Science.gov

Sample records for pllup henn ojaveer

  1. 4He+n+n continuum within an ab initio framework

    DOE PAGESBeta

    Romero-Redondo, Carolina; Quaglioni, Sofia; Navratil, Petr; Hupin, Guillaume

    2014-07-16

    In this study, the low-lying continuum spectrum of the 6He nucleus is investigated for the first time within an ab initio framework that encompasses the 4He+n+n three-cluster dynamics characterizing its lowest decay channel. This is achieved through an extension of the no-core shell model combined with the resonating-group method, in which energy-independent nonlocal interactions among three nuclear fragments can be calculated microscopically, starting from realistic nucleon-nucleon interactions and consistent ab initio many-body wave functions of the clusters. The three-cluster Schrödinger equation is solved with three-body scattering boundary conditions by means of the hyperspherical-harmonics method on a Lagrange mesh. Using amore » soft similarity-renormalization-group evolved chiral nucleon-nucleon potential, we find the known Jπ = 2+ resonance as well as a result consistent with a new low-lying second 2+ resonance recently observed at GANIL at ~2.6 MeV above the He6 ground state. We also find resonances in the 2–, 1+, and 0– channels, while no low-lying resonances are present in the 0+ and 1– channels.« less

  2. Sequencing of an Anthracnose-resistant sorghum genotype and mapping of a major QTL reveal strong candidate genes for Anthracnose resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Anthracnose, caused by the fungal pathogen Colletotrichum sublineolum Henn. ex. Sacc. and Trotter 1913, is an economically damaging disease of sorghum [Sorghum bicolor (L.) Moench] in hot and humid production regions of the world. Control of anthracnose is almost exclusively through the use of genet...

  3. Evaluation and Characterization of Seedling Resistances to Stem Rust Ug99 Races in Wheat-Alien Species Derivatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Stem rust, a devastating disease (caused by Puccinia graminis Pers.:Pers. f. sp. tritici Eriks. & Henn.) of wheat (Triticum aestivium L.), has been effectively controlled worldwide for the past 50 years by deployment of stem rust resistance (Sr) genes in wheat cultivars. However, a new stem rust ra...

  4. Mapping resistance to the Ug99 race group of the stem rust pathogen in a spring wheat landrace

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat landrace PI 374670 has seedling and field resistance to stem rust caused by Puccinia graminis f. sp tritici Eriks. & E. Henn (Pgt) race TTKSK. To elucidate the inheritance of resistance, 216 BC1F2 families, 192 double haploid (DH) lines, and 185 recombinant inbred lines (RILs) were developed b...

  5. Genotyping-by-sequencing to re-map QTL for type II Fusarium head blight and leaf rust resistance in a wheat-tall wheatgrass introgression recombinant inbred population

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fusarium graminaerum (Fusarium head blight; FHB) and Puccinia recondita Roberge ex Desmaz. f. sp. tritici Eriks. & E. Henn (leaf rust; LR) are two major fungal pathogens threatening the wheat crop; consequently identifying resistance genes from various sources is always of importance to wheat breede...

  6. Sources of resistance to stem rust race Ug99 in spring wheat germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat stem rust (Puccinia graminis Pers.:Pers. f. sp. tritici Eriks & E. Henn.) race TTKSK (Ug99) with virulence to the majority of the world’s wheat (Triticum aestivum L.) varieties has spread from Uganda throughout eastern and southern Africa, Yemen, and Iran. The identification and spread of vari...

  7. "I'm New Here..." Making Friends, Staying Strong and Having a Fantastic First Year as a School Librarian

    ERIC Educational Resources Information Center

    Stenzel, Carolyn

    2015-01-01

    Carolyn Stenzel is the Library Department chair and Upper School librarian at the Holton-Arms School in Bethesda, Maryland. She is a member of AASL and is the Independent Schools Committee Chair for the Virginia Association of School Librarians. She was awarded the AASL Frances Henne Award in 2014. In this article she shares her experiences as a…

  8. Complex polycyclic scaffolds by metathesis rearrangement of Himbert arene/allene cycloadducts.

    PubMed

    Lam, Jonathan K; Schmidt, Yvonne; Vanderwal, Christopher D

    2012-11-01

    The intramolecular arene/allene cycloaddition first described 30 years ago by Himbert and Henn permits rapid access to strained polycyclic compounds. Alkene metathesis processes cleanly rearrange appropriately substituted cycloadducts into complex, functional-group-rich polycyclic lactams of potential utility for natural product synthesis and medicinal chemistry. PMID:23067058

  9. Resistance to recombinant stem rust race TPPKC in hard red spring wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The wheat (Triticum aestivum L.) stem rust (Puccinia graminis Pers.:Pers. f.sp. tritici Eriks. and Henn.) resistance gene SrWld1 conditions resistance to all North American stem rust races and is an important gene in hard red spring (HRS) wheat cultivars. A recombinant wheat stem rust race having ...

  10. Conference Proceedings of the International Association of School Librarianship.

    ERIC Educational Resources Information Center

    International Association of School Librarianship, Kalamazoo, MI.

    The 1976 International Association of School Librarianship conference focused on crucial issues in school library development and professional education. Complete texts of the keynote address, Crucial Issues in School Library Development and Professional Education by Frances Henne, and the following presentations are included: The School…

  11. Characterization of stem rust resistance in wheat cultivar 'Gage'

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat (Triticum spp.) stem rust, caused by Puccinia graminis f. sp. tritici Eriks. & E. Henn. (Pgt), re-emerged as a devastating disease of wheat because of virulent race Ug99 (TTKSK). Many bread wheat (T. aestivum L.) cultivars grown in North America are susceptible to Ug99 or its derivative races ...

  12. Longevity of Puccinia horiana teliospores under various environmental conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Puccinia horiana Henn. is a quarantine-significant fungal pathogen and causal agent of chrysanthemum white rust (CWR). The pathogen and disease were first discovered in the United States in 1977 and quickly eradicated. During the early 1990s, CWR re-emerged on several instances, but in each instance...

  13. Evidence for systemic infection by Puccinia horiana, causal agent of Chrysanthemum White Rust, in Chrysanthemum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    PUCCINIA HORIANA Henn., causal agent of the disease commonly known as Chrysanthemum white rust, is a quarantine-significant fungal pathogen of chrysanthemum in the United States (U.S.) and indigenous to Asia. The pathogen was believed to have been eradicated in the U.S. but recently re-appeared on s...

  14. Microsatellite markers linked to stem rust resistance allele Sr9a in wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Stem rust of wheat, caused by Puccinia graminis Pers.: Pers. f.sp. tritici Eriks. & E Henn., is one of the most serious diseases of wheat worldwide. Host resistance is more effective and durable when several stem rust resistance (Sr) genes are pyramided into a single genotype, a process that can be ...

  15. Health Instruction Packages: Consumer--Nutrition and Health.

    ERIC Educational Resources Information Center

    Henn, Lisa; And Others

    These eight learning modules provide text, illustrations, and exercises on a variety of nutritional and dietetic topics. The first two modules were prepared by Lisa Henn to instruct older adults in the various food sources of caffeine and fiber and in the harmful effects of caffeine and the dietetic importance of fiber. The third module was…

  16. Development of COS-SNP and HRM markers for cost efficient and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Leaf rust (Puccinia triticina Eriks. & Henn.) is a major disease affecting durum wheat production. The Lr14a leaf rust resistant gene present in the durum wheat cv. Creso and its derivative Colosseo is one of the best characterized leaf rust resistance sources presently deployed in durum wheat breed...

  17. Development of a Set of Stem Rust Susceptible D-Genome Disomic Substitutions Based on Rusty durum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Stem rust (Puccinia graminis Pers.:Pers. f.sp. tritici Eriks. and Henn.) is one of the most devastating diseases of wheat (Triticum aestivum L.) and durum (T. turgidum L. ssp. durum). Prior to the development of molecular techniques, studies of genes for stem rust resistance genes in wheat were com...

  18. Molecular and cytogenetic characterization of wheat introgression lines carrying the stem rust resistance gene Sr39.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Stem rust, caused by Puccinia graminis Pers.:Pers. f.sp. tritici Eriks. and Henn., poses a serious threat to global wheat production because of the emergence of Pgt-TTKSK (Ug99). The TTKSK resistant gene Sr39 was derived from Aegilops speltoides through chromosome translocation. In this study, we ch...

  19. A new 2DS·2RL Robertsonian translocation transfers Sr59 resistance to stem rust into wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Emerging new races of the wheat stem rust pathogen Puccinia graminis f. sp. tritici Eriks. & E. Henn, especially the Ug99 race group threaten global wheat, Triticum aestivum L., production. Screening of a collection of wheat-rye, Secale cereale L., chromosome substitution lines developed at the Swed...

  20. On the stability of cationic complexes of neon with helium--solving an experimental discrepancy.

    PubMed

    Bartl, Peter; Denifl, Stephan; Scheier, Paul; Echt, Olof

    2013-10-21

    Helium nanodroplets are doped with neon and ionized by electrons. The size-dependence of the ion abundance of HenNex(+), identified in high-resolution mass spectra, is deduced for complexes containing up to seven neon atoms and dozens of helium atoms. Particularly stable ions are inferred from anomalies in the abundance distributions. Two pronounced anomalies at n = 11 and 13 in the HenNe(+) series confirm drift-tube data reported by Kojima et al. [T. M. Kojima et al., Z. Phys. D, 1992, 22, 645]. The discrepancy with previously published spectra of neon-doped helium droplets, which did not reveal any abundance anomalies [T. Ruchti et al., J. Chem. Phys., 1998, 109, 10679-10687; C. A. Brindle et al., J. Chem. Phys., 2005, 123, 064312], is most likely due to limited mass resolution, which precluded unambiguous analysis of contributions from different ions with identical nominal mass. However, calculated dissociation energies of HenNe(+) reported so far do not correlate with the present data, possibly because of challenges in correctly treating the linear, asymmetric [He-Ne-He](+) ionic core in HenNe(+). Anomalies identified in the distributions of HenNex(+) for x > 1, including prominent ones at He12Ne2(+) and He14Ne2(+), may help to better understand solvation of Ne(+) and Nex(+) in helium. PMID:23958826

  1. Structure of 10He low-lying states uncovered by correlations.

    PubMed

    Sidorchuk, S I; Bezbakh, A A; Chudoba, V; Egorova, I A; Fomichev, A S; Golovkov, M S; Gorshkov, A V; Gorshkov, V A; Grigorenko, L V; Jalůvková, P; Kaminski, G; Krupko, S A; Kuzmin, E A; Nikolskii, E Yu; Oganessian, Yu Ts; Parfenova, Yu L; Sharov, P G; Slepnev, R S; Stepantsov, S V; Ter-Akopian, G M; Wolski, R; Yukhimchuk, A A; Filchagin, S V; Kirdyashkin, A A; Maksimkin, I P; Vikhlyantsev, O P

    2012-05-18

    The 0+ ground state of the 10He nucleus produced in the 3H(8He,p)10He reaction was found at about 2.1±0.2  MeV (Γ∼2  MeV) above the three-body ^{8}He+n+n breakup threshold. Angular correlations observed for ^{10}He decay products show prominent interference patterns allowing us to draw conclusions about the structure of low-energy excited states. We interpret the observed correlations as a coherent superposition of a broad 1- state having a maximum at energy 4-6 MeV and a 2+ state above 6 MeV, setting both on top of the 0+ state "tail." This anomalous level ordering indicates that the breakdown of the N=8 shell known in 12Be thus extends also to the ^{10}He system. PMID:23003144

  2. Beyond Depression: Towards a Process-Based Approach to Research, Diagnosis, and Treatment

    PubMed Central

    Forgeard, Marie J. C.; Haigh, Emily A. P.; Beck, Aaron T.; Davidson, Richard J.; Henn, Fritz A.; Maier, Steven F.; Mayberg, Helen S.; Seligman, Martin E. P.

    2012-01-01

    Despite decades of research on the etiology and treatment of depression, a significant proportion of the population is affected by the disorder, fails to respond to treatment and is plagued by relapse. Six prominent scientists, Aaron Beck, Richard Davidson, Fritz Henn, Steven Maier, Helen Mayberg, and Martin Seligman, gathered to discuss the current state of scientific knowledge on depression, and in particular on the basic neurobiological and psychopathological processes at play in the disorder. These general themes were addressed: 1) the relevance of learned helplessness as a basic process involved in the development of depression; 2) the limitations of our current taxonomy of psychological disorders; 3) the need to work towards a psychobiological process-based taxonomy; and 4) the clinical implications of implementing such a process-based taxonomy. PMID:22509072

  3. Some Characteristics of a Lipase Preparation from the Uredospores of Puccinia graminis tritici1

    PubMed Central

    Knoche, H. W.; Horner, Teresa L.

    1970-01-01

    The characteristics of a lipase preparation from the uredospores of Puccinia graminis (pers.) f. sp. tritici (Eriks. and Henn.) have been investigated. The majority of the lipolytic activity in disrupted uredospores was found to be associated with a lipid-containing, particulate fraction which sedimented at 5000g. With triolein as a substrate, both 1,3- and 1,2-diglycerides were formed. Ethylenediaminetetraacetate, p-chloromercuribenzoic acid, and Hg2+ strongly inhibited the activity. A pH optimum of 6.7 was observed. The sensitivity of the preparation to higher temperatures was indicated by a complete loss of activity when the preparation was preincubated at 25 C or above for 30 minutes. A temperature optimum of 15 C for the enzyme is strikingly similar to the temperature optimum for germination of the uredospores. The possible relationship between the sensitivity of the enzyme and the germination process is discussed. PMID:16657474

  4. C60 + in Diffuse Clouds: Laboratory and Astronomical Comparison

    NASA Astrophysics Data System (ADS)

    Campbell, E. K.; Holz, M.; Maier, J. P.

    2016-07-01

    The wavelengths of the strongest absorptions in the electronic spectrum of {{{C}}}60+ have been determined by experimental investigation into the perturbation caused by the helium in the laboratory spectra of {{{C}}}60+-{{{He}}}n(n=1{--}3). The extrapolation of these gives absorption bands of bare {{{C}}}60+ at 9348.4, 9365.2, 9427.8, 9577.0, and 9632.1 Å, with ±0.2 Å as the 2σ uncertainty. The laboratory data are compared with the complete set of astronomical observations reported in the literature. The spectral characteristics are found to be in agreement with five diffuse interstellar bands, for which the systematic uncertainties are larger than for the laboratory data.

  5. Protein Expression Profile of an Environmentally Important Bacterial Strain: the Chromate Response of Arthrobacter Species Strain FB24

    SciTech Connect

    Henne, Kristene L.; Turse, Joshua E.; Nakatsu, C. H.; Konopka, Allan

    2011-05-03

    The global proteomic response of Arthrobacter sp. strain FB24 to different levels of chromate stress was evaluated with both two-dimensional gel electrophoresis (2-DGE) and liquid chromatography coupled to tandem mass spectrometry (LC/LC-MS/MS) [Henne et al. 2009b]. Proteome coverage of 22% and 71% was obtained with 2-DGE and LC/LC-MS/MS, respectively. The strong response of strain FB24 to chromate suggests a condition of sulfur limitation, which could be driven by competition for the sulfate transporter by the structurally similar chromate ion. Additionally, the involvement of genes hypothesized to be directly involved in chromate resistance in strain FB24 was supported at the protein level.

  6. Beyond Depression: Towards a Process-Based Approach to Research, Diagnosis, and Treatment.

    PubMed

    Forgeard, Marie J C; Haigh, Emily A P; Beck, Aaron T; Davidson, Richard J; Henn, Fritz A; Maier, Steven F; Mayberg, Helen S; Seligman, Martin E P

    2011-12-01

    Despite decades of research on the etiology and treatment of depression, a significant proportion of the population is affected by the disorder, fails to respond to treatment and is plagued by relapse. Six prominent scientists, Aaron Beck, Richard Davidson, Fritz Henn, Steven Maier, Helen Mayberg, and Martin Seligman, gathered to discuss the current state of scientific knowledge on depression, and in particular on the basic neurobiological and psychopathological processes at play in the disorder. These general themes were addressed: 1) the relevance of learned helplessness as a basic process involved in the development of depression; 2) the limitations of our current taxonomy of psychological disorders; 3) the need to work towards a psychobiological process-based taxonomy; and 4) the clinical implications of implementing such a process-based taxonomy. PMID:22509072

  7. Adequate bases of phase space master integrals for gg → h at NNLO and beyond

    NASA Astrophysics Data System (ADS)

    Höschele, Maik; Hoff, Jens; Ueda, Takahiro

    2014-09-01

    We study master integrals needed to compute the Higgs boson production cross section via gluon fusion in the infinite top quark mass limit, using a canonical form of differential equations for master integrals, recently identified by Henn, which makes their solution possible in a straightforward algebraic way. We apply the known criteria to derive such a suitable basis for all the phase space master integrals in afore mentioned process at next-to-next-to-leading order in QCD and demonstrate that the method is applicable to next-to-next-to-next-to-leading order as well by solving a non-planar topology. Furthermore, we discuss in great detail how to find an adequate basis using practical examples. Special emphasis is devoted to master integrals which are coupled by their differential equations.

  8. A comparison of design variables for control theory based airfoil optimization

    NASA Technical Reports Server (NTRS)

    Reuther, James; Jameson, Antony

    1995-01-01

    This paper describes the implementation of optimization techniques based on control theory for airfoil design. In our previous work in the area it was shown that control theory could be employed to devise effective optimization procedures for two-dimensional profiles by using either the potential flow or the Euler equations with either a conformal mapping or a general coordinate system. We have also explored three-dimensional extensions of these formulations recently. The goal of our present work is to demonstrate the versatility of the control theory approach by designing airfoils using both Hicks-Henne functions and B-spline control points as design variables. The research also demonstrates that the parameterization of the design space is an open question in aerodynamic design.

  9. Resonances and continuum states of drip-line nuclei using the complex scaling method

    NASA Astrophysics Data System (ADS)

    Myo, Takayuki; Katō, Kiyoshi

    2011-09-01

    Resonances and continuum states of He isotopes are investigated using the cluster orbital shell model (COSM) with the complex scaling method (CSM). We discuss the following subjects: 1) Spectroscopic factors of the unbound nucleus 7He into the 6He-n components and their relation to the one-neutron removal strengths of 7He. The importance of the 6He(2+) resonance is shown. 2) Structure of five-body 0+ resonance of 8He from the viewpoint of the two-neutron pair coupling. The monopole strengths into five-body unbound states are also investigated. It is found that the sequential breakup process of 8He → 7He+n → 6He+n+n is dominant in the monopole excitation, while the contribution of 8He(0+2) is negligible.

  10. The Two-Loop Six-Point MHV Amplitude in Maximally Supersymmetric Yang-Mills Theory

    SciTech Connect

    Bern, Z.; Dixon, L.J.; Kosower, D.A.; Roiban, R.; Spradlin, M.; Vergu, C.; Volovich, A.

    2008-03-12

    We give a representation of the parity-even part of the planar two-loop six-gluon MHV amplitude of N = 4 super-Yang-Mills theory, in terms of loop-momentum integrals with simple dual conformal properties. We evaluate the integrals numerically in order to test directly the ABDK/BDS all-loop ansatz for planar MHV amplitudes. We find that the ansatz requires an additive remainder function, in accord with previous indications from strong-coupling and Regge limits. The planar six-gluon amplitude can also be compared with the hexagonal Wilson loop computed by Drummond, Henn, Korchemsky and Sokatchev in arXiv:0803.1466 [hep-th]. After accounting for differing singularities and other constants independent of the kinematics, we find that the Wilson loop and MHV-amplitude remainders are identical, to within our numerical precision. This result provides non-trivial confirmation of a proposed n-point equivalence between Wilson loops and planar MHV amplitudes, and suggests that an additional mechanism besides dual conformal symmetry fixes their form at six points and beyond.

  11. Three-cluster dynamics within an ab initio framework

    DOE PAGESBeta

    Quaglioni, Sofia; Romero-Redondo, Carolina; Navratil, Petr

    2013-09-26

    In this study, we introduce a fully antisymmetrized treatment of three-cluster dynamics within the ab initio framework of the no-core shell model/resonating-group method. Energy-independent nonlocal interactions among the three nuclear fragments are obtained from realistic nucleon-nucleon interactions and consistent ab initio many-body wave functions of the clusters. The three-cluster Schrödinger equation is solved with bound-state boundary conditions by means of the hyperspherical-harmonic method on a Lagrange mesh. We discuss the formalism in detail and give algebraic expressions for systems of two single nucleons plus a nucleus. Using a soft similarity-renormalization-group evolved chiral nucleon-nucleon potential, we apply the method to amore » 4He+n+n description of 6He and compare the results to experiment and to a six-body diagonalization of the Hamiltonian performed within the harmonic-oscillator expansions of the no-core shell model. Differences between the two calculations provide a measure of core (4He) polarization effects.« less

  12. Antifungal Activities of Crude Extractum from Camellia semiserrata Chi (Nanshancha) Seed Cake Against Colletotrichum musae, Colletotrichum gloeosporioides and Penicillium italicum in vitro and in vivo Fruit Test.

    PubMed

    Meng, Xiangchun; Li, Jun; Bi, Fangcheng; Zhu, Lixue; Ma, Zhiyu

    2015-12-01

    Antifungal activities of crude extractum of Nanshancha Seed Cake (NSC), to inactivate postharvest pathogens were investigated. Highest inhibitory rate was found against C. musae, C. gloeosporioides and C. papaya P.Henn, which was much stronger than that by tea saponin. Compared to tea saponin, effects of NSC extractum was relatively weak and similar on C. gloeosporioides Penzig and P. italicum. In an in vivo study, best controlling effects by NSC extractum was found with banana anthracnose disease development, which showed no inhibitory effects by tea saponin. NSC extractum controlled in vitro C. musae growth through directly inhibiting germination rate and germ tube elongation, and causing distortation, rupture and indentation of C. musae mycelium. In banana fruit subject to C. musae inoculation, higher PAL, POD, GLU and CHT activity was observed in banana fruit treated with crude NSC extractum than that of water control fruits. Current study proved the best controlling effects of crude NSC extractum in C. musae in vitro and in vivo development, which through direct inhibition of C. musae growth and increasing defense system of the banana fruit. PMID:26674222

  13. Using a shock control bump to improve the performance of an axial compressor blade section

    NASA Astrophysics Data System (ADS)

    Mazaheri, K.; Khatibirad, S.

    2016-07-01

    Here, we use numerical analysis to study the effects of a shock control bump (SCB) on the performance of a transonic axial compressor blade section and to optimize its shape and location to improve the compressor performance. A section of the NASA rotor 67 blade is used for this study. Two Bézier curves, each consisting of seven control points, are used to model the suction and pressure surfaces of the blade section. The SCB is modeled with the Hicks-Henne function and, using five design parameters, is added to the suction side. The total pressure loss through a cascade of blade sections is selected as the cost function. A continuous adjoint optimization method is used along with a RANS solver to find a new blade section shape. A grid independence study is performed, and all optimization and flow solver algorithms are validated. Two single-point optimizations are performed in the design condition and in an off-design condition. It is shown that both optimized shapes have overall better performance for both on-design and off-design conditions. An analysis is given regarding how the SCB has changed the wave structure between blade sections resulting in a more favorable flow pattern.

  14. Near-infrared spectroscopy (NIRS) as a diagnostic tool in patients with suspected stroke or traumatic brain injury

    NASA Astrophysics Data System (ADS)

    Goldberg, Sonja; Lott, Carsten; Ostermeyer, M.; Hennes, Hans-Juergen

    2001-10-01

    Near-Infrared Spectroscopy (NIRS) as a diagnostic tool in patients with suspected stroke or brain injury S. Goldberg, C. Lott, M. Ostermeyer, H.-J. Hennes Absorption of Near-Infrared (NIR) light in the brain is mainly caused by hemoglobin. Superficial intracranial hematoma with a higher concentration of hemoglobin causes a higher absorption in NIRS. The existence of hemorrhage can be demonstrated by the difference of optical density, comparing identical measuring points at both hemispheres of the brain: absorption of NIR light is greater at the side of the hemorrhage, causing less reflection in NIRS. In a prospective, blinded study, 100 patients who were scheduled for CCT-scan for brain injury or symptoms of stroke have been measured by NIRS. The measurement results were proved by the CCT-diagnosis. A sensitivity of the NIR measurement of 65% and a specificity of 87% was achieved including all patients with any pathology, whereas the subgroup of 58 patients with suspected superficial hematoma and without other pathology showed pathologic findings by NIRS in all of 16 patients indicating superficial bleeding by CCT, pathology could be excluded by NIRS and CCT in 41 patients, one false positive and no false negative result. The results (sensitivity 98%, specificity 100%) support the hypothesis that NIRS is a reliable device for the detection of superficial intracranial hematoma.

  15. Antifungal Activities of Crude Extractum from Camellia semiserrata Chi (Nanshancha) Seed Cake Against Colletotrichum musae, Colletotrichum gloeosporioides and Penicillium italicum in vitro and in vivo Fruit Test

    PubMed Central

    Meng, Xiangchun; Li, Jun; Bi, Fangcheng; Zhu, Lixue; Ma, Zhiyu

    2015-01-01

    Antifungal activities of crude extractum of Nanshancha Seed Cake (NSC), to inactivate postharvest pathogens were investigated. Highest inhibitory rate was found against C. musae, C. gloeosporioides and C. papaya P.Henn, which was much stronger than that by tea saponin. Compared to tea saponin, effects of NSC extractum was relatively weak and similar on C. gloeosporioides Penzig and P. italicum. In an in vivo study, best controlling effects by NSC extractum was found with banana anthracnose disease development, which showed no inhibitory effects by tea saponin. NSC extractum controlled in vitro C. musae growth through directly inhibiting germination rate and germ tube elongation, and causing distortation, rupture and indentation of C. musae mycelium. In banana fruit subject to C. musae inoculation, higher PAL, POD, GLU and CHT activity was observed in banana fruit treated with crude NSC extractum than that of water control fruits. Current study proved the best controlling effects of crude NSC extractum in C. musae in vitro and in vivo development, which through direct inhibition of C. musae growth and increasing defense system of the banana fruit. PMID:26674222

  16. Massachusetts high court supports use of civil rights law to bar blockades.

    PubMed

    1994-04-15

    In a 4-3 opinion issued on April 11, the Supreme Judicial Court of the Commonwealth of Massachusetts affirmed a lower court order preventing anti-choice activists from blocking access to a facility providing abortion counseling or services. Granted under the Massachusetts Civil Rights Act, the injunction also prohibits using force against anyone entering, leaving, or working at such a location (see RFN II/22). Several health care providers and pro-choice organizations obtained a preliminary injunction in 1989 against trespassing or blockading at specific clinics. The following year, the Commonwealth of Massachusetts intervened in the case and was granted a similar statewide order by Superior Court Judge Peter Lauriat. Upholding application of the civil rights statute in this context, the Massachusetts Supreme Judicial Court found that the trial court "properly concluded that the defendants' conduct constituted threats, intimidation, and coercion" of women seeking to exercise their constitutional right to choose abortion. Moreover, the state High Court held that the trial court "did not abuse its discretion in denying disclosure of the identities of the women affected by the defendants' conduct." Anti-choice activists had claimed they needed to question patients to show that blockades--not threats, intimidation, or coercion--caused them to delay their abortion procedures. Congratulations to John Henn of Foley, Hoag and Eliot of Boston, who represented plaintiffs in Planned Parenthood League of Massachusetts v. Blake. CRLP's Janet Benshoof, Catherine Albisa, and Priscilla Smith filed an amicus brief in the case (see RFN II/22). PMID:12318701

  17. The genus Cladosporium

    PubMed Central

    Bensch, K.; Braun, U.; Groenewald, J.Z.; Crous, P.W.

    2012-01-01

    A monographic revision of the hyphomycete genus Cladosporium s. lat. (Cladosporiaceae, Capnodiales) is presented. It includes a detailed historic overview of Cladosporium and allied genera, with notes on their phylogeny, systematics and ecology. True species of Cladosporium s. str. (anamorphs of Davidiella), are characterised by having coronate conidiogenous loci and conidial hila, i.e., with a convex central dome surrounded by a raised periclinal rim. Recognised species are treated and illustrated with line drawings and photomicrographs (light as well as scanning electron microscopy). Species known from culture are described in vivo as well as in vitro on standardised media and under controlled conditions. Details on host range/substrates and the geographic distribution are given based on published accounts, and a re-examination of numerous herbarium specimens. Various keys are provided to support the identification of Cladosporium species in vivo and in vitro. Morphological datasets are supplemented by DNA barcodes (nuclear ribosomal RNA gene operon, including the internal transcribed spacer regions ITS1 and ITS2, the 5.8S nrDNA, as well as partial actin and translation elongation factor 1-α gene sequences) diagnostic for individual species. In total 993 names assigned to Cladosporium s. lat., including Heterosporium (854 in Cladosporium and 139 in Heterosporium), are treated, of which 169 are recognized in Cladosporium s. str. The other taxa are doubtful, insufficiently known or have been excluded from Cladosporium in its current circumscription and re-allocated to other genera by the authors of this monograph or previous authors. Taxonomic novelties: Cladosporium allicinum (Fr.: Fr.) Bensch, U. Braun & Crous, comb. nov., C. astroideum var. catalinense U. Braun, var. nov., Fusicladium tectonicola (Yong H. He & Z.Y. Zhang) U. Braun & Bensch, comb. nov., Septoidium uleanum (Henn.) U. Braun, comb. nov., Zasmidium adeniae (Hansf.) U. Braun, comb. nov., Zasmidium

  18. Cytochrome b gene structure and consequences for resistance to Qo inhibitor fungicides in plant pathogens.

    PubMed

    Grasso, Valeria; Palermo, Simona; Sierotzki, Helge; Garibaldi, Angelo; Gisi, Ulrich

    2006-06-01

    The cytochrome b (cyt b) gene structure was characterized for different agronomically important plant pathogens, such as Puccinia recondita f sp tritici (Erikss) CO Johnston, P graminis f sp tritici Erikss and Hennings, P striiformis f sp tritici Erikss, P coronata f sp avenae P Syd & Syd, P hordei GH Otth, P recondita f sp secalis Roberge, P sorghi Schwein, P horiana Henn, Uromyces appendiculatus (Pers) Unger, Phakopsora pachyrhizi Syd & P Syd, Hemileia vastatrix Berk & Broome, Alternaria solani Sorauer, A alternata (Fr) Keissl and Plasmopara viticola (Berk & Curt) Berlese & de Toni. The sequenced fragment included the two hot spot regions in which mutations conferring resistance to QoI fungicides may occur. The cyt b gene structure of these pathogens was compared with that of other species from public databases, including the strobilurin-producing fungus Mycena galopoda (Pers) P Kumm, Saccharomyces cerevisiae Meyer ex Hansen, Venturia inaequalis (Cooke) Winter and Mycosphaerella fijiensis Morelet. In all rust species, as well as in A solani, resistance to QoI fungicides caused by the mutation G143A has never been reported. A type I intron was observed directly after the codon for glycine at position 143 in these species. This intron was absent in pathogens such as A alternata, Blumeria graminis (DC) Speer, Pyricularia grisea Sacc, Mycosphaerella graminicola (Fuckel) J Schröt, M fijiensis, V inaequalis and P viticola, in which resistance to QoI fungicides has occurred and the glycine is replaced by alanine at position 143 in the resistant genotype. The present authors predict that a nucleotide substitution in codon 143 would prevent splicing of the intron, leading to a deficient cytochrome b, which is lethal. As a consequence, the evolution of resistance to QoI fungicides based on G143A is not likely to evolve in pathogens carrying an intron directly after this codon. PMID:16688790

  19. Development and characterization of a compensating wheat-Thinopyrum intermedium Robertsonian translocation with Sr44 resistance to stem rust (Ug99).

    PubMed

    Liu, Wenxuan; Danilova, Tatiana V; Rouse, Matthew N; Bowden, Robert L; Friebe, Bernd; Gill, Bikram S; Pumphrey, Michael O

    2013-05-01

    The emergence of the highly virulent Ug99 race complex of the stem rust fungus (Puccinia graminis Pers. f. sp. tritici Eriks. and Henn.) threatens wheat (Triticum aestivum L.) production worldwide. One of the effective genes against the Ug99 race complex is Sr44, which was derived from Thinopyrum intermedium (Host) Barkworth and D.R. Dewey and mapped to the short arm of 7J (designated 7J#1S) present in the noncompensating T7DS-7J#1L∙7J#1S translocation. Noncompensating wheat-alien translocations are known to cause genomic duplications and deficiencies leading to poor agronomic performance, precluding their direct use in wheat improvement. The present study was initiated to produce compensating wheat-Th. intermedium Robertsonian translocations with Sr44 resistance. One compensating RobT was identified consisting of the wheat 7DL arm translocated to the Th. intermedium 7J#1S arm resulting in T7DL∙7J#1S. The T7DL∙7J#1S stock was designated as TA5657. The 7DL∙7J#1S stock carries Sr44 and has resistance to the Ug99 race complex. This compensating RobT with Sr44 resistance may be useful in wheat improvement. In addition, we identified an unnamed stem rust resistance gene located on the 7J#1L arm that confers resistance not only to Ug99, but also to race TRTTF, which is virulent to Sr44. However, the action of the second gene can be modified by the presence of suppressors in the recipient wheat cultivars. PMID:23358862

  20. Resistance to recombinant stem rust race TPPKC in hard red spring wheat.

    PubMed

    Klindworth, D L; Miller, J D; Williams, N D; Xu, S S

    2011-08-01

    The wheat (Triticum aestivum L.) stem rust (Puccinia graminis Pers.:Pers. f.sp. tritici Eriks. and Henn.) resistance gene SrWld1 conditions resistance to all North American stem rust races and is an important gene in hard red spring (HRS) wheat cultivars. A sexually recombined race having virulence to SrWld1 was isolated in the 1980s. Our objective was to determine the genetics of resistance to the race. The recombinant race was tested with the set of stem rust differentials and with a set of 36 HRS and 6 durum cultivars. Chromosomal location studies in cultivars Len, Coteau, and Stoa were completed using aneuploid analysis, molecular markers, and allelism tests. Stem rust differential tests coded the race as TPPKC, indicating it differed from TPMKC by having added virulence on Sr30 as well as SrWld1. Genes effective against TPPKC were Sr6, Sr9a, Sr9b, Sr13, Sr24, Sr31, and Sr38. Genetic studies of resistance to TPPKC indicated that Len, Coteau, and Stoa likely carried Sr9b, that Coteau and Stoa carried Sr6, and Stoa carried Sr24. Tests of HRS and durum cultivars indicated that five HRS and one durum cultivar were susceptible to TPPKC. Susceptible HRS cultivars were postulated to have SrWld1 as their major stem rust resistance gene. Divide, the susceptible durum cultivar, was postulated to lack Sr13. We concluded that although TPPKC does not constitute a threat similar to TTKSK and its variants, some cultivars would be lost from production if TPPKC became established in the field. PMID:21573955

  1. Identification of New Resistance Loci to African Stem Rust Race TTKSK in Tetraploid Wheats Based on Linkage and Genome-Wide Association Mapping.

    PubMed

    Laidò, Giovanni; Panio, Giosuè; Marone, Daniela; Russo, Maria A; Ficco, Donatella B M; Giovanniello, Valentina; Cattivelli, Luigi; Steffenson, Brian; de Vita, Pasquale; Mastrangelo, Anna M

    2015-01-01

    Stem rust, caused by Puccinia graminis Pers. f. sp. tritici Eriks. and E. Henn. (Pgt), is one of the most destructive diseases of wheat. Races of the pathogen in the "Ug99 lineage" are of international concern due to their virulence for widely used stem rust resistance genes and their spread throughout Africa. Disease resistant cultivars provide one of the best means for controlling stem rust. To identify quantitative trait loci (QTL) conferring resistance to African stem rust race TTKSK at the seedling stage, we evaluated an association mapping (AM) panel consisting of 230 tetraploid wheat accessions under greenhouse conditions. A high level of phenotypic variation was observed in response to race TTKSK in the AM panel, allowing for genome-wide association mapping of resistance QTL in wild, landrace, and cultivated tetraploid wheats. Thirty-five resistance QTL were identified on all chromosomes, and seventeen are of particular interest as identified by multiple associations. Many of the identified resistance loci were coincident with previously identified rust resistance genes; however, nine on chromosomes 1AL, 2AL, 4AL, 5BL, and 7BS may be novel. To validate AM results, a biparental population of 146 recombinant inbred lines was also considered, which derived from a cross between the resistant cultivar "Cirillo" and susceptible "Neodur." The stem rust resistance of Cirillo was conferred by a single gene on the distal region of chromosome arm 6AL in an interval map coincident with the resistance gene Sr13, and confirmed one of the resistance loci identified by AM. A search for candidate resistance genes was carried out in the regions where QTL were identified, and many of them corresponded to NBS-LRR genes and protein kinases with LRR domains. The results obtained in the present study are of great interest as a high level of genetic variability for resistance to race TTKSK was described in a germplasm panel comprising most of the tetraploid wheat sub-species. PMID

  2. Characterization and Phylogenetic Analysis of the Mitochondrial Genome of Shiraia bambusicola Reveals Special Features in the Order of Pleosporales

    PubMed Central

    Shen, Xiao-Ye; Li, Tong; Chen, Shuang; Fan, Li; Gao, Jian; Hou, Cheng-Lin

    2015-01-01

    Shiraia bambusicola P. Henn. is a pathogenic fungus of bamboo, and its fruiting bodies are regarded as folk medicine. We determined and analyzed its complete mitochondrial DNA sequence (circular DNA molecule of 39,030 bp, G + C content of 25.19%). It contains the typical genes encoding proteins involved in electron transport and coupled oxidative phosphorylation (nad1-6 and nad4L, cob and cox1-3), one ATP synthase subunit (atp6), 4 hypothetical proteins, and two genes for large and small rRNAs (rnl and rns). There is a set of 32 tRNA genes comprising all 20 amino acids, and these genes are evenly distributed on the two strands. Phylogenetic analyses based on concatenated mitochondrial proteins indicated that S. bambusicola clustered with members of the order Pleosporales, which is in agreement with previous results. The gene arrangements of Dothideomycetes species contained three regions of gene orders partitioned in their mitochondrial genomes, including block 1 (nad6-atp6), block 2 (nad1-cox3) and block 3 (genes around rns). S. bambusicola displayed unique special features that differed from the other Pleosporales species, especially in the coding regions around rns (trnR-trnY). Moreover, a comparison of gene orders in mitochondrial genomes from Pezizomycotina revealed that although all encoded regions are located on the same strand in most Pezizomycotina mtDNAs, genes from Dothideomycetes species had different orientations, as well as diverse positions and colocalization of genes (such as cox3, cox1-cox2 and nad2–nad3); these distinctions were regarded as class-specific features. Interestingly, two incomplete copies of the atp6 gene were found on different strands of the mitogenomic DNA, a finding that has not been observed in the other analyzed fungal species. In our study, mitochondrial genomes from Dothideomycetes species were comprehensively analyzed for the first time, including many species that have not appeared in previous reports. PMID:25790308

  3. Aerodynamic shape optimization using control theory

    NASA Technical Reports Server (NTRS)

    Reuther, James

    1996-01-01

    Aerodynamic shape design has long persisted as a difficult scientific challenge due its highly nonlinear flow physics and daunting geometric complexity. However, with the emergence of Computational Fluid Dynamics (CFD) it has become possible to make accurate predictions of flows which are not dominated by viscous effects. It is thus worthwhile to explore the extension of CFD methods for flow analysis to the treatment of aerodynamic shape design. Two new aerodynamic shape design methods are developed which combine existing CFD technology, optimal control theory, and numerical optimization techniques. Flow analysis methods for the potential flow equation and the Euler equations form the basis of the two respective design methods. In each case, optimal control theory is used to derive the adjoint differential equations, the solution of which provides the necessary gradient information to a numerical optimization method much more efficiently then by conventional finite differencing. Each technique uses a quasi-Newton numerical optimization algorithm to drive an aerodynamic objective function toward a minimum. An analytic grid perturbation method is developed to modify body fitted meshes to accommodate shape changes during the design process. Both Hicks-Henne perturbation functions and B-spline control points are explored as suitable design variables. The new methods prove to be computationally efficient and robust, and can be used for practical airfoil design including geometric and aerodynamic constraints. Objective functions are chosen to allow both inverse design to a target pressure distribution and wave drag minimization. Several design cases are presented for each method illustrating its practicality and efficiency. These include non-lifting and lifting airfoils operating at both subsonic and transonic conditions.

  4. The Colletotrichum acutatum species complex

    PubMed Central

    Damm, U.; Cannon, P.F.; Woudenberg, J.H.C.; Crous, P.W.

    2012-01-01

    . orchidophilum Damm, P.F. Cannon & Crous, C. paxtonii Damm, P.F. Cannon & Crous, C. pseudoacutatum Damm, P.F. Cannon & Crous C. pyricola Damm, P.F. Cannon & Crous, C. rhombiforme Damm, P.F. Cannon & Crous, C. scovillei Damm, P.F. Cannon & Crous, C. sloanei Damm, P.F. Cannon & Crous, C. tamarilloi Damm, P.F. Cannon & Crous, C. walleri Damm, P.F. Cannon & Crous. Typifications: Epitypifications - C. acutatum J.H. Simmonds, C. limetticola (R.E. Clausen) Damm, P.F. Cannon & Crous, C. nymphaeae (Pass.) Aa, C. phormii (Henn.) D.F. Farr & Rossman, C. salicis (Fuckel) Damm, P.F. Cannon & Crous. Lectotypifications - C. nymphaeae (Pass.) Aa, C. orchidearum Allesch. PMID:23136458

  5. A novel Robertsonian translocation event leads to transfer of a stem rust resistance gene (Sr52) effective against race Ug99 from Dasypyrum villosum into bread wheat.

    PubMed

    Qi, L L; Pumphrey, M O; Friebe, Bernd; Zhang, P; Qian, C; Bowden, R L; Rouse, M N; Jin, Y; Gill, B S

    2011-06-01

    Stem rust (Puccinia graminis f. sp. tritici Eriks. & E. Henn.) (the causal agent of wheat stem rust) race Ug99 (also designated TTKSK) and its derivatives have defeated several important stem rust resistance genes widely used in wheat (Triticum aestivum L.) production, rendering much of the worldwide wheat acreage susceptible. In order to identify new resistance sources, a large collection of wheat relatives and genetic stocks maintained at the Wheat Genetic and Genomic Resources Center was screened. The results revealed that most accessions of the diploid relative Dasypyrum villosum (L.) Candargy were highly resistant. The screening of a set of wheat-D. villosum chromosome addition lines revealed that the wheat-D. villosum disomic addition line DA6V#3 was moderately resistant to race Ug99. The objective of the present study was to produce and characterize compensating wheat-D. villosum whole arm Robertsonian translocations (RobTs) involving chromosomes 6D of wheat and 6V#3 of D. villosum through the mechanism of centric breakage-fusion. Seven 6V#3-specific EST-STS markers were developed for screening F(2) progeny derived from plants double-monosomic for chromosomes 6D and 6V#3. Surprisingly, although 6D was the target chromosome, all recovered RobTs involved chromosome 6A implying a novel mechanism for the origin of RobTs. Homozygous translocations (T6AS·6V#3L and T6AL·6V#3S) with good plant vigor and full fertility were selected from F(3) families. A stem rust resistance gene was mapped to the long arm 6V#3L in T6AS·6V#3L and was designated as Sr52. Sr52 is temperature-sensitive and is most effective at 16°C, partially effective at 24°C, and ineffective at 28°C. The T6AS·6V#3L stock is a new source of resistance to Ug99, is cytogenetically stable, and may be useful in wheat improvement. PMID:21437597

  6. Prenatal Arsenic Exposure and Birth Outcomes among a Population Residing near a Mining-Related Superfund Site

    PubMed Central

    Henn, Birgit Claus; Ettinger, Adrienne S.; Hopkins, Marianne R.; Jim, Rebecca; Amarasiriwardena, Chitra; Christiani, David C.; Coull, Brent A.; Bellinger, David C.; Wright, Robert O.

    2016-01-01

    importance. Citation: Claus Henn B, Ettinger AS, Hopkins MR, Jim R, Amarasiriwardena C, Christiani DC, Coull BA, Bellinger DC, Wright RO. 2016. Prenatal arsenic exposure and birth outcomes among a population residing near a mining-related Superfund site. Environ Health Perspect 124:1308–1315; http://dx.doi.org/10.1289/ehp.1510070 PMID:26859631

  7. Genetics and mapping of seedling resistance to Ug99 stem rust in Canadian wheat cultivars 'Peace' and 'AC Cadillac'.

    PubMed

    Hiebert, Colin W; Fetch, Tom G; Zegeye, Taye; Thomas, Julian B; Somers, Daryl J; Humphreys, D Gavin; McCallum, Brent D; Cloutier, Sylvie; Singh, Davinder; Knott, Doug R

    2011-01-01

    Stem rust (caused by Puccinia graminis Pers.:Pers. f. sp. tritici Eriks. & E. Henn.) has re-emerged as a threat to wheat production with the evolution of new pathogen races, namely TTKSK (Ug99) and its variants, in Africa. Deployment of resistant wheat cultivars has provided long-term control of stem rust. Identification of new resistance genes will contribute to future cultivars with broad resistance to stem rust. The related Canadian cultivars Peace and AC Cadillac show resistance to Ug99 at the seedling stage and in the field. The purpose of this study was to elucidate the inheritance and genetically map resistance to Ug99 in these two cultivars. Two populations were produced, an F(2:3) population from LMPG/AC Cadillac and a doubled haploid (DH) population from RL6071/Peace. Both populations showed segregation at the seedling stage for a single stem rust resistance (Sr) gene, temporarily named SrCad. SrCad was mapped to chromosome 6DS in both populations with microsatellite markers and a marker (FSD_RSA) that is tightly linked to the common bunt resistance gene Bt10. FSD_RSA was the closest marker to SrCad (≈ 1.6 cM). Evaluation of the RL6071/Peace DH population and a second DH population, AC Karma/87E03-S2B1, in Kenya showed that the combination of SrCad and leaf rust resistance gene Lr34 provided a high level of resistance to Ug99-type races in the field, whereas in the absence of Lr34 SrCad conferred moderate resistance. A survey confirmed that SrCad is the basis for all of the seedling resistance to Ug99 in Canadian wheat cultivars. While further study is needed to determine the relationship between SrCad and other Sr genes on chromosome 6DS, SrCad represents a valuable genetic resource for producing stem rust resistant wheat cultivars. PMID:20725713

  8. Identification of New Resistance Loci to African Stem Rust Race TTKSK in Tetraploid Wheats Based on Linkage and Genome-Wide Association Mapping

    PubMed Central

    Laidò, Giovanni; Panio, Giosuè; Marone, Daniela; Russo, Maria A.; Ficco, Donatella B. M.; Giovanniello, Valentina; Cattivelli, Luigi; Steffenson, Brian; de Vita, Pasquale; Mastrangelo, Anna M.

    2015-01-01

    Stem rust, caused by Puccinia graminis Pers. f. sp. tritici Eriks. and E. Henn. (Pgt), is one of the most destructive diseases of wheat. Races of the pathogen in the “Ug99 lineage” are of international concern due to their virulence for widely used stem rust resistance genes and their spread throughout Africa. Disease resistant cultivars provide one of the best means for controlling stem rust. To identify quantitative trait loci (QTL) conferring resistance to African stem rust race TTKSK at the seedling stage, we evaluated an association mapping (AM) panel consisting of 230 tetraploid wheat accessions under greenhouse conditions. A high level of phenotypic variation was observed in response to race TTKSK in the AM panel, allowing for genome-wide association mapping of resistance QTL in wild, landrace, and cultivated tetraploid wheats. Thirty-five resistance QTL were identified on all chromosomes, and seventeen are of particular interest as identified by multiple associations. Many of the identified resistance loci were coincident with previously identified rust resistance genes; however, nine on chromosomes 1AL, 2AL, 4AL, 5BL, and 7BS may be novel. To validate AM results, a biparental population of 146 recombinant inbred lines was also considered, which derived from a cross between the resistant cultivar “Cirillo” and susceptible “Neodur.” The stem rust resistance of Cirillo was conferred by a single gene on the distal region of chromosome arm 6AL in an interval map coincident with the resistance gene Sr13, and confirmed one of the resistance loci identified by AM. A search for candidate resistance genes was carried out in the regions where QTL were identified, and many of them corresponded to NBS-LRR genes and protein kinases with LRR domains. The results obtained in the present study are of great interest as a high level of genetic variability for resistance to race TTKSK was described in a germplasm panel comprising most of the tetraploid wheat sub

  9. The Botryosphaeriaceae: genera and species known from culture

    PubMed Central

    Phillips, A.J.L.; Alves, A.; Abdollahzadeh, J.; Slippers, B.; Wingfield, M.J.; Groenewald, J.Z.; Crous, P.W.

    2013-01-01

    . & A.J.L. Phillips, Lasiodiplodia lignicola (Ariyawansa, J.K. Liu & K.D. Hyde) A.J.L. Phillips, A. Alves & Abdollahz., Neoscytalidium hyalinum (C.K. Campb. & J.L. Mulder) A.J.L. Phillips, Groenewald & Crous, Sphaeropsis citrigena (A.J.L. Phillips, P.R. Johnst. & Pennycook) A.J.L. Phillips & A. Alves, Sphaeropsis eucalypticola (Doilom, J.K. Liu, & K.D. Hyde) A.J.L. Phillips, Sphaeropsis porosa (Van Niekerk & Crous) A.J.L. Phillips & A. Alves. Epitypification (basionym) - Sphaeria sapinea Fries. Neotypifications (basionyms) - Botryodiplodia theobromae Pat., Physalospora agaves Henn, Sphaeria atrovirens var. visci Alb. & Schwein. PMID:24302790

  10. Molecular detection of Puccinia horiana in Chrysanthemum x morifolium through conventional and real-time PCR.

    PubMed

    Alaei, Hossein; Baeyen, Steve; Maes, Martine; Höfte, Monica; Heungens, Kurt

    2009-02-01

    Puccinia horiana Henn. is a quarantine organism and one of the most important fungal pathogens of Chrysanthemum x morifolium cultivars grown for cut flower or potted plant production (florist's chrysanthemum) in several regions of the world. Highly specific primer pairs were identified for conventional, nested, and real-time PCR detection of P. horiana based on the specific and sensitive PCR amplification of selected regions in the internal transcribed spacers (ITS1 and ITS2) of the nuclear ribosomal DNA (rDNA). Using these different PCR versions, 10 pg, 10 fg, and 5 fg genomic DNA could be detected, respectively. When using cloned target DNA as template, the detection limits were 5000, 50, and 5 target copies, respectively. These detection limits were not affected by a background of chrysanthemum plant DNA. The DNA extraction method was optimized to maximize the recoverability of the pathogen from infected plant tissue. A CTAB extraction protocol or a selection of commercial DNA extraction methods allowed the use of 10 ng total (plant+pathogen) DNA without interference of PCR inhibitors. Due to the specificity of the primers, SYBR Green I technology enabled reliable real time PCR signal detection. However, an efficient TaqMan probe is available. The lowest proportion of infected plant material that could still be detected when mixed with healthy plant material was 0.001%. The real-time PCR assay could detect as few as eight pure P. horiana basidiospores, demonstrating the potential of the technique for aerial detection of the pathogen. The amount of P. horiana DNA in plant tissue was determined at various time points after basidiospore inoculation. Using the real-time PCR protocol, it was possible to detect the pathogen immediately after the inoculation period, even though the accumulation of pathogen DNA was most pronounced near the end of the latent period. The detection system proved to be accurate and sensitive and could help not only in pathogen diagnosis but

  11. The climate-isotope relationship of tree-rings at temperate, high-altitude and high-latitude sites

    NASA Astrophysics Data System (ADS)

    Saurer, Matthias; Kress, Anne; Sidorova, Olga; Siegwolf, Rolf

    2010-05-01

    Tree-ring-width and latewood density provide climate information particularly at extreme sites where growth is limited by a single factor. It is not clear, however, if this general principle also holds for stable carbon isotope (δ13C) or oxygen isotope (δ18O) variations. With increasing number of isotope studies and developing isotopic networks (ISONET, MILLENNIUM), the influence of site conditions on the climate-isotope relationship can now be systemically investigated. Our studies with trees growing in Europe and Siberia indicate the following: (1) Significant climate-isotope relationship are found for temperate regions where neither temperature nor precipitation are strongly limiting growth (Saurer et al. 2008) (2) The climate signal does not depend as much on site conditions as it does for tree-ring width and latewood density (3) A particularly strong carbon isotope climate signal reflecting drought is found for an Alpine larch chronology (Kress et al. 2009) (4) Isotopes at high-latitude Siberian sites contain a mixed temperature-precipitation signal (Sidorova et al. 2009). Overall, we can state that stable isotopes in tree-rings provide complimentary information to tree-ring width and density and extend the geographical range as well as the derived climate parameters significantly. Kress, A., Saurer, M., Siegwolf, R.T.W., Frank, D.C., Esper, J. and Bugmann, H.: A 350-year drought reconstruction from Alpine tree-ring stable isotopes. Global Biogeochemical Cycles, in press Saurer, M., Cherubini, P., Reynolds-Henne, C. E., Treydte, K. S., Anderson, W. T., and Siegwolf, R. T. W.: An investigation of the common signal in tree ring stable isotope chronologies at temperate sites, Journal of Geophysical Research-Biogeosciences, 113, 10.1029/2008jg000689, 2008. Sidorova, O. V., Siegwolf, R. T. W., Saurer, M., Naurzbaev, M. M., Shashkin, A. V., and Vaganov, E. A.: Spatial patterns of climatic changes in the Eurasian north reflected in Siberian larch tree

  12. Ames Optimized TCA Configuration

    NASA Technical Reports Server (NTRS)

    Cliff, Susan E.; Reuther, James J.; Hicks, Raymond M.

    1999-01-01

    CPU time limit available on the Cray machines. A typical optimization run using finite difference gradients can use only 30 to 40 design variables and one optimization iteration within the 8 hour queue limit for the chosen grid size and convergence level. The efficiency afforded by the adjoint method allowed for 50-120 design variables and 5-10 optimization iterations in the 8 hour queue. Geometric perturbations to the wing and fuselage were made using the Hicks/Henne (HH) shape functions. The HH functions were distributed uniformly along the chords of the wing defining sections and lofted linearly. During single-surface design, constraints on thickness and volume at selected wing stations were imposed. Both fuselage camber and cross-sectional area distributions were permitted to change during design. The major disadvantage to the use of these functions is the inherent surface waviness produced by repeated use of such functions. Many smoothing operations were required following optimization runs to produce a configuration with reasonable smoothness. Wagner functions were also used on the wing sections but were never used on the fuselage. The Wagner functions are a family of increasingly oscillatory functions that have also been used extensively in airfoil design. The leading and trailing edge regions of the wing were designed by use of polynomial and monomial functions respectively. Twist was attempted but was abandoned because of little performance improvement available from changing the baseline twist.

  13. Frontiers of QC Laser spectroscopy for high precision isotope ratio analysis of greenhouse gases

    NASA Astrophysics Data System (ADS)

    Emmenegger, Lukas; Mohn, Joachim; Harris, Eliza; Eyer, Simon; Ibraim, Erkan; Tuzson, Béla

    2016-04-01

    ., Henne, S. & Emmenegger, L. Tracking isotopic signatures of CO2 at the high altitude site Jungfraujoch with laser spectroscopy: Analytical improvements and representative re-sults. Atmospheric Measurement Techniques 6, 1659-1671 (2013). 2 Tuzson, B. et al. Continuous isotopic composition measurements of tropospheric CO2 at Jungfraujoch (3580 m a.s.l.), Switzerland: real-time observation of regional pollution events. Atmospheric Chemistry and Physics 11, 1685-1696 (2011). 3 Mohn, J. et al. A liquid nitrogen-free preconcentration unit for measurements of ambient N2O isotopomers by QCLAS. Atmospheric Measurement Techniques 3, 609-618 (2010). 4 Wolf, B. et al. First on-line isotopic characterization of N2O above intensively managed grassland. Biogeosciences 12, 2517-1960 (2015). 5 Harris, E. et al. Nitrous oxide and methane emissions and nitrous oxide isotopic composition from waste incineration in Switzerland. Waste Management 35, 135-140 (2015). 6 Harris, E. et al. Isotopic evidence for nitrous oxide production pathways in a partial nitritation-anammox reactor. Water Research 83, 258-270 (2015). 7 Eyer, S. et al. Real-time analysis of δ13C- and δ D-CH4 in ambient air with laser spectroscopy: method development and first intercomparison results. Atmos. Meas. Tech. Discuss. 8, 8925-8970 (2015).

  14. Phylogenetic lineages in Pseudocercospora

    PubMed Central

    Crous, P.W.; Braun, U.; Hunter, G.C.; Wingfield, M.J.; Verkley, G.J.M.; Shin, H.-D.; Nakashima, C.; Groenewald, J.Z.

    2013-01-01

    .S. Salmon & Wormald) Crous, H.D. Shin & U. Braun, Pseudocercospora hakeae (U. Braun & Crous) U. Braun & Crous, Pseudocercospora leucadendri (Cooke) U. Braun & Crous, Pseudocercospora snelliana (Reichert) U. Braun, H.D. Shin, C. Nakash. & Crous, Pseudocercosporella chaenomelis (Y. Suto) C. Nakash., Crous, U. Braun & H.D. Shin; Typifications: Epitypifications - Pseudocercospora angolensis (T. Carvalho & O. Mendes) Crous & U. Braun, Pseudocercospora araliae (Henn.) Deighton, Pseudocercospora cercidis-chinensis H.D. Shin & U. Braun, Pseudocercospora corylopsidis (Togashi & Katsuki) C. Nakash. & Tak. Kobay., Pseudocercospora dovyalidis (Chupp & Doidge) Deighton, Pseudocercospora fukuokaensis (Chupp) X.J. Liu & Y.L. Guo, Pseudocercospora humuli (Hori) Y.L. Guo & X.J. Liu, Pseudocercospora kiggelariae (Syd.) Crous & U. Braun, Pseudocercospora lyoniae (Katsuki & Tak. Kobay.) Deighton, Pseudocercospora lythri H.D. Shin & U. Braun, Pseudocercospora sambucigena U. Braun, Crous & K. Schub., Pseudocercospora stephanandrae (Tak. Kobay. & H. Horie) C. Nakash. & Tak. Kobay., Pseudocercospora viburnigena U. Braun & Crous, Pseudocercosporella chaenomelis (Y. Suto) C. Nakash., Crous, U. Braun & H.D. Shin, Xenostigmina zilleri (A. Funk) Crous; Lectotypification - Pseudocercospora ocimicola (Petr. & Cif.) Deighton; Neotypifications - Pseudocercospora kiggelariae (Syd.) Crous & U. Braun, Pseudocercospora lonicericola (W. Yamam.) Deighton, Pseudocercospora zelkovae (Hori) X.J. Liu & Y.L. Guo. PMID:24014898

  15. A 400 year reconstruction of July relative air humidity for the region Vienna (eastern Austria) based on carbon and oxygen stable isotope ratios in tree-ring latewood cellulose of oaks

    NASA Astrophysics Data System (ADS)

    Haupt, M.; Boettger, T.; Weigl, M.; Grabner, M.

    2009-04-01

    , Guillemin MT, Gutierrez E, Haupt M, Helle G, Hilasvuori E, Jungner H, Kalela-Brundin M, Krapiec M, Leuenberger M, Loader NJ, Masson-Delmotte V, Pazdur A, Pawelczyk S, Pierre M, Planells O, Pukiene R, Reynolds-Henne CE, Rinne KT, Saracino A, Saurer M, Sonninen E, Stievenard M, Switsur VR, Szczepanek M, Szychowska-Krapiec E, Todaro L, Waterhouse JS, Weigl M, Schleser GH (2007) Signal strength and climate calibration of a European tree ring isotope network. Geophys Res Lett 34: L24302. van der Schrier G, Efthymiadis D, Briffa KR, Jones PD (2007) European Alpine moisture variability for 1900-2003. Int J Climatol 27: 415-427.

  16. Is global dimming and brightening limited to urban areas?

    NASA Astrophysics Data System (ADS)

    Tanaka, Katsumasa; Imamovic, Adel; Folini, Doris; Ohmura, Atsumu; Wild, Martin

    2013-04-01

    as zenith transmittance and maximum transmittance (A. Ohmura, personal communication, 26 February 2012) separately for the pristine (i.e. least influenced by urbanization) and polluted stations. 2) We deal with several hundreds of stations in Europe, Japan, and China compiled by the GEBA project and look into the SSR data since 1960. To infer the temporal development of the urbanization level at each measurement site, we use the following two datasets: i) the high resolution gridded emission data (0.5 degree) provided by the Emissions Database for Global Atmospheric Research (EDGAR) (Source: European Commission, Joint Research Centre / Netherlands Environmental Assessment Agency), and ii) the population data (0.08 degree) obtained from the History Database of the Global Environment (HYDE) (Klein Goldewijk et al. 2010). To these data, we apply a selection of distance weighting functions to account for the spatial extent of urbanization surrounding each site (Folini et al. 2009). Our preliminary results obtained from these two approaches do not support the claim that the global dimming and brightening is limited to urban areas. References Alpert P, Kishcha P, Kaufman YJ, Schwarzbard R (2005) Global dimming or local dimming?: Effect of urbanization on sunlight availability. Geophysical Research Letters, 32, L17802. Dwyer JG, Norris JR, Ruckstuhl C (2010) Do climate models reproduce observed solar dimming and brightening over China and Japan? Journal of Geophysical Research: Atmospheres, 115, D00K08. Folini D, Kaufmann P, Ubl S, Henne S (2009) Region of influence of 13 remote European measurement sites based on modeled carbon monoxide mixing ratios. Journal of Geophysical Research: Atmospheres, 114, D08307. Klein Goldewijk K, Beusen A, Janssen P (2010) Long-term dynamic modeling of global population and built-up area in a spatially explicit way: HYDE 3.1. The Holocene, 20, 565-573. Kvalevåg MM, Myhre G (2007) Human Impact on Direct and Diffuse Solar Radiation during the

  17. List of Participants

    NASA Astrophysics Data System (ADS)

    2008-11-01

    MoralIstituto Nazionale di Fisica Nucleare, Università di Torino Valentina Giangreco Marotta PulettiUppsala University Valeria L GiliQueen Mary, University of London Luciano GirardelloUniversità di Milano-Bicocca Gian GiudiceCERN, Geneva Kevin Goldstein Institute for Theoretical Physics, Utrecht University Joaquim Gomis Universitat de Barcelona Pietro Antonio GrassiUniversità del Piemonte Orientale, Alessandria Viviane GraßLudwig-Maximilians-Universität, München Gianluca Grignani Università di Perugia Luca Griguolo Università di Parma Johannes GrosseJagiellonian University, Krakow Umut Gursoy École Polytechnique, Palaiseau Norberto Gutierrez RodriguezUniversity of Oviedo Babak HaghighatPhysikalisches Institut, Universität Bonn Troels Harmark Niels Bohr Institute, København Robert HaslhoferEidgenössische Technische Hochschule (ETH), Zürich Tae-Won HaPhysikalisches Institut, Universität Bonn Alexander HauptImperial College London and Max-Planck-Institut für Gravitationsphysik (AEI), Potsdam Marc HenneauxUniversité Libre de Bruxelles Johannes HennLAPTH, Annecy-le-Vieux Shinji HiranoNiels Bohr Institute, København Stefan HoheneggerEidgenössische Technische Hochschule (ETH), Zürich Jan HomannLudwig-Maximilians-Universität, München Gabriele Honecker CERN, Geneva Joost HoogeveenInstituut voor Theoretische Fysica, Universiteit van Amsterdam Mechthild HuebscherUniversidad Autónoma de Madrid Chris HullImperial College London Carmen-Liliana IonescuUniversity of Craiova Ella JasminUniversité Libre de Bruxelles Konstantin KanishchevInstitute of Theoretical Physics, University of Warsaw Stefanos Katmadas Utrecht University Alexandros KehagiasNational Technical University of Athens Christoph Keller Eidgenössische Technische Hochschule (ETH), Zürich Patrick Kerner Max-Planck-Institut für Physik, München Rebiai KhaledLaboratoire de Physique Mathématique et Physique Subatomique, Université Mentouri, Constantine Elias Kiritsis Centre de Physique Théorique,