous roles between antimicrobial defence and host tissue damage. NETs consist of DNA strands of varying thickness and are decorated with microbicidal and cytotoxic proteins. Their principal structure has in recent years been characterised at molecular and ultrastructural levels but many features that are of direct relevance to cytotoxicity are still incompletely understood. These include the extent of chromatin decondensation during NET formation and the relative amounts and spatial distribution of the microbicidal components within the NET. In the present work, we analyse the structure of NETs found in induced sputum of patients with acutely exacerbated chronic obstructive pulmonary disease (COPD) using confocal laser microscopy and electron microscopy. In vitro induced NETs from human neutrophils serve for purposes of comparison and extended analysis of NET structure. Results demonstrate that COPD sputa are characterised by the pronounced presence of NETs and NETotic neutrophils. We provide new evidence that chromatin decondensation during NETosis is most extensive and generates substantial amounts of double-helix DNA in ‘beads-on-a-string’ conformation. New information is also presented on the abundance and location of neutrophil elastase (NE) and citrullinated histone H3 (citH3). NE occurs in high densities in nearly all non-fibrous constituents of the NETs while citH3 is much less abundant. We conclude from the results that (i) NETosis is an integral part of COPD pathology; this is relevant to all future research on the etiology and therapy of the disease; and that (ii) release of ‘beads-on-a-string’ DNA studded with non-citrullinated histones is a common feature of in vivo NETosis; this is of relevance to both

  20. Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions.

    PubMed

    Bhardwaj, Anshul; Sankhala, Rajeshwer S; Olia, Adam S; Brooke, Dewey; Casjens, Sherwood R; Taylor, Derek J; Prevelige, Peter E; Cingolani, Gino

    2016-01-01

    Bacterial viruses of the P22-like family encode a specialized tail needle essential for genome stabilization after DNA packaging and implicated in Gram-negative cell envelope penetration. The atomic structure of P22 tail needle (gp26) crystallized at acidic pH reveals a slender fiber containing an N-terminal "trimer of hairpins" tip. Although the length and composition of tail needles vary significantly in Podoviridae, unexpectedly, the amino acid sequence of the N-terminal tip is exceptionally conserved in more than 200 genomes of P22-like phages and prophages. In this paper, we used x-ray crystallography and EM to investigate the neutral pH structure of three tail needles from bacteriophage P22, HK620, and Sf6. In all cases, we found that the N-terminal tip is poorly structured, in stark contrast to the compact trimer of hairpins seen in gp26 crystallized at acidic pH. Hydrogen-deuterium exchange mass spectrometry, limited proteolysis, circular dichroism spectroscopy, and gel filtration chromatography revealed that the N-terminal tip is highly dynamic in solution and unlikely to adopt a stable trimeric conformation at physiological pH. This is supported by the cryo-EM reconstruction of P22 mature virion tail, where the density of gp26 N-terminal tip is incompatible with a trimer of hairpins. We propose the tail needle N-terminal tip exists in two conformations: a pre-ejection extended conformation, which seals the portal vertex after genome packaging, and a postejection trimer of hairpins, which forms upon its release from the virion. The conformational plasticity of the tail needle N-terminal tip is built in the amino acid sequence, explaining its extraordinary conservation in nature. PMID:26574546

  1. Evolution of the hourglass structures in the Laminaria High, Timor Sea: Implications for hydrocarbon traps

    NASA Astrophysics Data System (ADS)

    Çiftçi, N. Bozkurt; Langhi, Laurent

    2012-03-01

    In cross-section, an hourglass structure can be visualized as an older horst block and superimposed, younger graben. Bounding faults of the horst and graben blocks represent separate conjugate fault systems formed by two distinct episodes of extension in the Timor Sea during Late Jurassic-Early Cretaceous (1st-phase) and Middle Miocene - Pliocene (2nd-phase); with an ∼120 My hiatus of limited or no fault activity in-between. Horst blocks were formed by the 1st-phase of extension and buried post-deformation. With the onset of the 2nd-phase of extension, the hourglass geometry began to form by nucleation of the graben-bounding faults in the shallow sedimentary section, in isolation from the horst-bounding faults. Location of the graben is biased by the buried horst block and graben-bounding faults grew down-dip from the shallow locus of nucleation toward the underlying horst block on which only minor reactivation occurred. Detachment of the two systems in this way was predominantly controlled by the first-order mechanical layering. A thick, shale-rich, ductile layer separates the horst- and graben-bounding fault systems and acts as a barrier to vertical fault propagation. Confinement of the graben-bounding faults into the shallow section was also facilitated by outer-arc style extension due to lithospheric flexure controlling the 2nd-phase strain in the region. The complex evolution history and the composite nature of the hourglass structures resulted in systematic along-dip variation of displacement. This variation predominantly relates to syn-kinematic deposition and location of fault tips that are controlled by the ductile layer. The presented evolution model of the hourglass structures concentrates fault tips and related stress perturbation onto the top seal and is likely to be detrimental to top-seal integrity.

  2. Structural changes in isometrically contracting insect flight muscle trapped following a mechanical perturbation.

    PubMed

    Wu, Shenping; Liu, Jun; Reedy, Mary C; Perz-Edwards, Robert J; Tregear, Richard T; Winkler, Hanspeter; Franzini-Armstrong, Clara; Sasaki, Hiroyuki; Lucaveche, Carmen; Goldman, Yale E; Reedy, Michael K; Taylor, Kenneth A

    2012-01-01

    The application of rapidly applied length steps to actively contracting muscle is a classic method for synchronizing the response of myosin cross-bridges so that the average response of the ensemble can be measured. Alternatively, electron tomography (ET) is a technique that can report the structure of the individual members of the ensemble. We probed the structure of active myosin motors (cross-bridges) by applying 0.5% changes in length (either a stretch or a release) within 2 ms to isometrically contracting insect flight muscle (IFM) fibers followed after 5-6 ms by rapid freezing against a liquid helium cooled copper mirror. ET of freeze-substituted fibers, embedded and thin-sectioned, provides 3-D cross-bridge images, sorted by multivariate data analysis into ~40 classes, distinct in average structure, population size and lattice distribution. Individual actin subunits are resolved facilitating quasi-atomic modeling of each class average to determine its binding strength (weak or strong) to actin. ~98% of strong-binding acto-myosin attachments present after a length perturbation are confined to "target zones" of only two actin subunits located exactly midway between successive troponin complexes along each long-pitch helical repeat of actin. Significant changes in the types, distribution and structure of actin-myosin attachments occurred in a manner consistent with the mechanical transients. Most dramatic is near disappearance, after either length perturbation, of a class of weak-binding cross-bridges, attached within the target zone, that are highly likely to be precursors of strong-binding cross-bridges. These weak-binding cross-bridges were originally observed in isometrically contracting IFM. Their disappearance following a quick stretch or release can be explained by a recent kinetic model for muscle contraction, as behaviour consistent with their identification as precursors of strong-binding cross-bridges. The results provide a detailed model for

  3. Structural Changes in Isometrically Contracting Insect Flight Muscle Trapped following a Mechanical Perturbation

    PubMed Central

    Wu, Shenping; Liu, Jun; Perz-Edwards, Robert J.; Tregear, Richard T.; Winkler, Hanspeter; Franzini-Armstrong, Clara; Sasaki, Hiroyuki; Goldman, Yale E.; Reedy, Michael K.; Taylor, Kenneth A.

    2012-01-01

    The application of rapidly applied length steps to actively contracting muscle is a classic method for synchronizing the response of myosin cross-bridges so that the average response of the ensemble can be measured. Alternatively, electron tomography (ET) is a technique that can report the structure of the individual members of the ensemble. We probed the structure of active myosin motors (cross-bridges) by applying 0.5% changes in length (either a stretch or a release) within 2 ms to isometrically contracting insect flight muscle (IFM) fibers followed after 5–6 ms by rapid freezing against a liquid helium cooled copper mirror. ET of freeze-substituted fibers, embedded and thin-sectioned, provides 3-D cross-bridge images, sorted by multivariate data analysis into ∼40 classes, distinct in average structure, population size and lattice distribution. Individual actin subunits are resolved facilitating quasi-atomic modeling of each class average to determine its binding strength (weak or strong) to actin. ∼98% of strong-binding acto-myosin attachments present after a length perturbation are confined to “target zones” of only two actin subunits located exactly midway between successive troponin complexes along each long-pitch helical repeat of actin. Significant changes in the types, distribution and structure of actin-myosin attachments occurred in a manner consistent with the mechanical transients. Most dramatic is near disappearance, after either length perturbation, of a class of weak-binding cross-bridges, attached within the target zone, that are highly likely to be precursors of strong-binding cross-bridges. These weak-binding cross-bridges were originally observed in isometrically contracting IFM. Their disappearance following a quick stretch or release can be explained by a recent kinetic model for muscle contraction, as behaviour consistent with their identification as precursors of strong-binding cross-bridges. The results provide a detailed model

  4. Test of the transport properties of a helical electrostatic quadrupole and quasi-octupole

    SciTech Connect

    Xiu, L.; Ohnuma, Shoroku; Wang, K. . Dept. of Physics); Meitzler, C.R.; Xu, Y. . Dept. of Physics)

    1993-01-01

    A third-generation continuous helical electrostatic quadrupole (HESQ) lens has been built and tested. The new HESQ is 21.5 cm long and has a 3.6 cm diameter aperture. The HESQ has been tested under two separate conditions: with a pulsed 25 keV, 0.5 mA proton beam; and a 25 keV, 10 mA proton beam. The input emittance was fixed using a multi-aperture collimator. A comparison is made between experiment and numerical simulations for a wide variety of operating conditions. A second possible operating mode is the quasi-octupole mode, which offers significantly reduced aberration when compared to the quadrupole mode. The results of preliminary tests in this operating mode will be presented.

  5. Test of the transport properties of a helical electrostatic quadrupole and quasi-octupole

    SciTech Connect

    Xiu, L.; Ohnuma, Shoroku; Wang, K.; Meitzler, C.R.; Xu, Y.

    1993-06-01

    A third-generation continuous helical electrostatic quadrupole (HESQ) lens has been built and tested. The new HESQ is 21.5 cm long and has a 3.6 cm diameter aperture. The HESQ has been tested under two separate conditions: with a pulsed 25 keV, 0.5 mA proton beam; and a 25 keV, 10 mA proton beam. The input emittance was fixed using a multi-aperture collimator. A comparison is made between experiment and numerical simulations for a wide variety of operating conditions. A second possible operating mode is the quasi-octupole mode, which offers significantly reduced aberration when compared to the quadrupole mode. The results of preliminary tests in this operating mode will be presented.

  6. Rotation induced octupole correlations in the neutron-deficient 109Te nucleus

    NASA Astrophysics Data System (ADS)

    de Angelis, G.; Fahlander, C.; Gadea, A.; Farnea, E.; Bazzacco, D.; Belcari, N.; Blasi, N.; Bizzeti, P. G.; Bizzeti-Sona, A.; de Acuña, D.; de Poli, M.; Grawe, H.; Johnson, A.; Lo Bianco, G.; Lunardi, S.; Napoli, D. R.; Nyberg, J.; Pavan, P.; Persson, J.; Rossi Alvarez, C.; Rudolph, D.; Schubart, R.; Spolaore, P.; Wyss, R.; Xu, F.

    1998-10-01

    High spin states in the neutron deficient nucleus 109Te have been populated with the 58Ni+54Fe reaction at 220 MeV and investigated through γ-spectroscopy methods at the GASP spectrometer making use of reaction channel selection with the ISIS Si-ball. The level scheme has been extended up to an excitation energy of ~12.1 MeV. The spins and parities of the observed levels are assigned tentatively supporting the identification of two bands of opposite parity connected by strong dipole transitions inferred to be of E1 character. Octupole correlations in 109Te induced by rotation are suggested as the cause of this effect.

  7. Octupole Magnet For Soft X Ray Magnetic Dichroism Experiments: Design and Performance

    SciTech Connect

    Arenholz, Elke; Prestemon, Soren O.

    2004-05-12

    An octupole magnet endstation for soft x ray magnetic dichroism measurements has been developed at the Advanced Light Source. The system consists of an eight pole electromagnet that surrounds a small vacuum chamber. The magnet provides fields up to 0.9 T that can be applied in any direction relative to the incoming x ray beam. High precision magnetic circular and linear dichroism spectra can be obtained reversing the magnetic field for each photon energy in an energy scan. Moreover, the field dependence of all components of the magnetization vector can be studied in detail by choosing various angles of x ray incidence while keeping the relative orientation of magnetic field and sample fixed.

  8. Octupole magnet for soft X ray magnetic dichroism experiments: Design and performance

    SciTech Connect

    Arenholz, Elke; Prestemon, Soren O.

    2003-08-24

    An octupole magnet endstation for soft x-ray magnetic dichroism measurements has been developed at the Advanced Light Source. The system consists of an eight pole electromagnet that surrounds a small vacuum chamber. The magnet provides fields up to 0.9 T that can be applied in any direction relative to the incoming x-ray beam. High precision magnetic circular and linear dichroism spectra can be obtained reversing the magnetic field for each photon energy in an energy scan. Moreover, the field dependence of all components of the magnetization vector can be studied in detail by choosing various angles of x-ray incidence while keeping the relative orientation of magnetic field and sample fixed.

  9. Structural characterization of toxic oligomers that are kinetically trapped during α-synuclein fibril formation

    PubMed Central

    Chen, Serene W.; Drakulic, Srdja; Deas, Emma; Ouberai, Myriam; Aprile, Francesco A.; Arranz, Rocío; Ness, Samuel; Roodveldt, Cintia; Guilliams, Tim; De-Genst, Erwin J.; Klenerman, David; Wood, Nicholas W.; Knowles, Tuomas P.J.; Alfonso, Carlos; Rivas, Germán; Abramov, Andrey Y.; Valpuesta, José María; Dobson, Christopher M.; Cremades, Nunilo

    2015-01-01

    We describe the isolation and detailed structural characterization of stable toxic oligomers of α-synuclein that have accumulated during the process of amyloid formation. Our approach has allowed us to identify distinct subgroups of oligomers and to probe their molecular architectures by using cryo-electron microscopy (cryoEM) image reconstruction techniques. Although the oligomers exist in a range of sizes, with different extents and nature of β-sheet content and exposed hydrophobicity, they all possess a hollow cylindrical architecture with similarities to certain types of amyloid fibril, suggesting that the accumulation of at least some forms of amyloid oligomers is likely to be a consequence of very slow rates of rearrangement of their β-sheet structures. Our findings reveal the inherent multiplicity of the process of protein misfolding and the key role the β-sheet geometry acquired in the early stages of the self-assembly process plays in dictating the kinetic stability and the pathological nature of individual oligomeric species. PMID:25855634

  10. Two-dimensional binary clusters in a hard-wall trap: Structural and spectral properties

    SciTech Connect

    Yang Wen; Kong Minghui; Milosevic, M. V.; Zeng Zhi; Peeters, F. M.

    2007-10-15

    Within the Monte Carlo formalism supplemented by the modified Newton-Raphson optimization technique, we investigated structural and dynamical properties of two-dimensional binary clusters confined in an external hard-wall potential. Two species of differently charged classical particles, interacting through the repulsive Coulomb force are confined in the cluster. Subtle changes in the energy landscape and the stable cluster configurations are investigated as a function of the total number of particles and the relative number of each of the two particle species. The excitation spectrum and the normal modes corresponding to the ground-state configuration of the system are discussed, and the lowest nonzero eigenfrequency as a measure of the stability of the cluster is analyzed. The influence of the particle mass on the eigenfrequencies and eigenmodes are studied, i.e., we study a binary system of particles with different charge and different mass. Several unique features distinct from a monodisperse system are obtained.

  11. Structure and trapping of three-dimensional dust clouds in a capacitively coupled rf-discharge

    SciTech Connect

    Arp, O.; Block, D.; Piel, A.

    2005-10-31

    In this survey the recently found 'Coulomb balls' are discussed, which show an unusual kind of crystalline order. These three-dimensional dust clouds consisting of hundreds or thousands of micrometer-sized dust particles have a spherical shape and exist in a wide range of plasma conditions. Coulomb balls are optically highly transparent and have macroscopic dimensions of several millimeters in diameter. The clouds allow for the observation of each single particle and thus the complete reconstruction of the crystal structure by means of video microscopy techniques. The particles are arranged in distinct nested shells in which they form patterns with mostly five and six neighbors. The confinement of Coulomb balls by dielectric walls involves electric forces, surface charges, ion drag forces, and thermophoretic levitation. The thermophoretic force field is measured with tracer particles and particle image velocimetry (PIV). The electric forces are derived from simulations with the two-dimensional SIGLO-2D code. It is shown the the sum of all confining forces results in a stable potential well that describes levitation and spherical confinement of the Coulomb ball.

  12. Safe trapping of cesium into pollucite structure by hot-pressing method

    NASA Astrophysics Data System (ADS)

    Omerašević, Mia; Matović, Ljiljana; Ružić, Jovana; Golubović, Željko; Jovanović, Uroš; Mentus, Slavko; Dondur, Vera

    2016-06-01

    A simple one-step method with direct thermal conversion at lower temperatures for preparing a stabile Cs-aluminsilicate phase, known as pollucite, is presented. Cs-exchanged form of Na, Ca-LTA type of zeolite (Cs-LTA) was pressureless sintered and hot pressed at certain temperatures in order to obtain pollucite. XRD and FTIR analysis were used to study structural changes of Cs-LTA before and after thermal treatments. Pressureless sintered sample recrystallized into pollucite phase after heat treatment at 1000 °C (3 h) (PLS1000) and hot pressed sample at 750 °C (3 h) using pressure of 35 MPa (HP750), indicating reduced temperature of 250°. SEM micrographs confirmed that HP750 has higher density than PLS1000 which leads to higher value of compressive strength. The HP750 showed better resistance to Cs leaching than the PLS1000. Base on these results one can conclude that hot pressing is the promising method for the permanent disposal of Cs radionuclides.

  13. Crystal Structures of Nitroalkane Oxidase: Insights into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped during Turnover‡

    PubMed Central

    Nagpal, Akanksha; Valley, Michael P.; Fitzpatrick, Paul F.; Orville, Allen M.

    2006-01-01

    Nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of neutral nitroalkanes to the corresponding aldehydes or ketones with the production of H2O2 and nitrite. The flavoenzyme is a new member of the acyl-CoA dehydrogenase (ACAD) family, but it does not react with acyl-CoA substrates. We present the 2.2 Å resolution crystal structure of NAO trapped during the turnover of nitroethane as a covalent N5–FAD adduct (ES*). The homotetrameric structure of ES* was solved by MAD phasing with 52 Se-Met sites in an orthorhombic space group. The electron density for the N5-(2-nitrobutyl)-1,5-dihydro-FAD covalent intermediate is clearly resolved. The structure of ES* was used to solve the crystal structure of oxidized NAO at 2.07 Å resolution. The c axis for the trigonal space group of oxidized NAO is 485 Å, and there are six subunits (1½ holoenzymes) in the asymmetric unit. Four of the active sites contain spermine (EI), a weak competitive inhibitor, and two do not contain spermine (Eox). The active-site structures of Eox, EI, and ES* reveal a hydrophobic channel that extends from the exterior of the protein and terminates at Asp402 and the N5 position on the re face of the FAD. Thus, Asp402 is in the correct position to serve as the active-site base, where it is proposed to abstract the α proton from neutral nitroalkane substrates. The structures for NAO and various members of the ACAD family overlay with root-mean-square deviations between 1.7 and 3.1 Å. The homologous region typically spans more than 325 residues and includes Glu376, which is the active-site base in the prototypical member of the ACAD family. However, NAO and the ACADs exhibit differences in hydrogen-bonding patterns between the respective active-site base, substrate molecules, and FAD. These likely differentiate NAO from the homologues and, consequently, are proposed to result in the unique reaction mechanism of NAO. PMID:16430210

  14. Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.

    PubMed

    Nagpal, Akanksha; Valley, Michael P; Fitzpatrick, Paul F; Orville, Allen M

    2006-01-31

    Nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of neutral nitroalkanes to the corresponding aldehydes or ketones with the production of H(2)O(2) and nitrite. The flavoenzyme is a new member of the acyl-CoA dehydrogenase (ACAD) family, but it does not react with acyl-CoA substrates. We present the 2.2 A resolution crystal structure of NAO trapped during the turnover of nitroethane as a covalent N5-FAD adduct (ES*). The homotetrameric structure of ES* was solved by MAD phasing with 52 Se-Met sites in an orthorhombic space group. The electron density for the N5-(2-nitrobutyl)-1,5-dihydro-FAD covalent intermediate is clearly resolved. The structure of ES was used to solve the crystal structure of oxidized NAO at 2.07 A resolution. The c axis for the trigonal space group of oxidized NAO is 485 A, and there are six subunits (1(1)/(2) holoenzymes) in the asymmetric unit. Four of the active sites contain spermine (EI), a weak competitive inhibitor, and two do not contain spermine (E(ox)). The active-site structures of E(ox), EI, and ES* reveal a hydrophobic channel that extends from the exterior of the protein and terminates at Asp402 and the N5 position on the re face of the FAD. Thus, Asp402 is in the correct position to serve as the active-site base, where it is proposed to abstract the alpha proton from neutral nitroalkane substrates. The structures for NAO and various members of the ACAD family overlay with root-mean-square deviations between 1.7 and 3.1 A. The homologous region typically spans more than 325 residues and includes Glu376, which is the active-site base in the prototypical member of the ACAD family. However, NAO and the ACADs exhibit differences in hydrogen-bonding patterns between the respective active-site base, substrate molecules, and FAD. These likely differentiate NAO from the homologues and, consequently, are proposed to result in the unique reaction mechanism of NAO. PMID:16430210

  15. Crystal Structures of Nitroalkane Oxidase: Insights into the Reaction Mechanism of a Covalent Complex of the Flavoenzyme Trapped During Turnover

    SciTech Connect

    Nagpal,A.; Valley, M.; Fitzpatrick, P.; Orville, A.

    2006-01-01

    Nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of neutral nitroalkanes to the corresponding aldehydes or ketones with the production of H2O2 and nitrite. The flavoenzyme is a new member of the acyl-CoA dehydrogenase (ACAD) family, but it does not react with acyl-CoA substrates. We present the 2.2 Angstroms resolution crystal structure of NAO trapped during the turnover of nitroethane as a covalent N5-FAD adduct (ES*). The homotetrameric structure of ES* was solved by MAD phasing with 52 Se-Met sites in an orthorhombic space group. The electron density for the N5-(2-nitrobutyl)-1,5-dihydro-FAD covalent intermediate is clearly resolved. The structure of ES* was used to solve the crystal structure of oxidized NAO at 2.07 Angstroms resolution. The c axis for the trigonal space group of oxidized NAO is 485 Angstroms, and there are six subunits (11/2 holoenzymes) in the asymmetric unit. Four of the active sites contain spermine (EI), a weak competitive inhibitor, and two do not contain spermine (E{sup ox}). The active-site structures of E{sup ox}, EI, and ES* reveal a hydrophobic channel that extends from the exterior of the protein and terminates at Asp402 and the N5 position on the re face of the FAD. Thus, Asp402 is in the correct position to serve as the active-site base, where it is proposed to abstract the {alpha} proton from neutral nitroalkane substrates. The structures for NAO and various members of the ACAD family overlay with root-mean-square deviations between 1.7 and 3.1 Angstroms. The homologous region typically spans more than 325 residues and includes Glu376, which is the active-site base in the prototypical member of the ACAD family. However, NAO and the ACADs exhibit differences in hydrogen-bonding patterns between the respective active-site base, substrate molecules, and FAD. These likely differentiate NAO from the homologues and, consequently, are proposed to result in the unique reaction mechanism of NAO.

  16. Structure of a RING E3 Trapped in Action Reveals Ligation Mechanism for the Ubiquitin-like Protein NEDD8

    PubMed Central

    Scott, Daniel C.; Sviderskiy, Vladislav O.; Monda, Julie K.; Lydeard, John R.; Cho, Shein Ei; Harper, J. Wade; Schulman, Brenda A.

    2014-01-01

    SUMMARY Most E3 ligases use a RING domain to activate a thioester-linked E2~ubiquitin-like protein (UBL) intermediate and promote UBL transfer to a remotely bound target protein. Nonetheless, RING E3 mechanisms matching a specific UBL and acceptor lysine remain elusive, including for RBX1, which mediates NEDD8 ligation to cullins and >10% of all ubiquitination. We report the structure of a trapped RING E3-E2~UBL-target intermediate representing RBX1-UBC12~NEDD8-CUL1-DCN1, which reveals the mechanism of NEDD8 ligation and how a particular UBL and acceptor lysine are matched by a multifunctional RING E3. Numerous mechanisms specify cullin neddylation while preventing noncognate ubiquitin ligation. Notably, E2-E3-target and RING-E2~UBL modules are not optimized to function independently, but instead require integration by the UBL and target for maximal reactivity. The UBL and target regulate the catalytic machinery by positioning the RINGE2~UBL catalytic center, licensing the acceptor lysine, and influencing E2 reactivity, thereby driving their specific coupling by a multifunctional RING E3. PMID:24949976

  17. PAD4 mediated histone hypercitrullination induces heterochromatin decondensation and chromatin unfolding to form neutrophil extracellular trap-like structures

    PubMed Central

    Leshner, Marc; Wang, Shu; Lewis, Carrie; Zheng, Han; Chen, Xiangyun Amy; Santy, Lorraine; Wang, Yanming

    2012-01-01

    NETosis, the process wherein neutrophils release highly decondensed chromatin called neutrophil extracellular traps (NETs), has gained much attention as an alternative means of killing bacteria. In vivo, NETs are induced by bacteria and pro-inflammatory cytokines. We have reported that peptidylarginine deiminase 4 (PAD4), an enzyme that converts Arg or monomethyl-Arg to citrulline in histones, is essential for NET formation. The areas of extensive chromatin decondensation along the NETs were rich in histone citrullination. Here, upon investigating the effect of global citrullination in cultured cells, we discovered that PAD4 overexpression in osteosarcoma U2OS cells induces extensive chromatin decondensation independent of apoptosis. The highly decondensed chromatin is released to the extracellular space and stained strongly by a histone citrulline-specific antibody. The structure of the decondensed chromatin is reminiscent of NETs but is unique in that it occurs without stimulation of cells with pro-inflammatory cytokines and bacteria. Furthermore, histone citrullination during chromatin decondensation can dissociate heterochromatin protein 1 beta (HP1β) thereby offering a new molecular mechanism for understanding how citrullination regulates chromatin function. Taken together, our study suggests that PAD4 mediated citrullination induces chromatin decondensation, implicating its essential role in NET formation under physiological conditions in neutrophils. PMID:23060885

  18. Oxygen trapped by rare earth tetrahedral clusters in Nd4FeOS6: Crystal structure, electronic structure, and magnetic properties

    DOE PAGESBeta

    Lin, Qisheng; Taufour, Valentin; Zhang, Yuemei; Wood, Max; Drtina, Thomas; Bud’ko, Sergey L.; Canfield, Paul C.; Miller, Gordon J.

    2015-05-22

    Single crystals of Nd4FeOS6 were grown from an Fe-S eutectic solution. Single crystal X-ray diffraction analysis revealed a Nd4MnOSe6-type structure (P63mc, a = 9.2693(1) Å, c = 6.6650(1) Å, V = 495.94(1) Å3, Z = 2), featuring parallel chains of face-sharing [FeS6x1/2]4- trigonal antiprisms and interlinked [Nd4OS3]4+ cubane-like clusters. Oxygen atoms were found to be trapped by Nd4 clusters in the [Nd4OS3]4+ chains. Structural differences among Nd4MnOSe6-type Nd4FeOS6 and the related La3CuSiS7- and Pr8CoGa3-type structures have been described. Magnetic susceptibility measurements on Nd4FeOS6 suggested the dominance of antiferromagnetic interactions at low temperature, but no magnetic ordering down to 2 Kmore » was observed. Spin-polarized electronic structure calculations revealed magnetic frustration with dominant antiferromagnetic interactions.« less

  19. Oxygen trapped by rare earth tetrahedral clusters in Nd4FeOS6: Crystal structure, electronic structure, and magnetic properties

    NASA Astrophysics Data System (ADS)

    Lin, Qisheng; Taufour, Valentin; Zhang, Yuemei; Wood, Max; Drtina, Thomas; Bud'ko, Sergey L.; Canfield, Paul C.; Miller, Gordon J.

    2015-09-01

    Single crystals of Nd4FeOS6 were grown from an Fe-S eutectic solution. Single crystal X-ray diffraction analysis revealed a Nd4MnOSe6-type structure (P63mc, a=9.2693(1) Å, c=6.6650(1)Å, V=495.94(1) Å3, Z=2), featuring parallel chains of face-sharing [FeS6×1/2]4- trigonal antiprisms and interlinked [Nd4OS3]4+ cubane-like clusters. Oxygen atoms were found to be trapped by Nd4 clusters in the [Nd4OS3]4+ chains. Structural differences among Nd4MnOSe6-type Nd4FeOS6 and the related La3CuSiS7- and Pr8CoGa3-type structures have been described. Magnetic susceptibility measurements on Nd4FeOS6 suggested the dominance of antiferromagnetic interactions at low temperature, but no magnetic ordering down to 2 K was observed. Spin-polarized electronic structure calculations revealed magnetic frustration with dominant antiferromagnetic interactions.

  20. Multi-functional stacked light-trapping structure for stabilizing and boosting solar-electricity efficiency of hydrogenated amorphous silicon solar cells

    NASA Astrophysics Data System (ADS)

    Huang, Wen-Hsien; Shieh, Jia-Min; Pan, Fu-Ming; Shen, Chang-Hong; Huang, Jung Y.; Wu, Tsung-Ta; Kao, Ming-Hsuan; Hsiao, Tzu-Hsuan; Yu, Peichen; Kuo, Hao-Chung; Lee, Ching-Ting

    2013-08-01

    A sandwiched light-trapping electrode structure, which consists of a capping aluminum-doped ZnO (AZO) layer, dispersed plasmonic Au-nanoparticles (Au-NPs), and a micro-structured transparent conductive substrate, is employed to stabilize and boost the conversion-efficiency of hydrogenated amorphous silicon (a-Si:H) solar cells. The conformal AZO ultrathin layer (5 nm) smoothened the Au-NP-dispersed electrode surface, thereby reducing defects across the AZO/a-Si:H interface and resulting in a high resistance to photo-degradation in the ultraviolet-blue photoresponse band. With the plasmonic light-trapping structure, the cell has a high conversion-efficiency of 10.1% and the photo-degradation is as small as 7%.

  1. Using Fault-Zone Trapped Waves from Teleseismic Earthquakes to Document Deep Structure of the Calico Fault in Mojave Desert

    NASA Astrophysics Data System (ADS)

    Li, Y. G.; Chen, P.; Lee, E. J.

    2014-12-01

    Fault-zone trapped waves (FZTWs) are observed at a square seismic array consisting of 40 intermediate-period stations deployed adjacent to the Calico Fault (CF) in Mojave Desert, California for teleseismic earthquakes and used to characterize the deep structure of fault damage zone. In the previous study, traveltimes inverse, FZTWs generated by explosions and local earthquakes, and InSAR observations have been used to document the seismic velocity structure of the CF zone, within which velocities are reduced to ~40% in the center of a 1.5-km-wide compliant zone along the fault strike and extending to 5-6 km depth at the array site [Cochran, et al., 2009]. In order to better address the deep portion of the CF beyond the depth coverage of local earthquakes, we use FZTWs recorded at this array atop the CF for teleseismic earthquakes which have great promise for providing unprecedented constrains of the depth extension of fault-zone damage structure because the FZTWs arise from teleseismic waves incident at the fault bottom at deep level. We examined the data from 72 M≥6 teleseismic earthquakes recorded at the Calico array, and identified significant FZTWs with much larger amplitudes and longer wavetrains starting ~5-s after the first-arrivals at stations located within the compliant zone along the CF strike than those registered at farther stations for teleseismic earthquakes occurring at great depths with less surface wave affect. We interpret observed FZTWs being formed by S-waves converted from P waves at the Moho (~30-km depth) and entering the bottom of the CF. The FZTWs from teleseismic earthquakes show consistent longer wavetrains (~12-s) than those (3-8-s) recorded at same stations for local earthquakes at shallow depths, indicating that the CF low-velocity compliant zone likely extends throughout much of the seismogenic zone as a result of the portion of energy expended during rupture in historical earthquakes to drive cracking and yielding of rock and

  2. Coupled optical-thermal-fluid and structural analyses of novel light-trapping tubular panels for concentrating solar power receivers

    NASA Astrophysics Data System (ADS)

    Ortega, Jesus D.; Christian, Joshua M.; Yellowhair, Julius E.; Ho, Clifford K.

    2015-09-01

    Traditional tubular receivers used in concentrating solar power are formed using tubes connected to manifolds to form panels; which in turn are arranged in cylindrical or rectangular shapes. Previous and current tubular receivers, such as the ones used in Solar One, Solar Two, and most recently the Ivanpah solar plants, have used a black paint coating to increase the solar absorptance of the receiver. However, these coatings degrade over time and must be reapplied, increasing the receiver maintenance cost. This paper presents the thermal efficiency evaluation of novel receiver tubular panels that have a higher effective solar absorptance due to a light-trapping effect created by arranging the tubes in each panel into unique geometric configurations. Similarly, the impact of the incidence angle on the effective solar absorptance and thermal efficiency is evaluated. The overarching goal of this work is to achieve effective solar absorptances of ~90% and thermal efficiencies above 85% without using an absorptance coating. Several panel geometries were initially proposed and were down-selected based on structural analyses considering the thermal and pressure loading requirements of molten salt and supercritical carbon-dioxide receivers. The effective solar absorptance of the chosen tube geometries and panel configurations were evaluated using the ray-tracing modeling capabilities of SolTrace. The thermal efficiency was then evaluated by coupling computational fluid dynamics with the ray-tracing results using ANSYS Fluent. Compared to the base case analysis (flat tubular panel), the novel tubular panels have shown an increase in effective solar absorptance and thermal efficiency by several percentage points.

  3. Broadband perfect light trapping in the thinnest monolayer graphene-MoS2 photovoltaic cell: the new application of spectrum-splitting structure.

    PubMed

    Wu, Yun-Ben; Yang, Wen; Wang, Tong-Biao; Deng, Xin-Hua; Liu, Jiang-Tao

    2016-01-01

    The light absorption of a monolayer graphene-molybdenum disulfide photovoltaic (GM-PV) cell in a wedge-shaped microcavity with a spectrum-splitting structure is investigated theoretically. The GM-PV cell, which is three times thinner than the traditional photovoltaic cell, exhibits up to 98% light absorptance in a wide wavelength range. This rate exceeds the fundamental limit of nanophotonic light trapping in solar cells. The effects of defect layer thickness, GM-PV cell position in the microcavity, incident angle, and lens aberration on the light absorptance of the GM-PV cell are explored. Despite these effects, the GM-PV cell can still achieve at least 90% light absorptance with the current technology. Our proposal provides different methods to design light-trapping structures and apply spectrum-splitting systems. PMID:26864749

  4. Broadband perfect light trapping in the thinnest monolayer graphene-MoS2 photovoltaic cell: the new application of spectrum-splitting structure

    PubMed Central

    Wu, Yun-Ben; Yang, Wen; Wang, Tong-Biao; Deng, Xin-Hua; Liu, Jiang-Tao

    2016-01-01

    The light absorption of a monolayer graphene-molybdenum disulfide photovoltaic (GM-PV) cell in a wedge-shaped microcavity with a spectrum-splitting structure is investigated theoretically. The GM-PV cell, which is three times thinner than the traditional photovoltaic cell, exhibits up to 98% light absorptance in a wide wavelength range. This rate exceeds the fundamental limit of nanophotonic light trapping in solar cells. The effects of defect layer thickness, GM-PV cell position in the microcavity, incident angle, and lens aberration on the light absorptance of the GM-PV cell are explored. Despite these effects, the GM-PV cell can still achieve at least 90% light absorptance with the current technology. Our proposal provides different methods to design light-trapping structures and apply spectrum-splitting systems. PMID:26864749

  5. Broadband perfect light trapping in the thinnest monolayer graphene-MoS2 photovoltaic cell: the new application of spectrum-splitting structure

    NASA Astrophysics Data System (ADS)

    Wu, Yun-Ben; Yang, Wen; Wang, Tong-Biao; Deng, Xin-Hua; Liu, Jiang-Tao

    2016-02-01

    The light absorption of a monolayer graphene-molybdenum disulfide photovoltaic (GM-PV) cell in a wedge-shaped microcavity with a spectrum-splitting structure is investigated theoretically. The GM-PV cell, which is three times thinner than the traditional photovoltaic cell, exhibits up to 98% light absorptance in a wide wavelength range. This rate exceeds the fundamental limit of nanophotonic light trapping in solar cells. The effects of defect layer thickness, GM-PV cell position in the microcavity, incident angle, and lens aberration on the light absorptance of the GM-PV cell are explored. Despite these effects, the GM-PV cell can still achieve at least 90% light absorptance with the current technology. Our proposal provides different methods to design light-trapping structures and apply spectrum-splitting systems.

  6. Structural and thermodynamic characterization of the interaction between two periplasmic Treponema pallidum lipoproteins that are components of a TPR-protein-associated TRAP transporter (TPAT)

    PubMed Central

    Brautigam, Chad A.; Deka, Ranjit K.; Schuck, Peter; Tomchick, Diana R.; Norgard, Michael V.

    2012-01-01

    Tripartite ATP-independent periplasmic transporters (TRAP-Ts) are bacterial transport systems that have been implicated in the import of small molecules into the cytoplasm. A newly discovered subfamily of TRAP-Ts (TPATs) has four components. Three are common to both TRAP-Ts and TPATs: the P component, a ligand-binding protein, and a transmembrane symporter apparatus comprising the M and Q components (M and Q are sometimes fused to form a single polypeptide). TPATs are distinguished from TRAP-Ts by the presence of a unique protein called the “T component”. In Treponema pallidum, this protein (TatT) is a water-soluble trimer whose protomers are each perforated by a pore. Its respective P component (TatPT) interacts with the TatT in vitro and in vivo. In this work, we further characterized this interaction. Co-crystal structures of two complexes between the two proteins confirm that up to three monomers of TatPT can bind to the TatT trimer. A putative ligand-binding cleft of TatPT aligns with the pore of TatT, strongly suggesting ligand transfer between T and PT. We used a combination of site-directed mutagenesis and analytical ultracentrifugation to derive thermodynamic parameters for the interactions. These observations confirm that the observed crystallographic interface is recapitulated in solution. These results prompt a hypothesis of the molecular mechanism(s) of hydrophobic ligand transport by the TPATs. PMID:22504226

  7. Percolation mechanism through trapping/de-trapping process at defect states for resistive switching devices with structure of Ag/Si{sub x}C{sub 1−x}/p-Si

    SciTech Connect

    Liu, Yanhong; Gao, Ping; Li, La; Peng, Wei; Jiang, Xuening; Zhang, Jialiang

    2014-08-14

    Pure Si{sub x}C{sub 1−x} (x > 0.5) and B-containing Si{sub x}C{sub 1−x} (x > 0.5) based resistive switching devices (RSD) with the structure of Ag/Si{sub x}C{sub 1−x}/p-Si were fabricated and their switching characteristics and mechanism were investigated systematically. Percolation mechanism through trapping/ de-trapping at defect states was suggested for the switching process. Through the introduction of B atoms into Si{sub x}C{sub 1−x}, the density of defect states was reduced, then, the SET and RESET voltages were also decreased. Based on the percolation theory, the dependence of SET/RESET voltage on the density of defect states was analyzed. These results supply a deep understanding for the SiC-based RSD, which have a potential application in extreme ambient conditions.

  8. Oxygen trapped by rare earth tetrahedral clusters in Nd4FeOS6: Crystal structure, electronic structure, and magnetic properties

    SciTech Connect

    Lin, Qisheng; Taufour, Valentin; Zhang, Yuemei; Wood, Max; Drtina, Thomas; Bud’ko, Sergey L.; Canfield, Paul C.; Miller, Gordon J.

    2015-05-22

    Single crystals of Nd4FeOS6 were grown from an Fe-S eutectic solution. Single crystal X-ray diffraction analysis revealed a Nd4MnOSe6-type structure (P63mc, a = 9.2693(1) Å, c = 6.6650(1) Å, V = 495.94(1) Å3, Z = 2), featuring parallel chains of face-sharing [FeS6x1/2]4- trigonal antiprisms and interlinked [Nd4OS3]4+ cubane-like clusters. Oxygen atoms were found to be trapped by Nd4 clusters in the [Nd4OS3]4+ chains. Structural differences among Nd4MnOSe6-type Nd4FeOS6 and the related La3CuSiS7- and Pr8CoGa3-type structures have been described. Magnetic susceptibility measurements on Nd4FeOS6 suggested the dominance of antiferromagnetic interactions at low temperature, but no magnetic ordering down to 2 K was observed. Spin-polarized electronic structure calculations revealed magnetic frustration with dominant antiferromagnetic interactions.

  9. Evidence for octupole vibration in the superdeformed well of {sup 190}Hg from eurogam

    SciTech Connect

    Crowell, B.; Carpenter, M.P.; Janssens, R.V.F.

    1995-08-01

    Gammasphere experiments in 1993-94 brought to light the existence of an excited superdeformed (SD) band in {sup 190}Hg with the unusual property of decaying entirely to the lowest (yrast) SD band over 3-4 transitions, rather than to the normally deformed states as is usually the case in the A {approximately} 150 and A {approximately} 190 regions of superdeformation. Although M1 transitions between signature-partner SD bands were previously observed in {sup 193}Hg, no such mechanism was available to explain the situation in the even-even nucleus {sup 190}Hg, whose yrast SD band has no signature partner. The best explanation appears to lie in long-standing theoretical predictions that the SD minimum in the potential energy surface would be quite soft with respect to octupole vibrations. This would lead to enhanced E1 transitions connecting the one-phonon and zero-phonon states. The data and this interpretation were published. A shortcoming of the Gammasphere experiments was that they did not allow the definitive measurement of the energies of the gamma-ray transitions connecting the two bands, due to the very weak population of the excited band ({approximately}0.05% of the {sup 190}Hg channel) and also partly, we believed, to the angular distributions of the transitions, which were peaked near 90 degrees, where Gammasphere had few detectors.

  10. Ripple Trap

    NASA Technical Reports Server (NTRS)

    2006-01-01

    3 April 2006 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows the margin of a lava flow on a cratered plain in the Athabasca Vallis region of Mars. Remarkably, the cratered plain in this scene is essentially free of bright, windblown ripples. Conversely, the lava flow apparently acted as a trap for windblown materials, illustrated by the presence of the light-toned, wave-like texture over much of the flow. That the lava flow surface trapped windblown sand and granules better than the cratered plain indicates that the flow surface has a rougher texture at a scale too small to resolve in this image.

    Location near: 10.7oN, 204.5oW Image width: 3 km (1.9 mi) Illumination from: lower left Season: Northern Winter

  11. Synthesis, Structural Elucidation, and Biological Evaluation of NSC12, an Orally Available Fibroblast Growth Factor (FGF) Ligand Trap for the Treatment of FGF-Dependent Lung Tumors.

    PubMed

    Castelli, Riccardo; Giacomini, Arianna; Anselmi, Mattia; Bozza, Nicole; Vacondio, Federica; Rivara, Silvia; Matarazzo, Sara; Presta, Marco; Mor, Marco; Ronca, Roberto

    2016-05-26

    NSC12 is an orally available pan-FGF trap able to inhibit FGF2/FGFR interaction and endowed with promising antitumor activity. It was identified by virtual screening from a NCI small molecule library, but no data were available about its synthesis, stereochemistry, and physicochemical properties. We report here a synthetic route that allowed us to characterize and unambiguously identify the structure of the active compound by a combination of NMR spectroscopy and in silico conformational analysis. The synthetic protocol allowed us to sustain experiments aimed at assessing its therapeutic potential for the treatment of FGF-dependent lung cancers. A crucial step in the synthesis generated a couple of diastereoisomers, with only one able to act as a FGF trap molecule and to inhibit FGF-dependent receptor activation, cell proliferation, and tumor growth when tested in vitro and in vivo on murine and human lung cancer cells. PMID:27138345

  12. Nanocarpets for Trapping Microscopic Particles

    NASA Technical Reports Server (NTRS)

    Noca, Flavio; Chen, Fei; Hunt, Brian; Bronikowski, Michael; Hoenk, Michael; Kowalczyk, Robert; Choi, Daniel

    2004-01-01

    Nanocarpets that is, carpets of carbon nanotubes are undergoing development as means of trapping microscopic particles for scientific analysis. Examples of such particles include inorganic particles, pollen, bacteria, and spores. Nanocarpets can be characterized as scaled-down versions of ordinary macroscopic floor carpets, which trap dust and other particulate matter, albeit not purposefully. Nanocarpets can also be characterized as mimicking both the structure and the particle-trapping behavior of ciliated lung epithelia, the carbon nanotubes being analogous to cilia. Carbon nanotubes can easily be chemically functionalized for selective trapping of specific particles of interest. One could, alternatively, use such other three-dimensionally-structured materials as aerogels and activated carbon for the purposeful trapping of microscopic particles. However, nanocarpets offer important advantages over these alternative materials: (1) Nanocarpets are amenable to nonintrusive probing by optical means; and (2) Nanocarpets offer greater surface-to-volume ratios.

  13. Halo ion trap mass spectrometer.

    PubMed

    Austin, Daniel E; Wang, Miao; Tolley, Samuel E; Maas, Jeffrey D; Hawkins, Aaron R; Rockwood, Alan L; Tolley, H Dennis; Lee, Edgar D; Lee, Milton L

    2007-04-01

    We describe a novel radio frequency ion trap mass analyzer based on toroidal trapping geometry and microfabrication technology. The device, called the halo ion trap, consists of two parallel ceramic plates, the facing surfaces of which are imprinted with sets of concentric ring electrodes. Radii of the imprinted rings range from 5 to 12 mm, and the spacing between the plates is 4 mm. Unlike conventional ion traps, in which hyperbolic metal electrodes establish equipotential boundary conditions, electric fields in the halo ion trap are established by applying different radio frequency potentials to each ring. The potential on each ring can be independently optimized to provide the best trapping field. The halo ion trap features an open structure, allowing easy access for in situ ionization. The toroidal geometry provides a large trapping and analyzing volume, increasing the number of ions that can be stored and reducing the effects of space-charge on mass analysis. Preliminary mass spectra show resolution (m/Deltam) of 60-75 when the trap is operated at 1.9 MHz and 500 Vp-p. PMID:17335180

  14. Cold atoms in videotape micro-traps

    NASA Astrophysics Data System (ADS)

    Sinclair, C. D. J.; Retter, J. A.; Curtis, E. A.; Hall, B. V.; Llorente Garcia, I.; Eriksson, S.; Sauer, B. E.; Hinds, E. A.

    2005-08-01

    We describe an array of microscopic atom traps formed by a pattern of magnetisation on a piece of videotape. We describe the way in which cold atoms are loaded into one of these micro-traps and how the trapped atom cloud is used to explore the properties of the trap. Evaporative cooling in the micro-trap down to a temperature of 1~μK allows us to probe the smoothness of the trapping potential and reveals some inhomogeneity produced by the magnetic film. We discuss future prospects for atom chips based on microscopic permanent-magnet structures.

  15. Multiple octupole-type band structures in {sup 220}Th: Reflection-asymmetric tidal waves?

    SciTech Connect

    Reviol, W.; Chiara, C. J.; Montero, M.; Sarantites, D. G.; Pechenaya, O. L.; Carpenter, M. P.; Janssens, R. V. F.; Khoo, T. L.; Lauritsen, T.; Lister, C. J.; Seweryniak, D.; Zhu, S.; Frauendorf, S. G.

    2006-10-15

    The {sup 220}Th level scheme has been considerably extended from an experiment using the {sup 26}Mg+{sup 198}Pt reaction at 128 MeV. The evaporation residues from this very fissile system were selected with the HERCULES detector system and residue-gated {gamma} rays were measured with Gammasphere. The simplex feature (alternating-parity levels) persists up to the highest spins observed (23({Dirac_h}/2{pi})), but the nucleus exhibits a more vibrational-like behavior than the heavier Th isotopes. In addition, a doubling of the negative-parity, odd-spin states is seen as well as a staggering of the B(E1)/B(E2) ratios. A new interpretation based on a picture of tidal waves on a reflection-asymmetric nuclear surface is proposed.

  16. Camera Traps on Wildlife Crossing Structures as a Tool in Gray Wolf (Canis lupus) Management - Five-Years Monitoring of Wolf Abundance Trends in Croatia.

    PubMed

    Šver, Lidija; Bielen, Ana; Križan, Josip; Gužvica, Goran

    2016-01-01

    The conservation of gray wolf (Canis lupus) and its coexistence with humans presents a challenge and requires continuous monitoring and management efforts. One of the non-invasive methods that produces high-quality wolf monitoring datasets is camera trapping. We present a novel monitoring approach where camera traps are positioned on wildlife crossing structures that channel the animals, thereby increasing trapping success and increasing the cost-efficiency of the method. In this way we have followed abundance trends of five wolf packs whose home ranges are intersected by a motorway which spans throughout the wolf distribution range in Croatia. During the five-year monitoring of six green bridges we have recorded 28 250 camera-events, 132 with wolves. Four viaducts were monitored for two years, recording 4914 camera-events, 185 with wolves. We have detected a negative abundance trend of the monitored Croatian wolf packs since 2011, especially severe in the northern part of the study area. Further, we have pinpointed the legal cull as probable major negative influence on the wolf pack abundance trends (linear regression, r2 > 0.75, P < 0.05). Using the same approach we did not find evidence for a negative impact of wolves on the prey populations, both wild ungulates and livestock. We encourage strict protection of wolf in Croatia until there is more data proving population stability. In conclusion, quantitative methods, such as the one presented here, should be used as much as possible when assessing wolf abundance trends. PMID:27327498

  17. Camera Traps on Wildlife Crossing Structures as a Tool in Gray Wolf (Canis lupus) Management - Five-Years Monitoring of Wolf Abundance Trends in Croatia

    PubMed Central

    Križan, Josip; Gužvica, Goran

    2016-01-01

    The conservation of gray wolf (Canis lupus) and its coexistence with humans presents a challenge and requires continuous monitoring and management efforts. One of the non-invasive methods that produces high-quality wolf monitoring datasets is camera trapping. We present a novel monitoring approach where camera traps are positioned on wildlife crossing structures that channel the animals, thereby increasing trapping success and increasing the cost-efficiency of the method. In this way we have followed abundance trends of five wolf packs whose home ranges are intersected by a motorway which spans throughout the wolf distribution range in Croatia. During the five-year monitoring of six green bridges we have recorded 28 250 camera-events, 132 with wolves. Four viaducts were monitored for two years, recording 4914 camera-events, 185 with wolves. We have detected a negative abundance trend of the monitored Croatian wolf packs since 2011, especially severe in the northern part of the study area. Further, we have pinpointed the legal cull as probable major negative influence on the wolf pack abundance trends (linear regression, r2 > 0.75, P < 0.05). Using the same approach we did not find evidence for a negative impact of wolves on the prey populations, both wild ungulates and livestock. We encourage strict protection of wolf in Croatia until there is more data proving population stability. In conclusion, quantitative methods, such as the one presented here, should be used as much as possible when assessing wolf abundance trends. PMID:27327498

  18. COLD TRAP

    DOEpatents

    Milleron, N.

    1963-03-12

    An improved linear-flow cold trap is designed for highvacuum applications such as mitigating back migration of diffusion pump oil moiecules. A central pot of liquid nitrogen is nested within and supported by a surrounding, vertical, helical coil of metai sheet, all enveloped by a larger, upright, cylindrical, vacuum vessel. The vertical interstices between successive turns of the coil afford lineal, axial, high-vacuum passages between open mouths at top and bottom of said vessel, while the coil, being cold by virtue of thermal contact of its innermost turn with the nitrogen pot, affords expansive proximate condensation surfaces. (AEC)

  19. VACUUM TRAP

    DOEpatents

    Gordon, H.S.

    1959-09-15

    An improved adsorption vacuum trap for use in vacuum systems was designed. The distinguishing feature is the placement of a plurality of torsionally deformed metallic fins within a vacuum jacket extending from the walls to the central axis so that substantially all gas molecules pass through the jacket will impinge upon the fin surfaces. T fins are heated by direct metallic conduction, thereby ol taining a uniform temperature at the adeorbing surfaces so that essentially all of the condensible impurities from the evacuating gas are removed from the vacuum system.

  20. Possible octupole correlation in {sup 147}Pr and {pi}h{sub 11/2} bands in {sup 149,151}Pr

    SciTech Connect

    Hwang, J. K.; Ramayya, A. V.; Hamilton, J. H.; Jones, E. F.; Gore, P. M.; Zhu, S. J.; Beyer, C. J.; Kormicki, J.; Zhang, X. Q.; Peker, L. K.

    2000-10-01

    Neutron-rich {sup 147,149,151}Pr nuclei, produced in the spontaneous fission of {sup 252}Cf, were studied using the Gammasphere array. Possible parity doublets in {sup 147}Pr with N=88 and {pi}h{sub 11/2} bands in {sup 149,151}Pr are proposed. These new data on the level structures of odd Pr isotopes suggest that octupole correlations may also be present in the neutron-rich {sub 59}{sup 147}Pr{sub 88} nucleus such as those observed in {sub 58}{sup 146}Ce{sub 88}, and also that the h{sub 11/2} bands in the {sup 149,151}Pr track in energy the yrast bands in {sup 148,150}Ce. The backbending related to the breaking of the neutron i{sub 13/2} pair is observed at {Dirac_h}{omega}{approx}0.27 (MeV) for the proton h{sub 11/2} band of {sup 149}Pr.

  1. Understanding the nanophotonic light-trapping structure of diatom frustule for enhanced solar energy conversion: a theoretical and experimental study

    NASA Astrophysics Data System (ADS)

    Chen, Xiangfan; Wang, Chen; Baker, Evan; Wang, Jane; Sun, Cheng

    2014-03-01

    Recent designs in nanophotonic light-trapping technologies offer promising potential to develop high-efficiency thin-film solar cell at dramatically reduced cost. However, the lack of a cost effective scalable nanomanufacturing technique remains the main road-block. In nature, diatoms exhibit high solar energy harvesting efficiency due to their frustules (i.e., hard porous cell wall made of silica) possessing remarkable hierarchical nano-features optimized for the photosynthetic process through millions of years evolution. To explore this unique light trapping effect, different species of diatoms (Coscinodiscus sp. and Coscinodiscus wailesii) are cultured and characterized by Scanning electron microscope (SEM). Rigorous Coupled Wave Analysis (RCWA) and Finite-difference time-domain (FDTD) method are employed to numerically study the nanophotonic light-trapping effect. The absorption efficiency is significantly enhanced over the spectrum region centered on 450nm and 700nm where the electric fields are found strongly confined within the active layer. The transmission and reflection spectra are also measured by optical spectroscopy and the experimental results are in good agreement with numerical simulations.

  2. Cosmic flows on 100 h-1 Mpc scales: standardized minimum variance bulk flow, shear and octupole moments

    NASA Astrophysics Data System (ADS)

    Feldman, Hume A.; Watkins, Richard; Hudson, Michael J.

    2010-10-01

    The low-order moments, such as the bulk flow and shear, of the large-scale peculiar velocity field are sensitive probes of the matter density fluctuations on very large scales. In practice, however, peculiar velocity surveys are usually sparse and noisy, which can lead to the aliasing of small-scale power into what is meant to be a probe of the largest scales. Previously, we developed an optimal `minimum variance' (MV) weighting scheme, designed to overcome this problem by minimizing the difference between the measured bulk flow (BF) and that which would be measured by an ideal survey. Here we extend this MV analysis to include the shear and octupole moments, which are designed to have almost no correlations between them so that they are virtually orthogonal. We apply this MV analysis to a compilation of all major peculiar velocity surveys, consisting of 4536 measurements. Our estimate of the BF on scales of ~100h-1Mpc has a magnitude of |v| = 416 +/- 78 kms -1 towards Galactic l = 282° +/- 11° and b = 6° +/- 6°. This result is in disagreement with Λ cold dark matter with Wilkinson Microwave Anisotropy Probe 5 (WMAP5) cosmological parameters at a high confidence level, but is in good agreement with our previous MV result without an orthogonality constraint, showing that the shear and octupole moments did not contaminate the previous BF measurement. The shear and octupole moments are consistent with WMAP5 power spectrum, although the measurement noise is larger for these moments than for the BF. The relatively low shear moments suggest that the sources responsible for the BF are at large distances.

  3. Octupole degree of freedom for the critical-point candidate nucleus {sup 152}Sm in a reflection-asymmetric relativistic mean-field approach

    SciTech Connect

    Zhang, W.; Li, Z. P.; Zhang, S. Q.; Meng, J.

    2010-03-15

    The potential energy surfaces of even-even {sup 146-156}Sm are investigated in the constrained reflection-asymmetric relativistic mean-field approach with parameter set PK1. It is shown that the critical-point candidate nucleus {sup 152}Sm marks the shape/phase transition not only from U(5) to SU(3) symmetry, but also from the octupole-deformed ground state in {sup 150}Sm to the quadrupole-deformed ground state in {sup 154}Sm. By including the octupole degree of freedom, an energy gap near the Fermi surface for single-particle levels in {sup 152}Sm with beta{sub 2}=0.14approx0.26 is found and the important role of the octupole deformation driving pair nu2f{sub 7/2} and nu1i{sub 13/2} is demonstrated.

  4. Interference between selected dipoles and octupoles in the optical second-harmonic generation from spherical gold nanoparticles.

    PubMed

    Butet, J; Bachelier, G; Russier-Antoine, I; Jonin, C; Benichou, E; Brevet, P-F

    2010-08-13

    Optical second-harmonic generation from gold nanoparticles is investigated both experimentally and theoretically. The contribution of octupoles is reported for the first time in the second-harmonic emission pattern, by using an harmonic polarization in the scattering plane. The experimental results presented here for particle sizes up to 100 nm are in excellent agreement with finite element method simulations involving the normal surface term only in the nonlinear polarization source. In addition, analytical calculations based on nonlinear Mie scattering theory clearly evidence the constructive and destructive interferences occurring between the dipolar and octupolar responses selected with this polarization configuration. PMID:20868074

  5. 34. mu. s isomer at high spin in sup 212 Fr: Evidence for a many-particle octupole coupled state

    SciTech Connect

    Byrne, A.P.; Dracoulis, G.D.; Schiffer, K.J.; Davidson, P.M.; Kibedi, T.; Fabricius, B.; Baxter, A.M.; Stuchbery, A.E. Australian National University, G.P.O. Box 4, Canberra, Australian Capital Territory )

    1990-07-01

    A very high spin isomeric state with {tau}{sub {ital m}}=34(3) {mu}s has been observed at an excitation energy of 8.5 MeV in {sup 212}Fr. The experimental evidence favors an {ital E}3 assignment, with a very large {ital E}3 transition strength, {ital B}({ital E}3)=100(12){times}10{sup 3} {ital e}{sup 2}fm{sup 6}, to one of the {gamma} rays de-exciting the isomer. The observed properties are in very good agreement with the characteristics of a 34{sup +} state predicted by the multiparticle octupole vibration model.

  6. Unitary Penning traps

    NASA Astrophysics Data System (ADS)

    Tan, Joseph; Brewer, Samuel; Guise, Nicholas

    2012-06-01

    We have constructed Penning traps in extremely compact forms, with unitary architectures that fully integrate NdFeB magnets (1.2 Tesla remnant magnetic field) within the electrode structure (occupying < 150 cm^3 assembled). A room-temperature apparatus has proven to be very useful in slowing and capturing ions extracted from an electron beam ion trap (EBIT).ootnotetextJ. N. Tan, S. M. Brewer, and N. D. Guise, to appear in Review of Scientific Instruments Here we present a two-magnet Penning trap designed to facilitate ion manipulation and optical experiments with stored ions. Some test results are presented. Experiments using this novel system are discussed in two presentations at this meeting.ootnotetextN.D. Guise, et al., ``Charge exchange and spectroscopy with isolated highly-charged ions,'' at this meeting.^,ootnotetextS. M. Brewer, et al., ``Observing forbidden radiative decay of highly-charged ions in a compact Penning trap,'' at this meeting. Unitary architecture can be particularly advantageous in small-instrument development (e.g., mass spectrometers) and in facilities or missions that have severe space constraints.

  7. Parity splitting and E1/E2 branching in the alternating parity band of {sup 240}Pu from two-center octupole wave functions using supersymmetric quantum mechanics

    SciTech Connect

    Jolos, R. V.; Brentano, P. von

    2011-08-15

    An interpretation is suggested of the recently published experimental data on the alternating parity bands in {sup 240}Pu. The interpretation is based on the assumption that the main role in the description of the properties of the alternating parity bands plays the octupole mode which preserves the axial symmetry. The mathematical technique of the supersymmetric quantum mechanics is used for the realization of the model with the two-center octupole wave functions. A good description of the parity splitting and of the ratio of the dipole and quadrupole transitional moments is obtained for the first two bands.

  8. Calculation of vibrational branching ratios and hyperfine structure of 24Mg19F and its suitability for laser cooling and magneto-optical trapping

    NASA Astrophysics Data System (ADS)

    Xu, Liang; Yin, Yanning; Wei, Bin; Xia, Yong; Yin, Jianping

    2016-01-01

    More recently, laser cooling of the diatomic radical magnesium monofluoride (24Mg19F ) is being experimentally preformed [Appl. Phys. Express 8, 092701 (2015), 10.7567/APEX.8.092701 and Opt. Express 22, 28645 (2014), 10.1364/OE.22.028645] and was also studied theoretically [Phys. Rev. A 91, 042511 (2015), 10.1103/PhysRevA.91.042511]. However, some important problems still remain unsolved, so, in our paper, we perform further theoretical study for the feasibility of laser cooling and trapping the 24Mg19F molecule. At first, the highly diagonal Franck-Condon factors of the main transitions are verified by the closed-form approximation, Morse approximation, and Rydberg-Klein-Rees inversion methods, respectively. Afterwards, we investigate the lower X 2Σ1/2 + hyperfine manifolds using a quantum effective Hamiltonian approach and obtain the zero-field hyperfine spectrum with an accuracy of less than 30 kHz ˜5 μ K compared with the experimental results, and then find out that one cooling beam and one or two repumping beams with their first-order sidebands are enough to implement an efficient laser slowing and cooling of 24Mg19F . Meanwhile, we also calculate the accurate hyperfine structure magnetic g factors of the rotational state (X 2Σ1/2 +,N =1 ) and briefly discuss the influence of the external fields on the hyperfine structure of 24Mg19F as well as its possibility of preparing three-dimensional magneto-optical trapping. Finally we give an explanation for the difference between the Stark and Zeeman effects from the perspective of parity and time reversal symmetry. Our study shows that, besides appropriate excitation wavelengths, the short lifetime for the first excited state A 2Π1 /2 , and lighter mass, the 24Mg19F radical could be a good candidate molecule amenable to laser cooling and magneto-optical trapping.

  9. Analysis of the fine structure of Sn11 +-Sn14 + ions by optical spectroscopy in an electron-beam ion trap

    NASA Astrophysics Data System (ADS)

    Windberger, A.; Torretti, F.; Borschevsky, A.; Ryabtsev, A.; Dobrodey, S.; Bekker, H.; Eliav, E.; Kaldor, U.; Ubachs, W.; Hoekstra, R.; Crespo López-Urrutia, J. R.; Versolato, O. O.

    2016-07-01

    We experimentally re-evaluate the fine structure of Sn11 +-Sn14 + ions. These ions are essential in bright extreme-ultraviolet (EUV) plasma-light sources for next-generation nanolithography, but their complex electronic structure is an open challenge for both theory and experiment. We combine optical spectroscopy of magnetic dipole M 1 transitions, in a wavelength range covering 260 to 780 nm, with charge-state selective ionization in an electron beam ion trap. Our measurements confirm the predictive power of ab initio calculations based on Fock space coupled cluster theory. We validate our line identification using semiempirical cowan calculations with adjustable wave-function parameters. Available Ritz combinations further strengthen our analysis. Comparison with previous work suggests that line identifications in the EUV need to be revisited.

  10. Structure elucidation of degradation products of the antibiotic amoxicillin with ion trap MS(n) and accurate mass determination by ESI TOF.

    PubMed

    Nägele, Edgar; Moritz, Ralf

    2005-10-01

    Today, it is necessary to identify relevant compounds appearing in discovery and development of new drug substances in the pharmaceutical industry. For that purpose, the measurement of accurate molecular mass and empirical formula calculation is very important for structure elucidation in addition to other available analytical methods. In this work, the identification and confirmation of degradation products in a finished dosage form of the antibiotic drug amoxicillin obtained under stress conditions will be demonstrated. Structure elucidation is performed utilizing liquid chromatography (LC) ion trap MS/MS and MS3 together with accurate mass measurement of the molecular ions and of the collision induced dissociation (CID) fragments by liquid chromatography electro spray ionization time-of-flight mass spectrometry (LC/ESI-TOF). PMID:16099170

  11. The structure and processes of the Siberian Traps sub-volcanic complex and consequences for end-Permian environmental crisis

    NASA Astrophysics Data System (ADS)

    Svensen, H.; Polozov, A. G.; Planke, S.

    2013-12-01

    The emplacement of the Siberian Traps Large igneous province is regarded as the key processes that initiated the end-Permian environmental crisis. The details of this link are however still under investigation. Among the suggestions are lava degassing of mantle- and crustal-derived gases, explosive lava and phreatomagmatic eruptions, and gas release from contact metamorphism related to the sub-volcanic sill complex. Whereas the lava pile is relatively well studied and investigated, the sub-volcanic sills, dikes, and contact aureoles are poorly studied and documented. We present borehole and field data of sills and contact aureoles from across the Siberian Traps, from Norilsk in the north to Bratsk in the south. The data have been compiled during three field campaigns in 2004, 2006, and 2010. The sill geometries and thicknesses varies considerably from kilometer-scale intrusive complexes to individual thin sills of a few tens of meters. In contrast to several other LIPs, sills are also emplaced within the extrusive pile. Thick sills (30-80 meters) occur in high abundance in the upper part of the sedimentary succession, affecting the coal-rich Tungusska Series sediments. Moreover, very thick sills (100-300 meters) are also emplaced within the vast Cambrian salt formations. We show that depending on the specific location within the province and the emplacement depth, the potential for degassing of both greenhouse gases (CH4, CO2), aerosols (SO2), and ozone destructive gases (CH3Cl, CH3Br) was in the 103 to 104 Gt range.

  12. Phosphorous trapped within buckminsterfullerene

    NASA Astrophysics Data System (ADS)

    Larsson, J. A.; Greer, J. C.; Harneit, W.; Weidinger, A.

    2002-05-01

    Under normal circumstances, when covalent molecules form, electrons are exchanged between atoms to form bonds. However, experiment and theoretical computations reveal exactly the opposite effect for the formation of group V elements nitrogen and phosphorous encapsulated within a buckminsterfullerene molecule. The C60 carbon cage remains intact upon encapsulation of the atom, whereas the electronic charge cloud of the N or P atom contracts. We have studied the chemical, spin, and thermodynamic properties of endohedral phosphorous (P@C60) and have compared our results with earlier findings for N@C60. From a combined experimental and theoretical vantage, we are able to elucidate a model for the interaction between the trapped group V atom and the fullerene cage. A picture emerges for the electronic structure of these complexes, whereby an atom is trapped within a fullerene, and interacts weakly with the molecular orbitals of the C60 cage.

  13. A Mg2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding.

    PubMed

    Schaak, Janell E; Yakhnin, Helen; Bevilacqua, Philip C; Babitzke, Paul

    2003-09-19

    Expression of the trpEDCFBA operon of Bacillus subtilis is regulated by transcription attenuation and translation control mechanisms. In each case, binding of the trp RNA-binding attenuation protein (TRAP) to the untranslated trp leader transcript mediates conformational changes in the RNA secondary structure. We examined the structure of the trp leader readthrough RNA in the absence of TRAP. Using chemical and enzymatic probes, the secondary structure of the trp leader RNA was found to be similar to predicted models. In addition, this RNA was found to adopt a Mg(2+)-dependent, long-range tertiary interaction under physiological monovalent salt conditions. Formation of this tertiary structure does not require significant changes in the preformed secondary structure. Enzymatic probing of the RNA in the presence of competitor DNA oligonucleotides that were designed to disrupt the predicted tertiary structure allowed identification of the interacting partners as the single-stranded portion of the purine-rich TRAP binding target and a large downstream pyrimidine-rich internal loop. UV cross-linking experiments utilizing 5'-p-azidophenacyl-containing transcripts revealed a Mg(2+)-dependent cross-link. Mapping of this cross-link provided evidence that the single-stranded segment of the TRAP binding site is in close proximity to the internal loop. Results from UV melting experiments with wild-type and mutant trp leader transcripts suggested a likely base-pairing register for the tertiary structure. Filter-binding studies demonstrated that the addition of Mg(2+) inhibits TRAP binding, which may be partially due to the effect of Mg(2+) on RNA tertiary structure formation. Results from expression studies using trpE'-'lacZ translational fusions and RNA-directed cell-free translation experiments suggest that the Mg(2+)-dependent tertiary structure inhibits TRAP's ability to regulate translation of trpE. PMID:12963367

  14. How varying pest and trap densities affect Tribolium castaneum (Coleoptera: Tenebrionidae) capture in pheromone traps

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The red flour beetle, Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae), is an important insect pest in food processing facilities. Pheromone trapping is frequently used to monitor red flour beetle populations in structures; however, the optimal trap density and the relationship between trap ...

  15. Search for Electric dipole moment (EDM) in laser cooled and trapped 225Ra atoms

    NASA Astrophysics Data System (ADS)

    Kalita, Mukut; Bailey, Kevin; Dietrich, Matthew; Green, John; Holt, Roy; Korsch, Wolfgang; Lu, Zheng-Tian; Lemke, Nathan; Mueller, Peter; O'Connor, Tom; Parker, Richard; Singh, Jaideep; Trimble, Will; Argonne National Laboratory Collaboration; University Of Chicago Collabration; University Of Kentucky Collaboration

    2014-05-01

    We are searching for an EDM of the diamagnetic 225Ra atom. 225Ra has nuclear spin I =1/2. Experimental sensitivity to its EDM is enhanced due to its heavy mass and the increased Schiff moment of its octupole deformed nucleus. Our experiment involves collecting laser cooled Ra atoms in a magneto-optical trap (MOT), transporting them 1 meter with a far off-resonant optical dipole trap (ODT) and then transferring the atoms to a second standing-wave ODT in our experimental chamber. We will report our recent experiences in polarizing and observing Larmor precession of 225Ra atoms in parallel electric and magnetic fields in a magnetically shielded region and progress towards a first measurement of the EDM of 225Ra. This work is supported by DOE, Office of Nuclear Physics, under contract No. DE-AC02-06CH11357 and contract No. DE-FG02-99ER41101.

  16. Detection and structural characterization of glutathione-trapped reactive metabolites using liquid chromatography-high-resolution mass spectrometry and mass defect filtering.

    PubMed

    Zhu, Mingshe; Ma, Li; Zhang, Haiying; Humphreys, W Griffith

    2007-11-01

    The present study was designed to apply the mass defect filter (MDF) approach to the screening and identification of reactive metabolites using high-resolution mass spectrometry. Glutathione (GSH)-trapped reactive metabolites of acetaminophen, diclofenac, carbamazepine, clozapine, p-cresol, 4-ethylphenol, and 3-methylindole in human liver microsomes (HLM) were analyzed by HPLC coupled with Orbitrap or Fourier transform ion cyclotron resonance mass spectrometry. Through the selective removal of all ions that fall outside of the GSH adduct MDF template windows, the processed full scan MS chromatograms displayed GSH adducts as major components with no or a few interference peaks. The accurate mass LC-MS data sets were also utilized for the elimination of false positive peaks, detection of stable oxidative metabolites with other MDF templates, and determination of metabolite molecular formulas. Compared to the neutral loss scan by a triple quadrupole instrument, the MDF approach was more sensitive and selective in screening for GSH-trapped reactive metabolites in HLM and rat bile and far more effective in detecting GSH adducts that do not afford the neutral loss of 129 Da as a significant fragmentation pathway. The GSH adduct screening capability of the MDF approach, together with the utility of accurate mass MS/MS information in structural elucidation, makes high-resolution LC-MS a useful tool for analyzing reactive metabolites. PMID:17918967

  17. Trapping Protoplanets at the Snowlines.

    NASA Astrophysics Data System (ADS)

    Baillié, K.; Charnoz, S.; Pantin, E.

    2015-12-01

    We follow the viscous evolution of protoplanetary disks by modeling self-consistently their dynamics, thermodynamics, photosphere geometry and composition (Baillié & Charnoz., 2014, ApJ and Baillié et al., 2015, A&A). Our hydrodynamical numerical code allows us to estimate the local gradients in temperature and density that drive the type I migration of planetary embryos. In particular, we identify irregular structures in the disk: shadowed regions that are not directly irradiated by the star, temperature plateaux at the sublimation temperature of the main dust components of the disk. These icelines appear to be related with planetary traps. Though planetary embryos can be trapped temporarily in some early transient traps, the other traps (more permanent) will allow protoplanets to survive and favor their growth by collisions between embryos at some specific orbits.

  18. Mini ion trap mass spectrometer

    DOEpatents

    Dietrich, D.D.; Keville, R.F.

    1995-09-19

    An ion trap is described which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10{sup 9} and commercial mass spectrometers requiring 10{sup 4} ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products. 10 figs.

  19. Mini ion trap mass spectrometer

    DOEpatents

    Dietrich, Daniel D.; Keville, Robert F.

    1995-01-01

    An ion trap which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10.sup.9 and commercial mass spectrometers requiring 10.sup.4 ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products.

  20. Acoustic trapping of active matter

    NASA Astrophysics Data System (ADS)

    Takatori, Sho C.; de Dier, Raf; Vermant, Jan; Brady, John F.

    2016-03-01

    Confinement of living microorganisms and self-propelled particles by an external trap provides a means of analysing the motion and behaviour of active systems. Developing a tweezer with a trapping radius large compared with the swimmers' size and run length has been an experimental challenge, as standard optical traps are too weak. Here we report the novel use of an acoustic tweezer to confine self-propelled particles in two dimensions over distances large compared with the swimmers' run length. We develop a near-harmonic trap to demonstrate the crossover from weak confinement, where the probability density is Boltzmann-like, to strong confinement, where the density is peaked along the perimeter. At high concentrations the swimmers crystallize into a close-packed structure, which subsequently `explodes' as a travelling wave when the tweezer is turned off. The swimmers' confined motion provides a measurement of the swim pressure, a unique mechanical pressure exerted by self-propelled bodies.

  1. Acoustic trapping of active matter.

    PubMed

    Takatori, Sho C; De Dier, Raf; Vermant, Jan; Brady, John F

    2016-01-01

    Confinement of living microorganisms and self-propelled particles by an external trap provides a means of analysing the motion and behaviour of active systems. Developing a tweezer with a trapping radius large compared with the swimmers' size and run length has been an experimental challenge, as standard optical traps are too weak. Here we report the novel use of an acoustic tweezer to confine self-propelled particles in two dimensions over distances large compared with the swimmers' run length. We develop a near-harmonic trap to demonstrate the crossover from weak confinement, where the probability density is Boltzmann-like, to strong confinement, where the density is peaked along the perimeter. At high concentrations the swimmers crystallize into a close-packed structure, which subsequently 'explodes' as a travelling wave when the tweezer is turned off. The swimmers' confined motion provides a measurement of the swim pressure, a unique mechanical pressure exerted by self-propelled bodies. PMID:26961816

  2. Hole trapping in thermal oxides grown under various oxidation conditions using avalanche injection in poly-silicon gate structures

    NASA Astrophysics Data System (ADS)

    Anand, K. V.; Cairns, B. R.; Strain, R. J.

    1985-03-01

    I/v data (where I is the dc current and v is the maximum value of the ac applied voltage across the device) was analyzed with respect to the theory and it was shown that the hole temperature not only depends on the substrate doping density and the electric field as measured by the Delta V subscript FB is not only a characteristic of the way that an oxide is grown and annealed, but it also depends on the quality of the substrate and its detailed thermal history. This substrate effect shows itself in the I/v characteristic of a particular device. If the dc current Idc was kept constant at a particular level (as was the case for our experiments), then the v value would represent the temperature of the hot carriers. Since the evidence suggests that the hot carriers generate trap levels, then any change in carrier temperature would reflect in Delta V subscript FB. These substrate related effects were found to be significant.

  3. Structural Distinction of Diacyl-, Alkylacyl, and Alk-1-Enylacyl Glycerophosphocholines as [M - 15]- Ions by Multiple-Stage Linear Ion-Trap Mass Spectrometry with Electrospray Ionization

    NASA Astrophysics Data System (ADS)

    Hsu, Fong-Fu; Lodhi, Irfan J.; Turk, John; Semenkovich, Clay F.

    2014-08-01

    We describe a linear ion-trap (LIT) multiple-stage (MSn) mass spectrometric approach towards differentiation of alkylacyl, alk-1-enylacyl- and diacyl-glycerophoscholines (PCs) as the [M - 15]- ions desorbed by electrospray ionization (ESI) in the negative-ion mode. The MS4 mass spectra of the [M - 15 - R2'CH = CO]- ions originated from the three PC subfamilies are readily distinguishable, resulting in unambiguous distinction of the lipid classes. This method is applied to two alkyl ether rich PC mixtures isolated from murine bone marrow neutrophils and kidney, respectively, to explore its utility in the characterization of complex PC mixture of biological origin, resulting in the realization of the detailed structures of the PC species, including various classes and many minor isobaric isomers.

  4. Structural elucidation of monoterpene oxidation products by ion trap fragmentation using on-line atmospheric pressure chemical ionisation mass spectrometry in the negative ion mode.

    PubMed

    Warscheid, B; Hoffmann, T

    2001-01-01

    Based on ion trap mass spectrometry, an on-line method is described which provides valuable information on the molecular composition of structurally complex organic aerosols. The investigated aerosols were generated from the gas-phase ozonolysis of various C(10)H(16)-terpenes (alpha-pinene, beta-pinene, 3-carene, sabinene, limonene), and directly introduced into the ion source of the mass spectrometer. Negative ion chemical ionisation at atmospheric pressure (APCI(-)) enabled the detection of multifunctional carboxylic acid products by combining inherent sensitivity and molecular weight information. Sequential low-energy collision-induced product ion fragmentation experiments (MS(n)) were performed in order to elucidate characteristic decomposition pathways of the compounds. Dicarboxylic acids, oxocarboxylic acids and hydroxyketocarboxylic acid products could be clearly distinguished by multistage on-line MS. Furthermore, sabinonic acid and two C(9)-ether compounds were tentatively identified for the first time by applying on-line APCI(-)-MS(n). PMID:11746892

  5. First observation of excited states in {sup 137}Te and the extent of octupole instability in the lanthanides

    SciTech Connect

    Urban, W.; Korgul, A.; Rzaca-Urban, T.; Schulz, N.; Bentaleb, M.; Lubkiewicz, E.; Durell, J. L.; Leddy, M. J.; Jones, M. A.; Phillips, W. R.

    2000-04-01

    Excited states in {sup 137}Te, populated in spontaneous fission of {sup 248}Cm, were studied by means of prompt-{gamma} spectroscopy, using the EUROGAM2 multidetector array. This is the first observation of excited states in {sup 137}Te. The yrast excitations of {sup 137}Te are due to the three valence neutrons, occupying the {nu}f{sub 7/2} and {nu}h{sub 9/2} orbitals, similarly as observed in its heavier N=85 isotones. Systematic comparison of excited levels in the N=85 isotones shows inconsistencies in spin and parity assignments in {sup 139}Xe and {sup 141}Ba nuclei. The new data for {sup 137}Te do not confirm earlier suggestions that octupole correlations increase in the N=85 isotones, close to the Z=50 closed shell. (c) 2000 The American Physical Society.

  6. Ion Trap Mass Spectrometry

    SciTech Connect

    Eiden, Greg C.

    2005-09-01

    This chapter describes research conducted in a few research groups in the 1990s in which RF quadrupole ion trap mass spectrometers were coupled to a powerful atomic ion source, the inductively coupled plasma used in conventional ICP-MS instruments. Major section titles for this chapter are: RF Quadrupole Ion Traps Features of RF Quadrupole Ion Trap Mass Spectrometers Selective Ion Trapping methods Inductively Coupled Plasma Source Ion Trap Mass Spectrometers

  7. gamma-ray spectroscopic study of calcium-48,49 and scandium-50 focusing on low lying octupole vibration excitations

    NASA Astrophysics Data System (ADS)

    McPherson, David M.

    An inverse kinematic proton scattering experiment was performed at the National Superconducting Cyclotron Laboratory (NSCL) using the GRETINA-S800 detector system in conjunction with the Ursinus College liquid hydrogen target. gamma-ray yields from the experiment were determined using geant4 simulations, generating state population cross sections. These cross sections were used to extract the delta_3 deformation length for the low-lying octupole vibration excitations in Ca-48,49 using the coupled channels analysis code fresco. Particle-core coupling in Ca-49 was studied in comparison to Ca-48 through determination of the neutron and proton deformation lengths. The total inverse kinematic proton scattering deformation lengths were evaluated for the low-lying octupole vibration excitations in Ca-48,49 to be delta_3(Ca-48, 3. -_1) = 1.0(2)fm,delta_3(Ca-49, 9/2. +_1) = 1.2(1)fm, delta_3 (Ca-49, 9/2. +_1) = 1.5(2)fm, delta_3(Ca-49,5/2. +_1) = 1.1(1)fm. Proton and neutron deformation lengths for two of theseoctupole states were also determined to be delta_p(Ca-48, 3. -_1) = 0.9(1)fm,delta_p (Ca-49, 9/2. +_1) = 1.0(1)fm, delta_n(Ca-48, 3. -_1) = 1.1(3)fm, anddelta_n(Ca-49, 9/2. +_1) = 1.3(3)fm. Additionally, the ratios of the neutronto proton transition matrix elements were also determined for these two states to be M_n/M_p(Ca-48, 3. -_1) = 1.7(6) and M_n/M_p(Ca-49, 9/2. +_1) = 2.0(5).Statistically, the derived values for these two nuclei are nearly identical.

  8. Three-Rod Linear Ion Traps

    NASA Technical Reports Server (NTRS)

    Janik, Gary R.; Prestage, John D.; Maleki, Lutfollah

    1993-01-01

    Three-parallel-rod electrode structures proposed for use in linear ion traps and possibly for electrostatic levitation of macroscopic particles. Provides wider viewing angle because they confine ions in regions outside rod-electrode structures.

  9. Crystal structure of CobK reveals strand-swapping between Rossmann-fold domains and molecular basis of the reduced precorrin product trap

    PubMed Central

    Gu, Shuang; Sushko, Oleksandr; Deery, Evelyne; Warren, Martin J.; Pickersgill, Richard W.

    2015-01-01

    CobK catalyzes the essential reduction of the precorrin ring in the cobalamin biosynthetic pathway. The crystal structure of CobK reveals that the enzyme, despite not having the signature sequence, comprises two Rossmann fold domains which bind coenzyme and substrate respectively. The two parallel β-sheets have swapped their last β-strands giving a novel sheet topology which is an interesting variation on the Rossmann-fold. The trapped ternary complex with coenzyme and product reveals five conserved basic residues that bind the carboxylates of the tetrapyrrole tightly anchoring the product. A loop, disordered in both the apoenzyme and holoenzyme structures, closes around the product further tightening binding. The structure is consistent with a mechanism involving protonation of C18 and pro-R hydride transfer from NADPH to C19 of precorrin-6A and reveals the interactions responsible for the specificity of CobK. The almost complete burial of the reduced precorrin product suggests a remarkable form of metabolite channeling where the next enzyme in the biosynthetic pathway triggers product release. PMID:26616290

  10. Crystal structure of CobK reveals strand-swapping between Rossmann-fold domains and molecular basis of the reduced precorrin product trap

    NASA Astrophysics Data System (ADS)

    Gu, Shuang; Sushko, Oleksandr; Deery, Evelyne; Warren, Martin J.; Pickersgill, Richard W.

    2015-11-01

    CobK catalyzes the essential reduction of the precorrin ring in the cobalamin biosynthetic pathway. The crystal structure of CobK reveals that the enzyme, despite not having the signature sequence, comprises two Rossmann fold domains which bind coenzyme and substrate respectively. The two parallel β-sheets have swapped their last β-strands giving a novel sheet topology which is an interesting variation on the Rossmann-fold. The trapped ternary complex with coenzyme and product reveals five conserved basic residues that bind the carboxylates of the tetrapyrrole tightly anchoring the product. A loop, disordered in both the apoenzyme and holoenzyme structures, closes around the product further tightening binding. The structure is consistent with a mechanism involving protonation of C18 and pro-R hydride transfer from NADPH to C19 of precorrin-6A and reveals the interactions responsible for the specificity of CobK. The almost complete burial of the reduced precorrin product suggests a remarkable form of metabolite channeling where the next enzyme in the biosynthetic pathway triggers product release.

  11. Trap States in Al2O3 InAlN/GaN Metal-Oxide-Semiconductor Structures by Frequency-Dependent Conductance Analysis

    NASA Astrophysics Data System (ADS)

    Zhang, Peng; Zhao, Sheng-Lei; Xue, Jun-Shuai; Zhang, Kai; Ma, Xiao-Hua; Zhang, Jin-Cheng; Hao, Yue

    2014-03-01

    We present a detailed analysis of the trap states in atomic layer deposition Al2O3/InAlN/GaN high electron mobility transistors grown by pulsed metal organic chemical vapor deposition. Trap densities, trap energies and time constants are determined by frequency-dependent conductance measurements. A high trap density of up to 1.6 × 1014 cm-2eV-1 is observed, which may be due to the lack of the cap layer causing the vulnerability to the subsequent high temperature annealing process.

  12. High Resolution Crystal Structures of Streptococcus pneumoniae Nicotinamidase with Trapped Intermediates Provide Insights into Catalytic Mechanism and Inhibition by Aldehydes∥,‡

    PubMed Central

    French, Jarrod B.; Cen, Yana; Sauve, Anthony A.; Ealick, Steven E.

    2010-01-01

    Nicotinamidases are salvage enzymes that convert nicotinamide to nicotinic acid. These enzymes are essential for the recycling of nicotinamide into NAD+ in most prokaryotes, most single cell and multicellular eukaryotes, but not in mammals. The significance of these enzymes for nicotinamide salvage and for NAD+ homeostasis has increased interest in nicotinamidases as possible antibiotic targets. Nicotinamidases are also regulators of intracellular nicotinamide concentrations, thereby regulating signaling of downstream NAD+ consuming enzymes, such as the NAD+-dependent deacetylases (sirtuins). Here, we report several high resolution crystal structures of the nicotinamidase from Streptococcus pneumoniae (SpNic) in unliganded and ligand-bound forms. The structure of the C136S mutant in complex with nicotinamide provides details about substrate binding while a trapped nicotinoyl-thioester complexed with SpNic reveals the structure of the proposed thioester reaction intermediate. Examination of the active site of SpNic reveals several important features including a metal ion that coordinates the substrate and the catalytically relevant water molecule, and an oxyanion hole which both orients the substrate and offsets the negative charge that builds up during catalysis. Structures of this enzyme with bound nicotinaldehyde inhibitors elucidate the mechanism of inhibition and provide further details about the catalytic mechanism. In addition, we provide a biochemical analysis of the identity and role of the metal ion that orients the ligand in the active site and activates the water molecule responsible for hydrolysis of the substrate. These data provide structural evidence for several proposed reaction intermediates and allow for a more complete understanding of the catalytic mechanism of this enzyme. PMID:20853856

  13. High-Resolution Crystal Structures of Streptococcus pneumoniae Nicotinamidase with Trapped Intermediates Provide Insights into the Catalytic Mechanism and Inhibition by Aldehydes

    SciTech Connect

    French, Jarrod B.; Cen, Yana; Sauve, Anthony A.; Ealick, Steven E.

    2010-11-11

    Nicotinamidases are salvage enzymes that convert nicotinamide to nicotinic acid. These enzymes are essential for the recycling of nicotinamide into NAD{sup +} in most prokaryotes and most single-cell and multicellular eukaryotes, but not in mammals. The significance of these enzymes for nicotinamide salvage and for NAD{sup +} homeostasis has stimulated interest in nicotinamidases as possible antibiotic targets. Nicotinamidases are also regulators of intracellular nicotinamide concentrations, thereby regulating signaling of downstream NAD{sup +}-consuming enzymes, such as the NAD{sup +}-dependent deacetylases (sirtuins). Here, we report several high-resolution crystal structures of the nicotinamidase from Streptococcus pneumoniae (SpNic) in unliganded and ligand-bound forms. The structure of the C136S mutant in complex with nicotinamide provides details about substrate binding, while a trapped nicotinoyl thioester in a complex with SpNic reveals the structure of the proposed thioester reaction intermediate. Examination of the active site of SpNic reveals several important features, including a metal ion that coordinates the substrate and the catalytically relevant water molecule and an oxyanion hole that both orients the substrate and offsets the negative charge that builds up during catalysis. Structures of this enzyme with bound nicotinaldehyde inhibitors elucidate the mechanism of inhibition and provide further details about the catalytic mechanism. In addition, we provide a biochemical analysis of the identity and role of the metal ion that orients the ligand in the active site and activates the water molecule responsible for hydrolysis of the substrate. These data provide structural evidence of several proposed reaction intermediates and allow for a more complete understanding of the catalytic mechanism of this enzyme.

  14. Controlled rotation of optically trapped microscopic particles.

    PubMed

    Paterson, L; MacDonald, M P; Arlt, J; Sibbett, W; Bryant, P E; Dholakia, K

    2001-05-01

    We demonstrate controlled rotation of optically trapped objects in a spiral interference pattern. This pattern is generated by interfering an annular shaped laser beam with a reference beam. Objects are trapped in the spiral arms of the pattern. Changing the optical path length causes this pattern, and thus the trapped objects, to rotate. Structures of silica microspheres, microscopic glass rods, and chromosomes are set into rotation at rates in excess of 5 hertz. This technique does not depend on intrinsic properties of the trapped particle and thus offers important applications in optical and biological micromachines. PMID:11340200

  15. The investigation of structure, chemical composition, hydrogen isotope trapping and release processes in deposition layers on surfaces exposed to DIII-D divertor plasma

    SciTech Connect

    Buzhinskij, O.I.; Opimach, I.V.; Barsuk, V.A.; Arkhipov, I.I.; West, W.P.; Wong, C.P.C.; Whyte, D.; Wampler, W.R.

    1998-05-01

    The exposure of ATG graphite sample to DIII-D divertor plasma was provided by the DiMES (Divertor Material Evaluation System) mechanism. The graphite sample arranged to receive the parallel heat flux on a small region of the surface was exposed to 600ms of outer strike point plasma. The sample was constructed to collect the eroded material directed downward into a trapping zone onto s Si disk collector. The average heat flux onto the graphite sample during the exposure was about 200W/cm{sup 2}, and the parallel heat flux was about 10 KW/cm{sup 2}. After the exposure the graphite sample and Si collector disk were analyzed using SEM, NRA, RBS, Auger spectroscopy. IR and Raman spectroscopy. The thermal desorption was studied also. The deposited coating on graphite sample is amorphous carbon layer. Just upstream of the high heat flux zone the redeposition layer has a globular structure. The deposition layer on Si disk is composed also from carbon but has a diamond-like structure. The areal density of C and D in the deposited layer on Si disk varied in poloidal and toroidal directions. The maximum D/C areal density ratio is about 0.23, maximum carbon density is about 3.8 {times} 10{sup 18}cm{sup {minus}2}, maximum D area density is about 3 {times} 10{sup 17}cm{sup 2}. The thermal desorption spectrum had a peak at 1,250K.

  16. Structural analysis of poly[(R,S)-3-hydroxybutyrate-co-L-lactide] copolyesters by electrospray ionization ion trap mass spectrometry.

    PubMed

    Adamus, Grazyna

    2007-01-01

    Two random copolyesters of poly[(R,S)-3-hydroxybutyrate-co-L-lactide] (P[(R,S)-3HB-co-LA]), prepared by equimolar reaction of (R,S)-beta-butyrolactone with L-lactic acid and (R,S)-3-hydroxybutyric acid with L-lactide, respectively, were characterized by electrospray ionization ion trap mass spectrometry (ESI-ITMS). Detailed studies of these copolyesters were performed by means of collision-induced dissociation (CID). The molecular architecture of individual copolyester macromolecules, including chemical structures of their end groups (hydroxyl and carboxylate), were established on the basis of their ESI mass spectra. The influence of an intermolecular transesterification reaction on the microstructure of the copolyester synthesized by equimolar reaction of (R,S)-3-hydroxybutyric acid with L-lactide was observed. The mass spectra provided information on sequence distribution and indicated that, despite the synthetic pathway applied, random P[(R,S)-3HB-co-LA] copolyesters were formed predominantly. The arrangements of comonomer structural units along the copolyester chains were evaluated by the respective ESI-MS/MS fragmentation pathways. PMID:17610241

  17. Structural Basis for Small G Protein Effector Interaction of Ras-related Protein 1 (Rap1) and Adaptor Protein Krev Interaction Trapped 1 (KRIT1)

    SciTech Connect

    Li, Xiaofeng; Zhang, Rong; Draheim, Kyle M.; Liu, Weizhi; Calderwood, David A.; Boggon, Titus J.

    2012-09-17

    Cerebral cavernous malformations (CCMs) affect 0.1-0.5% of the population resulting in leaky vasculature and severe neurological defects. KRIT1 (Krev interaction trapped-1) mutations associate with {approx}40% of familial CCMs. KRIT1 is an effector of Ras-related protein 1 (Rap1) GTPase. Rap1 relocalizes KRIT1 from microtubules to cell membranes to impact integrin activation, potentially important for CCM pathology. We report the 1.95 {angstrom} co-crystal structure of KRIT1 FERM domain in complex with Rap1. Rap1-KRIT1 interaction encompasses an extended surface, including Rap1 Switch I and II and KRIT1 FERM F1 and F2 lobes. Rap1 binds KRIT1-F1 lobe using a GTPase-ubiquitin-like fold interaction but binds KRIT1-F2 lobe by a novel interaction. Point mutagenesis confirms the interaction. High similarity between KRIT1-F2/F3 and talin is revealed. Additionally, the mechanism for FERM domains acting as GTPase effectors is suggested. Finally, structure-based alignment of each lobe suggests classification of FERM domains as ERM-like and TMFK-like (talin-myosin-FAK-KRIT-like) and that FERM lobes resemble domain 'modules.'

  18. A light-trapping strategy for nanocrystalline silicon thin-film solar cells using three-dimensionally assembled nanoparticle structures.

    PubMed

    Ha, Kyungyeon; Jang, Eunseok; Jang, Segeun; Lee, Jong-Kwon; Jang, Min Seok; Choi, Hoseop; Cho, Jun-Sik; Choi, Mansoo

    2016-02-01

    We report three-dimensionally assembled nanoparticle structures inducing multiple plasmon resonances for broadband light harvesting in nanocrystalline silicon (nc-Si:H) thin-film solar cells. A three-dimensional multiscale (3DM) assembly of nanoparticles generated using a multi-pin spark discharge method has been accomplished over a large area under atmospheric conditions via ion-assisted aerosol lithography. The multiscale features of the sophisticated 3DM structures exhibit surface plasmon resonances at multiple frequencies, which increase light scattering and absorption efficiency over a wide spectral range from 350-1100 nm. The multiple plasmon resonances, together with the antireflection functionality arising from the conformally deposited top surface of the 3D solar cell, lead to a 22% and an 11% improvement in power conversion efficiency of the nc-Si:H thin-film solar cells compared to flat cells and cells employing nanoparticle clusters, respectively. Finite-difference time-domain simulations were also carried out to confirm that the improved device performance mainly originates from the multiple plasmon resonances generated from three-dimensionally assembled nanoparticle structures. PMID:26751935

  19. A light-trapping strategy for nanocrystalline silicon thin-film solar cells using three-dimensionally assembled nanoparticle structures

    NASA Astrophysics Data System (ADS)

    Ha, Kyungyeon; Jang, Eunseok; Jang, Segeun; Lee, Jong-Kwon; Jang, Min Seok; Choi, Hoseop; Cho, Jun-Sik; Choi, Mansoo

    2016-02-01

    We report three-dimensionally assembled nanoparticle structures inducing multiple plasmon resonances for broadband light harvesting in nanocrystalline silicon (nc-Si:H) thin-film solar cells. A three-dimensional multiscale (3DM) assembly of nanoparticles generated using a multi-pin spark discharge method has been accomplished over a large area under atmospheric conditions via ion-assisted aerosol lithography. The multiscale features of the sophisticated 3DM structures exhibit surface plasmon resonances at multiple frequencies, which increase light scattering and absorption efficiency over a wide spectral range from 350-1100 nm. The multiple plasmon resonances, together with the antireflection functionality arising from the conformally deposited top surface of the 3D solar cell, lead to a 22% and an 11% improvement in power conversion efficiency of the nc-Si:H thin-film solar cells compared to flat cells and cells employing nanoparticle clusters, respectively. Finite-difference time-domain simulations were also carried out to confirm that the improved device performance mainly originates from the multiple plasmon resonances generated from three-dimensionally assembled nanoparticle structures.

  20. Structural Elucidation of Diglycosyl Diacylglycerol and Monoglycosyl Diacylglycerol from Streptococcus pneumoniae by Multiple-Stage Linear Ion-Trap Mass Spectrometry with Electrospray Ionization

    PubMed Central

    Tatituri, Raju Venkata Veera; Brenner, Michael B.; Turk, John; Hsu, Fong-Fu

    2013-01-01

    The cell wall of the pathogenic bacterium Streptococcus pneumoniae (S. pneumoniae) contains glucopyranosyl diacylglycerol (GlcDAG) and galactoglucopyranosyldiacylglycerol (GalGlcDAG). The specific GlcDAG consisting of vaccenic acid substituent at sn-2 was recently identified as another glycolipid antigen family recognized by invariant natural killer T cells (iNKT cells). Here, we describe a linear ion-trap (LIT) multiple-stage (MSn) mass spectrometric approach towards structural analysis of GalGlcDAG and GlcDAG. Structural information derived from MSn (n = 2,3) on the [M + Li]+ adduct ions desorbed by electrospray ionization (ESI) affords identification of the fatty acid substituents, assignment of the fatty acyl groups on the glycerol backbone, as well as the location of double bond along the fatty acyl chain. The identification of the fatty acyl groups and determination of their regio-specificity were confirmed by MSn (n = 2,3) on the [M + NH4]+ ions. We establish the structures of GalGlcDAG and GlcDAG isolated from S. pneumoniae, in which the major species consists of a 16:1- or 18:1-fatty acid substituent mainly at sn-2, and the double bond of the fatty acid is located at ω-7 (n-7). More than one isomers were found for each mass in the family. This mass spectrometric approach provides a simple method to achieve structure identification of this important lipid family that would be very difficult to define using the traditional method. PMID:22282097

  1. Bloodmeal host congregation and landscape structure impact the estimation of female mosquito (Diptera: Culicidae) abundance using dry ice-baited traps.

    PubMed

    Thiemann, Tara; Nelms, Brittany; Reisen, William K

    2011-05-01

    Vegetation patterns and the presence of large numbers of nesting herons and egrets significantly altered the number of host-seeking Culex tarsalis Coquillett (Diptera: Culicidae) collected at dry ice-baited traps. The numbers of females collected per trap night at traps along the ecotone of Eucalyptus stands with and without a heron colony were always greater or equal to numbers collected at traps within or under canopy. No Cx. tarsalis were collected within or under Eucaplytus canopy during the peak heron nesting season, even though these birds frequently were infected with West Nile virus and large number of engorged females could be collected at resting boxes. These data indicate a diversion of host-seeking females from traps to nesting birds reducing sampling efficiency. PMID:21661310

  2. Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome

    SciTech Connect

    Zhou, Jie; Lancaster, Laura; Trakhanov, Sergei; Noller, Harry F.

    2012-03-26

    The class II release factor RF3 is a GTPase related to elongation factor EF-G, which catalyzes release of class I release factors RF1 and RF2 from the ribosome after termination of protein synthesis. The 3.3 {angstrom} crystal structure of the RF3 {center_dot} GDPNP {center_dot} ribosome complex provides a high-resolution description of interactions and structural rearrangements that occur when binding of this translational GTPase induces large-scale rotational movements in the ribosome. RF3 induces a 7{sup o} rotation of the body and 14{sup o} rotation of the head of the 30S ribosomal subunit, and itself undergoes inter- and intradomain conformational rearrangements. We suggest that ordering of critical elements of switch loop I and the P loop, which help to form the GTPase catalytic site, are caused by interactions between the G domain of RF3 and the sarcin-ricin loop of 23S rRNA. The rotational movements in the ribosome induced by RF3, and its distinctly different binding orientation to the sarcin-ricin loop of 23S rRNA, raise interesting implications for the mechanism of action of EF-G in translocation.

  3. Sorption vacuum trap

    NASA Technical Reports Server (NTRS)

    Barrington, A. E.; Caruso, A. J.

    1970-01-01

    Modified sorption trap for use in high vacuum systems contains provisions for online regeneration of sorbent material. Trap is so constructed that it has a number of encapsulated resistance heaters and a valving and pumping device for removing gases from heated sorbing material. Excessive downtime is eliminated with this trap.

  4. Ion trap simulation tools.

    SciTech Connect

    Hamlet, Benjamin Roger

    2009-02-01

    Ion traps present a potential architecture for future quantum computers. These computers are of interest due to their increased power over classical computers stemming from the superposition of states and the resulting capability to simultaneously perform many computations. This paper describes a software application used to prepare and visualize simulations of trapping and maneuvering ions in ion traps.

  5. Structural basis for the antipolymer activity of Hb ζ2βs2 trapped in a tense conformation

    NASA Astrophysics Data System (ADS)

    Safo, Martin K.; Ko, Tzu-Ping; Schreiter, Eric R.; Eric Russell, J.

    2015-11-01

    The phenotypical severity of sickle cell disease (SCD) can be mitigated by modifying mutant hemoglobin S (Hb s, Hb α2β 2s) to contain embryonic ζ globin in place of adult α-globin subunits (Hb ζ2β2s). Crystallographical analyses of liganded Hb ζζ2β2s, though, demonstrate a tense (T-state) quaternary structure that paradoxically predicts its participation in--rather than its exclusion from--pathological deoxyHb S polymers. We resolved this structure-function conundrum by examining the effects of α → ζ exchange on the characteristics of specific amino acids that mediate sickle polymer assembly. Superposition analyses of the βs subunits of T-state deoxyHb α2β2s and T-state CO-liganded Hb ζ2β2s reveal significant displacements of both mutant βsVal6 and conserved β-chain contact residues, predicting weakening of corresponding polymer-stabilizing interactions. Similar comparisons of the α- and ζ-globin subunits implicate four amino acids that are either repositioned or undergo non-conservative substitution, abrogating critical polymer contacts. CO-Hb ζ2βs2 additionally exhibits a unique trimer-of-heterotetramers crystal packing that is sustained by novel intermolecular interactions involving the pathological βsVal6, contrasting sharply with the classical double-stranded packing of deoxyHb S. Finally, the unusually large buried solvent-accessible surface area for CO-Hb ζ2β2s suggests that it does not co-assemble with deoxyHb S in vivo. In sum, the antipolymer activities of Hb ζ203b2;2s appear to arise from both repositioning and replacement of specific α- and βs-chain residues, favoring an alternate T-state solution structure that is excluded from pathological deoxyHb S polymers. These data account for the antipolymer activity of Hb ζ2β2s, and recommend the utility of SCD therapeutics that capitalize on α-globin exchange strategies.

  6. First hyperpolarizabilities of 1,3,5-tricyanobenzene derivatives: origin of larger beta values for the octupoles than for the dipoles.

    PubMed

    Lee, Sang Hae; Park, Jo Ryoung; Jeong, Mi-Yun; Kim, Hwan Myung; Li, Shaojun; Song, Jongwon; Ham, Sihyun; Jeon, Seung-Joon; Cho, Bong Rae

    2006-01-16

    A series of donor-acceptor substituted stilbene and diphenylacetylene derivatives and their octupolar analogues have been synthesized and the linear and nonlinear optical properties (beta) studied by both experiments and theoretical calculation. The lambda(max) of the dipoles increases with the conjugation length and is always larger when the C=C bond is used, instead of the C[triple bond]C bond, as the conjugation bridge. Although the lambda(max) values of the octupoles show no clear trend, they are much larger than those of the dipoles. The beta(0) values of the dipoles increase with conjugation length and as the conjugation bridge is changed from the C[triple bond]C to C=C bond. This increase is accompanied by an increase in either lambda(max) or the oscillator strength. Similarly, the beta(0) values of the octupoles increase with the conjugation length and with a change in the donor in the order: NEt2 < N(i-amyl)Ph < NPh2. Moreover, beta(yyy)/beta(zzz) ratios are in the range of 1.6-3.9 and decrease with the conjugation length. Beta values calculated by the finite-field and sum-over-states methods are in good agreement with the experimental data. Also, there is a parallel relationship between the calculated beta values and bond length alternation (BLA). From these results, the origin of the larger beta values for octupoles than for dipoles is assessed. PMID:16323225

  7. Structure of the HIV-1 Full-Length Capsid Protein in a Conformationally Trapped Unassembled State Induced by Small-Molecule Binding

    SciTech Connect

    Du, Shoucheng; Betts, Laurie; Yang, Ruifeng; Shi, Haibin; Concel, Jason; Ahn, Jinwoo; Aiken, Christopher; Zhang, Peijun; Yeh, Joanne I.

    2012-11-26

    The capsid (CA) protein plays crucial roles in HIV infection and replication, essential to viral maturation. The absence of high-resolution structural data on unassembled CA hinders the development of antivirals effective in inhibiting assembly. Unlike enzymes that have targetable, functional substrate-binding sites, the CA does not have a known site that affects catalytic or other innate activity, which can be more readily targeted in drug development efforts. We report the crystal structure of the HIV-1 CA, revealing the domain organization in the context of the wild-type full-length (FL) unassembled CA. The FL CA adopts an antiparallel dimer configuration, exhibiting a domain organization sterically incompatible with capsid assembly. A small compound, generated in situ during crystallization, is bound tightly at a hinge site ('H site'), indicating that binding at this interdomain region stabilizes the ADP conformation. Electron microscopy studies on nascent crystals reveal both dimeric and hexameric lattices coexisting within a single condition, in agreement with the interconvertibility of oligomeric forms and supporting the feasibility of promoting assembly-incompetent dimeric states. Solution characterization in the presence of the H-site ligand shows predominantly unassembled dimeric CA, even under conditions that promote assembly. Our structure elucidation of the HIV-1 FL CA and characterization of a potential allosteric binding site provides three-dimensional views of an assembly-defective conformation, a state targeted in, and thus directly relevant to, inhibitor development. Based on our findings, we propose an unprecedented means of preventing CA assembly, by 'conformationally trapping' CA in assembly-incompetent conformational states induced by H-site binding.

  8. Seismic fault zone trapped noise

    NASA Astrophysics Data System (ADS)

    Hillers, G.; Campillo, M.; Ben-Zion, Y.; Roux, P.

    2014-07-01

    Systematic velocity contrasts across and within fault zones can lead to head and trapped waves that provide direct information on structural units that are important for many aspects of earthquake and fault mechanics. Here we construct trapped waves from the scattered seismic wavefield recorded by a fault zone array. The frequency-dependent interaction between the ambient wavefield and the fault zone environment is studied using properties of the noise correlation field. A critical frequency fc ≈ 0.5 Hz defines a threshold above which the in-fault scattered wavefield has increased isotropy and coherency compared to the ambient noise. The increased randomization of in-fault propagation directions produces a wavefield that is trapped in a waveguide/cavity-like structure associated with the low-velocity damage zone. Dense spatial sampling allows the resolution of a near-field focal spot, which emerges from the superposition of a collapsing, time reversed wavefront. The shape of the focal spot depends on local medium properties, and a focal spot-based fault normal distribution of wave speeds indicates a ˜50% velocity reduction consistent with estimates from a far-field travel time inversion. The arrival time pattern of a synthetic correlation field can be tuned to match properties of an observed pattern, providing a noise-based imaging tool that can complement analyses of trapped ballistic waves. The results can have wide applicability for investigating the internal properties of fault damage zones, because mechanisms controlling the emergence of trapped noise have less limitations compared to trapped ballistic waves.

  9. Analysis of neutral oligosaccharides for structural characterization by matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight mass spectrometry.

    PubMed

    Ojima, Noriyuki; Masuda, Katsuyoshi; Tanaka, Koichi; Nishimura, Osamu

    2005-03-01

    We have acquired multi-stage mass spectra (MSn) of four branched N-glycans derived from human serum IgG by matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight mass spectrometry (MALDI-QIT-TOF-MS) in order to demonstrate high sensitivity structural analysis. [M+H]+ and [M+Na]+ ions were detected in the positive mode. The detection limit of [M+Na]+ in MS/MS and MS3 measurements for structural analysis was found to be 100 fmol, better than that for [M+H]+. The [M+H]+ ions subsequently fragmented to produce predominantly a Y series of fragments, whereas [M+Na]+ ions fragmented to give a complex mixture of B and Y ions together with some cross-ring fragments. Three features of MALDI-QIT-CID fragmentation of [M+Na]+ were cleared by the analysis of MS/MS, MS3 and MS4 spectra: (1) the fragment ions resulting from the breaking of a bond are more easily generated than that from multi-bond dissociation; (2) the trimannosyl-chitobiose core is either hardly dissociated, easily ionized or it is easy to break a bond between N-acetylglucosamine and mannose; (3) the fragmentation by loss of only galactose from the non-reducing terminus is not observed. We could determine the existence ratios of candidates for each fragment ion in the MS/MS spectrum of [M+Na]+ by considering these features. These results indicate that MSn analysis of [M+Na]+ ions is more useful for the analysis of complicated oligosaccharide structures than MS/MS analysis of [M+H]+, owing to the higher sensitivity and enhanced structural information. Furthermore, two kinds of glycans, with differing branch structures, could be distinguished by comparing the relative fragment ion abundances in the MS3 spectrum of [M+Na]+. These analyses demonstrate that the MSn technology incorporated in MALDI-QIT-TOF-MS can facilitate the elucidation of structure of complex branched oligosaccharides. PMID:15712371

  10. Structurally diagnostic ion-molecule reactions and collisionally activated dissociation of 1,4-benzodiazepines in a quadrupole ion trap mass spectrometer.

    PubMed

    McCarley, T D; Brodbelt, J

    1993-09-01

    The ion-molecule reactions of various 1,4-benzodiazepines and dimethyl ether ions were studied with a quadrupole ion trap mass spectrometer. The methoxymethylene ions of dimethyl ether selectively react with 3-hydroxy-1,4-benzodiazepines (temazepam, oxazepam) to form (M+13)+ adducts by methylene substitution, and they react with 1,4-benzodiazepines that do not have hydroxyl substituents (diazepam, nordiazepam, nitrazepam) to form (M+15)+ adduct by a simple methyl cation transfer. These adducts are formed by elimination of methanol or formaldehyde, respectively, from (M+CH2OCH3)+ precursor ions. Ion-molecule reactions of model compounds with dimethyl ether ions suggest that the reactive site in the formation of (M+15)+ adducts is the imine functional group of the 1,4-benzodiazepines, while the reactive site for formation of (M+13)+ adducts involves a functional group interaction between the hydroxyl and carbonyl functional groups. Fragmentation induced by chemical ionization and collisionally activated dissociation provides further structural information for the differentiation of 1,4-benzodiazepines. Also, the gas-phase basicities of diazepam and temazepam have been estimated by bracketing techniques to be between 220.7 and 222.2 kcal/mol. PMID:8238931

  11. Evanescent field trapping of nanoparticles using nanostructured ultrathin optical fibers.

    PubMed

    Daly, Mark; Truong, Viet Giang; Chormaic, Síle Nic

    2016-06-27

    While conventional optical trapping techniques can trap objects with submicron dimensions, the underlying limits imposed by the diffraction of light generally restrict their use to larger or higher refractive index particles. As the index and diameter decrease, the trapping difficulty rapidly increases; hence, the power requirements for stable trapping become so large as to quickly denature the trapped objects in such diffraction-limited systems. Here, we present an evanescent field-based device capable of confining low index nanoscale particles using modest optical powers as low as 1.2 mW, with additional applications in the field of cold atom trapping. Our experiment uses a nanostructured optical micro-nanofiber to trap 200 nm, low index contrast, fluorescent particles within the structured region, thereby overcoming diffraction limitations. We analyze the trapping potential of this device both experimentally and theoretically, and show how strong optical traps are achieved with low input powers. PMID:27410600

  12. Optimal traps in graphene

    NASA Astrophysics Data System (ADS)

    Downing, C. A.; Pearce, A. R.; Churchill, R. J.; Portnoi, M. E.

    2015-10-01

    We transform the two-dimensional Dirac-Weyl equation, which governs the charge carriers in graphene, into a nonlinear first-order differential equation for scattering phase shift, using the so-called variable-phase method. This allows us to utilize the Levinson theorem, relating scattering phase shifts of a slow particle to its bound states, to find zero-energy bound states created electrostatically in realistic structures. These confined states are formed at critical potential strengths, which leads us to posit the use of "optimal traps" to combat the chiral tunneling found in graphene: this could be explored experimentally with an artificial network of point charges held above the graphene layer. We also discuss scattering on these states and find that the s states create a dominant peak in the scattering cross section as the energy tends towards the Dirac point energy, suggesting a dominant contribution to the resistivity.

  13. Multivariate Geostatistical Analysis of Uncertainty for the Hydrodynamic Model of a Geological Trap for Carbon Dioxide Storage. Case study: Multilayered Geological Structure Vest Valcele, ROMANIA

    NASA Astrophysics Data System (ADS)

    Scradeanu, D.; Pagnejer, M.

    2012-04-01

    The purpose of the works is to evaluate the uncertainty of the hydrodynamic model for a multilayered geological structure, a potential trap for carbon dioxide storage. The hydrodynamic model is based on a conceptual model of the multilayered hydrostructure with three components: 1) spatial model; 2) parametric model and 3) energy model. The necessary data to achieve the three components of the conceptual model are obtained from: 240 boreholes explored by geophysical logging and seismic investigation, for the first two components, and an experimental water injection test for the last one. The hydrodinamic model is a finite difference numerical model based on a 3D stratigraphic model with nine stratigraphic units (Badenian and Oligocene) and a 3D multiparameter model (porosity, permeability, hydraulic conductivity, storage coefficient, leakage etc.). The uncertainty of the two 3D models was evaluated using multivariate geostatistical tools: a)cross-semivariogram for structural analysis, especially the study of anisotropy and b)cokriging to reduce estimation variances in a specific situation where is a cross-correlation between a variable and one or more variables that are undersampled. It has been identified important differences between univariate and bivariate anisotropy. The minimised uncertainty of the parametric model (by cokriging) was transferred to hydrodynamic model. The uncertainty distribution of the pressures generated by the water injection test has been additional filtered by the sensitivity of the numerical model. The obtained relative errors of the pressure distribution in the hydrodynamic model are 15-20%. The scientific research was performed in the frame of the European FP7 project "A multiple space and time scale approach for the quantification of deep saline formation for CO2 storage(MUSTANG)".

  14. Characteristics and optimization of 4H-SiC MESFET with a novel p-type spacer layer incorporated with a field-plate structure based on improved trap models

    NASA Astrophysics Data System (ADS)

    Kun, Song; Changchun, Chai; Yintang, Yang; Hujun, Jia; Xianjun, Zhang; Bin, Chen

    2011-07-01

    A novel structure of 4H-SiC MESFETs is proposed that focuses on surface trap suppression. Characteristics of the device have been investigated based on physical models for material properties and improved trap models. By comparing with the performance of the well-utilized buried-gate incorporated with a field-plate (BG-FP) structure, it is shown that the proposed structure improves device properties in comprehensive aspects. A p-type spacer layer introduced in the channel layer suppresses the surface trap effect and reduces the gate-drain capacitance (Cgd) under a large drain voltage. A p-type spacer layer incorporated with a field-plate improves the electric field distribution on the gate edge while the spacer layer induces less Cgd than a conventional FP. For microwave applications, 4H-SiC MESFET for the proposed structure has a larger gate-lag ratio in the saturation region due to better surface trap isolation from the conductive channel. For high power applications, the proposed structure is able to endure higher operating voltage as well. The maximum saturation current density of 460 mA/mm is yielded. Also, the gate-lag ratio under a drain voltage of 20 V is close to 90%. In addition, 5% and 17.8% improvements in fT and fmax are obtained compared with a BG-FP MESFET in AC simulation, respectively. Parameters and dimensions of the proposed structure are optimized to make the best of the device for microwave applications and to provide a reference for device design.

  15. Ball-grid array architecture for microfabricated ion traps

    SciTech Connect

    Guise, Nicholas D. Fallek, Spencer D.; Stevens, Kelly E.; Brown, K. R.; Volin, Curtis; Harter, Alexa W.; Amini, Jason M.; Higashi, Robert E.; Lu, Son Thai; Chanhvongsak, Helen M.; Nguyen, Thi A.; Marcus, Matthew S.; Ohnstein, Thomas R.; Youngner, Daniel W.

    2015-05-07

    State-of-the-art microfabricated ion traps for quantum information research are approaching nearly one hundred control electrodes. We report here on the development and testing of a new architecture for microfabricated ion traps, built around ball-grid array (BGA) connections, that is suitable for increasingly complex trap designs. In the BGA trap, through-substrate vias bring electrical signals from the back side of the trap die to the surface trap structure on the top side. Gold-ball bump bonds connect the back side of the trap die to an interposer for signal routing from the carrier. Trench capacitors fabricated into the trap die replace area-intensive surface or edge capacitors. Wirebonds in the BGA architecture are moved to the interposer. These last two features allow the trap die to be reduced to only the area required to produce trapping fields. The smaller trap dimensions allow tight focusing of an addressing laser beam for fast single-qubit rotations. Performance of the BGA trap as characterized with {sup 40}Ca{sup +} ions is comparable to previous surface-electrode traps in terms of ion heating rate, mode frequency stability, and storage lifetime. We demonstrate two-qubit entanglement operations with {sup 171}Yb{sup +} ions in a second BGA trap.

  16. Dynamics Of Ions In A Radio-Frequency Quadrupole Trap

    NASA Technical Reports Server (NTRS)

    Prestage, John D.; Williams, Angelyn P.; Maleki, Lutfollah

    1994-01-01

    Report describes computer-simulation study of motions of various numbers of ions in Paul trap. Study part of continuing effort to understand motions of trapped charged particles (atoms, ions, molecules, or dust particles). Motions characterized in terms of heating by radio-frequency fields, formation of crystallike structures in cold clouds of trapped particles, and other phenomena important in operation of radio-frequency traps in frequency standards.

  17. Trap style influences wild pig behavior and trapping success

    USGS Publications Warehouse

    Williams, B.L.; Holtfreter, R.W.; Ditchkoff, S.S.; Grand, J.B.

    2011-01-01

    Despite the efforts of many natural resource professionals, wild pig (Sus scrofa) populations are expanding in many areas of the world. Although many creative techniques for controlling pig populations are being explored, trapping has been and still is themost commonly usedmethod of population control formany public and private land managers. We conducted an observational study to examine the efficiency of 2 frequently used trap styles: a small, portable box-style trap and a larger, semi-permanent, corral-style trap.We used game cameras to examine patterns of trap entry by wild pigs around each style of trap, and we conducted a trapping session to compare trapping success between trap styles. Adult female and juvenile wild pigs entered both styles of trap more readily than did adult males, and adult males seemed particularly averse to entering box traps. Less than 10% of adult male visits to box traps resulted in entries, easily the least percentage of any class at any style of trap. Adult females entered corral traps approximately 2.2 times more often per visit than box traps and re-entered corral traps >2 times more frequently. Juveniles entered and reentered both box and corral traps at similar rates. Overall (all-class) entry-per-visit rates at corral traps (0.71) were nearly double that of box traps (0.37). Subsequent trapping data supported these preliminary entry data; the capture rate for corral traps was >4 times that of box traps. Our data suggest that corral traps are temporally and economically superior to box traps with respect to efficiency; that is, corral traps effectively trap more pigs per trap night at a lower cost per pig than do box traps. ?? 2011 The Wildlife Society.

  18. Ecological and evolutionary traps

    USGS Publications Warehouse

    Schlaepfer, Martin A.; Runge, M.C.; Sherman, P.W.

    2002-01-01

    Organisms often rely on environmental cues to make behavioral and life-history decisions. However, in environments that have been altered suddenly by humans, formerly reliable cues might no longer be associated with adaptive outcomes. In such cases, organisms can become 'trapped' by their evolutionary responses to the cues and experience reduced survival or reproduction. Ecological traps occur when organisms make poor habitat choices based on cues that correlated formerly with habitat quality. Ecological traps are part of a broader phenomenon, evolutionary traps, involving a dissociation between cues that organisms use to make any behavioral or life-history decision and outcomes normally associated with that decision. A trap can lead to extinction if a population falls below a critical size threshold before adaptation to the novel environment occurs. Conservation and management protocols must be designed in light of, rather than in spite of, the behavioral mechanisms and evolutionary history of populations and species to avoid 'trapping' them.

  19. Microfabricated ion trap array

    DOEpatents

    Blain, Matthew G.; Fleming, James G.

    2006-12-26

    A microfabricated ion trap array, comprising a plurality of ion traps having an inner radius of order one micron, can be fabricated using surface micromachining techniques and materials known to the integrated circuits manufacturing and microelectromechanical systems industries. Micromachining methods enable batch fabrication, reduced manufacturing costs, dimensional and positional precision, and monolithic integration of massive arrays of ion traps with microscale ion generation and detection devices. Massive arraying enables the microscale ion traps to retain the resolution, sensitivity, and mass range advantages necessary for high chemical selectivity. The reduced electrode voltage enables integration of the microfabricated ion trap array with on-chip circuit-based rf operation and detection electronics (i.e., cell phone electronics). Therefore, the full performance advantages of the microfabricated ion trap array can be realized in truly field portable, handheld microanalysis systems.

  20. Structure and properties of the glandular surface in the digestive zone of the pitcher in the carnivorous plant Nepenthes ventrata and its role in insect trapping and retention.

    PubMed

    Gorb, Elena; Kastner, Victoria; Peressadko, Andrei; Arzt, Eduard; Gaume, Laurence; Rowe, Nick; Gorb, Stanislav

    2004-08-01

    Carnivorous plants of the genus Nepenthes grow in nutrient-poor habitats and have evolved specialised trapping organs, known as pitchers. These are composed of different surface zones serving the functions of attraction, capture and digestion of insects, which represent a main source of nitrogen. To investigate the role of the glandular digestive zone in the trapping mechanism of the pitcher, structural, mechanical and physico-chemical studies were applied to N. ventrata and combined with insect behavioural experiments. It was found that the glandular surface is microscopically rough since it is regularly structured with multicellular glands situated in epidermal depressions. The presence of downward-directed 'hoods' over the upper part of glands and sloped depressions in the proximal direction of the pitcher causes a marked anisotropy of the surface. The glandular zone surface is composed of relatively stiff material (Young's modulus, 637.19+/-213.44 kPa). It is not homogeneous, in terms of adhesive properties, and contains numerous areas without adhesion as well as adhesive areas differing greatly in tenacity values (range, 1.39-28.24 kPa). The surface is readily wettable with water (contact angle, 31.9-36.0 degrees C) and has a high surface free energy (56.84-61.93 mN m(-1)) with a relatively high polar component (33.09-52.70 mN m(-1)). To examine the effect of the glandular secretion on attachment systems of insects having hairy and smooth adhesive pads, forces generated on different surfaces by Calliphora vicina flies and Pyrrhocoris apterus bugs, respectively, were measured. Flies attached equally well to both fresh and air-dried glandular surfaces whereas bugs generated a significantly lower force on the fresh glandular surface compared with the air-dried one. It is assumed that the contribution of the glandular surface to insect retention, due to its effect on insect attachment, differs depending on insect weight and the type of insect attachment system

  1. Trapping atoms using nanoscale quantum vacuum forces

    PubMed Central

    Chang, D. E.; Sinha, K.; Taylor, J. M.; Kimble, H. J.

    2014-01-01

    Quantum vacuum forces dictate the interaction between individual atoms and dielectric surfaces at nanoscale distances. For example, their large strengths typically overwhelm externally applied forces, which makes it challenging to controllably interface cold atoms with nearby nanophotonic systems. Here we theoretically show that it is possible to tailor the vacuum forces themselves to provide strong trapping potentials. Our proposed trapping scheme takes advantage of the attractive ground-state potential and adiabatic dressing with an excited state whose potential is engineered to be resonantly enhanced and repulsive. This procedure yields a strong metastable trap, with the fraction of excited-state population scaling inversely with the quality factor of the resonance of the dielectric structure. We analyse realistic limitations to the trap lifetime and discuss possible applications that might emerge from the large trap depths and nanoscale confinement. PMID:25008119

  2. Truly trapped rainbow by utilizing nonreciprocal waveguides.

    PubMed

    Liu, Kexin; He, Sailing

    2016-01-01

    The concept of a "trapped rainbow" has generated considerable interest for optical data storage and processing. It aims to trap different frequency components of the wave packet at different positions permanently. However, all the previously proposed structures cannot truly achieve this effect, due to the difficulties in suppressing the reflection caused by strong intermodal coupling and distinguishing different frequency components simultaneously. In this article, we found a physical mechanism to achieve a truly "trapped rainbow" storage of electromagnetic wave. We utilize nonreciprocal waveguides under a tapered magnetic field to achieve this and such a trapping effect is stable even under fabrication disorders. We also observe hot spots and relatively long duration time of the trapped wave around critical positions through frequency domain and time domain simulations. The physical mechanism we found has a variety of potential applications ranging from wave harvesting and storage to nonlinearity enhancement. PMID:27453496

  3. Truly trapped rainbow by utilizing nonreciprocal waveguides

    NASA Astrophysics Data System (ADS)

    Liu, Kexin; He, Sailing

    2016-07-01

    The concept of a “trapped rainbow” has generated considerable interest for optical data storage and processing. It aims to trap different frequency components of the wave packet at different positions permanently. However, all the previously proposed structures cannot truly achieve this effect, due to the difficulties in suppressing the reflection caused by strong intermodal coupling and distinguishing different frequency components simultaneously. In this article, we found a physical mechanism to achieve a truly “trapped rainbow” storage of electromagnetic wave. We utilize nonreciprocal waveguides under a tapered magnetic field to achieve this and such a trapping effect is stable even under fabrication disorders. We also observe hot spots and relatively long duration time of the trapped wave around critical positions through frequency domain and time domain simulations. The physical mechanism we found has a variety of potential applications ranging from wave harvesting and storage to nonlinearity enhancement.

  4. Truly trapped rainbow by utilizing nonreciprocal waveguides

    PubMed Central

    Liu, Kexin; He, Sailing

    2016-01-01

    The concept of a “trapped rainbow” has generated considerable interest for optical data storage and processing. It aims to trap different frequency components of the wave packet at different positions permanently. However, all the previously proposed structures cannot truly achieve this effect, due to the difficulties in suppressing the reflection caused by strong intermodal coupling and distinguishing different frequency components simultaneously. In this article, we found a physical mechanism to achieve a truly “trapped rainbow” storage of electromagnetic wave. We utilize nonreciprocal waveguides under a tapered magnetic field to achieve this and such a trapping effect is stable even under fabrication disorders. We also observe hot spots and relatively long duration time of the trapped wave around critical positions through frequency domain and time domain simulations. The physical mechanism we found has a variety of potential applications ranging from wave harvesting and storage to nonlinearity enhancement. PMID:27453496

  5. Neutral atom traps.

    SciTech Connect

    Pack, Michael Vern

    2008-12-01

    This report describes progress in designing a neutral atom trap capable of trapping sub millikelvin atom in a magnetic trap and shuttling the atoms across the atom chip from a collection area to an optical cavity. The numerical simulation and atom chip design are discussed. Also, discussed are preliminary calculations of quantum noise sources in Kerr nonlinear optics measurements based on electromagnetically induced transparency. These types of measurements may be important for quantum nondemolition measurements at the few photon limit.

  6. Structure of the beta 2 homodimer of bacterial luciferase from Vibrio harveyi: X-ray analysis of a kinetic protein folding trap.

    PubMed Central

    Thoden, J. B.; Holden, H. M.; Fisher, A. J.; Sinclair, J. F.; Wesenberg, G.; Baldwin, T. O.; Rayment, I.

    1997-01-01

    Luciferase, as isolated from Vibrio harveyi, is an alpha beta heterodimer. When allowed to fold in the absence of the alpha subunit, either in vitro or in vivo, the beta subunit of enzyme will form a kinetically stable homodimer that does not unfold even after prolonged incubation in 5 M urea at pH 7.0 and 18 degrees C. This form of the beta subunit, arising via kinetic partitioning on the folding pathway, appears to constitute a kinetically trapped alternative to the heterodimeric enzyme (Sinclair JF, Ziegler MM, Baldwin TO. 1994. Kinetic partitioning during protein folding yields multiple native states. Nature Struct Biol 1: 320-326). Here we describe the X-ray crystal structure of the beta 2 homodimer of luciferase from V. harveyi determined and refined at 1.95 A resolution. Crystals employed in the investigational belonged to the orthorhombic space group P2(1)2(1)2(1) with unit cell dimensions of a = 58.8 A, b = 62.0 A, and c = 218.2 A and contained one dimer per asymmetric unit. Like that observed in the functional luciferase alpha beta heterodimer, the major tertiary structural motif of each beta subunit consists of an (alpha/beta)8 barrel (Fisher AJ, Raushel FM, Baldwin TO, Rayment I. 1995. Three-dimensional structure of bacterial luciferase from Vibrio harveyi at 2.4 A resolution. Biochemistry 34: 6581-6586). The root-mean-square deviation of the alpha-carbon coordinates between the beta subunits of the hetero- and homodimers is 0.7 A. This high resolution X-ray analysis demonstrated that "domain" or "loop" swapping has not occurred upon formation of the beta 2 homodimer and thus the stability of the beta 2 species to denaturation cannot be explained in such simple terms. In fact, the subunit:subunit interfaces observed in both the beta 2 homodimer and alpha beta heterodimer are remarkably similar in hydrogen-bonding patterns and buried surface areas. PMID:9007973

  7. Insights into the Mechanism of Bovine CD38/NAD+Glycohydrolase from the X-Ray Structures of Its Michaelis Complex and Covalently-Trapped Intermediates

    PubMed Central

    Egea, Pascal F.; Muller-Steffner, Hélène; Kuhn, Isabelle; Cakir-Kiefer, Céline; Oppenheimer, Norman J.; Stroud, Robert M.; Kellenberger, Esther; Schuber, Francis

    2012-01-01

    Bovine CD38/NAD+glycohydrolase (bCD38) catalyses the hydrolysis of NAD+ into nicotinamide and ADP-ribose and the formation of cyclic ADP-ribose (cADPR). We solved the crystal structures of the mono N-glycosylated forms of the ecto-domain of bCD38 or the catalytic residue mutant Glu218Gln in their apo state or bound to aFNAD or rFNAD, two 2′-fluorinated analogs of NAD+. Both compounds behave as mechanism-based inhibitors, allowing the trapping of a reaction intermediate covalently linked to Glu218. Compared to the non-covalent (Michaelis) complex, the ligands adopt a more folded conformation in the covalent complexes. Altogether these crystallographic snapshots along the reaction pathway reveal the drastic conformational rearrangements undergone by the ligand during catalysis with the repositioning of its adenine ring from a solvent-exposed position stacked against Trp168 to a more buried position stacked against Trp181. This adenine flipping between conserved tryptophans is a prerequisite for the proper positioning of the N1 of the adenine ring to perform the nucleophilic attack on the C1′ of the ribofuranoside ring ultimately yielding cADPR. In all structures, however, the adenine ring adopts the most thermodynamically favorable anti conformation, explaining why cyclization, which requires a syn conformation, remains a rare alternate event in the reactions catalyzed by bCD38 (cADPR represents only 1% of the reaction products). In the Michaelis complex, the substrate is bound in a constrained conformation; the enzyme uses this ground-state destabilization, in addition to a hydrophobic environment and desolvation of the nicotinamide-ribosyl bond, to destabilize the scissile bond leading to the formation of a ribooxocarbenium ion intermediate. The Glu218 side chain stabilizes this reaction intermediate and plays another important role during catalysis by polarizing the 2′-OH of the substrate NAD+. Based on our structural analysis and data on active site mutants

  8. Structural Basis for the Disruption of the Cerebral Cavernous Malformations 2 (CCM2) Interaction with Krev Interaction Trapped 1 (KRIT1) by Disease-associated Mutations*

    PubMed Central

    Fisher, Oriana S.; Liu, Weizhi; Zhang, Rong; Stiegler, Amy L.; Ghedia, Sondhya; Weber, James L.; Boggon, Titus J.

    2015-01-01

    Familial cerebral cavernous malformations (CCMs) are predominantly neurovascular lesions and are associated with mutations within the KRIT1, CCM2, and PDCD10 genes. The protein products of KRIT1 and CCM2 (Krev interaction trapped 1 (KRIT1) and cerebral cavernous malformations 2 (CCM2), respectively) directly interact with each other. Disease-associated mutations in KRIT1 and CCM2 mostly result in loss of their protein products, although rare missense point mutations can also occur. From gene sequencing of patients known or suspected to have one or more CCMs, we discover a series of missense point mutations in KRIT1 and CCM2 that result in missense mutations in the CCM2 and KRIT1 proteins. To place these mutations in the context of the molecular level interactions of CCM2 and KRIT1, we map the interaction of KRIT1 and CCM2 and find that the CCM2 phosphotyrosine binding (PTB) domain displays a preference toward the third of the three KRIT1 NPX(Y/F) motifs. We determine the 2.75 Å co-crystal structure of the CCM2 PTB domain with a peptide corresponding to KRIT1NPX(Y/F)3, revealing a Dab-like PTB fold for CCM2 and its interaction with KRIT1NPX(Y/F)3. We find that several disease-associated missense mutations in CCM2 have the potential to interrupt the KRIT1-CCM2 interaction by destabilizing the CCM2 PTB domain and that a KRIT1 mutation also disrupts this interaction. We therefore provide new insights into the architecture of CCM2 and how the CCM complex is disrupted in CCM disease. PMID:25525273

  9. Rainbow Trapping in Hyperbolic Metamaterial Waveguide

    PubMed Central

    Hu, Haifeng; Ji, Dengxin; Zeng, Xie; Liu, Kai; Gan, Qiaoqiang

    2013-01-01

    The recent reported trapped “rainbow” storage of light using metamaterials and plasmonic graded surface gratings has generated considerable interest for on-chip slow light. The potential for controlling the velocity of broadband light in guided photonic structures opens up tremendous opportunities to manipulate light for optical modulation, switching, communication and light-matter interactions. However, previously reported designs for rainbow trapping are generally constrained by inherent difficulties resulting in the limited experimental realization of this intriguing effect. Here we propose a hyperbolic metamaterial structure to realize a highly efficient rainbow trapping effect, which, importantly, is not limited by those severe theoretical constraints required in previously reported insulator-negative-index-insulator, insulator-metal-insulator and metal-insulator-metal waveguide tapers, and therefore representing a significant promise to realize the rainbow trapping structure practically. PMID:23409240

  10. Alanine Scanning Mutagenesis of Anti-TRAP (AT) Reveals Residues Involved in Binding to TRAP

    PubMed Central

    Chen, Yanling; Gollnick, Paul

    2008-01-01

    SUMMARY The trp RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic (trp) genes in response to changes in intracellular levels of free L-tryptophan in many gram positive bacteria. When activated by binding tryptophan, TRAP binds to the mRNAs of several genes involved in tryptophan metabolism, and down-regulates transcription or translation of these genes. Anti-TRAP (AT) is an antagonist of TRAP that binds to tryptophan-activated TRAP and prevents it from binding to its RNA targets, and thereby up-regulates trp gene expression. The crystal structure shows that AT is a cone-shaped trimer (AT3) with the N-terminal residues of the three subunits assembled at the apex of the cone and that these trimers can further assemble into a dodecameric (AT12) structure. Using alanine-scanning mutagenesis we found four residues, all located on the “top” region of AT3, which are essential for binding to TRAP. Fluorescent labeling experiments further suggest that the top region of AT is in close juxtaposition to TRAP in the AT-TRAP complex. In vivo studies confirmed the importance of these residues on the top of AT in regulating TRAP mediated gene regulation. PMID:18334255

  11. Investigations of the ground-state hyperfine atomic structure and beta decay measurement prospects of {sup 21}Na with improved laser trapping techniques

    SciTech Connect

    Rowe, Mary A.

    1999-05-24

    This thesis describes an experiment in which a neutral atom laser trap loaded with radioactive {sup 21}Na was improved and then used for measurements. The sodium isotope (half-life=22 sec) is produced on line at the 88in cyclotron at Lawrence Berkeley National Laboratory. The author developed an effective magnesium oxide target system which is crucial to deliver a substantive beam of {sup 21}Na to the experiment. Efficient manipulation of the {sup 21}Na beam with lasers allowed 30,000 atoms to be contained in a magneto-optical trap. Using the cold trapped atoms, the author measured to high precision the hyperfine splitting of the atomic ground state of {sup 21}Na. She measured the 3S{sub 1/2}(F=1,m=0)-3S{sub 1/2}(F=2,m=0) atomic level splitting of {sup 21}Na to be 1,906,471,870{+-}200 Hz. Additionally, she achieved initial detection of beta decay from the trap and evaluated the prospects of precision beta decay correlation studies with trapped atoms.

  12. Evaluating the metapopulation consequences of ecological traps

    PubMed Central

    Hale, Robin; Treml, Eric A.; Swearer, Stephen E.

    2015-01-01

    Ecological traps occur when environmental changes cause maladaptive habitat selection. Despite their relevance to metapopulations, ecological traps have been studied predominantly at local scales. How these local impacts scale up to affect the dynamics of spatially structured metapopulations in heterogeneous landscapes remains unexplored. We propose that assessing the metapopulation consequences of traps depends on a variety of factors that can be grouped into four categories: the probability of encounter, the likelihood of selection, the fitness costs of selection and species-specific vulnerability to these costs. We evaluate six hypotheses using a network-based metapopulation model to explore the relative importance of factors across these categories within a spatial context. Our model suggests (i) traps are most severe when they represent a large proportion of habitats, severely reduce fitness and are highly attractive, and (ii) species with high intrinsic fitness will be most susceptible. We provide the first evidence that (iii) traps may be beneficial for metapopulations in rare instances, and (iv) preferences for natal-like habitats can magnify the effects of traps. Our study provides important insight into the effects of traps at landscape scales, and highlights the need to explicitly consider spatial context to better understand and manage traps within metapopulations. PMID:25761712

  13. Acoustic trapping of active matter

    PubMed Central

    Takatori, Sho C.; De Dier, Raf; Vermant, Jan; Brady, John F.

    2016-01-01

    Confinement of living microorganisms and self-propelled particles by an external trap provides a means of analysing the motion and behaviour of active systems. Developing a tweezer with a trapping radius large compared with the swimmers' size and run length has been an experimental challenge, as standard optical traps are too weak. Here we report the novel use of an acoustic tweezer to confine self-propelled particles in two dimensions over distances large compared with the swimmers' run length. We develop a near-harmonic trap to demonstrate the crossover from weak confinement, where the probability density is Boltzmann-like, to strong confinement, where the density is peaked along the perimeter. At high concentrations the swimmers crystallize into a close-packed structure, which subsequently ‘explodes' as a travelling wave when the tweezer is turned off. The swimmers' confined motion provides a measurement of the swim pressure, a unique mechanical pressure exerted by self-propelled bodies. PMID:26961816

  14. Optical trapping in liquid crystals

    NASA Astrophysics Data System (ADS)

    Simoni, F.; Lucchetti, L.; Criante, L.; Bracalente, F.; Aieta, F.

    2010-08-01

    Optical trapping and manipulation of micrometric silica particles dispersed in a nematic liquid crystal is reported. Several kind of samples are considered: homeotropic and planar undoped cells and homeotropic and planar cells doped by a small amount of the azo-dye Methyl-Red. The incident light intensity is over the threshold for optical reorientation of the molecular director. The refractive index of the dispersed particles is lower than the ones of the liquid crystal therefore the usual conditions for laser trapping and manipulation are not fulfilled. Nevertheless optical trapping is possible and is closely related to the optical nonlinearity of the hosting liquid crystal1. Trapping in doped and undoped cells are compared and it is shown that in the first case intensity lower by more than one order of magnitude is required as compared to the one needed in undoped samples. The effect is faster and the structural forces are of longer range. The formation of bubble-gum like defects in doped samples under certain experimental conditions is also reported and discussed.

  15. A method for trap factor calculation and its effect

    SciTech Connect

    Xinguo, Z. )

    1992-01-01

    The accumulations and distributions of oil and gas in fault-block oil field are greatly controlled by various faults. Such oil field is characterized by complicated structure, multiple reservoirs, complex contact between oil and water, and big oil abundance difference among the reservoirs. The properties bring many troubles to the exploration and development of such oil and gas fields. There is no uniform statistical calculation standard that is special for multitudinous fault block traps. Common trap factor calculation methods are suitable for anticlinal trap, but they are not applicable to complicated fault block traps. In this paper, a new factor calculation method for fault traps in which there are quite thick reservoir and overlying formation is presented on the basis of fault trap property and interrelations among the factors which influence trap characteristics. Quite accurate closing areas of oil traps have been obtained by using the method in Dongpu seg.

  16. Liquid metal cold trap

    DOEpatents

    Hundal, Rolv

    1976-01-01

    A cold trap assembly for removing impurities from a liquid metal being provided with a hole between the incoming impure liquid metal and purified outgoing liquid metal which acts as a continuous bleed means and thus prevents the accumulation of cover gases within the cold trap assembly.

  17. Deuterium trapping in tungsten

    NASA Astrophysics Data System (ADS)

    Poon, Michael

    Tungsten is one of the primary material candidates being investigated for use in the first-wall of a magnetic confinement fusion reactor. An ion accelerator was used to simulate the type of ion interaction that may occur at a plasma-facing material. Thermal desorption spectroscopy (TDS) was the primary tool used to analyze the effects of the irradiation. Secondary ion mass spectroscopy (SIMS) was used to determine the distribution of trapped D in the tungsten specimen. The tritium migration analysis program (TMAP) was used to simulate thermal desorption profiles from the D depth distributions. Fitting of the simulated thermal desorption profiles with the measured TDS results provided values of the D trap energies. Deuterium trapping in single crystal tungsten was studied as a function of the incident ion fluence, ion flux, irradiation temperature, irradiation history, and surface impurity levels during irradiation. The results show that deuterium was trapped at vacancies and voids. Two deuterium atoms could be trapped at a tungsten vacancy, with trapping energies of 1.4 eV and 1.2 eV for the first and second D atoms, respectively. In a tungsten void, D is trapped as atoms adsorbed on the inner walls of the void with a trap energy of 2.1 eV, or as D2 molecules inside the void with a trap energy of 1.2 eV. Deuterium trapping in polycrystalline tungsten was also studied as a function of the incident fluence, irradiation temperature, and irradiation history. Deuterium trapping in polycrystalline tungsten also occurs primarily at vacancies and voids with the same trap energies as in single crystal tungsten; however, the presence of grain boundaries promotes the formation of large surface blisters with high fluence irradiations at 500 K. In general, D trapping is greater in polycrystalline tungsten than in single crystal tungsten. To simulate mixed materials comprising of carbon (C) and tungsten, tungsten specimens were pre-irradiated with carbon ions prior to D

  18. Nonlinear integrable ion traps

    SciTech Connect

    Nagaitsev, S.; Danilov, V.; /SNS Project, Oak Ridge

    2011-10-01

    Quadrupole ion traps can be transformed into nonlinear traps with integrable motion by adding special electrostatic potentials. This can be done with both stationary potentials (electrostatic plus a uniform magnetic field) and with time-dependent electric potentials. These potentials are chosen such that the single particle Hamilton-Jacobi equations of motion are separable in some coordinate systems. The electrostatic potentials have several free adjustable parameters allowing for a quadrupole trap to be transformed into, for example, a double-well or a toroidal-well system. The particle motion remains regular, non-chaotic, integrable in quadratures, and stable for a wide range of parameters. We present two examples of how to realize such a system in case of a time-independent (the Penning trap) as well as a time-dependent (the Paul trap) configuration.

  19. Optically programmable excitonic traps

    PubMed Central

    Alloing, Mathieu; Lemaître, Aristide; Galopin, Elisabeth; Dubin, François

    2013-01-01

    With atomic systems, optically programmed trapping potentials have led to remarkable progress in quantum optics and quantum information science. Programmable trapping potentials could have a similar impact on studies of semiconductor quasi-particles, particularly excitons. However, engineering such potentials inside a semiconductor heterostructure remains an outstanding challenge and optical techniques have not yet achieved a high degree of control. Here, we synthesize optically programmable trapping potentials for indirect excitons of bilayer heterostructures. Our approach relies on the injection and spatial patterning of charges trapped in a field-effect device. We thereby imprint in-situ and on-demand electrostatic traps into which we optically inject cold and dense ensembles of excitons. This technique creates new opportunities to improve state-of-the-art technologies for the study of collective quantum behavior of excitons and also for the functionalisation of emerging exciton-based opto-electronic circuits. PMID:23546532

  20. Optical trapping and binding

    NASA Astrophysics Data System (ADS)

    Bowman, Richard W.; Padgett, Miles J.

    2013-02-01

    The phenomenon of light's momentum was first observed in the laboratory at the beginning of the twentieth century, and its potential for manipulating microscopic particles was demonstrated by Ashkin some 70 years later. Since that initial demonstration, and the seminal 1986 paper where a single-beam gradient-force trap was realized, optical trapping has been exploited as both a rich example of physical phenomena and a powerful tool for sensitive measurement. This review outlines the underlying theory of optical traps, and explores many of the physical observations that have been made in such systems. These phenomena include ‘optical binding’, where trapped objects interact with one another through the trapping light field. We also discuss a number of the applications of ‘optical tweezers’ across the physical and life sciences, as well as covering some of the issues involved in constructing and using such a tool.

  1. The complex mixed Wentzel–Kramers–Brillouin-full-wave approach and its application to the two dimensional mode structure analysis of ion temperature gradient/collisionless trapped electron mode drift waves

    SciTech Connect

    Lu, Z. X.

    2015-05-15

    The complex mixed Wentzel–Kramers–Brillouin (WKB)-full-wave approach is applied to the 2D mode structure analysis of ion temperature gradient/collisionless trapped electron mode drift waves in tokamak plasmas. The parallel mode structure is calculated with the full-wave approach, while the radial envelope is calculated with the complex WKB method. The tilting of the global mode structure along radius is demonstrated analytically. The effects of the phase and amplitude variation of the radial envelope on the parallel mode structure are included in terms of a complex radial wave vector in the parallel mode equation. It is shown that the radial equilibrium non-uniformity leads to the asymmetry of the parallel mode structure not only in configuration space but also in spectrum space. The mixed approach provides a practical way to analyze the asymmetric component of the global mode structure due to radial equilibrium non-uniformity.

  2. The complex mixed Wentzel-Kramers-Brillouin-full-wave approach and its application to the two dimensional mode structure analysis of ion temperature gradient/collisionless trapped electron mode drift waves

    NASA Astrophysics Data System (ADS)

    Lu, Z. X.

    2015-05-01

    The complex mixed Wentzel-Kramers-Brillouin (WKB)-full-wave approach is applied to the 2D mode structure analysis of ion temperature gradient/collisionless trapped electron mode drift waves in tokamak plasmas. The parallel mode structure is calculated with the full-wave approach, while the radial envelope is calculated with the complex WKB method. The tilting of the global mode structure along radius is demonstrated analytically. The effects of the phase and amplitude variation of the radial envelope on the parallel mode structure are included in terms of a complex radial wave vector in the parallel mode equation. It is shown that the radial equilibrium non-uniformity leads to the asymmetry of the parallel mode structure not only in configuration space but also in spectrum space. The mixed approach provides a practical way to analyze the asymmetric component of the global mode structure due to radial equilibrium non-uniformity.

  3. Multilayer Interconnects for Microfabricated Surface Electrode Ion Traps

    NASA Astrophysics Data System (ADS)

    Amini, Jason; Seidelin, Signe; Wesenberg, Janus; Britton, Joe; Blakestad, Brad; Brown, Kenton; Epstein, Ryan; Home, Jonathan; Jost, John; Langer, Chris; Leibfried, Dietrich; Ozeri, Roee; Wineland, David

    2007-06-01

    Microfabricated surface electrode traps for ions are a promising technology for building scalable trapping geometries for quantum information processing. We have expanded upon our single layer gold-on-fused-silica surface electrode trap [1] to include a second patterned conducting layer under the trapping electrodes and have demonstrated the fabrication of this architecture using standard microfabrication techniques. The multilayer approach allows for a significant increase in multi-zone trapping complexity and permits improved trapping structures that are otherwise unattainable in single layer designs without vertical interconnects through the wafer. Using improved calculational methods [2], we are in the process of optimizing the planar designs to create modular elements that can be joined into larger multi-zone trapping structures. Work supported by DTO and NIST. 1. S. Seidelin et al., Phys. Rev. Lett. 96, 253003 (2006). Also, see the abstract by S. Seidelin. 2. See the abstract by J. H. Wesenberg.

  4. Low trap states in in situ SiN{sub x}/AlN/GaN metal-insulator-semiconductor structures grown by metal-organic chemical vapor deposition

    SciTech Connect

    Lu, Xing; Ma, Jun; Jiang, Huaxing; Liu, Chao; Lau, Kei May

    2014-09-08

    We report the use of SiN{sub x} grown in situ by metal-organic chemical vapor deposition as the gate dielectric for AlN/GaN metal-insulator-semiconductor (MIS) structures. Two kinds of trap states with different time constants were identified and characterized. In particular, the SiN{sub x}/AlN interface exhibits remarkably low trap state densities in the range of 10{sup 11}–10{sup 12 }cm{sup −2}eV{sup −1}. Transmission electron microscopy and X-ray photoelectron spectroscopy analyses revealed that the in situ SiN{sub x} layer can provide excellent passivation without causing chemical degradation to the AlN surface. These results imply the great potential of in situ SiN{sub x} as an effective gate dielectric for AlN/GaN MIS devices.

  5. An ion trap built with photonic crystal fibre technology

    SciTech Connect

    Lindenfelser, F. Keitch, B.; Kienzler, D.; Home, J. P.; Bykov, D.; Uebel, P.; Russell, P. St. J.

    2015-03-15

    We demonstrate a surface-electrode ion trap fabricated using techniques transferred from the manufacture of photonic-crystal fibres. This provides a relatively straightforward route for realizing traps with an electrode structure on the 100 micron scale with high optical access. We demonstrate the basic functionality of the trap by cooling a single ion to the quantum ground state, allowing us to measure a heating rate from the ground state of 787 ± 24 quanta/s. Variation of the fabrication procedure used here may provide access to traps in this geometry with trap scales between 100 μm and 10 μm.

  6. An ion trap built with photonic crystal fibre technology.

    PubMed

    Lindenfelser, F; Keitch, B; Kienzler, D; Bykov, D; Uebel, P; Schmidt, M A; Russell, P St J; Home, J P

    2015-03-01

    We demonstrate a surface-electrode ion trap fabricated using techniques transferred from the manufacture of photonic-crystal fibres. This provides a relatively straightforward route for realizing traps with an electrode structure on the 100 micron scale with high optical access. We demonstrate the basic functionality of the trap by cooling a single ion to the quantum ground state, allowing us to measure a heating rate from the ground state of 787 ± 24 quanta/s. Variation of the fabrication procedure used here may provide access to traps in this geometry with trap scales between 100 μm and 10 μm. PMID:25832211

  7. Oxide trap relaxation spectroscopy: A new difference method to determine trap in oxidized silicon

    NASA Astrophysics Data System (ADS)

    Tan, Changhua; Xu, Mingzhen; Liu, Xiaowei; He, Yandong; Wang, Yangyuan

    1995-03-01

    A difference analysis method has been presented to separate and characterize interface and oxide traps generated in the metal-oxide-semiconductor structure under Fowler-Nordheim stress. The oxide trap relaxation measurement has been performed in dynamic voltage mode. For a high constant voltage stress condition, the effective oxide traps can be obtained by the difference Fowler-Nordheim current relaxation characteristics. For a low-voltage condition, the interface and effective oxide traps can be separated and determined by the difference subthreshold voltage relaxation characteristics. Using combined difference Fowler-Nordheim current and subthreshold voltage measurements, the density, centroid, and generation/capture cross section of the oxide traps can be obtained without the double current-voltage technique, thus permitting more accurate and quick measurement of the generated oxide traps. All difference Fowler-Nordheim current and subthreshold voltage versus the electron-fluence characteristics exhibit spectrum features. Analytical expressions for computing the interface and oxide traps have been derived and experimental results have been presented for a Fowler-Nordheim tunnel metal-oxide-semiconductor structure. Two interface and two oxide traps generated at Fowler-Nordheim stress have been obtained by the new technique.

  8. Traps in Al2O3 detected by tunneling

    NASA Technical Reports Server (NTRS)

    Skarlatos, Y.; Barker, R. C.; Yelon, A.

    1976-01-01

    A structure, quite different from inelastic tunneling peaks, has been observed in electron-tunneling spectra of MOM junctions. A capacitance peak is associated with this structure, which is attributed to traps in the oxide at energies smaller than those previously reported. The C-V characteristics calculated using a single-energy trap model agree with experimental results; however, no satisfactory explanation has yet been found to account for the strong temperature dependence of the trap energy levels.

  9. Trapping deuterium atoms

    SciTech Connect

    Wiederkehr, A. W.; Hogan, S. D.; Lambillotte, B.; Andrist, M.; Schmutz, H.; Agner, J.; Salathe, Y.; Merkt, F.

    2010-02-15

    Cold deuterium atoms in a supersonic beam have been decelerated from an initial velocity of 475 m/s to zero velocity in the laboratory frame using a 24-stage Zeeman decelerator. The atoms have been loaded in a magnetic quadrupole trap at a temperature of {approx}100 mK and an initial density of {approx}10{sup 6} cm{sup -3}. Efficient deceleration was achieved by pulsing the magnetic fields in the decelerator solenoids using irregular sequences of phase angles. Trap loading was optimized by monitoring and suppressing the observed reflection of the atoms by the field gradient of the back solenoid of the trap.

  10. Managing resonant trapped orbits in our Galaxy

    NASA Astrophysics Data System (ADS)

    Binney, James

    2016-08-01

    Galaxy modelling is greatly simplified by assuming the existence of a global system of angle-action coordinates. Unfortunately, global angle-action coordinates do not exist because some orbits become trapped by resonances, especially where the radial and vertical frequencies coincide. We show that in a realistic Galactic potential such trapping occurs only on thick-disc and halo orbits (speed relative to the guiding centre ≳ 80 km s-1). We explain how the Torus Mapper code (TM) behaves in regions of phase space in which orbits are resonantly trapped, and we extend TM so trapped orbits can be manipulated as easily as untrapped ones. The impact that the resonance has on the structure of velocity space depends on the weights assigned to trapped orbits. The impact is everywhere small if each trapped orbit is assigned the phase space density equal to the time average along the orbit of the DF for untrapped orbits. The impact could be significant with a different assignment of weights to trapped orbits.

  11. Modeling of trap-assisted tunneling on performance of charge trapping memory with consideration of trap position and energy level

    NASA Astrophysics Data System (ADS)

    Lun, Zhi-Yuan; Li, Yun; Zhao, Kai; Du, Gang; Liu, Xiao-Yan; Wang, Yi

    2016-08-01

    In this work, the trap-assisted tunneling (TAT) mechanism is modeled as a two-step physical process for charge trapping memory (CTM). The influence of the TAT mechanism on CTM performance is investigated in consideration of various trap positions and energy levels. For the simulated CTM structure, simulation results indicate that the positions of oxide traps related to the maximum TAT current contribution shift towards the substrate interface and charge storage layer interface during time evolutions in programming and retention operations, respectively. Lower programming voltage and retention operations under higher temperature are found to be more sensitive to tunneling oxide degradation. Project supported by the National Natural Science Foundation of China (Grant Nos. 61404005, 61421005, and 91434201).

  12. Optically trapped fluorescent nanodiamonds

    NASA Astrophysics Data System (ADS)

    Horowitz, Viva R.; Alemán, Benjamin J.; Christle, David; Cleland, Andrew N.; Awschalom, David D.

    2012-02-01

    The electronic spin state of the nitrogen-vacancy (NV) center in diamond has gained considerable interest because it can be optically initialized, coherently manipulated, and optically read out at room temperature. In addition, nanoparticle diamonds containing NV centers can be integrated with biological and microfluidic systems. We have constructed and characterized an optical tweezers apparatus to trap fluorescent nanodiamonds in a fluid and measure their fluorescence. Particles are held and moved in three dimensions using an infrared trapping laser. Fluorescent detection of these optically trapped nanodiamonds enables us to observe nanoparticle dynamics and to measure electron spin resonance of NV centers. We will discuss applications using the electron spin resonance of trapped NV centers in nanodiamonds for magnetic field imaging in fluidic environments.

  13. Steam trap monitor

    DOEpatents

    Ryan, M.J.

    1987-05-04

    A steam trap monitor positioned downstream of a steam trap in a closed steam system includes a first sensor (a hot finger) for measuring the energy of condensate and a second sensor (a cold finger) for measuring the total energy of condensate and steam in the line. The hot finger includes one or more thermocouples for detecting condensate level and energy, while the cold finger contains a liquid with a lower boiling temperature than that of water. Vapor pressure from the liquid is used to do work such as displacing a piston or bellow in providing an indication of total energy (steam + condensate) of the system. Processing means coupled to and responsive to outputs from the hot and cold fingers subtracts the former from the latter to provide an indication of the presence of steam downstream from the trap indicating that the steam trap is malfunctioning. 2 figs.

  14. Trapping and Probing Antihydrogen

    SciTech Connect

    Wurtele, Jonathan

    2013-03-27

    Precision spectroscopy of antihydrogen is a promising path to sensitive tests of CPT symmetry. The most direct route to achieve this goal is to create and probe antihydrogen in a magnetic minimum trap. Antihydrogen has been synthesized and trapped for 1000s at CERN by the ALPHA Collaboration. Some of the challenges associated with achieving these milestones will be discussed, including mixing cryogenic positron and antiproton plasmas to synthesize antihydrogen with kinetic energy less than the trap potential of .5K. Recent experiments in which hyperfine transitions were resonantly induced with microwaves will be presented. The opportunity for gravitational measurements in traps based on detailed studies of antihydrogen dynamics will be described. The talk will conclude with a discussion future antihydrogen research that will use a new experimental apparatus, ALPHA-I.

  15. Strong M1 components in 3{sub i}{sup -}->3{sub 1}{sup -} transitions in nearly spherical nuclei: Evidence for isovector-octupole excitations

    SciTech Connect

    Scheck, M.; Butler, P. A.; Fransen, C.; Werner, V.; Yates, S. W.

    2010-06-15

    An evaluation of data obtained in (n,n{sup '}gamma) experiments reveals strong M1 3{sub i}{sup -}->3{sub 1}{sup -} transitions in nuclei near the N=50 ({sup 92}Zr, {sup 94}Mo, and {sup 96}Mo), Z=50 ({sup 112}Cd and {sup 114}Cd), and N=82 ({sup 144}Nd) shell closures. The observed <3{sub 1}{sup -}||M1||3{sub i}{sup -}> matrix elements scale with the <2{sub 1}{sup +}||M1||2{sub ms}{sup +}> matrix elements connecting the mixed-symmetric and symmetric quadrupole excitations. In accordance with a picture of a mixed two-component quantum system, the energy difference between the initial 3{sub i}{sup -} state and the 3{sub 1}{sup -} octupole phonon is proportional to the |<3{sub 1}{sup -}||E3||0{sub gs}{sup +}>| matrix element. The possibility of assigning the 3{sup -} states of interest as octupole isovector states is discussed.

  16. Reactive Transport Modeling of Geologic CO{sub 2} Sequestration in Saline Aquifers: The Influence of Intra-Aquifer Shales and the Relative Effectiveness of Structural, Solubility, and Mineral Trapping During Prograde and Retrograde Sequestration

    SciTech Connect

    Johnson, J W; Nitao, J J; Steefel, C I; Knauss, K G

    2001-04-24

    In this study, we address a series of fundamental questions regarding the processes and effectiveness of geologic CO{sub 2} sequestration in saline aquifers. We begin with the broadest: what is the ultimate fate of CO{sub 2} injected into these environments? Once injected, it is immediately subject to two sets of competing processes: migration processes and sequestration processes. In terms of migration, the CO{sub 2} moves by volumetric displacement of formation waters, with which it is largely immiscible; by gravity segregation, which causes the immiscible CO{sub 2} plume to rise owing to its relatively low density; and by viscous fingering, owing to its relatively low viscosity. In terms of sequestration, some fraction of the rising plume will dissolve into formation waters (solubility trapping); some fraction may react with formation minerals to precipitate carbonates (mineral trapping); and the remaining portion eventually reaches the cap rock, where it migrates up-dip, potentially accumulating in local topographic highs (structural trapping). Although this concept of competing migration/sequestration processes is intuitively obvious, identifying those sub-processes that dominate the competition is by no means straightforward. Hence, at present there are large uncertainties associated with the ultimate fate of injected CO{sub 2} (Figure 1). Principal among these: can a typical shale cap rock provide a secure seal? Because gravity segregation will always keep the immiscible CO{sub 2} plume moving towards the surface, caprock integrity is the single most important variable influencing isolation security. An extremely thick shale cap rock exists at Sleipner (several 100 m); here, however, we examine the performance of a 25-m-thick cap, which is more representative of the general case. Although the cap rock represents the final barrier to vertical CO{sub 2} migration, what is the effect of intra-aquifer permeability structure? Because this structure directs the

  17. Atom trap loss, elastic collisions, and technology

    NASA Astrophysics Data System (ADS)

    Booth, James

    2012-10-01

    The study of collisions and scattering has been one of the most productive approaches for modern physics, illuminating the fundamental structure of crystals, surfaces, atoms, and sub-atomic particles. In the field of cold atoms, this is no less true: studies of cold atom collisions were essential to the production of quantum degenerate matter, the formation of cold molecules, and so on. Over the past few years it has been my delight to investigate elastic collisions between cold atoms trapped in either a magneto-optical trap (MOT) or a magnetic trap with hot, background gas in the vacuum environment through the measurement of the loss of atoms from the trap. Motivated by the goal of creating cold atom-based technology, we are deciphering what the trapped atoms are communicating about their environment through the observed loss rate. These measurements have the advantages of being straightforward to implement and they provide information about the underlying, fundamental inter-atomic processes. In this talk I will present some of our recent work, including the observation of the trap depth dependence on loss rate for argon-rubidium collisions. The data follow the computed loss rate curve based on the long-range Van der Waals interaction between the two species. The implications of these findings are exciting: trap depths can be determined from the trap loss measurement under controlled background density conditions; observation of trap loss rate in comparison to models for elastic, inelastic, and chemical processes can lead to improved understanding and characterization of these fundamental interactions; finally the marriage of cold atoms with collision modeling offers the promise of creating a novel pressure sensor and pressure standard for the high and ultra-high vacuum regime.

  18. Optical trapping of nanoshells

    NASA Astrophysics Data System (ADS)

    Hester, Brooke C.; Crawford, Alice; Kishore, Rani B.; Helmerson, Kristian; Halas, Naomi J.; Levin, Carly

    2007-09-01

    We investigate near-resonant trapping of Rayleigh particles in optical tweezers. Although optical forces due to a near-resonant laser beam have been extensively studied for atoms, the situation for larger particles is that the laser wavelength is far from any absorption resonance. Theory predicts, however, that the trapping force exerted on a Rayleigh particle is enhanced, and may be three to fifty times larger for frequencies near resonance than for frequencies far off resonance. The ability to selectively trap only particles with a given absorption peak may have many practical applications. In order to investigate near-resonant trapping we are using nanoshells, particles with a dielectric core and metallic coating that can exhibit plasmon resonances. The resonances of the nanoshells can be tuned by adjusting the ratio of the radius of the dielectric core, r I, to the overall radius, r II, which includes the thickness of the metallic coating. Our nanoshells, fabricated at Rice University, consist of a silica core with a gold coating. Using back focal plane detection, we measure the trap stiffness of a single focus optical trap (optical tweezers), from a diode laser at 853 nm for nanoshells with several different r I/r II ratios.

  19. Microfabricated cylindrical ion trap

    DOEpatents

    Blain, Matthew G.

    2005-03-22

    A microscale cylindrical ion trap, having an inner radius of order one micron, can be fabricated using surface micromachining techniques and materials known to the integrated circuits manufacturing and microelectromechanical systems industries. Micromachining methods enable batch fabrication, reduced manufacturing costs, dimensional and positional precision, and monolithic integration of massive arrays of ion traps with microscale ion generation and detection devices. Massive arraying enables the microscale cylindrical ion trap to retain the resolution, sensitivity, and mass range advantages necessary for high chemical selectivity. The microscale CIT has a reduced ion mean free path, allowing operation at higher pressures with less expensive and less bulky vacuum pumping system, and with lower battery power than conventional- and miniature-sized ion traps. The reduced electrode voltage enables integration of the microscale cylindrical ion trap with on-chip integrated circuit-based rf operation and detection electronics (i.e., cell phone electronics). Therefore, the full performance advantages of microscale cylindrical ion traps can be realized in truly field portable, handheld microanalysis systems.

  20. Metallic nano-particles for trapping light

    PubMed Central

    2013-01-01

    We study metallic nano-particles for light trapping by investigating the optical absorption efficiency of the hydrogenated amorphous silicon thin film with and without metallic nano-particles on its top. The size and shape of these nano-particles are investigated as to their roles of light trapping: scattering light to the absorption medium and converting light to surface plasmons. The optical absorption enhancement in the red light region (e.g., 650nm) due to the light trapping of the metallic nano-particles is observed when a layer of metallic nano-particle array has certain structures. The investigation of the light with incident angles shows the importance of the coupling efficiency of light to surface plasmons in the metallic nano-particle light trapping. PACS 73.20.Mf, 42.25.s, 88.40.hj PMID:23391493

  1. Electron Traps at the Ice Surface

    NASA Astrophysics Data System (ADS)

    Bockstedte, Michel; Auburger, Philipp; Michl, Anja

    Water, water clusters and ice possess the fascinating ability to solvate electrons. On the surface of water cluster1 and thin crystalline ice structures on a metal substrate2 long-living solvated electron states were observed that evolve from pre-existing surface traps. The identification of such traps provides important insight into the electronic structure of the water or ice surface, and the dissociative interaction of electrons with adsorbates. Models2,3 based on the bilayer terminated Ih-(0001) surface related such traps to orientational defects or vacancies. So far, the understanding of the electronic structure of the ice surface with the electron traps is incomplete. Here we address this issue including also water ad-structures4 within hybrid density functional theory and many-body perturbation theory (G0W0). We identify a hierachy of traps with increasing vertical electron affinity, ranging from hexagon adrows to clusters of orientational defects and vacancies with dangling OH-groups. Siefermann and Abel, Angew. Chem. Int. Ed. 50, 5264 (2011). Bovensiepen et al., J. Chem. Phys. C 113, 979 (2013). Hermann et al., J. Phys.: cond. matter 20, 225003 (2008). Mehlhorn and Morgenstern, Phys. Rev. Lett. 99, 246101 (2007)

  2. Subsurface Rock Damage Structure of the Mw7.1 Darfield and Mw6.3 Christchurch Earthquake Sequence Viewed with Fault-Zone Trapped Waves

    NASA Astrophysics Data System (ADS)

    Li, Y.; De Pascale, G. P.; Quigley, M. C.; Gravley, D.

    2012-12-01

    In order to document the subsurface structure of the damage zones caused by multiple slips in the 2010 Mw7.1 Darfield - 2011 Mw6.3 Christchurch earthquake sequence in NZ's South Island, we deployed two short linear seismic arrays in the Canterbury region to record aftershocks in middle 2011. Array 1 was deployed across the central Greendale fault (GF) where right-lateral slip of ~4.5 m was measured across the surface rupture of the 2010 Darfield mainshock. Array 2 was located at the surface projection of an aftershock zone along the blind Port Hills fault (PHF) which ruptured in the 2011 Christchurch earthquake. We have examined the data for 853 aftershocks and identified prominent fault-zone trapped waves (FZTWs) with large amplitude and long wavetrains following S-arrivals at stations of Array 1 within the ~200-m-wide rupture zone for aftershocks occurring along the GF and the PHF. The post-S durations of these FZTWs increase as event depth and epicentral distance increase, showing an effective low-velocity waveguide formed by severely damaged rocks extending along the GF and PHF at seismogenic depth, but with variations in its geometry and velocity reduction along multiple rupture segments. The FZTWs suggest that the Darfield rupture zone extends eastward as bifurcating blind fault segments an additional ~5-8 km beyond the mapped ~30-km extent of the GF surface rupture, consistent with aftershock distributions and geodetic models. On the other hand, the main rupture of the Mw6.3 Christchurch earthquake is ~15-km in length on the blind PHF dipping to SSE, but it likely extends westward along the aftershock lineament approaching the east blind extension of the GF/Darfield rupture. These two main rupture segments might connect through a weak portion of the low-velocity waveguide formed by rocks along blind faults that experienced milder damage beneath the dilatational fault step-over where accumulated seismic energy release was lower than adjacent rupture zones in

  3. Discovery of {sup 229}Rn and the Structure of the Heaviest Rn and Ra Isotopes from Penning-Trap Mass Measurements

    SciTech Connect

    Neidherr, D.; Boehm, Ch.; Audi, G.; Lunney, D.; Minaya-Ramirez, E.; Naimi, S.; Beck, D.; Herfurth, F.; Blaum, K.; George, S.; Kellerbauer, A.; Breitenfeldt, M.; Rosenbusch, M.; Schweikhard, L.; Cakirli, R. B.; Casten, R. F.; Herlert, A.; Kowalska, M.; Noah, E.; Penescu, L.

    2009-03-20

    The masses of the neutron-rich radon isotopes {sup 223-229}Rn have been determined for the first time, using the ISOLTRAP setup at CERN ISOLDE. In addition, this experiment marks the first discovery of a new nuclide, {sup 229}Rn, by Penning-trap mass measurement. The new, high-accuracy data allow a fine examination of the mass surface, via the valence-nucleon interaction {delta}V{sub pn}. The results reveal intriguing behavior, possibly reflecting either a N=134 subshell closure or an octupolar deformation in this region.

  4. Switching Oxide Traps

    NASA Technical Reports Server (NTRS)

    Oldham, Timothy R.

    2003-01-01

    We consider radiation-induced charge trapping in SiO2 dielectric layers, primarily from the point of view of CMOS devices. However, SiO2 insulators are used in many other ways, and the same defects occur in other contexts. The key studies, which determined the nature of the oxide charge traps, were done primarily on gate oxides in CMOS devices, because that was the main radiation problem in CMOS at one time. There are two major reviews of radiation-induced oxide charge trapping already in the literature, which discuss the subject in far greater detail than is possible here. The first of these was by McLean et al. in 1989, and the second, ten years later, was intended as an update, because of additional, new work that had been reported. Basically, the picture that has emerged is that ionizing radiation creates electron-hole pairs in the oxide, and the electrons have much higher mobility than the holes. Therefore, the electrons are swept out of the oxide very rapidly by any field that is present, leaving behind any holes that escape the initial recombination process. These holes then undergo a polaron hopping transport toward the Si/SiO2 interface (under positive bias). Near the interface, some fraction of them fall into deep, relatively stable, long-lived hole traps. The nature and annealing behavior of these hole traps is the main focus of this paper.

  5. Thermoelectrically cooled water trap

    DOEpatents

    Micheels, Ronald H.

    2006-02-21

    A water trap system based on a thermoelectric cooling device is employed to remove a major fraction of the water from air samples, prior to analysis of these samples for chemical composition, by a variety of analytical techniques where water vapor interferes with the measurement process. These analytical techniques include infrared spectroscopy, mass spectrometry, ion mobility spectrometry and gas chromatography. The thermoelectric system for trapping water present in air samples can substantially improve detection sensitivity in these analytical techniques when it is necessary to measure trace analytes with concentrations in the ppm (parts per million) or ppb (parts per billion) partial pressure range. The thermoelectric trap design is compact and amenable to use in a portable gas monitoring instrumentation.

  6. Interfacial Charge-Carrier Trapping in CH3NH3PbI3-Based Heterolayered Structures Revealed by Time-Resolved Photoluminescence Spectroscopy.

    PubMed

    Yamada, Yasuhiro; Yamada, Takumi; Shimazaki, Ai; Wakamiya, Atsushi; Kanemitsu, Yoshihiko

    2016-06-01

    The fast-decaying component of photoluminescence (PL) under very weak pulse photoexcitation is dominated by the rapid relaxation of the photoexcited carriers into a small number of carrier-trapping defect states. Here, we report the subnanosecond decay of the PL under excitation weaker than 1 nJ/cm(2) both in CH3NH3PbI3-based heterostructures and bare thin films. The trap-site density at the interface was evaluated on the basis of the fluence-dependent PL decay profiles. It was found that high-density defects determining the PL decay dynamics are formed near the interface between CH3NH3PbI3 and the hole-transporting Spiro-OMeTAD but not at the CH3NH3PbI3/TiO2 interface and the interior regions of CH3NH3PbI3 films. This finding can aid the fabrication of high-quality heterointerfaces, which are required improving the photoconversion efficiency of perovskite-based solar cells. PMID:27157358

  7. Asymmetric ion trap

    DOEpatents

    Barlow, Stephan E.; Alexander, Michael L.; Follansbee, James C.

    1997-01-01

    An ion trap having two end cap electrodes disposed asymmetrically about a center of a ring electrode. The inner surface of the end cap electrodes are conformed to an asymmetric pair of equipotential lines of the harmonic formed by the application of voltages to the electrodes. The asymmetry of the end cap electrodes allows ejection of charged species through the closer of the two electrodes which in turn allows for simultaneously detecting anions and cations expelled from the ion trap through the use of two detectors charged with opposite polarity.

  8. Ion trap device

    DOEpatents

    Ibrahim, Yehia M.; Smith, Richard D.

    2016-01-26

    An ion trap device is disclosed. The device includes a series of electrodes that define an ion flow path. A radio frequency (RF) field is applied to the series of electrodes such that each electrode is phase shifted approximately 180 degrees from an adjacent electrode. A DC voltage is superimposed with the RF field to create a DC gradient to drive ions in the direction of the gradient. A second RF field or DC voltage is applied to selectively trap and release the ions from the device. Further, the device may be gridless and utilized at high pressure.

  9. HWVP Iodine Trap Evaluation

    SciTech Connect

    Burger, Leland L.; Scheele, Randall D.

    2004-09-24

    This report details our assessment of the chemistry of the planned Hanford Waste Vitrification Plant (HWVP) off-gas system and its impact on the applicability of known iodine removal and control methods. To predict the gaseous species in the off-gas system, we completed thermodynamic calculations to determine theoretical equilibrium concentrations of the various potential chemical species. In addition, we found that HWVP pilot-plant experiments were generally consistent with the known chemistry of the individual elements present in the off gas. Of the known trapping techniques for radioiodine, caustic scrubbing and silver-containing sorbents are, in our opinion, the most attractive methods to reduce the iodine concentration in the HWVP melter off gas (MOG) after it has passed through the high-efficiency particulate air (HEPA) filter. These two methods were selected because they (1) have demonstrated retention factors (RFs), ratio of amount in and amount out, of 10 to 1000, which would be sufficient to reduce the iodine concentration in the MOG to below regulatory limits; (2) are simple to apply; (3) are resistant to oxidizing gases such as NOx; (4) do not employ highly hazardous or highly corrosive agents; (5) require containment vessels constructed or common materials; (6) have received extensive laboratory development; (7) and the radioactive wastes produced should be easy to handle. On the basis of iodine trapping efficiency, simplicity of operation, and waste management, silver sorbents are superior to caustic scrubbing, and, or these sorbents, we prefer the silver zeolites. No method has been fully demonstrated, from laboratory-scale through pilot-plant testing, to be an effective iodine trap at the low iodine concentration (2 x 10-11 mol I/L) expected in the MOG of the HWVP in the presence of the other gaseous off gas components. In terms of compatibility of the trapping technology with the components in the MOG, there is some question about the resistance of

  10. Ultrahigh-performance liquid chromatography-ion trap mass spectrometry characterization of the steroidal saponins of Dioscorea panthaica Prain et Burkill and its application for accelerating the isolation and structural elucidation of steroidal saponins.

    PubMed

    Wang, Weihao; Zhao, Ye; Jing, Wenguang; Zhang, Jun; Xiao, Hui; Zha, Qin; Liu, An

    2015-03-01

    Dioscorea panthaica is a traditional Chinese medicinal herb used in the treatment of various physiological conditions, including cardiovascular disease, gastropathy and hypertension. Steroidal saponins (SS) are the main active ingredients of this herb and have effects on myocardial ischemia and cancer. The phytochemical evaluation of SS is both time-consuming and laborious, and the isolation and structural determination steps can be especially demanding. For this reason, the development of new methods to accelerate the processes involved in the identification, isolation and structural elucidation of SS is highly desirable. In this study, a new ultrahigh performance liquid chromatography-ion trap mass spectrometry (UHPLC-IT/MS(n)) method has been developed for the identification of the SS in D. panthaica Prain et Burkill. Notably, the current method can distinguish between spirostanol and furostanol-type compounds based on the fragmentation patterns observed by electrospray ionization-ion trap mass spectrometry (ESI-IT/MS(n)) analysis. UHPLC-IT/MS(n) was used to conduct a detailed investigation of the number, structural class and order of the sugar moieties in the sugar chains of the SS present in D. panthaica. The established fragmentation features were used to analyze the compounds found in the 65% ethanol fraction of the water extracts of D. panthaica. Twenty-three SS were identified, including 11 potential new compounds and six groups of isomers. Two of these newly identified SS were selected as representative examples, and their chemical structures were confirmed by (1)H and (13)C NMR analyses. This newly developed UHPLC-IT/MS(n) method therefore allowed for the efficient identification, isolation and structural determination of the SS in D. panthaica. PMID:25575790

  11. Measurement of Trap Length for an Optical Trap

    NASA Technical Reports Server (NTRS)

    Wrbanek, Susan Y.

    2009-01-01

    The trap length along the beam axis for an optical trap formed with an upright, oil-immersion microscope was measured. The goals for this effort were twofold. It was deemed useful to understand the depth to which an optical trap can reach for purposes of developing a tool to assist in the fabrication of miniature devices. Additionally, it was desired to know whether the measured trap length favored one or the other of two competing theories to model an optical trap. The approach was to trap a microsphere of known size and mass and raise it from its initial trap position. The microsphere was then dropped by blocking the laser beam for a pre-determined amount of time. Dropping the microsphere in a free-fall mode from various heights relative to the coverslip provides an estimate of how the trapping length changes with depth in water in a sample chamber on a microscope slide. While it was not possible to measure the trap length with sufficient precision to support any particular theory of optical trap formation, it was possible to find regions where the presence of physical boundaries influenced optical traps, and determine that the trap length, for the apparatus studied, is between 6 and 7 m. These results allow more precise control using optical micromanipulation to assemble miniature devices by providing information about the distance over which an optical trap is effective.

  12. Practical axial optical trapping

    PubMed Central

    Mack, A. H.; Schlingman, D. J.; Regan, L.; Mochrie, S. G. J.

    2012-01-01

    We describe a new method for calibrating optical trapping measurements in which tension is applied in the direction of the laser beam to a molecule tethered between a surface and an optically trapped bead. Specifically, we present a generally-applicable procedure for converting from the measured scattering intensity and the measured stage displacement to applied tension and bead-coverslip separation, using measurements of the light intensity scattered from an untethered, trapped bead. Our calibration accounts for a number of effects, including aberrations and the interference of forward-reflected bead-scattered light with the trapping beam. To demonstrate the accuracy of our method, we show measurements of the DNA force-versus-extension relation using a range of laser intensities, and show that these measurements match the expected extensible wormlike-chain (WLC) behavior. Finally, we also demonstrate a force-clamp, in which the tension in a tether is held fixed while the extension varies as a result of molecular events. PMID:23126750

  13. Steam trap monitor

    DOEpatents

    Ryan, Michael J.

    1988-01-01

    A steam trap monitor positioned downstream of a steam trap in a closed steam system includes a first sensor (the combination of a hot finger and thermocouple well) for measuring the energy of condensate and a second sensor (a cold finger) for measuring the total energy of condensate and steam in the line. The hot finger includes one or more thermocouples for detecting condensate level and energy, while the cold finger contains a liquid with a lower boiling temperature than that of water. Vapor pressure from the liquid is used to do work such as displacing a piston or bellows in providing an indication of total energy (steam+condensate) of the system. Processing means coupled to and responsive to outputs from the thermocouple well hot and cold fingers subtracts the condensate energy as measured by the hot finger and thermocouple well from the total energy as measured by the cold finger to provide an indication of the presence of steam downstream from the trap indicating that the steam trap is malfunctioning.

  14. Rotating Saddle Paul Trap.

    ERIC Educational Resources Information Center

    Rueckner, Wolfgang; And Others

    1995-01-01

    Describes a demonstration in which a ball is placed in an unstable position on a saddle shape. The ball becomes stable when it is rotated above some threshold angular velocity. The demonstration is a mechanical analog of confining a particle in a "Paul Trap". (DDR)

  15. The Universal Trap.

    ERIC Educational Resources Information Center

    Goodman, Paul

    The compulsory system of education is criticized on the grounds that it has become a regimented "universal trap" antithetical to democracy. In contrast to the Jeffersonian concept of education in the service of citizen initiative for the preservation of freedom, current compulsory education is a tool of industrialism and of a rigidly stratified…

  16. WATER-TRAPPED WORLDS

    SciTech Connect

    Menou, Kristen

    2013-09-01

    Although tidally locked habitable planets orbiting nearby M-dwarf stars are among the best astronomical targets to search for extrasolar life, they may also be deficient in volatiles and water. Climate models for this class of planets show atmospheric transport of water from the dayside to the nightside, where it is precipitated as snow and trapped as ice. Since ice only slowly flows back to the dayside upon accumulation, the resulting hydrological cycle can trap a large amount of water in the form of nightside ice. Using ice sheet dynamical and thermodynamical constraints, I illustrate how planets with less than about a quarter the Earth's oceans could trap most of their surface water on the nightside. This would leave their dayside, where habitable conditions are met, potentially dry. The amount and distribution of residual liquid water on the dayside depend on a variety of geophysical factors, including the efficiency of rock weathering at regulating atmospheric CO{sub 2} as dayside ocean basins dry up. Water-trapped worlds with dry daysides may offer similar advantages as land planets for habitability, by contrast with worlds where more abundant water freely flows around the globe.

  17. Traps and trapping techniques for adult mosquito control

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An overview is presented of the recent advancements in research activities conducted to evaluate mosquito traps, insecticide-impregnated targets baited with combinations of attractants, and strategies for using mass trapping techniques for adult mosquito population management. Technologies that use...

  18. A Scalable Microfabricated Ion Trap for Quantum Information Processing

    NASA Astrophysics Data System (ADS)

    Maunz, Peter; Haltli, Raymond; Hollowell, Andrew; Lobser, Daniel; Mizrahi, Jonathan; Rembetski, John; Resnick, Paul; Sterk, Jonathan D.; Stick, Daniel L.; Blain, Matthew G.

    2016-05-01

    Trapped Ion Quantum Information Processing (QIP) relies on complex microfabricated trap structures to enable scaling of the number of quantum bits. Building on previous demonstrations of surface-electrode ion traps, we have designed and characterized the Sandia high-optical-access (HOA-2) microfabricated ion trap. This trap features high optical access, high trap frequencies, low heating rates, and negligible charging of dielectric trap components. We have observed trap lifetimes of more than 100h, measured trap heating rates for ytterbium of less than 40quanta/s, and demonstrated shuttling of ions from a slotted to an above surface region and through a Y-junction. Furthermore, we summarize demonstrations of high-fidelity single and two-qubit gates realized in this trap. Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy's National Nuclear Security Administration under Contract DE-AC04-94AL85000. This work was supported by the Intelligence Advanced Research Projects Activity (IARPA).

  19. Trapping cold molecular hydrogen.

    PubMed

    Seiler, Ch; Hogan, S D; Merkt, F

    2011-11-14

    Translationally cold H(2) molecules excited to non-penetrating |M(J)| = 3 Rydberg states of principal quantum number in the range 21-37 have been decelerated and trapped using time-dependent inhomogeneous electric fields. The |M(J)| = 3 Rydberg states were prepared from the X (1)Σ(+)(u)(v = 0, J = 0) ground state using a resonant three-photon excitation sequence via the B (1)Σ(+)(u)(v = 3, J = 1) and I (1)Π(g) (v = 0, J = 2) intermediate states and circularly polarized laser radiation. The circular polarization of the vacuum ultraviolet radiation used for the B ← X transition was generated by resonance-enhanced four-wave mixing in xenon and the degree of circular polarization was determined to be 96%. To analyse the deceleration and trapping experiments, the Stark effect in Rydberg states of molecular hydrogen was calculated using a matrix diagonalization procedure similar to that presented by Yamakita et al., J. Chem. Phys., 2004, 121, 1419. Particular attention was given to the prediction of zero-field positions of low-l states and of avoided crossings between Rydberg-Stark states with different values of |M(J)|. The calculated Stark maps and probabilities for diabatic traversal of the avoided crossings were used as input to Monte-Carlo particle-trajectory simulations. These simulations provide a quantitatively satisfactory description of the experimental data and demonstrate that particle loss caused by adiabatic traversals of avoided crossings between adjacent |M(J)| = 3 Stark states of H(2) is small at principal quantum numbers beyond n = 25. The main source of trap losses was found to be from collisional processes. Predissociation following the absorption of blackbody radiation is estimated to be the second most important trap-loss mechanism at room temperature, and trap loss by spontaneous emission is negligible under our experimental conditions. PMID:21818497

  20. Development of neutral atom traps based on a microfabricated waveguide

    NASA Astrophysics Data System (ADS)

    Jau, Yuan-Yu; Lee, Jongmin; Biedermann, Grant; Siddiqui, Aleem; Eichenfield, Matt; Dougla, Erica

    2016-05-01

    Implementation of trapping neutral atoms in the evanescent fields generated by a nano-structure, such as a nanofiber or a microfabricated nano-waveguide, will naturally enable strong atom-photon interactions, which serve the key mechanisms for different type of quantum controls. At Sandia National Labs, we are aiming to develop a platform based on this concept to eventually trap cesium atoms with a microfabricated waveguide. Although, neutral atom traps using optical nanofiber has been demonstrated, there are several key issues that need to be resolved to realize trapping atoms with microfabricated structure. The subjects include the material for making the waveguide, optical power handling capability, surface adsorption of alkali-metal atoms, surface roughness of the nano-structure, cold-atom source for loading the atoms into the evanescent-field traps, etc. We will discuss our studies on these related subjects and report our latest progress.

  1. Characterization and manipulation of a high-magnetic field trap

    NASA Astrophysics Data System (ADS)

    Paradis, Eric; Raithel, Georg

    2012-06-01

    We report on the characterization of an efficient atom trap within a background magnetic field of 2.6 Tesla. Up to 10̂8 Rubidium atoms are recaptured from a cold atomic beam with a 2-3% collection efficiency, in a cigar-shaped volume and cooled with a six-beam optical molasses. The aspect ratio of the trap is measured as a function of the magnetic field curvature, which can be varied to produce a range of trap shapes. The trapping lineshape is both narrow and asymmetric, as is characteristic of laser-cooling of atoms or ions in an external trapping potential. Additional features of the high magnetic field trap include cooling onto hollow shell-like structures. Simulation results are also presented.

  2. Newly discovered landscape traps produce regime shifts in wet forests

    PubMed Central

    Lindenmayer, David B.; Hobbs, Richard J.; Likens, Gene E.; Krebs, Charles J.; Banks, Samuel C.

    2011-01-01

    We describe the “landscape trap” concept, whereby entire landscapes are shifted into, and then maintained (trapped) in, a highly compromised structural and functional state as the result of multiple temporal and spatial feedbacks between human and natural disturbance regimes. The landscape trap concept builds on ideas like stable alternative states and other relevant concepts, but it substantively expands the conceptual thinking in a number of unique ways. In this paper, we (i) review the literature to develop the concept of landscape traps, including their general features; (ii) provide a case study as an example of a landscape trap from the mountain ash (Eucalyptus regnans) forests of southeastern Australia; (iii) suggest how landscape traps can be detected before they are irrevocably established; and (iv) present evidence of the generality of landscape traps in different ecosystems worldwide. PMID:21876151

  3. Compact toroidal ion-trap design and optimization

    SciTech Connect

    Madsen, M. J.; Gorman, C. H.

    2010-10-15

    We present the design of a type of compact toroidal, or 'halo', ion trap. Such traps may be useful for mass spectrometry, studying small Coulomb cluster rings, quantum-information applications, or other quantum simulations where a ring topology is of interest. We present results from a Monte Carlo optimization of the trap design parameters using finite-element analysis simulations that minimize higher-order anharmonic terms in the trapping pseudopotential, while maintaining complete control over ion placement at the pseudopotential node in three dimensions using static bias fields. These simulations are based on a practical electrode design using readily available parts, yet can be easily scaled to any size trap with similar electrode spacings. We also derive the conditions for a crystal structure transition for two ions in the compact halo trap, the first nontrivial transition for Coulomb crystals in this geometry.

  4. Equilibrium of non-neutral plasmas in a Malmberg-Penning trap with a weakly tilted magnetic field

    SciTech Connect

    Kotelnikov, Igor; Rome, Massimiliano

    2008-07-15

    The effect of small asymmetric magnetic perturbations on the equilibrium of a non-neutral plasma confined in a Malmberg-Penning trap is analyzed. A constraint, known in the theory of tandem mirrors as the condition of current closure, is derived for non-neutral plasmas. Together with Poisson's equation, this constraint provides a set of equations for determining self-consistent asymmetric equilibria of non-neutral plasmas in Malmberg-Penning traps. As an example of this approach, the non-neutral plasma equilibrium in the presence of a weak magnetic tilt is analyzed. Analytical and semianalytical solutions for the electric potential variations inside the trap are found in a paraxial limit for various radial density profiles of the plasma, including the case of global thermal equilibrium. The numerical procedure aimed to obtain self-consistent plasma equilibria for a magnetic field with a large asymmetry is also discussed. The newly developed method can be straightforwardly applied to determine plasma equilibria under the effect of the magnetic perturbations of higher multipolarity (such as, quadrupole or octupole fields)

  5. Antihydrogen Trapped in the ALPHA Experiment

    SciTech Connect

    2011-02-25

    In 2010 the ALPHA collaboration succeeded in trapping antihydrogen atoms for the first time.[i]  Stored antihydrogen promises to be a unique tool for making high precision measurements of the structure of this first anti-atom. Achieving this milestone presented several substantial experimental challenges and this talk will describe how they were overcome.   The unique design features of the ALPHA apparatus will be explained.[ii]  These allow a high intensity positron source and an antiproton imaging detector similar to the one used in the ATHENA[iii] experiment to be combined with an innovative magnet design of the anti-atom trap. This seeks to minimise the perturbations to trapped charged particles which may cause particle loss and heating[iv].   The diagnostic techniques used to measure the diameter, number, density, and temperatures of both plasmas will be presented as will the methods developed to actively compress and cool of both plasma species to sizes and temperatures [v],[vi], [vii] where trapping attempts with a reasonable chance of success can be tried.   The results of the successful trapping experiments will be outlined as well as some subsequent experiments to improve the trapping rate and storage time. [i] 'Trapped antihydrogen' G.B. Andresen et al., Nature 468, 673 (2010) [ii]'A Magnetic Trap for Antihydrogen Confinement' W. Bertsche et al., Nucl. Instr. Meth. Phys. Res. A566, 746 (2006) [iii] Production and detection of cold antihydrogen atoms M.Amoretti et al., Nature 419, 456 (2002). [iv]' Antihydrogen formation dynamics in a multipolar neutral anti-atom trap' G.B. Andresen et al., Phys. Lett. B 685, 141 (2010) [v]' Evaporative Cooling of Antiprotons to Cryogenic Temperatures',                                   G.B. Andresen et al. Phys. Rev. Lett 105, 013003 (2010) [vi]'Compression of Antiproton Clouds for Antihydrogen Trapping' G. B. Andresen et al. Phys. Rev. Lett 100, 203401 (2008) [vii]  'Autoresonant

  6. Antihydrogen Trapped in the ALPHA Experiment

    ScienceCinema

    None

    2011-04-25

    In 2010 the ALPHA collaboration succeeded in trapping antihydrogen atoms for the first time.[i]  Stored antihydrogen promises to be a unique tool for making high precision measurements of the structure of this first anti-atom. Achieving this milestone presented several substantial experimental challenges and this talk will describe how they were overcome.   The unique design features of the ALPHA apparatus will be explained.[ii]  These allow a high intensity positron source and an antiproton imaging detector similar to the one used in the ATHENA[iii] experiment to be combined with an innovative magnet design of the anti-atom trap. This seeks to minimise the perturbations to trapped charged particles which may cause particle loss and heating[iv].   The diagnostic techniques used to measure the diameter, number, density, and temperatures of both plasmas will be presented as will the methods developed to actively compress and cool of both plasma species to sizes and temperatures [v],[vi], [vii] where trapping attempts with a reasonable chance of success can be tried.   The results of the successful trapping experiments will be outlined as well as some subsequent experiments to improve the trapping rate and storage time. [i] 'Trapped antihydrogen' G.B. Andresen et al., Nature 468, 673 (2010) [ii]'A Magnetic Trap for Antihydrogen Confinement' W. Bertsche et al., Nucl. Instr. Meth. Phys. Res. A566, 746 (2006) [iii] Production and detection of cold antihydrogen atoms M.Amoretti et al., Nature 419, 456 (2002). [iv]' Antihydrogen formation dynamics in a multipolar neutral anti-atom trap' G.B. Andresen et al., Phys. Lett. B 685, 141 (2010) [v]' Evaporative Cooling of Antiprotons to Cryogenic Temperatures',                                   G.B. Andresen et al. Phys. Rev. Lett 105, 013003 (2010) [vi]'Compression of Antiproton Clouds for Antihydrogen Trapping' G. B. Andresen et al. Phys. Rev. Lett 100, 203401 (2008) [vii]  'Autoresonant

  7. Global gyrokinetic simulations of trapped-electron mode and trapped-ion mode microturbulence

    NASA Astrophysics Data System (ADS)

    Drouot, T.; Gravier, E.; Reveille, T.; Sarrat, M.; Collard, M.; Bertrand, P.; Cartier-Michaud, T.; Ghendrih, P.; Sarazin, Y.; Garbet, X.

    2015-08-01

    This paper presents a reduced kinetic model, which describes simultaneously trapped-ion (TIM) and trapped-electron (TEM) driven modes. Interestingly, the model enables the study of a full f problem for ion and electron trapped particles at very low numerical cost. The linear growth rate obtained with the full f nonlinear code Trapped Element REduction in Semi Lagrangian Approach is successfully compared with analytical predictions. Moreover, nonlinear results show some basic properties of collisionless TEM and TIM turbulence in tokamaks. A competition between streamer-like structures and zonal flows is observed for TEM and TIM turbulence. Zonal flows are shown to play an important role in suppressing the nonlinear transport and strongly depend on the temperature ratio Te/Ti .

  8. MODIFICATION OF CC WHITEFLY TRAPS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Modifications of CC whitefly traps are in progress to improve their potential for adult whitefly control in greenhouses. Adult catches in the modified CC traps have been increased by 50% by coating trap tops with Tanglefoot and removing the deflector plates. In laboratory studies, installation of ...

  9. Telomerase Repeated Amplification Protocol (TRAP)

    PubMed Central

    Mender, Ilgen; Shay, Jerry W.

    2016-01-01

    Telomeres are found at the end of eukaryotic linear chromosomes, and proteins that bind to telomeres protect DNA from being recognized as double-strand breaks thus preventing end-to-end fusions (Griffith et al., 1999). However, due to the end replication problem and other factors such as oxidative damage, the limited life span of cultured cells (Hayflick limit) results in progressive shortening of these protective structures (Hayflick and Moorhead, 1961; Olovnikov, 1973). The ribonucleoprotein enzyme complex telomerase-consisting of a protein catalytic component hTERT and a functional RNA component hTR or hTERC- counteracts telomere shortening by adding telomeric repeats to the end of chromosomes in ~90% of primary human tumors and in some transiently proliferating stem-like cells (Shay and Wright, 1996; Shay and Wright, 2001). This results in continuous proliferation of cells which is a hallmark of cancer. Therefore, telomere biology has a central role in aging, cancer progression/metastasis as well as targeted cancer therapies. There are commonly used methods in telomere biology such as Telomere Restriction Fragment (TRF) (Mender and Shay, 2015b), Telomere Repeat Amplification Protocol (TRAP) and Telomere dysfunction Induced Foci (TIF) analysis (Mender and Shay, 2015a). In this detailed protocol we describe Telomere Repeat Amplification Protocol (TRAP). The TRAP assay is a popular method to determine telomerase activity in mammalian cells and tissue samples (Kim et al., 1994). The TRAP assay includes three steps: extension, amplification, and detection of telomerase products. In the extension step, telomeric repeats are added to the telomerase substrate (which is actually a non telomeric oligonucleotide, TS) by telomerase. In the amplification step, the extension products are amplified by the polymerase chain reaction (PCR) using specific primers (TS upstream primer and ACX downstream primer) and in the detection step, the presence or absence of telomerase is

  10. Soil conservation through sediment trapping: A review

    NASA Astrophysics Data System (ADS)

    Mekonnen, Mulatie; Keesstra, Saskia; Baartman, Jantiene; Maroulis, Jerry; Stroosnijder, Leo

    2014-05-01

    Preventing the off-site effects of soil erosion is an essential part of good catchment management. Most efforts are in the form of on-site soil and water conservation measures. However, sediment trapping (ST) can be an alternative (or additional) measure to prevent the negative off-site effects of soil erosion. Therefore, not all efforts should focus solely on on-site soil conservation, but also on the safe routing of sediment-laden flows and on creating sites and conditions where sediment can be trapped, preferably in a cost effective or even profitable way. ST can be applied on-site (in-field) and off-site and involves both vegetative and structural measures. The main vegetative measures include grass strips, tree or bush buffers, grassed waterways and restoration of the waterways and their riparian zone; while structural measures include terraces, ponds and check dams. This paper provides a review of studies that have assessed the sediment trapping efficacy (STE) of such vegetative and structural measures. Vegetation type and integration of two or more measures (vegetative as well as structural) are important factors influencing STE. In this review, the STE of most measures was evaluated either individually or in such combinations. In real landscape situations, it is not only important to select the most efficient erosion control measures, but also to determine their optimum location in the catchment. Hence, there is a need for research that shows a more integrated determination of STE at the catchment scale. If integrated measures are implemented at the most appropriate spatial locations within a catchment where they can disconnect landscape units from each other, they will decrease runoff velocity and sediment transport and, subsequently, reduce downstream flooding and sedimentation problems. KEY WORDS: Integrated sediment trapping, sediment trapping efficacy, vegetative, structural, on-site and off-site measures.

  11. Testing the Model of Oscillating Magnetic Traps

    NASA Astrophysics Data System (ADS)

    Szaforz, Ż.; Tomczak, M.

    2015-01-01

    The aim of this paper is to test the model of oscillating magnetic traps (the OMT model), proposed by Jakimiec and Tomczak ( Solar Phys. 261, 233, 2010). This model describes the process of excitation of quasi-periodic pulsations (QPPs) observed during solar flares. In the OMT model energetic electrons are accelerated within a triangular, cusp-like structure situated between the reconnection point and the top of a flare loop as seen in soft X-rays. We analyzed QPPs in hard X-ray light curves for 23 flares as observed by Yohkoh. Three independent methods were used. We also used hard X-ray images to localize magnetic traps and soft X-ray images to diagnose thermal plasmas inside the traps. We found that the majority of the observed pulsation periods correlates with the diameters of oscillating magnetic traps, as was predicted by the OMT model. We also found that the electron number density of plasma inside the magnetic traps in the time of pulsation disappearance is strongly connected with the pulsation period. We conclude that the observations are consistent with the predictions of the OMT model for the analyzed set of flares.

  12. Radial cold trap

    DOEpatents

    Grundy, Brian R.

    1981-01-01

    The radial cold trap comprises a housing having a plurality of mesh bands disposed therein. The mesh bands comprise concentrically arranged bands of mesh with the mesh specific surface area of each band increasing from the outermost mesh band to the innermost mesh band. An inlet nozzle is attached to the outside section of the housing while an outlet nozzle is attached to the inner portion of the housing so as to be concentrically connected to the innermost mesh band. An inlet baffle having orifices therein may be disposed around the outermost mesh band and within the housing for directing the flow of the fluid from the inlet nozzle to the outermost mesh band in a uniform manner. The flow of fluid passes through each consecutive mesh band and into the outlet nozzle. The circular pattern of the symmetrically arranged mesh packing allows for better utilization of the entire cold trap volume.

  13. Radial cold trap

    DOEpatents

    Grundy, B.R.

    1981-09-29

    The radial cold trap comprises a housing having a plurality of mesh bands disposed therein. The mesh bands comprise concentrically arranged bands of mesh with the mesh specific surface area of each band increasing from the outermost mesh band to the innermost mesh band. An inlet nozzle is attached to the outside section of the housing while an outlet nozzle is attached to the inner portion of the housing so as to be concentrically connected to the innermost mesh band. An inlet baffle having orifices therein may be disposed around the outermost mesh band and within the housing for directing the flow of the fluid from the inlet nozzle to the outermost mesh band in a uniform manner. The flow of fluid passes through each consecutive mesh band and into the outlet nozzle. The circular pattern of the symmetrically arranged mesh packing allows for better utilization of the entire cold trap volume. 2 figs.

  14. Filter vapor trap

    DOEpatents

    Guon, Jerold

    1976-04-13

    A sintered filter trap is adapted for insertion in a gas stream of sodium vapor to condense and deposit sodium thereon. The filter is heated and operated above the melting temperature of sodium, resulting in a more efficient means to remove sodium particulates from the effluent inert gas emanating from the surface of a liquid sodium pool. Preferably the filter leaves are precoated with a natrophobic coating such as tetracosane.

  15. Light-trapping concentrator cells

    NASA Astrophysics Data System (ADS)

    Keavney, Christopher J.; Geoffroy, Leo M.; Sanfacon, Michael M.; Tobin, Stephen P.

    1989-11-01

    The objective was to develop a thin, light-trapping silicon concentrator solar cell using a new structure, the cross-grooved cell. A process was developed for fabricating V-grooves on both sides of thin silicon wafers, the grooves on one side being perpendicular to those on the other side. A way to minimize flat spots at the tops of the V-grooves was discovered. The theoretical light-trapping superiority of the cross-grooved structure was verified. A reduction was also demonstrated in grid line obscuration for grid lines running parallel to the V-grooves due to light reflection into the cell. High short-circuit current densities were achieved for p-i-n concentrator cells with the cross-grooved structure, proving the concept. The best efficiencies achieved were 18 percent at concentration, compared to 20 percent for a conventional planar low-resistivity cell. Recombination in the full-area emitter was identified as the major intrinsic loss mechanism in these thin, high-resistivity bifacial cells. Recombination on the emitter limits Voc and fill factor, and also leads to a large sublinearity of short-circuit current with light intensity. Reduction of the junction area is a major recommendation for future work. In addition, there were persistent problems with ohmic contacts and maintaining high minority-carrier lifetime during processing. It is believed that these problems can be solved, and that the cross-grooved cell is a viable approach to the limit-efficiency silicon solar cell. This report covers research conducted between March 1987 and July 1989.

  16. Effect of interface and bulk traps on the C–V characterization of a LPCVD-SiNx/AlGaN/GaN metal-insulator-semiconductor structure

    NASA Astrophysics Data System (ADS)

    Bao, Qilong; Huang, Sen; Wang, Xinhua; Wei, Ke; Zheng, Yingkui; Li, Yankui; Yang, Chengyue; Jiang, Haojie; Li, Junfeng; Hu, Anqi; Yang, Xuelin; Shen, Bo; Liu, Xinyu; Zhao, Chao

    2016-06-01

    Silicon nitride (SiNx) film grown by low-pressure chemical vapor deposition (LPCVD) is utilized as a gate dielectric for AlGaN/GaN metal-insulator-semiconductor high-electron-mobility transistors (MIS-HEMTs). Trap distribution at the gate-dielectric/III-nitrides interface is characterized by a temperature-dependent ac-capacitance technique. The extracted interface state density D it decreases from 2.92 × 1013 to 1.59 × 1012 cm‑2 eV‑1 as the energy level depth (E C-E T) increases from 0.29 to 0.50 eV, and then levels off to E C-E T = 0.80 eV. Capacitance-mode deep level transient spectroscopy (C-DLTS) and energy band diagram simulations reveal that deep levels with E C-E T > 0. 83 eV are responsible for the dispersion of capacitances at high temperature (>125 °C) and low frequencies (<1 kHz). A high-resolution transmission electron microscope (TEM) reveals that re-oxidation of the RCA-treated AlGaN barrier surface may be responsible for the relatively high density of shallow states at the LPCVD-SiNx/III-nitride interface.

  17. A Pneumatic Actuated Microfluidic Beads-Trapping Device

    SciTech Connect

    Shao, Guocheng; Cai, Ziliang; Wang, Jun; Wang, Wanjun; Lin, Yuehe

    2011-08-20

    The development of a polydimethylsiloxane (PDMS) microfluidic microbeads trapping device is reported in this paper. Besides fluid channels, the proposed device includes a pneumatic control chamber and a beads-trapping chamber with a filter array structure. The pneumatic flow control chamber and the beads-trapping chamber are vertically stacked and separated by a thin membrane. By adjusting the pressure in the pneumatic control chamber, the membrane can either be pushed against the filter array to set the device in trapping mode or be released to set the device in releasing mode. In this paper, a computational fluid dynamics simulation was conducted to optimize the geometry design of the filter array structure; the device fabrication was also carried out. The prototype device was tested and the preliminary experimental results showed that it can be used as a beads-trapping unit for various biochemistry and analytical chemistry applications, especially for flow injection analysis systems.

  18. Trapping particles using waveguide-coupled gold bowtie plasmonic tweezers.

    PubMed

    Lin, Pin-Tso; Chu, Heng-Yi; Lu, Tsan-Wen; Lee, Po-Tsung

    2014-12-21

    We propose and demonstrate a trapping configuration integrating coupled waveguides and gold bowtie structures to form near-field plasmonic tweezers. Compared with excitation from the top, waves coupled through the waveguide can excite specific bowties on the waveguide and trap particles precisely. Thus this scheme is more efficient and compact, and will assist the circuit design on a chip. With lightning rod and gap effects, the gold bowtie structures can generate highly concentrated resonant fields and induce trapping forces as strong as 652 pN W(-1) on particles with diameters as small as 20 nm. This trapping capability is investigated numerically and verified experimentally with observations of the transport, trapping, and release of particles in the system. PMID:25288366

  19. Al2O3 influence on structural, elastic, thermal properties of Yb(3+) doped Ba-La-tellurite glass: evidence of reduction in self-radiation trapping at 1μm emission.

    PubMed

    Balaji, S; Biswas, K; Sontakke, A D; Gupta, G; Ghosh, D; Annapurna, K

    2014-12-10

    Ba-La-tellurite glasses doped with Yb(3+) ions have been prepared through melt quenching technique by modifying their composition with the inclusion of varied concentration of Al2O3 to elucidate its effects on glass structural, elastic, thermal properties and Yb(3+) ion NIR luminescence performance. The FTIR spectral analysis indicates Al2O3 addition is promoting the conversion of BOs from NBOs which have been generated during the process of depolymerisation of main glass forming TeO4 units. The elastic properties of the glass revealed an improved rigidity of the glass network on addition of Al2O3. In concurrence to this, differential thermal analysis showed an increase in glass transition temperature with improved thermal stability factor. Also, Yb(3+) fluorescence dynamics demonstrated that, Al2O3 inclusion helps in restraining the detrimental radiation trapping of ∼1μm emission. PMID:24954756

  20. Magnetic trap for thulium atoms

    SciTech Connect

    Sukachev, D D; Sokolov, A V; Chebakov, K A; Akimov, A V; Kolachevskii, N N; Sorokin, Vadim N

    2011-08-31

    For the first time ultra-cold thulium atoms were trapped in a magnetic quadrupole trap with a small field gradient (20 Gs cm{sup -1}). The atoms were loaded from a cloud containing 4x10{sup 5} atoms that were preliminarily cooled in a magneto-optical trap to the sub-Doppler temperature of 80 {mu}K. As many as 4x10{sup 4} atoms were trapped in the magnetic trap at the temperature of 40 {mu}K. By the character of trap population decay the lifetime of atoms was determined (0.5 s) and an upper estimate was obtained for the rate constant of inelastic binary collisions for spin-polarised thulium atoms in the ground state (g{sub in} < 10{sup -11}cm{sup 3} s{sup -1}). (magnetic traps)

  1. Cenozoic diapiric traps in eastern China

    SciTech Connect

    Xie-Pei, W.; Qi, F.; Jia-Hua, Z.

    1985-12-01

    Diapiric traps, including diapirs of salt and mud or igneous intrusives, have recently been found in many places in the Cenozoic petroliferous basins in eastern China, and most of them produce oil and gas. During the Eocene-early Oligocene, salt-lake basins evolved extensively. Plastic source materials for diapirism were deposited in the basins in great thickness. We have found that the diapiric traps of salt and mud in eastern China are unpierced or slightly pierced structures. The diapiric materials are a mixture of salt, gypsum, and mudstone, but mudstone is the main component of the plastic bodies. Based on an analysis of the structural features of the diapirs and the regional tectonic setting, we believe that the diapiric traps are caused by a combination of horizontal stress due to regional tectonic movement and vertical stress due to gravitational instability. Some diabase diapirs are arranged in a series of small anticlinal traps along the regional faults in the Subei basin of Jiangsu province. Oil and gas have been found in certain of these diapirs. 16 figures.

  2. Microtrap on a concave grating reflector for atom trapping

    NASA Astrophysics Data System (ADS)

    Zhang, Hui; Li, Tao; Yin, Ya-Ling; Li, Xing-Jia; Xia, Yong; Yin, Jian-Ping

    2016-08-01

    We propose a novel scheme of optical confinement for atoms by using a concave grating reflector. The two-dimension grating structure with a concave surface shape exhibits strong focusing ability under radially polarized illumination. Especially, the light intensity at the focal point is about 100 times higher than that of the incident light. Such a focusing optical field reflected from the curved grating structure can provide a deep potential to trap cold atoms. We discuss the feasibility of the structure serving as an optical dipole trap. Our results are as follows. (i) Van der Waals attraction potential to the surface of the structure has a low effect on trapped atoms. (ii) The maximum trapping potential is ∼ 1.14 mK in the optical trap, which is high enough to trap cold 87Rb atoms from a standard magneto-optical trap with a temperature of 120 μK, and the maximum photon scattering rate is lower than 1/s. (iii) Such a microtrap array can also manipulate and control cold molecules, or microscopic particles. Project supported by the National Natural Science Foundation of China (Grant Nos. 11374100, 91536218, and 11274114) and the Natural Science Foundation of Shanghai Municipality, China (Grant No. 13ZR1412800).

  3. The trapped mercury ion frequency standard

    NASA Technical Reports Server (NTRS)

    Mcguire, M. D.

    1977-01-01

    Singly ionized mercury atoms have a structure similar to neutral alkali atoms. They can be maintained as ions for very long times in an RF quadrupole ion trap. Thus, their ground state hyperfine structure can be used to make a frequency standard using optical pumping techniques similar to the well-known rubidium standard. The mass 199 isotope of mercury has an ionic hyperfine structure of 40.5 GHz. In a trap system a linewidth of 10 Hz has been measured. An expression is presented for the short-term stability of a proposed mercury standard as set by the achieved signal to noise ratio. There is prospect of further improvement. Long-term stability is affected by second order doppler effect, and by pressure, light, and Stark shifts. However, these appear either sufficiently small or sufficiently controlable that the proposed mercury ion standard would be competitive with existing standards.

  4. Diesel particulate trap mounting system

    SciTech Connect

    Miller, P.R.

    1992-01-21

    This patent describes a particulate trap assembly. It comprises an outer housing having a gas inlet and a gas outlet and a passageway interconnecting the gas inlet and the gas outlet; a particulate trapping means located within the passageway of the housing for trapping particles entrained in gas passing through the passageway, the passageway and the particulate trapping means having circumferential extents which fall within relatively large predetermined manufacturing tolerances respectively; tourniquet means surrounding the particulate trapping means for applying a predetermined radial pressure to the trapping means which is substantially independent of the circumferential extents of the passageway and the including an encircling element having a selectably adjustable circumferential extent for permitting the tourniquet means to conform to the circumferential extent of the particulate trapping means when mounted in compressive relationship about the particulate trapping means, and mounting means for retaining the particulate trapping means radially and axially within the passageway in a manner which imposes no further substantial radial compressive force to the particulate trapping means.

  5. Atom trap trace analysis

    SciTech Connect

    Lu, Z.-T.; Bailey, K.; Chen, C.-Y.; Du, X.; Li, Y.-M.; O'Connor, T. P.; Young, L.

    2000-05-25

    A new method of ultrasensitive trace-isotope analysis has been developed based upon the technique of laser manipulation of neutral atoms. It has been used to count individual {sup 85}Kr and {sup 81}Kr atoms present in a natural krypton sample with isotopic abundances in the range of 10{sup {minus}11} and 10{sup {minus}13}, respectively. The atom counts are free of contamination from other isotopes, elements,or molecules. The method is applicable to other trace-isotopes that can be efficiently captured with a magneto-optical trap, and has a broad range of potential applications.

  6. Cryogenic resonator design for trapped ion experiments in Paul traps

    NASA Astrophysics Data System (ADS)

    Brandl, M. F.; Schindler, P.; Monz, T.; Blatt, R.

    2016-06-01

    Trapping ions in Paul traps require high radio frequency voltages, which are generated using resonators. When operating traps in a cryogenic environment, an in-vacuum resonator showing low loss is crucial to limit the thermal load to the cryostat. In this study, we present a guide for the design and production of compact, shielded cryogenic resonators. We produced and characterized three different types of resonators and furthermore demonstrate efficient impedance matching of these resonators at cryogenic temperatures.

  7. Cenozoic diapiric traps in eastern China

    SciTech Connect

    Qi, F.; Xie-Pei, W.; Jia-Hua, Z.

    1984-04-01

    Genetically, there are 2 types of Cenozoic diapiric traps in the oil fields in eastern China. One type is produced by cold diapirism owing to the rise of evaporites and soft mudstone. This type can be divided into 3 patterns. The first pattern is the faulted ridge with 1000 m (3300 ft) closure and flanks dipping up to 30/sup 0/. A complex graben system is developed on the top. The amplitude of the core of the anticline is about 3000 m (9800 ft). The Xiangzheng structure in the Shengli oil field and the Wang-cung structure in the Qian-jiang depression are examples. The second pattern is the gentle anticline or dome with 50-300 m (160-985 ft) closure and 3/sup 0/-10/sup 0/ dip on the flanks. The incompetent strata beneath it are about 1000 m (3300 ft) thick. The Tuocung-Shengli structure in the Shengli oil field is an example. The third pattern is a nose-like structure with less than 50 m (160 ft) closure. This pattern is usually located near the zero edge of incompetent strata. The Serniusi structure in the Dagang oil field is an example. Another type of Cenozoic diapiric trap results from hot diapirism associated with the intrusion of gabbro or diabase. Such traps are typically small, round domes. The dip of the flanking strata generally increases with depth as the diapir is approached. A graben system is developed on top of the diapir. The distribution of these traps is related usually to regional fault zones and coincides with the distribution of the magmatism. The Matouzung structure in the Jinhu depression is one of the examples.

  8. Cenozoic diapiric traps in eastern China

    SciTech Connect

    Qi, F.; Xie-Pei, W.; Jia-Hua, Z.

    1984-04-01

    Genetically, there are 2 types of Cenozoic diapiric traps in the oil fields in eastern China. One type is produced by cold diapirism owing to the rise of evaporites and soft mudstone. This type can be divided into 3 patterns. The first pattern is the faulted ridge with 1000 m (3300 ft) closure and flanks dipping up to 30/sup 0/. A complex graben system is developed on the top. The amplitude of the core of the anticline is about 3000 m (9800 ft). The Xiangzheng structure in the Shengli oil field and the Wang-atcung structure in the Qian-jiang depression are examples. The second pattern is the gentle anticline or dome with 50-300 m (160-985 ft) closure and 3/sup 0/-10/sup 0/ dip on the flanks. The incompetent strata beneath it are about 1000 m (3300 ft) thick. The Tuocung-Shengli structure in the Shengli oil field is an example. The third pattern is a nose-like structure with less than 50 m (160 ft) closure. This pattern is usually located near the zero edge of incompetent strata. The Serniusi structure in the Dagang oil field is an example. Another type of Cenozoic diapiric trap results from hot diapirism associated with the intrusion of gabbro or diabase. Such traps are typically small, round domes. The dip of the flanking strata generally increases with depth as the diapir is approached. A graben system is developed on top of the diapir. The distribution of these traps is related usually to regional fault zones and coincides with the distribution of the magmatism. The Matouzung structure in the Jinhu depression is one of the examples.

  9. A microfluidic device enabling high-efficiency single cell trapping.

    PubMed

    Jin, D; Deng, B; Li, J X; Cai, W; Tu, L; Chen, J; Wu, Q; Wang, W H

    2015-01-01

    Single cell trapping increasingly serves as a key manipulation technique in single cell analysis for many cutting-edge cell studies. Due to their inherent advantages, microfluidic devices have been widely used to enable single cell immobilization. To further improve the single cell trapping efficiency, this paper reports on a passive hydrodynamic microfluidic device based on the "least flow resistance path" principle with geometry optimized in line with corresponding cell types. Different from serpentine structure, the core trapping structure of the micro-device consists of a series of concatenated T and inverse T junction pairs which function as bypassing channels and trapping constrictions. This new device enhances the single cell trapping efficiency from three aspects: (1) there is no need to deploy very long or complicated channels to adjust flow resistance, thus saving space for each trapping unit; (2) the trapping works in a "deterministic" manner, thus saving a great deal of cell samples; and (3) the compact configuration allows shorter flowing path of cells in multiple channels, thus increasing the speed and throughput of cell trapping. The mathematical model of the design was proposed and optimization of associated key geometric parameters was conducted based on computational fluid dynamics (CFD) simulation. As a proof demonstration, two types of PDMS microfluidic devices were fabricated to trap HeLa and HEK-293T cells with relatively significant differences in cell sizes. Experimental results showed 100% cell trapping and 90% single cell trapping over 4 × 100 trap sites for these two cell types, respectively. The space saving is estimated to be 2-fold and the cell trapping speed enhancement to be 3-fold compared to previously reported devices. This device can be used for trapping various types of cells and expanded to trap cells in the order of tens of thousands on 1-cm(2) scale area, as a promising tool to pattern large-scale single cells on specific

  10. Computer simulations of ions in radio-frequency traps

    NASA Technical Reports Server (NTRS)

    Williams, A.; Prestage, J. D.; Maleki, L.; Djomehri, J.; Harabetian, E.

    1990-01-01

    The motion of ions in a trapped-ion frequency standard affects the stability of the standard. In order to study the motion and structures of large ion clouds in a radio-frequency (RF) trap, a computer simulation of the system that incorporates the effect of thermal excitation of the ions was developed. Results are presented from the simulation for cloud sizes up to 512 ions, emphasizing cloud structures in the low-temperature regime.

  11. Near-yrast structure of {sup 149}Pr

    SciTech Connect

    Rzaca-Urban, T.; Urban, W.; Pinston, J. A.; Simpson, G. S.; Ahmad, I.

    2010-12-15

    The neutron-rich nucleus {sup 149}Pr has been studied by means of prompt and delayed {gamma}-ray spectroscopy using the EUROGAM2 and Gammasphere arrays of Ge detectors. New spins have been assigned to a previously reported band and it is interpreted as having a h{sub 11/2} proton structure, from a comparison with quasiparticle-rotor model calculations. The strength of octupole correlations in odd-Z nuclei of the region is discussed.

  12. Modulating TRAP-mediated transcription termination by AT during transcription of the leader region of the Bacillus subtilis trp operon.

    PubMed

    Sharma, Shraddha; Gollnick, Paul

    2014-05-01

    An 11-subunit protein called trp RNA binding Attenuation Protein (TRAP) controls attenuation of the tryptophan biosynthetic (trpEDCFBA) operon in Bacillus subtilis. Tryptophan-activated TRAP binds to 11 (G/U)AG repeats in the 5' leader region of trp mRNAs, and downregulates expression of the operon by promoting transcription termination prior to the structural genes. Anti-TRAP (AT) is an antagonist that binds to tryptophan-activated TRAP and prevents TRAP from binding to RNA, thereby upregulating expression of the trp genes. AT forms trimers, and multiple trimers bind to a TRAP 11mer. It is not known how many trimers must bind to TRAP in order to interfere with RNA binding. Studies of isolated TRAP and AT showed that AT can prevent TRAP from binding to the trp leader RNA but cannot dissociate a pre-formed TRAP-RNA complex. Here, we show that AT can prevent TRAP-mediated termination of transcription by inducing dissociation of TRAP from the nascent RNA when it has bound to fewer than all 11 (G/U)AG repeats. The 5'-most region of the TRAP binding site in the nascent transcript is most susceptible to dissociation from TRAP. We also show that one AT trimer bound to TRAP 11mer reduces the affinity of TRAP for RNA and eliminates TRAP-mediated transcription termination in vitro. PMID:24682818

  13. The crystal structure of Erwinia amylovora levansucrase provides a snapshot of the products of sucrose hydrolysis trapped into the active site.

    PubMed

    Wuerges, Jochen; Caputi, Lorenzo; Cianci, Michele; Boivin, Stephane; Meijers, Rob; Benini, Stefano

    2015-09-01

    Levansucrases are members of the glycoside hydrolase family and catalyse both the hydrolysis of the substrate sucrose and the transfer of fructosyl units to acceptor molecules. In the presence of sufficient sucrose, this may either lead to the production of fructooligosaccharides or fructose polymers. Aim of this study is to rationalise the differences in the polymerisation properties of bacterial levansucrases and in particular to identify structural features that determine different product spectrum in the levansucrase of the Gram-negative bacterium Erwinia amylovora (Ea Lsc, EC 2.4.1.10) as compared to Gram-positive bacteria such as Bacillus subtilis levansucrase. Ea is an enterobacterial pathogen responsible for the Fire Blight disease in rosaceous plants (e.g., apple and pear) with considerable interest for the agricultural industry. The crystal structure of Ea Lsc was solved at 2.77 Å resolution and compared to those of other fructosyltransferases from Gram-positive and Gram-negative bacteria. We propose the structural features, determining the different reaction products, to reside in just a few loops at the rim of the active site funnel. Moreover we propose that loop 8 may have a role in product length determination in Gluconacetobacter diazotrophicus LsdA and Microbacterium saccharophilum FFase. The Ea Lsc structure shows for the first time the products of sucrose hydrolysis still bound in the active site. PMID:26208466

  14. Gated charged-particle trap

    DOEpatents

    Benner, W. Henry

    1999-01-01

    The design and operation of a new type of charged-particle trap provides simultaneous measurements of mass, charge, and velocity of large electrospray ions. The trap consists of a detector tube mounted between two sets of center-bored trapping plates. Voltages applied to the trapping plates define symmetrically-opposing potential valleys which guide axially-injected ions to cycle back and forth through the charge-detection tube. A low noise charge-sensitive amplifier, connected to the tube, reproduces the image charge of individual ions as they pass through the detector tube. Ion mass is calculated from measurement of ion charge and velocity following each passage through the detector.

  15. Trapping of interstitials in metals

    SciTech Connect

    Wert, C.A.; Frank, R.C.

    1983-01-01

    The term trapping is used extensively to refer to the fact that interstitial atoms often find interstices associated with lattice imperfections to be energetically preferable to normal sites. This preference results in a delay of diffusion of interstitial atoms near these sites. As understanding of the details of lattice imperfections has improved, understanding of the effect of traps on the diffusion process has increased. Trapping is often illustrated by the use of a potential energy diagram. This simple model is characterized by a potential energy well deeper than those of surrounding interstitial sites. The energy required for the interstitial to jump into the trap is the same as that required for jumping into other adjacent interstitial sites, but that required for jumping out is greater. The additional energy required to leave the site is often designated as the trap binding energy, E/sub B/. Potential energy diagrams appropriate for most traps in metals are likely to be more complicated, but this simple model is a starting point for more sophisticated models of trapping. Imperfections may occasionally produce interstitial sites less favorable than normal sites and thus be less preferred. Little experimental exploration of this anti-trapping phenomenon has been carried out, however. Developments in understanding at various levels of trapping of interstitial impurities by lattice imperfections are examined.

  16. DNA Separation Using Photoelectrophoretic Traps

    SciTech Connect

    Braiman, Avital; Thundat, Thomas George; Rudakov, Fedor M

    2011-01-01

    In our recent publications we presented a design that allows formation of highly localized and optically controlled electrophoretic traps. 1,2 We demonstrated that electrophoretic traps can be utilized for biomolecule photoconcentration, optically directed transport, and separation by size. 1,2 In the current publication we suggest a hybrid design for biomolecule separation which implements electrophoretic traps in tandem with well-established electrophoretic techniques. We perform Monte Carlo simulations that demonstrate that the resolution of well-established electrophoretic techniques can be greatly enhanced by introducing photoelectrophoretic traps.

  17. Trapped-electron runaway effect

    NASA Astrophysics Data System (ADS)

    Nilsson, E.; Decker, J.; Fisch, N. J.; Peysson, Y.

    2015-08-01

    In a tokamak, trapped electrons subject to a strong electric field cannot run away immediately, because their parallel velocity does not increase over a bounce period. However, they do pinch toward the tokamak center. As they pinch toward the center, the trapping cone becomes more narrow, so eventually they can be detrapped and run away. When they run away, trapped electrons will have a very different signature from circulating electrons subject to the Dreicer mechanism. The characteristics of what are called trapped-electron runaways are identified and quantified, including their distinguishable perpendicular velocity spectrum and radial extent.

  18. Traps and seals II. Stratigraphic/capillary traps

    SciTech Connect

    Foster, N.H.; Beaumont, E.A.

    1988-01-01

    This text is a reprint belonging to a series of reprint volumes which in turn are part of the Treatise of Petroleum Geology. This volume contains papers that describe different stratigraphically controlled trap types, the preservation of porosity, and the importance of capillarity in trapping hydrocarbons.

  19. The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein.

    PubMed

    Valbuzzi, Angela; Gollnick, Paul; Babitzke, Paul; Yanofsky, Charles

    2002-03-22

    In Bacillus subtilis, the trp RNA-binding attenuation protein (TRAP) regulates expression of genes involved in tryptophan metabolism in response to the accumulation of l-tryptophan. Tryptophan-activated TRAP negatively regulates expression by binding to specific mRNA sequences and either promoting transcription termination or blocking translation initiation. Conversely, the accumulation of uncharged tRNA(Trp) induces synthesis of an anti-TRAP protein (AT), which forms a complex with TRAP and inhibits its activity. In this report, we investigate the structural features of TRAP required for AT recognition. A collection of TRAP mutant proteins was examined that were known to be partially or completely defective in tryptophan binding and/or RNA binding. Analyses of AT interactions with these proteins were performed using in vitro transcription termination assays and cross-linking experiments. We observed that TRAP mutant proteins that had lost the ability to bind RNA were no longer recognized by AT. Our findings suggest that AT acts by competing with messenger RNA for the RNA binding domain of TRAP. B. subtilis AT was also shown to interact with TRAP proteins from Bacillus halodurans and Bacillus stearothermophilus, implying that the structural elements required for AT recognition are conserved in the TRAP proteins of these species. Analyses of AT interaction with B. stearothermophilus TRAP at 60 degrees C demonstrated that AT is active at this elevated temperature. PMID:11786553

  20. 50 CFR 697.19 - Trap limits and trap tag requirements for vessels fishing with lobster traps.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... vessels fishing with lobster traps. 697.19 Section 697.19 Wildlife and Fisheries FISHERY CONSERVATION AND... requirements for vessels fishing with lobster traps. (a) Area 1 trap limits. The Area 1 trap limit is 800 traps. Federally permitted lobster fishing vessels shall not fish with, deploy in, possess in, or haul back...

  1. A Compact Structure of Cytochrome c Trapped in a Lysine-Ligated State: Loop Refolding and Functional Implications of a Conformational Switch.

    PubMed

    Amacher, Jeanine F; Zhong, Fangfang; Lisi, George P; Zhu, Michael Q; Alden, Stephanie L; Hoke, Kevin R; Madden, Dean R; Pletneva, Ekaterina V

    2015-07-01

    It has been suggested that the alkaline form of cytochrome c (cyt c) regulates function of this protein as an electron carrier in oxidative phosphorylation and as a peroxidase that reacts with cardiolipin (CL) during apoptosis. In this form, Met80, the native ligand to the heme iron, is replaced by a Lys. While it has become clear that the structure of cyt c changes, the extent and sequence of conformational rearrangements associated with this ligand replacement remain a subject of debate. Herein we report a high-resolution crystal structure of a Lys73-ligated cyt c conformation that reveals intricate change in the heme environment upon this switch in the heme iron ligation. The structure is surprisingly compact, and the heme coordination loop refolds into a β-hairpin with a turn formed by the highly conserved residues Pro76 and Gly77. Repositioning of residue 78 modifies the intraprotein hydrogen-bonding network and, together with adjustments of residues 52 and 74, increases the volume of the heme pocket to allow for insertion of one of the CL acyl moieties next to Asn52. Derivatization of Cys78 with maleimide creates a solution mimic of the Lys-ligated cyt c that has enhanced peroxidase activity, adding support for a role of the Lys-ligated cyt c in the apoptotic mechanism. Experiments with the heme peptide microperoxidase-8 and engineered model proteins provide a thermodynamic rationale for the switch to Lys ligation upon perturbations in the protein scaffold. PMID:26038984

  2. A single trapped ion in a finite range trap

    SciTech Connect

    Bagheri Harouni, M.; Davoudi Darareh, M.

    2011-04-15

    Research Highlights: > We present a method to describe dynamics of an ion confined in a finite size trap. > The trap is modeled with a potential in the context of an f-deformed oscillator. > The ion exhibits nonclassical properties such as squeezing and quantum interference. > . > Also this system can be used to generate highly excited motional Fock state. > The Hilbert space size effects and nano traps can be investigated by this model. - Abstract: This paper presents a method to describe dynamics of an ion confined in a realistic finite range trap. We model this realistic potential with a solvable one and we obtain dynamical variables (raising and lowering operators) of this potential. We consider coherent interaction of this confined ion in a finite range trap and we show that its center-of-mass motion steady state is a special kind of nonlinear coherent states. Physical properties of this state and their dependence on the finite range of potential are studied.

  3. Cryogenic ion trapping systems with surface-electrode traps

    NASA Astrophysics Data System (ADS)

    Antohi, P. B.; Schuster, D.; Akselrod, G. M.; Labaziewicz, J.; Ge, Y.; Lin, Z.; Bakr, W. S.; Chuang, I. L.

    2009-01-01

    We present two simple cryogenic rf ion trap systems in which cryogenic temperatures and ultra high vacuum pressures can be reached in as little as 12 h. The ion traps are operated either in a liquid helium bath cryostat or in a low vibration closed cycle cryostat. The fast turn around time and availability of buffer gas cooling made the systems ideal for testing surface-electrode ion traps. The vibration amplitude of the closed cycled cryostat was found to be below 106 nm. We evaluated the systems by loading surface-electrode ion traps with S88r+ ions using laser ablation, which is compatible with the cryogenic environment. Using Doppler cooling we observed small ion crystals in which optically resolved ions have a trapped lifetime over 2500 min.

  4. Effect of trapping in degenerate quantum plasmas

    SciTech Connect

    Shah, H. A.; Qureshi, M. N. S.; Tsintsadze, N.

    2010-03-15

    In the present work we consider the effect of trapping as a microscopic process in a plasma consisting of quantum electrons and nondegenerate ions. The formation of solitary structures is investigated in two cases: first when the electrons are fully degenerate and second when small temperature effects are taken into account. It is seen that not only rarefactive but coupled rarefactive and compressive solitons are obtained under different temperature conditions.

  5. Segmented trapped vortex cavity

    NASA Technical Reports Server (NTRS)

    Grammel, Jr., Leonard Paul (Inventor); Pennekamp, David Lance (Inventor); Winslow, Jr., Ralph Henry (Inventor)

    2010-01-01

    An annular trapped vortex cavity assembly segment comprising includes a cavity forward wall, a cavity aft wall, and a cavity radially outer wall there between defining a cavity segment therein. A cavity opening extends between the forward and aft walls at a radially inner end of the assembly segment. Radially spaced apart pluralities of air injection first and second holes extend through the forward and aft walls respectively. The segment may include first and second expansion joint features at distal first and second ends respectively of the segment. The segment may include a forward subcomponent including the cavity forward wall attached to an aft subcomponent including the cavity aft wall. The forward and aft subcomponents include forward and aft portions of the cavity radially outer wall respectively. A ring of the segments may be circumferentially disposed about an axis to form an annular segmented vortex cavity assembly.

  6. Equatorially trapped plasma populations

    NASA Technical Reports Server (NTRS)

    Olsen, R. C.

    1981-01-01

    The SCATHA observations of the equatorially trapped plasmas are presented in order to emphasize the importance of making measurements at the equator. The UCSD plasma detector and the GSFC electric field experiment are described, as are the pertinent characteristics of the magnetometer and mass spectrometers. The electron distribution reveals a width of 20 deg to 60 deg, narrowing with increasing energy. The 20- to 100-eV ion fluxes typically exhibit temperatures in the 20to 50-eV range and densities of 1-10 per cu cm. The electron population typically ranges from 50 to 500 eV, with temperatures of 100-200 eV and densities also in the 1-10 per cu cm range. Field-aligned populations of lower energy are occasionally found in both ions and electrons at the same location.

  7. Structural Definition of Trehalose 6-Monomycolates and Trehalose 6,6'-Dimycolates from the Pathogen Rhodococcus equi by Multiple-Stage Linear Ion-Trap Mass Spectrometry with Electrospray Ionization

    NASA Astrophysics Data System (ADS)

    Hsu, Fong-Fu; Wohlmann, Jens; Turk, John; Haas, Albert

    2011-12-01

    The cell wall of the pathogenic bacterium Rhodococcus equi ( R. equi) contains abundant trehalose monomycolate (TMM) and trehalose dimycolate (TDM), the glycolipids bearing mycolic acids. Here, we describe multiple-stage (MS n ) linear ion-trap (LIT) mass spectrometric approaches toward structural characterization of TMM and TDM desorbed as [M + Alk]+ (Alk = Na, Li) and as [M + X]- (X = CH3CO2, HCO2) ions by electrospray ionization (ESI). Upon MS n ( n = 2, 3, 4) on the [M + Alk]+ or the [M + X]- adduct ions of TMM and TDM, abundant structurally informative fragment ions are readily available, permitting fast assignment of the length of the meromycolate chain and of the α-branch on the mycolyl residues. In this way, structures of TMM and TDM isolated from pathogenic R. equi strain 103 can be determined. Our results indicate that the major TMM and TDM molecules possess 6, and/or 6'-mycolyl groups that consist of mainly C14 and C16 α-branches with meromycolate branches ranging from C18 to C28, similar to the structures of the unbound mycolic acids found in the cell envelope. Up to 60 isobaric isomers varying in chain length of the α-branch and of the meromycolate backbone were observed for some of the TDM species in the mixture. This mass spectrometric approach provides a direct method that affords identification of various TMM and TDM isomers in a mixture of which the complexity of this lipid class has not been previously reported using other analytical methods.

  8. Structural definition of trehalose 6-monomycolates and trehalose 6,6'-dimycolates from the pathogen Rhodococcus equi by multiple-stage linear ion-trap mass spectrometry with electrospray ionization.

    PubMed

    Hsu, Fong-Fu; Wohlmann, Jens; Turk, John; Haas, Albert

    2011-12-01

    The cell wall of the pathogenic bacterium Rhodococcus equi (R. equi) contains abundant trehalose monomycolate (TMM) and trehalose dimycolate (TDM), the glycolipids bearing mycolic acids. Here, we describe multiple-stage (MS(n)) linear ion-trap (LIT) mass spectrometric approaches toward structural characterization of TMM and TDM desorbed as [M + Alk](+) (Alk = Na, Li) and as [M + X](-) (X = CH(3)CO(2), HCO(2)) ions by electrospray ionization (ESI). Upon MS(n) (n=2, 3, 4) on the [M + Alk](+) or the [M + X](-) adduct ions of TMM and TDM, abundant structurally informative fragment ions are readily available, permitting fast assignment of the length of the meromycolate chain and of the α-branch on the mycolyl residues. In this way, structures of TMM and TDM isolated from pathogenic R. equi strain 103 can be determined. Our results indicate that the major TMM and TDM molecules possess 6, and/or 6'-mycolyl groups that consist of mainly C14 and C16 α-branches with meromycolate branches ranging from C18 to C28, similar to the structures of the unbound mycolic acids found in the cell envelope. Up to 60 isobaric isomers varying in chain length of the α-branch and of the meromycolate backbone were observed for some of the TDM species in the mixture. This mass spectrometric approach provides a direct method that affords identification of various TMM and TDM isomers in a mixture of which the complexity of this lipid class has not been previously reported using other analytical methods. PMID:21972013

  9. Structural definition of trehalose 6-monomycolates and trehalose 6,6'-dimycolates from the pathogen Rhodococcus equi by multiple-stage linear ion-trap mass spectrometry with electrospray ionization

    PubMed Central

    Hsu, Fong-Fu; Wohlmann, Jens; Turk, John; Haas, Albert

    2014-01-01

    The cell wall of the pathogenic bacterium Rhodococcus equi (R. equi) contains abundant trehalose monomycolate (TMM) and trehalose dimycolate (TDM), the glycolipids bearing mycolic acids. Here, we describe multiple-stage (MSn) linear ion-trap (LIT) mass spectrometric approaches toward structural characterization of TMM and TDM desorbed as [M + Alk]+ (Alk = Na, Li) and as [M + X]- (X = CH3CO2, HCO2) ions by electrospray ionization (ESI). Upon MSn (n=2,3,4) on the [M + Alk]+ or the [M + X]− adduct ions of TMM and TDM, abundant structurally informative fragmentations are readily available, permitting fast assignment of the length of the meromycolate chain and of the α-branch on the mycolyl residues. In this way, structures of TMM and TDM isolated from pathogenic R. equi strain 103 can be determined. Our results indicate that the major TMM and TDM molecules possess 6, and/or 6’-mycolyl groups that consist of mainly C14 and C16 α-branches with meromycolate branches ranging from C18 to C28, similar to the structures of the unbound mycolic acids found in the cell envelope. Up to 60 isobaric isomers varying in chain length of the α-branch and of the meromycolate backbone were observed for some of the TDM species in the mixture. This mass spectrometric approach provides a direct method that affords identification of various TMM and TDM isomers in a mixture of which the complexity of this lipid class has not been previously reported using other analytical methods. PMID:21972013

  10. Zinc-oxide charge trapping memory cell with ultra-thin chromium-oxide trapping layer

    SciTech Connect

    El-Atab, Nazek; Rizk, Ayman; Nayfeh, Ammar; Okyay, Ali K.

    2013-11-15

    A functional zinc-oxide based SONOS memory cell with ultra-thin chromium oxide trapping layer was fabricated. A 5 nm CrO{sub 2} layer is deposited between Atomic Layer Deposition (ALD) steps. A threshold voltage (V{sub t}) shift of 2.6V was achieved with a 10V programming voltage. Also for a 2V V{sub t} shift, the memory with CrO{sub 2} layer has a low programming voltage of 7.2V. Moreover, the deep trapping levels in CrO{sub 2} layer allows for additional scaling of the tunnel oxide due to an increase in the retention time. In addition, the structure was simulated using Physics Based TCAD. The results of the simulation fit very well with the experimental results providing an understanding of the charge trapping and tunneling physics.

  11. Zinc-oxide charge trapping memory cell with ultra-thin chromium-oxide trapping layer

    NASA Astrophysics Data System (ADS)

    El-Atab, Nazek; Rizk, Ayman; Okyay, Ali K.; Nayfeh, Ammar

    2013-11-01

    A functional zinc-oxide based SONOS memory cell with ultra-thin chromium oxide trapping layer was fabricated. A 5 nm CrO2 layer is deposited between Atomic Layer Deposition (ALD) steps. A threshold voltage (Vt) shift of 2.6V was achieved with a 10V programming voltage. Also for a 2V Vt shift, the memory with CrO2 layer has a low programming voltage of 7.2V. Moreover, the deep trapping levels in CrO2 layer allows for additional scaling of the tunnel oxide due to an increase in the retention time. In addition, the structure was simulated using Physics Based TCAD. The results of the simulation fit very well with the experimental results providing an understanding of the charge trapping and tunneling physics.

  12. Induction of trap formation in nematode-trapping fungi by bacteria-released ammonia.

    PubMed

    Su, H N; Xu, Y Y; Wang, X; Zhang, K Q; Li, G H

    2016-04-01

    A total of 11 bacterial strains were assayed for bacteria-induced trap formation in the nematode-trapping fungus Arthrobotrys oligospora YMF1·01883 with two-compartmented Petri dish. These strains were identified on the basis of their 16S rRNA gene sequences. Volatile organic compounds (VOCs) of eight isolates were extracted using solid-phase micro-extraction (SPME) and their structures were identified based on gas chromatography-mass spectrometry (GC-MS). At the same time, all isolates were used for quantitative measurement of ammonia by the indophenol blue method. The effects of pure commercial compounds on inducement of trap formation in A. oligospora were tested. Taken together, results demonstrated that the predominant bacterial volatile compound inducing trap formation was ammonia. Meanwhile, ammonia also played a role in other nematode-trapping fungi, including Arthrobotrys guizhouensis YMF1·00014, producing adhesive nets; Dactylellina phymatopaga YMF1·01474, producing adhesive knobs; Dactylellina cionopaga YMF1·01472, producing adhesive columns and Drechslerella brochopaga YMF1·01829, producing constricting rings. PMID:26928264

  13. Structure of the HIV-1 Full-Length Capsid in a Conformationally-Trapped Unassembled State Induced by Small-Molecule Binding

    PubMed Central

    Du, Shoucheng; Betts, Laurie; Yang, Ruifeng; Shi, Haibin; Concel, Jason; Ahn, Jinwoo; Aiken, Christopher; Zhang, Peijun; Yeh, Joanne I.

    2011-01-01

    The capsid protein (CA) plays crucial roles in HIV-infection and replication, essential to viral maturation. The absence of high-resolution structural data on unassembled CA hinders the development of antivirals effective in inhibiting assembly. Unlike enzymes that have targetable functional substrate binding sites, the CA does not have a known site that affects catalytic or other innate activity, which can be more readily targeted in drug development efforts. We report the crystal structure of the HIV-1 CA, revealing the domain organization in context of the wild-type full-length (FL) unassembled CA. The FL CA adopts an antiparallel dimer (APD) configuration, exhibiting a domain organization sterically incompatible with capsid assembly. A small compound, generated in-situ during crystallization, is bound tightly at a hinge-site (“H-site”), indicating that binding at this interdomain region stabilizes the ADP conformation. Electron microscopy studies on nascent crystals reveal both dimeric and hexameric lattices coexisting within a single condition, in agreement with the interconvertibility of oligomeric forms and supporting the feasibility of promoting assembly-incompetent dimeric states. Solution characterization in the presence of the H-site ligand shows predominantly unassembled dimeric CA, even under conditions that promote assembly. Our structure elucidation of the HIV-1 FL CA and characterization of a potential allosteric binding site provides 3D views of an assembly-defective conformation, a state targeted in and, thus, directly relevant to, inhibitor development. Based on our findings, we propose an unprecedented means of preventing CA assembly, by ‘conformationally-trapping’ CA in assembly-incompetent conformational states, induced by H-site binding. PMID:21146540

  14. Trapping and tracking in the presence of phase disturbances

    NASA Astrophysics Data System (ADS)

    Seitz, Peter C.; Stelzer, Ernst H. K.; Rohrbach, Alexander

    2005-08-01

    Functionalized surfaces can affect (bio-) chemical reactions and control spatially the affinity for various binding partners. By either distributing specific binding points, by using biological reconstituted systems on the surface or by investigating whole cells, a surface phase relief is introduced. In the proximity of a trapped particle, these surface scatterers will both disturb the optical trap and the position tracking signal by changing the wave front of the trapping laser. We investigate the influence of an additional scatterer on trapping force, detection sensitivity and local viscous drag by scanning an optically trapped bead (probe) across a structured surface. Using a photonic force microscope, the probe's fluctuation traces are recorded interferometrically in three dimensions with nm precision and at scan rates of several hundred kilohertz with a quadrant photodiode. The phase disturbance located underneath the optical trap alters the interferometric probe position signals and can lead to incorrect interaction measurements. We propose and test a procedure to correct for the phase disturbance of the surface structure. In a roll over experiment, where one nano-sphere rolls over another, we prove the applicability of our phase correction approach. In addition we investigate the influence of small gold dots on the coverslip on trapping parameters which are relevant for specific interaction measurements in biotechnology.

  15. Nontoxic Antifreeze for Insect Traps

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Propylene glycol in water is a safe and effective alternative to ethylene glycol as a capture liquid in insect traps (pitfalls, flight intercepts, pan traps). Propylene glycol formulations are readily available because it is the primary (95%) ingredient in certain automotive antifreeze formulations...

  16. Mass trapping for Anastrepha suspensa

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mass trapping has been found to be highly effective for control of pest fruit flies when populations are low and a highly effective lure is available for the target species. Successful population control through mass trapping is an indicator that attract-and-kill bait stations may be equally succes...

  17. Quantum computing with trapped ions

    SciTech Connect

    Hughes, R.J.

    1998-01-01

    The significance of quantum computation for cryptography is discussed. Following a brief survey of the requirements for quantum computational hardware, an overview of the ion trap quantum computation project at Los Alamos is presented. The physical limitations to quantum computation with trapped ions are analyzed and an assessment of the computational potential of the technology is made.

  18. [Trapping techniques for Solenopsis invicta].

    PubMed

    Liang, Xiao-song; Zhang, Qiang; Zhuang, Yiong-lin; Li, Gui-wen; Ji, Lin-peng; Wang, Jian-guo; Dai, Hua-guo

    2007-06-01

    A field study was made to investigate the trapping effects of different attractants, traps, and wind directions on Solenopsis invicta. The results showed that among the test attractants, TB1 (50 g fishmeal, 40 g peptone, 10 ml 10% sucrose water solution and 20 ml soybean oil) had the best effect, followed by TB2 (ham), TB6 (100 g cornmeal and 20 ml soybean oil) and TB4 (10 ml 10% sucrose water solution, 100 g sugarcane powder and 20 ml soybean oil), with a mean capture efficiency being 77.6, 58.7, 29 and 7.7 individuals per trap, respectively. No S. invicta was trapped with TB3 (10 ml 10% sucrose water solution, 100 g cornmeal and 20 ml soybean oil) and TB5 (honey). Tube trap was superior to dish trap, with a trapping efficiency of 75.2 and 35 individuals per trap, respectively. The attractants had better effects in leeward than in windward. PMID:17763750

  19. Magnetostatic traps for charged and neutral particles

    NASA Astrophysics Data System (ADS)

    Gomer, V.; Harms, O.; Haubrich, D.; Schadwinkel, H.; Strauch, F.; Ueberholz, B.; Aus der Wiesche, S.; Meschede, D.

    1997-08-01

    We have constructed magnetostatic traps from permanent magnets for trapping charged and neutral atoms. Two storage experiments are presented: a compact Penning trap for light ions and magnetic trapping of single neutral atoms. The dynamics of cold neutral atoms and their loss mechanisms in a quadrupole magnetostatic trap are discussed.

  20. Optical traps to study properties of molecular motors.

    PubMed

    Spudich, James A; Rice, Sarah E; Rock, Ronald S; Purcell, Thomas J; Warrick, Hans M

    2011-11-01

    In vitro motility assays enabled the analysis of coupling between ATP hydrolysis and movement of myosin along actin filaments or kinesin along microtubules. Single-molecule assays using laser trapping have been used to obtain more detailed information about kinesins, myosins, and processive DNA enzymes. The combination of in vitro motility assays with laser-trap measurements has revealed detailed dynamic structural changes associated with the ATPase cycle. This article describes the use of optical traps to study processive and nonprocessive molecular motor proteins, focusing on the design of the instrument and the assays to characterize motility. PMID:22046048

  1. Universal, strong and long-ranged trapping by optical conveyors

    NASA Astrophysics Data System (ADS)

    Ruffner, David; Grier, David G.

    2015-03-01

    Optical conveyors are active tractor beams that selectively transport illuminated objects either upstream or downstream along their axes. Formed by the coherent superposition of coaxial Bessel beams, an optical conveyor features an axial array of equally spaced intensity maxima that act as optical traps for small objects. We demonstrate through measurements on colloidal spheres and numerical calculations based on the generalized Lorenz-Mie theory that optical conveyors' interferometric structure endows them with trapping characteristics far superior to those of conventional optical tweezers. Optical conveyors form substantially stiffer traps and can transport a wider variety of materials over a much longer axial range.

  2. Universal, strong and long-ranged trapping by optical conveyors.

    PubMed

    Ruffner, David B; Grier, David G

    2014-11-01

    Optical conveyors are active tractor beams that selectively transport illuminated objects either upstream or downstream along their axes. Formed by the coherent superposition of coaxial Bessel beams, an optical conveyor features an axial array of equally spaced intensity maxima that act as optical traps for small objects. We demonstrate through measurements on colloidal spheres and numerical calculations based on the generalized Lorenz-Mie theory that optical conveyors' interferometric structure endows them with trapping characteristics far superior to those of conventional optical tweezers. Optical conveyors form substantially stiffer traps and can transport a wider variety of materials over a much longer axial range. PMID:25401830

  3. Optical Traps to Study Properties of Molecular Motors

    PubMed Central

    Spudich, James A.; Rice, Sarah E.; Rock, Ronald S.; Purcell, Thomas J.; Warrick, Hans M.

    2016-01-01

    In vitro motility assays enabled the analysis of coupling between ATP hydrolysis and movement of myosin along actin filaments or kinesin along microtubules. Single-molecule assays using laser trapping have been used to obtain more detailed information about kinesins, myosins, and processive DNA enzymes. The combination of in vitro motility assays with laser-trap measurements has revealed detailed dynamic structural changes associated with the ATPase cycle. This article describes the use of optical traps to study processive and nonprocessive molecular motor proteins, focusing on the design of the instrument and the assays to characterize motility. PMID:22046048

  4. Trapping phosphate anions inside the [Ag{sub 4}I]{sup 3+} framework: Structure, bonding, and properties of Ag{sub 4}I(PO{sub 4})

    SciTech Connect

    Oleneva, Olga S.; Kirsanova, Maria A.; Shestimerova, Tatiana A.; Abramchuk, Nikolay S.; Davliatshin, Dmitry I.; Bykov, Mikhail A.; Dikarev, Evgeny V.; Shevelkov, Andrei V.

    2008-01-15

    Orange-red Ag{sub 4}I(PO{sub 4}) crystallizes in the monoclinic system, space group P2{sub 1}/m (No. 11), with the unit cell dimensions a=9.0874(6) A, b=6.8809(5) A, c=11.1260(7) A, {beta}=109.450(1){sup o}, and Z=4. The crystal structure is fully ordered; it comprises the silver-iodine three-dimensional positively charged framework hosting the tetrahedral PO{sub 4}{sup 3-} guest anions. The framework features high coordination numbers for iodine and manifold Ag-Ag bonds ranging from 3.01 to 3.46 A. The Ag-Ag interaction is bonding, it involves silver 4d and 5s orbitals lying, together with the orbitals of iodine, just below the Fermi level. Though the orbitals of silver and iodine define the conducting properties of the title compound, the interaction between the framework and the guest anions is also important and is responsive to the number of the silver atoms surrounding the PO{sub 4}{sup 3-} tetrahedra. Ag{sub 4}I(PO{sub 4}) melts incongruently at 591 K and produces a mixture of the silver phosphate and an amorphous phase upon cooling. Pure Ag{sub 4}I(PO{sub 4}) is a poor conductor with a room temperature conductivity of 3x10{sup -6} S m{sup -1}. The discrepancies between the properties observed here and those reported previously in the literature are discussed. - Graphical abstract: Regular [PO{sub 4}] tetrahedra fill large voids in the Ag-I framework to form a host-guest compound, Ag{sub 4}I(PO{sub 4}). It has a perfectly ordered crystal structure, atypical for this kind of compounds, rendering the study of the manifold Ag-Ag bonds and the host-guest interaction. However, this ordering leads to low ionic conductivity.

  5. Pulsed filling of a dark magnetooptical trap for rubidium atoms

    SciTech Connect

    Chapovskii, Pavel L

    2006-03-31

    The parameters of a dark magnetooptical trap for rubidium atoms are measured. The rubidium atoms captured and cooled in the trap occupy a hyperfine level of the ground electronic state, which does not interact with cooling laser radiation. The pulsed filling of the trap is produced due to desorption of rubidium caused by irradiation by a short (1 ms) light pulse. The trap captures and cools 2.5x10{sup 8} rubidium atoms approximately for 0.2 s. The absorption spectra of a weak probe field by cold atoms are obtained, which demonstrate a good spectral resolution of the hyperfine structure in the excited state. This structure is completely hidden by the Doppler broadening in rubidium vapours at room temperature. (laser cooling)

  6. The trapped human experiment.

    PubMed

    Huo, R; Agapiou, A; Bocos-Bintintan, V; Brown, L J; Burns, C; Creaser, C S; Devenport, N A; Gao-Lau, B; Guallar-Hoyas, C; Hildebrand, L; Malkar, A; Martin, H J; Moll, V H; Patel, P; Ratiu, A; Reynolds, J C; Sielemann, S; Slodzynski, R; Statheropoulos, M; Turner, M A; Vautz, W; Wright, V E; Thomas, C L P

    2011-12-01

    This experiment observed the evolution of metabolite plumes from a human trapped in a simulation of a collapsed building. Ten participants took it in turns over five days to lie in a simulation of a collapsed building and eight of them completed the 6 h protocol while their breath, sweat and skin metabolites were passed through a simulation of a collapsed glass-clad reinforced-concrete building. Safety, welfare and environmental parameters were monitored continuously, and active adsorbent sampling for thermal desorption GC-MS, on-line and embedded CO, CO(2) and O(2) monitoring, aspirating ion mobility spectrometry with integrated semiconductor gas sensors, direct injection GC-ion mobility spectrometry, active sampling thermal desorption GC-differential mobility spectrometry and a prototype remote early detection system for survivor location were used to monitor the evolution of the metabolite plumes that were generated. Oxygen levels within the void simulator were allowed to fall no lower than 19.1% (v). Concurrent levels of carbon dioxide built up to an average level of 1.6% (v) in the breathing zone of the participants. Temperature, humidity, carbon dioxide levels and the physiological measurements were consistent with a reproducible methodology that enabled the metabolite plumes to be sampled and characterized from the different parts of the experiment. Welfare and safety data were satisfactory with pulse rates, blood pressures and oxygenation, all within levels consistent with healthy adults. Up to 12 in-test welfare assessments per participant and a six-week follow-up Stanford Acute Stress Response Questionnaire indicated that the researchers and participants did not experience any adverse effects from their involvement in the study. Preliminary observations confirmed that CO(2), NH(3) and acetone were effective markers for trapped humans, although interactions with water absorbed in building debris needed further study. An unexpected observation from the NH(3

  7. Ultrasonic imaging using trapped energy mode Fresnel lens transducers

    NASA Technical Reports Server (NTRS)

    Das, P.; Talley, S.; Kraft, R.; Tiersten, H. F.; Mcdonald, J. F.

    1980-01-01

    Trapped-energy focusing transducers operating in the 2-5 MHz range have been fabricated by plating concentric rings of electrodes on a piezoelectric plate. The concentric ring structure acts as a Fresnel lens and can be used to obtain excellent lateral focusing of ultrasonic waves. The trapping is sufficiently strong to permit optimization of electrode spacings to suppress spurious virtual foci and ring sidelobes.

  8. Toward scalable ion traps for quantum information processing

    NASA Astrophysics Data System (ADS)

    Amini, J. M.; Uys, H.; Wesenberg, J. H.; Seidelin, S.; Britton, J.; Bollinger, J. J.; Leibfried, D.; Ospelkaus, C.; VanDevender, A. P.; Wineland, D. J.

    2010-03-01

    In this paper, we report the design, fabrication and preliminary testing of a 150 zone ion trap array built in a 'surface-electrode' geometry microfabricated on a single substrate. We demonstrate the transport of atomic ions between the legs of a 'Y'-type junction and measure the in-situ heating rates for the ions. The trap design demonstrates the use of a basic component design library that can be quickly assembled to form structures optimized for a particular experiment.

  9. Investigation into mercury bound to biothiols: structural identification using ESI–ion-trap MS and introduction of a method for their HPLC separation with simultaneous detection by ICP-MS and ESI-MS

    PubMed Central

    Milne, Bruce F.; Mestrot, Adrien; Meharg, Andrew A.; Feldmann, Jörg

    2008-01-01

    Mercury in plants or animal tissue is supposed to occur in the form of complexes formed with biologically relevant thiols (biothiols), rather than as free cation. We describe a technique for the separation and molecular identification of mercury and methylmercury complexes derived from their reactions with cysteine (Cys) and glutathione (GS): Hg(Cys)2, Hg(GS)2, MeHgCys, MeHgGS. Complexes were characterised by electrospray mass spectrometry (MS) equipped with an ion trap and the fragmentation pattern of MeHgCys was explained by using MP2 and B3LYP calculations, showing the importance of mercury–amine interactions in the gas phase. Chromatographic baseline separation was performed within 10 min with formic acid as the mobile phase on a reversed-phase column. Detection was done by online simultaneous coupling of ES-MS and inductively coupled plasma MS. When the mercury complexes were spiked in real samples (plant extracts), no perturbation of the separation and detection conditions was observed, suggesting that this method is capable of detecting mercury biothiol complexes in plants. Figure Separation and structural identification of Hg and MeHg biothiols PMID:18297471

  10. Combined acoustic and optical trapping

    PubMed Central

    Thalhammer, G.; Steiger, R.; Meinschad, M.; Hill, M.; Bernet, S.; Ritsch-Marte, M.

    2011-01-01

    Combining several methods for contact free micro-manipulation of small particles such as cells or micro-organisms provides the advantages of each method in a single setup. Optical tweezers, which employ focused laser beams, offer very precise and selective handling of single particles. On the other hand, acoustic trapping with wavelengths of about 1 mm allows the simultaneous trapping of many, comparatively large particles. With conventional approaches it is difficult to fully employ the strengths of each method due to the different experimental requirements. Here we present the combined optical and acoustic trapping of motile micro-organisms in a microfluidic environment, utilizing optical macro-tweezers, which offer a large field of view and working distance of several millimeters and therefore match the typical range of acoustic trapping. We characterize the acoustic trapping forces with the help of optically trapped particles and present several applications of the combined optical and acoustic trapping, such as manipulation of large (75 μm) particles and active particle sorting. PMID:22025990

  11. Trap-mulching Argentine ants.

    PubMed

    Silverman, Jules; Sorenson, Clyde E; Waldvogel, Michael G

    2006-10-01

    Argentine ant, Linepithema humile (Mayr), management is constrained, in large part, by polydomy where nestmates are distributed extensively across urban landscapes, particularly within mulch. Management with trap-mulching is a novel approach derived from trap-cropping where ants are repelled from a broad domain of nest sites to smaller defined areas, which are subsequently treated with insecticide. This concept was field-tested with mulch surrounding ornamental trees replaced with a narrow band of pine (Pinus spp.) needle mulch (trap) within a much larger patch of repellent aromatic cedar (Juniperus spp.) mulch. After ants reestablished around the trees, the pine needle mulch band was treated with 0.06% fipronil (Termidor). Poor results were obtained when the trap extended from the tree trunk to the edge of the mulched area. When the trap was applied as a circular band around the tree trunk reductions in the number of foraging ants were recorded through 14 d compared with an untreated mulch control, but not for longer periods. Reductions in the number of ant nests within mulch were no different between the trap mulch and any of the other treatments. We conclude that trap-mulching offers limited benefits, and that successful management of Argentine ants will require implementation of complementary or perhaps alternative strategies. PMID:17066809

  12. Acoustic rainbow trapping by coiling up space.

    PubMed

    Ni, Xu; Wu, Ying; Chen, Ze-Guo; Zheng, Li-Yang; Xu, Ye-Long; Nayar, Priyanka; Liu, Xiao-Ping; Lu, Ming-Hui; Chen, Yan-Feng

    2014-01-01

    We numerically realize the acoustic rainbow trapping effect by tapping an air waveguide with space-coiling metamaterials. Due to the high refractive-index of the space-coiling metamaterials, our device is more compact compared to the reported trapped-rainbow devices. A numerical model utilizing effective parameters is also calculated, whose results are consistent well with the direct numerical simulation of space-coiling structure. Moreover, such device with the capability of dropping different frequency components of a broadband incident temporal acoustic signal into different channels can function as an acoustic wavelength division de-multiplexer. These results may have potential applications in acoustic device design such as an acoustic filter and an artificial cochlea. PMID:25392033

  13. Nanoscale ablation through optically trapped microspheres

    NASA Astrophysics Data System (ADS)

    Fardel, Romain; McLeod, Euan; Tsai, Yu-Cheng; Arnold, Craig B.

    2010-10-01

    The ability to directly create patterns with size scales below 100 nm is important for many applications where the production or repair of high resolution and density features is needed. Laser-based direct-write methods have the benefit of being able to quickly and easily modify and create structures on existing devices, but ablation can negatively impact the overall technique. In this paper we show that self-positioning of near-field objectives through the optical trap assisted nanopatterning (OTAN) method allows for ablation without harming the objective elements. Small microbeads are positioned in close proximity to a substrate where ablation is initiated. Upon ablation, these beads are temporarily displaced from the trap but rapidly return to the initial position. We analyze the range of fluence values for which this process occurs and find that there exists a critical threshold beyond which the beads are permanently ejected.

  14. Acoustic rainbow trapping by coiling up space

    PubMed Central

    Ni, Xu; Wu, Ying; Chen, Ze-Guo; Zheng, Li-Yang; Xu, Ye-Long; Nayar, Priyanka; Liu, Xiao-Ping; Lu, Ming-Hui; Chen, Yan-Feng

    2014-01-01

    We numerically realize the acoustic rainbow trapping effect by tapping an air waveguide with space-coiling metamaterials. Due to the high refractive-index of the space-coiling metamaterials, our device is more compact compared to the reported trapped-rainbow devices. A numerical model utilizing effective parameters is also calculated, whose results are consistent well with the direct numerical simulation of space-coiling structure. Moreover, such device with the capability of dropping different frequency components of a broadband incident temporal acoustic signal into different channels can function as an acoustic wavelength division de-multiplexer. These results may have potential applications in acoustic device design such as an acoustic filter and an artificial cochlea. PMID:25392033

  15. Characterizing single atom optical dipole traps

    NASA Astrophysics Data System (ADS)

    Shih, Chung-Yu; Gibbons, Michael; Chapman, Michael

    2012-06-01

    Trapping and manipulating individual neutral atoms in far off-resonant traps (FORTs) is a promising approach for quantum information processing. It is important to characterize the trapping environment of the atom and the atomic level shifts due to the trapping fields. Using non-destructive measurement techniques,ootnotetextM. J. Gibbons et al., Phys. Rev. Lett 106, 133002 (2011). we have measured the level dependent AC Stark shifts, trap frequencies, and temperature of single rubidium atoms confined in optical dipole trap.

  16. Weak Interaction Measurements with Optically Trapped Radioactive Atoms

    SciTech Connect

    Vieira, D.J.; Crane, S.G.; Guckert, R.; Zhao, X.; Brice, S.J.; Goldschmidt, A.; Hime, A.; Tupa, D.

    1999-07-16

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The goal of this project is to apply the latest in magneto-optical and pure magnetic trapping technology to concentrate, cool, confine, and polarize radioactive atoms for precise electroweak interaction measurements. In particular, the authors have concentrated their efforts on the trapping of {sup 82}Rb for a parity-violating, beta-asymmetry measurement. Progress has been made in successfully trapping of up to 6 million {sup 82}Rb(t{sub 1/2}=75s) atoms in a magneto-optical trap coupled to a mass separator. This represents a two order of magnitude improvement in the number trapped radioactive atoms over all previous work. They have also measured the atomic hyperfine structure of {sup 82}Rb and demonstrated the MOT-to-MOT transfer and accumulation of atoms in a second trap. Finally, they have constructed and tested a time-orbiting-potential magnetic trap that will serve as a rotating beacon of spin-polarized nuclei and a beta-telescope detection system. Prototype experiments are now underway with the initial goal of making a 1% measurements of the beta-asymmetry parameter A which would match the world's best measurements.

  17. The Sheet Trapped in a Plumber's Nightmare

    NASA Astrophysics Data System (ADS)

    O'Bryan, Christopher; Bhattacharjee, Tapomoy; Sawyer, W. Gregory; Angelini, Thomas

    Block co-polymer systems offer exquisite control in the molecular-level design of self-assembled structures. The application of block copolymer phases has been generally limited to their use as bulk stabilizing agents in mass produced commodity chemicals and plastics. Recently, we have found the complex phase structures of self-assembled styrene ethylene/propylene diblock and styrene ethylene/butylene triblock co-polymers useful in 3D printing of other soft materials; the co-polymer structure yields around a writing nozzle as it moves through space while leaving material (polymers or colloids) trapped in the form of programmed structures. However, the relationship between the structural phase of the co-polymer self-assembly and its ability to support printed soft matter materials is not understood. In this study, we explore how different block co-polymer assemblies interact with and support soft matter materials once localized yielding has occurred.

  18. CO2 Capillary-Trapping Processes in Deep Saline Aquifers

    NASA Astrophysics Data System (ADS)

    Gershenzon, Naum I.; Soltanian, Mohamadreza; Ritzi, Robert W., Jr.; Dominic, David F.

    2014-05-01

    The idea of reducing the Earth's greenhouse effect by sequestration of CO2 into the Earth's crust has been discussed and evaluated for more than two decades. Deep saline aquifers are the primary candidate formations for realization of this idea. Evaluation of reservoir capacity and the risk of CO2 leakage require a detailed modeling of the migration and distribution of CO2 in the subsurface structure. There is a finite risk that structural (or hydrodynamic) trapping by caprock may be compromised (e.g. by improperly abandoned wells, stratigraphic discontinuities, faults, etc.). Therefore, other trapping mechanisms (capillary trapping, dissolution, and mineralization) must be considered. Capillary trapping may be very important in providing a "secondary-seal", and is the focus of our investigation. The physical mechanism of CO2 trapping in porous media by capillary trapping incorporates three related processes, i.e. residual trapping, trapping due to hysteresis of the relative permeability, and trapping due to hysteresis of the capillary pressure. Additionally CO2 may be trapped in heterogeneous media due to difference in capillary pressure entry points for different materials. The amount of CO2 trapped by these processes is a complicated nonlinear function of the spatial distribution of permeability, permeability anisotropy, capillary pressure, relative permeability of brine and CO2, permeability hysteresis and residual gas saturation (as well as the rate, total amount and placement of injected CO2). Geological heterogeneities essentially affect the dynamics of a CO2 plume in subsurface environments. Recent studies have led to new conceptual and quantitative models for sedimentary architecture in fluvial deposits over a range of scales that are relevant to the performance of some deep saline reservoirs [1, 2]. We investigated how the dynamics of a CO2 plume, during and after injection, is influenced by the hierarchical and multi-scale stratal architecture in such

  19. Vortex dynamics in anisotropic traps

    SciTech Connect

    McEndoo, S.; Busch, Th.

    2010-07-15

    We investigate the dynamics of linear vortex lattices in anisotropic traps in two dimensions and show that the interplay between the rotation and the anisotropy leads to a rich but highly regular dynamics.

  20. The earth's trapped radiation belts

    NASA Technical Reports Server (NTRS)

    Noll, R. B.; Mcelroy, M. B.

    1975-01-01

    The near-earth charged particle environment is discussed in terms of spacecraft design criteria. Models are presented of the trapped radiation belts and based on in-situ data obtained from spacecraft.

  1. Hole-trapping in molecularly doped polymers

    NASA Astrophysics Data System (ADS)

    Borsenberger, Paul M.; Gruenbaum, William T.; Lin, Liang-Bih; Visser, Susan A.

    1998-04-01

    Hole mobilities have been measured in tri-p-tolylamine (TTA) doped poly(styrene) containing different concentrations of di- p-tolyl-p-anisylamine (DTA) or tri-p-anisylamine (TAA). DTA and TAA are traps with depths of 0.08 and 0.22 eV, respectively. For low concentrations of DTA or TAA, the transport processes are trap controlled and the mobilities decrease with increasing trap concentration. For high TAA concentrations, however, the transport processes are dominated by trap-to-trap hopping and the mobilities increase with increasing trap concentrations. The threshold concentration for the transition from trap controlled to trap-to-trap transport is approximately 10-1. A transition to trap- to-trap hopping is not observed for TTA containing DTA. The results are discussed within the framework of the Hoesterey- Letson formalism and the recent simulations of Wolf et al. and Borsenberger et al.

  2. Trapping and evolution dynamics of strongly magnetized cold gases

    NASA Astrophysics Data System (ADS)

    Choi, Jae-Hoon

    Cold Rydberg atoms and ultracold plasmas have been studied in the strong-magnetization regime. In this new territory, novel atomic and plasma states---such as guiding-center drift Rydberg attains and strongly magnetized, quasi-neutral, ultracold plasmas---have been created and investigated. The evolution dynamics studies of these exotic diamagnetic forms of matter, made possible by implementing a superconducting magnetic atom trap, revealed rich dynamical features in the systems: The Landau-quantized energy structure has led to entirely different evolutions of the highly excited atoms in laser-excited or drift Rydberg states than in magnetic-field-free cases; and the presence of the strong magnetic field has drastically altered the collisional behavior and expansion dynamics of the plasmas. Furthermore, atom cooling and trapping methodology has been extended in multiple directions. Firstly, laser cooling and magnetic trapping of ground-state atoms has been demonstrated in magnetic; fields exceeding 3 Tesla, representing a 20-fold increase in the field-strength of cold-atom traps. Secondly, the trapping of Rydberg atoms with a lifetime of 80 ms has been achieved. This trapping technique exploits the quasi-free nature of Rydberg electrons, which can be adopted in other forms of Rydberg-atom trapping. Lastly; the trapping of two-component, ultracold plasmas has been demonstrated in a nested Penning-trap configuration. The confinement of quasi-neutral ultracold plasmas allowed us to observe novel effects such as the correlation between the ionic oscillation and the electron energy distribution.

  3. Experimental investigation of planar ion traps

    SciTech Connect

    Pearson, C. E.; Leibrandt, D. R.; Bakr, W. S.; Mallard, W. J.; Brown, K. R.; Chuang, I. L.

    2006-03-15

    Chiaverini et al. [Quantum Inf. Comput. 5, 419 (2005)] recently suggested a linear Paul trap geometry for ion-trap quantum computation that places all of the electrodes in a plane. Such planar ion traps are compatible with modern semiconductor fabrication techniques and can be scaled to make compact, many-zone traps. In this paper we present an experimental realization of planar ion traps using electrodes on a printed circuit board to trap linear chains of tens of charged particles of 0.44 {mu}m diameter in a vacuum of 15 Pa (10{sup -1} torr). With these traps we address concerns about the low trap depth of planar ion traps and develop control electrode layouts for moving ions between trap zones without facing some of the technical difficulties involved in an atomic ion-trap experiment. Specifically, we use a trap with 36 zones (77 electrodes) arranged in a cross to demonstrate loading from a traditional four-rod linear Paul trap, linear ion movement, splitting and joining of ion chains, and movement of ions through intersections. We further propose an additional dc-biased electrode above the trap which increases the trap depth dramatically, and a planar ion-trap geometry that generates a two-dimensional lattice of point Paul traps.

  4. Collisionless microtearing modes in hot tokamaks: Effect of trapped electrons

    SciTech Connect

    Swamy, Aditya K.; Ganesh, R.; Brunner, S.; Vaclavik, J.; Villard, L.

    2015-07-15

    Collisionless microtearing modes have recently been found linearly unstable in sharp temperature gradient regions of large aspect ratio tokamaks. The magnetic drift resonance of passing electrons has been found to be sufficient to destabilise these modes above a threshold plasma β. A global gyrokinetic study, including both passing electrons as well as trapped electrons, shows that the non-adiabatic contribution of the trapped electrons provides a resonant destabilization, especially at large toroidal mode numbers, for a given aspect ratio. The global 2D mode structures show important changes to the destabilising electrostatic potential. The β threshold for the onset of the instability is found to be generally downshifted by the inclusion of trapped electrons. A scan in the aspect ratio of the tokamak configuration, from medium to large but finite values, clearly indicates a significant destabilizing contribution from trapped electrons at small aspect ratio, with a diminishing role at larger aspect ratios.

  5. Magneto-optical trapping and ultracold collisions of potassium atoms

    NASA Astrophysics Data System (ADS)

    Williamson, R. S., III; Walker, T.

    1995-08-01

    We present measurements of loading and loss rates for a vapor-cell optical trap of the two naturally occurring potassium isotopes 39 K and 41K. The unresolved excited-state hyperfine structure makes trapping of K fundamentally different from trapping of the other alkalis and leads to an enhanced loading rate. We measure the loading rate as a function of laser intensity, beam size, and detuning and find that the results are in reasonable agreement with a simple rate-equation model for the loading process. The dependence of the loss rate on trapped-atom density determines the contribution to the loss rates from excited-state collisions. We find a substantial difference between the collisional loss rates for the two isotopes.

  6. Electron source for a mini ion trap mass spectrometer

    DOEpatents

    Dietrich, Daniel D.; Keville, Robert F.

    1995-01-01

    An ion trap which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10.sup.9 and commercial mass spectrometers requiring 10.sup.4 ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products.

  7. Electron source for a mini ion trap mass spectrometer

    DOEpatents

    Dietrich, D.D.; Keville, R.F.

    1995-12-19

    An ion trap is described which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10{sup 9} and commercial mass spectrometers requiring 10{sup 4} ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products. 10 figs.

  8. Towards Non-Equilibrium Dynamics with Trapped Ions

    NASA Astrophysics Data System (ADS)

    Silbert, Ariel; Jubin, Sierra; Doret, Charlie

    2016-05-01

    Atomic systems are superbly suited to the study of non-equilibrium dynamics. These systems' exquisite isolation from environmental perturbations leads to long relaxation times that enable exploration of far-from-equilibrium phenomena. One example of particular relevance to experiments in trapped ion quantum information processing, metrology, and precision spectroscopy is the approach to thermal equilibrium of sympathetically cooled linear ion chains. Suitable manipulation of experimental parameters permits exploration of the quantum-to-classical crossover between ballistic transport and diffusive, Fourier's Law conduction, a topic of interest not only to the trapped ion community but also for the development of microelectronic devices and other nanoscale structures. We present progress towards trapping chains of multiple co-trapped calcium isotopes geared towards measuring thermal equilibration and discuss plans for future experiments in non-equilibrium statistical mechanics. This work is supported by Cottrell College Science Award from the Research Corporation for Science Advancement and by Williams College.

  9. Entropic cages for trapping DNA near a nanopore

    NASA Astrophysics Data System (ADS)

    Liu, Xu; Skanata, Mirna Mihovilovic; Stein, Derek

    2015-02-01

    Nanopores can probe the structure of biopolymers in solution; however, diffusion makes it difficult to study the same molecule for extended periods. Here we report devices that entropically trap single DNA molecules in a 6.2-femtolitre cage near a solid-state nanopore. We electrophoretically inject DNA molecules into the cage through the nanopore, pause for preset times and then drive the DNA back out through the nanopore. The saturating recapture time and high recapture probability after long pauses, their agreement with a convection-diffusion model and the observation of trapped DNA under fluorescence microscopy all confirm that the cage stably traps DNA. Meanwhile, the cages have 200 nm openings that make them permeable to small molecules, like the restriction endonuclease we use to sequence-specifically cut trapped DNA into fragments whose number and sizes are analysed upon exiting through the nanopore. Entropic cages thus serve as reactors for chemically modifying single DNA molecules.

  10. Ion beam analysis of defect trapping

    NASA Astrophysics Data System (ADS)

    Swanson, M. L.; Howe, L. M.

    1983-12-01

    Channeling measurements using medium energy ions (e.g. 1 MeV He +) have been used to determine the positions of solute atoms which are displaced from lattice sites by the trapping of vacancies and self-interstitial atoms. In this way, some simple defect trapping configurations have been identified in fcc metals. One of these is the mixed dumbbell (created when a self-interstitial is trapped by a small solute atom), consisting of a host atom and solute atom stradding a normal lattice site. Another is the tetravacancy-solute atom complex, consisting of four nearest neighbour vacancies surrounding a solute atom displaced into the tetrahedral interstitial site. In addition, from detailed analyses of displacements into different crystallographic channels as a function of irradiation fluence and annealing temperature, the evolution of a variety of defect complexes containing self-interstitials or vacancies has been studied in Al, Cu, Ni, Fe, and Mg crystals. Information from channeling analyses will be compared with data obtained from measurements of electrical resistivity, Mössbauer effect, perturbed angular correlation, extended X-ray absorption fine structure, muon precession, positron annihilation and internal friction. The advantages of the different methods will be discussed.

  11. Optical trapping for tissue scaffold fabrication

    NASA Astrophysics Data System (ADS)

    Linnenberger, Anna; Fiedler, Callie; Roberts, Justine J.; Skaalure, Stacey C.; Bryant, Stephanie J.; Cole, Michael C.; McLeod, Robert R.

    2013-09-01

    We investigate holographic optical trapping combined with step-and-repeat maskless projection stereolithography for fine control of 3D position of living cells within a 3D microstructured hydrogel. C2C12 myoblast cells were chosen as a demonstration platform because their development into multinucleated myotubes requires linear arrangements of myoblasts. C2C12 cells are positioned in the monomer solution with multiple optical traps at 1064 nm and then are encapsulated by photopolymerization of monomer via projection of a 512x512 spatial light modulator (SLM) illuminated at 405 nm. High 405 nm sensitivity and complete insensitivity to 1064 nm is enabled by a lithium acylphosphinate (LAP) salt photoinitiator. Use of a polyethylene glycol dimethacrylate (PEGDMA) based monomer is compared to that of polyethylene glycol (PEG) hydrogels formed by thiol-ene photo-click chemistry for patterning structures with cellular resolution, and for maintaining cell viability. Cells patterned in thiol-ene with RGD are shown to retain viability up to 4 days after the trapping and encapsulation procedure. Further, cells patterned in thiol-ene with RGD and a degradable ester link, are shown to fuse, indicating the initial stages of development of multi-nucleated cells.

  12. Fully ElectroStatic Ion Traps for β-decay Studies

    NASA Astrophysics Data System (ADS)

    Ron, Guy

    2010-11-01

    Using principles analogous to those of conventional optics it is possible to construct fully electrostatic ion traps which act as a resonant cavity for ion beams. Such traps exhibit an unexpected phenomenon of self-bunching which allows for long lifetimes of trapped ion bunches. Such a trap was originally conceived and developed at the Weimann Institute of Science. Based on this design we are constructing such a trap for use with the LBL IRIS beamline. I will present the principles and design of such a trap. I will further discuss the experimental possibilities afforded, with emphasis on mass spectroscopy and possible measurements of β decay correlations of trapped radioactive ions. Such measurements allow the study of possible standard model extensions affecting the structure of the weak interaction.

  13. Imaging electronic trap states in perovskite thin films with combined fluorescence and femtosecond transient absorption microscopy

    DOE PAGESBeta

    Xiao, Kai; Ma, Ying -Zhong; Simpson, Mary Jane; Doughty, Benjamin; Yang, Bin

    2016-04-22

    Charge carrier trapping degrades the performance of organometallic halide perovskite solar cells. To characterize the locations of electronic trap states in a heterogeneous photoactive layer, a spatially resolved approach is essential. Here, we report a comparative study on methylammonium lead tri-iodide perovskite thin films subject to different thermal annealing times using a combined photoluminescence (PL) and femtosecond transient absorption microscopy (TAM) approach to spatially map trap states. This approach coregisters the initially populated electronic excited states with the regions that recombine radiatively. Although the TAM images are relatively homogeneous for both samples, the corresponding PL images are highly structured. Themore » remarkable variation in the PL intensities as compared to transient absorption signal amplitude suggests spatially dependent PL quantum efficiency, indicative of trapping events. Furthermore, detailed analysis enables identification of two trapping regimes: a densely packed trapping region and a sparse trapping area that appear as unique spatial features in scaled PL maps.« less

  14. Imaging Electronic Trap States in Perovskite Thin Films with Combined Fluorescence and Femtosecond Transient Absorption Microscopy.

    PubMed

    Simpson, Mary Jane; Doughty, Benjamin; Yang, Bin; Xiao, Kai; Ma, Ying-Zhong

    2016-05-01

    Charge carrier trapping degrades the performance of organometallic halide perovskite solar cells. To characterize the locations of electronic trap states in a heterogeneous photoactive layer, a spatially resolved approach is essential. Here, we report a comparative study on methylammonium lead tri-iodide perovskite thin films subject to different thermal annealing times using a combined photoluminescence (PL) and femtosecond transient absorption microscopy (TAM) approach to spatially map trap states. This approach coregisters the initially populated electronic excited states with the regions that recombine radiatively. Although the TAM images are relatively homogeneous for both samples, the corresponding PL images are highly structured. The remarkable variation in the PL intensities as compared to transient absorption signal amplitude suggests spatially dependent PL quantum efficiency, indicative of trapping events. Detailed analysis enables identification of two trapping regimes: a densely packed trapping region and a sparse trapping area that appear as unique spatial features in scaled PL maps. PMID:27103096

  15. Ion Trap Array-Based Systems And Methods For Chemical Analysis

    DOEpatents

    Whitten, William B [Oak Ridge, TN; Ramsey, J Michael [Knoxville, TN

    2005-08-23

    An ion trap-based system for chemical analysis includes an ion trap array. The ion trap array includes a plurality of ion traps arranged in a 2-dimensional array for initially confining ions. Each of the ion traps comprise a central electrode having an aperture, a first and second insulator each having an aperture sandwiching the central electrode, and first and second end cap electrodes each having an aperture sandwiching the first and second insulator. A structure for simultaneously directing a plurality of different species of ions out from the ion traps is provided. A spectrometer including a detector receives and identifies the ions. The trap array can be used with spectrometers including time-of-flight mass spectrometers and ion mobility spectrometers.

  16. Guiding and trapping microparticles in an extended surface field

    NASA Astrophysics Data System (ADS)

    Garces-Chavez, Veneranda; Spalding, Gabriel C.; Dholakia, Kishan

    2004-10-01

    We made use of near-field photonic forces in order to manipulate and trap microparticles in an extended area above a solid surface. Structures in evanescent field were created either by imaging a Ronchi ruler (fringe structure) or by focusing five beams (spot structure) at the top of a prism. The surface field couples to microparticles in close proximity, where the near-field wave can be converted to a propagating wave, via photon tunnelling across the gap from prism to microparticles. Due to transverse optical gradients and radiation pressure, microparticles immersed in water were laterally trapped and longitudinally guided along the direction of the evanescent waves. By splitting the laser beam into two equal counterpropagating beams, another evanescent wave was created exactly with the same structure in the opposite direction to the first one. We use this geometry we demonstrate stably trap of thousand of microparticles over an area of about a millimetre squared. Red blood and yeast cells were also individually trapped in an array of potential wells. We believe this is the first demonstration of guiding and, separately, trapped in unison multiple microparticles on a surface.

  17. Progress at the Penning Trap Mass Spectrometer ``THe-Trap''

    NASA Astrophysics Data System (ADS)

    Hoecker, Martin; Eronen, Tommi; Ketter, Jochen; Streubel, Sebastian; Blaum, Klaus; van Dyck, Robert S.

    2012-03-01

    In 2008, the ``University of Washington Penning-Trap Mass Spectrometer'' (UW-PTMS), originally designed and built by the Van Dyck group, was moved to the Max-Planck-Insitute for Nuclear Physics in Heidelberg, Germany. It was set up in a dedicated laboratory that meets both the radiation-safety requirements, and the environment-stabilization demands for a high-precision measurement of the tritium/helium-3 mass ratio. Our goal is to measure this mass ratio with a relative uncertainty of 10-11, which would be more than an order of magnitude better than the previous best measurement. It would decrease the uncertainty in the tritium beta decay Q-value (an important parameter in the ongoing search for the neutrino mass by experiments such as KATRIN) by the same factor. In order to emphasize the specialization of our experiment with regard to Tritium and ^3Helium, it was renamed to ``THe-Trap''. THe-Trap features a double Penning-trap for rapid ion exchange, an external ion source to minimize trap contamination, a novel Zener-based voltage source, and active as well as passive stabilization of temperature, pressure and the magnetic field of the superconducting magnet. An overview of the project and a report on the recent progress will be given.

  18. Universal collisional activation ion trap mass spectrometry

    DOEpatents

    McLuckey, S.A.; Goeringer, D.E.; Glish, G.L.

    1993-04-27

    A universal collisional activation ion trap comprises an ion trapping means containing a bath gas and having connected thereto a noise signal generator. A method of operating a universal collisional activation ion trap comprises the steps of: providing an ion trapping means; introducing into the ion trapping means a bath gas; and, generating a noise signal within the ion trapping means; introducing into the ion trapping means a substance that, when acted upon by the noise signal, undergoes collisional activation to form product ions.

  19. Universal collisional activation ion trap mass spectrometry

    DOEpatents

    McLuckey, Scott A.; Goeringer, Douglas E.; Glish, Gary L.

    1993-01-01

    A universal collisional activation ion trap comprises an ion trapping means containing a bath gas and having connected thereto a noise signal generator. A method of operating a universal collisional activation ion trap comprises the steps of: providing an ion trapping means; introducing into the ion trapping means a bath gas; and, generating a noise signal within the ion trapping means; introducing into the ion trapping means a substance that, when acted upon by the noise signal, undergoes collisional activation to form product ions.

  20. Effect of bait in live trapping Peromyscus

    USGS Publications Warehouse

    Stickel, L.F.

    1948-01-01

    SUMMARY: Evidence from live trapping tests indicated that Peromyscus leucopus did not leave their home ranges because of the attraction of trap bait in nearby areas. A trap line down the center of a heavily live-trapped area caught as many mice before the area trapping as afterward. Thus, there was reason to believe that the area trapping did not serve to pre-bait the mice. Two unbaited lines of live traps caught an equal number of Peromyscus. When one line was baited with rolled oats and peanut butter the efficiency of the traps was improved to the extent that the baited line captured more than twice as many mice as the unbaited line. It is concluded that for the species and habitat tested it is safe to make population calculations based on the assumption that the animals remain within their home ranges and do not tend to move into the trapped area because of the attraction of the trap bait.

  1. Live trapping of hawks and owls

    USGS Publications Warehouse

    Stewart, R.E.; Cope, J.B.; Robbins, C.S.

    1945-01-01

    1. Hawks of six species (80 individuals) and owls of five species (37 individuals) were trapped for banding from November 1, 1943, to. May 26,1944. 2. In general, pole traps proved better than hand-operated traps or automatic traps using live bait. 3. Verbail pole traps proved very efficient, and were much more humane than padded steel traps because they rarely injured a captured bird. 4: Unbaited Verbail traps took a variety of raptors, in rough proportion to their local abundance, although slightly more of beneficial species were caught than of harmful types. 5. Hawks and owls were retrapped more readily in Verbail traps than in other types tried. 6. The number of song birds caught in Verbail traps was negligible. 7. Crows and vultures were not taken in Verbail traps, but possibly could be caught with bait.

  2. Comparison of emergence traps of different shape and translucency in the trapping of Culicoides (Diptera: Ceratopogonidae).

    PubMed

    Steinke, S; Lühken, R; Kroischke, F; Timmermann, E; Kiel, E

    2016-06-15

    Various types of emergence traps are available for investigations of the breeding habitats of Culicoides (Diptera: Ceratopogonidae). In order to assess the potential impact of the trap design on the trapping success, we compared the efficiency of opaque and white (more translucent) emergence traps and two trap shapes (cone-shaped and quadratic), to sample Culicoides emerging from cowpats. Significantly higher numbers of Culicoides chiopterus and Culicoides dewulfi were trapped with opaque traps, while there was no obvious effect of the trap shape. There were no distinct differences in the microclimate among different trap types. PMID:27198792

  3. Efficient sampling of ground-dwelling arthropods using pitfall traps in arid steppes.

    PubMed

    Cheli, Germán H; Corley, Juan C

    2010-01-01

    Pitfall trapping is probably the most frequently used method for sampling ground-dwelling arthropods. While the capture of specimens in pitfall traps largely depends on the number of individuals in the sampled area, trap design and trapping effort for a given environment, can also affect sampling success. The aim of this study was to determine the best pitfall trapping design for collecting ground-dwelling arthropods in the wind-blown and cold arid steppe areas of Patagonia. We tested four designs of traps, six types of preservative and different times of activation as well as the quantity of traps. Both preservation attributes and sampling efficiency differed between different trap designs and fluids compared. We conclude that in order to obtain reliable data on the structure of a community of ground-dwelling arthropods in Patagonia, at least three pitfall traps per experimental unit are required. In addition, traps should be opened for a minimum of 10 days filled with 300 ml of 30% ethylene glycol. We also suggested the use of a simple trap design (i. e. without funnel or roof). We believe these findings will contribute to more appropriate sampling of the ground dwelling fauna of Patagonia as well as other arid areas, leading to more reliable diversity studies. PMID:21271057

  4. Arraying single microbeads in microchannels using dielectrophoresis-assisted mechanical traps

    NASA Astrophysics Data System (ADS)

    Tirapu-Azpiroz, Jaione; Temiz, Yuksel; Delamarche, Emmanuel

    2015-11-01

    Manipulating and immobilizing single microbeads in flowing fluids is relevant for biological assays and chemical tests but typically requires expensive laboratory equipment and trapping mechanisms that are not reversible. In this paper, we present a highly efficient and reversible mechanism for trapping microbeads by combining dielectrophoresis (DEP) with mechanical traps. The integration of planar electrodes and mechanical traps in a microchannel enables versatile manipulation of microbeads via DEP for their docking in recessed structures of mechanical traps. By simulating the combined effects of the hydrodynamic drag and DEP forces on microbeads, we explore a configuration of periodic traps where the beads are guided by the electrodes and immobilized in recess areas of the traps. The design of the electrode layout and operating configuration are optimized for the efficient trapping of single microbeads. We demonstrated the predicted guiding and trapping effectiveness of the design as well as the reversibility of the system on 10 μm polystyrene beads. Experimental verification used an array of 96 traps in an area of 420 × 420 μm2, reaching a trapping efficiency of 63% when 7 Vpp is applied to the electrodes under 80 nl min-1 flow rate conditions, and 98% of bead release when the voltage is turned off.

  5. Multiphoton polymerization using optical trap assisted nanopatterning

    NASA Astrophysics Data System (ADS)

    Leitz, Karl-Heinz; Tsai, Yu-Cheng; Flad, Florian; Schäffer, Eike; Quentin, Ulf; Alexeev, Ilya; Fardel, Romain; Arnold, Craig B.; Schmidt, Michael

    2013-06-01

    In this letter, we show the combination of multiphoton polymerization and optical trap assisted nanopatterning (OTAN) for the additive manufacturing of structures with nanometer resolution. User-defined patterns of polymer nanostructures are deposited on a glass substrate by a 3.5 μm polystyrene sphere focusing IR femtosecond laser pulses, showing minimum feature sizes of λ/10. Feature size depends on the applied laser fluence and the bead surface spacing. A finite element model describes the intensity enhancement in the microbead focus. The results presented suggest that OTAN in combination with multiphoton processing is a viable technique for additive nanomanufacturing with sub-diffraction-limited resolution.

  6. A comparison of pitfall traps with bait traps for studying leaf litter ant communities.

    PubMed

    Wang, C; Strazanac, J; Butler, L

    2001-06-01

    A comparison of pitfall traps with bait traps for sampling leaf litter ants was studied in oak-dominated mixed forests during 1995-1997. A total of 31,732 ants were collected from pitfall traps and 54,694 ants were collected from bait traps. They belonged to four subfamilies, 17 genera, and 32 species. Bait traps caught 29 species, whereas pitfall traps caught 31 species. Bait traps attracted one species not found in pitfall traps, but missed three of the species collected with pitfall traps. Collections from the two sampling methods showed differences in species richness, relative abundance, diversity, and species accumulation curves. Pitfall traps caught significantly more ant species per plot than did bait traps. The ant species diversity obtained from pitfall traps was higher than that from bait traps. Bait traps took a much longer time to complete an estimate of species richness than did pitfall traps. Little information was added to pitfall trapping results by the bait trapping method. The results suggested that the pitfall trapping method is superior to the bait trapping method for leaf litter ant studies. Species accumulation curves showed that sampling of 2,192+/-532 ants from six plots by pitfall traps provided a good estimation of ant species richness under the conditions of this study. PMID:11425034

  7. Determining average path length and average trapping time on generalized dual dendrimer

    NASA Astrophysics Data System (ADS)

    Li, Ling; Guan, Jihong

    2015-03-01

    Dendrimer has wide number of important applications in various fields. In some cases during transport or diffusion process, it transforms into its dual structure named Husimi cactus. In this paper, we study the structure properties and trapping problem on a family of generalized dual dendrimer with arbitrary coordination numbers. We first calculate exactly the average path length (APL) of the networks. The APL increases logarithmically with the network size, indicating that the networks exhibit a small-world effect. Then we determine the average trapping time (ATT) of the trapping process in two cases, i.e., the trap placed on a central node and the trap is uniformly distributed in all the nodes of the network. In both case, we obtain explicit solutions of ATT and show how they vary with the networks size. Besides, we also discuss the influence of the coordination number on trapping efficiency.

  8. Buffer gas loading and Doppler cooling of strontium ions in a planar Paul trap

    NASA Astrophysics Data System (ADS)

    Clark, Robert; Brown, Kenneth; Labaziewicz, Jaroslaw; Richerme, Philip; Chuang, Isaac

    2006-05-01

    Traditional geometries for ion traps involve three dimensional structures which may be difficult to assemble in complex geometries demanded by applications such as large-scale quantum computation. Planar Paul traps provide an alternative approach [Chiaverini et. al., Quant. Inf. Comput. 5, 419 (2005)], in which the RF and DC electrodes are placed in a single plane, providing simpler fabrication and greater optical access to the trapped ions. We have designed and constructed a planar Paul trap using copper electrodes on a Rogers 4350 substrate. Strontium ions were loaded into this structure at UHV, and also at high vacuum using helium buffer gas cooling. The temperature of the ion cloud as a function of buffer gas pressure is compared to predictions from a model which includes ion-helium collisions and RF heating. The measured trap parameters, including secular frequencies, trap depth, and RF heating rates, agree well with a pseudopotential model based on finite-element electrostatic calculations.

  9. Thermodynamic Theory of Spherically Trapped Coulomb Clusters

    NASA Astrophysics Data System (ADS)

    Wrighton, Jeffrey; Dufty, James; Bonitz, Michael; K"{A}Hlert, Hanno

    2009-11-01

    The radial density profile of a finite number of identical charged particles confined in a harmonic trap is computed over a wide ranges of temperatures (Coulomb coupling) and particle numbers. At low temperatures these systems form a Coulomb crystal with spherical shell structure which has been observed in ultracold trapped ions and in dusty plasmas. The shell structure is readily reproduced in simulations. However, analytical theories which used a mean field approachfootnotetext[1]C. Henning et al., Phys. Rev. E 74, 056403 (2006) or a local density approximationfootnotetext[2]C. Henning et al., Phys. Rev. E 76, 036404 (2007) have, so far, only been able to reproduce the average density profile. Here we present an approach to Coulomb correlations based on the hypernetted chain approximation with additional bridge diagrams. It is demonstrated that this model reproduces the correct shell structure within a few percent and provides the basis for a thermodynamic theory of Coulomb clusters in the strongly coupled fluid state.footnotetext[3]J. Wrighton, J.W. Dufty, H. K"ahlert and M. Bonitz, J. Phys. A 42, 214052 (2009) and Phys. Rev. E (2009) (to be submitted)

  10. Trapping effects in a self-gravitating quantum dusty plasma

    NASA Astrophysics Data System (ADS)

    Ayub, M.; Shah, H. A.; Qureshi, M. N. S.

    2011-10-01

    The effects of trapping on the nonlinear properties of dust-acoustic waves in an unmagnitized collisionless self-gravitating plasma were studied by treating the ions to be Maxwellian, the dust to be cold and the electrons to be degenerate. The effect of trapping and the gravitational potential on the nonlinear structures was investigated by employing the Sagdeev potential approach, which shows that the features of solitary wave structures are affected by changes in Mach number as well as ion temperature and other physical parameters of the system. Modulational stability analysis is also presented, and the regions of stability and instability are discussed.

  11. Evidence for hidden quadrupolar fluctuations behind the octupole order in Ce0.7La0.3B6 from resonant x-ray diffraction in magnetic fields

    NASA Astrophysics Data System (ADS)

    Matsumura, Takeshi; Michimura, Shinji; Inami, Toshiya; Otsubo, Toru; Tanida, Hiroshi; Iga, Fumitoshi; Sera, Masafumi

    2014-01-01

    The multipole ordered phase in Ce0.7La0.3B6, emerging below 1.5 K and named phase IV, has been studied by resonant x-ray diffraction in magnetic fields. By utilizing diamond x-ray phase plates to rotate the incident linear polarization and a conventional crystal analyzer system, full linear polarization analysis has been performed to identify the order parameters. The analysis shows that the Γ5g(Oyz, Ozx, Oxy) quadrupoles are more induced by the field than the Γ3g (O20 and O22) quadrupoles on the Γ5u (Tx+y +zβ) antiferro-octupole order in phase IV. The problem is that this result is contradictory to a mean-field calculation, which inevitably gives the Γ3g quadrupole as the main induced moment. This result indicates that the Γ5g quadrupole order is close in energy. We consider that a large fluctuation of the Γ5g quadrupole is hidden behind the primary ordering of the Γ5u octupole and that the multipolar fluctuation significantly affects the ordering phenomenon.

  12. Trapping biases of Culex torrentium and Culex pipiens revealed by comparison of captures in CDC traps, ovitraps, and gravid traps.

    PubMed

    Hesson, Jenny C; Ignell, Rickard; Hill, Sharon R; Östman, Örjan; Lundström, Jan O

    2015-06-01

    We evaluate three trapping methods for their effectiveness at capturing Culex pipiens and Culex torrentium, both enzootic vectors of bird-associated viruses in Europe. The comparisons, performed in two regions in Sweden, were among CDC traps baited with carbon dioxide, gravid traps, and ovitraps baited with hay infusion. The proportions of the two Culex species in a catch differed between trap types, with CDC traps catching a lower proportion of Cx. torrentium than both gravid traps and ovitraps. Between gravid traps and ovitraps, there was no difference in the proportions of the two species. The results indicate that Cx. torrentium may go undetected or underestimated compared to Cx. pipiens when using carbon dioxide baited CDC traps. The new insight of trap bias presented here adds an important dimension to consider when investigating these vectors of bird-associated viruses in the field. PMID:26047196

  13. Trapping of gas mixtures by amorphous water ice

    NASA Technical Reports Server (NTRS)

    Bar-Nun, A.; Kleinfeld, I.; Kochavi, E.; Owen, T. (Principal Investigator)

    1988-01-01

    Our studies on gas trapping in amorphous water ice at 24-100 K were extended, by using mixtures of CH4, CO, N2, and Ar, rather than single gases. In 1:1 gas:(water vapor) mixtures, the competition among these gases on the available sites in the ice showed that the trapping capacity for the various gases is determined not only by the structure and dynamics of the ice, but is also influenced by the gas itself. Whereas at 24-35 K all four gases are trapped in the ice indiscriminantly, at 50-75 K there is a clear enhancement, in the order of CH4 > CO > N2 > or approximately Ar. This order is influenced by the gas-water interaction energy, the size of the trapped gas atom or molecule, the type of clathrate-hydrate formed (I or II) and, possibly, other factors. It seems that the gas can be trapped in the amorphous ice in several different locations, each being affected in a different way by the deposition temperature and gas composition. Once a gas atom or molecule is trapped in a specific location, it is predestined to emerge in one of eight different temperature ranges, which are associated with changes in the ice. The experimentally observed enhancements, together with the findings on the gas composition of comet Halley, might enable an estimation of the gas composition in the region of comet formation.

  14. Surface recombination statistics at traps

    NASA Astrophysics Data System (ADS)

    Landsberg, P. T.; Abrahams, M. S.

    1983-09-01

    The Shockley-Read-Hall recombination statistics was recently generalised by Dhariwal, Kothari and Jain to include the effect of a finite time of relaxation before the captured carrier settles into its ground state, and by Landsberg to allow for Auger effects and so-called "extra" carriers supplied to the semiconductor from the outside. The combined result of these effects is studied here theoretically, together with the consideration of a simple distribution of trap states. It is found that the surface recombination velocity s has the usual minimum in the near intrinsic state and that s passes through a maximum as a function of excess electron concentration. Both extrema are enhanced if the trap states are distributed over an energy range. Experimental plots of s as a function of excess electron and hole concentrations should yield insight concerning the numerical importance of (a) Auger effects with the participation of traps and (b) relaxation times.

  15. A study of charge trapping in the Al-Al 2O 3-Si, MIS system

    NASA Astrophysics Data System (ADS)

    Kolk, J.; Heasell, E. L.

    1980-02-01

    An experimental procedure, which maintains an almost constant electric field at the insulator-silicon interface, is used to study the trapping of electrons injected into the Aluminum-oxide gate insulator of a MISFET structure. A simple model, consisting of a finite number of traps, located at or adjacent to the insulator-silicon interface is consistent with the experimental observations. Additional experiments in which the insulator current is measured directly allow the capture parameter of these traps to be calculated.

  16. Trapping Single Molecules by Dielectrophoresis

    NASA Astrophysics Data System (ADS)

    Hölzel, Ralph; Calander, Nils; Chiragwandi, Zackary; Willander, Magnus; Bier, Frank F.

    2005-09-01

    We have trapped single protein molecules of R-phycoerythrin in an aqueous solution by an alternating electric field. A radio frequency voltage is applied to sharp nanoelectrodes and hence produces a strong electric field gradient. The resulting dielectrophoretic forces attract freely diffusing protein molecules. Trapping takes place at the electrode tips. Switching off the field immediately releases the molecules. The electric field distribution is computed, and from this the dielectrophoretic response of the molecules is calculated using a standard polarization model. The resulting forces are compared to the impact of Brownian motion. Finally, we discuss the experimental observations on the basis of the model calculations.

  17. Salisbury hospital's steam trap success.

    PubMed

    Baillie, Jonathan

    2011-03-01

    With the Carbon Reduction Commitment now fully in force, and the NHS tasked with achieving tough carbon emission reduction targets in line with both UK and EU mandates, healthcare estates teams across the country are seeking cost-effective ways to reduce energy consumption. Against this backdrop, Salisbury District Hospital has implemented a concerted energy-saving programme, key elements of which include replacing existing bucket steam traps with higher performing, lower maintenance, and more effective GEM venturi steam traps from Thermal Energy International (TEI), installing a new gas CHP engine, and looking into fitting a TEI condensate economiser system. PMID:21485315

  18. Dysprosium magneto-optical traps

    SciTech Connect

    Youn, Seo Ho; Lu Mingwu; Ray, Ushnish; Lev, Benjamin L.

    2010-10-15

    Magneto-optical traps (MOTs) of highly magnetic lanthanides open the door to explorations of novel phases of strongly correlated matter such as lattice supersolids and quantum liquid crystals. We recently reported the first MOTs of the five high-abundance isotopes of the most magnetic atom, dysprosium. Described here are details of the experimental technique employed for repumper-free Dy MOTs containing up to half a billion atoms. Extensive characterization of the MOTs' properties--population, temperature, loading, metastable decay dynamics, and trap dynamics--is provided.

  19. Microwave regenerated particulate trap

    SciTech Connect

    McDonald, A.C. Jr.; Yonushonis, T.M.; Haberkamp, W.C.; Mako, F.; Len, L.K,; Silberglitt, R.; Ahmed, I.

    1997-12-31

    It has been demonstrated that a fibrous particulate filter can extract particulate matter from the diesel exhaust. However, additional engineering efforts remains to achieve the design target of 90%. It has also be shown that with minor modifications magnetrons produced for home ovens can endure a simulated diesel operating environment. Much work remains to develop a robust product ready to complete extensive engine testing and evaluation. These efforts include: (1) additional environmental testing of magnetrons; (2) vibration testing of the filter in the housing; (3) evaluating alternative methods/designs to seal the center bore; and (4) determining the optimum coating thickness that provides sufficient structural integrity while maintaining rapid heating rates.

  20. Bacteria can mobilize nematode-trapping fungi to kill nematodes

    PubMed Central

    Wang, Xin; Li, Guo-Hong; Zou, Cheng-Gang; Ji, Xing-Lai; Liu, Tong; Zhao, Pei-Ji; Liang, Lian-Ming; Xu, Jian-Ping; An, Zhi-Qiang; Zheng, Xi; Qin, Yue-Ke; Tian, Meng-Qing; Xu, You-Yao; Ma, Yi-Cheng; Yu, Ze-Fen; Huang, Xiao-Wei; Liu, Shu-Qun; Niu, Xue-Mei; Yang, Jin-Kui; Huang, Ying; Zhang, Ke-Qin

    2014-01-01

    In their natural habitat, bacteria are consumed by bacterivorous nematodes; however, they are not simply passive preys. Here we report a defensive mechanism used by certain bacteria to mobilize nematode-trapping fungi to kill nematodes. These bacteria release urea, which triggers a lifestyle switch in the fungus Arthrobotrys oligospora from saprophytic to nematode–predatory form; this predacious form is characterized by formation of specialized cellular structures or ‘traps’. The bacteria significantly promote the elimination of nematodes by A. oligospora. Disruption of genes involved in urea transport and metabolism in A. oligospora abolishes the urea-induced trap formation. Furthermore, the urea metabolite ammonia functions as a signal molecule in the fungus to initiate the lifestyle switch to form trap structures. Our findings highlight the importance of multiple predator–prey interactions in prey defense mechanisms. PMID:25514608