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Sample records for optically controlled three-dimensional

  1. Design of hybrid optical tweezers system for controlled three-dimensional micromanipulation

    NASA Astrophysics Data System (ADS)

    Tanaka, Yoshio; Tsutsui, Shogo; Kitajima, Hiroyuki

    2013-04-01

    Three-dimensional (3D) micro/nano-manipulation using optical tweezers is a significant technique for various scientific fields ranging from biology to nanotechnology. For the dynamic handling of multiple/individual micro-objects in a true 3D working space, we present an improved hybrid optical tweezers system consisting of two multibeam techniques. These two techniques include the generalized phase contrast method with a spatial light modulator and the time-shared scanning method with a two-axis steering mirror and an electrically focus-tunable lens. Unlike our previously reported system that could only handle micro-objects in a two and half dimensional working space, the present system has high versatility for controlled manipulation of multiple micro-objects in a true 3D working space. The controlled rotation of five beads forming a pentagon, that of four beads forming a tetrahedron about arbitrary axes, and the fully automated assembly and subsequent 3D translation of micro-bead arrays are successfully demonstrated as part of the 3D manipulation experiment.

  2. Three-dimensional rearrangement of single atoms using actively controlled optical microtraps.

    PubMed

    Lee, Woojun; Kim, Hyosub; Ahn, Jaewook

    2016-05-01

    We propose and demonstrate three-dimensional rearrangements of single atoms. In experiments performed with single 87Rb atoms in optical microtraps actively controlled by a spatial light modulator, we demonstrate various dynamic rearrangements of up to N = 9 atoms including rotation, 2D vacancy filling, guiding, compactification, and 3D shuffling. With the capability of a phase-only Fourier mask to generate arbitrary shapes of the holographic microtraps, it was possible to place single atoms at arbitrary geometries of a few μm size and even continuously reconfigure them by conveying each atom. For this purpose, we loaded a series of computer-generated phase masks in the full frame rate of 60 Hz of the spatial light modulator, so the animation of phase mask transformed the holographic microtraps in real time, driving each atom along the assigned trajectory. Possible applications of this method of transformation of single atoms include preparation of scalable quantum platforms for quantum computation, quantum simulation, and quantum many-body physics. PMID:27137595

  3. Three dimensional optic tissue culture and process

    NASA Technical Reports Server (NTRS)

    Spaulding, Glenn F. (Inventor); Prewett, Tacey L. (Inventor); Goodwin, Thomas J. (Inventor); Francis, Karen M. (Inventor); Cardwell, Delmar R. (Inventor); Oconnor, Kim (Inventor); Fitzgerald, Wendy S. (Inventor); Aten, Laurie A. (Inventor)

    1994-01-01

    A process for artificially producing three-dimensional optic tissue has been developed. The optic cells are cultured in a bioreactor at low shear conditions. The tissue forms normal, functional tissue organization and extracellular matrix.

  4. Three Dimensional Optic Tissue Culture and Process

    NASA Technical Reports Server (NTRS)

    OConnor, Kim C. (Inventor); Spaulding, Glenn F. (Inventor); Goodwin, Thomas J. (Inventor); Aten, Laurie A. (Inventor); Francis, Karen M. (Inventor); Caldwell, Delmar R. (Inventor); Prewett, Tacey L. (Inventor); Fitzgerald, Wendy S. (Inventor)

    1999-01-01

    A process for artificially producing three-dimensional optic tissue has been developed. The optic cells are cultured in a bioireactor at low shear conditions. The tissue forms as normal, functional tissue grows with tissue organization and extracellular matrix formation.

  5. Multiparallel Three-Dimensional Optical Microscopy

    NASA Technical Reports Server (NTRS)

    Nguyen, Lam K.; Price, Jeffrey H.; Kellner, Albert L.; Bravo-Zanoquera, Miguel

    2010-01-01

    Multiparallel three-dimensional optical microscopy is a method of forming an approximate three-dimensional image of a microscope sample as a collection of images from different depths through the sample. The imaging apparatus includes a single microscope plus an assembly of beam splitters and mirrors that divide the output of the microscope into multiple channels. An imaging array of photodetectors in each channel is located at a different distance along the optical path from the microscope, corresponding to a focal plane at a different depth within the sample. The optical path leading to each photodetector array also includes lenses to compensate for the variation of magnification with distance so that the images ultimately formed on all the photodetector arrays are of the same magnification. The use of optical components common to multiple channels in a simple geometry makes it possible to obtain high light-transmission efficiency with an optically and mechanically simple assembly. In addition, because images can be read out simultaneously from all the photodetector arrays, the apparatus can support three-dimensional imaging at a high scanning rate.

  6. Three-Dimensional Optical Coherence Tomography

    NASA Technical Reports Server (NTRS)

    Gutin, Mikhail; Wang, Xu-Ming; Gutin, Olga

    2009-01-01

    Three-dimensional (3D) optical coherence tomography (OCT) is an advanced method of noninvasive infrared imaging of tissues in depth. Heretofore, commercial OCT systems for 3D imaging have been designed principally for external ophthalmological examination. As explained below, such systems have been based on a one-dimensional OCT principle, and in the operation of such a system, 3D imaging is accomplished partly by means of a combination of electronic scanning along the optical (Z) axis and mechanical scanning along the two axes (X and Y) orthogonal to the optical axis. In 3D OCT, 3D imaging involves a form of electronic scanning (without mechanical scanning) along all three axes. Consequently, the need for mechanical adjustment is minimal and the mechanism used to position the OCT probe can be correspondingly more compact. A 3D OCT system also includes a probe of improved design and utilizes advanced signal- processing techniques. Improvements in performance over prior OCT systems include finer resolution, greater speed, and greater depth of field.

  7. Three-dimensional optical holography using a plasmonic metasurface

    PubMed Central

    Huang, Lingling; Chen, Xianzhong; Mühlenbernd, Holger; Zhang, Hao; Chen, Shumei; Bai, Benfeng; Tan, Qiaofeng; Jin, Guofan; Cheah, Kok-Wai; Qiu, Cheng-Wei; Li, Jensen; Zentgraf, Thomas; Zhang, Shuang

    2013-01-01

    Benefitting from the flexibility in engineering their optical response, metamaterials have been used to achieve control over the propagation of light to an unprecedented level, leading to highly unconventional and versatile optical functionalities compared with their natural counterparts. Recently, the emerging field of metasurfaces, which consist of a monolayer of photonic artificial atoms, has offered attractive functionalities for shaping wave fronts of light by introducing an abrupt interfacial phase discontinuity. Here we realize three-dimensional holography by using metasurfaces made of subwavelength metallic nanorods with spatially varying orientations. The phase discontinuity takes place when the helicity of incident circularly polarized light is reversed. As the phase can be continuously controlled in each subwavelength unit cell by the rod orientation, metasurfaces represent a new route towards high-resolution on-axis three-dimensional holograms with a wide field of view. In addition, the undesired effect of multiple diffraction orders usually accompanying holography is eliminated.

  8. Three-dimensional invisibility cloak at optical wavelengths.

    PubMed

    Ergin, Tolga; Stenger, Nicolas; Brenner, Patrice; Pendry, John B; Wegener, Martin

    2010-04-16

    We have designed and realized a three-dimensional invisibility-cloaking structure operating at optical wavelengths based on transformation optics. Our blueprint uses a woodpile photonic crystal with a tailored polymer filling fraction to hide a bump in a gold reflector. We fabricated structures and controls by direct laser writing and characterized them by simultaneous high-numerical-aperture, far-field optical microscopy and spectroscopy. A cloaking operation with a large bandwidth of unpolarized light from 1.4 to 2.7 micrometers in wavelength is demonstrated for viewing angles up to 60 degrees. PMID:20299551

  9. Observation of three dimensional optical rogue waves through obstacles

    SciTech Connect

    Leonetti, Marco; Conti, Claudio

    2015-06-22

    We observe three-dimensional rogue waves in the speckle distribution of a spatially modulated optical beam. Light is transmitted beyond a partially reflecting obstacle generating optical rogue waves at a controlled position in the shadow of the barrier. When the barrier transmits only 0.07% of the input laser power, we observe the mostly localized event. These results demonstrate that an optimum amount of spatial non-homogeneity maximizes the probability of a gigantic event while the technique we exploit enables to control light behind a fully reflective wall.

  10. Three dimensional time reversal optical tomography

    NASA Astrophysics Data System (ADS)

    Wu, Binlin; Cai, W.; Alrubaiee, M.; Xu, M.; Gayen, S. K.

    2011-03-01

    Time reversal optical tomography (TROT) approach is used to detect and locate absorptive targets embedded in a highly scattering turbid medium to assess its potential in breast cancer detection. TROT experimental arrangement uses multi-source probing and multi-detector signal acquisition and Multiple-Signal-Classification (MUSIC) algorithm for target location retrieval. Light transport from multiple sources through the intervening medium with embedded targets to the detectors is represented by a response matrix constructed using experimental data. A TR matrix is formed by multiplying the response matrix by its transpose. The eigenvectors with leading non-zero eigenvalues of the TR matrix correspond to embedded objects. The approach was used to: (a) obtain the location and spatial resolution of an absorptive target as a function of its axial position between the source and detector planes; and (b) study variation in spatial resolution of two targets at the same axial position but different lateral positions. The target(s) were glass sphere(s) of diameter ~9 mm filled with ink (absorber) embedded in a 60 mm-thick slab of Intralipid-20% suspension in water with an absorption coefficient μa ~ 0.003 mm-1 and a transport mean free path lt ~ 1 mm at 790 nm, which emulate the average values of those parameters for human breast tissue. The spatial resolution and accuracy of target location depended on axial position, and target contrast relative to the background. Both the targets could be resolved and located even when they were only 4-mm apart. The TROT approach is fast, accurate, and has the potential to be useful in breast cancer detection and localization.

  11. Three-dimensional theory of the magneto-optical trap

    SciTech Connect

    Prudnikov, O. N. Taichenachev, A. V.; Yudin, V. I.

    2015-04-15

    The kinetics of atoms in a three-dimensional magneto-optical trap (MOT) is considered. A three-dimensional MOT model has been constructed for an atom with the optical transition J{sub g} = 0 → J{sub e} = 1 (J{sub g,} {sub e} is the total angular momentum in the ground and excited states) in the semiclassical approximation by taking into account the influence of the relative phases of light fields on the kinetics of atoms. We show that the influence of the relative phases can be neglected only in the limit of low light field intensities. Generally, the choice of relative phases can have a strong influence on the kinetics of atoms in a MOT.

  12. Ghost imaging for three-dimensional optical security

    SciTech Connect

    Chen, Wen Chen, Xudong

    2013-11-25

    Ghost imaging has become increasingly popular in quantum and optical application fields. Here, we report three-dimensional (3D) optical security using ghost imaging. The series of random phase-only masks are sparsified, which are further converted into particle-like distributions placed in 3D space. We show that either an optical or digital approach can be employed for the encoding. The results illustrate that a larger key space can be generated due to the application of 3D space compared with previous works.

  13. Three-dimensional metallic photonic crystals with optical bandgaps.

    PubMed

    Vasilantonakis, Nikos; Terzaki, Konstantina; Sakellari, Ioanna; Purlys, Vytautas; Gray, David; Soukoulis, Costas M; Vamvakaki, Maria; Kafesaki, Maria; Farsari, Maria

    2012-02-21

    The fabrication of fully three-dimensional photonic crystals with a bandgap at optical wavelengths is demonstrated by way of direct femtosecond laser writing of an organic-inorganic hybrid material with metal-binding moieties, and selective silver coating using electroless plating. The crystals have 600-nm intralayer periodicity and sub-100 nm features, and they exhibit well-defined diffraction patterns. PMID:22278944

  14. Three-dimensional multifunctional optical coherence tomography for skin imaging

    NASA Astrophysics Data System (ADS)

    Li, En; Makita, Shuichi; Hong, Young-Joo; Kasaragod, Deepa; Sasaoka, Tomoko; Yamanari, Masahiro; Sugiyama, Satoshi; Yasuno, Yoshiaki

    2016-02-01

    Optical coherence tomography (OCT) visualizes cross-sectional microstructures of biological tissues. Recent developments of multifunctional OCT (MF-OCT) provides multiple optical contrasts which can reveal currently unknown tissue properties. In this contribution we demonstrate multifunctional OCT specially designed for dermatological investigation. And by utilizing it to measure four different body parts of in vivo human skin, three-dimensional scattering OCT, OCT angiography, polarization uniformity tomography, and local birefringence tomography images were obtained by a single scan. They respectively contrast the structure and morphology, vasculature, melanin content and collagen traits of the tissue.

  15. Three-dimensional optical encryption based on ptychography

    NASA Astrophysics Data System (ADS)

    Zhang, Jun; Li, Tuo; Wang, Yali; Qiao, Liang; Yang, Xiubo; Shi, Yishi

    2015-10-01

    We propose a novel optical encryption system for three-dimension imaging combined with three-dimension Ptychography. Employing the proposed cryptosystem, a 3D object can be encrypted and decrypted successfully. Compared with the conventional three-dimensional cryptosystem, not only encrypting the pure amplitude 3D object is available, but also the encryption of complex amplitude 3D object is achievable. Considering that the probes overlapping with each other is the crucial factor in ptychography, their complex-amplitude functions can serve as a kind of secret keys that lead to the enlarged key space and the enhanced system security. Varies of simulation results demonstrate that the feasibility and robust of the cryptosystem. Furthermore, the proposed system could also be used for other potential applications, such as three-dimensional information hiding and multiple images encryption.

  16. Optical Security Card by Three-dimensional Random Phase Distribution

    NASA Astrophysics Data System (ADS)

    Matoba, Osamu; Nitta, Kouichi

    2007-10-01

    An optical security card based on a three-dimensional (3D) phase object is presented. This card enables us to develop a personal authentification system and secure data storage in a highly scattering medium. The authentification is implemented by the correlation between a speckle pattern of the 3D phase object and stored speckle patterns. For secure data storage, absorption distribution is involved in a scattering volume medium. Appropriate user can only reconstruct the absorption distribution by solving inverse problem. Experimental and numerical results are presented to show the effectiveness of the proposed system.

  17. Tunable optical anisotropy in three-dimensional photonic crystals

    SciTech Connect

    Che Ming; Li Zhiyuan; Liu Rongjuan

    2007-08-15

    Artificial optical birefringence can be realized in three-dimensional photonic crystals with a uniaxial structural symmetry: e.g., woodpile photonic crystals with a tetragonal lattice structure in the long-wavelength limit. The ordinary and extraordinary indices of refraction are determined from calculation of the reflection coefficient for a plane wave incident on the surface of a semi-infinite photonic crystal at different angles. We find that the anisotropy can be widely tuned by simply changing the width and thickness of the dielectric rod. A large relative negative anisotropy over 33% is found. A transition from positive anisotropy to negative anisotropy can be readily achieved. At certain parameters, a structurally anisotropic nanostructure can behave like an optically isotropic medium. Our study opens a window to use artificial nanostructures to create an arbitrary optical anisotropy that is not possible in natural crystals.

  18. Photopolymer-based three-dimensional optical waveguide devices

    NASA Astrophysics Data System (ADS)

    Kagami, M.; Yamashita, T.; Yonemura, M.; Kawasaki, A.; Watanabe, O.; Tomiki, M.

    2012-02-01

    Photopolymer based three-dimensional (3D) waveguide devices are very attractive in low-cost optical system integration. Especially, Light-Induced Self-Written (LISW) technology is suitable for this application, and the technology enables low-loss 3D optical circuitry formation from an optical fiber tip which soaked in photopolymer solution by employing its photo-polymerization due to own irradiation from the fiber tip. This technology is expected drastic mounting cost reduction in fields of micro-optic and hybrid integration devices assembly. The principle of the LISW optical waveguides is self-trapping effect of the irradiation flux into the self-organized waveguide, where, used wavelength can be chosen to fit photopolymer's reactivity from visible to infrared. Furthermore, this effect also makes possible grating formation and "optical solder" interconnection. Actually fabricated self-written grating shows well defined deep periodic index contrast and excellent optical property for the wavelength selectivity. And the "optical solder" interconnection realizes a passive optical interconnection between two faceted fibers or devices by the LISW waveguide even if there is a certain amount of gap and a small degree of misalignment exist. The LISW waveguides grow towards each other from both sides to a central point where the opposing beams overlap and are then combined into one waveguide. This distinctive effect is confirmed in all kind optical fibers, such as from a singlemode to 1-mm-corediameter multimode optical fiber. For example of complicated WDM optical transceiver module, mounted a branchedwaveguide and filter elements, effectiveness of LISW technology is outstanding. In assembling and packaging process, neither dicing nor polishing is needed. In this paper, we introduce LISW technology principles and potential application to integrated WDM optical transceiver devices for both of singlemode and multimode system developed in our research group.

  19. Three-dimensional orientation-unlimited polarization encryption by a single optically configured vectorial beam

    PubMed Central

    Li, Xiangping; Lan, Tzu-Hsiang; Tien, Chung-Hao; Gu, Min

    2012-01-01

    The interplay between light polarization and matter is the basis of many fundamental physical processes and applications. However, the electromagnetic wave nature of light in free space sets a fundamental limit on the three-dimensional polarization orientation of a light beam. Although a high numerical aperture objective can be used to bend the wavefront of a radially polarized beam to generate the longitudinal polarization state in the focal volume, the arbitrary three-dimensional polarization orientation of a beam has not been achieved yet. Here we present a novel technique for generating arbitrary three-dimensional polarization orientation by a single optically configured vectorial beam. As a consequence, by applying this technique to gold nanorods, orientation-unlimited polarization encryption with ultra-security is demonstrated. These results represent a new landmark of the orientation-unlimited three-dimensional polarization control of the light–matter interaction. PMID:22893122

  20. Three-dimensional multiway power dividers based on transformation optics

    NASA Astrophysics Data System (ADS)

    Wu, Yong-Le; Zhuang, Zheng; Deng, Li; Liu, Yuan-An

    2016-04-01

    The two-dimensional (2D) or three-dimensional (3D) multiway power dividers based on transformation optical theory are proposed in this paper. It comprises of several nonisotropic mediums and one isotropic medium without any lumped and distributed elements. By using finite embedded coordinate transformations, the incident beam can be split and bent arbitrarily in order to achieve effective power division and transmission. In addition, the location of the split point can be employed to obtain unequal power dividers. Finally, several typical examples of the generalized power divider without limitation in 3D space are performed, which shows that the proposed power divider can implement required functions with arbitrary power division and arbitrary transmission paths. The excellent simulated results verify the novel design method for power dividers.

  1. Three dimensional imaging detector employing wavelength-shifting optical fibers

    DOEpatents

    Worstell, W.A.

    1997-02-04

    A novel detector element structure and method for its use is provided. In a preferred embodiment, one or more inorganic scintillating crystals are coupled through wavelength shifting optical fibers (WLSFs) to position sensitive photomultipliers (PS-PMTs). The superior detector configuration in accordance with this invention is designed for an array of applications in high spatial resolution gamma ray sensing with particular application to SPECT, PET and PVI imaging systems. The design provides better position resolution than prior art devices at a lower total cost. By employing wavelength shifting fibers (WLSFs), the sensor configuration of this invention can operate with a significant reduction in the number of photomultipliers and electronics channels, while potentially improving the resolution of the system by allowing three dimensional reconstruction of energy deposition positions. 11 figs.

  2. Three-dimensional multiway power dividers based on transformation optics.

    PubMed

    Wu, Yong-Le; Zhuang, Zheng; Deng, Li; Liu, Yuan-An

    2016-01-01

    The two-dimensional (2D) or three-dimensional (3D) multiway power dividers based on transformation optical theory are proposed in this paper. It comprises of several nonisotropic mediums and one isotropic medium without any lumped and distributed elements. By using finite embedded coordinate transformations, the incident beam can be split and bent arbitrarily in order to achieve effective power division and transmission. In addition, the location of the split point can be employed to obtain unequal power dividers. Finally, several typical examples of the generalized power divider without limitation in 3D space are performed, which shows that the proposed power divider can implement required functions with arbitrary power division and arbitrary transmission paths. The excellent simulated results verify the novel design method for power dividers. PMID:27091541

  3. Three-dimensional multiway power dividers based on transformation optics

    PubMed Central

    Wu, Yong-Le; Zhuang, Zheng; Deng, Li; Liu, Yuan-An

    2016-01-01

    The two-dimensional (2D) or three-dimensional (3D) multiway power dividers based on transformation optical theory are proposed in this paper. It comprises of several nonisotropic mediums and one isotropic medium without any lumped and distributed elements. By using finite embedded coordinate transformations, the incident beam can be split and bent arbitrarily in order to achieve effective power division and transmission. In addition, the location of the split point can be employed to obtain unequal power dividers. Finally, several typical examples of the generalized power divider without limitation in 3D space are performed, which shows that the proposed power divider can implement required functions with arbitrary power division and arbitrary transmission paths. The excellent simulated results verify the novel design method for power dividers. PMID:27091541

  4. Three dimensional imaging detector employing wavelength-shifting optical fibers

    DOEpatents

    Worstell, William A.

    1997-01-01

    A novel detector element structure and method for its use is provided. In a preferred embodiment, one or more inorganic scintillating crystals are coupled through wavelength shifting optical fibers (WLSFs) to position sensitive photomultipliers (PS-PMTs). The superior detector configuration in accordance with this invention is designed for an array of applications in high spatial resolution gamma ray sensing with particular application to SPECT, PET and PVI imaging systems. The design provides better position resolution than prior art devices at a lower total cost. By employing wavelength shifting fibers (WLSFs), the sensor configuration of this invention can operate with a significant reduction in the number of photomultipliers and electronics channels, while potentially improving the resolution of the system by allowing three dimensional reconstruction of energy deposition positions.

  5. Remote state preparation of three-dimensional optical vortices.

    PubMed

    Su, Ming; Chen, Lixiang

    2014-05-01

    We propose a feasible scheme to remotely prepare three-dimensional (3D) optical vortex lines. Our scheme relies on the complete description of high-dimensional orbital angular momentum (OAM) entanglement in terms of the Laguerre-Gaussian modes. It is theoretically demonstrated that by simply changing the pump beam waist, we can remotely prepare the target photons in the vortex states of 3D interesting morphology, appearing as twisted vortex strands, separated vortex loops, and vortex link or knot. Furthermore, we employ the biphoton Klyshko picture to illustrate the conservation law of the OAM index ℓ and the spreading effect of the radial mode index p, where the Schmidt numbers are calculated to show the high-dimensional capacity of the quantum channels involved in the present remote state preparation. PMID:24921788

  6. Three-dimensional optical vortex and necklace solitons in highly nonlocal nonlinear media

    NASA Astrophysics Data System (ADS)

    Zhong, Wei-Ping; Belić, Milivoj

    2009-02-01

    We demonstrate the existence of localized optical vortex and necklace solitons in three-dimensional (3D) highly nonlocal nonlinear media, both analytically and numerically. The 3D solitons are constructed with the help of Kummer’s functions in spherical coordinates and their unique properties are discussed. The procedure we follow offers ways for generation, control, and manipulation of spatial solitons.

  7. Three dimensional tracking with misalignment between display and control axes

    NASA Technical Reports Server (NTRS)

    Ellis, Stephen R.; Tyler, Mitchell; Kim, Won S.; Stark, Lawrence

    1992-01-01

    Human operators confronted with misaligned display and control frames of reference performed three dimensional, pursuit tracking in virtual environment and virtual space simulations. Analysis of the components of the tracking errors in the perspective displays presenting virtual space showed that components of the error due to visual motor misalignment may be linearly separated from those associated with the mismatch between display and control coordinate systems. Tracking performance improved with several hours practice despite previous reports that such improvement did not take place.

  8. Three-dimensional control of Tetrahymena pyriformis using artificial magnetotaxis

    NASA Astrophysics Data System (ADS)

    Hyung Kim, Dal; Seung Soo Kim, Paul; Agung Julius, Anak; Jun Kim, Min

    2012-01-01

    We demonstrate three-dimensional control with the eukaryotic cell Tetrahymena pyriformis (T. pyriformis) using two sets of Helmholtz coils for xy-plane motion and a single electromagnet for z-direction motion. T. pyriformis is modified to have artificial magnetotaxis with internalized magnetite. To track the cell's z-axis position, intensity profiles of non-motile cells at varying distances from the focal plane are used. During vertical motion along the z-axis, the intensity difference is used to determine the position of the cell. The three-dimensional control of the live microorganism T. pyriformis as a cellular robot shows great potential for practical applications in microscale tasks, such as target transport and cell therapy.

  9. Radiation dosimetry using three-dimensional optical random access memories

    NASA Technical Reports Server (NTRS)

    Moscovitch, M.; Phillips, G. W.

    2001-01-01

    Three-dimensional optical random access memories (3D ORAMs) are a new generation of high-density data storage devices. Binary information is stored and retrieved via a light induced reversible transformation of an ensemble of bistable photochromic molecules embedded in a polymer matrix. This paper describes the application of 3D ORAM materials to radiation dosimetry. It is shown both theoretically and experimentally, that ionizing radiation in the form of heavy charged particles is capable of changing the information originally stored on the ORAM material. The magnitude and spatial distribution of these changes are used as a measure of the absorbed dose, particle type and energy. The effects of exposure on 3D ORAM materials have been investigated for a variety of particle types and energies, including protons, alpha particles and 12C ions. The exposed materials are observed to fluoresce when exposed to laser light. The intensity and the depth of the fluorescence is dependent on the type and energy of the particle to which the materials were exposed. It is shown that these effects can be modeled using Monte Carlo calculations. The model provides a better understanding of the properties of these materials. which should prove useful for developing systems for charged particle and neutron dosimetry/detector applications. c2001 Published by Elsevier Science B.V.

  10. Optical tunneling by arbitrary macroscopic three-dimensional objects

    NASA Astrophysics Data System (ADS)

    Bi, Lei; Yang, Ping; Kattawar, George W.; Mishchenko, Michael I.

    2015-07-01

    Electromagnetic wavefront portions grazing or nearly grazing the surface of a macroscopic particle contribute to the extinction of the incident radiation through a tunneling process similar to the scenario of barrier penetration in quantum mechanics. The aforesaid tunneling contribution, referred to as the edge effect, is critical to a correct depiction of the physical mechanism of electromagnetic extinction. Although an analytical solution for the edge effect in the case of a sphere has been reported in the literature, the counterparts for nonspherical particles remain unknown. The conventional curvature-based formalism of the edge effect breaks down in the case of faceted particles. This paper reports a method, based on the invariant imbedding principle and the Debye expansion technique, to accurately quantify the edge effect associated with an arbitrarily shaped three-dimensional object. The present method also provides a rigorous capability to facilitate the validation of various empirical approximations for electromagnetic extinction. Canonical results are presented to illustrate optical tunneling for two nonspherical geometries.

  11. Three-dimensional tracker for spectral domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Hammer, Daniel X.; Iftimia, Nicusor V.; Bigelow, Chad E.; Ustun, Teoman E.; Bloom, Benjamin; Ferguson, R. Daniel; Milner, Thomas E.

    2007-02-01

    Spectral domain optical coherence tomography (SDOCT) is a relatively new imaging technique that allows high-speed cross-sectional scanning of retinal structures with little motion artifact. However, instrumentation for these systems is not yet fast enough to collect high-density three-dimensional retinal maps free of the adverse effects of lateral eye movements. Low coherence interferometry instruments must also contend with axial motion primarily from head movements that shift the target tissue out of the coherence detection range. Traditional SDOCT instruments suffer from inherent deficiencies that exacerbate the effect of depth motion, including limited range, depth-dependent signal attenuation, and complex conjugate overlap. We present initial results on extension of our transverse retinal tracking system to three-dimensions especially for SDOCT imagers. The design and principle of operation of two depth tracking techniques, adaptive ranging (AR) and Doppler velocity (DV) tracking, are presented. We have integrated the threedimensional tracking hardware into a hybrid line scanning laser ophthalmoscope (LSLO)/SDOCT imaging system. Imaging and tracking performance was characterized by tests involving a limited number of human subjects. The hybrid imager could switch between wide-field en-face confocal LSLO images, high-resolution cross-sectional OCT images, and an interleaved mode of sequential LSLO and OCT images. With 3-D tracking, the RMS error for axial motion decreased to <50 µm and for lateral motion decreased to <10 µm. The development of real-time tracking and SDOCT image processing hardware is also discussed. Future implementation of 3-D tracking should increase the yield of usable images and decrease the patient measurement time for clinical SDOCT systems.

  12. Three-dimensional Bayesian optical diffusion tomography with experimental data.

    PubMed

    Milstein, Adam B; Oh, Seungseok; Reynolds, Jeffery S; Webb, Kevin J; Bouman, Charles A; Millane, Rick P

    2002-01-15

    Reconstructions of a three-dimensional absorber embedded in a scattering medium by use of frequency domain measurements of the transmitted light in a single source-detector plane are presented. The reconstruction algorithm uses Bayesian regularization and iterative coordinate descent optimization, and it incorporates estimation of the detector noise level, the source-detector coupling coefficient, and the background diffusion coefficient in addition to the absorption image. The use of multiple modulation frequencies is also investigated. The results demonstrate the utility of this algorithm, the importance of a three-dimensional model, and that out-of-plane scattering permits recovery of three-dimensional features from measurements in a single plane. PMID:18007723

  13. Synthesis and optical properties of three-dimensional porous core-shell nanoarchitectures.

    PubMed

    Qian, Li-Hua; Ding, Yi; Fujita, Takeshi; Chen, Ming-Wei

    2008-05-01

    Three-dimensional porous core-shell nanostructures consisting of gold skeletons and silver shells were fabricated by controllable electroless plating. Optical properties of the 3D nanocomposite with a heterogeneous interface exhibit a significant shell-thickness dependence. The porous core-shell structure with an optimized shell thickness of approximately 3-5 nm exhibits a considerable improvement in surface-enhanced Raman scattering. This study has important implications in the functionalization of nanoporous metals by surface modification. PMID:18355096

  14. Controlling Random Lasing with Three-Dimensional Plasmonic Nanorod Metamaterials.

    PubMed

    Wang, Zhuoxian; Meng, Xiangeng; Choi, Seung Ho; Knitter, Sebastian; Kim, Young L; Cao, Hui; Shalaev, Vladimir M; Boltasseva, Alexandra

    2016-04-13

    Plasmonics has brought revolutionary advances to laser science by enabling deeply subwavelength nanolasers through surface plasmon amplification. However, the impact of plasmonics on other promising laser systems has so far remained elusive. Here, we present a class of random lasers enabled by three-dimensional plasmonic nanorod metamaterials. While dense metallic nanostructures are usually detrimental to laser performance due to absorption losses, here the lasing threshold keeps decreasing as the volume fraction of metal is increased up to ∼0.07. This is ∼460 times higher than the optimal volume fraction reported thus far. The laser supports spatially confined lasing modes and allows for efficient modulation of spectral profiles by simply tuning the polarization of the pump light. Full-field speckle-free imaging at micron-scales has been achieved by using plasmonic random lasers as the illumination sources. Our findings show that plasmonic metamaterials hold potential to enable intriguing coherent optical sources. PMID:27023052

  15. Three dimensional laser microfabrication in diamond using a dual adaptive optics system.

    PubMed

    Simmonds, Richard D; Salter, Patrick S; Jesacher, Alexander; Booth, Martin J

    2011-11-21

    Femtosecond laser fabrication of controlled three dimensional structures deep in the bulk of diamond is facilitated by a dual adaptive optics system. A deformable mirror is used in parallel with a liquid crystal spatial light modulator to compensate the extreme aberrations caused by the refractive index mismatch between the diamond and the objective immersion medium. It is shown that aberration compensation is essential for the generation of controlled micron-scale features at depths greater than 200 μm, and the dual adaptive optics approach demonstrates increased fabrication efficiency relative to experiments using a single adaptive element. PMID:22109438

  16. Three-dimensional solidification and melting using magnetic field control

    NASA Technical Reports Server (NTRS)

    Dulikravich, George S.; Ahuja, Vineet

    1993-01-01

    A new two-fluid mathematical model for fully three dimensional steady solidification under the influence of an arbitrary acceleration vector and with or without an arbitrary externally applied steady magnetic field have been formulated and integrated numerically. The model includes Joule heating and allows for separate temperature dependent physical properties within the melt and the solid. Latent heat of phase change during melting/solidification was incorporated using an enthalpy method. Mushy region was automatically captured by varying viscosity orders of magnitude between liquidus and solidus temperature. Computational results were obtained for silicon melt solidification in a parallelepiped container cooled from above and from a side. The results confirm that the magnetic field has a profound influence on the solidifying melt flow field thus changing convective heat transfer through the boundaries and the amount and shape of the solid accrued. This suggests that development of a quick-response algorithm for active control of three dimensional solidification is feasible since it would require low strength magnetic fields.

  17. Three-dimensional visuo-motor control of saccades.

    PubMed

    Hess, Bernhard J M

    2013-01-01

    Although the motion of the line of sight is a straightforward consequence of a particular rotation of the eye, it is much trickier to predict the rotation underlying a particular motion of the line of sight in accordance with Listing's law. Helmholtz's notion of the direction-circle together with the notion of primary and secondary reference directions in visual space provide an elegant solution to this reverse engineering problem, which the brain is faced with whenever generating a saccade. To test whether these notions indeed apply for saccades, we analyzed three-dimensional eye movements recorded in four rhesus monkeys. We found that on average saccade trajectories closely matched with the associated direction-circles. Torsional, vertical, and horizontal eye position of saccades scattered around the position predicted by the associated direction-circles with standard deviations of 0.5°, 0.3°, and 0.4°, respectively. Comparison of saccade trajectories with the likewise predicted fixed-axis rotations yielded mean coefficients of determinations (±SD) of 0.72 (±0.26) for torsion, 0.97 (±0.10) for vertical, and 0.96 (±0.11) for horizontal eye position. Reverse engineering of three-dimensional saccadic rotations based on visual information suggests that motor control of saccades, compatible with Listing's law, not only uses information on the fixation directions at saccade onset and offset but also relies on the computation of secondary reference positions that vary from saccade to saccade. PMID:23054597

  18. Laser electro-optic system for rapid three-dimensional /3-D/ topographic mapping of surfaces

    NASA Technical Reports Server (NTRS)

    Altschuler, M. D.; Altschuler, B. R.; Taboada, J.

    1981-01-01

    It is pointed out that the generic utility of a robot in a factory/assembly environment could be substantially enhanced by providing a vision capability to the robot. A standard videocamera for robot vision provides a two-dimensional image which contains insufficient information for a detailed three-dimensional reconstruction of an object. Approaches which supply the additional information needed for the three-dimensional mapping of objects with complex surface shapes are briefly considered and a description is presented of a laser-based system which can provide three-dimensional vision to a robot. The system consists of a laser beam array generator, an optical image recorder, and software for controlling the required operations. The projection of a laser beam array onto a surface produces a dot pattern image which is viewed from one or more suitable perspectives. Attention is given to the mathematical method employed, the space coding technique, the approaches used for obtaining the transformation parameters, the optics for laser beam array generation, the hardware for beam array coding, and aspects of image acquisition.

  19. Measuring three-dimensional interaction potentials using optical interference.

    PubMed

    Mojarad, Nassir; Sandoghdar, Vahid; Krishnan, Madhavi

    2013-04-22

    We describe the application of three-dimensional (3D) scattering interferometric (iSCAT) imaging to the measurement of spatial interaction potentials for nano-objects in solution. We study electrostatically trapped gold particles in a nanofluidic device and present details on axial particle localization in the presence of a strongly reflecting interface. Our results demonstrate high-speed (~kHz) particle tracking with subnanometer localization precision in the axial and average 2.5 nm in the lateral dimension. A comparison of the measured levitation heights of trapped particles with the calculated values for traps of various geometries reveals good agreement. Our work demonstrates that iSCAT imaging delivers label-free, high-speed and accurate 3D tracking of nano-objects conducive to probing weak and long-range interaction potentials in solution. PMID:23609648

  20. Three-dimensional optical tomography of the premature infant brain

    NASA Astrophysics Data System (ADS)

    Hebden, Jeremy C.; Gibson, Adam; Yusof, Rozarina Md; Everdell, Nick; Hillman, Elizabeth M. C.; Delpy, David T.; Arridge, Simon R.; Austin, Topun; Meek, Judith H.; Wyatt, John S.

    2002-12-01

    For the first time, three-dimensional images of the newborn infant brain have been generated using measurements of transmitted light. A 32-channel time-resolved imaging system was employed, and data were acquired using custom-made helmets which couple source fibres and detector bundles to the infant head. Images have been reconstructed using measurements of mean flight time relative to those acquired on a homogeneous reference phantom, and using a head-shaped 3D finite-element-based forward model with an external boundary constrained to match the measured positions of the sources and detectors. Results are presented for a premature infant with a cerebral haemorrhage predominantly located within the left ventricle. Images representing the distribution of absorption at 780 nm and 815 nm reveal an asymmetry consistent with the haemorrhage, and corresponding maps of blood volume and fractional oxygen saturation are generally within expected physiological values.

  1. Three-dimensional surface phase imaging based on integrated thermo-optic swept laser

    NASA Astrophysics Data System (ADS)

    Kim, Hyo Jin; Cho, Jaedu; Noh, Young-Ouk; Oh, Min-Cheol; Chen, Zhongping; Kim, Chang-Seok

    2014-03-01

    We developed an optical frequency domain imaging (OFDI) system based on an integrated thermo-optic swept laser to achieve three-dimensional surface imaging. The wavelength was swept by applying a heating signal to a thermo-optic polymeric waveguide. The sub-micrometer surface profile was converted from the three-dimensional phase information of the OFDI system on various samples used as resolution targets with a step height of 120 nm.

  2. Quantifying three-dimensional optic axis using polarization-sensitive optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Liu, Chao J.; Black, Adam J.; Wang, Hui; Akkin, Taner

    2016-07-01

    The optic axis of birefringent samples indicates the direction of optical anisotropy, which should be described in three-dimensional (3-D) space. We present a method to quantify the complete 3-D optic axis orientation calculated from in-plane optic axis measurements from a polarization-sensitive optical coherence tomography system. The in-plane axis orientations with different illumination angles allow the calculation of the necessary polar angle. The method then provides the information to produce the actual birefringence. The method and results from a biological sample are presented.

  3. Three-Dimensional Displacement Measurement Using Diffractive Optic Interferometry

    NASA Technical Reports Server (NTRS)

    Gilbert, John A.; Cole, Helen J.; Shepherd, Robert L.; Ashley Paul R.

    1999-01-01

    This paper introduces a powerful new optical method which utilizes diffractive optic interferometry (DOI) to measure both in-plane and out-of-plane displacement with variable sensitivity using the same optical system. Sensitivity is varied by utilizing various combinations of the different wavefronts produced by a conjugate pair of binary Optical elements; a transmission grating is used to produce several illumination beams while a reflective grating replicated on the surface of a specimen, provides the reference for the undeformed state. A derivation of the equations which govern the method is included along with a discussion Of the experimental tests conducted to verify the theory. Overall, the results are excellent, with experimental data agreeing to within a few percent of the theoretical predictions.

  4. Wide-field three-dimensional optical imaging using temporal focusing for holographically trapped microparticles.

    PubMed

    Spesyvtsev, Roman; Rendall, Helen A; Dholakia, Kishan

    2015-11-01

    A contemporary challenge across the natural sciences is the simultaneous optical imaging or stimulation of small numbers of cells or colloidal particles organized into arbitrary geometries. We demonstrate the use of temporal focusing with holographic optical tweezers in order to achieve depth-resolved two-photon imaging of trapped objects arranged in arbitrary three-dimensional (3D) geometries using a single objective. Trapping allows for the independent position control of multiple objects by holographic beam shaping. Temporal focusing of ultrashort pulses provides the wide-field two-photon depth-selective activation of fluorescent samples. We demonstrate the wide-field depth-resolved illumination of both trapped fluorescent beads and trapped HL60 cells in suspension with full 3D positioning control. These approaches are compatible with implementation through scattering media and can be beneficial for emergent studies in colloidal science and particularly optogenetics, offering targeted photoactivation over a wide area with micrometer-precision depth control. PMID:26512465

  5. Rewritable three-dimensional holographic data storage via optical forces

    NASA Astrophysics Data System (ADS)

    Yetisen, Ali K.; Montelongo, Yunuen; Butt, Haider

    2016-08-01

    The development of nanostructures that can be reversibly arranged and assembled into 3D patterns may enable optical tunability. However, current dynamic recording materials such as photorefractive polymers cannot be used to store information permanently while also retaining configurability. Here, we describe the synthesis and optimization of a silver nanoparticle doped poly(2-hydroxyethyl methacrylate-co-methacrylic acid) recording medium for reversibly recording 3D holograms. We theoretically and experimentally demonstrate organizing nanoparticles into 3D assemblies in the recording medium using optical forces produced by the gradients of standing waves. The nanoparticles in the recording medium are organized by multiple nanosecond laser pulses to produce reconfigurable slanted multilayer structures. We demonstrate the capability of producing rewritable optical elements such as multilayer Bragg diffraction gratings, 1D photonic crystals, and 3D multiplexed optical gratings. We also show that 3D virtual holograms can be reversibly recorded. This recording strategy may have applications in reconfigurable optical elements, data storage devices, and dynamic holographic displays.

  6. Plastinated tissue samples as three-dimensional models for optical instrument characterization

    PubMed Central

    Marks, Daniel L.; Chaney, Eric J.; Boppart, Stephen A.

    2010-01-01

    Histology of biological specimens is largely limited to investigating two-dimensional structure because of the sectioning required to produce optically thin samples for conventional microscopy. With the advent of three-dimensional optical imaging technologies such as optical coherence tomography (OCT), diffuse optical tomography (DOT), and multiphoton microscopy (MPM), methods of tissue preparation that minimally disrupt three-dimensional structure are needed. We propose plastination as a means of transforming tissues into three-dimensional models suitable for optical instrument characterization. Tissues are plastinated by infusing them with transparent polymers, after which they can be safely handled, unlike fresh or fixed tissues. Such models are useful for investigating three-dimensional structure, testing and comparing the performance of optical instruments, and potentially investigating tissue properties not normally observed after the three-dimensional scattering properties of a biological samples are lost. We detail our plastination procedures and show examples of imaging several plastinated tissues from a pre-clinical rat model using optical coherence tomography. PMID:18825267

  7. Plastinated tissue samples as three-dimensional models for optical instrument characterization.

    PubMed

    Marks, Daniel L; Chaney, Eric J; Boppart, Stephen A

    2008-09-29

    Histology of biological specimens is largely limited to investigating two-dimensional structure because of the sectioning required to produce optically thin samples for conventional microscopy. With the advent of three-dimensional optical imaging technologies such as optical coherence tomography (OCT), diffuse optical tomography (DOT), and multiphoton microscopy (MPM), methods of tissue preparation that minimally disrupt three-dimensional structure are needed. We propose plastination as a means of transforming tissues into three-dimensional models suitable for optical instrument characterization. Tissues are plastinated by infusing them with transparent polymers, after which they can be safely handled, unlike fresh or fixed tissues. Such models are useful for investigating three-dimensional structure, testing and comparing the performance of optical instruments, and potentially investigating tissue properties not normally observed after the three-dimensional scattering properties of a biological samples are lost. We detail our plastination procedures and show examples of imaging several plastinated tissues from a pre-clinical rat model using optical coherence tomography. PMID:18825267

  8. Non-contact optical three dimensional liner metrology.

    SciTech Connect

    Sebring, R. J.; Anderson, W. E.; Bartos, J. J.; Garcia, F.; Randolph, B.; Salazar, M. A.; Edwards, J. M.

    2001-01-01

    We optically captured the 'as-built' liner geometry of NTLX (near term liner experiments) for Shiva Star using ultra-precision ranging lasers. We subsequently verified the resulting digitized geometry against the 3D CAD model of the part. The results confirmed that the Liner contours are within designed tolerances but revealed subtle fabrication artifacts that would typically go undetected. These features included centimeters long waviness and saddle and bulge regions of 1 micron or less in magnitude. The laser technology typically provided 10 micron spatial resolution with {+-}12 nanometer ranging precision. Atlas liners in the future may have to be diamond turned and will have the centimeter wavelength and 100 angstrom amplitude requirements. The advantages of using laser technology are (1) it avoids surface damage that may occur with conventional contact probes and (2) dramatically improves spatial resolution over CMM, capacitance and inductance type probes. Our work is the result of a perceived future need to develop precision, non-contact, liner inspection techniques to verify geometry, characterize machining artifacts and map wall thickness on delicate diamond turned surfaces. Capturing 'as-built' geometry in a non-contact way coupled with part-to-CAD verification software tools creates a new metrology competency for MST-7.

  9. Three-dimensional holographic optical tweezers implemented on spatial light modulator

    NASA Astrophysics Data System (ADS)

    Ferrari, Enrico; Cojoc, Dan; Emiliani, Valentina; Garbin, Valeria; Coppey-Moisan, Maïté; Di Fabrizio, Enzo

    2005-08-01

    We have developed a holographic optical tweezers system based on diffractive optical elements (DOES) implemented on a liquid crystal spatial light modulator (LC-SLM) able to generate fine positioned traps on the sample. Our own algorithms and code allows to calculate phase DOES that can transform a single laser beam into an array of independent traps, each with individually specified characteristics, arranged in arbitrary three-dimensional (3D) geometrical configurations. Different DOEs can be dynamically projected to the SLM in order to achieve a rearrangement of the configuration of the trapping spots. Silica or latex micro-beads are trapped in different configurations of spots to demonstrate the fine control capability on each trap. Our setup is built on a standard video microscope coupled with a laser source, a spatial light modulator and a three axis nano-positioning system. It allows to obtain 3D multi-trapping and a fine calibration for the positioning of the traps.

  10. Three-dimensional positioning and control of colloidal objects utilizing engineered liquid crystalline defect networks

    PubMed Central

    Yoshida, H.; Asakura, K.; Fukuda, J.; Ozaki, M.

    2015-01-01

    Topological defects in liquid crystals not only affect the optical and rheological properties of the host, but can also act as scaffolds in which to trap nano or micro-sized colloidal objects. The creation of complex defect shapes, however, often involves confining the liquid crystals in curved geometries or adds complex-shaped colloidal objects, which are unsuitable for device applications. Using topologically patterned substrates, here we demonstrate the controlled generation of three-dimensional defect lines with non-trivial shapes and even chirality, in a flat slab of nematic liquid crystal. By using the defect lines as templates and the electric response of the liquid crystals, colloidal superstructures are constructed, which can be reversibly reconfigured at a voltage as low as 1.3 V. Three-dimensional engineering of the defect shapes in liquid crystals is potentially useful in the fabrication of self-healing composites and in stabilizing artificial frustrated phases. PMID:25994837

  11. Complex three-dimensional polymer-metal core-shell structures towards emission control.

    PubMed

    Ren, Lin; Wang, De-Gong; Niu, Li-Gang; Xu, Bin-Bin; Song, Jun-Feng; Chen, Qi-Dai; Sun, Hong-Bo

    2013-06-28

    We report the fabrication of three-dimensional periodic metal nickel nanostructures achieved by the combination of femtosecond laser-induced two-photon polymerization and electroless plating technology. We can control the deposition speed of 10 nm per second by adjusting the reaction time. The thermal stability is good under 500 °C for the three-dimensional graphite-lattice polymer structure with 200 nm nickel film. Optical reflectivity and thermal emission measurements under 550 °C showed that the fabricated metallic structure was thermally excited and emitted light at λ = 4.50, 4.95 μm. The emission peak wavelengths agree with the absorption peaks. These data demonstrate that creating metallic photonic crystals by incorporation of metals to laser-fabricated templates is a simple and cost-efficient method. The emitters can work at such low temperatures, which is more important for realistic operation in applications. PMID:23666225

  12. Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers

    PubMed Central

    Brzobohatý, Oto; Šiler, Martin; Trojek, Jan; Chvátal, Lukáš; Karásek, Vítězslav; Paták, Aleš; Pokorná, Zuzana; Mika, Filip; Zemánek, Pavel

    2015-01-01

    It was previously believed that larger metal nanoparticles behave as tiny mirrors that are pushed by the light beam radiative force along the direction of beam propagation, without a chance to be confined. However, several groups have recently reported successful optical trapping of gold and silver particles as large as 250 nm. We offer a possible explanation based on the fact that metal nanoparticles naturally occur in various non-spherical shapes and their optical properties differ significantly due to changes in localized plasmon excitation. We demonstrate experimentally and support theoretically three-dimensional confinement of large gold nanoparticles in an optical trap based on very low numerical aperture optics. We showed theoretically that the unique properties of gold nanoprisms allow an increase of trapping force by an order of magnitude at certain aspect ratios. These results pave the way to spatial manipulation of plasmonic nanoparticles using an optical fibre, with interesting applications in biology and medicine. PMID:25630432

  13. Local nondestructive data reading in three-dimensional memory systems based on the optical Kerr effect

    SciTech Connect

    Zheltikov, Aleksei M; Koroteev, Nikolai I; Naumov, A N; Fedotov, Andrei B; Magnitskiy, Sergey A; Sidorov-Biryukov, D A

    1998-11-30

    An investigation was made of the characteristics of the optical Kerr effect in a spiropyran solution. It was found that this effect makes it possible to distinguish the coloured and uncoloured forms of spiropyran and that it represents a promising method for nondestructive data reading in three-dimensional optical memory systems based on photochromic materials. (letters to the editor)

  14. Structured light optical microscopy for three-dimensional reconstruction of technical surfaces

    NASA Astrophysics Data System (ADS)

    Kettel, Johannes; Reinecke, Holger; Müller, Claas

    2016-04-01

    In microsystems technology quality control of micro structured surfaces with different surface properties is playing an ever more important role. The process of quality control incorporates three-dimensional (3D) reconstruction of specularand diffusive reflecting technical surfaces. Due to the demand on high measurement accuracy and data acquisition rates, structured light optical microscopy has become a valuable solution to solve this problem providing high vertical and lateral resolution. However, 3D reconstruction of specular reflecting technical surfaces still remains a challenge to optical measurement principles. In this paper we present a measurement principle based on structured light optical microscopy which enables 3D reconstruction of specular- and diffusive reflecting technical surfaces. It is realized using two light paths of a stereo microscope equipped with different magnification levels. The right optical path of the stereo microscope is used to project structured light onto the object surface. The left optical path is used to capture the structured illuminated object surface with a camera. Structured light patterns are generated by a Digital Light Processing (DLP) device in combination with a high power Light Emitting Diode (LED). Structured light patterns are realized as a matrix of discrete light spots to illuminate defined areas on the object surface. The introduced measurement principle is based on multiple and parallel processed point measurements. Analysis of the measured Point Spread Function (PSF) by pattern recognition and model fitting algorithms enables the precise calculation of 3D coordinates. Using exemplary technical surfaces we demonstrate the successful application of our measurement principle.

  15. Transmitting part of optical interconnect module with three-dimensional optical path

    NASA Astrophysics Data System (ADS)

    Chang, Chia-Chi; Shen, Po-Kuan; Chen, Chin-Ta; Hsiao, Hsu-Liang; Chang, Yen-Chung; Lee, Yun-Chih; Wu, Mount-Learn

    2012-01-01

    Transmitting part of optical interconnection module with three-dimensional optical path is demonstrated. In this module, electronic-device and photonic-device are separated on the front and rear sides of SOI substrate. The key component of this module are 45° micro reflector and trapezoidal waveguide which are fabricated by single-step wet etching on front side of SOI substrate. High-frequency transmission lines for 4-channel × 2.5-GHz and VCSELs are constructed on rear side of SOI substrate. In this module, the measurement result of optical coupling efficiency is -8.09 dB, and the 1-dB alignment tolerances are 25 μm and 26 μm on the horizontal and vertical direction, respectively. Eye diagrams are measured at data rate of 1-Gbps and 2.5-Gbps with the 215-1 PRBS pattern and the clearly open eyes are demonstrated.

  16. Optical cell separation from three-dimensional environment in photodegradable hydrogels for pure culture techniques.

    PubMed

    Tamura, Masato; Yanagawa, Fumiki; Sugiura, Shinji; Takagi, Toshiyuki; Sumaru, Kimio; Matsui, Hirofumi; Kanamori, Toshiyuki

    2014-01-01

    Cell sorting is an essential and efficient experimental tool for the isolation and characterization of target cells. A three-dimensional environment is crucial in determining cell behavior and cell fate in biological analysis. Herein, we have applied photodegradable hydrogels to optical cell separation from a 3D environment using a computer-controlled light irradiation system. The hydrogel is composed of photocleavable tetra-arm polyethylene glycol and gelatin, which optimized cytocompatibility to adjust a composition of crosslinker and gelatin. Local light irradiation could degrade the hydrogel corresponding to the micropattern image designed on a laptop; minimum resolution of photodegradation was estimated at 20 µm. Light irradiation separated an encapsulated fluorescent microbead without any contamination of neighbor beads, even at multiple targets. Upon selective separation of target cells in the hydrogels, the separated cells have grown on another dish, resulting in pure culture. Cell encapsulation, light irradiation and degradation products exhibited negligible cytotoxicity in overall process. PMID:24810563

  17. Evaluation of optical flow algorithms for tracking endocardial surfaces on three-dimensional ultrasound data

    NASA Astrophysics Data System (ADS)

    Duan, Qi; Angelini, Elsa D.; Herz, Susan L.; Ingrassia, Christopher M.; Gerard, Olivier; Costa, Kevin D.; Holmes, Jeffrey W.; Laine, Andrew F.

    2005-04-01

    With relatively high frame rates and the ability to acquire volume data sets with a stationary transducer, 3D ultrasound systems, based on matrix phased array transducers, provide valuable three-dimensional information, from which quantitative measures of cardiac function can be extracted. Such analyses require segmentation and visual tracking of the left ventricular endocardial border. Due to the large size of the volumetric data sets, manual tracing of the endocardial border is tedious and impractical for clinical applications. Therefore the development of automatic methods for tracking three-dimensional endocardial motion is essential. In this study, we evaluate a four-dimensional optical flow motion tracking algorithm to determine its capability to follow the endocardial border in three dimensional ultrasound data through time. The four-dimensional optical flow method was implemented using three-dimensional correlation. We tested the algorithm on an experimental open-chest dog data set and a clinical data set acquired with a Philips' iE33 three-dimensional ultrasound machine. Initialized with left ventricular endocardial data points obtained from manual tracing at end-diastole, the algorithm automatically tracked these points frame by frame through the whole cardiac cycle. A finite element surface was fitted through the data points obtained by both optical flow tracking and manual tracing by an experienced observer for quantitative comparison of the results. Parameterization of the finite element surfaces was performed and maps displaying relative differences between the manual and semi-automatic methods were compared. The results showed good consistency between manual tracing and optical flow estimation on 73% of the entire surface with fewer than 10% difference. In addition, the optical flow motion tracking algorithm greatly reduced processing time (about 94% reduction compared to human involvement per cardiac cycle) for analyzing cardiac function in three-dimensional

  18. Estimation of trapping position in three-dimensional off-axis trapping with optical vortices

    NASA Astrophysics Data System (ADS)

    Ando, Taro; Otsu, Tomoko; Takiguchi, Yu; Ohtake, Yoshiyuki; Toyoda, Haruyoshi; Itoh, Hiroyasu

    2014-08-01

    Dynamics of micrometer-sized dielectric objects can be controlled by optical tweezers with scanning light, however, the trapped objects fail to track the scan when drag exceeds the trapping by too quick movement. On the other hand, optical vortices (OVs), which have a property of carrying angular momenta, can directly control torque on objects rather than their position. Laguerre-Gaussian (LG) beams are the most familiar examples of OV and have been studied extensively so far. Revolution of the objects trapped by the LG beams provides typical models of nonequilibrium statistical system, but stable mid-water trapping by the LG beams becomes essential to evaluate physical properties of the system without extrinsic hydrodynamic effects,. Nevertheless, off-axis revolutions of small objects trapped in mid-water by the LG beams have not yet been established with secure evidences. Here we report stable off-axis trapping of dielectric spheres in mid-water using high-quality LG beams generated by a holographic complex-amplitude modulation method. Direct evidence of the three-dimensional off-axis LG trapping was established via estimating the trapping position by measuring the change of revolution radii upon pressing the spheres onto glass walls. Resultantly, the axial trapping position was determined as about half the wavelength behind the beam waist position. This result provides a direct scientific evidence for possibility of off-axis three-dimensional trapping with a single LG beam, moreover, suggests applications as powerful tools for studying energy-conversion mechanisms and nonequilibrium nature in biological molecules under torque.

  19. New advances in three-dimensional controlled-sourceelectromagnetic inversion

    SciTech Connect

    Commer, Michael; Newman, Gregory A.

    2007-05-19

    New techniques for improving both the computational andimaging performance of the three dimensional (3D) electromagnetic inverseproblem are presented. A non-linear conjugate gradient algorithm is theframework of the inversion scheme. Full wave equation modelling forcontrolled sources is utilized for data simulation along with anefficient gradient computation approach for the model update. Improvingthe modelling efficiency of the 3D finite difference method involves theseparation of the potentially large modelling mesh, defining the set ofmodel parameters, from the computational finite difference meshes usedfor field simulation. Grid spacings and thus overall grid sizes can bereduced and optimized according to source frequencies and source-receiveroffsets of a given input data set. Further computational efficiency isobtained by combining different levels of parallelization. While theparallel scheme allows for an arbitrarily large number of parallel tasks,the relative amount of message passing is kept constant. Imageenhancement is achieved by model parameter transformation functions,which enforce bounded conductivity parameters and thus prevent parameterovershoots. Further, a remedy for treating distorted data within theinversion process is presented. Data distortions simulated here includepositioning errors and a highly conductive overburden, hiding the desiredtarget signal. The methods are demonstrated using both synthetic andfield data.

  20. Three-dimensional imaging of optically opaque materials using nonionizing terahertz radiation.

    PubMed

    Wallace, Vincent P; Macpherson, Emma; Zeitler, J Axel; Reid, Caroline

    2008-12-01

    Terahertz electromagnetic radiation has already been shown to have a wide number of uses. We consider specific applications of terahertz time-domain imaging that are inherently three-dimensional. This paper highlights the ability of terahertz radiation to reveal subsurface information as we exploit the fact that the radiation can penetrate optically opaque materials such as clothing, cardboard, plastics, and to some extent biological tissue. Using interactive science publishing tools, we concentrate on full three-dimensional terahertz data from three specific areas of application, namely, security, pharmaceutical, and biomedical. PMID:19037404

  1. Finite-element model for three-dimensional optical scattering problems.

    PubMed

    Wei, Xiuhong; Wachters, Arthur J; Urbach, H Paul

    2007-03-01

    We present a three-dimensional model based on the finite-element method for solving the time-harmonic Maxwell equation in optics. It applies to isotropic or anisotropic dielectrics and metals and to many configurations such as an isolated scatterer in a multilayer, bi-gratings, and crystals. We discuss the application of the model to near-field optical recording. PMID:17301875

  2. Optical chracterization and lasing in three-dimensional opal-structures

    NASA Astrophysics Data System (ADS)

    Nishijima, Yoshiaki; Juodkazis, Saulius

    2015-06-01

    The lasing properties of dye-permeated opal pyramidal structures are compared with the lasing properties of opal films. The opal-structures studied were made by sedimentation of micro-spheres and by sol-gel inversion of the direct-opals. Forced-sedimentation by centrifugation inside wet-etched pyramidal pits on silicon surfaces was used to improve the structural quality of the direct-opal structures. Single crystalline pyramids with the base length of ˜ 100 µm were formed by centrifuged sedimentation. The lasing of dyes in the well-ordered crystalline and poly-crystalline structures showed a distinct multi-modal spectrum. Gain via a distributed feedback was responsible for the lasing since the photonic band gap was negligible in a low refractive index contrast medium; the indices of silica and ethylene glycol are 1.46 and 1.42, respectively. A disordered lasing spectrum was observed from opal films with structural defects and multi-domain regions. The three dimensional structural quality of the structures was assessed by in situ optical diffraction and confocal fluorescence. A correlation between the lasing spectrum and the three-dimensional structural quality was established. Lasing threshold of a sulforhodamine dye in a silica opal was controlled via Förster mechanism by addition of a donor rhodamine 6G dye. The lasing spectrum had a well-ordered modal structure which was spectrally stable at different excitation powers. The sharp lasing threshold characterized by a spontaneous emission coupling ratio β ' 10-2 was obtained.

  3. Customized three-dimensional printed optical phantoms with user defined absorption and scattering

    NASA Astrophysics Data System (ADS)

    Pannem, Sanjana; Sweer, Jordan; Diep, Phuong; Lo, Justine; Snyder, Michael; Stueber, Gabriella; Zhao, Yanyu; Tabassum, Syeda; Istfan, Raeef; Wu, Junjie; Erramilli, Shyamsunder; Roblyer, Darren M.

    2016-03-01

    The use of reliable tissue-simulating phantoms spans multiple applications in spectroscopic imaging including device calibration and testing of new imaging procedures. Three-dimensional (3D) printing allows for the possibility of optical phantoms with arbitrary geometries and spatially varying optical properties. We recently demonstrated the ability to 3D print tissue-simulating phantoms with customized absorption (μa) and reduced scattering (μs`) by incorporating nigrosin, an absorbing dye, and titanium dioxide (TiO2), a scattering agent, to acrylonitrile butadiene styrene (ABS) during filament extrusion. A physiologically relevant range of μa and μs` was demonstrated with high repeatability. We expand our prior work here by evaluating the effect of two important 3D-printing parameters, percent infill and layer height, on both μa and μs`. 2 cm3 cubes were printed with percent infill ranging from 10% to 100% and layer height ranging from 0.15 to 0.40 mm. The range in μa and μs` was 27.3% and 19.5% respectively for different percent infills at 471 nm. For varying layer height, the range in μa and μs` was 27.8% and 15.4% respectively at 471 nm. These results indicate that percent infill and layer height substantially alter optical properties and should be carefully controlled during phantom fabrication. Through the use of inexpensive hobby-level printers, the fabrication of optical phantoms may advance the complexity and availability of fully customizable phantoms over multiple spatial scales. This technique exhibits a wider range of adaptability than other common methods of fabricating optical phantoms and may lead to improved instrument characterization and calibration.

  4. Three-dimensional Retinal Imaging with High-Speed Ultrahigh-Resolution Optical Coherence Tomography

    PubMed Central

    Wojtkowski, Maciej; Srinivasan, Vivek; Fujimoto, James G.; Ko, Tony; Schuman, Joel S.; Kowalczyk, Andrzej; Duker, Jay S.

    2007-01-01

    Purpose To demonstrate high-speed, ultrahigh-resolution, 3-dimensional optical coherence tomography (3D OCT) and new protocols for retinal imaging. Methods Ultrahigh-resolution OCT using broadband light sources achieves axial image resolutions of ~2 μm compared with standard 10-μm-resolution OCT current commercial instruments. High-speed OCT using spectral/Fourier domain detection enables dramatic increases in imaging speeds. Three-dimensional OCT retinal imaging is performed in normal human subjects using high-speed ultrahigh-resolution OCT. Three-dimensional OCT data of the macula and optic disc are acquired using a dense raster scan pattern. New processing and display methods for generating virtual OCT fundus images; cross-sectional OCT images with arbitrary orientations; quantitative maps of retinal, nerve fiber layer, and other intraretinal layer thicknesses; and optic nerve head topographic parameters are demonstrated. Results Three-dimensional OCT imaging enables new imaging protocols that improve visualization and mapping of retinal microstructure. An OCT fundus image can be generated directly from the 3D OCT data, which enables precise and repeatable registration of cross-sectional OCT images and thickness maps with fundus features. Optical coherence tomography images with arbitrary orientations, such as circumpapillary scans, can be generated from 3D OCT data. Mapping of total retinal thickness and thicknesses of the nerve fiber layer, photoreceptor layer, and other intraretinal layers is demonstrated. Measurement of optic nerve head topography and disc parameters is also possible. Three-dimensional OCT enables measurements that are similar to those of standard instruments, including the StratusOCT, GDx, HRT, and RTA. Conclusion Three-dimensional OCT imaging can be performed using high-speed ultrahigh-resolution OCT. Three-dimensional OCT provides comprehensive visualization and mapping of retinal microstructures. The high data acquisition speeds enable

  5. Parameter estimation of atherosclerotic tissue optical properties from three-dimensional intravascular optical coherence tomography

    PubMed Central

    Gargesha, Madhusudhana; Shalev, Ronny; Prabhu, David; Tanaka, Kentaro; Rollins, Andrew M.; Costa, Marco; Bezerra, Hiram G.; Wilson, David L.

    2015-01-01

    Abstract. We developed robust, three-dimensional methods, as opposed to traditional A-line analysis, for estimating the optical properties of calcified, fibrotic, and lipid atherosclerotic plaques from in vivo coronary artery intravascular optical coherence tomography clinical pullbacks. We estimated attenuation μt and backscattered intensity I0 from small volumes of interest annotated by experts in 35 pullbacks. Some results were as follows: noise reduction filtering was desirable, parallel line (PL) methods outperformed individual line methods, root mean square error was the best goodness-of-fit, and α-trimmed PL (α-T-PL) was the best overall method. Estimates of μt were calcified (3.84±0.95  mm−1), fibrotic (2.15±1.08  mm−1), and lipid (9.99±2.37  mm−1), similar to those in the literature, and tissue classification from optical properties alone was promising. PMID:26158087

  6. Three-dimensional control of the helical axis of a chiral nematic liquid crystal by light

    NASA Astrophysics Data System (ADS)

    Zheng, Zhi-Gang; Li, Yannian; Bisoyi, Hari Krishna; Wang, Ling; Bunning, Timothy J.; Li, Quan

    2016-03-01

    Chiral nematic liquid crystals—otherwise referred to as cholesteric liquid crystals (CLCs)—are self-organized helical superstructures that find practical application in, for example, thermography, reflective displays, tuneable colour filters and mirrorless lasing. Dynamic, remote and three-dimensional control over the helical axis of CLCs is desirable, but challenging. For example, the orientation of the helical axis relative to the substrate can be changed from perpendicular to parallel by applying an alternating-current electric field, by changing the anchoring conditions of the substrate, or by altering the topography of the substrate’s surface; separately, in-plane rotation of the helical axis parallel to the substrate can be driven by a direct-current field. Here we report three-dimensional manipulation of the helical axis of a CLC, together with inversion of its handedness, achieved solely with a light stimulus. We use this technique to carry out light-activated, wide-area, reversible two-dimensional beam steering—previously accomplished using complex integrated systems and optical phased arrays. During the three-dimensional manipulation by light, the helical axis undergoes, in sequence, a reversible transition from perpendicular to parallel, followed by in-plane rotation on the substrate surface. Such reversible manipulation depends on experimental parameters such as cell thickness, surface anchoring condition, and pitch length. Because there is no thermal relaxation, the system can be driven either forwards or backwards from any light-activated intermediate state. We also describe reversible photocontrol between a two-dimensional diffraction state, a one-dimensional diffraction state and a diffraction ‘off’ state in a bilayer cell.

  7. Three-dimensional control of the helical axis of a chiral nematic liquid crystal by light.

    PubMed

    Zheng, Zhi-gang; Li, Yannian; Bisoyi, Hari Krishna; Wang, Ling; Bunning, Timothy J; Li, Quan

    2016-03-17

    Chiral nematic liquid crystals--otherwise referred to as cholesteric liquid crystals (CLCs)--are self-organized helical superstructures that find practical application in, for example, thermography, reflective displays, tuneable colour filters and mirrorless lasing. Dynamic, remote and three-dimensional control over the helical axis of CLCs is desirable, but challenging. For example, the orientation of the helical axis relative to the substrate can be changed from perpendicular to parallel by applying an alternating-current electric field, by changing the anchoring conditions of the substrate, or by altering the topography of the substrate's surface; separately, in-plane rotation of the helical axis parallel to the substrate can be driven by a direct-current field. Here we report three-dimensional manipulation of the helical axis of a CLC, together with inversion of its handedness, achieved solely with a light stimulus. We use this technique to carry out light-activated, wide-area, reversible two-dimensional beam steering--previously accomplished using complex integrated systems and optical phased arrays. During the three-dimensional manipulation by light, the helical axis undergoes, in sequence, a reversible transition from perpendicular to parallel, followed by in-plane rotation on the substrate surface. Such reversible manipulation depends on experimental parameters such as cell thickness, surface anchoring condition, and pitch length. Because there is no thermal relaxation, the system can be driven either forwards or backwards from any light-activated intermediate state. We also describe reversible photocontrol between a two-dimensional diffraction state, a one-dimensional diffraction state and a diffraction 'off' state in a bilayer cell. PMID:26950601

  8. Three dimensional visualization to support command and control

    SciTech Connect

    Van Slambrook, G.A.

    1997-04-01

    Virtual reality concepts are changing the way one thinks about and with computers. The concepts have already proven their potential usefulness in a broad range of applications. This research was concerned with exploring and demonstrating the utility of virtual reality in robotics and satellite command and control applications. The robotics work addressed the need to quickly build accurate graphical models of physical environments by allowing a user to interactively build a model of a remote environment by superimposing stereo graphics onto live stereo video. The satellite work addressed the fusion of multiple data sets or models into one synergistic display for more effective training, design, and command and control of satellite systems.

  9. Optical asymmetric cryptography using a three-dimensional space-based model

    NASA Astrophysics Data System (ADS)

    Chen, Wen; Chen, Xudong

    2011-07-01

    In this paper, we present optical asymmetric cryptography combined with a three-dimensional (3D) space-based model. An optical multiple-random-phase-mask encoding system is developed in the Fresnel domain, and one random phase-only mask and the plaintext are combined as a series of particles. Subsequently, the series of particles is translated along an axial direction, and is distributed in a 3D space. During image decryption, the robustness and security of the proposed method are further analyzed. Numerical simulation results are presented to show the feasibility and effectiveness of the proposed optical image encryption method.

  10. Three-dimensional representation of late-arriving photons for detecting inhomogeneities in diffuse optical tomography

    SciTech Connect

    Potlov, A Yu; Proskurin, S G; Frolov, S V

    2014-02-28

    A method for rapid detection of absorbing inhomogeneity in a strongly scattering medium having the properties of a biological tissue before the image reconstruction is described based on the principles of diffuse optical tomography. The method is based on preliminary processing of a three-dimensional surface obtained from the set of time-resolved data in the Cartesian coordinate system, followed by its conformal transformation into two surfaces in the cylindrical coordinate system. A specific feature of the method is the use of late-arriving photons, scattered and diffusely transmitted through an optically turbid object. (optical tomography)

  11. On three-dimensional reconstruction of optically thin solar emission sources

    NASA Technical Reports Server (NTRS)

    Kastner, S. O.; Thomas, R. J.; Wade, C.

    1977-01-01

    Calculations are given for constructing the three dimensional distribution of optically thin EUV emission sources associated with solar active regions, from two dimensional observations (projections) recorded by the spectroheliograph on the OSO 7 satellite. The relation of the method to other image reconstruction methods is briefly discussed as well as the special requirements imposed in the solar case such as a knowledge of the true solar rotation function. A useful correlation criterion for establishing the physical validity of solutions is given.

  12. Three-dimensional magnetic trap lattice on an atom chip with an optically induced fictitious magnetic field

    SciTech Connect

    Yan Hui

    2010-05-15

    A robust type of three-dimensional magnetic trap lattice on an atom chip combining optically induced fictitious magnetic field with microcurrent-carrying wires is proposed. Compared to the regular optical lattice, the individual trap in this three-dimensional magnetic trap lattice can be easily addressed and manipulated.

  13. Controlling tokamak geometry with three-dimensional magnetic perturbations

    SciTech Connect

    Bird, T. M.; Hegna, C. C.

    2014-10-15

    It is shown that small externally applied magnetic perturbations can significantly alter important geometric properties of magnetic flux surfaces in tokamaks. Through 3D shaping, experimentally relevant perturbation levels are large enough to influence turbulent transport and MHD stability in the pedestal region. It is shown that the dominant pitch-resonant flux surface deformations are primarily induced by non-resonant 3D fields, particularly in the presence of significant axisymmetric shaping. The spectral content of the applied 3D field can be used to control these effects.

  14. Design of virtual three-dimensional instruments for sound control

    NASA Astrophysics Data System (ADS)

    Mulder, Axel Gezienus Elith

    An environment for designing virtual instruments with 3D geometry has been prototyped and applied to real-time sound control and design. It enables a sound artist, musical performer or composer to design an instrument according to preferred or required gestural and musical constraints instead of constraints based only on physical laws as they apply to an instrument with a particular geometry. Sounds can be created, edited or performed in real-time by changing parameters like position, orientation and shape of a virtual 3D input device. The virtual instrument can only be perceived through a visualization and acoustic representation, or sonification, of the control surface. No haptic representation is available. This environment was implemented using CyberGloves, Polhemus sensors, an SGI Onyx and by extending a real- time, visual programming language called Max/FTS, which was originally designed for sound synthesis. The extension involves software objects that interface the sensors and software objects that compute human movement and virtual object features. Two pilot studies have been performed, involving virtual input devices with the behaviours of a rubber balloon and a rubber sheet for the control of sound spatialization and timbre parameters. Both manipulation and sonification methods affect the naturalness of the interaction. Informal evaluation showed that a sonification inspired by the physical world appears natural and effective. More research is required for a natural sonification of virtual input device features such as shape, taking into account possible co- articulation of these features. While both hands can be used for manipulation, left-hand-only interaction with a virtual instrument may be a useful replacement for and extension of the standard keyboard modulation wheel. More research is needed to identify and apply manipulation pragmatics and movement features, and to investigate how they are co-articulated, in the mapping of virtual object

  15. Three-Dimensional Composite Nanostructures for Lean NOx Emission Control

    SciTech Connect

    Gao, Pu-Xian

    2013-07-31

    This final report to the Department of Energy (DOE) and National Energy Technology Laboratory (NETL) for DE-EE0000210 covers the period from October 1, 2009 to July 31, 2013. Under this project, DOE awarded UConn about $1,248,242 to conduct the research and development on a new class of 3D composite nanostructure based catalysts for lean NOx emission control. Much of the material presented here has already been submitted to DOE/NETL in quarterly technical reports. In this project, through a scalable solution process, we have successfully fabricated a new class of catalytic reactors, i.e., the composite nanostructure array (nano-array) based catalytic converters. These nanocatalysts, distinct from traditional powder washcoat based catalytic converters, directly integrate monolithic substrates together with nanostructures with well-defined size and shape during the scalable hydrothermal process. The new monolithic nanocatalysts are demonstrated to be able to save raw materials including Pt-group metals and support metal oxides by an order of magnitude, while perform well at various oxidation (e.g., CO oxidation and NO oxidation) and reduction reactions (H{sub 2} reduction of NOx) involved in the lean NOx emissions. The size, shape and arrangement of the composite nanostructures within the monolithic substrates are found to be the key in enabling the drastically reduced materials usage while maintaining the good catalytic reactivity in the enabled devices. The further understanding of the reaction kinetics associated with the unique mass transport and surface chemistry behind is needed for further optimizing the design and fabrication of good nanostructure array based catalytic converters. On the other hand, the high temperature stability, hydrothermal aging stability, as well as S-poisoning resistance have been investigated in this project on the nanocatalysts, which revealed promising results toward good chemical and mechanical robustness, as well as S

  16. Dual focused coherent beams for three-dimensional optical trapping and continuous rotation of metallic nanostructures.

    PubMed

    Xu, Xiaohao; Cheng, Chang; Zhang, Yao; Lei, Hongxiang; Li, Baojun

    2016-01-01

    Metallic nanoparticles and nanowires are extremely important for nanoscience and nanotechnology. Techniques to optically trap and rotate metallic nanostructures can enable their potential applications. However, because of the destabilizing effects of optical radiation pressure, the optical trapping of large metallic particles in three dimensions is challenging. Additionally, the photothermal issues associated with optical rotation of metallic nanowires have far prevented their practical applications. Here, we utilize dual focused coherent beams to realize three-dimensional (3D) optical trapping of large silver particles. Continuous rotation of silver nanowires with frequencies measured in several hertz is also demonstrated based on interference-induced optical vortices with very low local light intensity. The experiments are interpreted by numerical simulations and calculations. PMID:27386838

  17. Dual focused coherent beams for three-dimensional optical trapping and continuous rotation of metallic nanostructures

    NASA Astrophysics Data System (ADS)

    Xu, Xiaohao; Cheng, Chang; Zhang, Yao; Lei, Hongxiang; Li, Baojun

    2016-07-01

    Metallic nanoparticles and nanowires are extremely important for nanoscience and nanotechnology. Techniques to optically trap and rotate metallic nanostructures can enable their potential applications. However, because of the destabilizing effects of optical radiation pressure, the optical trapping of large metallic particles in three dimensions is challenging. Additionally, the photothermal issues associated with optical rotation of metallic nanowires have far prevented their practical applications. Here, we utilize dual focused coherent beams to realize three-dimensional (3D) optical trapping of large silver particles. Continuous rotation of silver nanowires with frequencies measured in several hertz is also demonstrated based on interference-induced optical vortices with very low local light intensity. The experiments are interpreted by numerical simulations and calculations.

  18. Dual focused coherent beams for three-dimensional optical trapping and continuous rotation of metallic nanostructures

    PubMed Central

    Xu, Xiaohao; Cheng, Chang; Zhang, Yao; Lei, Hongxiang; Li, Baojun

    2016-01-01

    Metallic nanoparticles and nanowires are extremely important for nanoscience and nanotechnology. Techniques to optically trap and rotate metallic nanostructures can enable their potential applications. However, because of the destabilizing effects of optical radiation pressure, the optical trapping of large metallic particles in three dimensions is challenging. Additionally, the photothermal issues associated with optical rotation of metallic nanowires have far prevented their practical applications. Here, we utilize dual focused coherent beams to realize three-dimensional (3D) optical trapping of large silver particles. Continuous rotation of silver nanowires with frequencies measured in several hertz is also demonstrated based on interference-induced optical vortices with very low local light intensity. The experiments are interpreted by numerical simulations and calculations. PMID:27386838

  19. Security authentication with a three-dimensional optical phase code using random forest classifier.

    PubMed

    Markman, Adam; Carnicer, Artur; Javidi, Bahram

    2016-06-01

    An object with a unique three-dimensional (3D) optical phase mask attached is analyzed for security and authentication. These 3D optical phase masks are more difficult to duplicate or to have a mathematical formulation compared with 2D masks and thus have improved security capabilities. A quick response code was modulated using a random 3D optical phase mask generating a 3D optical phase code (OPC). Due to the scattering of light through the 3D OPC, a unique speckle pattern based on the materials and structure in the 3D optical phase mask is generated and recorded on a CCD device. Feature extraction is performed by calculating the mean, variance, skewness, kurtosis, and entropy for each recorded speckle pattern. The random forest classifier is used for authentication. Optical experiments demonstrate the feasibility of the authentication scheme. PMID:27409445

  20. Magnification of three-dimensional optical image without distortion in dynamic holographic projection

    NASA Astrophysics Data System (ADS)

    Jia, Jia; Wang, Yongtian; Liu, Juan; Li, Xin; Xie, Jinghui

    2011-11-01

    We propose a simple technique to enlarge the reconstructed three-dimensional (3D) optical image and shorten the reconstructed distance simultaneously in real time holographic projection using a conventional lens or concave reflecting mirror based on the optical reversibility theorem. The main factors causing the longitudinal and transversal distortions of a 3D enlarged optical image are analyzed, and the 3D optical images are enlarged where severe distortions are precompensated by constructing objects with distortions directly instead of computing the precompensated phase iteratively so that it does not increase the computing time. Numerical simulations and optical experiments are performed for magnifying a simple cubic model. The results show that a 3D enlarged optical image is achieved successfully without any distortion and the reconstructed distance is shortened simultaneously. It is believed that this proposed technique is useful for 3D real time holographic projection in the future.

  1. Three-Dimensional Control of DNA Hybridization by Orthogonal Two-Color Two-Photon Uncaging.

    PubMed

    Fichte, Manuela A H; Weyel, Xenia M M; Junek, Stephan; Schäfer, Florian; Herbivo, Cyril; Goeldner, Maurice; Specht, Alexandre; Wachtveitl, Josef; Heckel, Alexander

    2016-07-25

    We successfully introduced two-photon-sensitive photolabile groups ([7-(diethylamino)coumarin-4-yl]methyl and p-dialkylaminonitrobiphenyl) into DNA strands and demonstrated their suitability for three-dimensional photorelease. To visualize the uncaging, we used a fluorescence readout based on double-strand displacement in a hydrogel and in neurons. Orthogonal two-photon uncaging of the two cages is possible, thus enabling complex scenarios of three-dimensional control of hybridization with light. PMID:27294300

  2. Microfluidic device for the formation of optically excitable, three-dimensional, compartmentalized motor units.

    PubMed

    Uzel, Sebastien G M; Platt, Randall J; Subramanian, Vidya; Pearl, Taylor M; Rowlands, Christopher J; Chan, Vincent; Boyer, Laurie A; So, Peter T C; Kamm, Roger D

    2016-08-01

    Motor units are the fundamental elements responsible for muscle movement. They are formed by lower motor neurons and their muscle targets, synapsed via neuromuscular junctions (NMJs). The loss of NMJs in neurodegenerative disorders (such as amyotrophic lateral sclerosis or spinal muscle atrophy) or as a result of traumatic injuries affects millions of lives each year. Developing in vitro assays that closely recapitulate the physiology of neuromuscular tissues is crucial to understand the formation and maturation of NMJs, as well as to help unravel the mechanisms leading to their degeneration and repair. We present a microfluidic platform designed to coculture myoblast-derived muscle strips and motor neurons differentiated from mouse embryonic stem cells (ESCs) within a three-dimensional (3D) hydrogel. The device geometry mimics the spinal cord-limb physical separation by compartmentalizing the two cell types, which also facilitates the observation of 3D neurite outgrowth and remote muscle innervation. Moreover, the use of compliant pillars as anchors for muscle strips provides a quantitative functional readout of force generation. Finally, photosensitizing the ESC provides a pool of source cells that can be differentiated into optically excitable motor neurons, allowing for spatiodynamic, versatile, and noninvasive in vitro control of the motor units. PMID:27493991

  3. Microfluidic device for the formation of optically excitable, three-dimensional, compartmentalized motor units

    PubMed Central

    Uzel, Sebastien G. M.; Platt, Randall J.; Subramanian, Vidya; Pearl, Taylor M.; Rowlands, Christopher J.; Chan, Vincent; Boyer, Laurie A.; So, Peter T. C.; Kamm, Roger D.

    2016-01-01

    Motor units are the fundamental elements responsible for muscle movement. They are formed by lower motor neurons and their muscle targets, synapsed via neuromuscular junctions (NMJs). The loss of NMJs in neurodegenerative disorders (such as amyotrophic lateral sclerosis or spinal muscle atrophy) or as a result of traumatic injuries affects millions of lives each year. Developing in vitro assays that closely recapitulate the physiology of neuromuscular tissues is crucial to understand the formation and maturation of NMJs, as well as to help unravel the mechanisms leading to their degeneration and repair. We present a microfluidic platform designed to coculture myoblast-derived muscle strips and motor neurons differentiated from mouse embryonic stem cells (ESCs) within a three-dimensional (3D) hydrogel. The device geometry mimics the spinal cord–limb physical separation by compartmentalizing the two cell types, which also facilitates the observation of 3D neurite outgrowth and remote muscle innervation. Moreover, the use of compliant pillars as anchors for muscle strips provides a quantitative functional readout of force generation. Finally, photosensitizing the ESC provides a pool of source cells that can be differentiated into optically excitable motor neurons, allowing for spatiodynamic, versatile, and noninvasive in vitro control of the motor units. PMID:27493991

  4. High-beamforming power-code-multiplexed optical scanner for three-dimensional displays

    NASA Astrophysics Data System (ADS)

    Arain, Muzammil A.; Riza, Nabeel A.

    2003-11-01

    Three dimensional (3-D) displays play an important role in the field of entertainment. Today, research is being conducted to produce 3-D displays to meet the complex needs of high-functionality full motion 3D displays at reasonable cost, but without glasses, complicated viewing arrangements or restricted fields of view. Other applications for 3-D displays include but are not limited to CAD/Design simulation, advanced data representation, displaying complex 3-D information for automotive design, medical imaging, advanced navigation displays, scientific visualization, and advertising. The key element in all these applications is an optical beam scanner that can display 3-D images for large viewing angles. Our proposed Code Multiplexed Optical Scanner (C-MOS) can fulfill all these requirements with its high beamforming power capabilities. Our proposed experiment demonstrates three dimensional (3-D) beam scanning with large angles (e.g., > 160°), large centimeter size aperture, and scanning speed of <300 μsec. The robust construction and simple operation of the C-MOS makes it very useful and attractive for deployment in the field of entertainment, defense and medical imaging. Here we report the application of the C-MOS for three dimensional (3-D) displays.

  5. Experimental Study of the Temporal Nature of an Actively Controlled Three Dimensional Turret Wake

    NASA Astrophysics Data System (ADS)

    Shea, Patrick; Glauser, Mark

    2011-11-01

    Experimental measurements have been performed to characterize the actively controlled wake of a three-dimensional, non- conformal turret which is a bluff body commonly used for housing optical systems on airborne platforms. As a bluff body, turrets can generate strong turbulent flow fields that degrade the performance of the optical systems and the aircraft. Experiments were performed in a low-speed wind tunnel at Syracuse University using particle image velocimetry and dynamic pressure measurements with the objective of developing a better understanding of the spatial and temporal nature of the wake flow field. Active control was achieved using dynamic suction in the vicinity of the turret aperture and was found to have a significant impact on the structure of the wake as well as the temporal characteristics of the flow field. With a better understanding of the wake characteristics, closed-loop, active flow control systems will be developed to help reduce fluctuating loading and aero- optical distortions associated with the turbulent flow field.

  6. DNA origami-directed, discrete three-dimensional plasmonic tetrahedron nanoarchitectures with tailored optical chirality.

    PubMed

    Dai, Gaole; Lu, Xuxing; Chen, Zhong; Meng, Chun; Ni, Weihai; Wang, Qiangbin

    2014-04-23

    Discrete, three-dimensional (3D) gold nanoparticle (AuNP) tetrahedron nanoarchitectures are successfully self-assembled with DNA origami as template with high purity (>85%). A distinct plasmonic chiral response is experimentally observed from the AuNP tetrahedron nanoarchitectures and appears in a configuration-dependent manner. The chiral optical properties are then rationally engineered by modifying the structural parameters including the AuNP size and interparticle distance. Theoretical study of the AuNP tetrahedron nanoarchitectures shows the dependence of the chiral optical property on the AuNP size and interparticle distance, consistent with the ensemble averaged measurements. PMID:24716524

  7. Review on recent progress of three-dimensional optical photonic crystal

    SciTech Connect

    Hsieh, Mei-Li; Kuang, Ping; Bur, James A.; Lin, Shawn-Yu; John, Sajeev

    2014-03-31

    Over the past two decades, the field of photonic-crystals has become one of the most influential realms of contemporary optics. In this paper, we will review two recent experimental progresses in three-dimensional photonic-crystal operating in optical wavelengths. The first is the observation of anomalous light-refraction, an acutely negative refraction, in a 3D photonic-crystal for light trapping, guiding and near-unity absorption. The second is the observation of quasi-coherent thermal emission from an all-metallic 3D photonic-crystal at elevated temperatures.

  8. Three-dimensional arrays of submicron particles generated by a four-beam optical lattice.

    PubMed

    Slama-Eliau, B N; Raithel, G

    2011-05-01

    Using an optical lattice formed by four laser beams, we obtain three-dimensional light-induced crystals of 490-nm-diameter polystyrene spheres in solution. The setup yields face-centered orthorhombic optical crystals of a packing density of about 40%. An alignment procedure is developed in which the crystals are first prepared near a sample wall, and then in the bulk of the sample. A series of tests is performed that demonstrate particle trapping in all three dimensions. For one case, the trapping force is measured, and good agreement with a simple theoretical model is found. Possible applications are discussed. PMID:21728533

  9. Optical beam deflection noncontact atomic force microscope optimized with three-dimensional beam adjustment mechanism

    NASA Astrophysics Data System (ADS)

    Yokoyama, Kousuke; Ochi, Taketoshi; Uchihashi, Takayuki; Ashino, Makoto; Sugawara, Yasuhiro; Suehira, Nobuhito; Morita, Seizo

    2000-01-01

    We present a design and performance of an optical beam deflection noncontact atomic force microscope (nc-AFM). The optical deflection detection system can be optimized by the three-dimensional beam position adjustment mechanism (the slider which mounts laser diode module, the spherical rotors with mirror and the cylinder which mounts quadrant photodiode) using inertial stepping motors in an ultrahigh vacuum (UHV). The samples and cantilevers are easily exchanged in UHV. The performance of the instrument is demonstrated with the atomically resolved nc-AFM images for various surfaces such as Si(111)7×7, Cu(111), TiO2(110), and thymine/highly oriented pyrolytic graphite.

  10. Multi-particle three-dimensional coordinate estimation in real-time optical manipulation

    NASA Astrophysics Data System (ADS)

    Dam, J. S.; Perch-Nielsen, I.; Palima, D.; Gluckstad, J.

    2009-11-01

    We have previously shown how stereoscopic images can be obtained in our three-dimensional optical micromanipulation system [J. S. Dam et al, Opt. Express 16, 7244 (2008)]. Here, we present an extension and application of this principle to automatically gather the three-dimensional coordinates for all trapped particles with high tracking range and high reliability without requiring user calibration. Through deconvolving of the red, green, and blue colour planes to correct for bleeding between colour planes, we show that we can extend the system to also utilize green illumination, in addition to the blue and red. Applying the green colour as on-axis illumination yields redundant information for enhanced error correction, which is used to verify the gathered data, resulting in reliable coordinates as well as producing visually attractive images.

  11. Three-dimensional analysis of optical forces generated by an active tractor beam using radial polarization.

    PubMed

    Carretero, Luis; Acebal, Pablo; Blaya, Salvador

    2014-02-10

    We theoretically study the three-dimensional behavior of nanoparticles in an active optical conveyor. To do this, we solved the Langevin equation when the forces are generated by a focusing system at the near field. Analytical expressions for the optical forces generated by the optical conveyor were obtained by solving the Richards and Wolf vectorial diffraction integrals in an approximated form when a mask of two annular pupils is illuminated by a radially polarized Hermite-Gauss beam. Trajectories, in both the transverse plane and the longitudinal direction, are analyzed showing that the behavior of the optical conveyor can be optimized by conveniently choosing the configuration of the mask of the two annular pupils (inner and outer radius of the two rings) in order to trap and transport all particles at the focal plane. PMID:24663619

  12. Optical cryptography topology based on a three-dimensional particle-like distribution and diffractive imaging.

    PubMed

    Chen, Wen; Chen, Xudong

    2011-05-01

    In recent years, coherent diffractive imaging has been considered as a promising alternative for information retrieval instead of conventional interference methods. Coherent diffractive imaging using the X-ray light source has opened up a new research perspective for the measurement of non-crystalline and biological specimens, and can achieve unprecedentedly high resolutions. In this paper, we show how a three-dimensional (3D) particle-like distribution and coherent diffractive imaging can be applied for a study of optical cryptography. An optical multiple-random-phase-mask encoding approach is used, and the plaintext is considered as a series of particles distributed in a 3D space. A topology concept is also introduced into the proposed optical cryptosystem. During image decryption, a retrieval algorithm is developed to extract the plaintext from the ciphertexts. In addition, security and advantages of the proposed optical cryptography topology are also analyzed. PMID:21643154

  13. Dynamic control of polarization-inverted modes in three-dimensionally trapped multiple nanogaps

    SciTech Connect

    Tamura, Mamoru; Iida, Takuya

    2015-12-28

    We propose a guiding principle for the dynamic control of polarization-inverted modes in multiple nanogaps for unconventional optical transitions of molecules at arbitrary three-dimensional spatial positions. Based on our developed self-consistent theory for the optical assembly of nanoparticles (NPs), we clarified that spherical silver NPs can be optically trapped and aligned in the light-propagating direction via longitudinally polarized light; they form a rod-like nano-composite with multiple nanogaps. During trapping, there is a possibility that an additional irradiation of linearly polarized far-field light may excite the bonding and anti-bonding dark plasmon modes with low radiative decay rate of several meV via cancellation of inverted polarization. Our finding reveals that not only the steep change in the enhanced intensity of light field but also the phase inversion of light field between the dynamically formed nanogaps will pave the way to the highly sensitive sensors for molecules, the unconventional chemical reactions, and so on.

  14. Adaptive optics enables three-dimensional single particle tracking at the sub-millisecond scale

    NASA Astrophysics Data System (ADS)

    Juette, Manuel F.; Rivera-Molina, Felix E.; Toomre, Derek K.; Bewersdorf, Joerg

    2013-04-01

    We present the integration of an adaptive optics element into a feedback-driven single particle tracking microscope. Our instrument captures three-dimensional (3D) trajectories with down to 130 μs temporal resolution for dynamic studies on the nanoscale. Our 3D beam steering approach tracks particles over an axial range of >6 μm with ˜2 ms mechanical response times and isolates the sample from any tracking motion. Tracking of transport vesicles containing Alexa488-labeled transferrin glycoprotein in living cells demonstrates the speed and sensitivity of our instrument.

  15. Unconventional optical Tamm states in metal-terminated three-dimensional photonic crystals

    NASA Astrophysics Data System (ADS)

    Korovin, Alexander V.; Romanov, Sergei G.

    2016-03-01

    Unconventional optical Tamm surface states have been demonstrated in transmission and reflectance spectra of three-dimensional opal photonic crystals coated by thin metal films. These states appear in registry with diffraction resonances and localize the electromagnetic energy in asymmetric resonators formed by stacks of lattice planes and metal semishells. Tamm defect states provide the bypass for light at the edges of the Bragg diffraction resonances and thus reduce the diffraction efficiency. Despite the hidden nature of this effect, its magnitude is comparable to the extraordinary transmission associated with the surface-plasmon polaritons that are simultaneously excited at the surfaces of the corrugated metal films.

  16. Three-dimensional shape measurement with sinusoidal phase-modulating fiber-optic interferometer fringe

    NASA Astrophysics Data System (ADS)

    Lv, Changrong; Duan, Fajie; Fu, Xiao; Huang, Tingting

    2016-05-01

    A three-dimensional (3-D) shape measurement system using a fiber-optic interferometer fringe projector is presented and demonstrated. The system utilizes sinusoidal phase shifting interferometry to detect the desired phase which is improved by introducing constant scaling factors from linear phase shift interferometry algorithm, and the relationship between the modulation voltage and the phase modulation coefficient is analyzed; the system also utilizes the reflection signal to realize measurement of the disturbance and feed back to the modulated signal. Practical experiments validate the feasibility of this method. The phase accuracy is nearly 37.6 mrad and the measurement error is about 10 nm.

  17. Sirolimus-eluting stent fracture detection by three-dimensional optical coherence tomography.

    PubMed

    Okamura, Takayuki; Matsuzaki, Masunori

    2012-03-01

    Stent fracture has emerged as a complication of drug-eluting stent and is now recognized as contributing to in-stent restenosis and possibly stent thrombosis. Although optical coherence tomography (OCT) can detect stent fractures in the absence of circumference struts, it is challenging to visualize stent fractures with only cross-sectional OCT images. We describe two cases of restenosis with stent fracture detected by a novel three-dimensional OCT image reconstruction technique. This technique allows identification of a single stent fracture even in the absence of angiographic signs. PMID:21805594

  18. In-Situ Three-Dimensional Shape Rendering from Strain Values Obtained Through Optical Fiber Sensors

    NASA Technical Reports Server (NTRS)

    Chan, Hon Man (Inventor); Parker, Jr., Allen R. (Inventor)

    2015-01-01

    A method and system for rendering the shape of a multi-core optical fiber or multi-fiber bundle in three-dimensional space in real time based on measured fiber strain data. Three optical fiber cores arc arranged in parallel at 120.degree. intervals about a central axis. A series of longitudinally co-located strain sensor triplets, typically fiber Bragg gratings, are positioned along the length of each fiber at known intervals. A tunable laser interrogates the sensors to detect strain on the fiber cores. Software determines the strain magnitude (.DELTA.L/L) for each fiber at a given triplet, but then applies beam theory to calculate curvature, beading angle and torsion of the fiber bundle, and from there it determines the shape of the fiber in s Cartesian coordinate system by solving a series of ordinary differential equations expanded from the Frenet-Serrat equations. This approach eliminates the need for computationally time-intensive curve-tilting and allows the three-dimensional shape of the optical fiber assembly to be displayed in real-time.

  19. Physical origin of the high energy optical response of three dimensional photonic crystals.

    PubMed

    Dorado, Luis A; Depine, Ricardo A; Lozano, Gabriel; Míguez, Hernán

    2007-12-24

    The physical origin of the optical response observed in three-dimensional photonic crystals when the photon wavelength is equal or lower than the lattice parameter still remains unsatisfactorily explained and is the subject of an intense and interesting debate. Herein we demonstrate for the first time that all optical spectra features in this high energy region of photonic crystals arise from electromagnetic resonances within the ordered array, modified by the interplay between these resonances with the opening of diffraction channels, the presence of imperfections and finite size effects. All these four phenomena are taken into account in our theoretical approach to the problem, which allows us to provide a full description of the observed optical response based on fundamental phenomena as well as to attain fair fittings of experimental results. PMID:19551072

  20. Optical tuning of three-dimensional photonic crystals fabricated by femtosecond direct writing

    NASA Astrophysics Data System (ADS)

    McPhail, Dennis; Straub, Martin; Gu, Min

    2005-08-01

    In this letter, we report on an optically tunable three-dimensional photonic crystal that exhibits main gaps in the 3-4μm range. The photonic crystal is manufactured via a femtosecond direct writing technique. Optical tuning is achieved by a luminary polling technique with a low-power polarized laser beam. The refractive index variation resulting from liquid-crystal rotation causes a shift in the photonic band gap of up to 65 nm with an extinction of transmission of up to 70% in the stacking direction. Unlike other liquid-crystal tuning techniques where a pregenerated structure is infiltrated, this optical tuning method is a one-step process that allows arbitrary structures to be written into a solid liquid-crystal-polymer composite and leads to a high dielectric contrast.

  1. Optical spectroscopy study of the three-dimensional Dirac semimetal ZrTe5

    SciTech Connect

    Chen, R. Y.; Gu, G. D.; Zhang, S. J.; Schneeloch, J. A.; Zhang, C.; Li, Q.; Wang, N. L.

    2015-08-05

    Three-dimensional (3D) topological Dirac materials have been under intensive study recently. The layered compound ZrTe5 has been suggested to be one such material as a result of transport and angle-resolved photoemission spectroscopy experiments. Here, we perform infrared reflectivity measurements to investigate the underlying physics of this material. The derived optical conductivity increases linearly with frequency below normal interband transitions, which provides optical spectroscopic proof of a 3D Dirac semimetal. In addition, the plasma edge shifts dramatically to lower energy upon temperature cooling, which might be due to the shrinking of the lattice parameters. Additionally, an extremely sharp peak shows up in the frequency-dependent optical conductivity, indicating the presence of a Van Hove singularity in the joint density of state.

  2. Optical spectroscopy study of the three-dimensional Dirac semimetal ZrTe5

    DOE PAGESBeta

    Chen, R. Y.; Gu, G. D.; Zhang, S. J.; Schneeloch, J. A.; Zhang, C.; Li, Q.; Wang, N. L.

    2015-08-05

    Three-dimensional (3D) topological Dirac materials have been under intensive study recently. The layered compound ZrTe5 has been suggested to be one such material as a result of transport and angle-resolved photoemission spectroscopy experiments. Here, we perform infrared reflectivity measurements to investigate the underlying physics of this material. The derived optical conductivity increases linearly with frequency below normal interband transitions, which provides optical spectroscopic proof of a 3D Dirac semimetal. In addition, the plasma edge shifts dramatically to lower energy upon temperature cooling, which might be due to the shrinking of the lattice parameters. Additionally, an extremely sharp peak shows upmore » in the frequency-dependent optical conductivity, indicating the presence of a Van Hove singularity in the joint density of state.« less

  3. Optical spectroscopy study of the three-dimensional Dirac semimetal ZrTe5

    NASA Astrophysics Data System (ADS)

    Chen, R. Y.; Zhang, S. J.; Schneeloch, J. A.; Zhang, C.; Li, Q.; Gu, G. D.; Wang, N. L.

    2015-08-01

    Three-dimensional (3D) topological Dirac materials have been under intensive study recently. The layered compound ZrTe5 has been suggested to be one such material as a result of transport and angle-resolved photoemission spectroscopy experiments. Here, we perform infrared reflectivity measurements to investigate the underlying physics of this material. The derived optical conductivity increases linearly with frequency below normal interband transitions, which provides optical spectroscopic proof of a 3D Dirac semimetal. In addition, the plasma edge shifts dramatically to lower energy upon temperature cooling, which might be due to the shrinking of the lattice parameters. In addition, an extremely sharp peak shows up in the frequency-dependent optical conductivity, indicating the presence of a Van Hove singularity in the joint density of state.

  4. In vivo optic nerve head biomechanics: performance testing of a three-dimensional tracking algorithm

    PubMed Central

    Girard, Michaël J. A.; Strouthidis, Nicholas G.; Desjardins, Adrien; Mari, Jean Martial; Ethier, C. Ross

    2013-01-01

    Measurement of optic nerve head (ONH) deformations could be useful in the clinical management of glaucoma. Here, we propose a novel three-dimensional tissue-tracking algorithm designed to be used in vivo. We carry out preliminary verification of the algorithm by testing its accuracy and its robustness. An algorithm based on digital volume correlation was developed to extract ONH tissue displacements from two optical coherence tomography (OCT) volumes of the ONH (undeformed and deformed). The algorithm was tested by applying artificial deformations to a baseline OCT scan while manipulating speckle noise, illumination and contrast enhancement. Tissue deformations determined by our algorithm were compared with the known (imposed) values. Errors in displacement magnitude, orientation and strain decreased with signal averaging and were 0.15 µm, 0.15° and 0.0019, respectively (for optimized algorithm parameters). Previous computational work suggests that these errors are acceptable to provide in vivo characterization of ONH biomechanics. Our algorithm is robust to OCT speckle noise as well as to changes in illumination conditions, and increasing signal averaging can produce better results. This algorithm has potential be used to quantify ONH three-dimensional strains in vivo, of benefit in the diagnosis and identification of risk factors in glaucoma. PMID:23883953

  5. Three-dimensional printed optical phantoms with customized absorption and scattering properties.

    PubMed

    Diep, Phuong; Pannem, Sanjana; Sweer, Jordan; Lo, Justine; Snyder, Michael; Stueber, Gabriella; Zhao, Yanyu; Tabassum, Syeda; Istfan, Raeef; Wu, Junjie; Erramilli, Shyamsunder; Roblyer, Darren

    2015-11-01

    Three-dimensional (3D) printing offers the promise of fabricating optical phantoms with arbitrary geometry, but commercially available thermoplastics provide only a small range of physiologically relevant absorption (µa) and reduced scattering (µs`) values. Here we demonstrate customizable acrylonitrile butadiene styrene (ABS) filaments for dual extrusion 3D printing of tissue mimicking optical phantoms. µa and µs` values were adjusted by incorporating nigrosin and titanium dioxide (TiO2) in the filament extrusion process. A wide range of physiologically relevant optical properties was demonstrated with an average repeatability within 11.5% for µa and 7.71% for µs`. Additionally, a mouse-simulating phantom, which mimicked both the geometry and optical properties of a hairless mouse with an implanted xenograft tumor, was printed using dual extrusion methods. 3D printed tumor optical properties matched the live tumor with less than 3% error at a wavelength of 659 nm. 3D printing with user defined optical properties may provide a viable method for durable optically diffusive phantoms for instrument characterization and calibration. PMID:26600987

  6. Three-dimensional printed optical phantoms with customized absorption and scattering properties

    PubMed Central

    Diep, Phuong; Pannem, Sanjana; Sweer, Jordan; Lo, Justine; Snyder, Michael; Stueber, Gabriella; Zhao, Yanyu; Tabassum, Syeda; Istfan, Raeef; Wu, Junjie; Erramilli, Shyamsunder; Roblyer, Darren

    2015-01-01

    Three-dimensional (3D) printing offers the promise of fabricating optical phantoms with arbitrary geometry, but commercially available thermoplastics provide only a small range of physiologically relevant absorption (µa) and reduced scattering (µs`) values. Here we demonstrate customizable acrylonitrile butadiene styrene (ABS) filaments for dual extrusion 3D printing of tissue mimicking optical phantoms. µa and µs` values were adjusted by incorporating nigrosin and titanium dioxide (TiO2) in the filament extrusion process. A wide range of physiologically relevant optical properties was demonstrated with an average repeatability within 11.5% for µa and 7.71% for µs`. Additionally, a mouse-simulating phantom, which mimicked both the geometry and optical properties of a hairless mouse with an implanted xenograft tumor, was printed using dual extrusion methods. 3D printed tumor optical properties matched the live tumor with less than 3% error at a wavelength of 659 nm. 3D printing with user defined optical properties may provide a viable method for durable optically diffusive phantoms for instrument characterization and calibration. PMID:26600987

  7. Atoms in the Lowest Motional Band of a Three-Dimensional Optical Lattice

    SciTech Connect

    Mueller-Seydlitz, T.; Hartl, M.; Brezger, B.; Haensel, H.; Keller, C.; Schnetz, A.; Spreeuw, R.; Pfau, T.; Mlynek, J.

    1997-02-01

    We investigate the storage of atoms in an optical lattice, using light detuned up to 2nm to the blue of an atomic transition. Argon atoms were laser cooled in the metastable state 1s{sub 5}(J=2) and optically pumped to the state 1s{sub 3}(J=0). Subsequently these atoms were confined to the nodes of a three-dimensional interference pattern and stored for up to 1s. We resolved the bands of motion in the lattice using a time-of-flight technique, and observed band-dependent losses leading to the preparation of atoms in the motional ground band. {copyright} {ital 1997} {ital The American Physical Society}

  8. Three-dimensional optical disk data storage via the localized alteration of a format hologram.

    PubMed

    McLeod, R R; Daiber, A J; Honda, T; McDonald, M E; Robertson, T L; Slagle, T; Sochava, S L; Hesselink, L

    2008-05-10

    Three-dimensional optical data storage is demonstrated in an initially homogenous volume by first recording a reflection grating in a holographic photopolymer. This causes the entire volume to be weakly reflecting to a confocal read/write head. Superposition of two or three such gratings with slightly different k-vectors creates a track and layer structure that specialized servo detection optics can use to lock the focus to these deeply-buried tracks. Writing is accomplished by locally modifying the reflectivity of the preexisting hologram. This modification can take the form of ablation, inelastic deformation via heating at the focus, or erasure via linear or two-photon continued polymerization in the previously unexposed fringes of the hologram. Storage by each method is demonstrated with up to eight data layers separated by as little as 12 microns. PMID:18470266

  9. Three-dimensional time-resolved optical mammography of the uncompressed breast

    SciTech Connect

    Enfield, Louise C.; Gibson, Adam P.; Everdell, Nicholas L.; Delpy, David T.; Schweiger, Martin; Arridge, Simon R.; Richardson, Caroline; Keshtgar, Mohammad; Douek, Michael; Hebden, Jeremy C

    2007-06-10

    Optical tomography is being developed as a means of detecting and specifying disease in the adult female breast. We present a series of clinical three-dimensional optical images obtained with a 32-channel time-resolvedsystem and a liquid-coupled interface. Patients place their breasts in a hemispherical cup to whichsources and detectors are coupled, and the remaining space is filled with a highly scattering fluid. Acohort of 38 patients has been scanned, with a variety of benign and malignant lesions. Images show that hypervascularization associated with tumors provides very high contrast due to increased absorption by hemoglobin. Only half of the fibroadenomas scanned could be observed, but of those that could bedetected, all but one revealed an apparent increase in blood volume and a decrease in scatter and oxygen saturation.

  10. Weyl points in three-dimensional optical lattices: synthetic magnetic monopoles in momentum space

    NASA Astrophysics Data System (ADS)

    Buljan, Hrvoje; Dubcek, Tena; Kennedy, Colin; Lu, Ling; Ketterle, Wolfgang; Soljacic, Marin

    2015-05-01

    We show that Hamiltonians with Weyl points can be realized for ultracold atoms using laser-assisted tunneling in three-dimensional (3D) optical lattices. Weyl points are synthetic magnetic monopoles that exhibit a robust, 3D linear dispersion (e.g., see). They are associated with many interesting topological states of matter, such as Weyl semimetals and chiral Weyl fermions. However, Weyl points have yet to be experimentally observed in any system. We show that this elusive goal is well-within experimental reach with an extension of the techniques recently used to obtain the Harper Hamiltonian. We propose using laser assisted tunneling to create a 3D optical lattice, with specifically designed hopping between lattice sites that breaks inversion symmetry. The design leads to creation of four Weyl points in the Brillouin zone of the lattice, which are verified to be monopoles of the synthetic magnetic field. Supported by the Unity through Knowledge Fund (Grant 5/13).

  11. Three-dimensional fuse deposition modeling of tissue-simulating phantom for biomedical optical imaging

    NASA Astrophysics Data System (ADS)

    Dong, Erbao; Zhao, Zuhua; Wang, Minjie; Xie, Yanjun; Li, Shidi; Shao, Pengfei; Cheng, Liuquan; Xu, Ronald X.

    2015-12-01

    Biomedical optical devices are widely used for clinical detection of various tissue anomalies. However, optical measurements have limited accuracy and traceability, partially owing to the lack of effective calibration methods that simulate the actual tissue conditions. To facilitate standardized calibration and performance evaluation of medical optical devices, we develop a three-dimensional fuse deposition modeling (FDM) technique for freeform fabrication of tissue-simulating phantoms. The FDM system uses transparent gel wax as the base material, titanium dioxide (TiO2) powder as the scattering ingredient, and graphite powder as the absorption ingredient. The ingredients are preheated, mixed, and deposited at the designated ratios layer-by-layer to simulate tissue structural and optical heterogeneities. By printing the sections of human brain model based on magnetic resonance images, we demonstrate the capability for simulating tissue structural heterogeneities. By measuring optical properties of multilayered phantoms and comparing with numerical simulation, we demonstrate the feasibility for simulating tissue optical properties. By creating a rat head phantom with embedded vasculature, we demonstrate the potential for mimicking physiologic processes of a living system.

  12. Three-dimensional mapping of optical near field of a nanoscale bowtie antenna.

    PubMed

    Guo, Rui; Kinzel, Edward C; Li, Yan; Uppuluri, Sreemanth M; Raman, Arvind; Xu, Xianfan

    2010-03-01

    Ridge nanoscale aperture antennas have been shown to be a high transmission nanoscale light source. They provide a small, polarization-dependent near-field optical spot with much higher transmission efficiency than circularly-shaped apertures with similar field confinement. This provides significant motivations to understand the electromagnetic fields in the immediate proximity to the apertures. This paper describes an experimental three-dimensional optical near-field mapping of a bowtie nano-aperture. The measurements are performed using a home-built near-field scanning optical microscopy (NSOM) system. An aluminum coated Si(3)N(4) probe with a 150 nm hole at the tip is used to collect optical signals. Both contact and constant-height scan (CHS) modes are used to measure the optical intensity at different longitudinal distances. A force-displacement curve is used to determine the tip-sample separation distance allowing the optical intensities to be mapped at distances as small as 50 nm and up to micrometer level. The experimental results also demonstrate the polarization dependence of the transmission through the bowtie aperture. Numerical simulations are also performed to compute the aperture's electromagnetic near-field distribution and are shown to agree with the experimental results. PMID:20389507

  13. Optical computed tomography of radiochromic gels for accurate three-dimensional dosimetry

    NASA Astrophysics Data System (ADS)

    Babic, Steven

    In this thesis, three-dimensional (3-D) radiochromic Ferrous Xylenol-orange (FX) and Leuco Crystal Violet (LCV) micelles gels were imaged by laser and cone-beam (Vista(TM)) optical computed tomography (CT) scanners. The objective was to develop optical CT of radiochromic gels for accurate 3-D dosimetry of intensity-modulated radiation therapy (IMRT) and small field techniques used in modern radiotherapy. First, the cause of a threshold dose response in FX gel dosimeters when scanned with a yellow light source was determined. This effect stems from a spectral sensitivity to multiple chemical complexes that are at different dose levels between ferric ions and xylenol-orange. To negate the threshold dose, an initial concentration of ferric ions is needed in order to shift the chemical equilibrium so that additional dose results in a linear production of a coloured complex that preferentially absorbs at longer wavelengths. Second, a low diffusion leuco-based radiochromic gel consisting of Triton X-100 micelles was developed. The diffusion coefficient of the LCV micelle gel was found to be minimal (0.036 + 0.001 mm2 hr-1 ). Although a dosimetric characterization revealed a reduced sensitivity to radiation, this was offset by a lower auto-oxidation rate and base optical density, higher melting point and no spectral sensitivity. Third, the Radiological Physics Centre (RPC) head-and-neck IMRT protocol was extended to 3-D dose verification using laser and cone-beam (Vista(TM)) optical CT scans of FX gels. Both optical systems yielded comparable measured dose distributions in high-dose regions and low gradients. The FX gel dosimetry results were crossed checked against independent thermoluminescent dosimeter and GAFChromicRTM EBT film measurements made by the RPC. It was shown that optical CT scanned FX gels can be used for accurate IMRT dose verification in 3-D. Finally, corrections for FX gel diffusion and scattered stray light in the Vista(TM) scanner were developed to

  14. Extracting Surface Activation Time from the Optically Recorded Action Potential in Three-Dimensional Myocardium

    PubMed Central

    Walton, Richard D.; Smith, Rebecca M.; Mitrea, Bogdan G.; White, Edward; Bernus, Olivier; Pertsov, Arkady M.

    2012-01-01

    Optical mapping has become an indispensible tool for studying cardiac electrical activity. However, due to the three-dimensional nature of the optical signal, the optical upstroke is significantly longer than the electrical upstroke. This raises the issue of how to accurately determine the activation time on the epicardial surface. The purpose of this study was to establish a link between the optical upstroke and exact surface activation time using computer simulations, with subsequent validation by a combination of microelectrode recordings and optical mapping experiments. To simulate wave propagation and associated optical signals, we used a hybrid electro-optical model. We found that the time of the surface electrical activation (tE) within the accuracy of our simulations coincided with the maximal slope of the optical upstroke (tF∗) for a broad range of optical attenuation lengths. This was not the case when the activation time was determined at 50% amplitude (tF50) of the optical upstroke. The validation experiments were conducted in isolated Langendorff-perfused rat hearts and coronary-perfused pig left ventricles stained with either di-4-ANEPPS or the near-infrared dye di-4-ANBDQBS. We found that tF∗ was a more accurate measure of tE than was tF50 in all experimental settings tested (P = 0.0002). Using tF∗ instead of tF50 produced the most significant improvement in measurements of the conduction anisotropy and the transmural conduction time in pig ventricles. PMID:22225795

  15. Three-Dimensional Electron Optics Model Developed for Traveling-Wave Tubes

    NASA Technical Reports Server (NTRS)

    Kory, Carol L.

    2000-01-01

    A three-dimensional traveling-wave tube (TWT) electron beam optics model including periodic permanent magnet (PPM) focusing has been developed at the NASA Glenn Research Center at Lewis Field. This accurate model allows a TWT designer to develop a focusing structure while reducing the expensive and time-consuming task of building the TWT and hot-testing it (with the electron beam). In addition, the model allows, for the first time, an investigation of the effect on TWT operation of the important azimuthally asymmetric features of the focusing stack. The TWT is a vacuum device that amplifies signals by transferring energy from an electron beam to a radiofrequency (RF) signal. A critically important component is the focusing structure, which keeps the electron beam from diverging and intercepting the RF slow wave circuit. Such an interception can result in excessive circuit heating and decreased efficiency, whereas excessive growth in the beam diameter can lead to backward wave oscillations and premature saturation, indicating a serious reduction in tube performance. The most commonly used focusing structure is the PPM stack, which consists of a sequence of cylindrical iron pole pieces and opposite-polarity magnets. Typically, two-dimensional electron optics codes are used in the design of magnetic focusing devices. In general, these codes track the beam from the gun downstream by solving equations of motion for the electron beam in static-electric and magnetic fields in an azimuthally symmetric structure. Because these two-dimensional codes cannot adequately simulate a number of important effects, the simulation code MAFIA (solution of Maxwell's equations by the Finite-Integration-Algorithm) was used at Glenn to develop a three-dimensional electron optics model. First, a PPM stack was modeled in three dimensions. Then, the fields obtained using the magnetostatic solver were loaded into a particle-in-cell solver where the fully three-dimensional behavior of the beam

  16. Three-Dimensional High-Resolution Optical/X-Ray Stereoscopic Tracking Velocimetry

    NASA Technical Reports Server (NTRS)

    Cha, Soyoung S.; Ramachandran, Narayanan

    2004-01-01

    Measurement of three-dimensional (3-D) three-component velocity fields is of great importance in a variety of research and industrial applications for understanding materials processing, fluid physics, and strain/displacement measurements. The 3-D experiments in these fields most likely inhibit the use of conventional techniques, which are based only on planar and optically-transparent-field observation. Here, we briefly review the current status of 3-D diagnostics for motion/velocity detection, for both optical and x-ray systems. As an initial step for providing 3-D capabilities, we nave developed stereoscopic tracking velocimetry (STV) to measure 3-D flow/deformation through optical observation. The STV is advantageous in system simplicity, for continually observing 3- D phenomena in near real-time. In an effort to enhance the data processing through automation and to avoid the confusion in tracking numerous markers or particles, artificial neural networks are employed to incorporate human intelligence. Our initial optical investigations have proven the STV to be a very viable candidate for reliably measuring 3-D flow motions. With previous activities are focused on improving the processing efficiency, overall accuracy, and automation based on the optical system, the current efforts is directed to the concurrent expansion to the x-ray system for broader experimental applications.

  17. Three-Dimensional High-Resolution Optical/X-Ray Stereoscopic Tracking Velocimetry

    NASA Technical Reports Server (NTRS)

    Cha, Soyoung S.; Ramachandran, Naryanan

    2005-01-01

    Measurement of three-dimensional (3-D) three-component velocity fields is of great importance in a variety of research and industrial applications for understanding materials processing, fluid physics, and strain/displacement measurements. The 3-D experiments in these fields most likely inhibit the use of conventional techniques, which are based only on planar and optically-transparent-field observation. Here, we briefly review the current status of 3-D diagnostics for motion/velocity detection, for both optical and x-ray systems. As an initial step for providing 3-D capabilities, we have developed stereoscopic tracking velocimetry (STV) to measure 3-D flow/deformation through optical observation. The STV is advantageous in system simplicity, for continually observing 3-D phenomena in near real-time. In an effort to enhance the data processing through automation and to avoid the confusion in tracking numerous markers or particles, artificial neural networks are employed to incorporate human intelligence. Our initial optical investigations have proven the STV to be a very viable candidate for reliably measuring 3-D flow motions. With previous activities focused on improving the processing efficiency, overall accuracy, and automation based on the optical system, the current efforts is directed to the concurrent expansion to the x-ray system for broader experimental applications.

  18. Three-dimensional spectral domain optical coherence tomography in chronic exposure to welding arc

    PubMed Central

    Saxena, Sandeep; Mishra, Nibha; Meyer, Carsten H

    2014-01-01

    Three-dimensional spectral domain optical coherence tomography was performed in a 26-year-old man with chronic exposure to welding arc. Advanced macular visualisation provided significant findings of inner segment-ellipsoid zone disruption with the presence of cystoid changes and hyper-reflective material in the area of disruption. The external limiting membrane was intact in both the eyes. C-scan retinal pigment epithelium fit map of the left eye revealed a well-delineated defect whereas the right eye showed a poorly delineated smaller defect. The hyper-reflective material can be hypothesised to originate from the disrupted photoreceptor layer. The hyper-reflective material was more evident in the left eye which could be correlated with more marked diminution of vision and a prominent yellow lesion at the fovea. PMID:24832707

  19. Three-dimensional optical memory using photoluminescence change in Sm-doped sodium borate glass

    SciTech Connect

    Lim, Jinhyong; Lee, Myeongkyu; Kim, Eunkyoung

    2005-05-09

    The feasibility of three-dimensional (3D) optical memory has been demonstrated by utilizing the photoluminescence (PL) spectrum change in a Sm-doped fluoride glass [K. Miura, J. Qiu, S. Fujiwara, S. Sakasuchi, and K. Hirao, Appl. Phys. Lett. 80 2263 (2002)]. We here report on a femtosecond laser-induced PL change in a Sm-doped sodium borate glass that is easier to synthesize and its potential application to 3D memory. Irradiation with a femtosecond pulsed laser (800 nm, 1 kHz, 100 fs) induced a PL peak near 682 nm, resulting from the photoreduction of the Sm ions. A multilayer pattern (bit size=1 {mu}m,layer separation=8 {mu}m) formed by femtosecond laser irradiation was read out by a reflection-type fluorescent confocal microscope, which detected the emission at 682 nm as a signal. High-contrast pattern images were obtained without crosstalk.

  20. Simulation of radiation effects on three-dimensional computer optical memories

    SciTech Connect

    Moscovitch, M.; Emfietzoglou, D.

    1997-01-01

    A model was developed to simulate the effects of heavy charged-particle (HCP) radiation on the information stored in three-dimensional computer optical memories. The model is based on (i) the HCP track radial dose distribution, (ii) the spatial and temporal distribution of temperature in the track, (iii) the matrix-specific radiation-induced changes that will affect the response, and (iv) the kinetics of transition of photochromic molecules from the colored to the colorless isomeric form (bit flip). It is shown that information stored in a volume of several nanometers radius around the particle{close_quote}s track axis may be lost. The magnitude of the effect is dependent on the particle{close_quote}s track structure. {copyright} {ital 1997 American Institute of Physics.}

  1. Simulation of radiation effects on three-dimensional computer optical memories

    NASA Technical Reports Server (NTRS)

    Moscovitch, M.; Emfietzoglou, D.

    1997-01-01

    A model was developed to simulate the effects of heavy charged-particle (HCP) radiation on the information stored in three-dimensional computer optical memories. The model is based on (i) the HCP track radial dose distribution, (ii) the spatial and temporal distribution of temperature in the track, (iii) the matrix-specific radiation-induced changes that will affect the response, and (iv) the kinetics of transition of photochromic molecules from the colored to the colorless isomeric form (bit flip). It is shown that information stored in a volume of several nanometers radius around the particle's track axis may be lost. The magnitude of the effect is dependent on the particle's track structure.

  2. Three-dimensional optical lattice clock with bosonic {sup 88}Sr atoms

    SciTech Connect

    Akatsuka, Tomoya; Takamoto, Masao; Katori, Hidetoshi

    2010-02-15

    We present detailed analyses of our recent experiment on the three-dimensional (3D) optical lattice clock with bosonic {sup 88}Sr atoms in which the collisional frequency shift was suppressed by applying a single-occupancy lattice. Frequency shifts in magnetically induced spectroscopy on the {sup 1}S{sub 0}-{sup 3}P{sub 0} clock transition ({lambda}=698 nm) of {sup 88}Sr were experimentally investigated by referencing a one-dimensional (1D) lattice clock based on spin-polarized {sup 87}Sr atoms. We discuss that the clock stability is limited by the current laser stability as well as the experimental sequence of the clock operation, which may be improved to {sigma}{sub y}({tau})=2x10{sup -16}/{radical}({tau}) by optimizing the cycle time of the clock operation.

  3. Three dimensional time lapse imaging of live cell mitochondria with photothermal optical lock-in optical coherence microscopy (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Sison, Miguel; Chakrabortty, Sabyasachi; Extermann, Jerome; Nahas, Amir; Pache, Christophe; Weil, Tanja; Lasser, Theo

    2016-03-01

    The photothermal optical lock-in optical coherence microscope (poli-OCM) introduced molecular specificity to OCM imaging, which is conventionally, a label-free technique. Here we achieve three-dimensional live cell and mitochondria specific imaging using ~4nm protein-functionalized gold nanoparticles (AuNPs). These nanoparticles do not photobleach and we demonstrate they're suitability for long-term time lapse imaging. We compare the accuracy of labelling with these AuNPs using classical fluorescence confocal imaging with a standard mitochondria specific marker. Furthermore, time lapse poli-OCM imaging every 5 minutes over 1.5 hours period was achieved, revealing the ability for three-dimensional monitoring of mitochondria dynamics.

  4. Mapping retinal thickness and macular edema by high-speed three-dimensional optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Zhou, Qienyuan; Trost, Peter K.; Lo, Pak-Wai; Hitzenberger, Christoph K.

    2004-07-01

    Conventional OCT generates one or few cross-sections of the retina and requires predetermination of measurement location and geometry. Because retinal pathologies are usually irregular and 3-dimensional in nature, a retinal imaging device with both high depth resolution and high lateral resolution is desired. The lateral resolution of the conventional OCT system is limited by sampling density, which in turn is limited by the speed of the system. In this paper, we present a three-dimensional optical coherence retinal tomograph (3D-OCT) which combines the rapid transversal imaging mode of a confocal scanning laser ophthalmoscope (cSLO) with the depth resolution of optical coherence tomography (OCT) to achieve high speed 3-D imaging. In contrary to the conventional OCT which performs adjacent A-scans to form a cross-section image (B-scan) perpendicular to the retinal surface, 3D-OCT acquires section images (C-scan) parallel to the retinal surface at defined depths across the thickness of the retina. Three-dimensional distribution of light-remitting sites within the retina is recorded at a depth resolution of ~12 μm (in eye) and lateral resolution of 10μm x 20μm within 1.2 seconds. In this paper, we present the results of in vivo retinal imaging of healthy volunteers and diabetic patients, retinal thickness mapping, and macular edema detection with the 3D-OCT device. Reproducibility of retinal thickness mapping ranges from 16 μm ~ 35 μm for different study subjects. Detailed retinal thickness map allows ready identification of location and area of macular thickening. C-scan images and continuous longitudinal cross section images provide visualization of pathological changes in the retina, such as presence of cyst formation and hard exudates. The need to predetermine measurement location and geometry is eliminated in 3D-OCT, in contrast to conventional OCT.

  5. Three dimensional fabrication of optical waveguiding elements for on-chip integration

    NASA Astrophysics Data System (ADS)

    Parsi Sreenivas, V. V.; Bülters, M.; Schröder, M.; Bergmann, R. B.

    2014-05-01

    We present micro polymer optical waveguide elements fabricated using femtosecond laser and two-photon absorption (TPA) process. The POWs are constructed by tightly focusing a laser beam in SU-8 based resists transparent to the laser wavelength for single-photon absorption. The TPA process enables the patterning of the resist in three dimensions at a resolution of 100-200 nm, which provides a high degree of freedom for POW designs. Using this technology, we provide a novel approach to fabricate Three dimensional Polymer Optical Waveguides (3D-POW) and coupling with single mode fibers in the visible wavelength regions. Our research is also focused on fabricating passive micro optical elements such as splitters, combiners and simple logical gates. For this reason we are aiming to achieve optimum coupling efficiency between the 3D-POW and fibers. The technology also facilitates 3D-POW fabrication independent of the substrate material. We present these fabrication techniques and designs, along with supporting numerical simulations and its transmission properties. With a length of 270 μm and polymer core diameter of 9 μm with air cladding, the waveguides possess a total loss of 12 dB. This value also includes the external in and out mode coupling and in continuously being improved upon by design optimization and simulations. We verify the overall feasibility of the design and coupling mechanisms that can be exploited to execute waveguide based optical functions such as filtering and logical operations.

  6. Three-dimensional two-photon laser fabrication for metals, polymers, and magneto-optical materials

    NASA Astrophysics Data System (ADS)

    Tanaka, Takuo; Ishikawa, Atsushi; Amemiya, Tomohiro

    2015-03-01

    The three-dimensional (3D) two-photon laser fabrication techniques for metal, polymer, and magneto-optical structures are presented. Two-photon-induced reduction of metal complex ions was developed to create 3D metal micro/nano structures. Owing to the inhibition of unwanted growth of metal nano crystals using surfactant molecules, we have successfully improved the spatial resolution of fabricated metal structures down to 100 nm in linewidth. Arbitrary shaped 3D silver structures with high electric conductivity were fabricated. Two-photon-induced photopolymerization technique has been applied for the photonic wire bonding. We have demonstrated the optical interconnection of III-V based DFB lasers and photo detectors by polymer wires with optical coupling loss less than 0.3dB. We also applied two-photon laser irradiation technique for the modification of the magnetic properties of cerium-substituted yttrium iron garnet crystal (CexY3-xFe5O12: Ce:YIG). A Ce:YIG layer was epitaxially-grown on a monomagnetic garnet (<111>-SGGG) substrate. 3D fs laser scanning in the Ce:YIG layer creates the micrometer patterns of both refractive index and magnetic properties change of the crystal. We demonstrated the micro/nanometer scale patterning of both optical and magnetic properties in the Ce:YIG crystal.

  7. All-optical dynamical Casimir effect in a three-dimensional terahertz photonic band gap

    NASA Astrophysics Data System (ADS)

    Hagenmüller, David

    2016-06-01

    We identify an architecture for the observation of all-optical dynamical Casimir effect in realistic experimental conditions. We suggest that by integrating quantum wells in a three-dimensional (3D) photonic band-gap material made out of large-scale (˜200 -μ m ) germanium logs, it is possible to achieve ultrastrong light-matter coupling at terahertz frequencies for the cyclotron transition of a two-dimensional electron gas interacting with long-lived optical modes, in which vacuum Rabi splitting is comparable to the Landau level spacing. When a short, intense electromagnetic transient of duration ˜250 fs and carrying a peak magnetic field ˜5 T is applied to the structure, the cyclotron transition can be suddenly tuned on resonance with a desired photon mode, switching on the light-matter interaction and leading to a Casimir radiation emitted parallel to the quantum well plane. The radiation spectrum consists of sharp peaks with frequencies coinciding with engineered optical modes within the 3D photonic band gap, and its characteristics are extremely robust to the nonradiative damping which can be large in our system. Furthermore, the absence of continuum with associated low-energy excitations for both electromagnetic and electronic quantum states can prevent the rapid absorption of the photon flux which is likely to occur in other proposals for all-optical dynamical Casimir effect.

  8. Spatial correlations and optical properties in three-dimensional deterministic aperiodic structures

    PubMed Central

    Renner, Michael; Freymann, Georg von

    2015-01-01

    Photonic systems have strongly varying optical properties depending on the spatial correlations present in a given realization. In photonic crystals the correlations are spatially periodic forming Bravais lattices whereas the building blocks of an amorphous medium are randomly distributed without any long-range order. In this manuscript we study the optical properties of so-called deterministic aperiodic structures which fill the gap between the aforementioned two limiting cases. Within this group we vary the spectrum of the spatial correlations from being pure-point over singularly-continuous to absolutely-continuous. The desired correlations are created in direct-laser written three-dimensional polymer structures using one construction principle which allows us to attribute the optical behaviour solely to the encoded spectrum. Infrared reflection measurements reveal the characteristic response of each spectral type verifying the successful fabrication of large deterministic aperiodic structures. To prove the presence of the correlations in all directions we perform transmission experiments parallel to the substrate by means of micro-optical mirrors placed next to the structures. Transport measurements reveal a strong dependence of the effective beam width at the output facet on the encoded lattice type. Finally, we reproduce the lattice type dependent transport behavior in numerical calculations ruling out extrinsic experimental reasons for these findings. PMID:26268153

  9. Three-dimensional diffuse optical tomography with full multi-view time-domain data

    NASA Astrophysics Data System (ADS)

    Bouza Domınguez, Jorge; Bérubé-Lauzière, Yves

    2013-03-01

    In this work, synthetic time-domain data are generated as if it were collected with a state-of-the-art multi-view experimental optical scanner developed in our group for small animal imaging, and used in a tomographic image reconstruction algorithm. The collected data comprises full time-dependent optical signals leaving the biological medium and acquired all around the medium. The diffuse optical tomography (DOT) algorithm relies on the time dependent parabolic simplified spherical harmonics (TD-pSPN) equations as the forward model to recover the 3D absorption and diffusion coefficient maps of the medium. The inverse problem is casted and solved as an iterative constrained optimization problem where an objective function determines the accuracy of the forward model predictions at each iteration. Time-dependent adjoint variables are introduced to accelerate the calculation of the gradient of the objective function. A three-dimensional case involving an absorption heterogeneity in a homogeneous medium is presented, reproducing practical situations encountered in our lab. The results support our hypothesis that accurate quantitative 3D maps of optical properties of biological tissues can be retrieved using intrinsic measurements obtained with our experimental scanner along with our DOT algorithm.

  10. Potential-based methodology for active sound control in three dimensional settings.

    PubMed

    Lim, H; Utyuzhnikov, S V; Lam, Y W; Kelly, L

    2014-09-01

    This paper extends a potential-based approach to active noise shielding with preservation of wanted sound in three-dimensional settings. The approach, which was described in a previous publication [Lim et al., J. Acoust. Soc. Am. 129(2), 717-725 (2011)], provides several significant advantages over conventional noise control methods. Most significantly, the methodology does not require any information including the characterization of sources, impedance boundary conditions and surrounding medium, and that the methodology automatically differentiates between the wanted and unwanted sound components. The previous publication proved the concept in one-dimensional conditions. In this paper, the approach for more realistic conditions is studied by numerical simulation and experimental validation in three-dimensional cases. The results provide a guideline to the implementation of the active shielding method with practical three-dimensional conditions. Through numerical simulation it is demonstrated that while leaving the wanted sound unchanged, the developed approach offers selective volumetric noise cancellation within a targeted domain. In addition, the method is implemented in a three-dimensional experiment with a white noise source in a semi-anechoic chamber. The experimental study identifies practical difficulties and limitations in the use of the approach for real applications. PMID:25190385

  11. Responses of Ventral Posterior Thalamus Neurons to Three-Dimensional Vestibular and Optic Flow Stimulation

    PubMed Central

    Meng, Hui

    2010-01-01

    Multisensory neurons tuned to both vestibular and visual motion (optic flow) signals are found in several cortical areas in the dorsal visual stream. Here we examine whether such convergence occurs subcortically in the macaque thalamus. We searched the ventral posterior nuclei, including the anterior pulvinar, as well as the ventro-lateral and ventral posterior lateral nuclei, areas that receive vestibular signals from brain stem and deep cerebellar nuclei. Approximately a quarter of cells responded to three-dimensional (3D) translational and/or rotational motion. More than half of the responsive cells were convergent, thus responded during both rotation and translation. The preferred axes of translation/rotation were distributed throughout 3D space. The majority of the neurons were excited, but some were inhibited, during rotation/translation in darkness. Only a couple of neurons were multisensory being tuned to both vestibular and optic flow stimuli. We conclude that multisensory vestibular/optic flow neurons, which are commonly found in cortical visual and visuomotor areas, are rare in the ventral posterior thalamus. PMID:19955294

  12. Three-dimensional surface reconstruction and panoramic optical mapping of large hearts.

    PubMed

    Kay, Matthew W; Amison, Philip M; Rogers, Jack M

    2004-07-01

    Optical mapping of electrical activity from the surface of the heart is a powerful tool for studying complex arrhythmias. However, a limitation of traditional optical mapping is that the mapped region is restricted to the field of view of the sensor, which makes it difficult to track electrical waves as they drift in and out of view. To address this, we developed an optical system that panoramically maps epicardial electrical activity in three dimensions. The system was engineered to accomodate hearts comparable in size to human hearts. It is comprised of a surface scanner that measures epicardial geometry and a panoramic fluorescence imaging system that records electrical activity. Custom software texture maps the electrical data onto a reconstructed epicardial surface. The result is a high resolution, spatially contiguous, mapping dataset. In addition, the three-dimensional positions of the recording sites are known, making it possible to accurately measure parameters that require geometric information, such as propagation velocity. In this paper, we describe the system and demonstrate it by mapping a swine heart. PMID:15248538

  13. Hadron Optics in Three-Dimensional Invariant Coordinate Space from Deeply VirtualCompton Scattering

    SciTech Connect

    Brodsky, S.J.; Chakrabarti, D.; Harindranath, A.; Mukherjee, A.; Vary, J.P.

    2006-11-30

    The Fourier transform of the deeply virtual Compton scattering amplitude (DVCS) with respect to the skewness parameter {zeta} = Q{sup 2}/2p {center_dot} q can be used to provide an image of the target hadron in the boost-invariant variable {sigma}, the coordinate conjugate to light-front time {tau} = t + z/c. As an illustration, we construct a consistent covariant model of the DVCS amplitude and its associated generalized parton distributions using the quantum fluctuations of a fermion state at one loop in QED, thus providing a representation of the light-front wave functions of a lepton in {sigma} space. A consistent model for hadronic amplitudes can then be obtained by differentiating the light-front wave functions with respect to the bound-state mass. The resulting DVCS helicity amplitudes are evaluated as a function of {sigma} and the impact parameter {rvec b}{sub {perpendicular}}, thus providing a light-front image of the target hadron in a frame-independent three-dimensional light-front coordinate space. Models for the LFWFs of hadrons in (3 + 1) dimensions displaying confinement at large distances and conformal symmetry at short distances have been obtained using the AdS/CFT method. We also compute the LFWFs in this model in invariant three dimensional coordinate space. We find that in the models studied, the Fourier transform of the DVCS amplitudes exhibit diffraction patterns. The results are analogous to the diffractive scattering of a wave in optics where the distribution in ? measures the physical size of the scattering center in a one-dimensional system.

  14. Three-dimensional patterning of multiple cell populations through orthogonal genetic control of cell motility

    PubMed Central

    MacKay, Joanna L.; Sood, Anshum

    2013-01-01

    The ability to independently assemble multiple cell types within a three-dimensional matrix would be a powerful enabling tool for modeling and engineering complex tissues. Here we introduce a strategy to dynamically pattern distinct subpopulations of cells through genetic regulation of cell motility. We first describe glioma cell lines that were genetically engineered to stably express constitutively active or dominant negative Rac1 GTPase mutants under the control of either a doxycycline-inducible or cumate-inducible promoter. We culture each population as multicellular spheroids and show that by adding or withdrawing the appropriate inducer at specific times, we can control the timing and extent of Rac1-dependent cell migration into three-dimensional collagen matrices. We then report results with mixed spheroids in which one subpopulation of cells expresses dominant negative Rac1 under a doxycycline-inducible promoter and the other expresses dominant negative Rac1 under a cumate-inducible promoter. Using this system, we demonstrate that doxycycline and cumate addition suppress Rac1-dependent motility in a subpopulation-specific and temporally-controlled manner. This allows us to orthogonally control the motility of each subpopulation and spatially assemble the cells into radially symmetric three-dimensional patterns through the synchronized addition and removal of doxycycline and cumate. This synthetic biology-inspired strategy offers a novel means of spatially organizing multiple cell populations in conventional matrix scaffolds and complements the emerging suite of technologies that seek to pattern cells by engineering extracellular matrix properties. PMID:24622945

  15. Optical clearing of unsectioned specimens for three-dimensional imaging via optical transmission and emission tomography

    PubMed Central

    Oldham, Mark; Sakhalkar, Harshad; Oliver, Tim; Johnson, G. Allan; Dewhirst, Mark

    2009-01-01

    Optical computed tomography (optical-CT) and optical emission computed tomography (optical-ECT) are new techniques that enable unprecedented high-resolution 3-D multimodal imaging of tissue structure and function. Applications include imaging macroscopic gene expression and microvasculature structure in unsectioned biological specimens up to 8 cm3. A key requisite for these imaging techniques is effective sample preparation including optical clearing, which enables light transport through the sample while preserving the signal (either light absorbing stain or fluorescent proteins) in representative form. We review recent developments in optical-CT and optical-ECT, and compatible “fluorescence-friendly” optical clearing protocols. PMID:18465962

  16. High-resolution three-dimensional in vivo imaging of mouse oviduct using optical coherence tomography

    PubMed Central

    Burton, Jason C.; Wang, Shang; Stewart, C. Allison; Behringer, Richard R.; Larina, Irina V.

    2015-01-01

    The understanding of the reproductive events and the molecular mechanisms regulating fertility and infertility in humans relies heavily on the analysis of the corresponding phenotypes in mouse models. While molecular genetic approaches provide significant insight into the molecular regulation of these processes, the lack of live imaging methods that allow for detailed visualization of the mouse reproductive organs limits our investigations of dynamic events taking place during the ovulation, the fertilization and the pre-implantation stages of embryonic development. Here we introduce an in vivo three-dimensional imaging approach for visualizing the mouse oviduct and reproductive events with micro-scale spatial resolution using optical coherence tomography (OCT). This method relies on the natural tissue optical contrast and does not require the application of any contrast agents. For the first time, we present live high-resolution images of the internal structural features of the oviduct, as well as other reproductive organs and the oocytes surrounded by cumulus cells. These results provide the basis for a wide range of live dynamic studies focused on understanding fertility and infertility. PMID:26203393

  17. Nonlinear optical microscopy reveals invading endothelial cells anisotropically alter three-dimensional collagen matrices

    SciTech Connect

    Lee, P.-F.; Yeh, Alvin T.; Bayless, Kayla J.

    2009-02-01

    The interactions between endothelial cells (ECs) and the extracellular matrix (ECM) are fundamental in mediating various steps of angiogenesis, including cell adhesion, migration and sprout formation. Here, we used a noninvasive and non-destructive nonlinear optical microscopy (NLOM) technique to optically image endothelial sprouting morphogenesis in three-dimensional (3D) collagen matrices. We simultaneously captured signals from collagen fibers and endothelial cells using second harmonic generation (SHG) and two-photon excited fluorescence (TPF), respectively. Dynamic 3D imaging revealed EC interactions with collagen fibers along with quantifiable alterations in collagen matrix density elicited by EC movement through and morphogenesis within the matrix. Specifically, we observed increased collagen density in the area between bifurcation points of sprouting structures and anisotropic increases in collagen density around the perimeter of lumenal structures, but not advancing sprout tips. Proteinase inhibition studies revealed membrane-associated matrix metalloproteinase were utilized for sprout advancement and lumen expansion. Rho-associated kinase (p160ROCK) inhibition demonstrated that the generation of cell tension increased collagen matrix alterations. This study followed sprouting ECs within a 3D matrix and revealed that the advancing structures recognize and significantly alter their extracellular environment at the periphery of lumens as they progress.

  18. Three-dimensional, distendable bladder phantom for optical coherence tomography and white light cystoscopy

    PubMed Central

    Lurie, Kristen L.; Smith, Gennifer T.; Khan, Saara A.; Liao, Joseph C.; Ellerbee, Audrey K.

    2014-01-01

    Abstract. We describe a combination of fabrication techniques and a general process to construct a three-dimensional (3-D) phantom that mimics the size, macroscale structure, microscale surface topology, subsurface microstructure, optical properties, and functional characteristics of a cancerous bladder. The phantom also includes features that are recognizable in white light (i.e., the visual appearance of blood vessels), making it suitable to emulate the bladder for emerging white light+optical coherence tomography (OCT) cystoscopies and other endoscopic procedures of large, irregularly shaped organs. The fabrication process has broad applicability and can be generalized to OCT phantoms for other tissue types or phantoms for other imaging modalities. To this end, we also enumerate the nuances of applying known fabrication techniques (e.g., spin coating) to contexts (e.g., nonplanar, 3-D shapes) that are essential to establish their generalizability and limitations. We anticipate that this phantom will be immediately useful to evaluate innovative OCT systems and software being developed for longitudinal bladder surveillance and early cancer detection. PMID:24623158

  19. FFLO order in ultra-cold atoms in three-dimensional optical lattices

    NASA Astrophysics Data System (ADS)

    Rosenberg, Peter; Chiesa, Simone; Zhang, Shiwei

    2015-06-01

    We investigate different ground-state phases of attractive spin-imbalanced populations of fermions in three-dimensional optical lattices. Detailed numerical calculations are performed using Hartree-Fock-Bogoliubov theory to determine the ground-state properties systematically for different values of density, spin polarization and interaction strength. We first consider the high density and low polarization regime, in which the effect of the optical lattice is most evident. We then proceed to the low density and high polarization regime where the effects of the underlying lattice are less significant and the system begins to resemble a continuum Fermi gas. We explore the effects of density, polarization and interaction on the character of the phases in each regime and highlight the qualitative differences between the two regimes. In the high-density regime, the order is found to be of Larkin-Ovchinnikov type, linearly oriented with one characteristic wave vector but varying in its direction with the parameters. At lower densities the order parameter develops more structures involving multiple wave vectors.

  20. Three-dimensional imaging of artificial fingerprint by optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Larin, Kirill V.; Cheng, Yezeng

    2008-03-01

    Fingerprint recognition is one of the popular used methods of biometrics. However, due to the surface topography limitation, fingerprint recognition scanners are easily been spoofed, e.g. using artificial fingerprint dummies. Thus, biometric fingerprint identification devices need to be more accurate and secure to deal with different fraudulent methods including dummy fingerprints. Previously, we demonstrated that Optical Coherence Tomography (OCT) images revealed the presence of the artificial fingerprints (made from different household materials, such as cement and liquid silicone rubber) at all times, while the artificial fingerprints easily spoofed the commercial fingerprint reader. Also we demonstrated that an analysis of the autocorrelation of the OCT images could be used in automatic recognition systems. Here, we exploited the three-dimensional (3D) imaging of the artificial fingerprint by OCT to generate vivid 3D image for both the artificial fingerprint layer and the real fingerprint layer beneath. With the reconstructed 3D image, it could not only point out whether there exists an artificial material, which is intended to spoof the scanner, above the real finger, but also could provide the hacker's fingerprint. The results of these studies suggested that Optical Coherence Tomography could be a powerful real-time noninvasive method for accurate identification of artificial fingerprints real fingerprints as well.

  1. Enhanced photocurrent in thin-film amorphous silicon solar cells via shape controlled three-dimensional nanostructures

    NASA Astrophysics Data System (ADS)

    Hilali, Mohamed M.; Yang, Shuqiang; Miller, Mike; Xu, Frank; Banerjee, Sanjay; Sreenivasan, S. V.

    2012-10-01

    In this paper, we have explored manufacturable approaches to sub-wavelength controlled three-dimensional (3D) nano-patterns with the goal of significantly enhancing the photocurrent in amorphous silicon solar cells. Here we demonstrate efficiency enhancement of about 50% over typical flat a-Si thin-film solar cells, and report an enhancement of 20% in optical absorption over Asahi textured glass by fabricating sub-wavelength nano-patterned a-Si on glass substrates. External quantum efficiency showed superior results for the 3D nano-patterned thin-film solar cells due to enhancement of broadband optical absorption. The results further indicate that this enhanced light trapping is achieved with minimal parasitic absorption losses in the deposited transparent conductive oxide for the nano-patterned substrate thin-film amorphous silicon solar cell configuration. Optical simulations are in good agreement with experimental results, and also show a significant enhancement in optical absorption, quantum efficiency and photocurrent.

  2. Scalable two- and three-dimensional optical labels generated by 128-port encoder/decoder for optical packet switching.

    PubMed

    Matsumoto, Ryosuke; Kodama, Takahiro; Morita, Koji; Wada, Naoya; Kitayama, Ken-ichi

    2015-10-01

    This paper deals with massive number of optical code (OC) label generation and recognition for scalable optical packet switching (OPS) networks. In order to expand the system scalability of code label processing, we develop a record port count 128 x 128 optical encoder/decoder (E/D) and propose a novel three-dimensional (3-D) optical label combining code label with wavelength and polarization. In the experiment, we conduct a proof-of-concept demonstration of 4-code x 2-wavelength x 2-polarization and validate that the 3-D labeling scheme can consequently increase the available number of code label up to more than 1,000 labels. Real-time labeling performance using a field programmable gate array (FPGA)-based processor and crosstalk influence at an optical switch are also experimentally evaluated. PMID:26480089

  3. Structural- and optical-property characterization of three-dimensional branched ZnO nanospikes

    SciTech Connect

    Chia, M.Y.; Chiu, W.S.; Daud, S.N.H.; Khiew, P.S.; Radiman, S.; Abd-Shukor, R.; Hamid, M.A.A.

    2015-08-15

    Current study reports the synthesis of three-dimensional (3-D) ZnO nanospikes with anomalous optical property, where zinc stearate is adopted as a safe, common and low-cost precursor that undergoes thermal pyrolysis under non-hydrolytic approach. High resolution transmission electron microscope (HRTEM) and scanning electron microscope (SEM) result show that the as-synthesized 3-D ZnO nanospikes are constructed by bundle of nanorods that sprout radially outwards in random orientation. The possible growth mechanism is discussed by referring to the microscopy results. X-ray diffraction (XRD) pattern confirms that the nanospikes are highly crystalline, which existed in hexagonal wurtzite crystal structure. Optical absorption characterization shows that the onset absorption for the nanospikes is slightly red-shifted if compared to commercial ZnO and the corresponding bandgap energy is estimated to be 3.1 eV. The photoluminescene (PL) result of ZnO nanospikes indicate that its optical emission exhibits weak UV emission but very intense visible-light emission that ranged from green- up to red-region. The factors that contributed to the intriguing PL characteristic are discussed. Current finding would offer a versatile synthesis scheme in engineering advanced nanostructures with new design that exhibit congruent optical property. - Graphical abstract: Display Omitted - Highlights: • Pyrolysis of zinc stearate in synthesizing 3-D ZnO nanospikes • ZnO nanospikes possess bundle of nanorods that sprout out from the hexagonal stump • Growth mechanism is deduced to elucidate the morphological evolution from nanobullet to nanospike with branching topology • PL spectrum indicate that the nanospike exhibit prominent visible-light emission that ranged from green- to red-region.

  4. Bone tissue engineering therapeutics: controlled drug delivery in three-dimensional scaffolds

    PubMed Central

    Mouriño, Viviana; Boccaccini, Aldo R.

    2010-01-01

    This paper provides an extensive overview of published studies on the development and applications of three-dimensional bone tissue engineering (TE) scaffolds with potential capability for the controlled delivery of therapeutic drugs. Typical drugs considered include gentamicin and other antibiotics generally used to combat osteomyelitis, as well as anti-inflammatory drugs and bisphosphonates, but delivery of growth factors is not covered in this review. In each case reviewed, special attention has been given to the technology used for controlling the release of the loaded drugs. The possibility of designing multifunctional three-dimensional bone TE scaffolds for the emerging field of bone TE therapeutics is discussed. A detailed summary of drugs included in three-dimensional scaffolds and the several approaches developed to combine bioceramics with various polymeric biomaterials in composites for drug-delivery systems is included. The main results presented in the literature are discussed and the remaining challenges in the field are summarized with suggestions for future research directions. PMID:19864265

  5. Three-dimensional Segmentation of Retinal Cysts from Spectral-domain Optical Coherence Tomography Images by the Use of Three-dimensional Curvelet Based K-SVD.

    PubMed

    Esmaeili, Mahdad; Dehnavi, Alireza Mehri; Rabbani, Hossein; Hajizadeh, Fedra

    2016-01-01

    This paper presents a new three-dimensional curvelet transform based dictionary learning for automatic segmentation of intraretinal cysts, most relevant prognostic biomarker in neovascular age-related macular degeneration, from 3D spectral-domain optical coherence tomography (SD-OCT) images. In particular, we focus on the Spectralis SD-OCT (Heidelberg Engineering, Heidelberg, Germany) system, and show the applicability of our algorithm in the segmentation of these features. For this purpose, we use recursive Gaussian filter and approximate the corrupted pixels from its surrounding, then in order to enhance the cystoid dark space regions and future noise suppression we introduce a new scheme in dictionary learning and take curvelet transform of filtered image then denoise and modify each noisy coefficients matrix in each scale with predefined initial 3D sparse dictionary. Dark pixels between retinal pigment epithelium and nerve fiber layer that were extracted with graph theory are considered as cystoid spaces. The average dice coefficient for the segmentation of cystoid regions in whole 3D volume and with-in central 3 mm diameter on the MICCAI 2015 OPTIMA Cyst Segmentation Challenge dataset were found to be 0.65 and 0.77, respectively. PMID:27563573

  6. Three-dimensional Segmentation of Retinal Cysts from Spectral-domain Optical Coherence Tomography Images by the Use of Three-dimensional Curvelet Based K-SVD

    PubMed Central

    Esmaeili, Mahdad; Dehnavi, Alireza Mehri; Rabbani, Hossein; Hajizadeh, Fedra

    2016-01-01

    This paper presents a new three-dimensional curvelet transform based dictionary learning for automatic segmentation of intraretinal cysts, most relevant prognostic biomarker in neovascular age-related macular degeneration, from 3D spectral-domain optical coherence tomography (SD-OCT) images. In particular, we focus on the Spectralis SD-OCT (Heidelberg Engineering, Heidelberg, Germany) system, and show the applicability of our algorithm in the segmentation of these features. For this purpose, we use recursive Gaussian filter and approximate the corrupted pixels from its surrounding, then in order to enhance the cystoid dark space regions and future noise suppression we introduce a new scheme in dictionary learning and take curvelet transform of filtered image then denoise and modify each noisy coefficients matrix in each scale with predefined initial 3D sparse dictionary. Dark pixels between retinal pigment epithelium and nerve fiber layer that were extracted with graph theory are considered as cystoid spaces. The average dice coefficient for the segmentation of cystoid regions in whole 3D volume and with-in central 3 mm diameter on the MICCAI 2015 OPTIMA Cyst Segmentation Challenge dataset were found to be 0.65 and 0.77, respectively. PMID:27563573

  7. Three-dimensional planar-integrated optics: a comparative view with free-space optics

    NASA Astrophysics Data System (ADS)

    Lee, El-Hang; Song, Seok Ho

    2000-04-01

    This paper reports on the viability, effectiveness, versatility, and the utility of the concept of the planar integrated optical interconnection scheme with respect to the concept of the free-space interconnection scheme in realizing multiple integration of various micro/nano- photonic devices and components for applications in optical interconnection, optical circuits, optical switching, optical communication and information processing. Several planar optics schemes to detect parallel optical packet addresses in WDM switching networks, to perform a space- variant processing such as fractional correlation, and to construct multistage interconnection networks, have been successfully demonstrated in the 3D glass blocks. Using a gradient-index (GRIN) substrate as a signal propagation medium in the planar optics is a unique advantage, when compared to the free-space optics. We have demonstrated the GRIN-substrate concept by using six 1/4-pitch GRIN rod lenses and a vertical cavity surface emitting laser (VCSEL). The GRIN planar optics can be further extended to the use of 2D array of VCSEL microlasers and modulators in making massively parallel interconnects. A critical comparison between the planar integrated optics scheme and the free- space integrated scheme is given in terms of physics, engineering and technological concept.

  8. High-resolution imaging diagnosis of human fetal membrane by three-dimensional optical coherence tomography

    PubMed Central

    Ren, Hugang; Avila, Cecilia; Kaplan, Cynthia; Pan, Yingtian

    2011-01-01

    Microscopic chorionic pseudocyst (MCP) arising in the chorion leave of the human fetal membrane (FM) is a clinical precursor for preeclampsia which may progress to fatal medical conditions (e.g., abortion) if left untreated. To examine the utility of three-dimensional (3D) optical coherence tomography (OCT) for noninvasive delineation of the morphology of human fetal membranes and early clinical detection of MCP, 60 human FM specimens were acquired from 10 different subjects undergoing term cesarean delivery for an ex vivo feasibility study. Our results showed that OCT was able to identify the four-layer architectures of human FMs consisting of high-scattering decidua vera (DV, average thickness dDV ≈ 92±38 μm), low-scattering chorion and trophoblast (CT, dCT ≈ 150±67 μm), high-scattering subepithelial amnion (A, dA ≈ 95±36 μm), and low-scattering epithelium (E, dE ≈ 29±8 μm). Importantly, 3D OCT was able to instantaneously detect MCPs (low scattering due to edema, fluid buildup, vasodilatation) and track (staging) their thicknesses dMCP ranging from 24 to 615 μm. It was also shown that high-frequency ultrasound was able to compliment OCT for detecting more advanced thicker MCPs (e.g., dMCP>615 μm) because of its increased imaging depth. PMID:22112111

  9. Dirac and Weyl rings in three-dimensional cold-atom optical lattices

    NASA Astrophysics Data System (ADS)

    Xu, Yong; Zhang, Chuanwei

    2016-06-01

    Recently three-dimensional topological quantum materials with gapless energy spectra have attracted considerable interest in many branches of physics. Besides the celebrated example, Dirac and Weyl points which possess gapless point structures in the underlying energy dispersion, the topologically protected gapless spectrum, can also occur along a ring, named Dirac and Weyl nodal rings. Ultracold atomic gases provide an ideal platform for exploring new topological materials with designed symmetries and dispersion. However, whether Dirac and Weyl rings can exist in the single-particle spectrum of cold atoms remains elusive. Here we propose a realistic model for realizing Dirac and Weyl rings in the single-particle band dispersion of a cold-atom optical lattice. Our scheme is based on a previously experimentally implemented Raman coupling setup for realizing spin-orbit coupling. Without the Zeeman field, the model preserves both pseudo-time-reversal and inversion symmetries, allowing Dirac rings. The Dirac rings split into Weyl rings with a Zeeman field that breaks the pseudo-time-reversal symmetry. We examine the superfluidity of attractive Fermi gases in this model and also find Dirac and Weyl rings in the quasiparticle spectrum.

  10. Three-dimensional simultaneous optical coherence tomography and confocal fluorescence microscopy for investigation of lung tissue

    NASA Astrophysics Data System (ADS)

    Gaertner, Maria; Cimalla, Peter; Meissner, Sven; Kuebler, Wolfgang M.; Koch, Edmund

    2012-07-01

    Although several strategies exist for a minimal-invasive treatment of patients with lung failure, the mortality rate of acute respiratory distress syndrome still reaches 30% at minimum. This striking number indicates the necessity of understanding lung dynamics on an alveolar level. To investigate the dynamical behavior on a microscale, we used three-dimensional geometrical and functional imaging to observe tissue parameters including alveolar size and length of embedded elastic fibers during ventilation. We established a combined optical coherence tomography (OCT) and confocal fluorescence microscopy system that is able to monitor the distension of alveolar tissue and elastin fibers simultaneously within three dimensions. The OCT system can laterally resolve a 4.9 μm line pair feature and has an approximately 11 μm full-width-half-maximum axial resolution in air. confocal fluorescence microscopy visualizes molecular properties of the tissue with a resolution of 0.75 μm (laterally), and 5.9 μm (axially) via fluorescence detection of the dye sulforhodamine B specifically binding to elastin. For system evaluation, we used a mouse model in situ to perform lung distension by application of different constant pressure values within the physiological regime. Our method enables the investigation of alveolar dynamics by helping to reveal basic processes emerging during artificial ventilation and breathing.

  11. Live-cell multiplane three-dimensional super-resolution optical fluctuation imaging.

    PubMed

    Geissbuehler, Stefan; Sharipov, Azat; Godinat, Aurélien; Bocchio, Noelia L; Sandoz, Patrick A; Huss, Anja; Jensen, Nickels A; Jakobs, Stefan; Enderlein, Jörg; Gisou van der Goot, F; Dubikovskaya, Elena A; Lasser, Theo; Leutenegger, Marcel

    2014-01-01

    Super-resolution optical fluctuation imaging (SOFI) provides an elegant way of overcoming the diffraction limit in all three spatial dimensions by computing higher-order cumulants of image sequences of blinking fluorophores acquired with a classical widefield microscope. Previously, three-dimensional (3D) SOFI has been demonstrated by sequential imaging of multiple depth positions. Here we introduce a multiplexed imaging scheme for the simultaneous acquisition of multiple focal planes. Using 3D cross-cumulants, we show that the depth sampling can be increased. The simultaneous acquisition of multiple focal planes significantly reduces the acquisition time and thus the photobleaching. We demonstrate multiplane 3D SOFI by imaging fluorescently labelled cells over an imaged volume of up to 65 × 65 × 3.5 μm(3) without depth scanning. In particular, we image the 3D network of mitochondria in fixed C2C12 cells immunostained with Alexa 647 fluorophores and the 3D vimentin structure in living Hela cells expressing the fluorescent protein Dreiklang. PMID:25518894

  12. The characteristics of three-dimensional skin imaging system by full-colored optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Yang, Bor-Wen; Chan, Li-Ming; Wang, Kai-Cheng

    2009-05-01

    In the present cosmetic market, the skin image obtained from a hand-held camera is two-dimensional (2-D). Due to insufficient penetration, only the skin surface can be detected, and thus phenomena in the dermis cannot be observed. To take the place of the conventional 2D camera, a new hand-held imaging system is proposed for three-dimensional (3-D) skin imaging. Featuring non-invasiveness, optical coherence tomography (OCT) has become one of the popular medical imaging techniques. The dermal images shown in OCT-related reports were mainly single-colored because of the use of a monotonic light source. With three original-colored beams applied in OCT, a full-colored image can be derived for dermatology. The penetration depth of the system ranges from 0.43 to 0.78 mm, sufficient for imaging of main tissues in the dermis. Colorful and non-invasive perspectives of deep dermal structure help to advance skin science, dermatology and cosmetology.

  13. Loading and detecting a three-dimensional Fermi gas in a one-dimensional optical superlattice

    NASA Astrophysics Data System (ADS)

    Sheikhan, Ameneh; Kollath, Corinna

    2015-04-01

    We investigate the procedures of loading and detecting three-dimensional fermionic quantum gases in a one-dimensional optical superlattice potential subjected to a trapping potential. Additionally, we consider the relaxation dynamics after a sudden change of the superlattice potential. We numerically simulate the time-dependent evolution of the continuous system using exact diagonalization of noninteracting fermions. During the loading procedure we analyze the occupation of the instantaneous energy levels and compare the situation in a homogeneous system with the trapped one. Strong differences are found in particular in the evolution of excitations which we trace back to the distinct global density distribution. Starting from an imbalanced state in the superlattice potential, we consider the relaxation dynamics of fermions after a slow change of the superlattice potential and find a bimodal distribution of excitations. To be able to compare with the experimental results we also simulate the measurement sequence of the even and odd local density and find a strong dependence of the outcome on the actual ramp procedure. We suggest how the loading and detecting procedure can be optimized.

  14. Automated quantitative assessment of three-dimensional bioprinted hydrogel scaffolds using optical coherence tomography

    PubMed Central

    Wang, Ling; Xu, Mingen; Zhang, LieLie; Zhou, QingQing; Luo, Li

    2016-01-01

    Reconstructing and quantitatively assessing the internal architecture of opaque three-dimensional (3D) bioprinted hydrogel scaffolds is difficult but vital to the improvement of 3D bioprinting techniques and to the fabrication of functional engineered tissues. In this study, swept-source optical coherence tomography was applied to acquire high-resolution images of hydrogel scaffolds. Novel 3D gelatin/alginate hydrogel scaffolds with six different representative architectures were fabricated using our 3D bioprinting system. Both the scaffold material networks and the interconnected flow channel networks were reconstructed through volume rendering and binarisation processing to provide a 3D volumetric view. An image analysis algorithm was developed based on the automatic selection of the spatially-isolated region-of–interest. Via this algorithm, the spatially-resolved morphological parameters including pore size, pore shape, strut size, surface area, porosity, and interconnectivity were quantified precisely. Fabrication defects and differences between the designed and as-produced scaffolds were clearly identified in both 2D and 3D; the locations and dimensions of each of the fabrication defects were also defined. It concludes that this method will be a key tool for non-destructive and quantitative characterization, design optimisation and fabrication refinement of 3D bioprinted hydrogel scaffolds. Furthermore, this method enables investigation into the quantitative relationship between scaffold structure and biological outcome. PMID:27231597

  15. High-resolution imaging diagnosis of human fetal membrane by three-dimensional optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Ren, Hugang; Avila, Cecilia; Kaplan, Cynthia; Pan, Yingtian

    2011-11-01

    Microscopic chorionic pseudocyst (MCP) arising in the chorion leave of the human fetal membrane (FM) is a clinical precursor for preeclampsia which may progress to fatal medical conditions (e.g., abortion) if left untreated. To examine the utility of three-dimensional (3D) optical coherence tomography (OCT) for noninvasive delineation of the morphology of human fetal membranes and early clinical detection of MCP, 60 human FM specimens were acquired from 10 different subjects undergoing term cesarean delivery for an ex vivo feasibility study. Our results showed that OCT was able to identify the four-layer architectures of human FMs consisting of high-scattering decidua vera (DV, average thickness dDV ~ 92+/-38 μm), low-scattering chorion and trophoblast (CT, dCT ~ 150+/-67 μm), high-scattering subepithelial amnion (A, dA ~ 95+/-36 μm), and low-scattering epithelium (E, dE ~ 29+/-8 μm). Importantly, 3D OCT was able to instantaneously detect MCPs (low scattering due to edema, fluid buildup, vasodilatation) and track (staging) their thicknesses dMCP ranging from 24 to 615 μm. It was also shown that high-frequency ultrasound was able to compliment OCT for detecting more advanced thicker MCPs (e.g., dMCP>615 μm) because of its increased imaging depth.

  16. Three-dimensional motion tracking for high-resolution optical microscopy, in vivo.

    PubMed

    Bakalar, M; Schroeder, J L; Pursley, R; Pohida, T J; Glancy, B; Taylor, J; Chess, D; Kellman, P; Xue, H; Balaban, R S

    2012-06-01

    When conducting optical imaging experiments, in vivo, the signal to noise ratio and effective spatial and temporal resolution is fundamentally limited by physiological motion of the tissue. A three-dimensional (3D) motion tracking scheme, using a multiphoton excitation microscope with a resonant galvanometer, (512 × 512 pixels at 33 frames s(-1)) is described to overcome physiological motion, in vivo. The use of commercially available graphical processing units permitted the rapid 3D cross-correlation of sequential volumes to detect displacements and adjust tissue position to track motions in near real-time. Motion phantom tests maintained micron resolution with displacement velocities of up to 200 μm min(-1), well within the drift observed in many biological tissues under physiologically relevant conditions. In vivo experiments on mouse skeletal muscle using the capillary vasculature with luminal dye as a displacement reference revealed an effective and robust method of tracking tissue motion to enable (1) signal averaging over time without compromising resolution, and (2) tracking of cellular regions during a physiological perturbation. PMID:22582797

  17. Three-dimensional reconstructions from optical sections of thick mouse inner ears using confocal microscopy.

    PubMed

    Kopecky, B J; Duncan, J S; Elliott, K L; Fritzsch, B

    2012-12-01

    Three-dimensional (3D) reconstructions of the vertebrate inner ear have provided novel insights into the development of this complex organ. 3D reconstructions enable superior analysis of phenotypic differences between wild type and mutant ears but can result in laborious work when reconstructed from physically sectioned material. Although nondestructive optical sectioning light sheet microscopy may ultimately prove the ideal solution, these technologies are not yet commercially available, or in many instances are not monetarily feasible. Here we introduce a simple technique to image a fluorescently labelled ear at different stages throughout development at high resolution enabling 3D reconstruction of any component of the inner ear using confocal microscopy. We provide a step-by-step manual from tissue preparation to imaging to 3D reconstruction and analysis including a rationale and troubleshooting guide at each step for researchers with different equipment, protocols, and access to resources to successfully incorporate the principles of this method and customize them to their laboratory settings. PMID:23140378

  18. Three-dimensional imaging of the developing mouse female reproductive organs with optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Burton, Jason C.; Wang, Shang; Behringer, Richard R.; Larina, Irina V.

    2016-03-01

    Infertility is a known major health concern and is estimated to impact ~15% of couples in the U.S. The majority of failed pregnancies occur before or during implantation of the fertilized embryo into the uterus. Understanding the mechanisms regulating development by studying mouse reproductive organs could significantly contribute to an improved understanding of normal development of reproductive organs and developmental causes of infertility in humans. Towards this goal, we report a three-dimensional (3D) imaging study of the developing mouse reproductive organs (ovary, oviduct, and uterus) using optical coherence tomography (OCT). In our study, OCT was used for 3D imaging of reproductive organs without exogenous contrast agents and provides micro-scale spatial resolution. Experiments were conducted in vitro on mouse reproductive organs ranging from the embryonic day 14.5 to adult stages. Structural features of the ovary, oviduct, and uterus are presented. Additionally, a comparison with traditional histological analysis is illustrated. These results provide a basis for a wide range of infertility studies in mouse models. Through integration with traditional genetic and molecular biology approaches, this imaging method can improve understanding of ovary, oviduct, and uterus development and function, serving to further contribute to our understanding of fertility and infertility.

  19. Dirac and Weyl Rings in Three Dimensional Cold Atom Optical Lattices

    NASA Astrophysics Data System (ADS)

    Xu, Yong; Zhang, Chuanwei

    Recently three dimensional topological quantum materials with gapless energy spectra have attracted considerable interests in many branches of physics. Besides the celebrated example, Dirac and Weyl points which possess gapless point structures in the underlying energy dispersion, the topologically protected gapless spectrum can also occur along a ring, named Dirac and Weyl nodal rings. Ultra-cold atomic gases provide an ideal platform for exploring new topological materials with designed symmetries. However, whether Dirac and Weyl rings can exist in the single-particle spectrum of cold atoms remains elusive. Here we propose a realistic model for realizing Dirac and Weyl rings in the single-particle band dispersion of a cold atom optical lattice. Our scheme is based on previously experimentally already implemented Raman coupling setup for realizing spin-orbit coupling. Without the Zeeman field, the model preserves both pseudo-time-reversal and inversion symmetries, allowing Dirac rings. The Dirac rings split into Weyl rings with a Zeeman field that breaks the pseudo-time-reversal symmetry. We examine the superfluidity of attractive Fermi gases in this model and also find Dirac and Weyl rings in the quasiparticle spectrum.

  20. Automated quantitative assessment of three-dimensional bioprinted hydrogel scaffolds using optical coherence tomography.

    PubMed

    Wang, Ling; Xu, Mingen; Zhang, LieLie; Zhou, QingQing; Luo, Li

    2016-03-01

    Reconstructing and quantitatively assessing the internal architecture of opaque three-dimensional (3D) bioprinted hydrogel scaffolds is difficult but vital to the improvement of 3D bioprinting techniques and to the fabrication of functional engineered tissues. In this study, swept-source optical coherence tomography was applied to acquire high-resolution images of hydrogel scaffolds. Novel 3D gelatin/alginate hydrogel scaffolds with six different representative architectures were fabricated using our 3D bioprinting system. Both the scaffold material networks and the interconnected flow channel networks were reconstructed through volume rendering and binarisation processing to provide a 3D volumetric view. An image analysis algorithm was developed based on the automatic selection of the spatially-isolated region-of-interest. Via this algorithm, the spatially-resolved morphological parameters including pore size, pore shape, strut size, surface area, porosity, and interconnectivity were quantified precisely. Fabrication defects and differences between the designed and as-produced scaffolds were clearly identified in both 2D and 3D; the locations and dimensions of each of the fabrication defects were also defined. It concludes that this method will be a key tool for non-destructive and quantitative characterization, design optimisation and fabrication refinement of 3D bioprinted hydrogel scaffolds. Furthermore, this method enables investigation into the quantitative relationship between scaffold structure and biological outcome. PMID:27231597

  1. Hadron Optics in Three-Dimensional Invariant Coordinate Space from Deeply Virtual Compton Scattering

    SciTech Connect

    Brodsky, S J; Chakrabarti, D; Harindranath, A; Mukherjee, A; Vary, J P

    2006-11-10

    The Fourier transform of the deeply virtual Compton scattering amplitude (DVCS) with respect to the skewness parameter {zeta} = Q{sup 2}/2p {center_dot} q can be used to provide an image of the target hadron in the boost-invariant variable {sigma}, the coordinate conjugate to light-front time {tau} = t + z/c. As an illustration, we construct a consistent covariant model of the DVCS amplitude and its associated generalized parton distributions using the quantum fluctuations of a fermion state at one loop in QED, thus providing a representation of the light-front wavefunctions of a lepton in {sigma} space. A consistent model for hadronic amplitudes can then be obtained by differentiating the light-front wavefunctions with respect to the bound-state mass. The resulting DVCS helicity amplitudes are evaluated as a function of {sigma} and the impact parameter {rvec b}{sub {perpendicular}}, thus providing a light-front ''photograph'' of the target hadron in a frame-independent three-dimensional light-front coordinate space. We find that in the models studied, the Fourier transform of the DVCS amplitudes exhibit diffraction patterns. The results are analogous to the diffractive scattering of a wave in optics where the distribution in {sigma} measures the physical size of the scattering center in a one-dimensional system.

  2. The assessment of orthodontic bonding defects: optical coherence tomography followed by three-dimensional reconstruction

    NASA Astrophysics Data System (ADS)

    Rominu, R.; Sinescu, C.; Rominu, M.; Negrutiu, M.; Petrescu, E.; Pop, D.; Podoleanu, A. Gh.

    2011-10-01

    Orthodontic bonding is a simple yet important procedure that can influence the outcome of treatment in case it is performed incorrectly. An orthodontic treatment shadowed by repeated bonding failures can become unduly long and will decrease patient trust and compliance. Optical coherence tomography has been widely used in ophtalmology but is relatively new to dentistry. Using OCT one can detect aerial inclusions within the orthodontic adhesive or even identify incongruence between the bracket base and the tooth surface. The aim of our study was to identify bonding defects and reconstruct them three-dimensionally in order to be able to characterize them more accurately. We bonded 30 sound human permanent teeth with ceramic orthodontic brackets using a no-mix self-curing orthodontic adhesive. Prior to bonding all teeth were stored in tap water at 4°C and then professionally cleaned with rotary brushes and pumice. The samples were processed by the same person and the rotary brushes were changed after every fifth tooth. All interfaces were investigated by means of OCT and 4 defects were found. Subsequently, the defects were reconstructed threedimensionally using an open-source program. By identifying and reconstructing bonding defects we could assess the quality of the bonding procedure. Since bonding tends to be more accurate in vitro where the environmental conditions are close to ideal, it is probable that defects found in vivo be even greater in number, which leads to the conclusion that this type of investigation is potentially valuable.

  3. Real-time three-dimensional Fourier-domain optical coherence tomography video image guided microsurgeries

    PubMed Central

    Huang, Yong; Zhang, Kang; Ibrahim, Zuhaib; Cha, Jaepyeong; Lee, W. P. Andrew; Brandacher, Gerald; Gehlbach, Peter L.

    2012-01-01

    Abstract. The authors describe the development of an ultrafast three-dimensional (3D) optical coherence tomography (OCT) imaging system that provides real-time intraoperative video images of the surgical site to assist surgeons during microsurgical procedures. This system is based on a full-range complex conjugate free Fourier-domain OCT (FD-OCT). The system was built in a CPU-GPU heterogeneous computing architecture capable of video OCT image processing. The system displays at a maximum speed of 10  volume/s for an image volume size of 160×80×1024 (X×Y×Z) pixels. We have used this system to visualize and guide two prototypical microsurgical maneuvers: microvascular anastomosis of the rat femoral artery and ultramicrovascular isolation of the retinal arterioles of the bovine retina. Our preliminary experiments using 3D-OCT-guided microvascular anastomosis showed optimal visualization of the rat femoral artery (diameter<0.8  mm), instruments, and suture material. Real-time intraoperative guidance helped facilitate precise suture placement due to optimized views of the vessel wall during anastomosis. Using the bovine retina as a model system, we have performed “ultra microvascular” feasibility studies by guiding handheld surgical micro-instruments to isolate retinal arterioles (diameter∼0.1  mm). Isolation of the microvessels was confirmed by successfully passing a suture beneath the vessel in the 3D imaging environment. PMID:23224164

  4. Innovative optical scanning technique and device for three-dimensional full-scale measurement of wind-turbine blades

    NASA Astrophysics Data System (ADS)

    Fu, Ho-Ling; Fan, Kuang-Chao; Huang, Yu-Jan; Hu, Ming-Kai

    2014-12-01

    A full-scale three-dimensional profile measurement system with an innovative optical setup for measuring the geometric shape of large wind-turbine blades in high accuracy is developed. A normal full-scale wind blade geometry measurement system can be very expensive. The presented system is low cost, but it can yield a high accuracy for geometric dimensions by error compensation from its measured data. It consists of a low cost long linear stage driven by a direct current motor with linear scale feedback for position and velocity control, and two line-scan optical heads mounted on opposite sides. The line image of the sectional shape profile can be captured by two charge-coupled devices. By scanning the optical head throughout the full length of the blade, the image of the whole profile can be collected. The shape parameters of the wind-turbine blades can thus be determined. A special effort has been employed to improve the straightness and positioning accuracy of the linear stage by error compensation. With system calibration of the stage and the cameras, experimental results show high accuracy of the developed system. This low-cost optical system is expected to measure any full-scale wind blade profile up to several meters in length.

  5. Three-dimensional optic axis determination using variable-incidence-angle polarization-optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Ugryumova, Nadezhda; Gangnus, Sergei V.; Matcher, Stephen J.

    2006-08-01

    Polarization optical coherence tomography (PSOCT) is a powerful technique to nondestructively map the retardance and fast-axis orientation of birefringent biological tissues. Previous studies have concentrated on the case where the optic axis lies on the plane of the surface. We describe a method to determine the polar angle of the optic axis of a uniaxial birefringent tissue by making PSOCT measurements with a number of incident illumination directions. The method is validated on equine flexor tendon, yielding a variability of 4% for the true birefringence and 3% for the polar angle. We use the method to map the polar angle of fibers in the transitional region of equine cartilage.

  6. Bottle beam based optical trapping system for three-dimensional trapping of high and low index microparticles

    NASA Astrophysics Data System (ADS)

    Ahluwalia, Balpreet Singh; Yuan, Xiaocong; Tao, Shaohua

    2005-08-01

    The quest for applying optical tweezers system for novel applications has aggrandized its trapping capabilities since its inception. Researchers have proposed and applied light based micro-manipulation technique in the field of colloidal sciences, bioscience, MEMS and the count is limitless. In this paper we report the self-imaged optical bottle beam based optical tweezers system. A self-imaged bottle beam possesses three-dimensional intensity-null points along the propagation axis. The transverse intensity profile of the self-imaged bottle beam oscillates along the propagation axis, hence providing three-dimensional trapping potential for high and low indices microparticles at constructive and destructive interference points, respectively. Bottle beam based optical tweezer system adds the beneficial property of Gaussian and Bessel beam based trapping systems by providing three-dimensional trapping potential and self-reconstruction ability, respectively. As self-imaged bottle beam belong to the family of propagation-invariant beams, it can be used to trap chain of high and low indices microparticles three-dimensionally along the propagation directions, which can be used to periodically stack microparticles (of different refractive index) longitudinally.

  7. Inverse dynamical photon scattering (IDPS): an artificial neural network based algorithm for three-dimensional quantitative imaging in optical microscopy.

    PubMed

    Jiang, Xiaoming; Van den Broek, Wouter; Koch, Christoph T

    2016-04-01

    Inverse dynamical photon scattering (IDPS), an artificial neural network based algorithm for three-dimensional quantitative imaging in optical microscopy, is introduced. Because the inverse problem entails numerical minimization of an explicit error metric, it becomes possible to freely choose a more robust metric, to introduce regularization of the solution, and to retrieve unknown experimental settings or microscope values, while the starting guess is simply set to zero. The regularization is accomplished through an alternate directions augmented Lagrangian approach, implemented on a graphics processing unit. These improvements are demonstrated on open source experimental data, retrieving three-dimensional amplitude and phase for a thick specimen. PMID:27136994

  8. Three-dimensional dosimetry of small megavoltage radiation fields using radiochromic gels and optical CT scanning

    NASA Astrophysics Data System (ADS)

    Babic, Steven; McNiven, Andrea; Battista, Jerry; Jordan, Kevin

    2009-04-01

    The dosimetry of small fields as used in stereotactic radiotherapy, radiosurgery and intensity-modulated radiation therapy can be challenging and inaccurate due to partial volume averaging effects and possible disruption of charged particle equilibrium. Consequently, there exists a need for an integrating, tissue equivalent dosimeter with high spatial resolution to avoid perturbing the radiation beam and artificially broadening the measured beam penumbra. In this work, radiochromic ferrous xylenol-orange (FX) and leuco crystal violet (LCV) micelle gels were used to measure relative dose factors (RDFs), percent depth dose profiles and relative lateral beam profiles of 6 MV x-ray pencil beams of diameter 28.1, 9.8 and 4.9 mm. The pencil beams were produced via stereotactic collimators mounted on a Varian 2100 EX linear accelerator. The gels were read using optical computed tomography (CT). Data sets were compared quantitatively with dosimetric measurements made with radiographic (Kodak EDR2) and radiochromic (GAFChromic® EBT) film, respectively. Using a fast cone-beam optical CT scanner (Vista™), corrections for diffusion in the FX gel data yielded RDFs that were comparable to those obtained by minimally diffusing LCV gels. Considering EBT film-measured RDF data as reference, cone-beam CT-scanned LCV gel data, corrected for scattered stray light, were found to be in agreement within 0.5% and -0.6% for the 9.8 and 4.9 mm diameter fields, respectively. The validity of the scattered stray light correction was confirmed by general agreement with RDF data obtained from the same LCV gel read out with a laser CT scanner that is less prone to the acceptance of scattered stray light. Percent depth dose profiles and lateral beam profiles were found to agree within experimental error for the FX gel (corrected for diffusion), LCV gel (corrected for scattered stray light), and EBT and EDR2 films. The results from this study reveal that a three-dimensional dosimetry method

  9. Development of a compression molding process for three-dimensional tailored free-form glass optics

    NASA Astrophysics Data System (ADS)

    Yi, Allen Y.; Huang, Chunning; Klocke, Fritz; Brecher, Christian; Pongs, Guido; Winterschladen, Markus; Demmer, Axel; Lange, Sven; Bergs, Thomas; Merz, Michael; Niehaus, Frank

    2006-09-01

    Because of the limitation of manufacturing capability, free-form glass optics cannot be produced in a large volume using traditional processes such as grinding, lapping, and polishing. Very recently compression molding of glass optics became a viable manufacturing process for the high-volume production of precision glass optical components. An ultraprecision diamond-turning machine retrofitted with a fast tool servo was used to fabricate a free-form optical mold on a nickel-plated surface. A nonuniform rational B-spline trajectory generator was developed to calculate the computer numerical control machine tool path. A specially formulated glass with low transition temperature (Tg) was used, since the nickel alloy mold cannot withstand the high temperatures required for regular optical glasses. We describe the details of this process, from optical surface geometry, mold making, molding experiment, to lens measurement.

  10. Development of a compression molding process for three-dimensional tailored free-form glass optics.

    PubMed

    Yi, Allen Y; Huang, Chunning; Klocke, Fritz; Brecher, Christian; Pongs, Guido; Winterschladen, Markus; Demmer, Axel; Lange, Sven; Bergs, Thomas; Merz, Michael; Niehaus, Frank

    2006-09-01

    Because of the limitation of manufacturing capability, free-form glass optics cannot be produced in a large volume using traditional processes such as grinding, lapping, and polishing. Very recently compression molding of glass optics became a viable manufacturing process for the high-volume production of precision glass optical components. An ultraprecision diamond-turning machine retrofitted with a fast tool servo was used to fabricate a free-form optical mold on a nickel-plated surface. A nonuniform rational B-spline trajectory generator was developed to calculate the computer numerical control machine tool path. A specially formulated glass with low transition temperature (Tg) was used, since the nickel alloy mold cannot withstand the high temperatures required for regular optical glasses. We describe the details of this process, from optical surface geometry, mold making, molding experiment, to lens measurement. PMID:16912790

  11. IBSIMU: a three-dimensional simulation software for charged particle optics.

    PubMed

    Kalvas, T; Tarvainen, O; Ropponen, T; Steczkiewicz, O; Arje, J; Clark, H

    2010-02-01

    A general-purpose three-dimensional (3D) simulation code IBSIMU for charged particle optics with space charge is under development at JYFL. The code was originally developed for designing a slit-beam plasma extraction and nanosecond scale chopping for pulsed neutron generator, but has been developed further and has been used for many applications. The code features a nonlinear FDM Poisson's equation solver based on fast stabilized biconjugate gradient method with ILU0 preconditioner for solving electrostatic fields. A generally accepted nonlinear plasma model is used for plasma extraction. Magnetic fields can be imported to the simulations from other programs. The particle trajectories are solved using adaptive Runge-Kutta method. Steady-state and time-dependent problems can be modeled in cylindrical coordinates, two-dimensional (slit) geometry, or full 3D. The code is used via C++ programming language for versatility but it features an interactive easy-to-use postprocessing tool for diagnosing fields and particle trajectories. The open source distribution and public documentation make the code well suited for scientific use. IBSIMU has been used for modeling the 14 GHz ECR ion source extraction and for designing a four-electrode extraction for a 2.45 GHz microwave ion source at Jyväskylä. A grid extraction has also been designed for producing large uniform beam for creating conditions similar to solar wind. The code has also been used to design a H(-) extraction with electron dumping for the Cyclotron Institute of Texas A&M University. PMID:20192443

  12. Automatic three-dimensional registration of intravascular optical coherence tomography images

    NASA Astrophysics Data System (ADS)

    Ughi, Giovanni J.; Adriaenssens, Tom; Larsson, Matilda; Dubois, Christophe; Sinnaeve, Peter R.; Coosemans, Mark; Desmet, Walter; D'hooge, Jan

    2012-02-01

    Intravascular optical coherence tomography (IV-OCT) is a catheter-based high-resolution imaging technique able to visualize the inner wall of the coronary arteries and implanted devices in vivo with an axial resolution below 20 μm. IV-OCT is being used in several clinical trials aiming to quantify the vessel response to stent implantation over time. However, stent analysis is currently performed manually and corresponding images taken at different time points are matched through a very labor-intensive and subjective procedure. We present an automated method for the spatial registration of IV-OCT datasets. Stent struts are segmented through consecutive images and three-dimensional models of the stents are created for both datasets to be registered. The two models are initially roughly registered through an automatic initialization procedure and an iterative closest point algorithm is subsequently applied for a more precise registration. To correct for nonuniform rotational distortions (NURDs) and other potential acquisition artifacts, the registration is consecutively refined on a local level. The algorithm was first validated by using an in vitro experimental setup based on a polyvinyl-alcohol gel tubular phantom. Subsequently, an in vivo validation was obtained by exploiting stable vessel landmarks. The mean registration error in vitro was quantified to be 0.14 mm in the longitudinal axis and 7.3-deg mean rotation error. In vivo validation resulted in 0.23 mm in the longitudinal axis and 10.1-deg rotation error. These results indicate that the proposed methodology can be used for automatic registration of in vivo IV-OCT datasets. Such a tool will be indispensable for larger studies on vessel healing pathophysiology and reaction to stent implantation. As such, it will be valuable in testing the performance of new generations of intracoronary devices and new therapeutic drugs.

  13. Automated volumetric stent analysis of in-vivo intracoronary optical coherence tomography three-dimensional datasets

    NASA Astrophysics Data System (ADS)

    Ughi, Giovanni J.; Adriaenssens, Tom; Onsea, Kevin; Dubois, Christophe; Coosemans, Mark; Sinnaeve, Peter; Desmet, Walter; D'hooge, Jan

    2011-06-01

    Intra-vascular Optical Coherence Tomography (IV-OCT) is an appropriate imaging modality for the evaluation of stent struts apposition and coverage in the coronary arteries. Most often, image analysis is performed by a time-consuming manual contour tracing process. Recently, we proposed an algorithm for fully automated lumen morphology and individual stent struts apposition/coverage quantification. In this manuscript further developments allowing for automatic segmentation of the stent contour are presented. As such, quantification of in-stent area, malapposition cross-sectional area (i.e. the area representing the space from the stent surface to the vessel wall) and coverage cross-sectional area (i.e. the area of the tissue covering the stent surface) are automatically obtained. Volumetric measurements of malapposition and coverage are then achieved through the analysis of equally-spaced consecutive IV-OCT cross-sectional images. In addition, uncovered and malapposed struts are automatically clustered through consecutive slices according to their three-dimensional spatial position. Finally, properties of each cluster (e.g. malapposition/coverage volumes and struts spatial location and distribution) are quantified allowing for a volumetric analysis of the implanted device. Validation of the algorithm was obtained taking as a reference manual measurements performed by an expert cardiologist. 102 in-vivo images, taken at random from 8 different patients, were both automatically and manually analyzed quantifying lumen and stent area. High Pearson's correlation coefficients (Rarea = 0.99) and Bland-Altman statistics, showing no significant bias and good limits of agreement, proved that the presented algorithm provides a robust and fast tool to automatically estimate apposition and coverage of stent through an entire in-vivo IV-OCT pullback. Such a tool will be important for the integration of this technology in clinical routine and large clinical trials.

  14. Three-Dimensional Spectral-Domain Optical Coherence Tomography Data Analysis for Glaucoma Detection

    PubMed Central

    Wollstein, Gadi; Bilonick, Richard A.; Folio, Lindsey S.; Nadler, Zach; Kagemann, Larry; Schuman, Joel S.

    2013-01-01

    Purpose To develop a new three-dimensional (3D) spectral-domain optical coherence tomography (SD-OCT) data analysis method using a machine learning technique based on variable-size super pixel segmentation that efficiently utilizes full 3D dataset to improve the discrimination between early glaucomatous and healthy eyes. Methods 192 eyes of 96 subjects (44 healthy, 59 glaucoma suspect and 89 glaucomatous eyes) were scanned with SD-OCT. Each SD-OCT cube dataset was first converted into 2D feature map based on retinal nerve fiber layer (RNFL) segmentation and then divided into various number of super pixels. Unlike the conventional super pixel having a fixed number of points, this newly developed variable-size super pixel is defined as a cluster of homogeneous adjacent pixels with variable size, shape and number. Features of super pixel map were extracted and used as inputs to machine classifier (LogitBoost adaptive boosting) to automatically identify diseased eyes. For discriminating performance assessment, area under the curve (AUC) of the receiver operating characteristics of the machine classifier outputs were compared with the conventional circumpapillary RNFL (cpRNFL) thickness measurements. Results The super pixel analysis showed statistically significantly higher AUC than the cpRNFL (0.855 vs. 0.707, respectively, p = 0.031, Jackknife test) when glaucoma suspects were discriminated from healthy, while no significant difference was found when confirmed glaucoma eyes were discriminated from healthy eyes. Conclusions A novel 3D OCT analysis technique performed at least as well as the cpRNFL in glaucoma discrimination and even better at glaucoma suspect discrimination. This new method has the potential to improve early detection of glaucomatous damage. PMID:23408988

  15. Three-dimensional controlled growth of monodisperse sub-50 nm heterogeneous nanocrystals

    NASA Astrophysics Data System (ADS)

    Liu, Deming; Xu, Xiaoxue; Du, Yi; Qin, Xian; Zhang, Yuhai; Ma, Chenshuo; Wen, Shihui; Ren, Wei; Goldys, Ewa M.; Piper, James A.; Dou, Shixue; Liu, Xiaogang; Jin, Dayong

    2016-01-01

    The ultimate frontier in nanomaterials engineering is to realize their composition control with atomic scale precision to enable fabrication of nanoparticles with desirable size, shape and surface properties. Such control becomes even more useful when growing hybrid nanocrystals designed to integrate multiple functionalities. Here we report achieving such degree of control in a family of rare-earth-doped nanomaterials. We experimentally verify the co-existence and different roles of oleate anions (OA-) and molecules (OAH) in the crystal formation. We identify that the control over the ratio of OA- to OAH can be used to directionally inhibit, promote or etch the crystallographic facets of the nanoparticles. This control enables selective grafting of shells with complex morphologies grown over nanocrystal cores, thus allowing the fabrication of a diverse library of monodisperse sub-50 nm nanoparticles. With such programmable additive and subtractive engineering a variety of three-dimensional shapes can be implemented using a bottom-up scalable approach.

  16. Coordination control of quadrotor VTOL aircraft in three-dimensional space

    NASA Astrophysics Data System (ADS)

    Do, K. D.

    2015-03-01

    This paper presents a constructive design of distributed coordination controllers for a group of N quadrotor vertical take-off and landing (VTOL) aircraft in three-dimensional space. A combination of Euler angles and unit-quaternion for the attitude representation of the aircraft is used to result in an effective control design, and to reduce singularities in the aircraft's dynamics. The coordination control design is based on a new bounded control design technique for second-order systems and new pairwise collision avoidance functions. The pairwise collision functions are functions of both relative positions and relative velocities between the aircraft instead of only their relative positions as in the literature. To overcome the inherent underactuation of the aircraft, the roll and pitch angles of the aircraft are considered as immediate controls. Simulations illustrate the results.

  17. Adaptive femtosecond control using feedback from three-dimensional momentum images

    NASA Astrophysics Data System (ADS)

    Wells, E.

    2011-05-01

    Shaping ultrafast laser pulses using adaptive feedback is a proven technique for manipulating dynamics in molecular systems with no readily apparent control mechanism. Commonly employed feedback signals include fluorescence or ion yield, which may not uniquely identify the final state. Raw velocity map images, which contain a two-dimensional representation of the full three-dimensional photofragment momentum vector, are a more specific feedback source. The raw images, however, are limited by an azimuthal ambiguity which is usually removed in offline processing. By implementing a rapid inversion procedure based upon the onion-peeling technique, we are able to incorporate three-dimensional momentum information directly into the adaptive control loop. This method enables more targeted control experiments. Two examples are used to demonstrate the utility of this feedback. First, double ionization of CO produces C+ and O+ fragments ejected both perpendicular and parallel to the laser polarization with kinetic energy release of ~6 eV. Both suppression and enhancement of the perpendicular transitions relative to the parallel transitions are demonstrated. Second, double ionization of acetylene can lead to both HCCH2+ and HHCC2+ isomers. We select between these outcomes using the angular information contained in the CH+ and CH2+images. Supported by National Science Foundation award PHY-0969687 and the Chemical Sciences, Geosciences, and Biosciences Division, Office of Basic Energy Science, Office of Science, US Department of Energy.

  18. Optical phase cloaking of 700 nm light waves in the far field by a three-dimensional carpet cloak.

    PubMed

    Ergin, Tolga; Fischer, Joachim; Wegener, Martin

    2011-10-21

    Transformation optics is a design tool that connects the geometry of space and propagation of light. Invisibility cloaking is a corresponding benchmark example. Recent experiments at optical frequencies have demonstrated cloaking for the light amplitude only. In this Letter, we demonstrate far-field cloaking of the light phase by interferometric microscope-imaging experiments on the previously introduced three-dimensional carpet cloak at 700 nm wavelength and for arbitrary polarization of light. PMID:22107517

  19. Three-dimensional patterning and morphological control of porous nanomaterials by gray-scale direct imprinting

    PubMed Central

    Ryckman, Judson D.; Jiao, Yang; Weiss, Sharon M.

    2013-01-01

    We present a method for direct three-dimensional (3D) patterning of porous nanomaterials through the application of a premastered and reusable gray-scale stamp. Four classes of 3D nanostructures are demonstrated for the first time in porous media: gradient profiles, digital patterns, curves and lens shapes, and sharp features including v-grooves, nano-pits, and ‘cookie-cutter’ particles. Further, we demonstrate this technique enables morphological tuning and direct tailoring of nanomaterial properties, including porosity, average pore size, dielectric constant, and plasmonic response. This work opens a rapid and low-cost route for fabricating novel nanostructures and devices utilizing porous nanomaterials, with promising applications spanning diffractive and plasmonic sensing, holography, micro- and transformation optics, and drug delivery and imaging. PMID:23518798

  20. Three-dimensional patterning and morphological control of porous nanomaterials by gray-scale direct imprinting.

    PubMed

    Ryckman, Judson D; Jiao, Yang; Weiss, Sharon M

    2013-01-01

    We present a method for direct three-dimensional (3D) patterning of porous nanomaterials through the application of a premastered and reusable gray-scale stamp. Four classes of 3D nanostructures are demonstrated for the first time in porous media: gradient profiles, digital patterns, curves and lens shapes, and sharp features including v-grooves, nano-pits, and 'cookie-cutter' particles. Further, we demonstrate this technique enables morphological tuning and direct tailoring of nanomaterial properties, including porosity, average pore size, dielectric constant, and plasmonic response. This work opens a rapid and low-cost route for fabricating novel nanostructures and devices utilizing porous nanomaterials, with promising applications spanning diffractive and plasmonic sensing, holography, micro- and transformation optics, and drug delivery and imaging. PMID:23518798

  1. Three-dimensional positioning control based on stereo microscopic visual servoing system

    NASA Astrophysics Data System (ADS)

    Sha, Xiaopeng; Li, Huiguang; Li, Wenchao; Wang, Shuai

    2015-01-01

    A stereo microscopic system as a high-precision visual feedback is widely used in the fields of micro-three-dimensional (3-D) measurement and micromanipulation tasks. A new stereo binocular visual servoing model based on a Greenough-type stereoscopic light microscope to solve the 3-D micropositioning problem is proposed. The new model contains no depth information, but the information at the left and right images is used to obtain the image Jacobian matrix. Visual information can be directly obtained from the 3-D space without measuring or estimating the depth information of the unknown points of the object via this new model. The new model can not only accurately and rapidly realize automatic control for a micromanipulation system, but also improve the system control performance. We design an image-based controller with consideration of the kinematics characteristics of a microrobot. Experimental results verify the validity of the model.

  2. Superhydrophobic PDMS surfaces with three-dimensional (3D) pattern-dependent controllable adhesion

    NASA Astrophysics Data System (ADS)

    Yong, Jiale; Yang, Qing; Chen, Feng; Zhang, Dongshi; Du, Guangqing; Bian, Hao; Si, Jinhai; Yun, Feng; Hou, Xun

    2014-01-01

    In this paper, we demonstrate an effective approach for the three-dimensional (3D) pattern-structured superhydrophobic PDMS surfaces with controllable adhesion by using femtosecond laser etching method. By combining different laser power with a multi-layered etching way, various 3D patterns can be fabricated (for example, convex triangle array, round pit array, cylindrical array, convex rhombus array and concave triangle-cone array). The as-prepared surfaces with 3D patterns show superhydrophobic character and water controllable adhesion that range from ultralow to ultrahigh by designing different 3D patterns, on which the sliding angle can be controlled from 1° to 90° (the water droplet is firmly pinned on the superhydrophobic surface without any movement at any tilted angles). The 3D pattern-dependent adhesive property is attributed to the different contact modes. This work will provide a facile and promising strategy for the adhesion adjustment on superhydrophobic surfaces.

  3. Controlled synthesis of hyper-branched inorganic nanocrystals withrich three-dimensional structures

    SciTech Connect

    Kanaras, Antonios G.; Sonnichsen, Carsten; Liu, Haitao; Alivisatos, A. Paul

    2005-07-27

    Studies of crystal growth kinetics are tightly integrated with advances in the creation of new nanoscale inorganic building blocks and their functional assemblies 1-11. Recent examples include the development of semiconductor nanorods which have potential uses in solar cells 12-17, and the discovery of a light driven process to create noble metal particles with sharp corners that can be used in plasmonics 18,19. In the course of studying basic crystal growth kinetics we developed a process for preparing branched semiconductor nanocrystals such as tetrapods and inorganic dendrimers of precisely controlled generation 20,21. Here we report the discovery of a crystal growth kinetics regime in which a new class of hyper-branched nanocrystals are formed. The shapes range from 'thorny balls', to tree-like ramified structures, to delicate 'spider net'-like particles. These intricate shapes depend crucially on a delicate balance of branching and extension. The multitudes of resulting shapes recall the diverse shapes of snowflakes 22.The three dimensional nature of the branch points here, however, lead to even more complex arrangements than the two dimensionally branched structures observed in ice. These hyper-branched particles not only extend the available three-dimensional shapes in nanoparticle synthesis ,but also provide a tool to study growth kinetics by carefully observing and modeling particle morphology.

  4. Three-dimensional flow structures and vorticity control in fish-like swimming

    NASA Astrophysics Data System (ADS)

    Zhu, Q.; Wolfgang, M. J.; Yue, D. K. P.; Triantafyllou, M. S.

    2002-10-01

    We employ a three-dimensional, nonlinear inviscid numerical method, in conjunction with experimental data from live fish and from a fish-like robotic mechanism, to establish the three-dimensional features of the flow around a fish-like body swimming in a straight line, and to identify the principal mechanisms of vorticity control employed in fish-like swimming. The computations contain no structural model for the fish and hence no recoil correction. First, we show the near-body flow structure produced by the travelling-wave undulations of the bodies of a tuna and a giant danio. As revealed in cross-sectional planes, for tuna the flow contains dominant features resembling the flow around a two-dimensional oscillating plate over most of the length of the fish body. For the giant danio, on the other hand, a mixed longitudinal transverse structure appears along the hind part of the body. We also investigate the interaction of the body-generated vortices with the oscillating caudal fin and with tail-generated vorticity. Two distinct vorticity interaction modes are identified: the first mode results in high thrust and is generated by constructive pairing of body-generated vorticity with same-sign tail-generated vorticity, resulting in the formation of a strong thrust wake; the second corresponds to high propulsive efficiency and is generated by destructive pairing of body-generated vorticity with opposite-sign tail-generated vorticity, resulting in the formation of a weak thrust wake.

  5. Numerical study of three-dimensional separation and flow control at a wing/body junction

    NASA Technical Reports Server (NTRS)

    Ash, Robert L.; Lakshmanan, Balakrishnan

    1989-01-01

    The problem of three-dimensional separation and flow control at a wing/body junction has been investigated numerically using a three-dimensional Navier-Stokes code. The numerical code employs an algebraic grid generation technique for generating the grid for unmodified junction and an elliptic grid generation technique for filleted fin junction. The results for laminar flow past a blunt fin/flat plate junction demonstrate that after grid refinement, the computations agree with experiment and reveal a strong dependency of the number of vortices at the junction on Mach number and Reynolds number. The numerical results for pressure distribution, particle paths and limiting streamlines for turbulent flow past a swept fin show a decrease in the peak pressure and in the extent of the separated flow region compared to the laminar case. The results for a filleted juncture indicate that the streamline patterns lose much of their vortical character with proper filleting. Fillets with a radius of three and one-half times the fin leading edge diameter or two times the incoming boundary layer thickness, significantly weaken the usual necklace interaction vortex for the Mach number and Reynolds number considered in the present study.

  6. Depth-tunable three-dimensional display with interactive light field control

    NASA Astrophysics Data System (ADS)

    Xie, Songlin; Wang, Peng; Sang, Xinzhu; Li, Chenyu; Dou, Wenhua; Xiao, Liquan

    2016-07-01

    A software-defined depth-tunable three-dimensional (3D) display with interactive 3D depth control is presented. With the proposed post-processing system, the disparity of the multi-view media can be freely adjusted. Benefiting from a wealth of information inherently contains in dense multi-view images captured with parallel arrangement camera array, the 3D light field is built and the light field structure is controlled to adjust the disparity without additional acquired depth information since the light field structure itself contains depth information. A statistical analysis based on the least square is carried out to extract the depth information inherently exists in the light field structure and the accurate depth information can be used to re-parameterize light fields for the autostereoscopic display, and a smooth motion parallax can be guaranteed. Experimental results show that the system is convenient and effective to adjust the 3D scene performance in the 3D display.

  7. Three-dimensional structure and multistable optical switching of triple-twisted particle-like excitations in anisotropic fluids

    NASA Astrophysics Data System (ADS)

    Smalyukh, Ivan I.; Lansac, Yves; Clark, Noel A.; Trivedi, Rahul P.

    2010-02-01

    Control of structures in soft materials with long-range order forms the basis for applications such as displays, liquid-crystal biosensors, tunable lenses, distributed feedback lasers, muscle-like actuators and beam-steering devices. Bistable, tristable and multistable switching of well-defined structures of molecular alignment is of special interest for all of these applications. Here we describe the facile optical creation and multistable switching of localized configurations in the molecular orientation field of a chiral nematic anisotropic fluid. These localized chiro-elastic particle-like excitations-dubbed `triple-twist torons'-are generated by vortex laser beams and embed the localized three-dimensional (3D) twist into a uniform background. Confocal polarizing microscopy and computer simulations reveal their equilibrium internal structures, manifesting both skyrmion-like and Hopf fibration features. Robust generation of torons at predetermined locations combined with both optical and electrical reversible switching can lead to new ways of multistable structuring of complex photonic architectures in soft materials.

  8. Soft-Lithographical Fabrication of Three-dimensional Photonic Crystals in the Optical Regime

    SciTech Connect

    Jae-Hwang Lee

    2006-08-09

    This dissertation describes several projects to realize low-cost and high-quality three-dimensional (3D) microfabrication using non-photolithographic techniques for layer-by-layer photonic crystals. Low-cost, efficient 3D microfabrication is a demanding technique not only for 3D photonic crystals but also for all other scientific areas, since it may create new functionalities beyond the limit of planar structures. However, a novel 3D microfabrication technique for photonic crystals implies the development of a complete set of sub-techniques for basic layer-by-layer stacking, inter-layer alignment, and material conversion. One of the conventional soft lithographic techniques, called microtransfer molding ({mu}TM), was developed by the Whitesides group in 1996. Although {mu}TM technique potentially has a number of advantages to overcome the limit of conventional photolithographic techniques in building up 3D microstructures, it has not been studied intensively after its demonstration. This is mainly because of technical challenges in the nature of layer-by-layer fabrication, such as the demand of very high yield in fabrication. After two years of study on conventional {mu}TM, We have developed an advanced microtransfer molding technique, called two-polymer microtransfer molding (2P-{mu}TM) that shows an extremely high yield in layer-by-layer microfabrication sufficient to produce highly layered microstructures. The use of two different photo-curable prepolymers, a filler and an adhesive, allows for fabrication of layered microstructures without thin films between layers. The capabilities of 2P-{mu}TM are demonstrated by the fabrication of a wide-area 12-layer microstructure with high structural fidelity. Second, we also had to develop an alignment technique. We studied the 1st-order diffracted moire fringes of transparent multilayered structures comprised of irregularly deformed periodic patterns. By a comparison study of the diffracted moire fringe pattern and

  9. Optical distortion correction in optical coherence tomography for quantitative ocular anterior segment by three-dimensional imaging.

    PubMed

    Ortiz, Sergio; Siedlecki, Damian; Grulkowski, Ireneusz; Remon, Laura; Pascual, Daniel; Wojtkowski, Maciej; Marcos, Susana

    2010-02-01

    A method for three-dimensional 3-D optical distortion (refraction) correction on anterior segment Optical Coherence Tomography (OCT) images has been developed. The method consists of 3-D ray tracing through the different surfaces, following denoising, segmentation of the surfaces, Delaunay representation of the surfaces, and application of fan distortion correction. The correction has been applied theoretically to realistic computer eye models, and experimentally to OCT images of: an artificial eye with a Polymethyl Methacrylate (PMMA) cornea and an intraocular lens (IOL), an enucleated porcine eye, and a human eye in vivo obtained from two OCT laboratory set-ups (time domain and spectral). Data are analyzed in terms of surface radii of curvature and asphericity. Comparisons are established between the reference values for the surfaces (nominal values in the computer model; non-contact profilometric measurements for the artificial eye; Scheimpflug imaging for the real eyes in vivo and vitro). The results from the OCT data were analyzed following the conventional approach of dividing the optical path by the refractive index, after application of 2-D optical correction, and 3-D optical correction (in all cases after fan distortion correction). The application of 3-D optical distortion correction increased significantly both the accuracy of the radius of curvature estimates and particularly asphericity of the surfaces, with respect to conventional methods of OCT image analysis. We found that the discrepancies of the radii of curvature estimates from 3-D optical distortion corrected OCT images are less than 1% with respect to nominal values. Optical distortion correction in 3-D is critical for quantitative analysis of OCT anterior segment imaging, and allows accurate topography of the internal surfaces of the eye. PMID:20174107

  10. Using patterned H-resist for controlled three-dimensional growth of nanostructures

    NASA Astrophysics Data System (ADS)

    Goh, K. E. J.; Chen, S.; Xu, H.; Ballard, J.; Randall, J. N.; Von Ehr, J. R.

    2011-04-01

    We present a study addressing the effectiveness of a monolayer of hydrogen as the lithographic resist for controlled three-dimensional (3D) growth of nanostructures on the Si(100) surface. Nanoscale regions on the H-terminated Si(100) were defined by H-desorption lithography via the biased tip of a scanning tunneling microscope (STM) to create well-defined regions of surface "dangling bonds," and the growth of 3D nanostructures within these regions was achieved using a simultaneous disilane deposition and STM H-desorption technique. We demonstrate that 3D growth is strongly confined within STM depassivated regions while unpatterned H:Si(100) regions are robust against adsorption of the precursor molecules.

  11. Spatially controlled simultaneous patterning of multiple growth factors in three-dimensional hydrogels

    NASA Astrophysics Data System (ADS)

    Wylie, Ryan G.; Ahsan, Shoeb; Aizawa, Yukie; Maxwell, Karen L.; Morshead, Cindi M.; Shoichet, Molly S.

    2011-10-01

    Three-dimensional (3D) protein-patterned scaffolds provide a more biomimetic environment for cell culture than traditional two-dimensional surfaces, but simultaneous 3D protein patterning has proved difficult. We developed a method to spatially control the immobilization of different growth factors in distinct volumes in 3D hydrogels, and to specifically guide differentiation of stem/progenitor cells therein. Stem-cell differentiation factors sonic hedgehog (SHH) and ciliary neurotrophic factor (CNTF) were simultaneously immobilized using orthogonal physical binding pairs, barnase-barstar and streptavidin-biotin, respectively. Barnase and streptavidin were sequentially immobilized using two-photon chemistry for subsequent concurrent complexation with fusion proteins barstar-SHH and biotin-CNTF, resulting in bioactive 3D patterned hydrogels. The technique should be broadly applicable to the patterning of a wide range of proteins.

  12. Statistics Analysis of the Uncertainties in Cloud Optical Depth Retrievals Caused by Three-Dimensional Radiative Effects

    NASA Technical Reports Server (NTRS)

    Varnai, Tamas; Marshak, Alexander

    2000-01-01

    This paper presents a simple approach to estimate the uncertainties that arise in satellite retrievals of cloud optical depth when the retrievals use one-dimensional radiative transfer theory for heterogeneous clouds that have variations in all three dimensions. For the first time, preliminary error bounds are set to estimate the uncertainty of cloud optical depth retrievals. These estimates can help us better understand the nature of uncertainties that three-dimensional effects can introduce into retrievals of this important product of the MODIS instrument. The probability distribution of resulting retrieval errors is examined through theoretical simulations of shortwave cloud reflection for a wide variety of cloud fields. The results are used to illustrate how retrieval uncertainties change with observable and known parameters, such as solar elevation or cloud brightness. Furthermore, the results indicate that a tendency observed in an earlier study, clouds appearing thicker for oblique sun, is indeed caused by three-dimensional radiative effects.

  13. Three-dimensional speckle size in generalized optical systems with limiting apertures.

    PubMed

    Ward, Jennifer E; Kelly, Damien P; Sheridan, John T

    2009-08-01

    Correlation properties of speckle fields at the output of quadratic phase systems with hard square and circular apertures are examined. Using the linear canonical transform and ABCD ray matrix techniques to describe these general optical systems, we first derive analytical formulas for determining axial and lateral speckle sizes. Then using a numerical technique, we extend the analysis so that the correlation properties of nonaxial speckles can also be considered. Using some simple optical systems as examples, we demonstrate how this approach may be conveniently applied. The results of this analysis apply broadly both to the design of metrology systems and to speckle control schemes. PMID:19649124

  14. Tissue growth into three-dimensional composite scaffolds with controlled micro-features and nanotopographical surfaces.

    PubMed

    Tamjid, Elnaz; Simchi, Arash; Dunlop, John W C; Fratzl, Peter; Bagheri, Reza; Vossoughi, Manouchehr

    2013-10-01

    Controlling topographic features at all length scales is of great importance for the interaction of cells with tissue regenerative materials. We utilized an indirect three-dimensional printing method to fabricate polymeric scaffolds with pre-defined and controlled external and internal architecture that had an interconnected structure with macro- (400-500 μm) and micro- (∼25 μm) porosity. Polycaprolactone (PCL) was used as model system to study the kinetics of tissue growth within porous scaffolds. The surface of the scaffolds was decorated with TiO2 and bioactive glass (BG) nanoparticles to the better match to nanoarchitecture of extracellular matrix (ECM). Micrometric BG particles were also used to reveal the effect of particle size on the cell behavior. Observation of tissue growth and enzyme activity on two-dimensional (2D) films and three-dimensional (3D) scaffolds showed effects of nanoparticle inclusion and of surface curvature on the cellular adhesion, proliferation, and kinetics of preosteoblastic cells (MC3T3-E1) tissue growth into the pore channels. It was found that the presence of nanoparticles in the substrate impaired cellular adhesion and proliferation in 3D structures. Evaluation of alkaline phosphate activity showed that the presence of the hard particles affects differentiation of the cells on 2D films. Notwithstanding, the effect of particles on cell differentiation was not as strong as that seen by the curvature of the substrate. We observed different effects of nanofeatures on 2D structures with those of 3D scaffolds, which influence the cell proliferation and differentiation for non-load-bearing applications in bone regenerative medicine. PMID:23463703

  15. Longitudinal spin separation of light and its performance in three-dimensionally controllable spin-dependent focal shift

    PubMed Central

    Liu, Sheng; Li, Peng; Zhang, Yi; Gan, Xuetao; Wang, Meirong; Zhao, Jianlin

    2016-01-01

    Spin Hall effect of light, which is normally explored as a transverse spin-dependent separation of a light beam, has attracted enormous research interests. However, it seems there is no indication for the existence of the longitudinal spin separation of light. In this paper, we propose and experimentally realize the spin separation along the propagation direction by modulating the Pancharatnam-Berry (PB) phase. Due to the spin-dependent divergence and convergence determined by the PB phase, a focused Gaussian beam could split into two opposite spin states, and focuses at different distances, representing the longitudinal spin separation. By combining this longitudinal spin separation with the transverse one, we experimentally achieve the controllable spin-dependent focal shift in three dimensional space. This work provides new insight on steering the spin photons, and is expected to explore novel applications of optical trapping, manipulating, and micromachining with higher degree of freedom. PMID:26882995

  16. Longitudinal spin separation of light and its performance in three-dimensionally controllable spin-dependent focal shift.

    PubMed

    Liu, Sheng; Li, Peng; Zhang, Yi; Gan, Xuetao; Wang, Meirong; Zhao, Jianlin

    2016-01-01

    Spin Hall effect of light, which is normally explored as a transverse spin-dependent separation of a light beam, has attracted enormous research interests. However, it seems there is no indication for the existence of the longitudinal spin separation of light. In this paper, we propose and experimentally realize the spin separation along the propagation direction by modulating the Pancharatnam-Berry (PB) phase. Due to the spin-dependent divergence and convergence determined by the PB phase, a focused Gaussian beam could split into two opposite spin states, and focuses at different distances, representing the longitudinal spin separation. By combining this longitudinal spin separation with the transverse one, we experimentally achieve the controllable spin-dependent focal shift in three dimensional space. This work provides new insight on steering the spin photons, and is expected to explore novel applications of optical trapping, manipulating, and micromachining with higher degree of freedom. PMID:26882995

  17. SHG microscopy excited by polarization controlled beam for three-dimensional molecular orientation measurement

    NASA Astrophysics Data System (ADS)

    Yoshiki, K.; Hashimoto, M.; Araki, T.

    2006-08-01

    We have developed a second-harmonic-generation (SGH) microscope to observe the three-dimensional molecular orientation with three-dimensional high spatial resolution using a polarization mode converter. The mode converter consists of a parallel-aligned nematic-liquid-crystal spatial-light-modulator (PAL-SLM) and quarter-waveplates, and converts a incident linearly polarized beam to orthogonal linearly polarized beams or radially polarized beam. We combined the mode converter with SHG microscope to obtain the local information of the three-dimensional molecular orientation. We demonstrated the detection of three-dimensional molecular orientation of collagen fiber in human Achilles' tendon. For high precision three-dimensional molecular orientation measurement, we propose a technique to calibrate the dependence of SHG detection efficiencies on molecular orientation using a liposome.

  18. Processing to determine optical parameters of atherosclerotic disease from phantom and clinical intravascular optical coherence tomography three-dimensional pullbacks.

    PubMed

    Shalev, Ronny; Gargesha, Madhusudhana; Prabhu, David; Tanaka, Kentaro; Rollins, Andrew M; Lamouche, Guy; Bisaillon, Charles-Etienne; Bezerra, Hiram G; Ray, Soumya; Wilson, David L

    2016-04-01

    Analysis of intravascular optical coherence tomography (IVOCT) data has potential for real-time in vivo plaque classification. We developed a processing pipeline on a three-dimensional local region of support for estimation of optical properties of atherosclerotic plaques from coronary artery, IVOCT pullbacks. Using realistic coronary artery disease phantoms, we determined insignificant differences in mean and standard deviation estimates between our pullback analyses and more conventional processing of stationary acquisitions with frame averaging. There was no effect of tissue depth or oblique imaging on pullback parameter estimates. The method's performance was assessed in comparison with observer-defined standards using clinical pullback data. Values (calcium [Formula: see text], lipid [Formula: see text], and fibrous [Formula: see text]) were consistent with previous measurements obtained by other means. Using optical parameters ([Formula: see text], [Formula: see text], [Formula: see text]), we achieved feature space separation of plaque types and classification accuracy of [Formula: see text]. Despite the rapid [Formula: see text] motion and varying incidence angle in pullbacks, the proposed computational pipeline appears to work as well as a more standard "stationary" approach. PMID:27213167

  19. Three-dimensional closed-loop control of self-propelled microjets

    NASA Astrophysics Data System (ADS)

    Khalil, Islam S. M.; Magdanz, Veronika; Sanchez, Samuel; Schmidt, Oliver G.; Misra, Sarthak

    2013-10-01

    We demonstrate precise closed-loop control of microjets under the influence of the magnetic fields in three-dimensional (3D) space. For this purpose, we design a magnetic-based control system that directs the field lines towards reference positions. Microjets align along the controlled field lines using the magnetic torque exerted on their magnetic dipole, and move towards the reference positions using their self-propulsion force. We demonstrate the controlled motion of microjets in 3D space, and show that their propulsion force allows them to overcome vertical forces, such as buoyancy forces, interaction forces with oxygen bubbles, and vertical flow. The closed-loop control localizes the microjets within a spherical region of convergence with an average diameter of 406±220 μm, whereas the self-propulsion force allows them to swim at an average speed of 222±74 μm/s within the horizontal plane. Furthermore, we observe that the controlled microjets dive downward and swim upward towards reference positions at average speeds of 232±40 μm/s and 316±81 μm/s, respectively.

  20. Three-dimensional controlled growth of monodisperse sub-50 nm heterogeneous nanocrystals

    PubMed Central

    Liu, Deming; Xu, Xiaoxue; Du, Yi; Qin, Xian; Zhang, Yuhai; Ma, Chenshuo; Wen, Shihui; Ren, Wei; Goldys, Ewa M.; Piper, James A.; Dou, Shixue; Liu, Xiaogang; Jin, Dayong

    2016-01-01

    The ultimate frontier in nanomaterials engineering is to realize their composition control with atomic scale precision to enable fabrication of nanoparticles with desirable size, shape and surface properties. Such control becomes even more useful when growing hybrid nanocrystals designed to integrate multiple functionalities. Here we report achieving such degree of control in a family of rare-earth-doped nanomaterials. We experimentally verify the co-existence and different roles of oleate anions (OA−) and molecules (OAH) in the crystal formation. We identify that the control over the ratio of OA− to OAH can be used to directionally inhibit, promote or etch the crystallographic facets of the nanoparticles. This control enables selective grafting of shells with complex morphologies grown over nanocrystal cores, thus allowing the fabrication of a diverse library of monodisperse sub-50 nm nanoparticles. With such programmable additive and subtractive engineering a variety of three-dimensional shapes can be implemented using a bottom–up scalable approach. PMID:26743184

  1. Three-dimensional controlled growth of monodisperse sub-50 nm heterogeneous nanocrystals.

    PubMed

    Liu, Deming; Xu, Xiaoxue; Du, Yi; Qin, Xian; Zhang, Yuhai; Ma, Chenshuo; Wen, Shihui; Ren, Wei; Goldys, Ewa M; Piper, James A; Dou, Shixue; Liu, Xiaogang; Jin, Dayong

    2016-01-01

    The ultimate frontier in nanomaterials engineering is to realize their composition control with atomic scale precision to enable fabrication of nanoparticles with desirable size, shape and surface properties. Such control becomes even more useful when growing hybrid nanocrystals designed to integrate multiple functionalities. Here we report achieving such degree of control in a family of rare-earth-doped nanomaterials. We experimentally verify the co-existence and different roles of oleate anions (OA(-)) and molecules (OAH) in the crystal formation. We identify that the control over the ratio of OA(-) to OAH can be used to directionally inhibit, promote or etch the crystallographic facets of the nanoparticles. This control enables selective grafting of shells with complex morphologies grown over nanocrystal cores, thus allowing the fabrication of a diverse library of monodisperse sub-50 nm nanoparticles. With such programmable additive and subtractive engineering a variety of three-dimensional shapes can be implemented using a bottom-up scalable approach. PMID:26743184

  2. Differentiation of Benign and Malignant Breast Tumors by In-Vivo Three-Dimensional Parallel-Plate Diffuse Optical Tomography

    PubMed Central

    Choe, Regine; Konecky, Soren D.; Corlu, Alper; Lee, Kijoon; Durduran, Turgut; Busch, David R.; Pathak, Saurav; Czerniecki, Brian J.; Tchou, Julia; Fraker, Douglas L.; DeMichele, Angela; Chance, Britton; Arridge, Simon R.; Schweiger, Martin; Culver, Joseph P.; Schnall, Mitchell D.; Putt, Mary E.; Rosen, Mark A.; Yodh, Arjun G.

    2009-01-01

    We have developed a novel parallel-plate diffuse optical tomography (DOT) system for three-dimensional in vivo imaging of human breast tumor based on large optical data sets. Images of oxy-, deoxy-, total-hemoglobin concentration, blood oxygen saturation, and tissue scattering were reconstructed. Tumor margins were derived using the optical data with guidance from radiology reports and Magnetic Resonance Imaging. Tumor-to-normal ratios of these endogenous physiological parameters and an optical index were computed for 51 biopsy-proven lesions from 47 subjects. Malignant cancers (N=41) showed statistically significant higher total hemoglobin, oxy-hemoglobin concentration, and scattering compared to normal tissue. Furthermore, malignant lesions exhibited a two-fold average increase in optical index. The influence of core biopsy on DOT results was also explored; the difference between the malignant group measured before core biopsy and the group measured more than one week after core biopsy was not significant. Benign tumors (N=10) did not exhibit statistical significance in the tumor-to-normal ratios of any parameter. Optical index and tumor-to-normal ratios of total hemoglobin, oxy-hemoglobin concentration, and scattering exhibited high area under the receiver operating characteristic curve values from 0.90 to 0.99, suggesting good discriminatory power. The data demonstrate that benign and malignant lesions can be distinguished by quantitative three-dimensional DOT. PMID:19405750

  3. Differentiation of benign and malignant breast tumors by in-vivo three-dimensional parallel-plate diffuse optical tomography

    NASA Astrophysics Data System (ADS)

    Choe, Regine; Konecky, Soren D.; Corlu, Alper; Lee, Kijoon; Durduran, Turgut; Busch, David R.; Pathak, Saurav; Czerniecki, Brian J.; Tchou, Julia; Fraker, Douglas L.; Demichele, Angela; Chance, Britton; Arridge, Simon R.; Schweiger, Martin; Culver, Joseph P.; Schnall, Mitchell D.; Putt, Mary E.; Rosen, Mark A.; Yodh, Arjun G.

    2009-03-01

    We have developed a novel parallel-plate diffuse optical tomography (DOT) system for three-dimensional in vivo imaging of human breast tumor based on large optical data sets. Images of oxy-, deoxy-, and total hemoglobin concentration as well as blood oxygen saturation and tissue scattering were reconstructed. Tumor margins were derived using the optical data with guidance from radiology reports and magnetic resonance imaging. Tumor-to-normal ratios of these endogenous physiological parameters and an optical index were computed for 51 biopsy-proven lesions from 47 subjects. Malignant cancers (N=41) showed statistically significant higher total hemoglobin, oxy-hemoglobin concentration, and scattering compared to normal tissue. Furthermore, malignant lesions exhibited a twofold average increase in optical index. The influence of core biopsy on DOT results was also explored; the difference between the malignant group measured before core biopsy and the group measured more than 1 week after core biopsy was not significant. Benign tumors (N=10) did not exhibit statistical significance in the tumor-to-normal ratios of any parameter. Optical index and tumor-to-normal ratios of total hemoglobin, oxy-hemoglobin concentration, and scattering exhibited high area under the receiver operating characteristic curve values from 0.90 to 0.99, suggesting good discriminatory power. The data demonstrate that benign and malignant lesions can be distinguished by quantitative three-dimensional DOT.

  4. Fractal frequency spectrum in laser resonators and three-dimensional geometric topology of optical coherent waves

    NASA Astrophysics Data System (ADS)

    Tung, J. C.; Tuan, P. H.; Liang, H. C.; Huang, K. F.; Chen, Y. F.

    2016-08-01

    We theoretically verify that the symmetry breaking in spherical resonators can result in a fractal frequency spectrum that is full of numerous new accidental degeneracies to cluster around the unperturbed degenerate cavity. We further experimentally discover that the fractal frequency spectrum excellently reflects the intimate connection between the emission power and the degenerate mode numbers. It is observed that the wave distributions of lasing modes at the accidental degeneracies are strongly concentrated on three-dimensional (3D) geometric topology. Considering the overlapping effect, the wave representation of the coherent states is analytically derived to manifest the observed 3D geometric surfaces.

  5. Optical modeling of a line-scan optical coherence tomography system for high-speed three-dimensional endoscopic imaging

    NASA Astrophysics Data System (ADS)

    Kamal, Mohammad; Sivakumar, Narayanswamy; Packirisamy, Muthukumaran

    2009-06-01

    The optical and analytical modeling of a line-scan optical coherence tomography (LS-OCT) system for high-speed three-dimensional (3D) endoscopic imaging is reported. To avoid complex lens system and image distortion error, an off-axis cylindrical mirror is used for focusing the line illumination on the sample surface and a micro mirror scanner is integrated with the proposed configuration for transverse scanning. The beams are swept on the cylindrical mirror by the micro mirror rotation and finally focused on the sample surface for transverse scanning. A 2mm by 3.2mm en-face scanning is configured with a 2mm focused line and +/-3° scanning mirror rotation. The proposed configuration also has the capability of dynamic focusing by the movement of the cylindrical mirror without changing the transverse resolution. The cylindrical mirror enhances the image quality by reducing the aberration. The system is capable of real-time 3D imaging with 5μm and 10 μm axial and transverse resolutions, respectively.

  6. Stability and Control of Constrained Three-Dimensional Robotic Systems with Application to Bipedal Postural Movements

    NASA Astrophysics Data System (ADS)

    Kallel, Hichem

    Three classes of postural adjustments are investigated with the view of a better understanding of the control mechanisms involved in human movement. The control mechanisms and responses of human or computer models to deliberately induced disturbances in postural adjustments are the focus of this dissertation. The classes of postural adjustments are automatic adjustments, (i.e. adjustments not involving voluntary deliberate movement), adjustments involving imposition of constraints for the purpose of maintaining support forces, and adjustments involving violation and imposition of constraints for the purpose of maintaining balance, (i.e. taking one or more steps). For each class, based on the physiological attributes of the control mechanisms in human movements, control strategies are developed to synthesize the desired postural response. The control strategies involve position and velocity feedback control, on line relegation control, and pre-stored trajectory control. Stability analysis for constrained and unconstrained maneuvers is carried out based on Lyapunov stability theorems. The analysis is based on multi-segment biped robots. Depending on the class of postural adjustments, different biped models are developed. An eight-segment three dimensional biped model is formulated for the study of automatic adjustments and adjustments for balance. For the study of adjustments for support, a four segment lateral biped model is considered. Muscle synergies in automatic adjustments are analyzed based on a three link six muscle system. The muscle synergies considered involve minimal muscle number and muscle co-activation. The role of active and passive feedback in these automatic adjustments is investigated based on the specified stiffness and damping of the segments. The effectiveness of the control strategies and the role of muscle synergies in automatic adjustments are demonstrated by a number of digital computer simulations.

  7. Simultaneous three-dimensional optical coherence tomography and intravital microscopy for imaging subpleural pulmonary alveoli in isolated rabbit lungs

    NASA Astrophysics Data System (ADS)

    Meissner, Sven; Knels, Lilla; Krueger, Alexander; Koch, Thea; Koch, Edmund

    2009-09-01

    There is a growing interest in analyzing lung mechanics at the level of the alveoli in order to understand stress-related pathogenesis and possibly avoid ventilator associated lung injury. Emerging quantitative models to simulate fluid mechanics and the associated stresses and strains on delicate alveolar walls require realistic quantitative input on alveolar geometry and its dynamics during ventilation. Here, three-dimensional optical coherence tomography (OCT) and conventional intravital microscopy are joined in one setup to investigate the geometric changes of subpleural alveoli during stepwise pressure increase and release in an isolated and perfused rabbit lung model. We describe good qualitative agreement and quantitative correlation between the OCT data and video micrographs. Our main finding is the inflation and deflation of individual alveoli with noticeable hysteresis. Importantly, this three-dimensional geometry data can be extracted and converted into input data for numerical simulations.

  8. Concave microwell based size-controllable hepatosphere as a three-dimensional liver tissue model.

    PubMed

    Wong, Sau Fung; No, Da Yoon; Choi, Yoon Young; Kim, Dong Sik; Chung, Bong Geun; Lee, Sang-Hoon

    2011-11-01

    We have developed a size-controllable spheroidal hepatosphere and heterosphere model by mono-culturing of primary hepatocytes and by co-culturing primary hepatocytes and hepatic stellate cells (HSCs). We demonstrated that uniform-sized heterospheres, which self-aggregated from primary hepatocytes and HSCs, formed within concave microwell arrays in a rapid and homogeneous manner. The effect of HSCs was quantitatively and qualitatively investigated during spheroid formation, and HSC played an important role in controlling the organization of the spheroidal aggregates and formation of tight cell-cell contacts. An analysis of the metabolic function showed that heterospheres secreted 30% more albumin than hepatospheres on day 8. In contrast, the urea secretion from heterospheres was similar to that of hepatospheres. A quantitative cytochrome P450 assay showed that the enzymatic activity of heterospheres cultured for 9 days was higher as compared with primary hepatospheres. These size-controllable heterospheres could be mass-produced using concave plate and be useful for creating artificial three-dimensional hepatic tissue constructs and regeneration of failed liver. PMID:21813175

  9. Shape-Controlled Synthesis of Hybrid Nanomaterials via Three-Dimensional Hydrodynamic Focusing

    PubMed Central

    2015-01-01

    Shape-controlled synthesis of nanomaterials through a simple, continuous, and low-cost method is essential to nanomaterials research toward practical applications. Hydrodynamic focusing, with its advantages of simplicity, low-cost, and precise control over reaction conditions, has been used for nanomaterial synthesis. While most studies have focused on improving the uniformity and size control, few have addressed the potential of tuning the shape of the synthesized nanomaterials. Here we demonstrate a facile method to synthesize hybrid materials by three-dimensional hydrodynamic focusing (3D-HF). While keeping the flow rates of the reagents constant and changing only the flow rate of the buffer solution, the molar ratio of two reactants (i.e., tetrathiafulvalene (TTF) and HAuCl4) within the reaction zone varies. The synthesized TTF–Au hybrid materials possess very different and predictable morphologies. The reaction conditions at different buffer flow rates are studied through computational simulation, and the formation mechanisms of different structures are discussed. This simple one-step method to achieve continuous shape-tunable synthesis highlights the potential of 3D-HF in nanomaterials research. PMID:25268035

  10. Three-dimensional graphics simulator for testing mine machine computer-controlled algorithms -- phase 1 development

    SciTech Connect

    Ambrose, D.H. )

    1993-01-01

    Using three-dimensional (3-D) graphics computing to evaluate new technologies for computer-assisted mining systems illustrates how these visual techniques can redefine the way researchers look at raw scientific data. The US Bureau of Mines is using 3-D graphics computing to obtain cheaply, easily, and quickly information about the operation and design of current and proposed mechanical coal and metal-nonmetal mining systems. Bureau engineers developed a graphics simulator for a continuous miner that enables a realistic test for experimental software that controls the functions of a machine. Some of the specific simulated functions of the continuous miner are machine motion, appendage motion, machine position, and machine sensors. The simulator uses data files generated in the laboratory or mine using a computer-assisted mining machine. The data file contains information from a laser-based guidance system and a data acquisition system that records all control commands given to a computer-assisted mining machine. This report documents the first phase in developing the simulator and discusses simulator requirements, features of the initial simulator, and several examples of its application. During this endeavor, Bureau engineers discovered and appreciated the simulator's potential to assist their investigations of machine controls and navigation systems.

  11. Three-dimensional negative index of refraction at optical frequencies by coupling plasmonic waveguides.

    PubMed

    Verhagen, Ewold; de Waele, René; Kuipers, L; Polman, Albert

    2010-11-26

    We identify a route towards achieving a negative index of refraction at optical frequencies based on coupling between plasmonic waveguides that support backwards waves. We show how modal symmetry can be exploited in metal-dielectric waveguide pairs to achieve negative refraction of both phase and energy. Control of waveguide coupling yields a metamaterial consisting of a one-dimensional multilayer stack that exhibits an isotropic index of -1 at a free-space wavelength of 400 nm. The concepts developed here may inspire new low-loss metamaterial designs operating close to the metal plasma frequency. PMID:21231386

  12. Three-Dimensional Negative Index of Refraction at Optical Frequencies by Coupling Plasmonic Waveguides

    NASA Astrophysics Data System (ADS)

    Verhagen, Ewold; de Waele, René; Kuipers, L.; Polman, Albert

    2010-11-01

    We identify a route towards achieving a negative index of refraction at optical frequencies based on coupling between plasmonic waveguides that support backwards waves. We show how modal symmetry can be exploited in metal-dielectric waveguide pairs to achieve negative refraction of both phase and energy. Control of waveguide coupling yields a metamaterial consisting of a one-dimensional multilayer stack that exhibits an isotropic index of -1 at a free-space wavelength of 400 nm. The concepts developed here may inspire new low-loss metamaterial designs operating close to the metal plasma frequency.

  13. Image formation of holographic three-dimensional display based on spatial light modulator in paraxial optical systems

    NASA Astrophysics Data System (ADS)

    Li, Junchang; Lin, Yu-Chih; Tu, Han-Yen; Gui, Jinbin; Li, Chongguang; Lou, Yuli; Cheng, Chau-Jern

    2015-10-01

    This work describes the image formation and properties of holographic three-dimensional (3-D) display based on spatial light modulators (SLMs) combined with optical imaging systems. Existing pixelated SLMs with periodic mesh structures affect the holographic reconstruction and display properties. According to a holographic 3-D display architecture based on SLM in paraxial optical systems, this study applied the ray matrix optics and scalar diffraction theory to regard the light wave emitting from the holographic plane to the image plane as an optical system composed of four matrix elements. The image quality and depth of field (DOF) of the holographic 3-D display system are investigated, and the relationship between the impulse response and the matrix elements of the holographic imaging system is derived. In addition, the imaging properties and DOF are explored and verified through optical experimentation.

  14. 360-degree three-dimensional flat panel display using holographic optical elements

    NASA Astrophysics Data System (ADS)

    Yabu, Hirofumi; Takeuchi, Yusuke; Yoshimoto, Kayo; Takahashi, Hideya; Yamada, Kenji

    2015-03-01

    We proposed the 360-degree 3D display system which is composed of a flat panel display, a light control film, and holographic optical element (HOE). The HOE is a diffraction grating which is made by holography technique. HOE lens can be produced on the thin polygonal glass plate. The light control film and HOE lenses are used to control the direction of light from the flat panel display in our system. The size of proposed system depends on the size of the flat panel display is because other parts of proposed system are thin and placed on the screen of the flat panel display. HOE lenses and a light control film are used to control lights from multiple pixels of a flat panel display to multiple viewpoints. To display large 3D images and to increase viewpoints, we divided parallax images into striped images and distributed them on the display for multiple viewpoints. Therefore, observers can see the large 3D image around the system. To verify the effectiveness of the proposed system, we made the experimental system. To verify the effectiveness of the proposed system, we constructed the part of the proposed system. The experimental system is composed of the liquid crystal display (LCD), prototype HOE lenses, and light control films. We confirmed that experimental system can display two images to different viewpoints. This paper describes the configuration of the proposed system, and also describes the experimental result.

  15. Cell volume control at a surface for three-dimensional grid generation packages

    NASA Technical Reports Server (NTRS)

    Alter, Stephen J.; Weilmuenster, Kenneth J.

    1992-01-01

    An alternate method of calculating the cell size for orthogonality control in the solution of Poisson's 3D space equations is presented. The method provides the capability to enforce a better initial guess for the grid distribution required for boundary layer resolution. This grid point distribution is accomplished by enforcing grid spacing from a grid block boundary where orthogonality is required. The actual grid spacing or cell size for that boundary is determined by the two or four adjacent boundaries in the grid block definition, which are two dimensional grids. These two dimensional grids are in turn defined by the user using insight into the flow field and boundary layer characteristics. The adjoining boundaries are extended using a multifunctional blending scheme, with user control of the blending and interpolating functions to be used. This grid generation procedure results in an enhanced computational fluid dynamics calculation by allowing a quicker resolution of the configuration's boundary layer and flow field and by limiting the number of grid re-adaptations. The cell size specification calculation was applied to a variety of configurations ranging from axisymmetric to complex three-dimensional configurations. Representative grids are shown for the Space Shuttle and the Langley Lifting Body (HL-20).

  16. UAV formation control design with obstacle avoidance in dynamic three-dimensional environment.

    PubMed

    Chang, Kai; Xia, Yuanqing; Huang, Kaoli

    2016-01-01

    This paper considers the artificial potential field method combined with rotational vectors for a general problem of multi-unmanned aerial vehicle (UAV) systems tracking a moving target in dynamic three-dimensional environment. An attractive potential field is generated between the leader and the target. It drives the leader to track the target based on the relative position of them. The other UAVs in the formation are controlled to follow the leader by the attractive control force. The repulsive force affects among the UAVs to avoid collisions and distribute the UAVs evenly on the spherical surface whose center is the leader-UAV. Specific orders or positions of the UAVs are not required. The trajectories of avoidance obstacle can be obtained through two kinds of potential field with rotation vectors. Every UAV can choose the optimal trajectory to avoid the obstacle and reconfigure the formation after passing the obstacle. Simulations study on UAV are presented to demonstrate the effectiveness of proposed method. PMID:27478741

  17. Three Dimensional Solution of Pneumatic Active Control of Forebody Vortex Asymmetry

    NASA Technical Reports Server (NTRS)

    Kandil, Osama A.; SharafEl-Din, Hazem H.; Liu, C. H.

    1995-01-01

    Pneumatic active control of asymmetric vortical flows around a slender pointed forebody is investigated using the three dimensional solution for the compressible thin-layer Navier-Stokes equation. The computational applications cover the normal and tangential injection control of asymmetric flows around a 5 degree semi-apex angle cone at a 40 degree angle of attack, 1.4 freestream Mach number and 6 x 10(exp 6) freestream Reynolds number (based on the cone length). The effective tangential angle range of 67.5 approaches minus 67.5 degrees is used for both normal and tangential ports of injection. The effective axial length of injection is varied from 0.03 to 0.05. The computational solver uses the implicit, upwind, flux difference splitting finite volume scheme, and the grid consists of 161 x 55 x 65 points in the wrap around, normal and axial directions, respectively. The results show that tangential injection is more effective than normal injection.

  18. Controlling collagen fiber microstructure in three-dimensional hydrogels using ultrasound

    PubMed Central

    Garvin, Kelley A.; VanderBurgh, Jacob; Hocking, Denise C.; Dalecki, Diane

    2013-01-01

    Type I collagen is the primary fibrillar component of the extracellular matrix, and functional properties of collagen arise from variations in fiber structure. This study investigated the ability of ultrasound to control collagen microstructure during hydrogel fabrication. Under appropriate conditions, ultrasound exposure of type I collagen during polymerization altered fiber microstructure. Scanning electron microscopy and second-harmonic generation microscopy revealed decreased collagen fiber diameters in response to ultrasound compared to sham-exposed samples. Results of mechanistic investigations were consistent with a thermal mechanism for the effects of ultrasound on collagen fiber structure. To control collagen microstructure site-specifically, a high frequency, 8.3-MHz, ultrasound beam was directed within the center of a large collagen sample producing dense networks of short, thin collagen fibrils within the central core of the gel and longer, thicker fibers outside the beam area. Fibroblasts seeded onto these gels migrated rapidly into small, circularly arranged aggregates only within the beam area, and clustered fibroblasts remodeled the central, ultrasound-exposed collagen fibrils into dense sheets. These investigations demonstrate the capability of ultrasound to spatially pattern various collagen microstructures within an engineered tissue noninvasively, thus enhancing the level of complexity of extracellular matrix microenvironments and cellular functions achievable within three-dimensional engineered tissues. PMID:23927189

  19. Three-dimensional optical digitizer system: working with white light for the manufacturing industry

    NASA Astrophysics Data System (ADS)

    Rodriguez-Larena, Jorge; Canal Bienzobas, Fernando; Campos, Fernando

    1999-11-01

    In this work, an optical system for digitizing 3D objects by using structured light is described. It is fast, contactless, highly accurate and it can work in strongly illuminated environments. An application for an industrial quality control set-up is presented, in which sand cores to be used in the car industry are automatically handled by a robot and analyzed by the 3D digitizer. After the analysis of each core presented by the robot, the digitizer sends an OK or KO instruction for the faultless or faulty piece to be placed by the robot in a different area. In order to perform all the calculations required for the analysis and for the hardware control, a specific software has been developed. A series of examples and result are shown with comments on the advantages of the method here described.

  20. Modeling, Control and Simulation of Three-Dimensional Robotic Systems with Applications to Biped Locomotion.

    NASA Astrophysics Data System (ADS)

    Zheng, Yuan-Fang

    A three-dimensional, five link biped system is established. Newton-Euler state space formulation is employed to derive the equations of the system. The constraint forces involved in the equations can be eliminated by projection onto a smaller state space system for deriving advanced control laws. A model-referenced adaptive control scheme is developed to control the system. Digital computer simulations of point to point movement are carried out to show that the model-referenced adaptive control increases the dynamic range and speeds up the response of the system in comparison with linear and nonlinear feedback control. Further, the implementation of the controller is simpler. Impact effects of biped contact with the environment are modeled and studied. The instant velocity change at the moment of impact is derived as a function of the biped state and contact speed. The effects of impact on the state, as well as constraints are studied in biped landing on heels and toes simultaneously or on toes first. Rate and nonlinear position feedback are employed for stability of the biped after the impact. The complex structure of the foot is properly modeled. A spring and dashpot pair is suggested to represent the action of plantar fascia during the impact. This action prevents the arch of the foot from collapsing. A mathematical model of the skeletal muscle is discussed. A direct relationship between the stimulus rate and the active state is established. A piecewise linear relation between the length of the contractile element and the isometric force is considered. Hill's characteristic equation is maintained for determining the actual output force during different shortening velocities. A physical threshold model is proposed for recruitment which encompasses the size principle, its manifestations and exceptions to the size principle. Finally the role of spindle feedback in stability of the model is demonstrated by study of a pair of muscles.

  1. Incomplete optical shielding in cold atom traps: three-dimensional Landau-Zener theory

    SciTech Connect

    Yurovsky, V.A.; Ben-Reuven, A.

    1997-05-01

    Ultracold atom collisions in the presence of a linearly polarized blueshifted laser field are studied theoretically. An analytical solution is presented within the framework of the Landau-Zener approximation. The effect of incomplete shielding is mostly accounted for by incorporating the three-dimensional character of the collisions, using a partial-wave analysis with space degeneracy. A model of two electronic states, including effects of indistinguishability of the colliding atoms, is used. The model associates the incomplete shielding with a process involving two crossing points. The theory is applied to the case of metastable xenon traps, obtaining a fair agreement with the experimental data. {copyright} {ital 1997} {ital The American Physical Society}

  2. Three-dimensional cavity cooling and trapping in an optical lattice

    SciTech Connect

    Murr, K.; Nussmann, S.; Puppe, T.; Hijlkema, M.; Weber, B.; Webster, S. C.; Kuhn, A.; Rempe, G.

    2006-06-15

    A robust scheme for trapping and cooling atoms is described. It combines a deep dipole-trap which localizes the atom in the center of a cavity with a laser directly exciting the atom. In that way one obtains three-dimensional cooling while the atom is dipole-trapped. In particular, we identify a cooling force along the large spatial modulations of the trap. A feature of this setup, with respect to a dipole trap alone, is that all cooling forces keep a constant amplitude if the trap depth is increased simultaneously with the intensity of the probe laser. No strong coupling is required, which makes such a technique experimentally attractive. Several analytical expressions for the cooling forces and heating rates are derived and interpreted by analogy to ordinary laser cooling.

  3. Three-dimensional light distribution near the focus of a tightly focused beam of few-cycle optical pulses

    SciTech Connect

    Romallosa, Kristine Marie; Bantang, Johnrob; Saloma, Caesar

    2003-09-01

    Via the Richards-Wolf vector diffraction theory, we analyze the three-dimensional intensity distribution of the focal volume that is produced by a strongly focused 750-nm beam of ultrafast, Gaussian-shaped optical pulses (10{sup -9} s{>=} pulse width {tau}{>=}1 fs=10{sup -15} s). Knowledge of the three-dimensional distribution near focus is essential in determining the diffraction-limited resolution of an optical microscope. The optical spectrum of a short pulse is characterized by side frequencies about the carrier frequency. The effect of spectral broadening on the focused intensity distribution is evaluated via the Linfoot's criteria of fidelity, structural content, and correlation quality and with reference to a 750-nm cw focused beam. Different values are considered for {tau} and numerical aperture of the focusing lens (0.1{<=}X{sub NA}{<=}1.2). At X{sub NA}=0.8, rapid deterioration of the focused intensity distribution is observed at {tau}=1.2 fs. This happens because a 750-nm optical pulse with {tau}=1.2 fs has an associated coherence length of 359.7 nm which is less than the Nyquist sampling interval of 375 nm that is required to sample 750 nm sinusoid without loss of information. The ill-effects of spectral broadening is weaker in two-photon excitation microscope than in its single-photon counterpart for the same focusing lens and light source.

  4. Stiffness-controlled three-dimensional extracellular matrices for high-resolution imaging of cell behavior

    PubMed Central

    Fischer, Robert S; Myers, Kenneth A; Gardel, Margaret L; Waterman, Clare M

    2013-01-01

    Regulation of cell functions by the physical properties of the extracellular matrix (ECM) has emerged as a crucial contributor to development and disease. Two specific physical properties of the ECM, stiffness and dimensionality, each influence cell signaling and function. As these ECM physical properties are linked to other properties that also regulate cell behavior, e.g., integrin ligand density, parsing the specific contributions of ECM stiffness and dimensionality has proven difficult. Here we detail a simple protocol, which can be completed in 1–2 d, for combining three-dimensional (3D) ECM engagement with controlled underlying ECM stiffness. In these ‘sandwich gels’, cells are sandwiched between a 3D fibrillar ECM and an ECM-coupled polyacrylamide gel of defined compliance, allowing the study of the specific effects of ECM compliance on cell function in physiologically relevant 3D ECMs. This type of system enables high-resolution time-lapse imaging and is suitable for a wide range of cell types and molecular perturbations. PMID:23099487

  5. Formation of Spatially and Geometrically Controlled Three-Dimensional Tissues in Soft Gels by Sacrificial Micromolding

    PubMed Central

    Cerchiari, Alec; Garbe, James C.; Todhunter, Michael E.; Jee, Noel Y.; Pinney, James R.; LaBarge, Mark A.

    2015-01-01

    Patterned three-dimensional (3D) cell culture models aim to more accurately represent the in vivo architecture of a tissue for the purposes of testing drugs, studying multicellular biology, or engineering functional tissues. However, patterning 3D multicellular structures within very soft hydrogels (<500 Pa) that mimic the physicochemical environment of many tissues remains a challenge for existing methods. To overcome this challenge, we use a Sacrificial Micromolding technique to temporarily form spatially and geometrically defined 3D cell aggregates in degradable scaffolds before transferring and culturing them in a reconstituted extracellular matrix. Herein, we demonstrate that Sacrificial Micromolding (1) promotes cyst formation and proper polarization of established epithelial cell lines, (2) allows reconstitution of heterotypic cell–cell interactions in multicomponent epithelia, and (3) can be used to control the lumenization-state of epithelial cysts as a function of tissue size. In addition, we discuss the potential of Sacrificial Micromolding as a cell-patterning tool for future studies. PMID:25351430

  6. Three-dimensional controlled-source electromagnetic and magnetotelluric joint inversion

    NASA Astrophysics Data System (ADS)

    Commer, Michael; Newman, Gregory A.

    2009-09-01

    The growing use of the controlled-source electromagnetic method (CSEM) and magnetotellurics (MT) for exploration applications has been driving the development of data acquisition technologies, and three-dimensional (3-D) modelling and imaging techniques. However, targeting increasingly complex geological environments also further enhances the problems inherent in large-scale inversion, such as non-uniqueness and resolution issues. In this paper, we report on two techniques to mitigate these problems. We use 3-D joint CSEM and MT inversion to improve the model resolution. To avoid the suppression of the resolution capacities of one data type, and thus to balance the use of inherent, and ideally complementary information content, different data reweighting schemes are proposed. Further, a hybrid model parametrization approach is presented, where traditional cell-based model parameters are used simultaneously within a parametric inversion. The idea is to limit the non-uniqueness problem, typical for 3-D imaging problems, in order to allow for a more focusing inversion. The methods are demonstrated using synthetic data generated from models with a strong practical relevance.

  7. Three-dimensional controlled-source electromagnetic and magnetotelluric joint inversion

    NASA Astrophysics Data System (ADS)

    Commer, M.; Newman, G. A.

    2009-12-01

    The growing use of the controlled-source electromagnetic method (CSEM) and magnetotellurics (MT) for exploration applications has been driving the development of data acquisition technologies, and three-dimensional (3D) modeling and imaging techniques. However, targeting increasingly complex geological environments also further enhances the problems inherent in large-scale inversion, such as non-uniqueness and resolution issues. In this paper, we report on two techniques to mitigate these problems. We use 3D joint CSEM and MT inversion to improve the model resolution. To avoid the suppression of the resolution capacities of one data type, and thus to balance the use of inherent, and ideally complementary information content, different data re-weighting schemes are proposed. Further, a hybrid model parametrization approach is presented, where traditional cell-based model parameters are used simultaneously within a parametric inversion. The idea is to limit the non-uniqueness problem, typical for 3D imaging problems, in order to allow for a more focusing inversion. The methods are demonstrated using synthetic data generated from models with a strong practical relevance.

  8. Large-range Control of the Microstructures and Properties of Three-dimensional Porous Graphene

    PubMed Central

    Xie, Xiao; Zhou, Yilong; Bi, Hengchang; Yin, Kuibo; Wan, Shu; Sun, Litao

    2013-01-01

    Graphene-based three-dimensional porous macrostructures are believed of great importance in various applications, e.g. supercapacitors, photovoltaic cells, sensors and high-efficiency sorbents. However, to precisely control the microstructures and properties of this material to meet different application requirements in industrial practice remains challenging. We herein propose a facile and highly effective strategy for large-range tailoring the porous architecture and its properties by a modified freeze casting process. The pore sizes and wall thicknesses of the porous graphene can be gradually tuned by 80 times (from 10 to 800 μm) and 4000 times (from 20 nm to 80 μm), respectively. The property experiences the changing from hydrophilic to hydrophobic, with the Young's Modulus varying by 15 times. The fundamental principle of the porous microstructure evolution is discussed in detail. Our results demonstrate a very convenient and general protocol to finely tailor the structure and further benefit the various applications of porous graphene. PMID:23817081

  9. Stiffness-controlled three-dimensional extracellular matrices for high-resolution imaging of cell behavior.

    PubMed

    Fischer, Robert S; Myers, Kenneth A; Gardel, Margaret L; Waterman, Clare M

    2012-11-01

    Regulation of cell functions by the physical properties of the extracellular matrix (ECM) has emerged as a crucial contributor to development and disease. Two specific physical properties of the ECM, stiffness and dimensionality, each influence cell signaling and function. As these ECM physical properties are linked to other properties that also regulate cell behavior, e.g., integrin ligand density, parsing the specific contributions of ECM stiffness and dimensionality has proven difficult. Here we detail a simple protocol, which can be completed in 1-2 d, for combining three-dimensional (3D) ECM engagement with controlled underlying ECM stiffness. In these 'sandwich gels', cells are sandwiched between a 3D fibrillar ECM and an ECM-coupled polyacrylamide gel of defined compliance, allowing the study of the specific effects of ECM compliance on cell function in physiologically relevant 3D ECMs. This type of system enables high-resolution time-lapse imaging and is suitable for a wide range of cell types and molecular perturbations. PMID:23099487

  10. Three-dimensional controlled-source electromagnetic and magnetotelluric joint inversion

    SciTech Connect

    Commer, M.; Newman, G.A.

    2009-02-15

    The growing use of the controlled-source electromagnetic method (CSEM) and magnetotellurics (MT) for exploration applications has been driving the development of data acquisition technologies, and three-dimensional (3-D) modeling and imaging techniques. However, targeting increasingly complex geological environments also further enhances the problems inherent in large-scale inversion, such as non-uniqueness and resolution issues. In this paper, we report on two techniques to mitigate these problems. We use 3-D joint CSEM and MT inversion to improve the model resolution. To avoid the suppression of the resolution capacities of one data type, and thus to balance the use of inherent, and ideally complementary information content, different data reweighting schemes are proposed. Further, a hybrid model parameterization approach is presented, where traditional cell-based model parameters are used simultaneously within a parametric inversion. The idea is to limit the non-uniqueness problem, typical for 3-D imaging problems, in order to allow for a more focusing inversion. The methods are demonstrated using synthetic data generated from models with a strong practical relevance.

  11. Semiconductor nanomembrane tubes: three-dimensional confinement for controlled neurite outgrowth.

    PubMed

    Yu, Minrui; Huang, Yu; Ballweg, Jason; Shin, Hyuncheol; Huang, Minghuang; Savage, Donald E; Lagally, Max G; Dent, Erik W; Blick, Robert H; Williams, Justin C

    2011-04-26

    In many neural culture studies, neurite migration on a flat, open surface does not reflect the three-dimensional (3D) microenvironment in vivo. With that in mind, we fabricated arrays of semiconductor tubes using strained silicon (Si) and germanium (Ge) nanomembranes and employed them as a cell culture substrate for primary cortical neurons. Our experiments show that the SiGe substrate and the tube fabrication process are biologically viable for neuron cells. We also observe that neurons are attracted by the tube topography, even in the absence of adhesion factors, and can be guided to pass through the tubes during outgrowth. Coupled with selective seeding of individual neurons close to the tube opening, growth within a tube can be limited to a single axon. Furthermore, the tube feature resembles the natural myelin, both physically and electrically, and it is possible to control the tube diameter to be close to that of an axon, providing a confined 3D contact with the axon membrane and potentially insulating it from the extracellular solution. PMID:21366271

  12. Three-dimensional reconstruction of paramecium primaurelia oral apparatus through confocal laser scanning optical microscopy

    NASA Astrophysics Data System (ADS)

    Beltrame, Francesco; Ramoino, Paola; Fato, Marco; Delmonte Corrado, Maria U.; Marcenaro, Giampiero; Crippa Franceschi, Tina

    1992-06-01

    Studies on the complementary mating types of Paramecium primaurelia (Protozoa, Ciliates) have shown that cell lines which differ from each other in mating type expression are characterized by different cell contents, organization, and physiology. Referring to these differences and to the differential rates of food vacuole formation, oral apparatuses of the two mating type cells are assumed to possibly differ from each other in some traits, such as, for instance, in their lengths. In our work, the highly organized oral structures are analyzed by means of a laser scanning confocal optical microscope (CLSM), which provides their 3-D visualization and measurement. The extraction of the 3-D intrinsic information related to the biological objects under investigation can be in turn related to their functional state, according to the classical paradigm of structure to function relationships identification. In our experiments, we acquired different data sets. These are optical slices of the biological sample under investigation, acquired in a confocal situation, through epi-illumination, in reflection, and, for comparison with conventional microscopy, 2-D images acquired via a standard TV camera coupled to the microscope itself. Our CLSM system is equipped with a laser beam at 488 and 514 nm and the data have been acquired with various steps of optical slicing, ranging from .04 to .25 micrometers. The volumes obtained by piling-up the slices are rendered through different techniques, some of them directly implemented on the workstation controlling the CLSM system, some of them on a SUN SPARC station 1, where the original data were transferred via an Ethernet link. In this last instance, original software has been developed for the visualization and animation of the 3-D structures, running under UNIX and X-Window, according to a ray-tracing algorithm.

  13. Molecular mechanisms controlling vascular lumen formation in three-dimensional extracellular matrices.

    PubMed

    Sacharidou, Anastasia; Stratman, Amber N; Davis, George E

    2012-01-01

    Considerable progress has been made toward a molecular understanding of how cells form lumen and tube structures in three-dimensional (3D) extracellular matrices (ECM). This progress has occurred through work performed with endothelial and epithelial cell models using both in vitro and in vivo approaches. Despite the apparent similarities between endothelial and epithelial cell lumen and tube formation mechanisms, there are clear distinctions that directly relate to their functional differences. This review will focus on endothelial cell (EC) lumen formation mechanisms which control blood vessel formation during development and postnatal life. Of great interest is that an EC lumen signaling complex has been identified which controls human EC lumen and tube formation in 3D matrices and which coordinates integrin-ECM contacts, cell surface proteolysis, cytoskeletal rearrangements, and cell polarity. This complex consists of the collagen-binding integrin α2β1, the collagen-degrading membrane-type 1 matrix metalloproteinase (MT1-MMP), junction adhesion molecule (Jam)C, JamB, polarity proteins Par3 and Par6b, and the Rho GTPase Cdc42-GTP. These interacting proteins are necessary to stimulate 3D matrix-specific signaling events (including activation of protein kinase cascades that regulate the actin and microtubule cytoskeletons) to control the formation of EC lumens and tube networks. Also, EC lumen formation is directly coupled to the generation of vascular guidance tunnels, enzymatically generated ECM conduits that facilitate EC tube remodeling and maturation. Mural cells such as pericytes are recruited along EC tubes within these tunnel spaces to control ECM remodeling events resulting in vascular basement membrane matrix assembly, a key step in tube maturation and stabilization. PMID:21997121

  14. SPIRALING OUT OF CONTROL: THREE-DIMENSIONAL HYDRODYNAMICAL MODELING OF THE COLLIDING WINDS IN {eta} CARINAE

    SciTech Connect

    Parkin, E. R.; Pittard, J. M.; Corcoran, M. F.; Hamaguchi, K.

    2011-01-10

    Three-dimensional adaptive mesh refinement hydrodynamical simulations of the wind-wind collision between the enigmatic supermassive star {eta} Car and its mysterious companion star are presented which include radiative driving of the stellar winds, gravity, optically thin radiative cooling, and orbital motion. Simulations with static stars with a periastron passage separation reveal that the preshock companion star's wind speed is sufficiently reduced so that radiative cooling in the postshock gas becomes important, permitting the runaway growth of nonlinear thin-shell instabilities (NTSIs) which massively distort the wind-wind collision region (WCR). However, large-scale simulations, which include the orbital motion of the stars, show that orbital motion reduces the impact of radiative inhibition and thus increases the acquired preshock velocities. As such, the postshock gas temperature and cooling time see a commensurate increase, and sufficient gas pressure is preserved to stabilize the WCR against catastrophic instability growth. We then compute synthetic X-ray spectra and light curves and find that, compared to previous models, the X-ray spectra agree much better with XMM-Newton observations just prior to periastron. The narrow width of the 2009 X-ray minimum can also be reproduced. However, the models fail to reproduce the extended X-ray minimum from previous cycles. We conclude that the key to explaining the extended X-ray minimum is the rate of cooling of the companion star's postshock wind. If cooling is rapid then powerful NTSIs will heavily disrupt the WCR. Radiative inhibition of the companion star's preshock wind, albeit with a stronger radiation-wind coupling than explored in this work, could be an effective trigger.

  15. A fast multispectral diffuse optical tomography system for in vivo three-dimensional imaging of seizure dynamics

    PubMed Central

    Yang, Jianjun; Zhang, Tao; Yang, Hao; Jiang, Huabei

    2013-01-01

    We describe a multispectral continuous-wave diffuse optical tomography (DOT) system that can be used for in vivo three-dimensional (3-D) imaging of seizure dynamics. Fast 3-D data acquisition is realized through a time multiplexing approach based on a parallel lighting configuration - our system can achieve 0.12ms per source per wavelength and up to 14Hz sampling rate for a full set of data for 3-D DOT image reconstruction. The system is validated using both static and dynamic tissue-like phantoms. An initial in vivo experiment using a rat model of seizure is also demonstrated. PMID:22695584

  16. Reconstruction of mechanically recorded sound from an edison cylinder using three dimensional non-contact optical surface metrology

    SciTech Connect

    Fadeyev, V.; Haber, C.; Maul, C.; McBride, J.W.; Golden, M.

    2004-04-20

    Audio information stored in the undulations of grooves in a medium such as a phonograph disc record or cylinder may be reconstructed, without contact, by measuring the groove shape using precision optical metrology methods and digital image processing. The viability of this approach was recently demonstrated on a 78 rpm shellac disc using two dimensional image acquisition and analysis methods. The present work reports the first three dimensional reconstruction of mechanically recorded sound. The source material, a celluloid cylinder, was scanned using color coded confocal microscopy techniques and resulted in a faithful playback of the recorded information.

  17. Three-dimensional functional imaging of lung parenchyma using optical coherence tomography combined with confocal fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Gaertner, Maria; Cimalla, Peter; Knels, Lilla; Meissner, Sven; Koch, Edmund

    2011-03-01

    Optical coherence tomography (OCT), as a non-invasive technique for studying tissue morphology, is widely used in in vivo studies, requiring high resolution and fast three-dimensional imaging. Based on light scattering it reveals micrometer sized substructures of the samples due to changes in their optical properties and therefore allows quantification of the specimen's geometry. Utilizing fluorescence microscopy further information can be obtained from molecular compositions embedded in the investigated object. Fluorescent markers, specifically binding to the substance of interest, reveal the sample's chemical structure and give rise to functional studies. This research presents the application of a combined OCT and laser scanning confocal microscopy (LSCM) system to investigate structural details in lung tissue. OCT reveals the three-dimensional morphology of the alveoli whereas fluorescence detection, arising from the fluorophore Sulforhodamin B (SRB) which is binding to elastin, shows the elastic meshwork of the organs extracellular matrix. Different plains of fluorescence can be obtained by using a piezo driven objective and exploiting the confocal functionality of the setup. Both techniques combined in one optical system not only ease the experimental procedure but also contribute to a thorough description of tissue's morphology and chemical composition.

  18. Optical properties of chiral three-dimensional plasmonic oligomers at the onset of charge-transfer plasmons.

    PubMed

    Hentschel, Mario; Wu, Lin; Schäferling, Martin; Bai, Ping; Li, Er Ping; Giessen, Harald

    2012-11-27

    We demonstrate strong chiral optical response in three-dimensional chiral nanoparticle oligomers in the wavelength regime between 700 and 3500 nm. We show in experiment and simulation that this broad-band response occurs at the onset of charge transfer between the individual nanoparticles. The ohmic contact causes a strong red shift of the fundamental mode, while the geometrical shape of the resulting fused particles still allows for an efficient excitation of higher order modes. Calculated spectra and field distributions confirm our interpretation and show a number of interacting plasmonic modes. Our results deepen the understanding of the chiral optical response in complex chiral plasmonic nanostructures and pave the road toward broad-band chiral optical devices with strong responses, for example, for chiral plasmon rulers or sensing applications. PMID:23078518

  19. Identification of muscle necrosis in the mdx mouse model of Duchenne muscular dystrophy using three-dimensional optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Klyen, Blake R.; Shavlakadze, Thea; Radley-Crabb, Hannah G.; Grounds, Miranda D.; Sampson, David D.

    2011-07-01

    Three-dimensional optical coherence tomography (3D-OCT) was used to image the structure and pathology of skeletal muscle tissue from the treadmill-exercised mdx mouse model of human Duchenne muscular dystrophy. Optical coherence tomography (OCT) images of excised muscle samples were compared with co-registered hematoxylin and eosin-stained and Evans blue dye fluorescence histology. We show, for the first time, structural 3D-OCT images of skeletal muscle dystropathology well correlated with co-located histology. OCT could identify morphological features of interest and necrotic lesions within the muscle tissue samples based on intrinsic optical contrast. These findings demonstrate the utility of 3D-OCT for the evaluation of small-animal skeletal muscle morphology and pathology, particularly for studies of mouse models of muscular dystrophy.

  20. Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography

    PubMed Central

    Shemonski, Nathan D.; Ahn, Shawn S.; Liu, Yuan-Zhi; South, Fredrick A.; Carney, P. Scott; Boppart, Stephen A.

    2014-01-01

    Over the years, many computed optical interferometric techniques have been developed to perform high-resolution volumetric tomography. By utilizing the phase and amplitude information provided with interferometric detection, post-acquisition corrections for defocus and optical aberrations can be performed. The introduction of the phase, though, can dramatically increase the sensitivity to motion (most prominently along the optical axis). In this paper, we present two algorithms which, together, can correct for motion in all three dimensions with enough accuracy for defocus and aberration correction in computed optical interferometric tomography. The first algorithm utilizes phase differences within the acquired data to correct for motion along the optical axis. The second algorithm utilizes the addition of a speckle tracking system using temporally- and spatially-coherent illumination to measure motion orthogonal to the optical axis. The use of coherent illumination allows for high-contrast speckle patterns even when imaging apparently uniform samples or when highly aberrated beams cannot be avoided. PMID:25574426

  1. An optical profilometer for spatial characterization of three-dimensional surfaces

    NASA Technical Reports Server (NTRS)

    Kelly, W. L., IV; Burcher, E. E.; Skolaut, M. W., Jr.

    1977-01-01

    The design concept and system operation of an optical profilometer are discussed, and a preliminary evaluation of a breadboard system is presented to demonstrate the feasibility of the optical profilometer technique. Measurement results are presented for several test surfaces; and to illustrate a typical application, results are shown for a cleft palate cast used by dental surgeons. Finally, recommendations are made for future development of the optical profilometer technique for specific engineering or scientific applications.

  2. Three-dimensional STED microscopy of aberrating tissue using dual adaptive optics.

    PubMed

    Patton, Brian R; Burke, Daniel; Owald, David; Gould, Travis J; Bewersdorf, Joerg; Booth, Martin J

    2016-04-18

    When imaging through tissue, the optical inhomogeneities of the sample generate aberrations that can prevent effective Stimulated Emission Depletion (STED) imaging. This is particularly problematic for 3D-enhanced STED. We present here an adaptive optics implementation that incorporates two adaptive optic elements to enable correction in all beam paths, allowing performance improvement in thick tissue samples. We use this to demonstrate 3D STED imaging of complex structures in Drosophila melanogaster brains. PMID:27137319

  3. Simulated Three-Dimensional Computer Graphics Training Display for Air Weapons Controllers. Final Report.

    ERIC Educational Resources Information Center

    Finegold, Lawrence S.; And Others

    The research and development project demonstrated the viability of a simulated training system to address training issues related to three-dimensional air intercept tactics and geometry, and resulted in the production of two videotapes for use in the United States Air Force Interceptor Weapons School. An introduction discusses the overall…

  4. Optical propagation within a three-dimensional shadowed atmosphere-ocean field: application to large deployment structures.

    PubMed

    Doyle, John P; Zibordi, Giuseppe

    2002-07-20

    Estimation of optical shadowing effects that occur on in situ submerged radiance and irradiance measurements conducted in the proximity of a large and complex three-dimensional deployment structure is addressed by use of Monte Carlo simulations. We have applied backward Monte Carlo techniques and variance reduction schemes in three-dimensional radiative transfer computations of in-water light field perturbations by taking into account relevant geometric, environmental, and optical parameters that describe a realistic atmosphere-ocean system. Significant parameters, determined by a sensitivity analysis study, have then been systematically varied for the computation of an extensive set of correction factors, included in look-up tables designed for operational removal of tower-shading uncertainties, which typically induce an approximately 1-10% decrease in absolute radiometric data values near a specific oceanographic tower located in the northern Adriatic Sea. In principle, the proposed correction methodology can be transferred to other deployment systems, instrument casings, and measurement sites if a comprehensive description is provided for the system parameters and their variability. PMID:12148756

  5. Theoretical, experimental and numerical methods for investigating the characteristics of laser radiation scattered in the integrated-optical waveguide with three-dimensional irregularities

    SciTech Connect

    Egorov, Alexander A

    2011-07-31

    We consider theoretical, experimental and numerical methods which make it possible to analyse the key characteristics of laser radiation scattered in the integrated-optical waveguide with three-dimensional irregularities. The main aspects of the three-dimensional vector electrodynamic problem of waveguide scattering are studied. The waveguide light scattering method is presented and its main advantages over the methods of single scattering of laser radiation are discussed. The experimental setup and results of measurements are described. Theoretical and experimental results confirming the validity of the vector theory of three-dimensional waveguide scattering of laser radiation developed by the author are compared for the first time. (fiber and integrated optics)

  6. Generation of three-dimensional optical structures by dynamic holograms displayed on a twisted nematic liquid crystal display

    NASA Astrophysics Data System (ADS)

    Ma, Baiheng; Yao, Baoli; Li, Ze; Lei, Ming; Yan, Shaohui; Gao, Peng; Dan, Dan; Ye, Tong

    2013-03-01

    Reconstruction of computer generated holograms (CGHs) addressed on a spatial light modulator (SLM) is an effective way to dynamically generate designed light field distributions. Based on the classic Gerchberg-Saxton (GS) algorithm, we proposed a technique, which can greatly reduce the computation cost to about 60 % in calculating CGHs for three-dimensional (3D) structures but with little degradation of reconstructed light field compared with the classic GS algorithm. The CGHs calculated by our method were displayed on a twisted nematic liquid crystal display, working as a phase-only-modulation SLM, and 3D structures of optical fields, e.g., 3D array of optical traps and vortices, were reconstructed with high efficiency and high quality. Besides, the possibility for 3D holographic display or projection was also demonstrated with this algorithm by reconstruction several images simultaneously in distinct axial planes.

  7. Two- and three-dimensional optical tomography of finger joints for diagnostics of rheumatoid arthritis

    NASA Astrophysics Data System (ADS)

    Klose, Alexander D.; Hielscher, Andreas H.; Hanson, Kenneth M.; Beuthan, Juergen

    1998-12-01

    Rheumatoid arthritis (RA) is one of the most common diseases of human joints. This progressive disease is characterized by an inflammation process that originates in the inner membrane (synovalis) of the capsule and spreads to other parts of the joint. In early stages the synovalis thickness and the permeability of this membrane changes. This leads to changes in the optical parameters of the synovalis and the synovial fluid (synovia), which occupies the space between the bones. The synovia changes from a clear yellowish fluid to a turbid grayish substance. In this work we present 2 and 3-dimensional reconstruction schemes for optical tomography of the finger joints. Our reconstruction algorithm is based on the diffusion approximation and employs adjoint differentiation techniques for the gradient calculation of the objective function with respect to the spatial distribution of optical properties. In this way, the spatial distribution of optical properties within the joints is reconstructed with high efficiency and precision. Volume information concerning the synovial space and the capsula are provided. Furthermore, it is shown that small changes of the scattering coefficients can be monitored. Therefore, optical tomography has the potential of becoming a useful tool for the early diagnosis and monitoring of disease progression in RA.

  8. Three-dimensional quasi-conformal transformation optics through numerical optimization.

    PubMed

    Junqueira, Mateus A F C; Gabrielli, Lucas H; Beltrán-Mejía, Felipe; Spadoti, Danilo H

    2016-07-25

    In this paper we demonstrate the possibility to achieve 3-dimensional quasi-conformal transformation optics through parametrization and numerical optimization without using sliding boundary conditions. The proposed technique, which uses a quasi-Newton method, is validated in two cylindrical waveguide bends as design examples. Our results indicate an arbitrarily small average anisotropy can be achieved in 3D transformation optics as the number of degrees of freedom provided by the parametrization was increased. The waveguide simulations confirm modal preservation when the residual anisotropy is neglected. PMID:27464099

  9. Elevating optical activity: Efficient on-edge lithography of three-dimensional starfish metamaterial

    SciTech Connect

    Dietrich, K. Menzel, C.; Lehr, D.; Puffky, O.; Pertsch, T.; Tünnermann, A.; Kley, E.-B.; Hübner, U.

    2014-05-12

    We present an approach for extremely fast, wafer-scale fabrication of chiral starfish metamaterials based on electron beam- and on-edge lithography. A millimeter sized array of both the planar chiral and the true 3D chiral starfish is realized, and their chiroptical performances are compared by circular dichroism measurements. We find optical activity in the visible and near-infrared spectral range, where the 3D starfish clearly outperforms the planar design by almost 2 orders of magnitude, though fabrication efforts are only moderately increased. The presented approach is capable of bridging the gap between high performance optical chiral metamaterials and industrial production by nanoimprint technology.

  10. Modeling three-dimensional velocity-to-position transformation in oculomotor control.

    PubMed

    Schnabolk, C; Raphan, T

    1994-02-01

    1. A considerable amount of attention has been devoted to understanding the velocity-position transformation that takes place in the control of eye movements in three dimensions. Much of the work has focused on the idea that rotations in three dimensions do not commute and that a "multiplicative quaternion model" of velocity-position integration is necessary to explain eye movements in three dimensions. Our study has indicated that this approach is not consistent with the physiology of the types of signals necessary to rotate the eyes. 2. We developed a three-dimensional dynamical system model for movement of the eye within its surrounding orbital tissue. The main point of the model is that the eye muscles generate torque to rotate the eye. When the eye reaches an orientation such that the restoring torque of the orbital tissue counterbalances the torque applied by the muscles, a unique equilibrium point is reached. The trajectory of the eye to reach equilibrium may follow any path, depending on the starting eye orientation and eye velocity. However, according to Euler's theorem, the equilibrium reached is equivalent to a rotation about a fixed axis through some angle from a primary orientation. This represents the shortest path that the eye could take from the primary orientation in reaching equilibrium. Consequently, it is also the shortest path for returning the eye to the primary orientation. Thus the restoring torque developed by the tissue surrounding the eye was approximated as proportional to the product of this angle and a unit vector along this axis. The relationship between orientation and restoring torque gives a unique torque-orientation relationship. 3. Once the appropriate torque-orientation relationship for eye rotation is established the velocity-position integrator can be modeled as a dynamical system that is a direct extension of the one-dimensional velocity-position integrator. The linear combination of the integrator state and a direct pathway