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Sample records for order independent similarity

  1. Wear Independent Similarity.

    PubMed

    Steele, Adam; Davis, Alexander; Kim, Joohyung; Loth, Eric; Bayer, Ilker S

    2015-06-17

    This study presents a new factor that can be used to design materials where desired surface properties must be retained under in-system wear and abrasion. To demonstrate this factor, a synthetic nonwetting coating is presented that retains chemical and geometric performance as material is removed under multiple wear conditions: a coarse vitrified abradant (similar to sanding), a smooth abradant (similar to rubbing), and a mild abradant (a blend of sanding and rubbing). With this approach, such a nonwetting material displays unprecedented mechanical durability while maintaining desired performance under a range of demanding conditions. This performance, herein termed wear independent similarity performance (WISP), is critical because multiple mechanisms and/or modes of wear can be expected to occur in many typical applications, e.g., combinations of abrasion, rubbing, contact fatigue, weathering, particle impact, etc. Furthermore, these multiple wear mechanisms tend to quickly degrade a novel surface's unique performance, and thus many promising surfaces and materials never scale out of research laboratories. Dynamic goniometry and scanning electron microscopy results presented herein provide insight into these underlying mechanisms, which may also be applied to other coatings and materials. PMID:26018058

  2. A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery

    PubMed Central

    Xie, Lei; Xie, Li; Bourne, Philip E.

    2009-01-01

    Functional relationships between proteins that do not share global structure similarity can be established by detecting their ligand-binding-site similarity. For a large-scale comparison, it is critical to accurately and efficiently assess the statistical significance of this similarity. Here, we report an efficient statistical model that supports local sequence order independent ligand–binding-site similarity searching. Most existing statistical models only take into account the matching vertices between two sites that are defined by a fixed number of points. In reality, the boundary of the binding site is not known or is dependent on the bound ligand making these approaches limited. To address these shortcomings and to perform binding-site mapping on a genome-wide scale, we developed a sequence-order independent profile–profile alignment (SOIPPA) algorithm that is able to detect local similarity between unknown binding sites a priori. The SOIPPA scoring integrates geometric, evolutionary and physical information into a unified framework. However, this imposes a significant challenge in assessing the statistical significance of the similarity because the conventional probability model that is based on fixed-point matching cannot be applied. Here we find that scores for binding-site matching by SOIPPA follow an extreme value distribution (EVD). Benchmark studies show that the EVD model performs at least two-orders faster and is more accurate than the non-parametric statistical method in the previous SOIPPA version. Efficient statistical analysis makes it possible to apply SOIPPA to genome-based drug discovery. Consequently, we have applied the approach to the structural genome of Mycobacterium tuberculosis to construct a protein–ligand interaction network. The network reveals highly connected proteins, which represent suitable targets for promiscuous drugs. Contact: lxie@sdsc.edu PMID:19478004

  3. Ordered Self-Similar Patterns in Anisotropic Stochastic Growth.

    PubMed

    Yao, Zhenwei; Olvera de la Cruz, Monica

    2016-07-01

    We propose an anisotropic stochastic growth model to rationalize the anisotropic self-assembly of supramolecules to form elongated two-dimensional ribbon structures in a recent experiment. The model exhibits distinct growth scenarios that are critically controlled by the ratio of the transverse and the longitudinal growth rate. In the regime of suppressed transverse growth, the model generates the experimentally observed elongated structures through layer-by-layer growing. We further observe the convergence of rough clusters toward smooth regular elliptic patterns by averaging over a number of independent growth processes. Remarkably, these resulting elliptic clusters are self-similar in each instantaneous moment in the growth process. Statistical analysis suggests that the realization of such ordered patterns does not rely on the delicate coordination of different parts in the cluster growth. The self-similarity phenomenon derived from this idealized model may have wider implications, notably in the designed clustering of various elementary building blocks with anisotropic interactions. PMID:27003104

  4. Similar Situations? Special Needs in Different Groups of Independent Schools

    ERIC Educational Resources Information Center

    Magnússon, Gunnlaugur; Göransson, Kerstin; Nilholm, Claes

    2015-01-01

    This study explores differences between different groups of Swedish independent schools' work with pupils in need of special support (PNSS). Data comes from a total population study of independent schools. Data is analyzed using six categories of profile that may affect the special educational values at the schools, and therefore the situation for…

  5. Conceptual Similarity Promotes Generalization of Higher Order Fear Learning

    ERIC Educational Resources Information Center

    Dunsmoor, Joseph E.; White, Allison J.; LaBar, Kevin S.

    2011-01-01

    We tested the hypothesis that conceptual similarity promotes generalization of conditioned fear. Using a sensory preconditioning procedure, three groups of subjects learned an association between two cues that were conceptually similar, unrelated, or mismatched. Next, one of the cues was paired with a shock. The other cue was then reintroduced to…

  6. Evidence for modality-independent order coding in working memory.

    PubMed

    Depoorter, Ann; Vandierendonck, André

    2009-03-01

    The aim of the present study was to investigate the representation of serial order in working memory, more specifically whether serial order is coded by means of a modality-dependent or a modality-independent order code. This was investigated by means of a series of four experiments based on a dual-task methodology in which one short-term memory task was embedded between the presentation and recall of another short-term memory task. Two aspects were varied in these memory tasks--namely, the modality of the stimulus materials (verbal or visuo-spatial) and the presence of an order component in the task (an order or an item memory task). The results of this study showed impaired primary-task recognition performance when both the primary and the embedded task included an order component, irrespective of the modality of the stimulus materials. If one or both of the tasks did not contain an order component, less interference was found. The results of this study support the existence of a modality-independent order code. PMID:18609385

  7. The development of the Poincare-similar elements with eccentric anomaly as the independent variable

    NASA Technical Reports Server (NTRS)

    Bond, V. R.

    1976-01-01

    A new set of element differential equations for the perturbed two-body motion is derived. The elements are canonical and are similar to the classical canonical Poincare elements, which have time as the independent variable. The phase space is extended by introducing the total energy and time as canonically conjugated variables. The new independent variable is, to within an additive constant, the eccentric anomaly. These elements are compared to the Kustaanheimo-Stiefel (KS) element differential equations, which also have the eccentric anomaly as the independent variable. For several numerical examples, the accuracy and stability of the new set are equal to those of the KS solution. This comparable accuracy result can probably be attributed to the fact that both sets have the same time element and very similar energy elements. The new set has only 8 elements, compared to 10 elements for the KS set. Both sets are free from singularities due to vanishing eccentricity and inclination.

  8. Similarity

    NASA Technical Reports Server (NTRS)

    Apostol, Tom M. (Editor)

    1990-01-01

    In this 'Project Mathematics! series, sponsored by the California Institute for Technology (CalTech), the mathematical concept of similarity is presented. he history of and real life applications are discussed using actual film footage and computer animation. Terms used and various concepts of size, shape, ratio, area, and volume are demonstrated. The similarity of polygons, solids, congruent triangles, internal ratios, perimeters, and line segments using the previous mentioned concepts are shown.

  9. Length-independent structural similarities enrich the antibody CDR canonical class model.

    PubMed

    Nowak, Jaroslaw; Baker, Terry; Georges, Guy; Kelm, Sebastian; Klostermann, Stefan; Shi, Jiye; Sridharan, Sudharsan; Deane, Charlotte M

    2016-01-01

    Complementarity-determining regions (CDRs) are antibody loops that make up the antigen binding site. Here, we show that all CDR types have structurally similar loops of different lengths. Based on these findings, we created length-independent canonical classes for the non-H3 CDRs. Our length variable structural clusters show strong sequence patterns suggesting either that they evolved from the same original structure or result from some form of convergence. We find that our length-independent method not only clusters a larger number of CDRs, but also predicts canonical class from sequence better than the standard length-dependent approach. To demonstrate the usefulness of our findings, we predicted cluster membership of CDR-L3 sequences from 3 next-generation sequencing datasets of the antibody repertoire (over 1,000,000 sequences). Using the length-independent clusters, we can structurally classify an additional 135,000 sequences, which represents a ∼20% improvement over the standard approach. This suggests that our length-independent canonical classes might be a highly prevalent feature of antibody space, and could substantially improve our ability to accurately predict the structure of novel CDRs identified by next-generation sequencing. PMID:26963563

  10. Length-independent structural similarities enrich the antibody CDR canonical class model

    PubMed Central

    Nowak, Jaroslaw; Baker, Terry; Georges, Guy; Kelm, Sebastian; Klostermann, Stefan; Shi, Jiye; Sridharan, Sudharsan; Deane, Charlotte M.

    2016-01-01

    ABSTRACT Complementarity-determining regions (CDRs) are antibody loops that make up the antigen binding site. Here, we show that all CDR types have structurally similar loops of different lengths. Based on these findings, we created length-independent canonical classes for the non-H3 CDRs. Our length variable structural clusters show strong sequence patterns suggesting either that they evolved from the same original structure or result from some form of convergence. We find that our length-independent method not only clusters a larger number of CDRs, but also predicts canonical class from sequence better than the standard length-dependent approach. To demonstrate the usefulness of our findings, we predicted cluster membership of CDR-L3 sequences from 3 next-generation sequencing datasets of the antibody repertoire (over 1,000,000 sequences). Using the length-independent clusters, we can structurally classify an additional 135,000 sequences, which represents a ∼20% improvement over the standard approach. This suggests that our length-independent canonical classes might be a highly prevalent feature of antibody space, and could substantially improve our ability to accurately predict the structure of novel CDRs identified by next-generation sequencing. PMID:26963563

  11. Strong Similarity Measures for Ordered Sets of Documents in Information Retrieval.

    ERIC Educational Resources Information Center

    Egghe, L.; Michel, Christine

    2002-01-01

    Presents a general method to construct ordered similarity measures in information retrieval based on classical similarity measures for ordinary sets. Describes a test of some of these measures in an information retrieval system that extracted ranked document sets and discuses the practical usability of the ordered similarity measures. (Author/LRW)

  12. Gauging Similarity with n-Grams: Language-Independent Categorization of Text

    NASA Astrophysics Data System (ADS)

    Damashek, Marc

    1995-02-01

    A language-independent means of gauging topical similarity in unrestricted text is described. The method combines information derived from n-grams (consecutive sequences of n characters) with a simple vector-space technique that makes sorting, categorization, and retrieval feasible in a large multilingual collection of documents. No prior information about document content or language is required. Context, as it applies to document similarity, can be accommodated by a well-defined procedure. When an existing document is used as an exemplar, the completeness and accuracy with which topically related documents are retrieved is comparable to that of the best existing systems. The results of a formal evaluation are discussed, and examples are given using documents in English and Japanese.

  13. Gauging Similarity with n-Grams: Language-Independent Categorization of Text.

    PubMed

    Damashek, M

    1995-02-10

    A language-independent means of gauging topical similarity in unrestricted text is described. The method combines information derived from n-grams (consecutive sequences of n characters) with a simple vector-space technique that makes sorting, categorization, and retrieval feasible in a large multilingual collection of documents. No prior information about document content or language is required. Context, as it applies to document similarity, can be accommodated by a well-defined procedure. When an existing document is used as an exemplar, the completeness and accuracy with which topically related documents are retrieved is comparable to that of the best existing systems. The results of a formal evaluation are discussed, and examples are given using documents in English and Japanese. PMID:17813910

  14. Zeroing In on Mindfulness Facets: Similarities, Validity, and Dimensionality across Three Independent Measures

    PubMed Central

    Siegling, Alex B.; Petrides, K. V.

    2016-01-01

    The field of mindfulness has seen a proliferation of psychometric measures, characterised by differences in operationalisation and conceptualisation. To illuminate the scope of, and offer insights into, the diversity apparent in the burgeoning literature, two distinct samples were used to examine the similarities, validity, and dimensionality of mindfulness facets and subscales across three independent measures: the Five Facet Mindfulness Questionnaire (FFMQ), Philadelphia Mindfulness Scale (PHLMS), and Toronto Mindfulness Scale (TMS). Results revealed problematic associations of FFMQ Observe with the other FFMQ facets and supported a four-factor structure (omitting this facet), while disputing the originally envisaged five-factor model; thus, solidifying a pattern in the literature. Results also confirmed the bidimensional nature of the PHLMS and TMS subscales, respectively. A joint Confirmatory Factor Analysis showed that PHLMS Acceptance could be assimilated within the FFMQ’s four-factor model (as a distinct factor). The study offers a way of understanding interrelationships between the available mindfulness scales, so as to help practitioners and researchers make a more informed choice when conceptualising and operationalising mindfulness. PMID:27055017

  15. 3 CFR 13579 - Executive Order 13579 of July 11, 2011. Regulation and Independent Regulatory Agencies

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 3 The President 1 2012-01-01 2012-01-01 false Executive Order 13579 of July 11, 2011. Regulation and Independent Regulatory Agencies 13579 Order 13579 Presidential Documents Executive Orders Executive Order 13579 of July 11, 2011 EO 13579 Regulation and Independent Regulatory Agencies By the authority vested in me as President by the...

  16. The similarity rules for second-order subsonic and supersonic flow

    NASA Technical Reports Server (NTRS)

    Van Dyke, Milton D

    1958-01-01

    The similarity rules for linearized compressible flow theory (Gothert's rule and its supersonic counterpart) are extended to second order. It is shown that any second-order subsonic flow can be related to "nearly incompressible" flow past the same body, which can be calculated by the Janzen-Rayleigh method.

  17. Construction of Weak and Strong Similarity Measures for Ordered Sets of Documents Using Fuzzy Set Techniques.

    ERIC Educational Resources Information Center

    Egghe, L.; Michel, C.

    2003-01-01

    Ordered sets (OS) of documents are encountered more and more in information distribution systems, such as information retrieval systems. Classical similarity measures for ordinary sets of documents need to be extended to these ordered sets. This is done in this article using fuzzy set techniques. The practical usability of the OS-measures is…

  18. Assessing the differences and similarities between hospital chains and independents regarding revenues, profits, and community contributions.

    PubMed

    McDermott, Dennis R

    2009-01-01

    Hospital systems or chains continue to grow their market share relative to independent hospitals. This trend generates concerns among health care industry observers as historical performance suggests chains charge more for health care services than the independents while providing reduced contributions to their community. This study empirically assesses key performance measures of 67 acute-care hospitals in Virginia by testing if there are differences between chains and independents regarding total patient revenues, revenues per admission, profitability and community support, including charity care, bad debt, taxes paid and Medicaid participation. Implications to industry policy-makers as well as to hospital executives and marketing managers are then presented. PMID:19197585

  19. Similar negative impacts of temperature on global wheat yield estimated by three independent methods

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The potential impact of global temperature change on global wheat production has recently been assessed with different methods, scaling and aggregation approaches. Here we show that grid-based simulations, point-based simulations, and statistical regressions produce similar estimates of temperature ...

  20. The development of the Poincare-similar elements with true anomaly as the independent variable

    NASA Technical Reports Server (NTRS)

    Mueller, A.

    1976-01-01

    In reference 1, the Hamiltonian of the unperturbed two-body problem in extended phase space is established. Depending on the type of time transformation, eight canonical elements were developed with the true anomaly or the eccentric anomaly as the independent variable. These two new sets, DS(phi) and DS(u), however contain singularities for small eccentricities and inclinations. In reference 2, these singularities are removed by a transformation from DS(u) to eight canonical PS(u) elements. In reference 3, the DS(phi) variables are transformed to the PS(phi) elements to remove the singularities. However, no direct relation was established between the eight canonical PS(phi) elements and the Cartesian coordinates. It is the purpose of this report to establish those relations and to develop the perturbed equations of motion in the PS(phi) space. This report also demonstrates the accuracy of this new set when it is applied to numerical orbit prediction problems.

  1. Similar Representations of Sequence Knowledge in Young and Older Adults: A Study of Effector Independent Transfer.

    PubMed

    Barnhoorn, Jonathan S; Döhring, Falko R; Van Asseldonk, Edwin H F; Verwey, Willem B

    2016-01-01

    Older adults show reduced motor performance and changes in motor skill development. To better understand these changes, we studied differences in sequence knowledge representations between young and older adults using a transfer task. Transfer, or the ability to apply motor skills flexibly, is highly relevant in day-to-day motor activity and facilitates generalization of learning to new contexts. By using movement types that are completely unrelated in terms of muscle activation and response location, we focused on transfer facilitated by the early, visuospatial system. We tested 32 right-handed older adults (65-75) and 32 young adults (18-30). During practice of a discrete sequence production task, participants learned two six-element sequences using either unimanual key-presses (KPs) or by moving a lever with lower arm flexion-extension (FE) movements. Each sequence was performed 144 times. They then performed a test phase consisting of familiar and random sequences performed with the type of movements not used during practice. Both age groups displayed transfer from FE to KP movements as indicated by faster performance on the familiar sequences in the test phase. Only young adults transferred their sequence knowledge from KP to FE movements. In both directions, the young showed higher transfer than older adults. These results suggest that the older participants, like the young, represented their sequences in an abstract visuospatial manner. Transfer was asymmetric in both age groups: there was more transfer from FE to KP movements than vice versa. This similar asymmetry is a further indication that the types of representations that older adults develop are comparable to those that young adults develop. We furthermore found that older adults improved less during FE practice, gained less explicit knowledge, displayed a smaller visuospatial working memory capacity and had lower processing speed than young adults. Despite the many differences between young and older

  2. Similar Representations of Sequence Knowledge in Young and Older Adults: A Study of Effector Independent Transfer

    PubMed Central

    Barnhoorn, Jonathan S.; Döhring, Falko R.; Van Asseldonk, Edwin H. F.; Verwey, Willem B.

    2016-01-01

    Older adults show reduced motor performance and changes in motor skill development. To better understand these changes, we studied differences in sequence knowledge representations between young and older adults using a transfer task. Transfer, or the ability to apply motor skills flexibly, is highly relevant in day-to-day motor activity and facilitates generalization of learning to new contexts. By using movement types that are completely unrelated in terms of muscle activation and response location, we focused on transfer facilitated by the early, visuospatial system. We tested 32 right-handed older adults (65–75) and 32 young adults (18–30). During practice of a discrete sequence production task, participants learned two six-element sequences using either unimanual key-presses (KPs) or by moving a lever with lower arm flexion-extension (FE) movements. Each sequence was performed 144 times. They then performed a test phase consisting of familiar and random sequences performed with the type of movements not used during practice. Both age groups displayed transfer from FE to KP movements as indicated by faster performance on the familiar sequences in the test phase. Only young adults transferred their sequence knowledge from KP to FE movements. In both directions, the young showed higher transfer than older adults. These results suggest that the older participants, like the young, represented their sequences in an abstract visuospatial manner. Transfer was asymmetric in both age groups: there was more transfer from FE to KP movements than vice versa. This similar asymmetry is a further indication that the types of representations that older adults develop are comparable to those that young adults develop. We furthermore found that older adults improved less during FE practice, gained less explicit knowledge, displayed a smaller visuospatial working memory capacity and had lower processing speed than young adults. Despite the many differences between young and

  3. The Relation of Birth Order, Social Class, and Need Achievement to Independent Judgement

    ERIC Educational Resources Information Center

    Rhine, W. Ray

    1974-01-01

    This article reports an investigation in which the brith order, social class, and level of achievement arousal are the variables considered when fifth and sixth-grade girls make independent judgements in performing a set task. (JH)

  4. Modality independence of order coding in working memory: Evidence from cross-modal order interference at recall.

    PubMed

    Vandierendonck, André

    2016-01-01

    Working memory researchers do not agree on whether order in serial recall is encoded by dedicated modality-specific systems or by a more general modality-independent system. Although previous research supports the existence of autonomous modality-specific systems, it has been shown that serial recognition memory is prone to cross-modal order interference by concurrent tasks. The present study used a serial recall task, which was performed in a single-task condition and in a dual-task condition with an embedded memory task in the retention interval. The modality of the serial task was either verbal or visuospatial, and the embedded tasks were in the other modality and required either serial or item recall. Care was taken to avoid modality overlaps during presentation and recall. In Experiment 1, visuospatial but not verbal serial recall was more impaired when the embedded task was an order than when it was an item task. Using a more difficult verbal serial recall task, verbal serial recall was also more impaired by another order recall task in Experiment 2. These findings are consistent with the hypothesis of modality-independent order coding. The implications for views on short-term recall and the multicomponent view of working memory are discussed. PMID:25801664

  5. Distinctive Order Based Self-Similarity descriptor for multi-sensor remote sensing image matching

    NASA Astrophysics Data System (ADS)

    Sedaghat, Amin; Ebadi, Hamid

    2015-10-01

    Robust, well-distributed and accurate feature matching in multi-sensor remote sensing image is a difficult task duo to significant geometric and illumination differences. In this paper, a robust and effective image matching approach is presented for multi-sensor remote sensing images. The proposed approach consists of three main steps. In the first step, UR-SIFT (Uniform robust scale invariant feature transform) algorithm is applied for uniform and dense local feature extraction. In the second step, a novel descriptor namely Distinctive Order Based Self Similarity descriptor, DOBSS descriptor, is computed for each extracted feature. Finally, a cross matching process followed by a consistency check in the projective transformation model is performed for feature correspondence and mismatch elimination. The proposed method was successfully applied for matching various multi-sensor satellite images as: ETM+, SPOT 4, SPOT 5, ASTER, IRS, SPOT 6, QuickBird, GeoEye and Worldview sensors, and the results demonstrate its robustness and capability compared to common image matching techniques such as SIFT, PIIFD, GLOH, LIOP and LSS.

  6. Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty

    PubMed Central

    Carnes, Jason; Anupama, Atashi; Balmer, Oliver; Jackson, Andrew; Lewis, Michael; Brown, Rob; Cestari, Igor; Desquesnes, Marc; Gendrin, Claire; Hertz-Fowler, Christiane; Imamura, Hideo; Ivens, Alasdair; Kořený, Luděk; Lai, De-Hua; MacLeod, Annette; McDermott, Suzanne M.; Merritt, Chris; Monnerat, Severine; Moon, Wonjong; Myler, Peter; Phan, Isabelle; Ramasamy, Gowthaman; Sivam, Dhileep; Lun, Zhao-Rong; Lukeš, Julius; Stuart, Ken; Schnaufer, Achim

    2015-01-01

    Two key biological features distinguish Trypanosoma evansi from the T. brucei group: independence from the tsetse fly as obligatory vector, and independence from the need for functional mitochondrial DNA (kinetoplast or kDNA). In an effort to better understand the molecular causes and consequences of these differences, we sequenced the genome of an akinetoplastic T. evansi strain from China and compared it to the T. b. brucei reference strain. The annotated T. evansi genome shows extensive similarity to the reference, with 94.9% of the predicted T. b. brucei coding sequences (CDS) having an ortholog in T. evansi, and 94.6% of the non-repetitive orthologs having a nucleotide identity of 95% or greater. Interestingly, several procyclin-associated genes (PAGs) were disrupted or not found in this T. evansi strain, suggesting a selective loss of function in the absence of the insect life-cycle stage. Surprisingly, orthologous sequences were found in T. evansi for all 978 nuclear CDS predicted to represent the mitochondrial proteome in T. brucei, although a small number of these may have lost functionality. Consistent with previous results, the F1FO-ATP synthase γ subunit was found to have an A281 deletion, which is involved in generation of a mitochondrial membrane potential in the absence of kDNA. Candidates for CDS that are absent from the reference genome were identified in supplementary de novo assemblies of T. evansi reads. Phylogenetic analyses show that the sequenced strain belongs to a dominant group of clonal T. evansi strains with worldwide distribution that also includes isolates classified as T. equiperdum. At least three other types of T. evansi or T. equiperdum have emerged independently. Overall, the elucidation of the T. evansi genome sequence reveals extensive similarity of T. brucei and supports the contention that T. evansi should be classified as a subspecies of T. brucei. PMID:25568942

  7. Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.

    PubMed

    Carnes, Jason; Anupama, Atashi; Balmer, Oliver; Jackson, Andrew; Lewis, Michael; Brown, Rob; Cestari, Igor; Desquesnes, Marc; Gendrin, Claire; Hertz-Fowler, Christiane; Imamura, Hideo; Ivens, Alasdair; Kořený, Luděk; Lai, De-Hua; MacLeod, Annette; McDermott, Suzanne M; Merritt, Chris; Monnerat, Severine; Moon, Wonjong; Myler, Peter; Phan, Isabelle; Ramasamy, Gowthaman; Sivam, Dhileep; Lun, Zhao-Rong; Lukeš, Julius; Stuart, Ken; Schnaufer, Achim

    2015-01-01

    Two key biological features distinguish Trypanosoma evansi from the T. brucei group: independence from the tsetse fly as obligatory vector, and independence from the need for functional mitochondrial DNA (kinetoplast or kDNA). In an effort to better understand the molecular causes and consequences of these differences, we sequenced the genome of an akinetoplastic T. evansi strain from China and compared it to the T. b. brucei reference strain. The annotated T. evansi genome shows extensive similarity to the reference, with 94.9% of the predicted T. b. brucei coding sequences (CDS) having an ortholog in T. evansi, and 94.6% of the non-repetitive orthologs having a nucleotide identity of 95% or greater. Interestingly, several procyclin-associated genes (PAGs) were disrupted or not found in this T. evansi strain, suggesting a selective loss of function in the absence of the insect life-cycle stage. Surprisingly, orthologous sequences were found in T. evansi for all 978 nuclear CDS predicted to represent the mitochondrial proteome in T. brucei, although a small number of these may have lost functionality. Consistent with previous results, the F1FO-ATP synthase γ subunit was found to have an A281 deletion, which is involved in generation of a mitochondrial membrane potential in the absence of kDNA. Candidates for CDS that are absent from the reference genome were identified in supplementary de novo assemblies of T. evansi reads. Phylogenetic analyses show that the sequenced strain belongs to a dominant group of clonal T. evansi strains with worldwide distribution that also includes isolates classified as T. equiperdum. At least three other types of T. evansi or T. equiperdum have emerged independently. Overall, the elucidation of the T. evansi genome sequence reveals extensive similarity of T. brucei and supports the contention that T. evansi should be classified as a subspecies of T. brucei. PMID:25568942

  8. Birth Order and Field Dependence-Independence: A Failure to Replicate

    ERIC Educational Resources Information Center

    Finley, Gordon E.; Solla, Joseph

    1975-01-01

    The Children's Embedded Figures Test was individually administered to 116 Caucasian, middle class, second grade children. Results suggest that a child's early experience in a particular birth order position may not be related to the development of field dependence-independence in any unambiguous and simple fashion. (Author/ED)

  9. First Things First: Similar List Length and Output Order Effects for Verbal and Nonverbal Stimuli

    ERIC Educational Resources Information Center

    Cortis, Cathleen; Dent, Kevin; Kennett, Steffan; Ward, Geoff

    2015-01-01

    When participants are presented with a short list of unrelated words and they are instructed that they may recall in any order, they nevertheless show a very strong tendency to recall in forward serial order. Thus, if asked to recall "in any orde"r: "hat, mouse, tea, stairs," participants often respond "hat, mouse, tea,…

  10. Mesh independent convergence of the modified inexact Newton method for a second order nonlinear problem

    SciTech Connect

    Kim, T; Pasciak, J E; Vassilevski, P S

    2004-09-20

    In this paper, we consider an inexact Newton method applied to a second order nonlinear problem with higher order nonlinearities. We provide conditions under which the method has a mesh-independent rate of convergence. To do this, we are required to first, set up the problem on a scale of Hilbert spaces and second, to devise a special iterative technique which converges in a higher than first order Sobolev norm. We show that the linear (Jacobian) system solved in Newton's method can be replaced with one iterative step provided that the initial nonlinear iterate is accurate enough. The closeness criteria can be taken independent of the mesh size. Finally, the results of numerical experiments are given to support the theory.

  11. Bacterial interactomes: Interacting protein partners share similar function and are validated in independent assays more frequently than previously reported.

    DOE PAGESBeta

    Shatsky, Maxim; Allen, Simon; Gold, Barbara; Liu, Nancy L.; Juba, Thomas R.; Elias, Dwayne A; Reveco, Sonia A.; Prathapam, Ramadevi; He, Jennifer; Yang, Wenhong; et al

    2016-05-01

    Numerous affinity purification – mass-spectrometry (AP-MS) and yeast two hybrid (Y2H) screens have each defined thousands of pairwise protein-protein interactions (PPIs), most between functionally unrelated proteins. The accuracy of these networks, however, is under debate. Here we present an AP-MS survey of the bacterium Desulfovibrio vulgaris together with a critical reanalysis of nine published bacterial Y2H and AP-MS screens. We have identified 459 high confidence PPIs from D. vulgaris and 391 from Escherichia coli. Compared to the nine published interactomes, our two networks are smaller; are much less highly connected; have significantly lower false discovery rates; and are much moremore » enriched in protein pairs that are encoded in the same operon, have similar functions, and are reproducibly detected in other physical interaction assays. Lastly, our work establishes more stringent benchmarks for the properties of protein interactomes and suggests that bona fide PPIs much more frequently involve protein partners that are annotated with similar functions or that can be validated in independent assays than earlier studies suggested.« less

  12. Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.

    PubMed

    Shatsky, Maxim; Allen, Simon; Gold, Barbara L; Liu, Nancy L; Juba, Thomas R; Reveco, Sonia A; Elias, Dwayne A; Prathapam, Ramadevi; He, Jennifer; Yang, Wenhong; Szakal, Evelin D; Liu, Haichuan; Singer, Mary E; Geller, Jil T; Lam, Bonita R; Saini, Avneesh; Trotter, Valentine V; Hall, Steven C; Fisher, Susan J; Brenner, Steven E; Chhabra, Swapnil R; Hazen, Terry C; Wall, Judy D; Witkowska, H Ewa; Biggin, Mark D; Chandonia, John-Marc; Butland, Gareth

    2016-05-01

    Numerous affinity purification-mass spectrometry (AP-MS) and yeast two-hybrid screens have each defined thousands of pairwise protein-protein interactions (PPIs), most of which are between functionally unrelated proteins. The accuracy of these networks, however, is under debate. Here, we present an AP-MS survey of the bacterium Desulfovibrio vulgaris together with a critical reanalysis of nine published bacterial yeast two-hybrid and AP-MS screens. We have identified 459 high confidence PPIs from D. vulgaris and 391 from Escherichia coli Compared with the nine published interactomes, our two networks are smaller, are much less highly connected, and have significantly lower false discovery rates. In addition, our interactomes are much more enriched in protein pairs that are encoded in the same operon, have similar functions, and are reproducibly detected in other physical interaction assays than the pairs reported in prior studies. Our work establishes more stringent benchmarks for the properties of protein interactomes and suggests that bona fide PPIs much more frequently involve protein partners that are annotated with similar functions or that can be validated in independent assays than earlier studies suggested. PMID:26873250

  13. Space-filling curves of self-similar sets (I): iterated function systems with order structures

    NASA Astrophysics Data System (ADS)

    Rao, Hui; Zhang, Shu-Qin

    2016-07-01

    This paper is the first part of a series which provides a systematic treatment of the space-filling curves of self-similar sets. In the present paper, we introduce a notion of linear graph-directed IFS (linear GIFS in short). We show that to construct a space-filling curve of a self-similar set, it amounts to exploring its linear GIFS structures. Compared to the previous methods, such as the L-system or recurrent set method, the linear GIFS approach is simpler, more rigorous and leads to further studies on this topic. We also propose a new algorithm for the beautiful visualization of space-filling curves. In a series of papers Dai et al (2015 arXiv:1511.05411 [math.GN]), Rao and Zhang (2015) and Rao and Zhang (2015), we investigate for a given self-similar set how to get ‘substitution rules’ for constructing space-filling curves, which was obscure in the literature. We solve the problem for self-similar sets of finite type, which covers most of the known results on constructions of space-filling curves.

  14. Is Word-Order Similarity Necessary for Cross-Linguistic Structural Priming?

    ERIC Educational Resources Information Center

    Chen, Baoguo; Jia, Yuefang; Wang, Zhu; Dunlap, Susan; Shin, Jeong-Ah

    2013-01-01

    This article presents two experiments employing two structural priming paradigms that investigated whether cross-linguistic syntactic priming occurred in Chinese and English passive sentences that differ in word order (production-to-production priming in Experiment 1 and comprehension-to-production priming in Experiment 2). Results revealed that…

  15. Response Errors Explain the Failure of Independent-Channels Models of Perception of Temporal Order

    PubMed Central

    García-Pérez, Miguel A.; Alcalá-Quintana, Rocío

    2012-01-01

    Independent-channels models of perception of temporal order (also referred to as threshold models or perceptual latency models) have been ruled out because two formal properties of these models (monotonicity and parallelism) are not borne out by data from ternary tasks in which observers must judge whether stimulus A was presented before, after, or simultaneously with stimulus B. These models generally assume that observed responses are authentic indicators of unobservable judgments, but blinks, lapses of attention, or errors in pressing the response keys (maybe, but not only, motivated by time pressure when reaction times are being recorded) may make observers misreport their judgments or simply guess a response. We present an extension of independent-channels models that considers response errors and we show that the model produces psychometric functions that do not satisfy monotonicity and parallelism. The model is illustrated by fitting it to data from a published study in which the ternary task was used. The fitted functions describe very accurately the absence of monotonicity and parallelism shown by the data. These characteristics of empirical data are thus consistent with independent-channels models when response errors are taken into consideration. The implications of these results for the analysis and interpretation of temporal order judgment data are discussed. PMID:22493586

  16. U. S. independents face new age for gas under FERC order 636

    SciTech Connect

    Gibbs, E.S. )

    1992-10-19

    This paper reports that the U.S. Federal Energy Regulatory Commission's Order 636 opens the doors to a potential new age for independent producers and others in the gas industry. Rather than defining new winners and losers, it creates the same opportunity for every competitor: a significant new role in the marketing of natural gas. But it is not for the faint of heart, the uneducated, or those who have not identified their goals, strategies, and parameters within which they intend to compete.

  17. Convergence acceleration for time-independent first-order PDE using optimal PNB-approximations

    SciTech Connect

    Holmgren, S.; Branden, H.

    1996-12-31

    We consider solving time-independent (steady-state) flow problems in 2D or 3D governed by hyperbolic or {open_quotes}almost hyperbolic{close_quotes} systems of partial differential equations (PDE). Examples of such PDE are the Euler and the Navier-Stokes equations. The PDE is discretized using a finite difference or finite volume scheme with arbitrary order of accuracy. If the matrix B describes the discretized differential operator and u denotes the approximate solution, the discrete problem is given by a large system of equations.

  18. Second-order interference of two independent and tunable single-mode continuous-wave lasers

    NASA Astrophysics Data System (ADS)

    Jianbin, Liu; Dong, Wei; Hui, Chen; Yu, Zhou; Huaibin, Zheng; Hong, Gao; Fu-Li, Li; Zhuo, Xu

    2016-03-01

    The second-order temporal interference of two independent single-mode continuous-wave lasers is discussed by employing two-photon interference in Feynman’s path integral theory. It is concluded that whether the second-order temporal interference pattern can or cannot be retrieved via two-photon coincidence counting rate is dependent on the resolution time of the detection system and the frequency difference between these two lasers. Two identical and tunable single-mode continuous-wave diode lasers are employed to verify the predictions. These studies are helpful to understand the physics of two-photon interference with photons of different spectra. Project supported by the National Natural Science Foundation of China (Grant No. 11404255) and the Doctor Foundation of Education Ministry of China (Grant No. 20130201120013).

  19. Reflecting Solutions of High Order Elliptic Differential Equations in Two Independent Variables Across Analytic Arcs. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Carleton, O.

    1972-01-01

    Consideration is given specifically to sixth order elliptic partial differential equations in two independent real variables x, y such that the coefficients of the highest order terms are real constants. It is assumed that the differential operator has distinct characteristics and that it can be factored as a product of second order operators. By analytically continuing into the complex domain and using the complex characteristic coordinates of the differential equation, it is shown that its solutions, u, may be reflected across analytic arcs on which u satisfies certain analytic boundary conditions. Moreover, a method is given whereby one can determine a region into which the solution is extensible. It is seen that this region of reflection is dependent on the original domain of difinition of the solution, the arc and the coefficients of the highest order terms of the equation and not on any sufficiently small quantities; i.e., the reflection is global in nature. The method employed may be applied to similar differential equations of order 2n.

  20. The mitochondrial genomes of Amphiascoides atopus and Schizopera knabeni (Harpacticoida: Miraciidae) reveal similarities between the copepod orders Harpacticoida and Poecilostomatoida.

    PubMed

    Easton, Erin E; Darrow, Emily M; Spears, Trisha; Thistle, David

    2014-03-15

    Members of subclass Copepoda are abundant, diverse, and-as a result of their variety of ecological roles in marine and freshwater environments-important, but their phylogenetic interrelationships are unclear. Recent studies of arthropods have used gene arrangements in the mitochondrial (mt) genome to infer phylogenies, but for copepods, only seven complete mt genomes have been published. These data revealed several within-order and few among-order similarities. To increase the data available for comparisons, we sequenced the complete mt genome (13,831base pairs) of Amphiascoides atopus and 10,649base pairs of the mt genome of Schizopera knabeni (both in the family Miraciidae of the order Harpacticoida). Comparison of our data to those for Tigriopus japonicus (family Harpacticidae, order Harpacticoida) revealed similarities in gene arrangement among these three species that were consistent with those found within and among families of other copepod orders. Comparison of the mt genomes of our species with those known from other copepod orders revealed the arrangement of mt genes of our Harpacticoida species to be more similar to that of Sinergasilus polycolpus (order Poecilostomatoida) than to that of T. japonicus. The similarities between S. polycolpus and our species are the first to be noted across the boundaries of copepod orders and support the possibility that mt-gene arrangement might be used to infer copepod phylogenies. We also found that our two species had extremely truncated transfer RNAs and that gene overlaps occurred much more frequently than has been reported for other copepod mt genomes. PMID:24389499

  1. Development of Boundary Condition Independent Reduced Order Thermal Models using Proper Orthogonal Decomposition

    NASA Astrophysics Data System (ADS)

    Raghupathy, Arun; Ghia, Karman; Ghia, Urmila

    2008-11-01

    Compact Thermal Models (CTM) to represent IC packages has been traditionally developed using the DELPHI-based (DEvelopment of Libraries of PHysical models for an Integrated design) methodology. The drawbacks of this method are presented, and an alternative method is proposed. A reduced-order model that provides the complete thermal information accurately with less computational resources can be effectively used in system level simulations. Proper Orthogonal Decomposition (POD), a statistical method, can be used to reduce the order of the degree of freedom or variables of the computations for such a problem. POD along with the Galerkin projection allows us to create reduced-order models that reproduce the characteristics of the system with a considerable reduction in computational resources while maintaining a high level of accuracy. The goal of this work is to show that this method can be applied to obtain a boundary condition independent reduced-order thermal model for complex components. The methodology is applied to the 1D transient heat equation.

  2. Functional independence in resting-state connectivity facilitates higher-order cognition.

    PubMed

    James, G Andrew; Kearney-Ramos, Tonisha E; Young, Jonathan A; Kilts, Clinton D; Gess, Jennifer L; Fausett, Jennifer S

    2016-06-01

    Growing evidence suggests that intrinsic functional connectivity (i.e. highly structured patterns of communication between brain regions during wakeful rest) may encode cognitive ability. However, the generalizability of these findings is limited by between-study differences in statistical methodology and cognitive domains evaluated. To address this barrier, we evaluated resting-state neural representations of multiple cognitive domains within a relatively large normative adult sample. Forty-four participants (mean(sd) age=31(10) years; 18 male and 26 female) completed a resting-state functional MRI scan and neuropsychological assessments spanning motor, visuospatial, language, learning, memory, attention, working memory, and executive function performance. Robust linear regression related cognitive performance to resting-state connectivity among 200 a priori determined functional regions of interest (ROIs). Only higher-order cognitions (such as learning and executive function) demonstrated significant relationships between brain function and behavior. Additionally, all significant relationships were negative - characterized by moderately positive correlations among low performers and weak to moderately negative correlations among high performers. These findings suggest that functional independence among brain regions at rest facilitates cognitive performance. Our interpretation is consistent with graph theoretic analyses which represent the brain as independent functional nodes that undergo dynamic reorganization with task demand. Future work will build upon these findings by evaluating domain-specific variance in resting-state neural representations of cognitive impairment among patient populations. PMID:27105037

  3. eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

    PubMed Central

    Brylinski, Michal

    2014-01-01

    Detecting similarities between ligand binding sites in the absence of global homology between target proteins has been recognized as one of the critical components of modern drug discovery. Local binding site alignments can be constructed using sequence order-independent techniques, however, to achieve a high accuracy, many current algorithms for binding site comparison require high-quality experimental protein structures, preferably in the bound conformational state. This, in turn, complicates proteome scale applications, where only various quality structure models are available for the majority of gene products. To improve the state-of-the-art, we developed eMatchSite, a new method for constructing sequence order-independent alignments of ligand binding sites in protein models. Large-scale benchmarking calculations using adenine-binding pockets in crystal structures demonstrate that eMatchSite generates accurate alignments for almost three times more protein pairs than SOIPPA. More importantly, eMatchSite offers a high tolerance to structural distortions in ligand binding regions in protein models. For example, the percentage of correctly aligned pairs of adenine-binding sites in weakly homologous protein models is only 4–9% lower than those aligned using crystal structures. This represents a significant improvement over other algorithms, e.g. the performance of eMatchSite in recognizing similar binding sites is 6% and 13% higher than that of SiteEngine using high- and moderate-quality protein models, respectively. Constructing biologically correct alignments using predicted ligand binding sites in protein models opens up the possibility to investigate drug-protein interaction networks for complete proteomes with prospective systems-level applications in polypharmacology and rational drug repositioning. eMatchSite is freely available to the academic community as a web-server and a stand-alone software distribution at http://www.brylinski.org/ematchsite. PMID

  4. Demonstrating the effects of phonological similarity and frequency on item and order memory in Down syndrome using process dissociation.

    PubMed

    Smith, Elizabeth; Jarrold, Christopher

    2014-12-01

    It is important to distinguish between memory for item information and memory for order information when considering the nature of verbal short-term memory (vSTM) performance. Although other researchers have attempted to make this distinction between item and order memory in children, none has done so using process dissociation. This study shows that such an approach can be particularly useful and informative. Individuals with Down syndrome (DS) tend to experience a vSTM deficit. These two experiments explored whether phonological similarity (Experiment 1) and item frequency (Experiment 2) affected vSTM for item and order information in a group of individuals with DS compared with typically developing (TD) vocabulary-matched children. Process dissociation was used to obtain measures of item and order memory via Nairne and Kelley's procedure (Journal of Memory and Language, 50 (2004) 113-133). Those with DS were poorer than the matched TD group for recall of both item and order information. However, in both populations, phonologically similar items reduced order memory but enhanced item memory, whereas high-frequency items resulted in improvements in both item and order memory-effects that are in line with previous research in the adult literature. These results indicate that, despite poorer vSTM performance in DS, individuals experience phonological coding of verbal input and a contribution of long-term memory knowledge to recall. These findings inform routes for interventions for those with DS, highlighting the need to enhance both item and order memory. Moreover, this work demonstrates that process dissociation is applicable and informative for studying special populations and children. PMID:25089885

  5. Device-independent test of causal order and relations to fixed-points

    NASA Astrophysics Data System (ADS)

    Baumeler, Ämin; Wolf, Stefan

    2016-03-01

    Bell non-local correlations cannot be naturally explained in a fixed causal structure. This serves as a motivation for considering models where no global assumption is made beyond logical consistency. The assumption of a fixed causal order between a set of parties, together with free randomness, implies device-independent inequalities—just as the assumption of locality does. It is known that local validity of quantum theory is consistent with violating such inequalities. Moreover, for three parties or more, even the (stronger) assumption of local classical probability theory plus logical consistency allows for violating causal inequalities. Here, we show that a classical environment (with which the parties interact), possibly containing loops, is logically consistent if and only if whatever the involved parties do, there is exactly one fixed-point, the latter being representable as a mixture of deterministic fixed-points. We further show that the non-causal view allows for a model of computation strictly more powerful than computation in a world of fixed causal orders.

  6. Multiple independent origins of mitochondrial control region duplications in the order Psittaciformes

    PubMed Central

    Schirtzinger, Erin E.; Tavares, Erika S.; Gonzales, Lauren A.; Eberhard, Jessica R.; Miyaki, Cristina Y.; Sanchez, Juan J.; Hernandez, Alexis; Müeller, Heinrich; Graves, Gary R.; Fleischer, Robert C.; Wright, Timothy F.

    2012-01-01

    Mitochondrial genomes are generally thought to be under selection for compactness, due to their small size, consistent gene content, and a lack of introns or intergenic spacers. As more animal mitochondrial genomes are fully sequenced, rearrangements and partial duplications are being identified with increasing frequency, particularly in birds (Class Aves). In this study, we investigate the evolutionary history of mitochondrial control region states within the avian order Psittaciformes (parrots and cockatoos). To this aim, we reconstructed a comprehensive multi-locus phylogeny of parrots, used PCR of three diagnostic fragments to classify the mitochondrial control region state as single or duplicated, and mapped these states onto the phylogeny. We further sequenced 44 selected species to validate these inferences of control region state. Ancestral state reconstruction using a range of weighting schemes identified six independent origins of mitochondrial control region duplications within Psittaciformes. Analysis of sequence data showed that varying levels of mitochondrial gene and tRNA homology and degradation were present within a given clade exhibiting duplications. Levels of divergence between control regions within an individual varied from 0–10.9% with the differences occurring mainly between 51 and 225 nucleotides 3′ of the goose hairpin in domain I. Further investigations into the fates of duplicated mitochondrial genes, the potential costs and benefits of having a second control region, and the complex relationship between evolutionary rates, selection, and time since duplication are needed to fully explain these patterns in the mitochondrial genome. PMID:22543055

  7. Mutation-order divergence by sexual selection: diversification of sexual signals in similar environments as a first step in speciation.

    PubMed

    Mendelson, Tamra C; Martin, Michael D; Flaxman, Samuel M

    2014-09-01

    The origin of species remains a central question, and recent research focuses on the role of ecological differences in promoting speciation. Ecological differences create opportunities for divergent selection (i.e. 'ecological' speciation), a Darwinian hypothesis that hardly requires justification. In contrast, 'mutation-order' speciation proposes that, instead of adapting to different environments, populations find different ways to adapt to similar environments, implying that speciation does not require ecological differences. This distinction is critical as it provides an alternative hypothesis to the prevailing view that ecological differences drive speciation. Speciation by sexual selection lies at the centre of debates about the importance of ecological differences in promoting speciation; here, we present verbal and mathematical models of mutation-order divergence by sexual selection. We develop three general cases and provide a two-locus population genetic model for each. Results indicate that alternative secondary sexual traits can fix in populations that initially experience similar natural and sexual selection and that divergent traits and preferences can remain stable in the face of low gene flow. This stable divergence can facilitate subsequent divergence that completes or reinforces speciation. We argue that a mutation-order process could explain widespread diversity in secondary sexual traits among closely related, allopatric species. PMID:24943881

  8. An integral-factorized implementation of the driven similarity renormalization group second-order multireference perturbation theory

    NASA Astrophysics Data System (ADS)

    Hannon, Kevin P.; Li, Chenyang; Evangelista, Francesco A.

    2016-05-01

    We report an efficient implementation of a second-order multireference perturbation theory based on the driven similarity renormalization group (DSRG-MRPT2) [C. Li and F. A. Evangelista, J. Chem. Theory Comput. 11, 2097 (2015)]. Our implementation employs factorized two-electron integrals to avoid storage of large four-index intermediates. It also exploits the block structure of the reference density matrices to reduce the computational cost to that of second-order Møller-Plesset perturbation theory. Our new DSRG-MRPT2 implementation is benchmarked on ten naphthyne isomers using basis sets up to quintuple-ζ quality. We find that the singlet-triplet splittings (ΔST) of the naphthyne isomers strongly depend on the equilibrium structures. For a consistent set of geometries, the ΔST values predicted by the DSRG-MRPT2 are in good agreements with those computed by the reduced multireference coupled cluster theory with singles, doubles, and perturbative triples.

  9. The apparent permeabilities of Caco-2 cells to marketed drugs: magnitude, and independence from both biophysical properties and endogenite similarities

    PubMed Central

    O’Hagan, Steve

    2015-01-01

    We bring together fifteen, nonredundant, tabulated collections (amounting to 696 separate measurements) of the apparent permeability (Papp) of Caco-2 cells to marketed drugs. While in some cases there are some significant interlaboratory disparities, most are quite minor. Most drugs are not especially permeable through Caco-2 cells, with the median Papp value being some 16 ⋅ 10−6 cm s−1. This value is considerably lower than those (1,310 and 230 ⋅ 10−6 cm s−1) recently used in some simulations that purported to show that Papp values were too great to be transporter-mediated only. While these values are outliers, all values, and especially the comparatively low values normally observed, are entirely consistent with transporter-only mediated uptake, with no need to invoke phospholipid bilayer diffusion. The apparent permeability of Caco-2 cells to marketed drugs is poorly correlated with either simple biophysical properties, the extent of molecular similarity to endogenous metabolites (endogenites), or any specific substructural properties. In particular, the octanol:water partition coefficient, logP, shows negligible correlation with Caco-2 permeability. The data are best explained on the basis that most drugs enter (and exit) Caco-2 cells via a multiplicity of transporters of comparatively weak specificity. PMID:26618081

  10. Classical ligands interact with native and recombinant tubulin from Onchocerca volvulus with similar rank order of magnitude.

    PubMed

    Wampande, Eddie M; Richard McIntosh, J; Lubega, George W

    2007-10-01

    The alpha- and beta-tubulin genes from Onchocerca volvulus were individually expressed for the first time in Escherichia coli (DH5alpha). The recombinant tubulins were purified, renatured and reconstituted into oligomers, probably dimers, which were competent to bind three classical tubulin ligands: mebendazole (MBZ), taxol (TAX) and vinblastine (VBN). A new charcoal-dependent binding assay allowed accurate discrimination between specific and non-specific ligand binding in crude cell extracts. To compare the magnitude of binding of both native and recombinant forms of tubulin, we developed an ELISA assay for estimating the amount of tubulin in soluble protein extracts of O. volvulus. Binding assays were performed; both the maximum binding at saturating ligand concentrations (B(max)) and the equilibrium dissociation constants (K(d)) were determined. The B(max) values of the different ligands were significantly different from one another (P<0.05), but the order of the B(max) and K(d) for each drug were VBN > TAX > MBZ for both native and recombinant tubulin. Indeed, B(max) values for MBZ with native and recombinant tubulins were similar. On average, native tubulin had higher or similar binding capacity (B(max)) but a consistently higher affinity (lower K(d)) than the recombinant tubulin. We conclude that at least some of the recombinant molecules form receptors that are similar to those in native tubulin dimers. These data suggest that recombinant tubulin can be used to develop a molecular screen for novel anti-tubulin ligands to develop into drugs against onchocerciasis. PMID:17662615

  11. An integral-factorized implementation of the driven similarity renormalization group second-order multireference perturbation theory.

    PubMed

    Hannon, Kevin P; Li, Chenyang; Evangelista, Francesco A

    2016-05-28

    We report an efficient implementation of a second-order multireference perturbation theory based on the driven similarity renormalization group (DSRG-MRPT2) [C. Li and F. A. Evangelista, J. Chem. Theory Comput. 11, 2097 (2015)]. Our implementation employs factorized two-electron integrals to avoid storage of large four-index intermediates. It also exploits the block structure of the reference density matrices to reduce the computational cost to that of second-order Møller-Plesset perturbation theory. Our new DSRG-MRPT2 implementation is benchmarked on ten naphthyne isomers using basis sets up to quintuple-ζ quality. We find that the singlet-triplet splittings (ΔST) of the naphthyne isomers strongly depend on the equilibrium structures. For a consistent set of geometries, the ΔST values predicted by the DSRG-MRPT2 are in good agreements with those computed by the reduced multireference coupled cluster theory with singles, doubles, and perturbative triples. PMID:27250283

  12. The Ordering Challenge: An Online Game to Introduce Independent Demand Inventory Concepts

    ERIC Educational Resources Information Center

    Meyer, Brad C.; Bishop, Debra S.

    2011-01-01

    Students are put in the role of a manager who watches inventory levels decrease and must order at the right time and in the right quantity to minimize costs. This interactive game requires the students to race against time and has levels of increasing difficulty. It introduces the students to the concepts of holding cost, ordering cost, backlog…

  13. A new constrained fixed-point algorithm for ordering independent components

    NASA Astrophysics Data System (ADS)

    Zhang, Hongjuan; Guo, Chonghui; Shi, Zhenwei; Feng, Enmin

    2008-10-01

    Independent component analysis (ICA) aims to recover a set of unknown mutually independent components (ICs) from their observed mixtures without knowledge of the mixing coefficients. In the classical ICA model there exists ICs' indeterminacy on permutation and dilation. Constrained ICA is one of methods for solving this problem through introducing constraints into the classical ICA model. In this paper we first present a new constrained ICA model which composed of three parts: a maximum likelihood criterion as an objective function, statistical measures as inequality constraints and the normalization of demixing matrix as equality constraints. Next, we incorporate the new fixed-point (newFP) algorithm into this constrained ICA model to construct a new constrained fixed-point algorithm. Computation simulations on synthesized signals and speech signals demonstrate that this combination both can eliminate ICs' indeterminacy to a certain extent, and can provide better performance. Moreover, comparison results with the existing algorithm verify the efficiency of our new algorithm furthermore, and show that it is more simple to implement than the existing algorithm due to its advantage of not using the learning rate. Finally, this new algorithm is also applied for the real-world fetal ECG data, experiment results further indicate the efficiency of the new constrained fixed-point algorithm.

  14. Independence of First- and Second-Order Memories in Newborn Rabbits

    ERIC Educational Resources Information Center

    Coureaud, Gerard; Languille, Solene; Joly, Virginie; Schaal, Benoist; Hars, Bernard

    2011-01-01

    The mammary pheromone promotes the acquisition of novel odorants (CS1) in newborn rabbits. Here, experiments pinpoint that CS1 becomes able to support neonatal learning of other odorants (CS2). We therefore evaluated whether these first- and second-order memories remained dependent after reactivation. Amnesia induced after CS2 recall selectively…

  15. Previous gestational diabetes is independently associated with increased carotid intima-media thickness, similarly to metabolic syndrome – a case control study

    PubMed Central

    2012-01-01

    Background Women with previous gestational diabetes mellitus (pGDM) face a higher risk of developing type 2 diabetes and, consequently, a higher cardiovascular risk. This study aimed to compare the carotid intima-media thickness (cIMT) from young women with pGDM to those with metabolic syndrome (MS) and to healthy controls (CG) to verify whether a past history of pGDM could be independently associated with increased cIMT. Methods This is a cross-sectional study performed in two academic referral centers. Seventy-nine women with pGDM, 30 women with MS, and 60 CG aged between 18 and 47 years were enrolled. They all underwent physical examination and had blood glucose, total cholesterol, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol (LDLc), and triglycerides determined. The cIMT was measured by ultrasound in several carotid segments. The primary endpoint was cIMT and clinically relevant parameters included as predictors were: age, systolic blood pressure, waist, BMI, total cholesterol, LDLc, triglycerides, fasting glucose, previous history of GDM as a whole group, previous history of GDM without MS, presence of DM, presence of MS, and parity. Results cIMT was significantly higher in pGDM when compared to CG in all sites of measurements (P < 0.05) except for the right common carotid. The pGDM women showed similar cIMT measurements to MS in all sites of measurements, except for the left carotid bifurcation, where it was significantly higher than MS (P < 0.001). In a multivariate analysis which included classical cardiovascular risk factors and was adjusted for confounders, pGDM was shown to be independently associated with increased composite cIMT (P < 0.01). The pGDM without risk factors further showed similar cIMT to MS (P > 0.05) and an increased cIMT when compared to controls (P < 0.05). Conclusions Previous GDM was independently associated with increased composite cIMT in this young population, similarly to those with

  16. A Damage-Independent Role for 53BP1 that Impacts Break Order and Igh Architecture during Class Switch Recombination.

    PubMed

    Rocha, Pedro P; Raviram, Ramya; Fu, Yi; Kim, JungHyun; Luo, Vincent M; Aljoufi, Arafat; Swanzey, Emily; Pasquarella, Alessandra; Balestrini, Alessia; Miraldi, Emily R; Bonneau, Richard; Petrini, John; Schotta, Gunnar; Skok, Jane A

    2016-06-28

    During class switch recombination (CSR), B cells replace the Igh Cμ or δ exons with another downstream constant region exon (CH), altering the antibody isotype. CSR occurs through the introduction of AID-mediated double-strand breaks (DSBs) in switch regions and subsequent ligation of broken ends. Here, we developed an assay to investigate the dynamics of DSB formation in individual cells. We demonstrate that the upstream switch region Sμ is first targeted during recombination and that the mechanism underlying this control relies on 53BP1. Surprisingly, regulation of break order occurs through residual binding of 53BP1 to chromatin before the introduction of damage and independent of its established role in DNA repair. Using chromosome conformation capture, we show that 53BP1 mediates changes in chromatin architecture that affect break order. Finally, our results explain how changes in Igh architecture in the absence of 53BP1 could promote inversional rearrangements that compromise CSR. PMID:27320916

  17. Finely engineered slow light photonic crystal waveguides for efficient wideband wavelength-independent higher-order temporal solitons.

    PubMed

    Fu, Meicheng; Liao, Jiali; Shao, Zhengzheng; Marko, Matthew; Zhang, Yuanda; Wang, Xiaochun; Li, Xiujian

    2016-05-10

    By orthogonally dual-shifting the air-hole rows in the triangular photonic crystal waveguide, a novel finely engineered slow light silicon photonic crystal waveguide is designed for higher-order temporal solitons and ultrashort temporal pulse compression with a large fabrication tolerance. The engineering of dispersion provides the waveguide with a wide wavelength range with only low anomalous dispersion covering, which makes the compression ratio wavelength-independent and stable even under ultralow input pulse energy. The simulation results are based on nonlinear Schrödinger equation modeling, which demonstrates that the input picosecond pulses in the broad wavelength range with ultralow pJ pulse energy can be stably compressed by a factor of 6 to higher-order temporal solitons in a 250 μm short waveguide. PMID:27168285

  18. Robust Data Driven Model Order Estimation for Independent Component Analysis of fMRI Data with Low Contrast to Noise

    PubMed Central

    Majeed, Waqas; Avison, Malcolm J.

    2014-01-01

    Independent component analysis (ICA) has been successfully utilized for analysis of functional MRI (fMRI) data for task related as well as resting state studies. Although it holds the promise of becoming an unbiased data-driven analysis technique, a few choices have to be made prior to performing ICA, selection of a method for determining the number of independent components (nIC) being one of them. Choice of nIC has been shown to influence the ICA maps, and various approaches (mostly relying on information theoretic criteria) have been proposed and implemented in commonly used ICA analysis packages, such as MELODIC and GIFT. However, there has been no consensus on the optimal method for nIC selection, and many studies utilize arbitrarily chosen values for nIC. Accurate and reliable determination of true nIC is especially important in the setting where the signals of interest contribute only a small fraction of the total variance, i.e. very low contrast-to-noise ratio (CNR), and/or very focal response. In this study, we evaluate the performance of different model order selection criteria and demonstrate that the model order selected based upon bootstrap stability of principal components yields more reliable and accurate estimates of model order. We then demonstrate the utility of this fully data-driven approach to detect weak and focal stimulus-driven responses in real data. Finally, we compare the performance of different multi-run ICA approaches using pseudo-real data. PMID:24788636

  19. A gauge-independent zeroth-order regular approximation to the exact relativistic Hamiltonian--formulation and applications.

    PubMed

    Filatov, Michael; Cremer, Dieter

    2005-01-22

    A simple modification of the zeroth-order regular approximation (ZORA) in relativistic theory is suggested to suppress its erroneous gauge dependence to a high level of approximation. The method, coined gauge-independent ZORA (ZORA-GI), can be easily installed in any existing nonrelativistic quantum chemical package by programming simple one-electron matrix elements for the quasirelativistic Hamiltonian. Results of benchmark calculations obtained with ZORA-GI at the Hartree-Fock (HF) and second-order Moller-Plesset perturbation theory (MP2) level for dihalogens X(2) (X=F,Cl,Br,I,At) are in good agreement with the results of four-component relativistic calculations (HF level) and experimental data (MP2 level). ZORA-GI calculations based on MP2 or coupled-cluster theory with single and double perturbations and a perturbative inclusion of triple excitations [CCSD(T)] lead to accurate atomization energies and molecular geometries for the tetroxides of group VIII elements. With ZORA-GI/CCSD(T), an improved estimate for the atomization energy of hassium (Z=108) tetroxide is obtained. PMID:15740232

  20. Interpersonal Congruency, Attitude Similarity, and Interpersonal Attraction

    ERIC Educational Resources Information Center

    Touhey, John C.

    1975-01-01

    As no experimental study has examined the effects of congruency on attraction, the present investigation orthogonally varied attitude similarity and interpersonal congruency in order to compare the two independent variables as determinants of interpersonal attraction. (Author/RK)

  1. A ribosomal protein gene cluster is encoded in the mitochondrial DNA of Dictyostelium discoideum: UGA termination codons and similarity of gene order to Acanthamoeba castellanii.

    PubMed

    Iwamoto, M; Pi, M; Kurihara, M; Morio, T; Tanaka, Y

    1998-04-01

    We sequenced a region of about 14.5 kb downstream from the ribosomal protein L11 gene (rpl11) in the mitochondrial DNA (54+/-2 kb) of the cellular slime mold Dictyostelium discoideum. Sequence analysis revealed that eleven ribosomal protein genes and six open reading frames (ORFs) formed a cluster arranged in the order: rpl11-orf189-rps12-rps7-rpl2-rps19-+ ++orf425-orf1740-rpl16-rpl14-orf188- rps14-rps8-rpl6-rps13-orf127-orf796. This order was very similar to that of homologous genes in Acanthamoeba castellanii mitochondrial DNA. The N-terminal region of ORF425 and the C-terminal region of ORF1740 had partial similarities to the S3 ribosomal protein of other organisms. The termination codons of rpl16 and orf188 were UGA, which has not hitherto been found in genes encoded in D. discoideum mitochondrial DNA. PMID:9560439

  2. Antimicrobial preservatives induce aggregation of interferon alpha-2a: The order in which preservatives induce protein aggregation is independent of the protein

    PubMed Central

    Bis, Regina L.; Mallela, Krishna M.G.

    2014-01-01

    Antimicrobial preservatives (APs) are included in liquid multi-dose protein formulations to combat the growth of microbes and bacteria. These compounds have been shown to cause protein aggregation, which leads to serious immunogenic and toxic side-effects in patients. Our earlier work on a model protein cytochrome c (Cyt c) demonstrated that APs cause protein aggregation in a specific manner. The aim of this study is to validate the conclusions obtained from our model protein studies on a pharmaceutical protein. Interferon α-2a (IFNA2) is available as a therapeutic treatment for numerous immune-compromised disorders including leukemia and hepatitis c, and APs have been used in its multi-dose formulation. Similar to Cyt c, APs induced IFNA2 aggregation, demonstrated by the loss of soluble monomer and increase in solution turbidity. The extent of IFNA2 aggregation increased with the increase in AP concentration. IFNA2 aggregation also depended on the nature of AP, and followed the order m-cresol > phenol > benzyl alcohol > phenoxyethanol. This specific order exactly matched with that observed for the model protein Cyt c. These and previously published results on antibodies and other recombinant proteins suggest that the general mechanism by which APs induce protein aggregation may be independent of the protein. PMID:24974985

  3. Physicochemical, bioactive, and sensory properties of persimmon-based ice cream: technique for order preference by similarity to ideal solution to determine optimum concentration.

    PubMed

    Karaman, Safa; Toker, Ömer Said; Yüksel, Ferhat; Çam, Mustafa; Kayacier, Ahmed; Dogan, Mahmut

    2014-01-01

    In the present study, persimmon puree was incorporated into the ice cream mix at different concentrations (8, 16, 24, 32, and 40%) and some physicochemical (dry matter, ash, protein, pH, sugar, fat, mineral, color, and viscosity), textural (hardness, stickiness, and work of penetration), bioactive (antiradical activity and total phenolic content), and sensory properties of samples were investigated. The technique for order preference by similarity to ideal solution approach was used for the determination of optimum persimmon puree concentration based on the sensory and bioactive characteristics of final products. Increase in persimmon puree resulted in a decrease in the dry matter, ash, fat, protein contents, and viscosity of ice cream mix. Glucose, fructose, sucrose, and lactose were determined to be major sugars in the ice cream samples including persimmon and increase in persimmon puree concentration increased the fructose and glucose content. Better melting properties and textural characteristics were observed for the samples with the addition of persimmon. Magnesium, K, and Ca were determined to be major minerals in the samples and only K concentration increased with the increase in persimmon content. Bioactive properties of ice cream samples improved and, in general, acetone-water extracts showed higher bioactivity compared with ones obtained using methanol-water extracts. The technique for order preference by similarity to ideal solution approach showed that the most preferred sample was the ice cream containing 24% persimmon puree. PMID:24268400

  4. 2, 2'- and 4, 4'-Cyanines are transporter-independent in vitro dopaminergic toxins with the specificity and mechanism of toxicity similar to MPP⁺.

    PubMed

    Kadigamuwa, Chamila C; Le, Viet Q; Wimalasena, Kandatege

    2015-11-01

    Specific uptake through dopamine transporter followed by the inhibition of the mitochondrial complex-I have been accepted as the cause of the specific dopaminergic toxicity of 1-methyl-4-phenylpyridinium (MPP(+) ). However, MPP(+) is taken up into many cell types through other transporters, suggesting that, in addition to the efficient uptake, intrinsic vulnerability of dopaminergic cells may also contribute to their high sensitivity to MPP(+) and similar toxins. To test this possibility, two simple cyanines were employed in a comparative study based on their unique characteristics and structural similarity to MPP(+) . Here, we show that they freely accumulate in dopaminergic (MN9D and SH-SY5Y) as well as in liver (HepG2) cells, but are specifically and highly toxic to dopaminergic cells with IC50s in the range of 50-100 nM, demonstrating that they are about 1000-fold more toxic than MPP(+) under similar experimental conditions. They cause mitochondrial depolarization non-specifically, but increase the reactive oxygen species specifically in dopaminergic cells leading to the apoptotic cell death parallel to MPP(+) . These and other findings suggest that the specific dopaminergic toxicity of these cyanines is due to the inherent vulnerability of dopaminergic cells toward mitochondrial toxins that lead to the excessive production of reactive oxygen species. Therefore, the specific dopaminergic toxicity of MPP(+) must also be, at least partly, due to the specific vulnerability of dopaminergic neurons. Thus, these cyanines could be stronger in vivo dopaminergic toxins than MPP(+) and their in vivo toxicities must be evaluated. Here, we show that cationic lipophilic cyanines with structural similarity to 1-methyl-4-phenylpyridinium (MPP(+) ) freely accumulate non-specifically, but only toxic to dopaminergic cells. They are 1000-fold more toxic than MPP(+) under similar conditions. They cause mitochondrial depolarization non-specifically, but increase the ROS

  5. 77 FR 52137 - Proposed Order and Request for Comment on a Petition From Certain Independent System Operators...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-28

    ...The Commodity Futures Trading Commission (``CFTC'' or ``Commission'') is requesting comment on a proposed exemption (the ``Proposed Exemption'') issued in response to a consolidated petition (``Petition'') \\1\\ from certain regional transmission organizations (``RTOs'') and independent system operators (``ISOs'') (collectively, ``Petitioners'') to exempt specified transactions from the......

  6. 78 FR 19879 - Final Order in Response to a Petition From Certain Independent System Operators and Regional...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-02

    ... Swap Participant,' and `Eligible Contract Participant,' '' 77 FR 30596, May 23, 2012. \\5\\ 7 U.S.C. 6(c... Section 4(c)(6) of the Act'' (``Proposed Order'') is available at 77 FR 52138, Aug. 28, 2012, and on the... differences in terminology used by the Requesting Parties and their respective regulators. \\27\\ See 77...

  7. Generation of 33 fs 93.5 W average power pulses from a third-order dispersion managed self-similar fiber amplifier.

    PubMed

    Liu, Yang; Li, Wenxue; Luo, Daping; Bai, Dongbi; Wang, Chao; Zeng, Heping

    2016-05-16

    We report on a high-power third-order dispersion managed amplification system that delivers 33-fs pulses of 93.5 W at a repetition rate of 55 MHz. A pair of grisms are used as the pre-chirper for optimizing the third order dispersion (TOD) to group velocity dispersion (GVD) ratio. Detail experiments show that the use of a grsim pre-chirper significantly enhances the quality of the compressed pulses. We demonstrate that the third order dispersion of both the amplifier and the compressor can be compensated for by the grisms. Furthermore, the nonlinear phase shift introduced by spectral asymmetry during amplification can be restrained. This type of scheme, applied in our experiment, can be used for further development of a high power laser with ultrashort pulse and wide spectrum. PMID:27409915

  8. Next-to-leading order QCD corrections to the single top quark production via model-independent tqg flavor-changing neutral-current couplings at hadron colliders

    SciTech Connect

    Gao Jun; Li Chongsheng; Zhang Jiajun; Zhu Huaxing

    2009-12-01

    We present the calculations of the complete next-to-leading order (NLO) QCD effects on the single top productions induced by model-independent tqg flavor-changing neutral-current couplings at hadron colliders. Our results show that, for the tcg coupling, the NLO QCD corrections can enhance the total cross sections by about 60% and 30%, and for the tug coupling by about 50% and 20% at the Tevatron and LHC, respectively, which means that the NLO corrections can increase the experimental sensitivity to the flavor-changing neutral-current couplings by about 10%-30%. Moreover, the NLO corrections reduce the dependence of the total cross sections on the renormalization or factorization scale significantly, which lead to increased confidence on the theoretical predictions. Besides, we also evaluate the NLO corrections to several important kinematic distributions, and find that for most of them the NLO corrections are almost the same and do not change the shape of the distributions.

  9. Next-to-leading order QCD predictions for t{gamma} associated production via model-independent flavor-changing neutral-current couplings at hadron colliders

    SciTech Connect

    Zhang Yue; Li Bohua; Li Chongsheng; Gao Jun; Zhu Huaxing

    2011-05-01

    We present the complete next-to-leading order (NLO) QCD predictions for the t{gamma} associated production induced by model-independent tq{gamma} and tqg flavor-changing neutral-current (FCNC) couplings at hadron colliders, respectively. We also consider the mixing effects between the tq{gamma} and tqg FCNC couplings for this process. Our results show that, for the tq{gamma} couplings, the NLO QCD corrections can enhance the total cross sections by about 50% and 40% at the Tevatron and LHC, respectively. Including the contributions from the tq{gamma}, tqg FCNC couplings and their mixing effects, the NLO QCD corrections can enhance the total cross sections by about 50% for the tu{gamma} and tug FCNC couplings, and by about 80% for the tc{gamma} and tcg FCNC couplings at the LHC, respectively. Moreover, the NLO corrections reduce the dependence of the total cross section on the renormalization and factorization scale significantly. We also evaluate the NLO corrections for several important kinematic distributions.

  10. Similar names for similar biologics.

    PubMed

    Casadevall, Nicole; Felix, Thomas; Strober, Bruce E; Warnock, David G

    2014-10-01

    Approval of the first biosimilar in the USA may occur by the end of 2014, yet a naming approach for biosimilars has not been determined. Biosimilars are highly similar to their biologic reference product but are not identical to it, because of their structural complexity and variations in manufacturing processes among companies. There is a need for a naming approach that can distinguish a biosimilar from its reference product and other biosimilars and ensure accurate tracing of adverse events (AEs) to the administered product. In contrast, generic small-molecule drugs are identical to their reference product and, therefore, share the same nonproprietary name. Clinical trials required to demonstrate biosimilarity for approval may not detect rare AEs or those occurring after prolonged use, and the incidence of such events may differ between a biosimilar and its reference product. The need for precise biologic identification is further underscored by the possibility of biosimilar interchangeability, a US designation that will allow substitution without prescriber intervention. For several biologics, the US Food and Drug Administration (FDA) has used a naming approach that adds a prefix to a common root nonproprietary name, enabling healthcare providers to distinguish between products, avoid medication errors, and facilitate pharmacovigilance. We recommend that the FDA implement a biosimilars naming policy that likewise would add a distinguishable prefix or suffix to the root nonproprietary name of the reference product. This approach would ensure that a biosimilar could be distinguished from its reference product and other biosimilars in patient records and pharmacovigilance databases/reports, facilitating accurate attribution of AEs. PMID:25001080

  11. Understanding independence

    NASA Astrophysics Data System (ADS)

    Annan, James; Hargreaves, Julia

    2016-04-01

    In order to perform any Bayesian processing of a model ensemble, we need a prior over the ensemble members. In the case of multimodel ensembles such as CMIP, the historical approach of ``model democracy'' (i.e. equal weight for all models in the sample) is no longer credible (if it ever was) due to model duplication and inbreeding. The question of ``model independence'' is central to the question of prior weights. However, although this question has been repeatedly raised, it has not yet been satisfactorily addressed. Here I will discuss the issue of independence and present a theoretical foundation for understanding and analysing the ensemble in this context. I will also present some simple examples showing how these ideas may be applied and developed.

  12. Order Effects of Learning with Modeling and Simulation Software on Field-Dependent and Field-Independent Children's Cognitive Performance: An Interaction Effect

    ERIC Educational Resources Information Center

    Angeli, Charoula; Valanides, Nicos; Polemitou, Eirini; Fraggoulidou, Elena

    2014-01-01

    The study examined the interaction between field dependence-independence (FD/I) and learning with modeling software and simulations, and their effect on children's performance. Participants were randomly assigned into two groups. Group A first learned with a modeling tool and then with simulations. Group B learned first with simulations and then…

  13. Are Independent Probes Truly Independent?

    ERIC Educational Resources Information Center

    Camp, Gino; Pecher, Diane; Schmidt, Henk G.; Zeelenberg, Rene

    2009-01-01

    The independent cue technique has been developed to test traditional interference theories against inhibition theories of forgetting. In the present study, the authors tested the critical criterion for the independence of independent cues: Studied cues not presented during test (and unrelated to test cues) should not contribute to the retrieval…

  14. Biosimilar insulins: how similar is similar?

    PubMed

    Heinemann, Lutz; Hompesch, Marcus

    2011-05-01

    Biosimilar insulins (BIs) are viewed as commercially attractive products by a number of companies. In order to obtain approval in the European Union or the United States, where there is not a single BI currently on the market, a manufacturer needs to demonstrate that a given BI has a safety and efficacy profile that is similar to that of the "original" insulin formulation that is already on the market. As trivial as this may appear at first glance, it is not trivial at all for a good number of reasons that will be discussed in this commentary. As with protein manufacturing, modifications in the structure of the insulin molecule can take place (which can have serious consequences for the biological effects induced), so a rigid and careful assessment is absolutely necessary. The example of Marvel's failed application with the European Medicines Agency provides insights into the regulatory and clinical challenges surrounding the matter of BI. Although a challenging BI approval process might be regarded as a hurdle to keep companies out of certain markets, it is fair to say that the potential safety and efficacy issues surrounding BI are substantial and relevant and do warrant a careful and evidence-driven approval process. PMID:21722590

  15. Salam's independence

    NASA Astrophysics Data System (ADS)

    Fraser, Gordon

    2009-01-01

    In his kind review of my biography of the Nobel laureate Abdus Salam (December 2008 pp45-46), John W Moffat wrongly claims that Salam had "independently thought of the idea of parity violation in weak interactions".

  16. Vertex similarity in networks

    NASA Astrophysics Data System (ADS)

    Leicht, E. A.; Holme, Petter; Newman, M. E. J.

    2006-02-01

    We consider methods for quantifying the similarity of vertices in networks. We propose a measure of similarity based on the concept that two vertices are similar if their immediate neighbors in the network are themselves similar. This leads to a self-consistent matrix formulation of similarity that can be evaluated iteratively using only a knowledge of the adjacency matrix of the network. We test our similarity measure on computer-generated networks for which the expected results are known, and on a number of real-world networks.

  17. Independence and Survival.

    ERIC Educational Resources Information Center

    James, H. Thomas

    Independent schools that are of viable size, well managed, and strategically located to meet competition will survive and prosper past the current financial crisis. We live in a complex technological society with insatiable demands for knowledgeable people to keep it running. The future will be marked by the orderly selection of qualified people,…

  18. 'Independence' Panorama

    NASA Technical Reports Server (NTRS)

    2005-01-01

    [figure removed for brevity, see original site] Click on the image for 'Independence' Panorama (QTVR)

    This is the Spirit 'Independence' panorama, acquired on martian days, or sols, 536 to 543 (July 6 to 13, 2005), from a position in the 'Columbia Hills' near the summit of 'Husband Hill.' The summit of 'Husband Hill' is the peak near the right side of this panorama and is about 100 meters (328 feet) away from the rover and about 30 meters (98 feet) higher in elevation. The rocky outcrops downhill and on the left side of this mosaic include 'Larry's Lookout' and 'Cumberland Ridge,' which Spirit explored in April, May, and June of 2005.

    The panorama spans 360 degrees and consists of 108 individual images, each acquired with five filters of the rover's panoramic camera. The approximate true color of the mosaic was generated using the camera's 750-, 530-, and 480-nanometer filters. During the 8 martian days, or sols, that it took to acquire this image, the lighting varied considerably, partly because of imaging at different times of sol, and partly because of small sol-to-sol variations in the dustiness of the atmosphere. These slight changes produced some image seams and rock shadows. These seams have been eliminated from the sky portion of the mosaic to better simulate the vista a person standing on Mars would see. However, it is often not possible or practical to smooth out such seams for regions of rock, soil, rover tracks or solar panels. Such is the nature of acquiring and assembling large panoramas from the rovers.

  19. Pyridoxal phosphate binding sites are similar in human heme-dependent and yeast heme-independent cystathionine beta-synthases. Evidence from 31P NMR and pulsed EPR spectroscopy that heme and PLP cofactors are not proximal in the human enzyme.

    PubMed

    Kabil, O; Toaka, S; LoBrutto, R; Shoemaker, R; Banerjee, R

    2001-06-01

    Two classes of cystathionine beta-synthases have been identified in eukaryotes, the heme-independent enzyme found in yeast and the heme-dependent form found in mammals. Both classes of enzymes catalyze a pyridoxal phosphate (PLP)-dependent condensation of serine and homocysteine to produce cystathionine. The role of the heme in the human enzyme and its location relative to the PLP in the active site are unknown. (31)P NMR spectroscopy revealed that spin-lattice relaxation rates of the phosphorus nucleus in PLP are similar in both the paramagnetic ferric (T(1) = 6.34 +/- 0.01 s) and the diamagnetic ferrous (T(1) = 5.04 +/- 0.06 s) enzyme, suggesting that the two cofactors are not proximal to each other. This is also supported by pulsed EPR studies that do not provide any evidence for strong or weak coupling between the phosphorus nucleus and the ferric iron. However, the (31)P signal in the reduced enzyme moved from 5.4 to 2.2 ppm, and the line width decreased from 73 to 16 Hz, providing the first structural evidence for transmission to the active site of an oxidation state change in the heme pocket. These results are consistent with a regulatory role for the heme as suggested by previous biochemical studies from our laboratory. The (31)P chemical shifts of the resting forms of the yeast and human enzymes are similar, suggesting that despite the difference in their heme content, the microenvironment of the PLP is similar in the two enzymes. The addition of the substrate, serine, resulted in an upfield shift of the phosphorus resonance in both enzymes, signaling formation of reaction intermediates. The resting enzyme spectra were recovered following addition of excess homocysteine, indicating that both enzymes retained catalytic activity during the course of the NMR experiment. PMID:11278994

  20. Gender similarities and differences.

    PubMed

    Hyde, Janet Shibley

    2014-01-01

    Whether men and women are fundamentally different or similar has been debated for more than a century. This review summarizes major theories designed to explain gender differences: evolutionary theories, cognitive social learning theory, sociocultural theory, and expectancy-value theory. The gender similarities hypothesis raises the possibility of theorizing gender similarities. Statistical methods for the analysis of gender differences and similarities are reviewed, including effect sizes, meta-analysis, taxometric analysis, and equivalence testing. Then, relying mainly on evidence from meta-analyses, gender differences are reviewed in cognitive performance (e.g., math performance), personality and social behaviors (e.g., temperament, emotions, aggression, and leadership), and psychological well-being. The evidence on gender differences in variance is summarized. The final sections explore applications of intersectionality and directions for future research. PMID:23808917

  1. Similarity by compression.

    PubMed

    Melville, James L; Riley, Jenna F; Hirst, Jonathan D

    2007-01-01

    We present a simple and effective method for similarity searching in virtual high-throughput screening, requiring only a string-based representation of the molecules (e.g., SMILES) and standard compression software, available on all modern desktop computers. This method utilizes the normalized compression distance, an approximation of the normalized information distance, based on the concept of Kolmogorov complexity. On representative data sets, we demonstrate that compression-based similarity searching can outperform standard similarity searching protocols, exemplified by the Tanimoto coefficient combined with a binary fingerprint representation and data fusion. Software to carry out compression-based similarity is available from our Web site at http://comp.chem.nottingham.ac.uk/download/zippity. PMID:17238245

  2. Representation is representation of similarities.

    PubMed

    Edelman, S

    1998-08-01

    Advanced perceptual systems are faced with the problem of securing a principled (ideally, veridical) relationship between the world and its internal representation. I propose a unified approach to visual representation, addressing the need for superordinate and basic-level categorization and for the identification of specific instances of familiar categories. According to the proposed theory, a shape is represented internally by the responses of a small number of tuned modules, each broadly selective for some reference shape, whose similarity to the stimulus it measures. This amounts to embedding the stimulus in a low-dimensional proximal shape space spanned by the outputs of the active modules. This shape space supports representations of distal shape similarities that are veridical as Shepard's (1968) second-order isomorphisms (i.e., correspondence between distal and proximal similarities among shapes, rather than between distal shapes and their proximal representations). Representation in terms of similarities to reference shapes supports processing (e.g., discrimination) of shapes that are radically different from the reference ones, without the need for the computationally problematic decomposition into parts required by other theories. Furthermore, a general expression for similarity between two stimuli, based on comparisons to reference shapes, can be used to derive models of perceived similarity ranging from continuous, symmetric, and hierarchical ones, as in multidimensional scaling (Shepard 1980), to discrete and nonhierarchical ones, as in the general contrast models (Shepard & Arabie 1979; Tversky 1977). PMID:10097019

  3. Multivariate Hypergeometric Similarity Measure

    PubMed Central

    Kaddi, Chanchala D.; Parry, R. Mitchell; Wang, May D.

    2016-01-01

    We propose a similarity measure based on the multivariate hypergeometric distribution for the pairwise comparison of images and data vectors. The formulation and performance of the proposed measure are compared with other similarity measures using synthetic data. A method of piecewise approximation is also implemented to facilitate application of the proposed measure to large samples. Example applications of the proposed similarity measure are presented using mass spectrometry imaging data and gene expression microarray data. Results from synthetic and biological data indicate that the proposed measure is capable of providing meaningful discrimination between samples, and that it can be a useful tool for identifying potentially related samples in large-scale biological data sets. PMID:24407308

  4. Similarity of molecular shape.

    PubMed

    Meyer, A Y; Richards, W G

    1991-10-01

    The similarity of one molecule to another has usually been defined in terms of electron densities or electrostatic potentials or fields. Here it is expressed as a function of the molecular shape. Formulations of similarity (S) reduce to very simple forms, thus rendering the computerised calculation straightforward and fast. 'Elements of similarity' are identified, in the same spirit as 'elements of chirality', except that the former are understood to be variable rather than present-or-absent. Methods are presented which bypass the time-consuming mathematical optimisation of the relative orientation of the molecules. Numerical results are presented and examined, with emphasis on the similarity of isomers. At the extreme, enantiomeric pairs are considered, where it is the dissimilarity (D = 1 - S) that is of consequence. We argue that chiral molecules can be graded by dissimilarity, and show that D is the shape-analog of the 'chirality coefficient', with the simple form of the former opening up numerical access to the latter. PMID:1770379

  5. The Qualitative Similarity Hypothesis

    ERIC Educational Resources Information Center

    Paul, Peter V.; Lee, Chongmin

    2010-01-01

    Evidence is presented for the qualitative similarity hypothesis (QSH) with respect to children and adolescents who are d/Deaf or hard of hearing. The primary focus is on the development of English language and literacy skills, and some information is provided on the acquisition of English as a second language. The QSH is briefly discussed within…

  6. Where Similarity Beats Redundancy: The Importance of Context, Higher Order Similarity, and Response Assignment

    ERIC Educational Resources Information Center

    Eidels, Ami; Townsend, James T.; Pomerantz, James R.

    2008-01-01

    People are especially efficient in processing certain visual stimuli such as human faces or good configurations. It has been suggested that topology and geometry play important roles in configural perception. Visual search is one area in which configurality seems to matter. When either of 2 target features leads to a correct response and the…

  7. Indexing Similar DNA Sequences

    NASA Astrophysics Data System (ADS)

    Huang, Songbo; Lam, T. W.; Sung, W. K.; Tam, S. L.; Yiu, S. M.

    To study the genetic variations of a species, one basic operation is to search for occurrences of patterns in a large number of very similar genomic sequences. To build an indexing data structure on the concatenation of all sequences may require a lot of memory. In this paper, we propose a new scheme to index highly similar sequences by taking advantage of the similarity among the sequences. To store r sequences with k common segments, our index requires only O(n + NlogN) bits of memory, where n is the total length of the common segments and N is the total length of the distinct regions in all texts. The total length of all sequences is rn + N, and any scheme to store these sequences requires Ω(n + N) bits. Searching for a pattern P of length m takes O(m + m logN + m log(rk)psc(P) + occlogn), where psc(P) is the number of prefixes of P that appear as a suffix of some common segments and occ is the number of occurrences of P in all sequences. In practice, rk ≤ N, and psc(P) is usually a small constant. We have implemented our solution and evaluated our solution using real DNA sequences. The experiments show that the memory requirement of our solution is much less than that required by BWT built on the concatenation of all sequences. When compared to the other existing solution (RLCSA), we use less memory with faster searching time.

  8. The qualitative similarity hypothesis.

    PubMed

    Paul, Peter V; Lee, Chongmin

    2010-01-01

    Evidence is presented for the qualitative similarity hypothesis (QSH) with respect to children and adolescents who are d/Deaf or hard of hearing. The primary focus is on the development of English language and literacy skills, and some information is provided on the acquisition of English as a second language. The QSH is briefly discussed within the purview of two groups of cognitive models: those that emphasize the cognitive development of individuals and those that pertain to disciplinary or knowledge structures. It is argued that the QSH has scientific merit with implications for classroom instruction. Future research should examine the validity of the QSH in other disciplines such as mathematics and science and should include perspectives from social as well as cognitive models. PMID:20415280

  9. Self Similar Optical Fiber

    NASA Astrophysics Data System (ADS)

    Lai, Zheng-Xuan

    This research proposes Self Similar optical fiber (SSF) as a new type of optical fiber. It has a special core that consists of self similar structure. Such a structure is obtained by following the formula for generating iterated function systems (IFS) in Fractal Theory. The resulted SSF can be viewed as a true fractal object in optical fibers. In addition, the method of fabricating SSF makes it possible to generate desired structures exponentially in numbers, whereas it also allows lower scale units in the structure to be reduced in size exponentially. The invention of SSF is expected to greatly ease the production of optical fiber when a large number of small hollow structures are needed in the core of the optical fiber. This dissertation will analyze the core structure of SSF based on fractal theory. Possible properties from the structural characteristics and the corresponding applications are explained. Four SSF samples were obtained through actual fabrication in a laboratory environment. Different from traditional conductive heating fabrication system, I used an in-house designed furnace that incorporated a radiation heating method, and was equipped with automated temperature control system. The obtained samples were examined through spectrum tests. Results from the tests showed that SSF does have the optical property of delivering light in a certain wavelength range. However, SSF as a new type of optical fiber requires a systematic research to find out the theory that explains its structure and the associated optical properties. The fabrication and quality of SSF also needs to be improved for product deployment. As a start of this extensive research, this dissertation work opens the door to a very promising new area in optical fiber research.

  10. Independence Generalizing Monotone and Boolean Independences

    NASA Astrophysics Data System (ADS)

    Hasebe, Takahiro

    2011-01-01

    We define conditionally monotone independence in two states which interpolates monotone and Boolean ones. This independence is associative, and therefore leads to a natural probability theory in a non-commutative algebra.

  11. Using Reaction Mechanism to Measure Enzyme Similarity

    PubMed Central

    O’Boyle, Noel M.; Holliday, Gemma L.; Almonacid, Daniel E.; Mitchell, John B.O.

    2012-01-01

    Summary The concept of reaction similarity has been well-studied in terms of the overall transformation associated with a reaction, but not in terms of mechanism. We present the first method to give a quantitative measure of the similarity of reactions based upon their explicit mechanisms. Two approaches are presented to measure the similarity between individual steps of mechanisms: a fingerprint-based approach which incorporates relevant information on each mechanistic step, and an approach based only on bond formation, cleavage and changes in order. The overall similarity for two reaction mechanisms is then calculated using the Needleman-Wunsch alignment algorithm. An analysis of MACiE, a database of enzyme mechanisms, using our measure of similarity identifies some examples of convergent evolution of chemical mechanism. In many cases mechanism similarity is not reflected by similarity according to the EC system of enzyme classification. In particular, little mechanistic information is conveyed by the class level of the EC. PMID:17400244

  12. Independent Peer Reviews

    SciTech Connect

    2012-03-16

    Independent Assessments: DOE's Systems Integrator convenes independent technical reviews to gauge progress toward meeting specific technical targets and to provide technical information necessary for key decisions.

  13. Frame independent cosmological perturbations

    SciTech Connect

    Prokopec, Tomislav; Weenink, Jan E-mail: j.g.weenink@uu.nl

    2013-09-01

    We compute the third order gauge invariant action for scalar-graviton interactions in the Jordan frame. We demonstrate that the gauge invariant action for scalar and tensor perturbations on one physical hypersurface only differs from that on another physical hypersurface via terms proportional to the equation of motion and boundary terms, such that the evolution of non-Gaussianity may be called unique. Moreover, we demonstrate that the gauge invariant curvature perturbation and graviton on uniform field hypersurfaces in the Jordan frame are equal to their counterparts in the Einstein frame. These frame independent perturbations are therefore particularly useful in relating results in different frames at the perturbative level. On the other hand, the field perturbation and graviton on uniform curvature hypersurfaces in the Jordan and Einstein frame are non-linearly related, as are their corresponding actions and n-point functions.

  14. Variable Order and Distributed Order Fractional Operators

    NASA Technical Reports Server (NTRS)

    Lorenzo, Carl F.; Hartley, Tom T.

    2002-01-01

    Many physical processes appear to exhibit fractional order behavior that may vary with time or space. The continuum of order in the fractional calculus allows the order of the fractional operator to be considered as a variable. This paper develops the concept of variable and distributed order fractional operators. Definitions based on the Riemann-Liouville definitions are introduced and behavior of the operators is studied. Several time domain definitions that assign different arguments to the order q in the Riemann-Liouville definition are introduced. For each of these definitions various characteristics are determined. These include: time invariance of the operator, operator initialization, physical realization, linearity, operational transforms. and memory characteristics of the defining kernels. A measure (m2) for memory retentiveness of the order history is introduced. A generalized linear argument for the order q allows the concept of "tailored" variable order fractional operators whose a, memory may be chosen for a particular application. Memory retentiveness (m2) and order dynamic behavior are investigated and applications are shown. The concept of distributed order operators where the order of the time based operator depends on an additional independent (spatial) variable is also forwarded. Several definitions and their Laplace transforms are developed, analysis methods with these operators are demonstrated, and examples shown. Finally operators of multivariable and distributed order are defined in their various applications are outlined.

  15. Criteria for dynamic similarity in bouncing gaits.

    PubMed

    Bullimore, Sharon R; Donelan, J Maxwell

    2008-01-21

    Animals of different sizes tend to move in a dynamically similar manner when travelling at speeds corresponding to equal values of a dimensionless parameter (DP) called the Froude number. Consequently, the Froude number has been widely used for defining equivalent speeds and predicting speeds of locomotion by extinct species and on other planets. However, experiments using simulated reduced gravity have demonstrated that equality of the Froude number does not guarantee dynamic similarity. This has cast doubt upon the usefulness of the Froude number in locomotion research. Here we use dimensional analysis of the planar spring-mass model, combined with Buckingham's Pi-Theorem, to demonstrate that four DPs must be equal for dynamic similarity in bouncing gaits such as trotting, hopping and bipedal running. This can be reduced to three DPs by applying the constraint of maintaining a constant average speed of locomotion. Sensitivity analysis indicates that all of these DPs are important for predicting dynamic similarity. We show that the reason humans do not run in a dynamically similar manner at equal Froude number in different levels of simulated reduced gravity is that dimensionless leg stiffness decreases as gravity increases. The reason that the Froude number can predict dynamic similarity in Earth gravity is that dimensionless leg stiffness and dimensionless vertical landing speed are both independent of size. In conclusion, although equal Froude number is not sufficient for dynamic similarity, it is a necessary condition. Therefore, to detect fundamental differences in locomotion, animals of different sizes should be compared at equal Froude number, so that they can be as close to dynamic similarity as possible. More generally, the concept of dynamic similarity provides a powerful framework within which similarities and differences in locomotion can be interpreted. PMID:17983630

  16. Independent Schools - Independent Thinking - Independent Art: Testing Assumptions.

    ERIC Educational Resources Information Center

    Carnes, Virginia

    This study consists of a review of selected educational reform issues from the past 10 years that deal with changing attitudes towards art and art instruction in the context of independent private sector schools. The major focus of the study is in visual arts and examines various programs and initiatives with an art focus. Programs include…

  17. Exemplar Similarity and Rule Application

    ERIC Educational Resources Information Center

    Hahn, Ulrike; Prat-Sala, Merce; Pothos, Emmanuel M.; Brumby, Duncan P.

    2010-01-01

    We report four experiments examining effects of instance similarity on the application of simple explicit rules. We found effects of similarity to illustrative exemplars in error patterns and reaction times. These effects arose even though participants were given perfectly predictive rules, the similarity manipulation depended entirely on…

  18. Functional Similarity and Interpersonal Attraction.

    ERIC Educational Resources Information Center

    Neimeyer, Greg J.; Neimeyer, Robert A.

    1981-01-01

    Students participated in dyadic disclosure exercises over a five-week period. Results indicated members of high functional similarity dyads evidenced greater attraction to one another than did members of low functional similarity dyads. "Friendship" pairs of male undergraduates displayed greater functional similarity than did "nominal" pairs from…

  19. Acoustic Similarity and Dichotic Listening.

    ERIC Educational Resources Information Center

    Benson, Peter

    1978-01-01

    An experiment tests conjectures that right ear advantage (REA) has an auditory origin in competition or interference between acoustically similar stimuli and that feature-sharing effect (FSE) has its origin in assignment of features of phonetically similar stimuli. No effect on the REA for acoustic similarity, and a clear effect of acoustic…

  20. Generalized structure of higher order nonclassicality

    NASA Astrophysics Data System (ADS)

    Verma, Amit; Pathak, Anirban

    2010-02-01

    A generalized notion of higher order nonclassicality (in terms of higher order moments) is introduced. Under this generalized framework of higher order nonclassicality, conditions of higher order squeezing and higher order subpoissonian photon statistics are derived. A simpler form of the Hong-Mandel higher order squeezing criterion is derived under this framework by using an operator ordering theorem introduced by us in [A. Pathak, J. Phys. A 33 (2000) 5607]. It is also generalized for multi-photon Bose operators of Brandt and Greenberg. Similarly, condition for higher order subpoissonian photon statistics is derived by normal ordering of higher powers of number operator. Further, with the help of simple density matrices, it is shown that the higher order antibunching (HOA) and higher order subpoissonian photon statistics (HOSPS) are not the manifestation of the same phenomenon and consequently it is incorrect to use the condition of HOA as a test of HOSPS. It is also shown that the HOA and HOSPS may exist even in absence of the corresponding lower order phenomenon. Binomial state, nonlinear first order excited squeezed state (NLESS) and nonlinear vacuum squeezed state (NLVSS) are used as examples of quantum state and it is shown that these states may show higher order nonclassical characteristics. It is observed that the Binomial state which is always antibunched, is not always higher order squeezed and NLVSS which shows higher order squeezing does not show HOSPS and HOA. The opposite is observed in NLESS and consequently it is established that the HOSPS and HOS are two independent signatures of higher order nonclassicality.

  1. Guide to good practices for independent verification

    SciTech Connect

    1998-12-01

    This Guide to Good Practices is written to enhance understanding of, and provide direction for, Independent Verification, Chapter X of Department of Energy (DOE) Order 5480.19, Conduct of Operations Requirements for DOE Facilities. The practices in this guide should be considered when planning or reviewing independent verification activities. Contractors are advised to adopt procedures that meet the intent of DOE Order 5480.19. Independent Verification is an element of an effective Conduct of Operations program. The complexity and array of activities performed in DOE facilities dictate the necessity for coordinated independent verification activities to promote safe and efficient operations.

  2. The Case of the Similar Trees.

    ERIC Educational Resources Information Center

    Meyer, Rochelle Wilson

    1982-01-01

    A possible logical flaw based on similar triangles is discussed with the Sherlock Holmes mystery, "The Muskgrave Ritual." The possible flaw has to do with the need for two trees to have equal growth rates over a 250-year period in order for the solution presented to work. (MP)

  3. A framework for profile similarity: integrating similarity, normativeness, and distinctiveness.

    PubMed

    Furr, R Michael

    2008-10-01

    Many questions in personality psychology lend themselves to the analysis of profile similarity. A profile approach to issues such as personality judgment, personality similarity, behavioral consistency, developmental stability, and person-environment fit is intuitively appealing. However, it entails conceptual and statistical challenges arising from the overlap among profile similarity and normativeness, which presents potential confounds and potential opportunities. This article describes the normativeness problem, articulating the need to evaluate profile similarity alongside normativeness and distinctiveness. It presents conceptual and psychometric foundations of a framework differentiating these elements for pairs of profiles. It derives two models from this framework, and it discusses the application of their components to a variety of research domains. Finally, it presents recommendations and implications regarding the use of these components and profile similarity more generally. This approach can reveal and manage potential confounds, and it can provide theoretical insights that might otherwise be overlooked. PMID:18705644

  4. After order 636

    SciTech Connect

    Katz, M.G.

    1995-02-01

    Through its Order 636, the Federal Energy Regulatory Commission (FERC) completed a restructuring of the natural gas industry. The order severed the last links in the chain linking gas producers to pipeline companies to local gas distribution companies (LDCs) to customers. Before Order 636 took effect, many predicted electric power generation, particularly by cogenerators and independent power producers (IPPs), would be a major growth area for natural gas. In fact, what Order 636 has shown is, that timing is everything, and that it`s difficult to sort out the effect of one agent of change when many others are at work.

  5. Order Theoretical Semantic Recommendation

    SciTech Connect

    Joslyn, Cliff A.; Hogan, Emilie A.; Paulson, Patrick R.; Peterson, Elena S.; Stephan, Eric G.; Thomas, Dennis G.

    2013-07-23

    Mathematical concepts of order and ordering relations play multiple roles in semantic technologies. Discrete totally ordered data characterize both input streams and top-k rank-ordered recommendations and query output, while temporal attributes establish numerical total orders, either over time points or in the more complex case of startend temporal intervals. But also of note are the fully partially ordered data, including both lattices and non-lattices, which actually dominate the semantic strcuture of ontological systems. Scalar semantic similarities over partially-ordered semantic data are traditionally used to return rank-ordered recommendations, but these require complementation with true metrics available over partially ordered sets. In this paper we report on our work in the foundations of partial order measurement in ontologies, with application to top-k semantic recommendation in workflows.

  6. Homology-independent metrics for comparative genomics.

    PubMed

    Coutinho, Tarcisio José Domingos; Franco, Glória Regina; Lobo, Francisco Pereira

    2015-01-01

    A mainstream procedure to analyze the wealth of genomic data available nowadays is the detection of homologous regions shared across genomes, followed by the extraction of biological information from the patterns of conservation and variation observed in such regions. Although of pivotal importance, comparative genomic procedures that rely on homology inference are obviously not applicable if no homologous regions are detectable. This fact excludes a considerable portion of "genomic dark matter" with no significant similarity - and, consequently, no inferred homology to any other known sequence - from several downstream comparative genomic methods. In this review we compile several sequence metrics that do not rely on homology inference and can be used to compare nucleotide sequences and extract biologically meaningful information from them. These metrics comprise several compositional parameters calculated from sequence data alone, such as GC content, dinucleotide odds ratio, and several codon bias metrics. They also share other interesting properties, such as pervasiveness (patterns persist on smaller scales) and phylogenetic signal. We also cite examples where these homology-independent metrics have been successfully applied to support several bioinformatics challenges, such as taxonomic classification of biological sequences without homology inference. They where also used to detect higher-order patterns of interactions in biological systems, ranging from detecting coevolutionary trends between the genomes of viruses and their hosts to characterization of gene pools of entire microbial communities. We argue that, if correctly understood and applied, homology-independent metrics can add important layers of biological information in comparative genomic studies without prior homology inference. PMID:26029354

  7. Self-similarity in Laplacian growth

    SciTech Connect

    Mineev-weinstein, Mark; Zabrodin, Anton; Abanov, Artem

    2008-01-01

    We consider Laplacian Growth of self-similar domains in different geometries. Self-similarity determines the analytic structure of the Schwarz function of the moving boundary. The knowledge of this analytic structure allows us to derive the integral equation for the conformal map. It is shown that solutions to the integral equation obey also a second-order differential equation which is the 1D Schroedinger equation with the sinh{sup -2}-potential. The solutions, which are expressed through the Gauss hypergeometric function, characterize the geometry of self-similar patterns in a wedge. We also find the potential for the Coulomb gas representation of the self-similar Laplacian growth in a wedge and calculate the corresponding free energy.

  8. Dynamic similarity in erosional processes

    USGS Publications Warehouse

    Scheidegger, A.E.

    1963-01-01

    A study is made of the dynamic similarity conditions obtaining in a variety of erosional processes. The pertinent equations for each type of process are written in dimensionless form; the similarity conditions can then easily be deduced. The processes treated are: raindrop action, slope evolution and river erosion. ?? 1963 Istituto Geofisico Italiano.

  9. Multivariate Time Series Similarity Searching

    PubMed Central

    Wang, Jimin; Zhu, Yuelong; Li, Shijin; Wan, Dingsheng; Zhang, Pengcheng

    2014-01-01

    Multivariate time series (MTS) datasets are very common in various financial, multimedia, and hydrological fields. In this paper, a dimension-combination method is proposed to search similar sequences for MTS. Firstly, the similarity of single-dimension series is calculated; then the overall similarity of the MTS is obtained by synthesizing each of the single-dimension similarity based on weighted BORDA voting method. The dimension-combination method could use the existing similarity searching method. Several experiments, which used the classification accuracy as a measure, were performed on six datasets from the UCI KDD Archive to validate the method. The results show the advantage of the approach compared to the traditional similarity measures, such as Euclidean distance (ED), cynamic time warping (DTW), point distribution (PD), PCA similarity factor (SPCA), and extended Frobenius norm (Eros), for MTS datasets in some ways. Our experiments also demonstrate that no measure can fit all datasets, and the proposed measure is a choice for similarity searches. PMID:24895665

  10. Multivariate time series similarity searching.

    PubMed

    Wang, Jimin; Zhu, Yuelong; Li, Shijin; Wan, Dingsheng; Zhang, Pengcheng

    2014-01-01

    Multivariate time series (MTS) datasets are very common in various financial, multimedia, and hydrological fields. In this paper, a dimension-combination method is proposed to search similar sequences for MTS. Firstly, the similarity of single-dimension series is calculated; then the overall similarity of the MTS is obtained by synthesizing each of the single-dimension similarity based on weighted BORDA voting method. The dimension-combination method could use the existing similarity searching method. Several experiments, which used the classification accuracy as a measure, were performed on six datasets from the UCI KDD Archive to validate the method. The results show the advantage of the approach compared to the traditional similarity measures, such as Euclidean distance (ED), cynamic time warping (DTW), point distribution (PD), PCA similarity factor (SPCA), and extended Frobenius norm (Eros), for MTS datasets in some ways. Our experiments also demonstrate that no measure can fit all datasets, and the proposed measure is a choice for similarity searches. PMID:24895665

  11. Thermodynamic similarity of physical systems

    NASA Astrophysics Data System (ADS)

    Ciccariello, Salvino

    2016-02-01

    Two different physical systems A and B are said to be thermodynamically similar if one of the thermodynamic potentials of system A is proportional to the corresponding potential of B after expressing the state variables of system A in terms of those of B by a transformation reversible throughout the state variables' domain. The thermodynamic similarity has a transitive nature so that physical systems divide into classes of thermodynamically similar systems that have similar phase diagrams. Considering the simplest physical systems, one finds that a class of thermodynamically similar systems is formed by the ideal classical gas, the Fermi and the Bose ideal quantum gases, whatever the dimensions of the confining spaces, and the one dimensional hard rod gas. Another class is formed by the physical systems characterized by interactions that coincide by a scaling of the distance and the coupling constant.

  12. Two perspectives on similarity between words

    NASA Astrophysics Data System (ADS)

    Frisch, Stefan A.

    2003-10-01

    This presentation examines the similarity between words from both bottom up (phonetic) and top down (phonological/psycholinguistic) perspectives. From the phonological perspective, the influence of structure on similarity is explored using metalinguistic acceptability judgments for multisyllabic nonwords. Results from an experiment suggest that subjects try to align novel words with known words in order to maximize similarities while minimizing dissimilarities. This finding parallels results from psychology on similarity judgments for visual scenes. From the phonetic perspective, the influence of similar gestures on speech error rates is examined using ultrasound measurement of tongue position. In a pilot experiment, subjects, produced tongue twisters containing words where onset and vowel phonemes had similar gestures (e.g., tip, comb) and where the onset and vowel had dissimilar gestures (e.g., tube, keep). Preliminary results suggest that misarticulations are more frequent in the context of dissimilar gestures (e.g., in the tongue twister tip cape keep tape, error rates are higher for /k/ than /t/). These errors appear to be gestural interactions rather than errors at the phonemic or featural level of phonological spellout. Together, these two experiments indicate that similarity relations between words are found at multiple levels, any which are potentially relevant to the structure of phonological systems.

  13. Hiring and Retaining Great Independent School Teachers

    ERIC Educational Resources Information Center

    Balossi, Matt; Hernández, Natalie R.

    2016-01-01

    While numerous studies measure teacher effectiveness in public schools, there is little research on teacher quality among independent schools. In fact, the topic of teacher quality in public schools receives widespread media coverage, funding, and special interest. In order to better understand how independent schools describe high-quality…

  14. Order Up

    ERIC Educational Resources Information Center

    Gibeault, Michael

    2005-01-01

    Change orders. The words can turn the stomachs of administrators. Horror stories about change orders create fear and distrust among school officials, designers and builders. Can change orders be avoided? If car manufacturers can produce millions of intricately designed vehicles, why can't the same quality control be achieved on a construction…

  15. Semantic Similarity in Biomedical Ontologies

    PubMed Central

    Pesquita, Catia; Faria, Daniel; Falcão, André O.; Lord, Phillip; Couto, Francisco M.

    2009-01-01

    In recent years, ontologies have become a mainstream topic in biomedical research. When biological entities are described using a common schema, such as an ontology, they can be compared by means of their annotations. This type of comparison is called semantic similarity, since it assesses the degree of relatedness between two entities by the similarity in meaning of their annotations. The application of semantic similarity to biomedical ontologies is recent; nevertheless, several studies have been published in the last few years describing and evaluating diverse approaches. Semantic similarity has become a valuable tool for validating the results drawn from biomedical studies such as gene clustering, gene expression data analysis, prediction and validation of molecular interactions, and disease gene prioritization. We review semantic similarity measures applied to biomedical ontologies and propose their classification according to the strategies they employ: node-based versus edge-based and pairwise versus groupwise. We also present comparative assessment studies and discuss the implications of their results. We survey the existing implementations of semantic similarity measures, and we describe examples of applications to biomedical research. This will clarify how biomedical researchers can benefit from semantic similarity measures and help them choose the approach most suitable for their studies. Biomedical ontologies are evolving toward increased coverage, formality, and integration, and their use for annotation is increasingly becoming a focus of both effort by biomedical experts and application of automated annotation procedures to create corpora of higher quality and completeness than are currently available. Given that semantic similarity measures are directly dependent on these evolutions, we can expect to see them gaining more relevance and even becoming as essential as sequence similarity is today in biomedical research. PMID:19649320

  16. Renewing the respect for similarity

    PubMed Central

    Edelman, Shimon; Shahbazi, Reza

    2012-01-01

    In psychology, the concept of similarity has traditionally evoked a mixture of respect, stemming from its ubiquity and intuitive appeal, and concern, due to its dependence on the framing of the problem at hand and on its context. We argue for a renewed focus on similarity as an explanatory concept, by surveying established results and new developments in the theory and methods of similarity-preserving associative lookup and dimensionality reduction—critical components of many cognitive functions, as well as of intelligent data management in computer vision. We focus in particular on the growing family of algorithms that support associative memory by performing hashing that respects local similarity, and on the uses of similarity in representing structured objects and scenes. Insofar as these similarity-based ideas and methods are useful in cognitive modeling and in AI applications, they should be included in the core conceptual toolkit of computational neuroscience. In support of this stance, the present paper (1) offers a discussion of conceptual, mathematical, computational, and empirical aspects of similarity, as applied to the problems of visual object and scene representation, recognition, and interpretation, (2) mentions some key computational problems arising in attempts to put similarity to use, along with their possible solutions, (3) briefly states a previously developed similarity-based framework for visual object representation, the Chorus of Prototypes, along with the empirical support it enjoys, (4) presents new mathematical insights into the effectiveness of this framework, derived from its relationship to locality-sensitive hashing (LSH) and to concomitant statistics, (5) introduces a new model, the Chorus of Relational Descriptors (ChoRD), that extends this framework to scene representation and interpretation, (6) describes its implementation and testing, and finally (7) suggests possible directions in which the present research program can be

  17. Coupled attribute similarity learning on categorical data.

    PubMed

    Wang, Can; Dong, Xiangjun; Zhou, Fei; Cao, Longbing; Chi, Chi-Hung

    2015-04-01

    Attribute independence has been taken as a major assumption in the limited research that has been conducted on similarity analysis for categorical data, especially unsupervised learning. However, in real-world data sources, attributes are more or less associated with each other in terms of certain coupling relationships. Accordingly, recent works on attribute dependency aggregation have introduced the co-occurrence of attribute values to explore attribute coupling, but they only present a local picture in analyzing categorical data similarity. This is inadequate for deep analysis, and the computational complexity grows exponentially when the data scale increases. This paper proposes an efficient data-driven similarity learning approach that generates a coupled attribute similarity measure for nominal objects with attribute couplings to capture a global picture of attribute similarity. It involves the frequency-based intra-coupled similarity within an attribute and the inter-coupled similarity upon value co-occurrences between attributes, as well as their integration on the object level. In particular, four measures are designed for the inter-coupled similarity to calculate the similarity between two categorical values by considering their relationships with other attributes in terms of power set, universal set, joint set, and intersection set. The theoretical analysis reveals the equivalent accuracy and superior efficiency of the measure based on the intersection set, particularly for large-scale data sets. Intensive experiments of data structure and clustering algorithms incorporating the coupled dissimilarity metric achieve a significant performance improvement on state-of-the-art measures and algorithms on 13 UCI data sets, which is confirmed by the statistical analysis. The experiment results show that the proposed coupled attribute similarity is generic, and can effectively and efficiently capture the intrinsic and global interactions within and between

  18. Self-similar aftershock rates.

    PubMed

    Davidsen, Jörn; Baiesi, Marco

    2016-08-01

    In many important systems exhibiting crackling noise-an intermittent avalanchelike relaxation response with power-law and, thus, self-similar distributed event sizes-the "laws" for the rate of activity after large events are not consistent with the overall self-similar behavior expected on theoretical grounds. This is particularly true for the case of seismicity, and a satisfying solution to this paradox has remained outstanding. Here, we propose a generalized description of the aftershock rates which is both self-similar and consistent with all other known self-similar features. Comparing our theoretical predictions with high-resolution earthquake data from Southern California we find excellent agreement, providing particularly clear evidence for a unified description of aftershocks and foreshocks. This may offer an improved framework for time-dependent seismic hazard assessment and earthquake forecasting. PMID:27627324

  19. Independence of Internal Auditors.

    ERIC Educational Resources Information Center

    Montondon, Lucille; Meixner, Wilda F.

    1993-01-01

    A survey of 288 college and university auditors investigated patterns in their appointment, reporting, and supervisory practices as indicators of independence and objectivity. Results indicate a weakness in the positioning of internal auditing within institutions, possibly compromising auditor independence. Because the auditing function is…

  20. American Independence. Fifth Grade.

    ERIC Educational Resources Information Center

    Crosby, Annette

    This fifth grade teaching unit covers early conflicts between the American colonies and Britain, battles of the American Revolutionary War, and the Declaration of Independence. Knowledge goals address the pre-revolutionary acts enforced by the British, the concepts of conflict and independence, and the major events and significant people from the…

  1. Fostering Musical Independence

    ERIC Educational Resources Information Center

    Shieh, Eric; Allsup, Randall Everett

    2016-01-01

    Musical independence has always been an essential aim of musical instruction. But this objective can refer to everything from high levels of musical expertise to more student choice in the classroom. While most conceptualizations of musical independence emphasize the demonstration of knowledge and skills within particular music traditions, this…

  2. Centering on Independent Study.

    ERIC Educational Resources Information Center

    Miller, Stephanie

    Independent study is an instructional approach that can have enormous power in the classroom. It can be used successfully with students at all ability levels, even though it is often associated with gifted students. Independent study is an opportunity for students to study a subject of their own choosing under the guidance of a teacher. The…

  3. Mechanisms for similarity matching in disparity measurement

    PubMed Central

    Goutcher, Ross; Hibbard, Paul B.

    2014-01-01

    Early neural mechanisms for the measurement of binocular disparity appear to operate in a manner consistent with cross-correlation-like processes. Consequently, cross-correlation, or cross-correlation-like procedures have been used in a range of models of disparity measurement. Using such procedures as the basis for disparity measurement creates a preference for correspondence solutions that maximize the similarity between local left and right eye image regions. Here, we examine how observers’ perception of depth in an ambiguous stereogram is affected by manipulations of luminance and orientation-based image similarity. Results show a strong effect of coarse-scale luminance similarity manipulations, but a relatively weak effect of finer-scale manipulations of orientation similarity. This is in contrast to the measurements of depth obtained from a standard cross-correlation model. This model shows strong effects of orientation similarity manipulations and weaker effects of luminance similarity. In order to account for these discrepancies, the standard cross-correlation approach may be modified to include an initial spatial frequency filtering stage. The performance of this adjusted model most closely matches human psychophysical data when spatial frequency filtering favors coarser scales. This is consistent with the operation of disparity measurement processes where spatial frequency and disparity tuning are correlated, or where disparity measurement operates in a coarse-to-fine manner. PMID:24409163

  4. Similarity Metrics for Closed Loop Dynamic Systems

    NASA Technical Reports Server (NTRS)

    Whorton, Mark S.; Yang, Lee C.; Bedrossian, Naz; Hall, Robert A.

    2008-01-01

    To what extent and in what ways can two closed-loop dynamic systems be said to be "similar?" This question arises in a wide range of dynamic systems modeling and control system design applications. For example, bounds on error models are fundamental to the controller optimization with modern control design methods. Metrics such as the structured singular value are direct measures of the degree to which properties such as stability or performance are maintained in the presence of specified uncertainties or variations in the plant model. Similarly, controls-related areas such as system identification, model reduction, and experimental model validation employ measures of similarity between multiple realizations of a dynamic system. Each area has its tools and approaches, with each tool more or less suited for one application or the other. Similarity in the context of closed-loop model validation via flight test is subtly different from error measures in the typical controls oriented application. Whereas similarity in a robust control context relates to plant variation and the attendant affect on stability and performance, in this context similarity metrics are sought that assess the relevance of a dynamic system test for the purpose of validating the stability and performance of a "similar" dynamic system. Similarity in the context of system identification is much more relevant than are robust control analogies in that errors between one dynamic system (the test article) and another (the nominal "design" model) are sought for the purpose of bounding the validity of a model for control design and analysis. Yet system identification typically involves open-loop plant models which are independent of the control system (with the exception of limited developments in closed-loop system identification which is nonetheless focused on obtaining open-loop plant models from closed-loop data). Moreover the objectives of system identification are not the same as a flight test and

  5. Quantifying Similarity in Seismic Polarizations

    NASA Astrophysics Data System (ADS)

    Eaton, D. W. S.; Jones, J. P.; Caffagni, E.

    2015-12-01

    Measuring similarity in seismic attributes can help identify tremor, low S/N signals, and converted or reflected phases, in addition to diagnosing site noise and sensor misalignment in arrays. Polarization analysis is a widely accepted method for studying the orientation and directional characteristics of seismic phases via. computed attributes, but similarity is ordinarily discussed using qualitative comparisons with reference values. Here we introduce a technique for quantitative polarization similarity that uses weighted histograms computed in short, overlapping time windows, drawing on methods adapted from the image processing and computer vision literature. Our method accounts for ambiguity in azimuth and incidence angle and variations in signal-to-noise (S/N) ratio. Using records of the Mw=8.3 Sea of Okhotsk earthquake from CNSN broadband sensors in British Columbia and Yukon Territory, Canada, and vertical borehole array data from a monitoring experiment at Hoadley gas field, central Alberta, Canada, we demonstrate that our method is robust to station spacing. Discrete wavelet analysis extends polarization similarity to the time-frequency domain in a straightforward way. Because histogram distance metrics are bounded by [0 1], clustering allows empirical time-frequency separation of seismic phase arrivals on single-station three-component records. Array processing for automatic seismic phase classification may be possible using subspace clustering of polarization similarity, but efficient algorithms are required to reduce the dimensionality.

  6. Self-similar mitochondrial DNA.

    PubMed

    Oiwa, Nestor N; Glazier, James A

    2004-01-01

    We show that repeated sequences, like palindromes (local repetitions) and homologies between two different nucleotide sequences (motifs along the genome), compose a self-similar (fractal) pattern in mitochondrial DNA. This self-similarity comes from the looplike structures distributed along the genome. The looplike structures generate scaling laws in a pseudorandom DNA walk constructed from the sequence, called a Lévy flight. We measure the scaling laws from the generalized fractal dimension and singularity spectrum for mitochondrial DNA walks for 35 different species. In particular, we report characteristic loop distributions for mammal mitochondrial genomes. PMID:15371639

  7. Order Nidovirales

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter, entitled "Order Nidovirales", is for inclusion in the Ninth Report of the International Committee on Taxonomy of Viruses (ICTV), to be published as both a single volume text and online. The chapter details the taxonomy of members of the Nidovirus order, including family Arteriviridae o...

  8. Mean Similarity Analysis Version 6

    EPA Science Inventory

    MEANSIM6 contains software for Mean Similarity Analysis, a method of assessing the strength of a classification of many objects (sites) into a relatively small number of groups. Classification strength is measured by the extent to which sites within the same groups are more simil...

  9. What Difference Reveals about Similarity

    ERIC Educational Resources Information Center

    Sagi, Eyal; Gentner, Dedre; Lovett, Andrew

    2012-01-01

    Detecting that two images are different is faster for highly dissimilar images than for highly similar images. Paradoxically, we showed that the reverse occurs when people are asked to describe "how" two images differ--that is, to state a difference between two images. Following structure-mapping theory, we propose that this disassociation arises…

  10. Similarity Measures for Comparing Biclusterings.

    PubMed

    Horta, Danilo; Campello, Ricardo J G B

    2014-01-01

    The comparison of ordinary partitions of a set of objects is well established in the clustering literature, which comprehends several studies on the analysis of the properties of similarity measures for comparing partitions. However, similarity measures for clusterings are not readily applicable to biclusterings, since each bicluster is a tuple of two sets (of rows and columns), whereas a cluster is only a single set (of rows). Some biclustering similarity measures have been defined as minor contributions in papers which primarily report on proposals and evaluation of biclustering algorithms or comparative analyses of biclustering algorithms. The consequence is that some desirable properties of such measures have been overlooked in the literature. We review 14 biclustering similarity measures. We define eight desirable properties of a biclustering measure, discuss their importance, and prove which properties each of the reviewed measures has. We show examples drawn and inspired from important studies in which several biclustering measures convey misleading evaluations due to the absence of one or more of the discussed properties. We also advocate the use of a more general comparison approach that is based on the idea of transforming the original problem of comparing biclusterings into an equivalent problem of comparing clustering partitions with overlapping clusters. PMID:26356865

  11. Media independent interface

    NASA Technical Reports Server (NTRS)

    1987-01-01

    The work done on the Media Independent Interface (MII) Interface Control Document (ICD) program is described and recommendations based on it were made. Explanations and rationale for the content of the ICD itself are presented.

  12. Data Machine Independence

    Energy Science and Technology Software Center (ESTSC)

    1994-12-30

    Data-machine independence achieved by using four technologies (ASN.1, XDR, SDS, and ZEBRA) has been evaluated by encoding two different applications in each of the above; and their results compared against the standard programming method using C.

  13. Packing density of rigid aggregates is independent of scale

    PubMed Central

    Zangmeister, Christopher D.; Radney, James G.; Dockery, Lance T.; Young, Jessica T.; Ma, Xiaofei; You, Rian; Zachariah, Michael R.

    2014-01-01

    Large planetary seedlings, comets, microscale pharmaceuticals, and nanoscale soot particles are made from rigid, aggregated subunits that are compacted under low compression into larger structures spanning over 10 orders of magnitude in dimensional space. Here, we demonstrate that the packing density (θf) of compacted rigid aggregates is independent of spatial scale for systems under weak compaction. The θf of rigid aggregated structures across six orders of magnitude were measured using nanoscale spherical soot aerosol composed of aggregates with ∼17-nm monomeric subunits and aggregates made from uniform monomeric 6-mm spherical subunits at the macroscale. We find θf = 0.36 ± 0.02 at both dimensions. These values are remarkably similar to θf observed for comet nuclei and measured values of other rigid aggregated systems across a wide variety of spatial and formative conditions. We present a packing model that incorporates the aggregate morphology and show that θf is independent of both monomer and aggregate size. These observations suggest that the θf of rigid aggregates subject to weak compaction forces is independent of spatial dimension across varied formative conditions. PMID:24927577

  14. Application of the principle of similarity fluid mechanics

    NASA Technical Reports Server (NTRS)

    Hendricks, R. C.; Sengers, J. V.

    1979-01-01

    Possible applications of the principle of similarity to fluid mechanics is described and illustrated. In correlating thermophysical properties of fluids, the similarity principle transcends the traditional corresponding states principle. In fluid mechanics the similarity principle is useful in correlating flow processes that can be modeled adequately with one independent variable (i.e., one-dimensional flows). In this paper we explore the concept of transforming the conservation equations by combining similarity principles for thermophysical properties with those for fluid flow. We illustrate the usefulness of the procedure by applying such a transformation to calculate two phase critical mass flow through a nozzle.

  15. 75 FR 3223 - California Independent System Operator Corporation; Midwest Independent Transmission System...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-20

    .... 719, 73 FR 64,100 (Oct. 28, 2008), FERC Stats & Regs. ] 31,281 (2008); order onreh'g, 74 FR 37,772...; Midwest Independent Transmission System Operator, Inc; . Southwest Power Pool, Inc.; ISO New England, Inc... the responsiveness of regional transmission organizations (RTOs) and independent system...

  16. Independent technical review, handbook

    SciTech Connect

    Not Available

    1994-02-01

    Purpose Provide an independent engineering review of the major projects being funded by the Department of Energy, Office of Environmental Restoration and Waste Management. The independent engineering review will address questions of whether the engineering practice is sufficiently developed to a point where a major project can be executed without significant technical problems. The independent review will focus on questions related to: (1) Adequacy of development of the technical base of understanding; (2) Status of development and availability of technology among the various alternatives; (3) Status and availability of the industrial infrastructure to support project design, equipment fabrication, facility construction, and process and program/project operation; (4) Adequacy of the design effort to provide a sound foundation to support execution of project; (5) Ability of the organization to fully integrate the system, and direct, manage, and control the execution of a complex major project.

  17. Independent NOAA considered

    NASA Astrophysics Data System (ADS)

    Richman, Barbara T.

    A proposal to pull the National Oceanic and Atmospheric Administration (NOAA) out of the Department of Commerce and make it an independent agency was the subject of a recent congressional hearing. Supporters within the science community and in Congress said that an independent NOAA will benefit by being more visible and by not being tied to a cabinet-level department whose main concerns lie elsewhere. The proposal's critics, however, cautioned that making NOAA independent could make it even more vulnerable to the budget axe and would sever the agency's direct access to the President.The separation of NOAA from Commerce was contained in a June 1 proposal by President Ronald Reagan that also called for all federal trade functions under the Department of Commerce to be reorganized into a new Department of International Trade and Industry (DITI).

  18. Homology-Independent Metrics for Comparative Genomics

    PubMed Central

    Coutinho, Tarcisio José Domingos; Franco, Glória Regina; Lobo, Francisco Pereira

    2015-01-01

    A mainstream procedure to analyze the wealth of genomic data available nowadays is the detection of homologous regions shared across genomes, followed by the extraction of biological information from the patterns of conservation and variation observed in such regions. Although of pivotal importance, comparative genomic procedures that rely on homology inference are obviously not applicable if no homologous regions are detectable. This fact excludes a considerable portion of “genomic dark matter” with no significant similarity — and, consequently, no inferred homology to any other known sequence — from several downstream comparative genomic methods. In this review we compile several sequence metrics that do not rely on homology inference and can be used to compare nucleotide sequences and extract biologically meaningful information from them. These metrics comprise several compositional parameters calculated from sequence data alone, such as GC content, dinucleotide odds ratio, and several codon bias metrics. They also share other interesting properties, such as pervasiveness (patterns persist on smaller scales) and phylogenetic signal. We also cite examples where these homology-independent metrics have been successfully applied to support several bioinformatics challenges, such as taxonomic classification of biological sequences without homology inference. They where also used to detect higher-order patterns of interactions in biological systems, ranging from detecting coevolutionary trends between the genomes of viruses and their hosts to characterization of gene pools of entire microbial communities. We argue that, if correctly understood and applied, homology-independent metrics can add important layers of biological information in comparative genomic studies without prior homology inference. PMID:26029354

  19. Counterbalancing for Serial Order Carryover Effects in Experimental Condition Orders

    ERIC Educational Resources Information Center

    Brooks, Joseph L.

    2012-01-01

    Reactions of neural, psychological, and social systems are rarely, if ever, independent of previous inputs and states. The potential for serial order carryover effects from one condition to the next in a sequence of experimental trials makes counterbalancing of condition order an essential part of experimental design. Here, a method is proposed…

  20. Supporting independent inventors

    SciTech Connect

    Bernard, M.J. III; Whalley, P.; Loyola Univ., Chicago, IL . Dept. of Sociology)

    1989-01-01

    Independent inventors contribute products to the marketplace despite the well-financed brain trusts at corporate, university, and federal R and D laboratories. But given the environment in which the basement/garage inventor labors, transferring a worthwhile invention into a commercial product is quite difficult. There is a growing effort by many state and local agencies and organizations to improve the inventor's working environment and begin to routinize the process of developing ideas and inventional of independent inventors into commercial products. 4 refs.

  1. Mechanisms for similarity based cooperation

    NASA Astrophysics Data System (ADS)

    Traulsen, A.

    2008-06-01

    Cooperation based on similarity has been discussed since Richard Dawkins introduced the term “green beard” effect. In these models, individuals cooperate based on an aribtrary signal (or tag) such as the famous green beard. Here, two different models for such tag based cooperation are analysed. As neutral drift is important in both models, a finite population framework is applied. The first model, which we term “cooperative tags” considers a situation in which groups of cooperators are formed by some joint signal. Defectors adopting the signal and exploiting the group can lead to a breakdown of cooperation. In this case, conditions are derived under which the average abundance of the more cooperative strategy exceeds 50%. The second model considers a situation in which individuals start defecting towards others that are not similar to them. This situation is termed “defective tags”. It is shown that in this case, individuals using tags to cooperate exclusively with their own kind dominate over unconditional cooperators.

  2. Similarity and scale in catchment storm response

    NASA Technical Reports Server (NTRS)

    Wood, Eric F.; Sivapalan, Murugesu; Beven, Keith

    1993-01-01

    Until recently, very little progress had been made in understanding the relationship between small-scale variability of topography, soil, and rainfalls and the storm response seen at the catchment scale. The work reviewed here represents the first attempt at a systematic theoretical framework for such understanding in the context of surface runoff generation by different processes. The parameterization of hydrological processes over a range of scales is examined, and the concept of the 'representative elementary area' (REA) is introduced. The REA is a fundamental scale for catchment modeling at which continuum assumptions can be applied for the spatially variable controls and parameters, and spatial patterns no longer have to be considered explicitly. The investigation of scale leads into the concept of hydrologic similarity in which the effects of the environmental controls on runoff generation and flood frequency response be investigated independently of catchment scale. The paper reviews the authors' initial results and hopefully will motivate others to also investigate the issues of hydrologic scale and similarity.

  3. Self-similar solitary waves in Bessel optical lattices

    SciTech Connect

    Xu Siliu; Liang Jianchu; Yi Lin

    2010-01-15

    An analytical solitary wave solution to the generalized nonlinear Schroedinger equation (NLSE) with varying coefficients in Bessel optical lattices is obtained based on the self-similar method. Our results indicate that a new family of Bessel (BSL) self-similar spatial solitons can be formed in the Kerr nonlinear media in the confined cylindrical symmetric geometry in sizes. These soliton profiles are rather stable, independent of propagation distance.

  4. Touchstones of Independence.

    ERIC Educational Resources Information Center

    Roha, Thomas Arden

    1999-01-01

    Foundations affiliated with public higher education institutions can avoid having to open records for public scrutiny, by having independent boards of directors, occupying leased office space or paying market value for university space, using only foundation personnel, retaining legal counsel, being forthcoming with information and use of public…

  5. Independent Human Studies.

    ERIC Educational Resources Information Center

    Kaplan, Suzanne; Wilson, Gordon

    1978-01-01

    The Independent Human Studies program at Schoolcraft College offers an alternative method of earning academic credits. Students delineate an area of study, pose research questions, gather resources, synthesize the information, state the thesis, choose the method of presentation, set schedules, and take responsibility for meeting deadlines. (MB)

  6. Postcard from Independence, Mo.

    ERIC Educational Resources Information Center

    Archer, Jeff

    2004-01-01

    This article reports results showing that the Independence, Missori school district failed to meet almost every one of its improvement goals under the No Child Left Behind Act. The state accreditation system stresses improvement over past scores, while the federal law demands specified amounts of annual progress toward the ultimate goal of 100…

  7. Independence, Disengagement, and Discipline

    ERIC Educational Resources Information Center

    Rubin, Ron

    2012-01-01

    School disengagement is linked to a lack of opportunities for students to fulfill their needs for independence and self-determination. Young people have little say about what, when, where, and how they will learn, the criteria used to assess their success, and the content of school and classroom rules. Traditional behavior management discourages…

  8. Caring about Independent Lives

    ERIC Educational Resources Information Center

    Christensen, Karen

    2010-01-01

    With the rhetoric of independence, new cash for care systems were introduced in many developed welfare states at the end of the 20th century. These systems allow local authorities to pay people who are eligible for community care services directly, to enable them to employ their own careworkers. Despite the obvious importance of the careworker's…

  9. Diversity and similarity of comets

    NASA Technical Reports Server (NTRS)

    Delsemme, A. H.

    1987-01-01

    The evolution of comets from an early stage where they were all similar, to the later diversity is reviewed. The elemental abundances of all pristine comets are likely to be primitive, that is in solar abundance ratios for all elements including C, N, O, S, but with the exception of H (and assumedly He and Ne) that are severely depleted. The solid phase was originally in very fine grains, typically 0.1 micron or less, eventually sintered into larger grain clusters. The volatile phase contains H, C, N, O, and S molecules frozen in the pores of the grain clusters; cosmic ray plus solar irradiation changes the volatile to refractory ratio of the crust. Differences in dust tails, in plasma tails, in photometry between young and old comets, and in the variable carbon depletion of the gas phase seem to be induced by the decay processes.

  10. Semantically enabled image similarity search

    NASA Astrophysics Data System (ADS)

    Casterline, May V.; Emerick, Timothy; Sadeghi, Kolia; Gosse, C. A.; Bartlett, Brent; Casey, Jason

    2015-05-01

    Georeferenced data of various modalities are increasingly available for intelligence and commercial use, however effectively exploiting these sources demands a unified data space capable of capturing the unique contribution of each input. This work presents a suite of software tools for representing geospatial vector data and overhead imagery in a shared high-dimension vector or embedding" space that supports fused learning and similarity search across dissimilar modalities. While the approach is suitable for fusing arbitrary input types, including free text, the present work exploits the obvious but computationally difficult relationship between GIS and overhead imagery. GIS is comprised of temporally-smoothed but information-limited content of a GIS, while overhead imagery provides an information-rich but temporally-limited perspective. This processing framework includes some important extensions of concepts in literature but, more critically, presents a means to accomplish them as a unified framework at scale on commodity cloud architectures.

  11. APoc: large-scale identification of similar protein pockets

    PubMed Central

    Gao, Mu; Skolnick, Jeffrey

    2013-01-01

    Motivation: Most proteins interact with small-molecule ligands such as metabolites or drug compounds. Over the past several decades, many of these interactions have been captured in high-resolution atomic structures. From a geometric point of view, most interaction sites for grasping these small-molecule ligands, as revealed in these structures, form concave shapes, or ‘pockets’, on the protein’s surface. An efficient method for comparing these pockets could greatly assist the classification of ligand-binding sites, prediction of protein molecular function and design of novel drug compounds. Results: We introduce a computational method, APoc (Alignment of Pockets), for the large-scale, sequence order-independent, structural comparison of protein pockets. A scoring function, the Pocket Similarity Score (PS-score), is derived to measure the level of similarity between pockets. Statistical models are used to estimate the significance of the PS-score based on millions of comparisons of randomly related pockets. APoc is a general robust method that may be applied to pockets identified by various approaches, such as ligand-binding sites as observed in experimental complex structures, or predicted pockets identified by a pocket-detection method. Finally, we curate large benchmark datasets to evaluate the performance of APoc and present interesting examples to demonstrate the usefulness of the method. We also demonstrate that APoc has better performance than the geometric hashing-based method SiteEngine. Availability and implementation: The APoc software package including the source code is freely available at http://cssb.biology.gatech.edu/APoc. Contact: skolnick@gatech.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:23335017

  12. A Student Guide for Independent Study Telecourses.

    ERIC Educational Resources Information Center

    Chavez, Mauro

    Designed for students enrolled in telecourses offered by Evergreen Valley College (EVC) on an independent study basis, this guide explains the role of telecourses in the college curriculum, differences and similarities between telecourses and traditional courses, procedures for contacting instructors, and the roles of the college and the student…

  13. Similarity Rules for Scaling Solar Sail Systems

    NASA Technical Reports Server (NTRS)

    Canfield, Stephen L.; Beard, James W., III; Peddieson, John; Ewing, Anthony; Garbe, Greg

    2004-01-01

    Future science missions will require solar sails on the order 10,000 sq m (or larger). However, ground and flight demonstrations must be conducted at significantly smaller Sizes (400 sq m for ground demo) due to limitations of ground-based facilities and cost and availability of flight opportunities. For this reason, the ability to understand the process of scalability, as it applies to solar sail system models and test data, is crucial to the advancement of this technology. This report will address issues of scaling in solar sail systems, focusing on structural characteristics, by developing a set of similarity or similitude functions that will guide the scaling process. The primary goal of these similarity functions (process invariants) that collectively form a set of scaling rules or guidelines is to establish valid relationships between models and experiments that are performed at different orders of scale. In the near term, such an effort will help guide the size and properties of a flight validation sail that will need to be flown to accurately represent a large, mission-level sail.

  14. Critical Branches and Lucky Loads in Control-Independence Architectures

    ERIC Educational Resources Information Center

    Malik, Kshitiz

    2009-01-01

    Branch mispredicts have a first-order impact on the performance of integer applications. Control Independence (CI) architectures aim to overlap the penalties of mispredicted branches with useful execution by spawning control-independent work as separate threads. Although control independent, such threads may consume register and memory values…

  15. The independent medical examination.

    PubMed

    Ameis, Arthur; Zasler, Nathan D

    2002-05-01

    The physiatrist, owing to expertise in impairment and disability analysis, is able to offer the medicolegal process considerable assistance. This chapter describes the scope and process of the independent medical examination (IME) and provides an overview of its component parts. Practical guidelines are provided for performing a physiatric IME of professional standard, and for serving as an impartial, expert witness. Caveats are described regarding testifying and medicolegal ethical issues along with practice management advice. PMID:12122847

  16. Hierarchical similarity transformations between Gaussian mixtures.

    PubMed

    Rigas, George; Nikou, Christophoros; Goletsis, Yorgos; Fotiadis, Dimitrios I

    2013-11-01

    In this paper, we propose a method to estimate the density of a data space represented by a geometric transformation of an initial Gaussian mixture model. The geometric transformation is hierarchical, and it is decomposed into two steps. At first, the initial model is assumed to undergo a global similarity transformation modeled by translation, rotation, and scaling of the model components. Then, to increase the degrees of freedom of the model and allow it to capture fine data structures, each individual mixture component may be transformed by another, local similarity transformation, whose parameters are distinct for each component of the mixture. In addition, to constrain the order of magnitude of the local transformation (LT) with respect to the global transformation (GT), zero-mean Gaussian priors are imposed onto the local parameters. The estimation of both GT and LT parameters is obtained through the expectation maximization framework. Experiments on artificial data are conducted to evaluate the proposed model, with varying data dimensionality, number of model components, and transformation parameters. In addition, the method is evaluated using real data from a speech recognition task. The obtained results show a high model accuracy and demonstrate the potential application of the proposed method to similar classification problems. PMID:24808615

  17. Agent independent task planning

    NASA Technical Reports Server (NTRS)

    Davis, William S.

    1990-01-01

    Agent-Independent Planning is a technique that allows the construction of activity plans without regard to the agent that will perform them. Once generated, a plan is then validated and translated into instructions for a particular agent, whether a robot, crewmember, or software-based control system. Because Space Station Freedom (SSF) is planned for orbital operations for approximately thirty years, it will almost certainly experience numerous enhancements and upgrades, including upgrades in robotic manipulators. Agent-Independent Planning provides the capability to construct plans for SSF operations, independent of specific robotic systems, by combining techniques of object oriented modeling, nonlinear planning and temporal logic. Since a plan is validated using the physical and functional models of a particular agent, new robotic systems can be developed and integrated with existing operations in a robust manner. This technique also provides the capability to generate plans for crewmembers with varying skill levels, and later apply these same plans to more sophisticated robotic manipulators made available by evolutions in technology.

  18. FRESCO: Referential compression of highly similar sequences.

    PubMed

    Wandelt, Sebastian; Leser, Ulf

    2013-01-01

    In many applications, sets of similar texts or sequences are of high importance. Prominent examples are revision histories of documents or genomic sequences. Modern high-throughput sequencing technologies are able to generate DNA sequences at an ever-increasing rate. In parallel to the decreasing experimental time and cost necessary to produce DNA sequences, computational requirements for analysis and storage of the sequences are steeply increasing. Compression is a key technology to deal with this challenge. Recently, referential compression schemes, storing only the differences between a to-be-compressed input and a known reference sequence, gained a lot of interest in this field. In this paper, we propose a general open-source framework to compress large amounts of biological sequence data called Framework for REferential Sequence COmpression (FRESCO). Our basic compression algorithm is shown to be one to two orders of magnitudes faster than comparable related work, while achieving similar compression ratios. We also propose several techniques to further increase compression ratios, while still retaining the advantage in speed: 1) selecting a good reference sequence; and 2) rewriting a reference sequence to allow for better compression. In addition,we propose a new way of further boosting the compression ratios by applying referential compression to already referentially compressed files (second-order compression). This technique allows for compression ratios way beyond state of the art, for instance,4,000:1 and higher for human genomes. We evaluate our algorithms on a large data set from three different species (more than 1,000 genomes, more than 3 TB) and on a collection of versions of Wikipedia pages. Our results show that real-time compression of highly similar sequences at high compression ratios is possible on modern hardware. PMID:24524158

  19. Independence among People with Disabilities: II. Personal Independence Profile.

    ERIC Educational Resources Information Center

    Nosek, Margaret A.; And Others

    1992-01-01

    Developed Personal Independence Profile (PIP) as an instrument to measure aspects of independence beyond physical and cognitive functioning in people with diverse disabilities. PIP was tested for reliability and validity with 185 subjects from 10 independent living centers. Findings suggest that the Personal Independence Profile measures the…

  20. Explosion Source Similarity Analysis via SVD

    NASA Astrophysics Data System (ADS)

    Yedlin, Matthew; Ben Horin, Yochai; Margrave, Gary

    2016-04-01

    An important seismological ingredient for establishing a regional seismic nuclear discriminant is the similarity analysis of a sequence of explosion sources. To investigate source similarity, we are fortunate to have access to a sequence of 1805 three-component recordings of quarry blasts, shot from March 2002 to January 2015. The centroid of these blasts has an estimated location 36.3E and 29.9N. All blasts were detonated by JPMC (Jordan Phosphate Mines Co.) All data were recorded at the Israeli NDC, HFRI, located at 30.03N and 35.03E. Data were first winnowed based on the distribution of maximum amplitudes in the neighborhood of the P-wave arrival. The winnowed data were then detrended using the algorithm of Cleveland et al (1990). The detrended data were bandpass filtered between .1 to 12 Hz using an eighth order Butterworth filter. Finally, data were sorted based on maximum trace amplitude. Two similarity analysis approaches were used. First, for each component, the entire suite of traces was decomposed into its eigenvector representation, by employing singular-valued decomposition (SVD). The data were then reconstructed using 10 percent of the singular values, with the resulting enhancement of the S-wave and surface wave arrivals. The results of this first method are then compared to the second analysis method based on the eigenface decomposition analysis of Turk and Pentland (1991). While both methods yield similar results in enhancement of data arrivals and reduction of data redundancy, more analysis is required to calibrate the recorded data to charge size, a quantity that was not available for the current study. References Cleveland, R. B., Cleveland, W. S., McRae, J. E., and Terpenning, I., Stl: A seasonal-trend decomposition procedure based on loess, Journal of Official Statistics, 6, No. 1, 3-73, 1990. Turk, M. and Pentland, A., Eigenfaces for recognition. Journal of cognitive neuroscience, 3(1), 71-86, 1991.

  1. The Defensins Consist of Two Independent, Convergent Protein Superfamilies.

    PubMed

    Shafee, Thomas M A; Lay, Fung T; Hulett, Mark D; Anderson, Marilyn A

    2016-09-01

    The defensin and defensin-like proteins are an extensive group of small, cationic, disulfide-rich proteins found in animals, plants, and fungi and mostly perform roles in host defense. The term defensin was originally used for small mammalian proteins found in neutrophils and was subsequently applied to insect proteins and plant γ-thionins based on their perceived sequence and structural similarity. Defensins are often described as ancient innate immunity molecules and classified as a single superfamily and both sequence alignments and phylogenies have been constructed. Here, we present evidence that the defensins have not all evolved from a single ancestor. Instead, they consist of two analogous superfamilies, and extensive convergent evolution is the source of their similarities. Evidence of common origin necessarily gets weaker for distantly related genes, as is the case for defensins, which are both divergent and small. We show that similarities that have been used as evidence for common origin are all expected by chance in short, constrained, disulfide-rich proteins. Differences in tertiary structure, secondary structure order, and disulfide bond connectivity indicate convergence as the likely source of the similarity. We refer to the two evolutionarily independent groups as the cis-defensins and trans-defensins based on the orientation of the most conserved pair of disulfides. PMID:27297472

  2. Employee vs independent contractor.

    PubMed

    Kolender, Ellen

    2012-01-01

    Finding qualified personnel for the cancer registry department has become increasingly difficult, as experienced abstractors retire and cancer diagnoses increase. Faced with hiring challenges, managers turn to teleworkers to fill positions and accomplish work in a timely manner. Suddenly, the hospital hires new legal staff and all telework agreements are disrupted. The question arises: Are teleworkers employees or independent contractors? Creating telework positions requires approval from the legal department and human resources. Caught off-guard in the last quarter of the year, I found myself again faced with hiring challenges. PMID:23599033

  3. An independent hydrogen source

    SciTech Connect

    Kobzenko, G.F.; Chubenko, M.V.; Kobzenko, N.S.; Senkevich, A.I.; Shkola, A.A.

    1985-10-01

    Descriptions are given of the design and operation of an independent hydrogen source used in purifying and storing hydrogen. If LaNi/sub 5/ or TiFe is used as the sorbent, one can store about 500 liter of chemically bound hydrogen in a vessel of 0.9 liter. Molecular purification of the desorbed hydrogen is used. The IHS is a safe hydrogen source, since the hydrogen is trapped in the sorbent in the chemically bound state and in equilibrium with LaNi/sub 5/Hx at room temperature. If necessary, the IHS can serve as a compressor and provide higher hydrogen pressures. The device is compact and transportable.

  4. Here's looking at you: Visual similarity exacerbates the Moses illusion for semantically similar celebrities.

    PubMed

    Davis, Danielle K; Abrams, Lise

    2016-01-01

    When people read questions like "How many animals of each kind did Moses take on the ark?", many mistakenly answer "2" despite knowing that Noah sailed the ark. This "Moses illusion" occurs when names share semantic features. Two experiments examined whether shared visual concepts (facial features) exacerbate Moses illusions for celebrity names. Questions contained an unrelated distractor name or a semantic distractor name that was visually similar or dissimilar to the correct target name. Both experiments revealed more Moses illusions occurred for questions containing a visually similar semantic distractor compared with either visually dissimilar or unrelated distractors. Furthermore, presenting a picture of the target (Experiment 1) or the visually similar distractor (Experiment 2) before the question increased accurate detection of the illusion, independent of distractor type. Results challenge theoretical explanations of the Moses illusion as resulting from purely shallow semantic processing and demonstrate the importance of visual information in processing proper names, even when presented in written form. (PsycINFO Database Record PMID:26147668

  5. Cary Potter on Independent Education

    ERIC Educational Resources Information Center

    Potter, Cary

    1978-01-01

    Cary Potter was President of the National Association of Independent Schools from 1964-1978. As he leaves NAIS he gives his views on education, on independence, on the independent school, on public responsibility, on choice in a free society, on educational change, and on the need for collective action by independent schools. (Author/RK)

  6. Myth or Truth: Independence Day.

    ERIC Educational Resources Information Center

    Gardner, Traci

    Most Americans think of the Fourth of July as Independence Day, but is it really the day the U.S. declared and celebrated independence? By exploring myths and truths surrounding Independence Day, this lesson asks students to think critically about commonly believed stories regarding the beginning of the Revolutionary War and the Independence Day…

  7. Similarity-based cooperation and spatial segregation

    NASA Astrophysics Data System (ADS)

    Traulsen, Arne; Claussen, Jens Christian

    2004-10-01

    We analyze a cooperative game, where the cooperative act is not based on the previous behavior of the coplayer, but on the similarity between the players. This system has been studied in a mean-field description recently [A. Traulsen and H. G. Schuster, Phys. Rev. E 68, 046129 (2003)]. Here, the spatial extension to a two-dimensional lattice is studied, where each player interacts with eight players in a Moore neighborhood. The system shows a strong segregation independent of parameters. The introduction of a local conversion mechanism towards tolerance allows for four-state cycles and the emergence of spiral waves in the spatial game. In the case of asymmetric costs of cooperation a rich variety of complex behavior is observed depending on both cooperation costs. Finally, we study the stabilization of a cooperative fixed point of a forecast rule in the symmetric game, which corresponds to cooperation across segregation borders. This fixed point becomes unstable for high cooperation costs, but can be stabilized by a linear feedback mechanism.

  8. Independent task Fourier filters

    NASA Astrophysics Data System (ADS)

    Caulfield, H. John

    2001-11-01

    Since the early 1960s, a major part of optical computing systems has been Fourier pattern recognition, which takes advantage of high speed filter changes to enable powerful nonlinear discrimination in `real time.' Because filter has a task quite independent of the tasks of the other filters, they can be applied and evaluated in parallel or, in a simple approach I describe, in sequence very rapidly. Thus I use the name ITFF (independent task Fourier filter). These filters can also break very complex discrimination tasks into easily handled parts, so the wonderful space invariance properties of Fourier filtering need not be sacrificed to achieve high discrimination and good generalizability even for ultracomplex discrimination problems. The training procedure proceeds sequentially, as the task for a given filter is defined a posteriori by declaring it to be the discrimination of particular members of set A from all members of set B with sufficient margin. That is, we set the threshold to achieve the desired margin and note the A members discriminated by that threshold. Discriminating those A members from all members of B becomes the task of that filter. Those A members are then removed from the set A, so no other filter will be asked to perform that already accomplished task.

  9. Social values as arguments: similar is convincing

    PubMed Central

    Maio, Gregory R.; Hahn, Ulrike; Frost, John-Mark; Kuppens, Toon; Rehman, Nadia; Kamble, Shanmukh

    2014-01-01

    Politicians, philosophers, and rhetors engage in co-value argumentation: appealing to one value in order to support another value (e.g., “equality leads to freedom”). Across four experiments in the United Kingdom and India, we found that the psychological relatedness of values affects the persuasiveness of the arguments that bind them. Experiment 1 found that participants were more persuaded by arguments citing values that fulfilled similar motives than by arguments citing opposing values. Experiments 2 and 3 replicated this result using a wider variety of values, while finding that the effect is stronger among people higher in need for cognition and that the effect is mediated by the greater plausibility of co-value arguments that link motivationally compatible values. Experiment 4 extended the effect to real-world arguments taken from political propaganda and replicated the mediating effect of argument plausibility. The findings highlight the importance of value relatedness in argument persuasiveness. PMID:25147529

  10. Social values as arguments: similar is convincing.

    PubMed

    Maio, Gregory R; Hahn, Ulrike; Frost, John-Mark; Kuppens, Toon; Rehman, Nadia; Kamble, Shanmukh

    2014-01-01

    Politicians, philosophers, and rhetors engage in co-value argumentation: appealing to one value in order to support another value (e.g., "equality leads to freedom"). Across four experiments in the United Kingdom and India, we found that the psychological relatedness of values affects the persuasiveness of the arguments that bind them. Experiment 1 found that participants were more persuaded by arguments citing values that fulfilled similar motives than by arguments citing opposing values. Experiments 2 and 3 replicated this result using a wider variety of values, while finding that the effect is stronger among people higher in need for cognition and that the effect is mediated by the greater plausibility of co-value arguments that link motivationally compatible values. Experiment 4 extended the effect to real-world arguments taken from political propaganda and replicated the mediating effect of argument plausibility. The findings highlight the importance of value relatedness in argument persuasiveness. PMID:25147529

  11. Effect of Number and Similarity on Children's Plural Comprehension

    ERIC Educational Resources Information Center

    Lanter, Jennifer A.; Basche, Richard A.

    2014-01-01

    During the first years of language development, toddlers coordinate multiple cues in order to acquire the plural form. The aim of this study was to manipulate object similarity as well as set size in order to determine whether these variables impact children's comprehension of plurality. One-hundred-and-fifty children ranging in age from 22 to 36…

  12. Pharmacophore-Based Similarity Scoring for DOCK

    PubMed Central

    2015-01-01

    Pharmacophore modeling incorporates geometric and chemical features of known inhibitors and/or targeted binding sites to rationally identify and design new drug leads. In this study, we have encoded a three-dimensional pharmacophore matching similarity (FMS) scoring function into the structure-based design program DOCK. Validation and characterization of the method are presented through pose reproduction, crossdocking, and enrichment studies. When used alone, FMS scoring dramatically improves pose reproduction success to 93.5% (∼20% increase) and reduces sampling failures to 3.7% (∼6% drop) compared to the standard energy score (SGE) across 1043 protein–ligand complexes. The combined FMS+SGE function further improves success to 98.3%. Crossdocking experiments using FMS and FMS+SGE scoring, for six diverse protein families, similarly showed improvements in success, provided proper pharmacophore references are employed. For enrichment, incorporating pharmacophores during sampling and scoring, in most cases, also yield improved outcomes when docking and rank-ordering libraries of known actives and decoys to 15 systems. Retrospective analyses of virtual screenings to three clinical drug targets (EGFR, IGF-1R, and HIVgp41) using X-ray structures of known inhibitors as pharmacophore references are also reported, including a customized FMS scoring protocol to bias on selected regions in the reference. Overall, the results and fundamental insights gained from this study should benefit the docking community in general, particularly researchers using the new FMS method to guide computational drug discovery with DOCK. PMID:25229837

  13. Similarity Rules for Scaling Solar Sail Systems

    NASA Technical Reports Server (NTRS)

    Canfield, Stephen L.; Peddieson, John; Garbe, Gregory

    2010-01-01

    Future science missions will require solar sails on the order of 200 square meters (or larger). However, ground demonstrations and flight demonstrations must be conducted at significantly smaller sizes, due to limitations of ground-based facilities and cost and availability of flight opportunities. For this reason, the ability to understand the process of scalability, as it applies to solar sail system models and test data, is crucial to the advancement of this technology. This paper will approach the problem of scaling in solar sail models by developing a set of scaling laws or similarity criteria that will provide constraints in the sail design process. These scaling laws establish functional relationships between design parameters of a prototype and model sail that are created at different geometric sizes. This work is applied to a specific solar sail configuration and results in three (four) similarity criteria for static (dynamic) sail models. Further, it is demonstrated that even in the context of unique sail material requirements and gravitational load of earth-bound experiments, it is possible to develop appropriate scaled sail experiments. In the longer term, these scaling laws can be used in the design of scaled experimental tests for solar sails and in analyzing the results from such tests.

  14. Mass versus molar doses, similarities and differences.

    PubMed

    Chmielewska, A; Lamparczyk, H

    2008-11-01

    Generally, they are two systems expressing the amounts of active substance in a given drug product, i.e. mass and molar dose. Currently, the dose system based on the mass is widely used in which doses are expressed in grams or milligrams. On the other hand, the molar dose system is in direct relation to the number of molecules. Hence, the objective of this work was to compare both systems in order to find their advantages and disadvantages. Active substances belonging to the groups of antibiotics, nootropic agents, beta-blockers, vitamins, GABA-analog, COX-2 inhibitors, calcium channel antagonists, benzodiazepine receptor agonists, lipid-modifying agents (fibrates), non-steroidal anti-inflammatory drugs (profens), estrogens, neuroleptics, analgesics and benzodiazepines were considered. Moreover, products containing two active substances were also taken into account. These are mixtures of hydrochlorothiazide with active substances influencing the renin-angiotensin system and combined oral contraceptives. For each active substance, belonging to the groups mentioned above molar doses were calculated from mass doses and molar mass. Hence, groups of drugs with a single active substance, drugs with similar pharmacological activities, pharmaceutical alternatives, and drugs with a single active ingredient manufactured in different doses were compared in order to find which dose system describes more adequately differences between and within the groups mentioned above. Comparisons were supported by a number of equations, which theoretically justify the data, and relationships derived from calculations. PMID:19069248

  15. Dependency Similarity, Attraction and Perceived Happiness.

    ERIC Educational Resources Information Center

    Pandey, Janak

    1978-01-01

    Subjects were asked to evaluate either a similar personality or a dissimilar personality. Subjects rated similar others more positively than dissimilar others and, additionally, perceived similar others as more helpful and sympathetic than dissimilar others. (Author)

  16. Similarity Grouping and Repetition Blindness are Both Influenced by Attention

    PubMed Central

    de Haan, Bianca; Rorden, Chris

    2009-01-01

    Previous studies have reported seemingly conflicting results regarding how the amount of stimulus similarity between two simultaneously presented target stimuli impacts perceptual performance. There are many reports of ‘repetition blindness’, where individuals do worse when shown two similar stimuli relative to two different stimuli. On the other hand, there are reports of ‘similarity grouping’, where participants perform better when identifying two similar objects relative to two different objects. This manuscript posits that repetition blindness and similarity grouping coexist and can be elicited in the same subjects in a single task. This not only explains the previous opposite effects of stimulus similarity on task performance, but also provides a unique opportunity to directly compare these opposite effects of stimulus similarity with respect to susceptibility to a modulating factor. Since previous studies have provided inconclusive results on whether attentional relevance can modulate the effect of stimulus similarity on task performance, the current manuscript aims to compare repetition blindness and similarity grouping with respect to their susceptibility to attentional relevance. The results of the first experiment confirmed that both repetition blindness and similarity grouping can be elicited in the same experiment, suggesting that repetition blindness and similarity grouping coexist. The results of the second experiment suggest that both repetition blindness and similarity grouping can be modulated by attentional relevance. These results support the explanation of repetition blindness as a token individuation failure. Furthermore, these results suggest that supposedly pre-attentional grouping mechanisms might not operate as independently from top-down attentional modulations as traditionally thought. PMID:20300466

  17. Modulating the phonological similarity effect: the contribution of interlist similarity and lexicality.

    PubMed

    Karlsen, Paul Johan; Lian, Arild

    2005-04-01

    The classical phonological similarity effect (PSE) was studied with words and nonwords in two immediate serial recall (ISR) tasks. The relative contributions of intralist and interlist interference were compared, and differential effects on item and order memory were observed. PSE occurred with words and was reversed with nonwords. In addition, PSE was modulated by interlist similarity, which enhanced recall of rhyme items and impaired recall of distinct items. Finally, interlist similarity reduced item recall of words, whereas it improved serial recall of nonwords. The latter finding rules out the hypothesis that the reverse PSE for nonwords is due to interlist interference. It is concluded that two opposing effects of phonological intralist similarity cause the interaction between PSE and lexicality in ISR. With words, the positive effect on item recall is usually masked by a much more disruptive effect on position accuracy. With nonwords, however, the positive effect often masks the negative one. These findings are discussed in relation to current models of verbal short-term memory. PMID:16156188

  18. Parallel changes in the taxonomical structure of bacterial communities exposed to a similar environmental disturbance

    PubMed Central

    Laplante, Karine; Derome, Nicolas

    2011-01-01

    Bacterial communities play a central role in ecosystems, by regulating biogeochemical fluxes. Therefore, understanding how multiple functional interactions between species face environmental perturbations is a major concern in conservation biology. Because bacteria can use several strategies, including horizontal gene transfers (HGT), to cope with rapidly changing environmental conditions, potential decoupling between function and taxonomy makes the use of a given species as a general bioindicator problematic. The present work is a first step to characterize the impact of a recent polymetallic gradient over the taxonomical networks of five lacustrine bacterial communities. Given that evolutionary convergence represents one of the best illustration of natural selection, we focused on a system composed of two pairs of impacted and clean lakes in order to test whether similar perturbation exerts a comparable impact on the taxonomical networks of independent bacterial communities. First, we showed that similar environmental stress drove parallel structural changes at the taxonomic level on two independent bacterial communities. Second, we showed that a long-term exposure to contaminant gradients drove significant taxonomic structure changes within three interconnected bacterial communities. Thus, this model lake system is relevant to characterize the strategies, namely acclimation and/or adaptation, of bacterial communities facing environmental perturbations, such as metal contamination. PMID:22393517

  19. Suffix Ordering and Morphological Processing

    ERIC Educational Resources Information Center

    Plag, Ingo; Baayen, Harald

    2009-01-01

    There is a long-standing debate about the principles constraining the combinatorial properties of suffixes. Hay 2002 and Hay & Plag 2004 proposed a model in which suffixes can be ordered along a hierarchy of processing complexity. We show that this model generalizes to a larger set of suffixes, and we provide independent evidence supporting the…

  20. 38 CFR 21.4267 - Approval of independent study.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... similar courses. (Authority: 38 U.S.C. 3014, 3523, 3672, 3676(e), 3680A(a)) (b) Definition of independent..., conventional classroom or laboratory sessions; and (iii) It is not a course listed in paragraph (c), (d), or (e... scheduled class sessions. (Authority: 38 U.S.C. 3523, 3676(e), 3680A(a)) (c) Scope of independent study....

  1. 23. Historic American Buildings Survey. 'Fort Independence,' 1801, by John ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    23. Historic American Buildings Survey. 'Fort Independence,' 1801, by John Foncin. French artillerist and military engineer and designer of Fort McHenry. This plan includes alternate arrangements for grouping of the inner buildings 'Fig. 2' being similar to Fort McHenry. - Fort McHenry National Monument & Historic Shrine, East Fort Avenue at Whetstone Point, Baltimore, Independent City, MD

  2. Achievement Patterns of Students in an Elite, Male Independent School

    ERIC Educational Resources Information Center

    Trusty, Edward Maurice, Jr.

    2009-01-01

    There is an underlying assumption that regardless of student ethnicity, socio-economic status, or any other variable, elite, independent schools by mission and design are effective at producing successful students. This would cause some to conclude that all students enrolled in elite, independent schools perform similarly on all academic measures.…

  3. Studying the Independent School Library

    ERIC Educational Resources Information Center

    Cahoy, Ellysa Stern; Williamson, Susan G.

    2008-01-01

    In 2005, the American Association of School Librarians' Independent Schools Section conducted a national survey of independent school libraries. This article analyzes the results of the survey, reporting specialized data and information regarding independent school library budgets, collections, services, facilities, and staffing. Additionally, the…

  4. V{sub 2}Cu{sub 3}Ga{sub 8}, Mo{sub 2}Cu{sub 3}Ga{sub 8} and W{sub 2}Cu{sub 3}Ga{sub 8}-New compounds with a novel order variant of a bcc packing and motifs of self-similarity

    SciTech Connect

    Kuntze, Verena; Lux, Rainer; Hillebrecht, Harald

    2007-01-15

    Single crystals of the new compounds TM{sub 2}Cu{sub 3}Ga{sub 8} (TM=V, Mo, W) were synthesised from the elements. Structure determinations of the isotypic compounds (cI104, space group I4-bar 3d, Z=8; Mo{sub 2}Cu{sub 3}Ga{sub 8}: a=11.9171(10)A, 613 refl., 23 param., R{sub 1}(F)=0.022, wR{sub 2}(F{sup 2})=0.047; W{sub 2}Cu{sub 3}Ga{sub 8}: 11.9248(8)A, 346 refl., 23 param., R{sub 1}(F)=0.048, wR{sub 2}(F{sup 2})=0.086; V{sub 2}Cu{sub 3}Ga{sub 8}: 11.7861(14)A, 374 refl., 24 param., R{sub 1}(F)=0.033, wR{sub 2}(F{sup 2})=0.081) showed a new cubic structure type which can be classified as an ordered defect variant of a bcc packing with a{sup '}=4a: [(TM){sub 2}(Cu){sub 3}({open_square}){sub 3}][Ga{sub 8}]. The coordination polyhedra of the transition metals consist of Ga{sub 8}-cubes with 3 sides capped by Cu leading to coordination number 11. The arrangement of the TMGa{sub 8}Cu{sub 3}-polyhedra is in a way they form itself a 3-fold capped cube. All compositions were confirmed by EDX measurements.

  5. The integrity of independent variables in behavior analysis.

    PubMed Central

    Peterson, L; Homer, A L; Wonderlich, S A

    1982-01-01

    Establishing a functional relationship between the independent and the dependent variable is the primary focus of applied behavior analysis. Accurate and reliable description and observation of both the independent and dependent variables are necessary to achieve this goal. Although considerable attention has been focused on ensuring the integrity of the dependent variable in the operant literature, similar effort has not been directed at ensuring the integrity of the independent variable. Inaccurate descriptions of the application of the independent variable may threaten the reliability and validity of operant research data. A survey of articles in the Journal of Applied Behavior Analysis demonstrated that the majority of articles published do not use any assessment of the actual occurrence of the independent variable and a sizable minority do not provide operational definitions of the independent variable. The feasibility and utility of ensuring the integrity of the independent variable is described. PMID:7153187

  6. Measurement-device-independent quantum key distribution.

    PubMed

    Lo, Hoi-Kwong; Curty, Marcos; Qi, Bing

    2012-03-30

    How to remove detector side channel attacks has been a notoriously hard problem in quantum cryptography. Here, we propose a simple solution to this problem--measurement-device-independent quantum key distribution (QKD). It not only removes all detector side channels, but also doubles the secure distance with conventional lasers. Our proposal can be implemented with standard optical components with low detection efficiency and highly lossy channels. In contrast to the previous solution of full device independent QKD, the realization of our idea does not require detectors of near unity detection efficiency in combination with a qubit amplifier (based on teleportation) or a quantum nondemolition measurement of the number of photons in a pulse. Furthermore, its key generation rate is many orders of magnitude higher than that based on full device independent QKD. The results show that long-distance quantum cryptography over say 200 km will remain secure even with seriously flawed detectors. PMID:22540686

  7. Visual similarity effects in categorical search.

    PubMed

    Alexander, Robert G; Zelinsky, Gregory J

    2011-01-01

    We asked how visual similarity relationships affect search guidance to categorically defined targets (no visual preview). Experiment 1 used a web-based task to collect visual similarity rankings between two target categories, teddy bears and butterflies, and random-category objects, from which we created search displays in Experiment 2 having either high-similarity distractors, low-similarity distractors, or "mixed" displays with high-, medium-, and low-similarity distractors. Analysis of target-absent trials revealed faster manual responses and fewer fixated distractors on low-similarity displays compared to high-similarity displays. On mixed displays, first fixations were more frequent on high-similarity distractors (bear = 49%; butterfly = 58%) than on low-similarity distractors (bear = 9%; butterfly = 12%). Experiment 3 used the same high/low/mixed conditions, but now these conditions were created using similarity estimates from a computer vision model that ranked objects in terms of color, texture, and shape similarity. The same patterns were found, suggesting that categorical search can indeed be guided by purely visual similarity. Experiment 4 compared cases where the model and human rankings differed and when they agreed. We found that similarity effects were best predicted by cases where the two sets of rankings agreed, suggesting that both human visual similarity rankings and the computer vision model captured features important for guiding search to categorical targets. PMID:21757505

  8. String order via Floquet interactions in atomic systems

    NASA Astrophysics Data System (ADS)

    Lee, Tony E.; Joglekar, Yogesh N.; Richerme, Philip

    2016-08-01

    We study the transverse-field Ising model with interactions that are modulated in time. In a rotating frame, the system is described by a time-independent Hamiltonian with many-body interactions, similar to the cluster Hamiltonians of measurement-based quantum computing. In one dimension, there is a three-body interaction, which leads to string order instead of conventional magnetic order. We show that the string order is robust to power-law interactions that decay with the cube of distance. In two and three dimensions, there are five- and seven-body interactions. We discuss adiabatic preparation of the ground state as well as experimental implementation with trapped ions, Rydberg atoms, and polar molecules.

  9. DDE Transposases: Structural Similarity and Diversity

    PubMed Central

    Nesmelova, Irina V.; Hackett, Perry B.

    2010-01-01

    DNA transposons are mobile DNA elements that can move from one DNA molecule to another and thereby deliver genetic information into human chromosomes in order to confer a new function or replace a defective gene. This process requires a transposase enzyme. During transposition DD[E/D]-transposases undergo a series of conformational changes. We summarize the structural features of DD[E/D]-transposases for which three-dimensional structures are available and that relate to transposases, which are being developed for use in mammalian cells. Similar to other members of the polynucleotidyl transferase family, the catalytic domains of DD[E/D]-transposases share a common feature: an RNase H-like fold that draws three catalytically active residues, the DDE motif, into close proximity. Beyond this fold, the structures of catalytic domains vary considerably, and the DD[E/D]-transposases display marked structural diversity within their DNA-binding domains. Yet despite such structural variability, essentially the same end result is achieved. PMID:20615441

  10. Reconstructing propagation networks with temporal similarity.

    PubMed

    Liao, Hao; Zeng, An

    2015-01-01

    Node similarity significantly contributes to the growth of real networks. In this paper, based on the observed epidemic spreading results we apply the node similarity metrics to reconstruct the underlying networks hosting the propagation. We find that the reconstruction accuracy of the similarity metrics is strongly influenced by the infection rate of the spreading process. Moreover, there is a range of infection rate in which the reconstruction accuracy of some similarity metrics drops nearly to zero. To improve the similarity-based reconstruction method, we propose a temporal similarity metric which takes into account the time information of the spreading. The reconstruction results are remarkably improved with the new method. PMID:26086198

  11. Reconstructing propagation networks with temporal similarity

    PubMed Central

    Liao, Hao; Zeng, An

    2015-01-01

    Node similarity significantly contributes to the growth of real networks. In this paper, based on the observed epidemic spreading results we apply the node similarity metrics to reconstruct the underlying networks hosting the propagation. We find that the reconstruction accuracy of the similarity metrics is strongly influenced by the infection rate of the spreading process. Moreover, there is a range of infection rate in which the reconstruction accuracy of some similarity metrics drops nearly to zero. To improve the similarity-based reconstruction method, we propose a temporal similarity metric which takes into account the time information of the spreading. The reconstruction results are remarkably improved with the new method. PMID:26086198

  12. Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

    PubMed Central

    Chen, Xing; Clarence Yan, Chenggang; Luo, Cai; Ji, Wen; Zhang, Yongdong; Dai, Qionghai

    2015-01-01

    Increasing evidence has indicated that plenty of lncRNAs play important roles in many critical biological processes. Developing powerful computational models to construct lncRNA functional similarity network based on heterogeneous biological datasets is one of the most important and popular topics in the fields of both lncRNAs and complex diseases. Functional similarity network consturction could benefit the model development for both lncRNA function inference and lncRNA-disease association identification. However, little effort has been attempted to analysis and calculate lncRNA functional similarity on a large scale. In this study, based on the assumption that functionally similar lncRNAs tend to be associated with similar diseases, we developed two novel lncRNA functional similarity calculation models (LNCSIM). LNCSIM was evaluated by introducing similarity scores into the model of Laplacian Regularized Least Squares for LncRNA–Disease Association (LRLSLDA) for lncRNA-disease association prediction. As a result, new predictive models improved the performance of LRLSLDA in the leave-one-out cross validation of various known lncRNA-disease associations datasets. Furthermore, some of the predictive results for colorectal cancer and lung cancer were verified by independent biological experimental studies. It is anticipated that LNCSIM could be a useful and important biological tool for human disease diagnosis, treatment, and prevention. PMID:26061969

  13. Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity.

    PubMed

    Chen, Xing; Yan, Chenggang Clarence; Luo, Cai; Ji, Wen; Zhang, Yongdong; Dai, Qionghai

    2015-01-01

    Increasing evidence has indicated that plenty of lncRNAs play important roles in many critical biological processes. Developing powerful computational models to construct lncRNA functional similarity network based on heterogeneous biological datasets is one of the most important and popular topics in the fields of both lncRNAs and complex diseases. Functional similarity network construction could benefit the model development for both lncRNA function inference and lncRNA-disease association identification. However, little effort has been attempted to analysis and calculate lncRNA functional similarity on a large scale. In this study, based on the assumption that functionally similar lncRNAs tend to be associated with similar diseases, we developed two novel lncRNA functional similarity calculation models (LNCSIM). LNCSIM was evaluated by introducing similarity scores into the model of Laplacian Regularized Least Squares for LncRNA-Disease Association (LRLSLDA) for lncRNA-disease association prediction. As a result, new predictive models improved the performance of LRLSLDA in the leave-one-out cross validation of various known lncRNA-disease associations datasets. Furthermore, some of the predictive results for colorectal cancer and lung cancer were verified by independent biological experimental studies. It is anticipated that LNCSIM could be a useful and important biological tool for human disease diagnosis, treatment, and prevention. PMID:26061969

  14. Abel's Theorem Simplifies Reduction of Order

    ERIC Educational Resources Information Center

    Green, William R.

    2011-01-01

    We give an alternative to the standard method of reduction or order, in which one uses one solution of a homogeneous, linear, second order differential equation to find a second, linearly independent solution. Our method, based on Abel's Theorem, is shorter, less complex and extends to higher order equations.

  15. Similarity of fluctuations in correlated systems: The case of seismicity

    SciTech Connect

    Varotsos, P.A.; Sarlis, N.V.; Tanaka, H.K.; Skordas, E.S.

    2005-10-01

    We report a similarity of fluctuations in equilibrium critical phenomena and nonequilibrium systems, which is based on the concept of natural time. The worldwide seismicity as well as that of the San Andreas fault system and Japan are analyzed. An order parameter is chosen and its fluctuations relative to the standard deviation of the distribution are studied. We find that the scaled distributions fall on the same curve, which interestingly exhibits, over four orders of magnitude, features similar to those in several equilibrium critical phenomena (e.g., two-dimensional Ising model) as well as in nonequilibrium systems (e.g., three-dimensional turbulent flow)

  16. Similarity of fluctuations in correlated systems: the case of seismicity.

    PubMed

    Varotsos, P A; Sarlis, N V; Tanaka, H K; Skordas, E S

    2005-10-01

    We report a similarity of fluctuations in equilibrium critical phenomena and nonequilibrium systems, which is based on the concept of natural time. The worldwide seismicity as well as that of the San Andreas fault system and Japan are analyzed. An order parameter is chosen and its fluctuations relative to the standard deviation of the distribution are studied. We find that the scaled distributions fall on the same curve, which interestingly exhibits, over four orders of magnitude, features similar to those in several equilibrium critical phenomena (e.g., two-dimensional Ising model) as well as in nonequilibrium systems (e.g., three-dimensional turbulent flow). PMID:16383358

  17. Asthma and COPD: Differences and Similarities

    MedlinePlus

    ... and COPD: differences and similarities Share | Asthma and COPD: Differences and Similarities This article has been reviewed ... you could have asthma, or you could have Chronic Obstructive Pulmonary Disease (COPD) , such as emphysema or chronic bronchitis. Because ...

  18. Reconstructing of a Sequence Using Similar Sequences

    Energy Science and Technology Software Center (ESTSC)

    1995-11-28

    SIMSEQ reconstructs sequences from oligos. Similar known sequences are used as a reference. At present, simulated data are being used to develop the algorithm. SIMSEQ generates an initial random sequence, then generates a second sequence that is 60 to 90 percent similar to the first. Next, the second sequence is chopped into its appropriate oligos. All possible sequences are reconstructed to determine the most similar. Those with the highest similarity are printed as output.

  19. Distributed efficient similarity search mechanism in wireless sensor networks.

    PubMed

    Ahmed, Khandakar; Gregory, Mark A

    2015-01-01

    The Wireless Sensor Network similarity search problem has received considerable research attention due to sensor hardware imprecision and environmental parameter variations. Most of the state-of-the-art distributed data centric storage (DCS) schemes lack optimization for similarity queries of events. In this paper, a DCS scheme with metric based similarity searching (DCSMSS) is proposed. DCSMSS takes motivation from vector distance index, called iDistance, in order to transform the issue of similarity searching into the problem of an interval search in one dimension. In addition, a sector based distance routing algorithm is used to efficiently route messages. Extensive simulation results reveal that DCSMSS is highly efficient and significantly outperforms previous approaches in processing similarity search queries. PMID:25751081

  20. Distributed Efficient Similarity Search Mechanism in Wireless Sensor Networks

    PubMed Central

    Ahmed, Khandakar; Gregory, Mark A.

    2015-01-01

    The Wireless Sensor Network similarity search problem has received considerable research attention due to sensor hardware imprecision and environmental parameter variations. Most of the state-of-the-art distributed data centric storage (DCS) schemes lack optimization for similarity queries of events. In this paper, a DCS scheme with metric based similarity searching (DCSMSS) is proposed. DCSMSS takes motivation from vector distance index, called iDistance, in order to transform the issue of similarity searching into the problem of an interval search in one dimension. In addition, a sector based distance routing algorithm is used to efficiently route messages. Extensive simulation results reveal that DCSMSS is highly efficient and significantly outperforms previous approaches in processing similarity search queries. PMID:25751081

  1. Thematic Relations Affect Similarity via Commonalities

    ERIC Educational Resources Information Center

    Golonka, Sabrina; Estes, Zachary

    2009-01-01

    Thematic relations are an important source of perceived similarity. For instance, the "rowing" theme of boats and oars increases their perceived similarity. The mechanism of this effect, however, has not been specified previously. The authors investigated whether thematic relations affect similarity by increasing commonalities or by decreasing…

  2. Similarities between statistically-stationary homogeneous shear turbulence and the logarithmic layer in channels

    NASA Astrophysics Data System (ADS)

    Dong, Siwei; Sekimoto, Atsushi; Jiménez, Javier

    2013-11-01

    The rough independence of the logarithmic layer (LL) of wall-bounded turbulence from the details of the buffer and outer layers, suggests that the interaction of the turbulent fluctuations with the mean shear may be mimicked by statistically-stationary homogeneous shear turbulence (SS-HST) in a finite box. We study SS-HST in boxes for which the statistics best agree with those of the LL. Both flows share similar Corrsin shear parameters, and Reynolds-stress and vorticity anisotropies. Two-point correlation functions show that u and w are constrained by the simulation box and are respectively shorter and narrower for SS-HST than for the LL, but v and the vorticity are roughly of the same size in both flows when Reλ is similar. The transient bursting of v in both flows is quite similar to the linear Orr mechanism, with time scales that are of the same order in both flows. In both cases, a streamwise velocity streak forms and breaks down quasi periodically, and the break down is accompanied by an enhanced flux of momentum, in the form of large-scale ejections and sweeps. Funded by the ERC Multiflow program and CSC.

  3. Structure Modulates Similarity-Based Interference in Sluicing: An Eye Tracking study

    PubMed Central

    Harris, Jesse A.

    2015-01-01

    In cue-based content-addressable approaches to memory, a target and its competitors are retrieved in parallel from memory via a fast, associative cue-matching procedure under a severely limited focus of attention. Such a parallel matching procedure could in principle ignore the serial order or hierarchical structure characteristic of linguistic relations. I present an eye tracking while reading experiment that investigates whether the sentential position of a potential antecedent modulates the strength of similarity-based interference, a well-studied effect in which increased similarity in features between a target and its competitors results in slower and less accurate retrieval overall. The manipulation trades on an independently established Locality bias in sluiced structures to associate a wh-remnant (which ones) in clausal ellipsis with the most local correlate (some wines), as in The tourists enjoyed some wines, but I don't know which ones. The findings generally support cue-based parsing models of sentence processing that are subject to similarity-based interference in retrieval, and provide additional support to the growing body of evidence that retrieval is sensitive to both the structural position of a target antecedent and its competitors, and the specificity or diagnosticity of retrieval cues. PMID:26733893

  4. Independent molecular basis of convergent highland adaptation in maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Convergent evolution is the independent evolution of similar traits in different species or lineages of the same species; this often is a result of adaptation to similar environments, a process referred to as convergent adaptation. We investigate here the molecular basis of convergent adaptation in ...

  5. A Study of Presidents of Independent Colleges and Universities

    ERIC Educational Resources Information Center

    Song, Wei; Hartley, Harold V., III

    2012-01-01

    The Council of Independent Colleges (CIC), a national association representing 640 small and mid-sized independent colleges and universities, supports many professional development programs for higher education leaders. Beginning in 2008 the design of the programs has been informed by research on the career paths of campus leaders in order to help…

  6. Independent and Interdependent Remedial/Developmental Student Learners

    ERIC Educational Resources Information Center

    DeBraak, LaRonna

    2008-01-01

    As scholars continue to debate over the specific skills underprepared students need in order to complete their course of study, perhaps the focus should be on how to tap into students' independent thought processes and encourage students to utilize independent thought to contribute to interdependent groups. Placing value on students' independent…

  7. Genetic similarity and hatching success in birds.

    PubMed Central

    Spottiswoode, Claire; Møller, Anders Pape

    2004-01-01

    The ecological correlates of fitness costs of genetic similarity in free-living, large populations of organisms are poorly understood. Using a dataset of genetic similarity as reflected by band-sharing coefficients of minisatellites, we show that bird species with higher genetic similarity experience elevated hatching failure of eggs, increasing by a factor of six across 99 species. Island distributions and cooperative breeding systems in particular were associated with elevated genetic similarity. These findings provide comparative evidence of detrimental fitness consequences of high genetic similarity across a wide range of species, and help to identify ecological factors potentially associated with increased risk of extinction. PMID:15058437

  8. Manipulation of pure spin current in ferromagnetic metals independent of magnetization

    NASA Astrophysics Data System (ADS)

    Tian, Dai; Li, Yufan; Qu, D.; Huang, S. Y.; Jin, Xiaofeng; Chien, C. L.

    2016-07-01

    Upon the injection of a pure spin current, a ferromagnet, similar to a nonmagnetic metal, also exhibits inverse spin Hall effect (ISHE). We show in Co/Cu/YIG, where the thin Cu layer allows transmission of spin current from YIG into Co but decouples the two ferromagnets, that the interaction between ISHE and ferromagnetic ordering in Co can be unambiguously investigated. By switching on and off the pure spin current contribution, we demonstrate that the ISHE in Co is independent of the direction of the Co magnetization, which clearly suggests that the ISHE in Co is dominated not by the extrinsic impurity scatterings, but from the intrinsic origin.

  9. Model independent determination of the gluon condensate in four dimensional SU(3) gauge theory.

    PubMed

    Bali, Gunnar S; Bauer, Clemens; Pineda, Antonio

    2014-08-29

    We determine the nonperturbative gluon condensate of four-dimensional SU(3) gauge theory in a model-independent way. This is achieved by carefully subtracting high-order perturbation theory results from nonperturbative lattice QCD determinations of the average plaquette. No indications of dimension-two condensates are found. The value of the gluon condensate turns out to be of a similar size as the intrinsic ambiguity inherent to its definition. We also determine the binding energy of a B meson in the heavy quark mass limit. PMID:25215978

  10. Stability of linear systems in second-order form based on structure preserving similarity transformations

    SciTech Connect

    Stoustrup, Jakob; Pommer, Christian; Kliem, Wolfhard

    2015-10-31

    This paper deals with two stability aspects of linear systems of the form I ¨ x +B˙ x +Cx = 0 given by the triple (I;B;C). A general transformation scheme is given for a structure and Jordan form preserving transformation of the triple. We investigate how a system can be transformed by suitable choices of the transformation parameters into a new system (I;B1;C1) with a symmetrizable matrix C1. This procedure facilitates stability investigations. We also consider systems with a Hamiltonian spectrum which discloses marginal stability after a Jordan form preserving transformation.

  11. From Sensory Signals to Modality-Independent Conceptual Representations: A Probabilistic Language of Thought Approach.

    PubMed

    Erdogan, Goker; Yildirim, Ilker; Jacobs, Robert A

    2015-11-01

    People learn modality-independent, conceptual representations from modality-specific sensory signals. Here, we hypothesize that any system that accomplishes this feat will include three components: a representational language for characterizing modality-independent representations, a set of sensory-specific forward models for mapping from modality-independent representations to sensory signals, and an inference algorithm for inverting forward models-that is, an algorithm for using sensory signals to infer modality-independent representations. To evaluate this hypothesis, we instantiate it in the form of a computational model that learns object shape representations from visual and/or haptic signals. The model uses a probabilistic grammar to characterize modality-independent representations of object shape, uses a computer graphics toolkit and a human hand simulator to map from object representations to visual and haptic features, respectively, and uses a Bayesian inference algorithm to infer modality-independent object representations from visual and/or haptic signals. Simulation results show that the model infers identical object representations when an object is viewed, grasped, or both. That is, the model's percepts are modality invariant. We also report the results of an experiment in which different subjects rated the similarity of pairs of objects in different sensory conditions, and show that the model provides a very accurate account of subjects' ratings. Conceptually, this research significantly contributes to our understanding of modality invariance, an important type of perceptual constancy, by demonstrating how modality-independent representations can be acquired and used. Methodologically, it provides an important contribution to cognitive modeling, particularly an emerging probabilistic language-of-thought approach, by showing how symbolic and statistical approaches can be combined in order to understand aspects of human perception. PMID:26554704

  12. From Sensory Signals to Modality-Independent Conceptual Representations: A Probabilistic Language of Thought Approach

    PubMed Central

    Erdogan, Goker; Yildirim, Ilker; Jacobs, Robert A.

    2015-01-01

    People learn modality-independent, conceptual representations from modality-specific sensory signals. Here, we hypothesize that any system that accomplishes this feat will include three components: a representational language for characterizing modality-independent representations, a set of sensory-specific forward models for mapping from modality-independent representations to sensory signals, and an inference algorithm for inverting forward models—that is, an algorithm for using sensory signals to infer modality-independent representations. To evaluate this hypothesis, we instantiate it in the form of a computational model that learns object shape representations from visual and/or haptic signals. The model uses a probabilistic grammar to characterize modality-independent representations of object shape, uses a computer graphics toolkit and a human hand simulator to map from object representations to visual and haptic features, respectively, and uses a Bayesian inference algorithm to infer modality-independent object representations from visual and/or haptic signals. Simulation results show that the model infers identical object representations when an object is viewed, grasped, or both. That is, the model’s percepts are modality invariant. We also report the results of an experiment in which different subjects rated the similarity of pairs of objects in different sensory conditions, and show that the model provides a very accurate account of subjects’ ratings. Conceptually, this research significantly contributes to our understanding of modality invariance, an important type of perceptual constancy, by demonstrating how modality-independent representations can be acquired and used. Methodologically, it provides an important contribution to cognitive modeling, particularly an emerging probabilistic language-of-thought approach, by showing how symbolic and statistical approaches can be combined in order to understand aspects of human perception. PMID

  13. Mosaic. Hispanic Sub-Cultural Values: Similarities and Differences.

    ERIC Educational Resources Information Center

    Rutgers, The State Univ., New Brunswick, NJ. Inst. for Intercultural Relations and Ethnic Studies.

    This issue of Mosaic magazine contains several articles focusing on the similarities and differences between different Hispanic groups. Each article examines a specific Hispanic culture in order to improve existing and future intercultural education and to foster cultural awareness. The following topics are addressed: (1) values involved in…

  14. Dimensionality in the Similarity Judgments of Young Children.

    ERIC Educational Resources Information Center

    Fahrmeier, Edward D.; Medin, Douglas L.

    In order to examine the nature of dimensional processing in children, 20 kindergarten and 20 third grade Chinese-American children were asked to make similarity judgments for unidimensional sets of stimuli differing in color (hue), size, and shape, respectively. Age differences were generally confined to the color set. The judgments of the older…

  15. Marketing Handbook for Independent Schools.

    ERIC Educational Resources Information Center

    Boarding Schools, Boston, MA.

    This publication is a resource to help independent schools attract more familites to their institutions and to increase the voluntary support by the larger community surrounding the school. The first chapter attempts to dispel misconceptions, define pertinent marketing terms, and relate their importance to independent schools. The rest of the book…

  16. Independent Learning Models: A Comparison.

    ERIC Educational Resources Information Center

    Wickett, R. E. Y.

    Five models of independent learning are suitable for use in adult education programs. The common factor is a facilitator who works in some way with the student in the learning process. They display different characteristics, including the extent of independence in relation to content and/or process. Nondirective tutorial instruction and learning…

  17. Transition-Independent Decentralized Markov Decision Processes

    NASA Technical Reports Server (NTRS)

    Becker, Raphen; Silberstein, Shlomo; Lesser, Victor; Goldman, Claudia V.; Morris, Robert (Technical Monitor)

    2003-01-01

    There has been substantial progress with formal models for sequential decision making by individual agents using the Markov decision process (MDP). However, similar treatment of multi-agent systems is lacking. A recent complexity result, showing that solving decentralized MDPs is NEXP-hard, provides a partial explanation. To overcome this complexity barrier, we identify a general class of transition-independent decentralized MDPs that is widely applicable. The class consists of independent collaborating agents that are tied up by a global reward function that depends on both of their histories. We present a novel algorithm for solving this class of problems and examine its properties. The result is the first effective technique to solve optimally a class of decentralized MDPs. This lays the foundation for further work in this area on both exact and approximate solutions.

  18. Boosting medical diagnostics by pooling independent judgments

    PubMed Central

    Kurvers, Ralf H. J. M.; Herzog, Stefan M.; Hertwig, Ralph; Krause, Jens; Carney, Patricia A.; Bogart, Andy; Argenziano, Giuseppe; Zalaudek, Iris; Wolf, Max

    2016-01-01

    Collective intelligence refers to the ability of groups to outperform individual decision makers when solving complex cognitive problems. Despite its potential to revolutionize decision making in a wide range of domains, including medical, economic, and political decision making, at present, little is known about the conditions underlying collective intelligence in real-world contexts. We here focus on two key areas of medical diagnostics, breast and skin cancer detection. Using a simulation study that draws on large real-world datasets, involving more than 140 doctors making more than 20,000 diagnoses, we investigate when combining the independent judgments of multiple doctors outperforms the best doctor in a group. We find that similarity in diagnostic accuracy is a key condition for collective intelligence: Aggregating the independent judgments of doctors outperforms the best doctor in a group whenever the diagnostic accuracy of doctors is relatively similar, but not when doctors’ diagnostic accuracy differs too much. This intriguingly simple result is highly robust and holds across different group sizes, performance levels of the best doctor, and collective intelligence rules. The enabling role of similarity, in turn, is explained by its systematic effects on the number of correct and incorrect decisions of the best doctor that are overruled by the collective. By identifying a key factor underlying collective intelligence in two important real-world contexts, our findings pave the way for innovative and more effective approaches to complex real-world decision making, and to the scientific analyses of those approaches. PMID:27432950

  19. Boosting medical diagnostics by pooling independent judgments.

    PubMed

    Kurvers, Ralf H J M; Herzog, Stefan M; Hertwig, Ralph; Krause, Jens; Carney, Patricia A; Bogart, Andy; Argenziano, Giuseppe; Zalaudek, Iris; Wolf, Max

    2016-08-01

    Collective intelligence refers to the ability of groups to outperform individual decision makers when solving complex cognitive problems. Despite its potential to revolutionize decision making in a wide range of domains, including medical, economic, and political decision making, at present, little is known about the conditions underlying collective intelligence in real-world contexts. We here focus on two key areas of medical diagnostics, breast and skin cancer detection. Using a simulation study that draws on large real-world datasets, involving more than 140 doctors making more than 20,000 diagnoses, we investigate when combining the independent judgments of multiple doctors outperforms the best doctor in a group. We find that similarity in diagnostic accuracy is a key condition for collective intelligence: Aggregating the independent judgments of doctors outperforms the best doctor in a group whenever the diagnostic accuracy of doctors is relatively similar, but not when doctors' diagnostic accuracy differs too much. This intriguingly simple result is highly robust and holds across different group sizes, performance levels of the best doctor, and collective intelligence rules. The enabling role of similarity, in turn, is explained by its systematic effects on the number of correct and incorrect decisions of the best doctor that are overruled by the collective. By identifying a key factor underlying collective intelligence in two important real-world contexts, our findings pave the way for innovative and more effective approaches to complex real-world decision making, and to the scientific analyses of those approaches. PMID:27432950

  20. Audiotactile temporal order judgments.

    PubMed

    Zampini, Massimiliano; Brown, Timothy; Shore, David I; Maravita, Angelo; Röder, Brigitte; Spence, Charles

    2005-03-01

    We report a series of three experiments in which participants made unspeeded 'Which modality came first?' temporal order judgments (TOJs) to pairs of auditory and tactile stimuli presented at varying stimulus onset asynchronies (SOAs) using the method of constant stimuli. The stimuli were presented from either the same or different locations in order to explore the potential effect of redundant spatial information on audiotactile temporal perception. In Experiment 1, the auditory and tactile stimuli had to be separated by nearly 80 ms for inexperienced participants to be able to judge their temporal order accurately (i.e., for the just noticeable difference (JND) to be achieved), no matter whether the stimuli were presented from the same or different spatial positions. More experienced psychophysical observers (Experiment 2) also failed to show any effect of relative spatial position on audiotactile TOJ performance, despite having much lower JNDs (40 ms) overall. A similar pattern of results was found in Experiment 3 when silent electrocutaneous stimulation was used rather than vibrotactile stimulation. Thus, relative spatial position seems to be a less important factor in determining performance for audiotactile TOJ than for other modality pairings (e.g., audiovisual and visuotactile). PMID:15698825

  1. Evaluating Whole Chemical Mixtures and Sufficient Similarity

    EPA Science Inventory

    This powerpoint presentation supports apresentation describing dose-response assessment for complex chemical mixtures including deriving reference doses for mixtures evaluating sufficient similarity among chemical mixtures.

  2. Hybrid control approach for seismic coupling of two similar adjacent structures

    NASA Astrophysics Data System (ADS)

    Park, Kwan-Soon; Ok, Seung-Yong

    2015-08-01

    This study describes an optimal hybrid control approach of two similar adjacent buildings for seismic performance improvement, for which the passive dampers are used as link members between the two parallel buildings and the active control devices are installed as tendon-type devices between two successive floors in the buildings. Throughout this configuration, the passive coupling dampers modulate the relative responses between the two buildings and the active control devices modulate the inter-story responses of each building. In order to achieve global optimal control performance, genetic algorithm is employed to perform an integrated design approach for the system of buildings and hybrid control devices. Through the optimization process, the passive and active devices are optimally distributed along the floors and, simultaneously, their damping capacities and active controllers are configured in accordance with the distribution. The proposed approach is demonstrated in comparison with typical active control system which consists of two independent active systems without any connections between two buildings, each being optimal for one particular building. The numerical simulation results for a system of 20-story and 16-story buildings reveal that the proposed system can guarantee the competent control performance over the typical independent active system with less control forces and powers. As a result, it is proved that the proposed approach enables the simultaneous optimization of the control performance and the control cost.

  3. Imaging Brain Dynamics Using Independent Component Analysis

    PubMed Central

    Jung, Tzyy-Ping; Makeig, Scott; McKeown, Martin J.; Bell, Anthony J.; Lee, Te-Won; Sejnowski, Terrence J.

    2010-01-01

    The analysis of electroencephalographic (EEG) and magnetoencephalographic (MEG) recordings is important both for basic brain research and for medical diagnosis and treatment. Independent component analysis (ICA) is an effective method for removing artifacts and separating sources of the brain signals from these recordings. A similar approach is proving useful for analyzing functional magnetic resonance brain imaging (fMRI) data. In this paper, we outline the assumptions underlying ICA and demonstrate its application to a variety of electrical and hemodynamic recordings from the human brain. PMID:20824156

  4. Investigation of psychophysical similarity measures for selection of similar images in the diagnosis of clustered microcalcifications on mammograms

    SciTech Connect

    Muramatsu, Chisako; Li Qiang; Schmidt, Robert; Shiraishi, Junji; Doi, Kunio

    2008-12-15

    The presentation of images with lesions of known pathology that are similar to an unknown lesion may be helpful to radiologists in the diagnosis of challenging cases for improving the diagnostic accuracy and also for reducing variation among different radiologists. The authors have been developing a computerized scheme for automatically selecting similar images with clustered microcalcifications on mammograms from a large database. For similar images to be useful, they must be similar from the point of view of the diagnosing radiologists. In order to select such images, subjective similarity ratings were obtained for a number of pairs of clustered microcalcifications by breast radiologists for establishment of a ''gold standard'' of image similarity, and the gold standard was employed for determination and evaluation of the selection of similar images. The images used in this study were obtained from the Digital Database for Screening Mammography developed by the University of South Florida. The subjective similarity ratings for 300 pairs of images with clustered microcalcifications were determined by ten breast radiologists. The authors determined a number of image features which represent the characteristics of clustered microcalcifications that radiologists would use in their diagnosis. For determination of objective similarity measures, an artificial neural network (ANN) was employed. The ANN was trained with the average subjective similarity ratings as teacher and selected image features as input data. The ANN was trained to learn the relationship between the image features and the radiologists' similarity ratings; therefore, once the training was completed, the ANN was able to determine the similarity, called a psychophysical similarity measure, which was expected to be close to radiologists' impressions, for an unknown pair of clustered microcalcifications. By use of a leave-one-out test method, the best combination of features was selected. The correlation

  5. Marking Student Programs Using Graph Similarity

    ERIC Educational Resources Information Center

    Naude, Kevin A.; Greyling, Jean H.; Vogts, Dieter

    2010-01-01

    We present a novel approach to the automated marking of student programming assignments. Our technique quantifies the structural similarity between unmarked student submissions and marked solutions, and is the basis by which we assign marks. This is accomplished through an efficient novel graph similarity measure ("AssignSim"). Our experiments…

  6. Stability of similarity measurements for bipartite networks

    PubMed Central

    Liu, Jian-Guo; Hou, Lei; Pan, Xue; Guo, Qiang; Zhou, Tao

    2016-01-01

    Similarity is a fundamental measure in network analyses and machine learning algorithms, with wide applications ranging from personalized recommendation to socio-economic dynamics. We argue that an effective similarity measurement should guarantee the stability even under some information loss. With six bipartite networks, we investigate the stabilities of fifteen similarity measurements by comparing the similarity matrixes of two data samples which are randomly divided from original data sets. Results show that, the fifteen measurements can be well classified into three clusters according to their stabilities, and measurements in the same cluster have similar mathematical definitions. In addition, we develop a top-n-stability method for personalized recommendation, and find that the unstable similarities would recommend false information to users, and the performance of recommendation would be largely improved by using stable similarity measurements. This work provides a novel dimension to analyze and evaluate similarity measurements, which can further find applications in link prediction, personalized recommendation, clustering algorithms, community detection and so on. PMID:26725688

  7. Stability of similarity measurements for bipartite networks.

    PubMed

    Liu, Jian-Guo; Hou, Lei; Pan, Xue; Guo, Qiang; Zhou, Tao

    2016-01-01

    Similarity is a fundamental measure in network analyses and machine learning algorithms, with wide applications ranging from personalized recommendation to socio-economic dynamics. We argue that an effective similarity measurement should guarantee the stability even under some information loss. With six bipartite networks, we investigate the stabilities of fifteen similarity measurements by comparing the similarity matrixes of two data samples which are randomly divided from original data sets. Results show that, the fifteen measurements can be well classified into three clusters according to their stabilities, and measurements in the same cluster have similar mathematical definitions. In addition, we develop a top-n-stability method for personalized recommendation, and find that the unstable similarities would recommend false information to users, and the performance of recommendation would be largely improved by using stable similarity measurements. This work provides a novel dimension to analyze and evaluate similarity measurements, which can further find applications in link prediction, personalized recommendation, clustering algorithms, community detection and so on. PMID:26725688

  8. Documents Similarity Measurement Using Field Association Terms.

    ERIC Educational Resources Information Center

    Atlam, El-Sayed; Fuketa, M.; Morita, K.; Aoe, Jun-ichi

    2003-01-01

    Discussion of text analysis and information retrieval and measurement of document similarity focuses on a new text manipulation system called FA (field association)-Sim that is useful for retrieving information in large heterogeneous texts and for recognizing content similarity in text excerpts. Discusses recall and precision, automatic indexing…

  9. Perceived Similarity, Proactive Adjustment, and Organizational Socialization

    ERIC Educational Resources Information Center

    Kammeyer-Mueller, John D.; Livingston, Beth A.; Liao, Hui

    2011-01-01

    The present study explores how perceived demographic and attitudinal similarity can influence proactive behavior among organizational newcomers. We propose that newcomers who perceive themselves as similar to their co-workers will be more willing to seek new information or build relationships, which in turn will lead to better long-term…

  10. Similarity Measures for Boolean Search Request Formulations.

    ERIC Educational Resources Information Center

    Radecki, Tadeusz

    1982-01-01

    Proposes a means for determining the similarity between search request formulations in online information retrieval systems, and discusses the use of similarity measures for clustering search formulations and document files in such systems. Experimental results using the proposed methods are presented in three tables. A reference list is provided.…

  11. Attitude Similarity, Topic Importance, and Psychotherapeutic Attraction

    ERIC Educational Resources Information Center

    Cheney, Thomas

    1975-01-01

    The effect of attitude similarity and topic importance on attraction was studied by exposing 75 prison inmates, incarcerated for public intoxication, to varying attitudes of a psychotherapist. Subjects were more attracted to the therapist after receiving alcohol items regardless of degree of similarity expressed. (Author)

  12. Some Effects of Similarity Self-Disclosure

    ERIC Educational Resources Information Center

    Murphy, Kevin C.; Strong, Stanley R.

    1972-01-01

    College males were interviewed about how college had altered their friendships, values, and plans. The interviewers diclosed experiences and feelings similar to those revealed by the students. Results support Byrne's Law of Similarity in generating interpersonal attraction in the interview and suggest that the timing of self-disclosures is…

  13. Stability of similarity measurements for bipartite networks

    NASA Astrophysics Data System (ADS)

    Liu, Jian-Guo; Hou, Lei; Pan, Xue; Guo, Qiang; Zhou, Tao

    2016-01-01

    Similarity is a fundamental measure in network analyses and machine learning algorithms, with wide applications ranging from personalized recommendation to socio-economic dynamics. We argue that an effective similarity measurement should guarantee the stability even under some information loss. With six bipartite networks, we investigate the stabilities of fifteen similarity measurements by comparing the similarity matrixes of two data samples which are randomly divided from original data sets. Results show that, the fifteen measurements can be well classified into three clusters according to their stabilities, and measurements in the same cluster have similar mathematical definitions. In addition, we develop a top-n-stability method for personalized recommendation, and find that the unstable similarities would recommend false information to users, and the performance of recommendation would be largely improved by using stable similarity measurements. This work provides a novel dimension to analyze and evaluate similarity measurements, which can further find applications in link prediction, personalized recommendation, clustering algorithms, community detection and so on.

  14. Sequence independent amplification of DNA

    DOEpatents

    Bohlander, S.K.

    1998-03-24

    The present invention is a rapid sequence-independent amplification procedure (SIA). Even minute amounts of DNA from various sources can be amplified independent of any sequence requirements of the DNA or any a priori knowledge of any sequence characteristics of the DNA to be amplified. This method allows, for example, the sequence independent amplification of microdissected chromosomal material and the reliable construction of high quality fluorescent in situ hybridization (FISH) probes from YACs or from other sources. These probes can be used to localize YACs on metaphase chromosomes but also--with high efficiency--in interphase nuclei. 25 figs.

  15. Biographical factors of occupational independence.

    PubMed

    Müller, G F

    2001-10-01

    The present study examined biographical factors of occupational independence including any kind of nonemployed profession. Participants were 59 occupationally independent and 58 employed persons of different age (M = 36.3 yr.), sex, and profession. They were interviewed on variables like family influence, educational background, occupational role models, and critical events for choosing a particular type of occupational career. The obtained results show that occupationally independent people reported stronger family ties, experienced fewer restrictions of formal education, and remembered fewer negative role models than the employed people. Implications of these results are discussed. PMID:11783553

  16. Sequence independent amplification of DNA

    DOEpatents

    Bohlander, Stefan K.

    1998-01-01

    The present invention is a rapid sequence-independent amplification procedure (SIA). Even minute amounts of DNA from various sources can be amplified independent of any sequence requirements of the DNA or any a priori knowledge of any sequence characteristics of the DNA to be amplified. This method allows, for example the sequence independent amplification of microdissected chromosomal material and the reliable construction of high quality fluorescent in situ hybridization (FISH) probes from YACs or from other sources. These probes can be used to localize YACs on metaphase chromosomes but also--with high efficiency--in interphase nuclei.

  17. Exact score distribution computation for ontological similarity searches

    PubMed Central

    2011-01-01

    Background Semantic similarity searches in ontologies are an important component of many bioinformatic algorithms, e.g., finding functionally related proteins with the Gene Ontology or phenotypically similar diseases with the Human Phenotype Ontology (HPO). We have recently shown that the performance of semantic similarity searches can be improved by ranking results according to the probability of obtaining a given score at random rather than by the scores themselves. However, to date, there are no algorithms for computing the exact distribution of semantic similarity scores, which is necessary for computing the exact P-value of a given score. Results In this paper we consider the exact computation of score distributions for similarity searches in ontologies, and introduce a simple null hypothesis which can be used to compute a P-value for the statistical significance of similarity scores. We concentrate on measures based on Resnik's definition of ontological similarity. A new algorithm is proposed that collapses subgraphs of the ontology graph and thereby allows fast score distribution computation. The new algorithm is several orders of magnitude faster than the naive approach, as we demonstrate by computing score distributions for similarity searches in the HPO. It is shown that exact P-value calculation improves clinical diagnosis using the HPO compared to approaches based on sampling. Conclusions The new algorithm enables for the first time exact P-value calculation via exact score distribution computation for ontology similarity searches. The approach is applicable to any ontology for which the annotation-propagation rule holds and can improve any bioinformatic method that makes only use of the raw similarity scores. The algorithm was implemented in Java, supports any ontology in OBO format, and is available for non-commercial and academic usage under: https://compbio.charite.de/svn/hpo/trunk/src/tools/significance/ PMID:22078312

  18. Similarity analysis of compressor tip clearance flow structure

    NASA Technical Reports Server (NTRS)

    Chen, G. T.; Greitzer, E. M.; Tan, C. S.; Marble, F. E.

    1991-01-01

    A new approach is presented for analyzing compressor tip clearance flow. The basic idea is that the clearance velocity field can be (approximately) decomposed into independent throughflow and crossflow, since chordwise pressure gradients are much smaller than normal pressure gradients in the clearance region. As in the slender body approximation in external aerodynamics, this description implies that the three-dimensional steady clearance flow can be viewed as a two-dimensional, unsteady flow. Using this approach, a similarity scaling for the crossflow in the clearance region is developed and a generalized description of the clearance vortex is derived. Calculations based on the similarity scaling agree well with a wide range of experimental data in regard to flow features such as crossflow velocity field, static pressure field, and tip clearance vortex trajectory.

  19. On the Ephemeral Nature of the Relationship between Attitude Similarity and Interpersonal Attraction during Initial Encounters.

    ERIC Educational Resources Information Center

    Sunnafrank, Michael J.; Miller, Gerald R.

    A study was conducted to identify the independent and conjoint influence of attitude similarity and initial interactions on interpersonal attraction to relative strangers. The 124 college students who were participants in the study were informed that they would be working on a project with either an attitudinally similar or dissimilar stranger…

  20. Ultra-accurate collaborative information filtering via directed user similarity

    NASA Astrophysics Data System (ADS)

    Guo, Q.; Song, W.-J.; Liu, J.-G.

    2014-07-01

    A key challenge of the collaborative filtering (CF) information filtering is how to obtain the reliable and accurate results with the help of peers' recommendation. Since the similarities from small-degree users to large-degree users would be larger than the ones in opposite direction, the large-degree users' selections are recommended extensively by the traditional second-order CF algorithms. By considering the users' similarity direction and the second-order correlations to depress the influence of mainstream preferences, we present the directed second-order CF (HDCF) algorithm specifically to address the challenge of accuracy and diversity of the CF algorithm. The numerical results for two benchmark data sets, MovieLens and Netflix, show that the accuracy of the new algorithm outperforms the state-of-the-art CF algorithms. Comparing with the CF algorithm based on random walks proposed by Liu et al. (Int. J. Mod. Phys. C, 20 (2009) 285) the average ranking score could reach 0.0767 and 0.0402, which is enhanced by 27.3% and 19.1% for MovieLens and Netflix, respectively. In addition, the diversity, precision and recall are also enhanced greatly. Without relying on any context-specific information, tuning the similarity direction of CF algorithms could obtain accurate and diverse recommendations. This work suggests that the user similarity direction is an important factor to improve the personalized recommendation performance.

  1. Whatever Happened to Independent Inventors?

    ERIC Educational Resources Information Center

    Douglas, John H.

    1976-01-01

    Discuss the increasing problems, facing the private innovator, which may seriously affect the progress of American technology. Statistics show a decrease in patents issued to independent inventors. Information concerning patents, suggested cautions, and useful publications are cited. (Author/EB)

  2. Independent Schools: Landscape and Learnings.

    ERIC Educational Resources Information Center

    Oates, William A.

    1981-01-01

    Examines American independent schools (parochial, southern segregated, and private institutions) in terms of their funding, expenditures, changing enrollment patterns, teacher-student ratios, and societal functions. Journal available from Daedalus Subscription Department, 1172 Commonwealth Ave., Boston, MA 02132. (AM)

  3. Technology for Independent Living: Sourcebook.

    ERIC Educational Resources Information Center

    Enders, Alexandra, Ed.

    This sourcebook provides information for the practical implementation of independent living technology in the everyday rehabilitation process. "Information Services and Resources" lists databases, clearinghouses, networks, research and development programs, toll-free telephone numbers, consumer protection caveats, selected publications, and…

  4. The baryonic self similarity of dark matter

    SciTech Connect

    Alard, C.

    2014-06-20

    The cosmological simulations indicates that dark matter halos have specific self-similar properties. However, the halo similarity is affected by the baryonic feedback. By using momentum-driven winds as a model to represent the baryon feedback, an equilibrium condition is derived which directly implies the emergence of a new type of similarity. The new self-similar solution has constant acceleration at a reference radius for both dark matter and baryons. This model receives strong support from the observations of galaxies. The new self-similar properties imply that the total acceleration at larger distances is scale-free, the transition between the dark matter and baryons dominated regime occurs at a constant acceleration, and the maximum amplitude of the velocity curve at larger distances is proportional to M {sup 1/4}. These results demonstrate that this self-similar model is consistent with the basics of modified Newtonian dynamics (MOND) phenomenology. In agreement with the observations, the coincidence between the self-similar model and MOND breaks at the scale of clusters of galaxies. Some numerical experiments show that the behavior of the density near the origin is closely approximated by a Einasto profile.

  5. Measure of Node Similarity in Multilayer Networks

    PubMed Central

    Mollgaard, Anders; Zettler, Ingo; Dammeyer, Jesper; Jensen, Mogens H.; Lehmann, Sune; Mathiesen, Joachim

    2016-01-01

    The weight of links in a network is often related to the similarity of the nodes. Here, we introduce a simple tunable measure for analysing the similarity of nodes across different link weights. In particular, we use the measure to analyze homophily in a group of 659 freshman students at a large university. Our analysis is based on data obtained using smartphones equipped with custom data collection software, complemented by questionnaire-based data. The network of social contacts is represented as a weighted multilayer network constructed from different channels of telecommunication as well as data on face-to-face contacts. We find that even strongly connected individuals are not more similar with respect to basic personality traits than randomly chosen pairs of individuals. In contrast, several socio-demographics variables have a significant degree of similarity. We further observe that similarity might be present in one layer of the multilayer network and simultaneously be absent in the other layers. For a variable such as gender, our measure reveals a transition from similarity between nodes connected with links of relatively low weight to dis-similarity for the nodes connected by the strongest links. We finally analyze the overlap between layers in the network for different levels of acquaintanceships. PMID:27300084

  6. Gait Signal Analysis with Similarity Measure

    PubMed Central

    Shin, Seungsoo

    2014-01-01

    Human gait decision was carried out with the help of similarity measure design. Gait signal was selected through hardware implementation including all in one sensor, control unit, and notebook with connector. Each gait signal was considered as high dimensional data. Therefore, high dimensional data analysis was considered via heuristic technique such as the similarity measure. Each human pattern such as walking, sitting, standing, and stepping up was obtained through experiment. By the results of the analysis, we also identified the overlapped and nonoverlapped data relation, and similarity measure analysis was also illustrated, and comparison with conventional similarity measure was also carried out. Hence, nonoverlapped data similarity analysis provided the clue to solve the similarity of high dimensional data. Considered high dimensional data analysis was designed with consideration of neighborhood information. Proposed similarity measure was applied to identify the behavior patterns of different persons, and different behaviours of the same person. Obtained analysis can be extended to organize health monitoring system for specially elderly persons. PMID:25110724

  7. Measure of Node Similarity in Multilayer Networks.

    PubMed

    Mollgaard, Anders; Zettler, Ingo; Dammeyer, Jesper; Jensen, Mogens H; Lehmann, Sune; Mathiesen, Joachim

    2016-01-01

    The weight of links in a network is often related to the similarity of the nodes. Here, we introduce a simple tunable measure for analysing the similarity of nodes across different link weights. In particular, we use the measure to analyze homophily in a group of 659 freshman students at a large university. Our analysis is based on data obtained using smartphones equipped with custom data collection software, complemented by questionnaire-based data. The network of social contacts is represented as a weighted multilayer network constructed from different channels of telecommunication as well as data on face-to-face contacts. We find that even strongly connected individuals are not more similar with respect to basic personality traits than randomly chosen pairs of individuals. In contrast, several socio-demographics variables have a significant degree of similarity. We further observe that similarity might be present in one layer of the multilayer network and simultaneously be absent in the other layers. For a variable such as gender, our measure reveals a transition from similarity between nodes connected with links of relatively low weight to dis-similarity for the nodes connected by the strongest links. We finally analyze the overlap between layers in the network for different levels of acquaintanceships. PMID:27300084

  8. Birth order and myopia

    PubMed Central

    Guggenheim, Jeremy A.; McMahon, George; Northstone, Kate; Mandel, Yossi; Kaiserman, Igor; Stone, Richard A.; Lin, Xiaoyu; Saw, Seang Mei; Forward, Hannah; Mackey, David A.; Yazar, Seyhan; Young, Terri L.; Williams, Cathy

    2013-01-01

    Purpose An association between birth order and reduced unaided vision (a surrogate for myopia) has been observed previously. We examined the association between birth order and myopia directly in 4 subject groups. Methods Subject groups were participants in 1) the Avon Longitudinal Study of Parents and Children (ALSPAC; UK; age 15 years; N=4,401), 2) the Singapore Cohort Study of Risk Factors for Myopia (SCORM; Singapore; age 13 years; N=1,959), 3) the Raine Eye Health Study (REHS; Australia; age 20 years; N=1,344), and 4) Israeli Defense Force recruitment candidates (IDFC; Israel; age 16-22 years; N=888,277). Main outcome: Odds ratio (OR) for myopia in first born versus non-first born individuals after adjusting for potential risk factors. Results The prevalence of myopia was numerically higher in first-born versus non-first-born individuals in all study groups, but the strength of evidence varied widely. The adjusted ORs (95% CI) were: ALSPAC, 1.31 (1.05-1.64); SCORM, 1.25 (0.89-1.77); REHS, 1.18 (0.90-1.55); IDFC, 1.04 (1.03-1.06). In the large IDFC sample, the effect size was greater (a) for the first born versus fourth or higher born comparison than for the first born versus second/third born comparison (P<0.001) and (b) with increasing myopia severity (P<0.001). Conclusions Across all studies, the increased risk of myopia in first born individuals was low (OR <1.3). Indeed, only the studies with >4000 participants provided strong statistical support for the association. The available evidence suggested the relationship was independent of established risk factors such as time outdoors/reading, and thus may arise through a different causal mechanism. PMID:24168726

  9. Similar Genetic Mechanisms Underlie the Parallel Evolution of Floral Phenotypes

    PubMed Central

    Zhang, Wenheng; Kramer, Elena M.; Davis, Charles C.

    2012-01-01

    The repeated origin of similar phenotypes is invaluable for studying the underlying genetics of adaptive traits; molecular evidence, however, is lacking for most examples of such similarity. The floral morphology of neotropical Malpighiaceae is distinctive and highly conserved, especially with regard to symmetry, and is thought to result from specialization on oil-bee pollinators. We recently demonstrated that CYCLOIDEA2–like genes (CYC2A and CYC2B) are associated with the development of the stereotypical floral zygomorphy that is critical to this plant–pollinator mutualism. Here, we build on this developmental framework to characterize floral symmetry in three clades of Malpighiaceae that have independently lost their oil bee association and experienced parallel shifts in their floral morphology, especially in regard to symmetry. We show that in each case these species exhibit a loss of CYC2B function, and a strikingly similar shift in the expression of CYC2A that is coincident with their shift in floral symmetry. These results indicate that similar floral phenotypes in this large angiosperm clade have evolved via parallel genetic changes from an otherwise highly conserved developmental program. PMID:22558314

  10. Order, chaos and nuclear dynamics: An introduction

    SciTech Connect

    Swiatecki, W.J.

    1990-08-01

    This is an introductory lecture illustrating by simple examples the anticipated effect on collective nuclear dynamics of a transition from order to chaos in the motions of nucleons inside an idealized nucleus. The destruction of order is paralleled by a transition from a rubber-like to a honey-like behaviour of the independent-particle nuclear model. 10 refs., 6 figs.